# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0333/ # command:# Making conformation for sequence T0333 numbered 1 through 376 Created new target T0333 from T0333.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0333/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0333/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0333//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0333/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0333/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0333/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3oE/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3oE expands to /projects/compbio/data/pdb/1c3o.pdb.gz 1c3oE:Skipped atom 23348, because occupancy 0.5 <= existing 0.500 in 1c3oE Skipped atom 23350, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 23352, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 23354, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 23356, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 25848, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 25850, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 25852, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 25854, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 25856, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 26478, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 26480, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27205, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27207, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27209, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27211, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27213, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27256, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27258, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27260, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27262, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 27264, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 28342, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 28344, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 28346, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 28348, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 28350, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29126, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29128, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29130, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29132, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29134, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29136, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29138, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29461, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29463, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29465, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29467, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29469, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29471, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29473, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29853, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29855, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29857, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29859, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29861, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29879, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29881, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29883, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29885, because occupancy 0.500 <= existing 0.500 in 1c3oE Skipped atom 29887, because occupancy 0.500 <= existing 0.500 in 1c3oE # T0333 read from 1c3oE/merged-good-all-a2m # 1c3oE read from 1c3oE/merged-good-all-a2m # adding 1c3oE to template set # found chain 1c3oE in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oE)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oE)D558 T0333 2 :LFVSSPGI 1c3oE 10 :ILILGAGP # choosing archetypes in rotamer library T0333 10 :GHL 1c3oE 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oE 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1c3oE 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1c3oE 61 :ADATYIEP T0333 94 :RPL 1c3oE 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oE 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oE 112 :GVT T0333 135 :RNQSA 1c3oE 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1c3oE 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1c3oE 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1c3oE 536 :FATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oE 553 :ANPS T0333 210 :RPEVAITMGT 1c3oE 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1c3oE 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1c3oE 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1c3oE 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1c3oE 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1c3oE 647 :PLKLARA T0333 318 :VSRRGIGLV 1c3oE 654 :LEAAGVPVI T0333 327 :ST 1c3oE 664 :TS T0333 334 :ADLLRRLIG 1c3oE 666 :PDAIDRAED T0333 347 :RTAAREVREE 1c3oE 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1c3oE 697 :AIEMAVEKAKEI Number of specific fragments extracted= 24 number of extra gaps= 1 total=24 Number of alignments=1 # 1c3oE read from 1c3oE/merged-good-all-a2m # found chain 1c3oE in template set T0333 2 :LFVSSPGI 1c3oE 12 :ILGAGPIV T0333 10 :GHL 1c3oE 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1c3oE 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1c3oE 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oE 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oE 112 :GVT T0333 135 :RNQSA 1c3oE 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1c3oE 800 :TLSQEIQDVMRQQVQKLA T0333 173 :SFPPSLLL 1c3oE 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1c3oE 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1c3oE 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVL 1c3oE 950 :REGDKERVVDLAAKLLKQGFELDA T0333 250 :DLDI 1c3oE 985 :GINP T0333 254 :SPLGT 1c3oE 992 :NKVHE T0333 267 :G 1c3oE 997 :G T0333 269 :TP 1c3oE 998 :RP T0333 271 :LHTLLR 1c3oE 1001 :IQDRIK T0333 277 :TCTAVVHHG 1c3oE 1009 :EYTYIINTT T0333 286 :GGGTV 1c3oE 1019 :GRRAI T0333 308 :DQF 1c3oE 1025 :DSR T0333 313 :TAREAVSRRGIGLVS 1c3oE 1028 :VIRRSALQYKVHYDT Number of specific fragments extracted= 21 number of extra gaps= 0 total=45 Number of alignments=2 # 1c3oE read from 1c3oE/merged-good-all-a2m # found chain 1c3oE in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oE)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oE)D558 T0333 1 :MLFVSSPGI 1c3oE 10 :ILILGAGPI T0333 10 :GH 1c3oE 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1c3oE 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1c3oE 51 :PATI T0333 45 :LEVVDVAPDY 1c3oE 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oE 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1c3oE 112 :GV T0333 136 :N 1c3oE 114 :T T0333 138 :SAWRTRGMHRSIAS 1c3oE 115 :MIGATADAIDKAED T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1c3oE 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oE 553 :ANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1c3oE 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1c3oE 587 :LALREDGYETIMVNCN T0333 251 :LDISPLGTLPR 1c3oE 604 :ETVSTDYDTSD T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1c3oE 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1c3oE 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1c3oE 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1c3oE 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1c3oE 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1c3oE 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=65 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3oG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3oG expands to /projects/compbio/data/pdb/1c3o.pdb.gz 1c3oG:Skipped atom 35834, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 35836, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 35838, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 35840, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36529, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36531, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36533, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36535, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36537, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36539, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36541, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36923, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36925, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36927, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36929, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 36931, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 39048, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 39050, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 39052, because occupancy 0.500 <= existing 0.500 in 1c3oG Skipped atom 39054, because occupancy 0.500 <= existing 0.500 in 1c3oG # T0333 read from 1c3oG/merged-good-all-a2m # 1c3oG read from 1c3oG/merged-good-all-a2m # adding 1c3oG to template set # found chain 1c3oG in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oG)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oG)D558 T0333 2 :LFVSSPGI 1c3oG 10 :ILILGAGP T0333 10 :GHL 1c3oG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oG 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1c3oG 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1c3oG 61 :ADATYIEP T0333 94 :RPL 1c3oG 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oG 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oG 112 :GVT T0333 135 :RNQSA 1c3oG 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1c3oG 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1c3oG 521 :DLHPVYKRVDTCAAE T0333 183 :E 1c3oG 536 :F T0333 200 :LGDR 1c3oG 547 :YEEE T0333 204 :LPPV 1c3oG 553 :ANPS T0333 210 :RPEVAITMG 1c3oG 559 :REKIMVLGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1c3oG 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1c3oG 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1c3oG 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1c3oG 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1c3oG 647 :PLKLARA T0333 318 :VSRRGIG 1c3oG 654 :LEAAGVP T0333 325 :LVST 1c3oG 662 :IGTS T0333 334 :ADLLRRLIG 1c3oG 666 :PDAIDRAED T0333 347 :RTAAREVREE 1c3oG 675 :RERFQHAVER T0333 362 :TPAETVRRIVERIS 1c3oG 696 :TAIEMAVEKAKEIG Number of specific fragments extracted= 25 number of extra gaps= 1 total=90 Number of alignments=4 # 1c3oG read from 1c3oG/merged-good-all-a2m # found chain 1c3oG in template set T0333 2 :LFVSSPGI 1c3oG 12 :ILGAGPIV T0333 10 :GHL 1c3oG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1c3oG 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1c3oG 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oG 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oG 112 :GVT T0333 135 :RNQSA 1c3oG 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1c3oG 800 :TLSQEIQDVMRQQVQKLA T0333 168 :VATI 1c3oG 874 :LAEQ T0333 173 :SFPPSLLL 1c3oG 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1c3oG 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1c3oG 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLA 1c3oG 950 :REGDKERVVDLAAKLLKQGFELDAT T0333 254 :SPLG 1c3oG 982 :GEAG T0333 261 :RNVRAVGWT 1c3oG 986 :INPRLVNKV T0333 271 :LHTLLR 1c3oG 1001 :IQDRIK T0333 277 :TCTAVVHHG 1c3oG 1009 :EYTYIINTT T0333 286 :GGGT 1c3oG 1019 :GRRA T0333 308 :DQF 1c3oG 1025 :DSR T0333 313 :TAREAVSRRGIGLV 1c3oG 1028 :VIRRSALQYKVHYD Number of specific fragments extracted= 20 number of extra gaps= 0 total=110 Number of alignments=5 # 1c3oG read from 1c3oG/merged-good-all-a2m # found chain 1c3oG in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oG)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oG)D558 T0333 1 :MLFVSSPGI 1c3oG 10 :ILILGAGPI T0333 10 :GHL 1c3oG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oG 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHA 1c3oG 51 :PATI T0333 40 :AAAAG 1c3oG 55 :MTDPE T0333 45 :LEVVDVAPDY 1c3oG 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oG 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1c3oG 112 :GV T0333 136 :NQSAW 1c3oG 114 :TMIGA T0333 142 :TRGMHRSIAS 1c3oG 119 :TADAIDKAED T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1c3oG 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oG 553 :ANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIA 1c3oG 559 :REKIMVLGGGPNRIGQGIEFDYCCVH T0333 236 :AAGEVDADFVLALGD 1c3oG 588 :ALREDGYETIMVNCN T0333 251 :LDISPL 1c3oG 608 :TDYDTS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1c3oG 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1c3oG 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1c3oG 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1c3oG 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1c3oG 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1c3oG 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 21 number of extra gaps= 1 total=131 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j0aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j0aA expands to /projects/compbio/data/pdb/1j0a.pdb.gz 1j0aA:# T0333 read from 1j0aA/merged-good-all-a2m # 1j0aA read from 1j0aA/merged-good-all-a2m # adding 1j0aA to template set # found chain 1j0aA in template set T0333 2 :LFVSSPG 1j0aA 73 :VITVGAV T0333 11 :HLFPLIQLAWGFRTAGHDVLIAV 1j0aA 80 :HSNHAFVTGLAAKKLGLDAILVL T0333 34 :AEH 1j0aA 104 :GKE T0333 37 :ADRAAAAGLEVVDVA 1j0aA 112 :YLLDKIMGIETRVYD T0333 54 :YS 1j0aA 127 :AK T0333 81 :DLEEWGVQIAAV 1j0aA 132 :ELMKYAEEIAEE T0333 93 :NRPLVDGTMALVDDY 1j0aA 164 :TLGYVRAVGEIATQS T0333 108 :RPDLVVYEQGA 1j0aA 181 :KFDSIVVAAGS T0333 119 :TVGLLA 1j0aA 195 :LAGLSL T0333 125 :ADRAG 1j0aA 202 :LSILN T0333 130 :VPAVQRNQS 1j0aA 209 :IRPVGIAVG T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSL 1j0aA 218 :RFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEY T0333 209 :ARP 1j0aA 257 :GKI T0333 226 :GIGAVEPIIAAAGEVDADF 1j0aA 260 :TGEVAQIIRKVGTREGIIL T0333 253 :I 1j0aA 296 :K T0333 257 :GTLPRNV 1j0aA 297 :GELGEKI T0333 280 :AVVHHGGGGTVM 1j0aA 304 :LFIHTGGISGTF Number of specific fragments extracted= 17 number of extra gaps= 0 total=148 Number of alignments=7 # 1j0aA read from 1j0aA/merged-good-all-a2m # found chain 1j0aA in template set T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHA 1j0aA 79 :VHSNHAFVTGLAAKKLGLDAILVLRGKE T0333 38 :DRAAAAGLEVVDVA 1j0aA 113 :LLDKIMGIETRVYD T0333 52 :PDYSAVKVFEQVAKDNP 1j0aA 129 :DSFELMKYAEEIAEELK T0333 69 :RFAETVATRPAIDLEEWGVQIAA 1j0aA 147 :EGRKPYVIPPGGASPIGTLGYVR T0333 99 :GTMALVDD 1j0aA 170 :AVGEIATQ T0333 107 :YRPDLVVY 1j0aA 180 :VKFDSIVV T0333 115 :EQGA 1j0aA 190 :GSGG T0333 119 :TVGLL 1j0aA 195 :LAGLS T0333 124 :AADRAG 1j0aA 201 :GLSILN T0333 130 :VPAVQRNQSA 1j0aA 209 :IRPVGIAVGR T0333 140 :WRTRGMHRSIASFLTD 1j0aA 221 :EVMTSKLDNLIKEAAE T0333 170 :TIE 1j0aA 237 :LLG T0333 173 :SFPP 1j0aA 241 :KVEV T0333 191 :WVPYGGG 1j0aA 245 :RPELYDY T0333 200 :LGDR 1j0aA 252 :SFGE T0333 223 :QAFGIGAVEPIIAAAGEV 1j0aA 256 :YGKITGEVAQIIRKVGTR T0333 241 :DAD 1j0aA 275 :GII T0333 253 :I 1j0aA 278 :L T0333 254 :SPLG 1j0aA 297 :GELG T0333 261 :RNV 1j0aA 301 :EKI T0333 280 :AVVHHGGGGTVM 1j0aA 304 :LFIHTGGISGTF Number of specific fragments extracted= 21 number of extra gaps= 0 total=169 Number of alignments=8 # 1j0aA read from 1j0aA/merged-good-all-a2m # found chain 1j0aA in template set T0333 1 :MLFVSSPG 1j0aA 72 :VVITVGAV T0333 11 :HLFPLIQLAWGFRTAGHDVLIAV 1j0aA 80 :HSNHAFVTGLAAKKLGLDAILVL T0333 35 :EHADRAAAAGLEVVDVAPDYSAV 1j0aA 110 :GNYLLDKIMGIETRVYDAKDSFE T0333 59 :VF 1j0aA 133 :LM T0333 61 :EQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVD 1j0aA 142 :EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSE T0333 107 :YRPDLVVYEQGAT 1j0aA 180 :VKFDSIVVAAGSG T0333 120 :VGL 1j0aA 196 :AGL T0333 123 :LAADRAGV 1j0aA 200 :LGLSILNE T0333 131 :PAVQRNQSAWRT 1j0aA 210 :RPVGIAVGRFGE T0333 144 :GMHRSIASFLT 1j0aA 222 :VMTSKLDNLIK T0333 178 :L 1j0aA 238 :L T0333 182 :AEPEGWFMRWVPYGGGA 1j0aA 239 :GVKVEVRPELYDYSFGE T0333 225 :FGIGAVEPIIAAAGEVDA 1j0aA 259 :ITGEVAQIIRKVGTREGI T0333 257 :GTLPRNV 1j0aA 297 :GELGEKI T0333 280 :AVVHHGGGGTVM 1j0aA 304 :LFIHTGGISGTF Number of specific fragments extracted= 15 number of extra gaps= 0 total=184 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xv5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xv5A expands to /projects/compbio/data/pdb/1xv5.pdb.gz 1xv5A:# T0333 read from 1xv5A/merged-good-all-a2m # 1xv5A read from 1xv5A/merged-good-all-a2m # adding 1xv5A to template set # found chain 1xv5A in template set Warning: unaligning (T0333)G8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)G1015 Warning: unaligning (T0333)G10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)G1015 Warning: unaligning (T0333)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 Warning: unaligning (T0333)T269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)Y1275 T0333 1 :M 1xv5A 1001 :M T0333 2 :LFV 1xv5A 1005 :IFM T0333 5 :SSP 1xv5A 1010 :GLE T0333 11 :HLFPLIQLAWGFRTAGHDVLIAVAEHADR 1xv5A 1016 :VTKFSLEQRDWFIKNGHEVTLVYAKDKSF T0333 41 :AAAGL 1xv5A 1045 :TRTSS T0333 46 :EVVDVAP 1xv5A 1057 :IPVILAK T0333 81 :DL 1xv5A 1064 :EY T0333 98 :DGTMALVDDY 1xv5A 1066 :DKALKLVNDC T0333 110 :DLVVYEQGAT 1xv5A 1076 :DILIINSVPA T0333 120 :VGLLAADRA 1xv5A 1091 :ATINNYKKL T0333 129 :GVPAVQRNQSAW 1xv5A 1106 :SIRVVVYQHDHS T0333 144 :GMHRSIAS 1xv5A 1141 :SDNGDFNK T0333 152 :FLTDLMDKHQVSLPEPV 1xv5A 1150 :LMKEWYPETVSLFDDIE T0333 187 :WFMR 1xv5A 1167 :EAPT T0333 192 :VPYGGGAV 1xv5A 1171 :VYNFQPPM T0333 200 :LGDRL 1xv5A 1190 :DVSEI T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1xv5A 1195 :NMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERS T0333 253 :ISPLGT 1xv5A 1255 :NREIDK T0333 259 :LPRN 1xv5A 1263 :LAPN T0333 263 :VRAV 1xv5A 1269 :AQIL T0333 270 :PLHTLLRTCTAVVHHG 1xv5A 1279 :EMLERMSKSGFGYQLS T0333 288 :GTVMTAIDAGIPQLLA 1xv5A 1307 :YTHLELGACGTIPVFW T0333 304 :PDPRDQFQ 1xv5A 1330 :KFRVDNTP T0333 318 :VSRRGIG 1xv5A 1338 :LTSHDSG T0333 325 :LV 1xv5A 1346 :IW T0333 327 :STSDKV 1xv5A 1351 :NDMEST T0333 334 :ADLLRRLIGDES 1xv5A 1357 :FERIKELSSDRA T0333 346 :LRTAAREVREEMVALP 1xv5A 1370 :YDREREKAYEFLYQHQ T0333 363 :PAETVRRIVERI 1xv5A 1386 :DSSFCFKEQFDI Number of specific fragments extracted= 29 number of extra gaps= 0 total=213 Number of alignments=10 # 1xv5A read from 1xv5A/merged-good-all-a2m # found chain 1xv5A in template set Warning: unaligning (T0333)G8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)G1015 Warning: unaligning (T0333)G10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)G1015 Warning: unaligning (T0333)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 Warning: unaligning (T0333)T269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)Y1275 T0333 1 :M 1xv5A 1001 :M T0333 2 :LFV 1xv5A 1005 :IFM T0333 5 :SSP 1xv5A 1010 :GLE T0333 11 :HLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 1xv5A 1016 :VTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRT T0333 43 :AGLEVVDVAPDYS 1xv5A 1054 :SFSIPVILAKEYD T0333 99 :GTMALVDD 1xv5A 1067 :KALKLVND T0333 109 :PDLVVY 1xv5A 1075 :CDILII T0333 115 :EQGA 1xv5A 1082 :SVPA T0333 119 :TVGLLAADRA 1xv5A 1090 :EATINNYKKL T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPE 1xv5A 1106 :SIRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDN T0333 167 :PVATIE 1xv5A 1151 :MKEWYP T0333 173 :SFP 1xv5A 1158 :TVS T0333 182 :AEPEGWFMRWVPYGGGAV 1xv5A 1161 :LFDDIEEAPTVYNFQPPM T0333 209 :ARPE 1xv5A 1193 :EINM T0333 213 :VAITMGTIE 1xv5A 1198 :INRWIGRTT T0333 223 :QAFGIGAVEPIIAAAGEV 1xv5A 1207 :TWKGFYQMFDFHEKFLKP T0333 241 :DADFVLALGDLDI 1xv5A 1226 :GKSTVMEGLERSP T0333 254 :SPLGTLP 1xv5A 1256 :REIDKMN T0333 261 :RNVRAV 1xv5A 1267 :QPAQIL T0333 271 :LHTLLRTCTAVVHHG 1xv5A 1280 :MLERMSKSGFGYQLS T0333 286 :GGGTVMTAIDAGIPQLLA 1xv5A 1305 :LEYTHLELGACGTIPVFW T0333 313 :TAREAVSRRG 1xv5A 1324 :STGENLKFRV T0333 323 :IG 1xv5A 1343 :SG T0333 325 :LVSTS 1xv5A 1346 :IWFDE T0333 330 :DKVD 1xv5A 1352 :DMES T0333 334 :ADLLRRLIGDESLRTAAREVREEMVALP 1xv5A 1357 :FERIKELSSDRALYDREREKAYEFLYQH T0333 362 :TPAETVRRIVERISG 1xv5A 1386 :DSSFCFKEQFDIITK Number of specific fragments extracted= 27 number of extra gaps= 0 total=240 Number of alignments=11 # 1xv5A read from 1xv5A/merged-good-all-a2m # found chain 1xv5A in template set Warning: unaligning (T0333)G8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)G1015 Warning: unaligning (T0333)G10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)G1015 Warning: unaligning (T0333)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xv5A)Y1275 Warning: unaligning (T0333)T269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xv5A)Y1275 T0333 1 :MLFVS 1xv5A 1003 :ICIFM T0333 6 :SP 1xv5A 1011 :LE T0333 11 :HLFPLIQLAWGFRTAGHDVLIAV 1xv5A 1016 :VTKFSLEQRDWFIKNGHEVTLVY T0333 50 :VAPDYSAVKVF 1xv5A 1040 :KDKSFTRTSSH T0333 92 :VNRPLVDGTMALVDDY 1xv5A 1060 :ILAKEYDKALKLVNDC T0333 110 :DLVVYEQGAT 1xv5A 1076 :DILIINSVPA T0333 120 :VGLLAADRA 1xv5A 1091 :ATINNYKKL T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLT 1xv5A 1106 :SIRVVVYQHDHSVLSLRRNLGLEETV T0333 156 :LMDKHQVSLPEPVATIESFPPSLL 1xv5A 1156 :PETVSLFDDIEEAPTVYNFQPPMD T0333 197 :GA 1xv5A 1180 :IV T0333 199 :VLGDRL 1xv5A 1189 :KDVSEI T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGD 1xv5A 1195 :NMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLE T0333 251 :LDISPL 1xv5A 1256 :REIDKM T0333 259 :LPRN 1xv5A 1263 :LAPN T0333 263 :VRAV 1xv5A 1269 :AQIL T0333 270 :PLHTLL 1xv5A 1276 :INSEML T0333 276 :RTCTAVVHHGGG 1xv5A 1285 :SKSGFGYQLSKL T0333 288 :GTVMTAIDAGIPQLLA 1xv5A 1307 :YTHLELGACGTIPVFW T0333 310 :FQHTARE 1xv5A 1323 :KSTGENL T0333 323 :IGLVSTSDKVDADLLRRLIGD 1xv5A 1346 :IWFDENDMESTFERIKELSSD T0333 344 :ESLRTAAREVREEMVALPTPAETVRRIVERISG 1xv5A 1368 :ALYDREREKAYEFLYQHQDSSFCFKEQFDIITK Number of specific fragments extracted= 21 number of extra gaps= 0 total=261 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v4vA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1v4vA/merged-good-all-a2m # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set T0333 1 :M 1v4vA 5 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 1v4vA 8 :VVLAFGTRPEATKMAPVYLALRGI T0333 26 :GHDVLIAV 1v4vA 33 :GLKPLVLL T0333 34 :AEHADRAAAA 1v4vA 42 :GQHREQLRQA T0333 44 :GLEVVDVA 1v4vA 56 :GIQEDRNL T0333 61 :EQ 1v4vA 64 :DV T0333 76 :TRPAIDLEEWGV 1v4vA 66 :MQERQALPDLAA T0333 95 :PLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1v4vA 78 :RILPQAARALKEMGADYVLVHGDTLTTFAVAWAA T0333 129 :GVPAVQRNQSAW 1v4vA 115 :GIPVGHVEAGLR T0333 141 :RTRGMHRSIASFLTDLMDKH 1v4vA 128 :GNLKEPFPEEANRRLTDVLT T0333 168 :VATIESF 1v4vA 148 :DLDFAPT T0333 176 :PSLLLEAEPEGWFMRWVPYGGGAV 1v4vA 155 :PLAKANLLKEGKREEGILVTGQTG T0333 200 :LGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVD 1v4vA 188 :LGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFP T0333 242 :ADFVLALGDLD 1v4vA 231 :LTFVYPVHLNP T0333 253 :ISPL 1v4vA 251 :LKGV T0333 261 :RNVRAVGWTP 1v4vA 255 :RNFVLLDPLE T0333 271 :LHTLLRTCTAVVHHGG 1v4vA 268 :MAALMRASLLLVTDSG T0333 288 :GTVMTAIDAGIPQLLAPDPRDQFQ 1v4vA 284 :GLQEEGAALGVPVVVLRNVTERPE T0333 318 :VSRRGIG 1v4vA 308 :GLKAGIL T0333 325 :LV 1v4vA 316 :LA T0333 327 :STSDKV 1v4vA 319 :TDPEGV T0333 334 :ADLLRRLIGDESLRTAARE 1v4vA 325 :YRVVKGLLENPEELSRMRK Number of specific fragments extracted= 22 number of extra gaps= 0 total=283 Number of alignments=13 # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set T0333 1 :M 1v4vA 5 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 1v4vA 8 :VVLAFGTRPEATKMAPVYLALRGI T0333 26 :GHDVLIAV 1v4vA 33 :GLKPLVLL T0333 52 :PDYSAVKVFEQ 1v4vA 41 :TGQHREQLRQA T0333 63 :VAKDNPRFAETVATRPAIDLEEWGVQIAA 1v4vA 53 :SLFGIQEDRNLDVMQERQALPDLAARILP T0333 99 :GTMALVDDYRPDLVVYEQGA 1v4vA 82 :QAARALKEMGADYVLVHGDT T0333 119 :TVGLLAADRAGVPAVQRNQSA 1v4vA 105 :FAVAWAAFLEGIPVGHVEAGL T0333 140 :WRTRGMHRSIASF 1v4vA 129 :NLKEPFPEEANRR T0333 153 :LTDLMDKHQVSLPEPVATIE 1v4vA 143 :TDVLTDLDFAPTPLAKANLL T0333 173 :SFPPS 1v4vA 165 :GKREE T0333 191 :WVPYGG 1v4vA 170 :GILVTG T0333 204 :LPPVP 1v4vA 189 :GRLPE T0333 209 :ARPEVAITMGTIE 1v4vA 197 :EGPYVTVTMHRRE T0333 223 :QAFGIGAVEPIIAAAGEV 1v4vA 210 :NWPLLSDLAQALKRVAEA T0333 241 :DADFVLALGDLDI 1v4vA 230 :HLTFVYPVHLNPV T0333 254 :SPLGTL 1v4vA 249 :PVLKGV T0333 261 :RNVRAVGWTP 1v4vA 255 :RNFVLLDPLE T0333 271 :LHTLLRTCTAVVHHGGG 1v4vA 268 :MAALMRASLLLVTDSGG T0333 289 :TVMTAIDAGIPQLLAPDPRDQF 1v4vA 285 :LQEEGAALGVPVVVLRNVTERP T0333 313 :TAREA 1v4vA 307 :EGLKA T0333 322 :GIGLVSTSDKVD 1v4vA 312 :GILKLAGTDPEG T0333 334 :ADLLRRLIGDESLRTAARE 1v4vA 325 :YRVVKGLLENPEELSRMRK Number of specific fragments extracted= 22 number of extra gaps= 0 total=305 Number of alignments=14 # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 1v4vA 8 :VVLAFGTRPEATKMAPVYLALRGI T0333 26 :GHDVLIAV 1v4vA 33 :GLKPLVLL T0333 34 :AEHADRAAA 1v4vA 42 :GQHREQLRQ T0333 43 :AGLEVVDVAPDYS 1v4vA 55 :FGIQEDRNLDVMQ T0333 66 :DNPRFA 1v4vA 68 :ERQALP T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1v4vA 74 :DLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAA T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLT 1v4vA 115 :GIPVGHVEAGLRSGNLKEPFPEEANR T0333 183 :EPEGWFMRWVPYGGGA 1v4vA 165 :GKREEGILVTGQTGVD T0333 199 :VLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEV 1v4vA 187 :KLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAF T0333 241 :DADFVLALGD 1v4vA 230 :HLTFVYPVHL T0333 257 :GTLPRNVRAVGWTP 1v4vA 251 :LKGVRNFVLLDPLE T0333 271 :LHTLLRTCTAVVHHGG 1v4vA 268 :MAALMRASLLLVTDSG T0333 288 :GTVMTAIDAGIPQLLAPDPRDQFQHT 1v4vA 284 :GLQEEGAALGVPVVVLRNVTERPEGL T0333 318 :VSRRGIGLV 1v4vA 310 :KAGILKLAG T0333 328 :TSDKVDADLLRRLIGDESLRTAARE 1v4vA 319 :TDPEGVYRVVKGLLENPEELSRMRK Number of specific fragments extracted= 15 number of extra gaps= 0 total=320 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o5iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1o5iA expands to /projects/compbio/data/pdb/1o5i.pdb.gz 1o5iA:# T0333 read from 1o5iA/merged-good-all-a2m # 1o5iA read from 1o5iA/merged-good-all-a2m # adding 1o5iA to template set # found chain 1o5iA in template set Warning: unaligning (T0333)Y54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5iA)D59 Warning: unaligning (T0333)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5iA)D59 T0333 2 :LFVSSPGIG 1o5iA 10 :VLVLAASRG T0333 14 :PLIQLAWGFRTAGHDVLIAV 1o5iA 19 :IGRAVADVLSQEGAEVTICA T0333 35 :EHADRAAAAGLEVVDVAPD 1o5iA 39 :RNEELLKRSGHRYVVCDLR T0333 56 :AVKVFEQVAKDNPRFAETV 1o5iA 73 :LVLNAGGPKAGFFDELTNE T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDY 1o5iA 92 :DFKEAIDSLFLNMIKIVRNYLPAMKEK T0333 108 :RPDLVVYEQGAT 1o5iA 120 :WGRIVAITSFSV T0333 120 :VGLLAADRA 1o5iA 144 :ARMALTGFL T0333 129 :GVPAVQRNQSAW 1o5iA 163 :GITVNCVAPGWT T0333 141 :RTRGMHRSIASFLTDLMDKHQVS 1o5iA 198 :RRMAKPEEIASVVAFLCSEKASY T0333 166 :EPVATIESF 1o5iA 221 :LTGQTIVVD Number of specific fragments extracted= 10 number of extra gaps= 1 total=330 Number of alignments=16 # 1o5iA read from 1o5iA/merged-good-all-a2m # found chain 1o5iA in template set Warning: unaligning (T0333)Y54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5iA)D59 Warning: unaligning (T0333)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5iA)D59 T0333 14 :PLIQLAWGFRTAGHDVLIAV 1o5iA 19 :IGRAVADVLSQEGAEVTICA T0333 35 :EHADRAAAAGLEVVDVAPD 1o5iA 39 :RNEELLKRSGHRYVVCDLR T0333 56 :AVKVFEQV 1o5iA 60 :LDLLFEKV T0333 65 :KDNPRFAETVATRPAIDLEEWGVQ 1o5iA 68 :KEVDILVLNAGGPKAGFFDELTNE T0333 89 :IAAVNRPLVDGTMALVDD 1o5iA 93 :FKEAIDSLFLNMIKIVRN T0333 121 :GLLAADRAGVPAVQRNQSA 1o5iA 111 :YLPAMKEKGWGRIVAITSF T0333 140 :WRTRGMHRSIASFLTDLM 1o5iA 139 :YTSNSARMALTGFLKTLS T0333 158 :DKHQVSLPEPVATIE 1o5iA 166 :VNCVAPGWTETERVK T0333 173 :SFPPS 1o5iA 182 :LLSEE T0333 209 :ARP 1o5iA 196 :PMR T0333 223 :QAFGIGAVEPIIAAAGE 1o5iA 199 :RMAKPEEIASVVAFLCS T0333 254 :SPLGTLPRNVRAVG 1o5iA 216 :EKASYLTGQTIVVD Number of specific fragments extracted= 12 number of extra gaps= 1 total=342 Number of alignments=17 # 1o5iA read from 1o5iA/merged-good-all-a2m # found chain 1o5iA in template set Warning: unaligning (T0333)Y54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5iA)D59 Warning: unaligning (T0333)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5iA)D59 Warning: unaligning (T0333)A182 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5iA)E136 Warning: unaligning (T0333)E183 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5iA)E136 T0333 2 :LFVSSPGI 1o5iA 10 :VLVLAASR T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1o5iA 18 :GIGRAVADVLSQEGAEVTICA T0333 36 :HADRAAAAGLEVVDVAPD 1o5iA 40 :NEELLKRSGHRYVVCDLR T0333 56 :AVKVFEQVAK 1o5iA 60 :LDLLFEKVKE T0333 66 :DNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYE 1o5iA 77 :AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAI T0333 174 :FPPSLLLE 1o5iA 127 :TSFSVISP T0333 184 :P 1o5iA 137 :N T0333 223 :QAFGIGAVEPIIAAAGEV 1o5iA 138 :LYTSNSARMALTGFLKTL T0333 241 :DADF 1o5iA 163 :GITV T0333 245 :VLALGDLDISPL 1o5iA 168 :CVAPGWTETERV T0333 317 :A 1o5iA 180 :K T0333 327 :STSDKVDADL 1o5iA 182 :LLSEEKKKQV T0333 358 :VALPTPAETVRRIVERI 1o5iA 198 :RRMAKPEEIASVVAFLC Number of specific fragments extracted= 13 number of extra gaps= 2 total=355 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2acvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2acvA expands to /projects/compbio/data/pdb/2acv.pdb.gz 2acvA:# T0333 read from 2acvA/merged-good-all-a2m # 2acvA read from 2acvA/merged-good-all-a2m # adding 2acvA to template set # found chain 2acvA in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 2acvA 13 :IFIPAPGIGHLASALEFAKLLTNH T0333 26 :GHDVLIAVAEH 2acvA 39 :NLYITVFCIKF T0333 37 :ADRAAAA 2acvA 56 :DSYIKSV T0333 44 :GLEVVDVAP 2acvA 68 :QIQLIDLPE T0333 65 :KDNPRFAETV 2acvA 78 :EPPPQELLKS T0333 85 :WGVQIAAVNRPLVDGTMALVDDY 2acvA 88 :PEFYILTFLESLIPHVKATIKTI T0333 108 :RPDLVVYEQGATVGLLAADRAGVPAVQRNQSAW 2acvA 114 :KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNV T0333 141 :RTRGMHRSIASFLTDL 2acvA 194 :NKDGGYIAYYKLAERF T0333 165 :PEPVATIESFPPSLL 2acvA 210 :RDTKGIIVNTFSDLE T0333 180 :LEAEPEGWFM 2acvA 231 :LYDHDEKIPP T0333 192 :VPYGGGAV 2acvA 241 :IYAVGPLL T0333 200 :LGDRLPPVPARPEVAITMGTIELQ 2acvA 266 :ILKWLDEQPDKSVVFLCFGSMGVS T0333 225 :FGIGAVEPIIAAAGEVDADFVLALGDLD 2acvA 290 :FGPSQIREIALGLKHSGVRFLWSNSAEK T0333 253 :ISPLGT 2acvA 321 :PEGFLE T0333 261 :RNVRAVGWTPLHTLLRT 2acvA 332 :GKGMICGWAPQVEVLAH T0333 278 :CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 2acvA 351 :IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFR T0333 318 :VSR 2acvA 389 :LVK T0333 321 :RGIG 2acvA 393 :WGVG T0333 325 :LV 2acvA 398 :GL T0333 327 :STSDKV 2acvA 410 :VAAEEI T0333 334 :ADLLRRLIG 2acvA 416 :EKGLKDLMD T0333 344 :ES 2acvA 425 :KD T0333 346 :LRTAAREVREE 2acvA 429 :VHKKVQEMKEM T0333 357 :MVALPT 2acvA 443 :AVVDGG T0333 363 :PAETVRRIVERI 2acvA 450 :SLISVGKLIDDI Number of specific fragments extracted= 25 number of extra gaps= 0 total=380 Number of alignments=19 # 2acvA read from 2acvA/merged-good-all-a2m # found chain 2acvA in template set T0333 1 :M 2acvA 3 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 2acvA 13 :IFIPAPGIGHLASALEFAKLLTNH T0333 26 :GHDVLIAVAEHA 2acvA 39 :NLYITVFCIKFP T0333 52 :PDYSAVKVFEQVAKDNP 2acvA 51 :GMPFADSYIKSVLASQP T0333 69 :RFAETVATRPAIDLEEWGVQ 2acvA 69 :IQLIDLPEVEPPPQELLKSP T0333 89 :IAAVNRPLVDGTMALVDD 2acvA 92 :ILTFLESLIPHVKATIKT T0333 107 :YRPDLVVYEQGATVGLLAADRAGVPAVQRNQSA 2acvA 113 :NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSN T0333 140 :WRTRGMHRSIASF 2acvA 193 :FNKDGGYIAYYKL T0333 153 :LTDLMDKHQVSLPE 2acvA 208 :RFRDTKGIIVNTFS T0333 167 :PVATIESFPPSLL 2acvA 227 :SIDALYDHDEKIP T0333 191 :WVPYGGGAVLGDRLPPVP 2acvA 240 :PIYAVGPLLDLKGQPNPK T0333 209 :ARPEVAITMGTIE 2acvA 275 :DKSVVFLCFGSMG T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLALGDLD 2acvA 288 :VSFGPSQIREIALGLKHSGVRFLWSNSAEK T0333 254 :SPLGTLP 2acvA 318 :KVFPEGF T0333 261 :RNVRAVGWTPLHTLLR 2acvA 332 :GKGMICGWAPQVEVLA T0333 277 :TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQF 2acvA 350 :AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ T0333 313 :TAREAVSR 2acvA 384 :LNAFRLVK T0333 321 :RGIGLVSTS 2acvA 393 :WGVGLGLRV T0333 330 :DKVD 2acvA 411 :AAEE T0333 334 :ADLLRRLIGDE 2acvA 416 :EKGLKDLMDKD T0333 345 :SLRTAAREVREEMVALP 2acvA 431 :KKVQEMKEMSRNAVVDG T0333 362 :TPAETVRRIVERIS 2acvA 449 :SSLISVGKLIDDIT Number of specific fragments extracted= 22 number of extra gaps= 0 total=402 Number of alignments=20 # 2acvA read from 2acvA/merged-good-all-a2m # found chain 2acvA in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTA 2acvA 12 :LIFIPAPGIGHLASALEFAKLLTNH T0333 26 :GHDVLIAV 2acvA 39 :NLYITVFC T0333 34 :A 2acvA 50 :P T0333 35 :EHADRAAA 2acvA 57 :SYIKSVLA T0333 43 :AGLEVVDVAPDYSAVKVFEQV 2acvA 67 :PQIQLIDLPEVEPPPQELLKS T0333 85 :WGVQIAAVNRPLVDGTMALVDDY 2acvA 88 :PEFYILTFLESLIPHVKATIKTI T0333 108 :RPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 2acvA 114 :KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQI T0333 182 :AEPEGWFMRWVPYGGGA 2acvA 235 :DEKIPPIYAVGPLLDLK T0333 199 :VLGDRLPPVPARPEVAITMGTIE 2acvA 265 :LILKWLDEQPDKSVVFLCFGSMG T0333 222 :L 2acvA 289 :S T0333 225 :FGIGAVEPIIAAAGEVDADFVLALGDLD 2acvA 290 :FGPSQIREIALGLKHSGVRFLWSNSAEK T0333 255 :P 2acvA 318 :K T0333 258 :TLPRN 2acvA 319 :VFPEG T0333 264 :RAVGWTPLHTLL 2acvA 335 :MICGWAPQVEVL T0333 276 :RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAV 2acvA 349 :KAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK T0333 319 :SRRGIGLV 2acvA 393 :WGVGLGLR T0333 327 :STSDKVDADLLRRLIGDE 2acvA 409 :VVAAEEIEKGLKDLMDKD T0333 345 :SLRTAAREVREEMVAL 2acvA 428 :IVHKKVQEMKEMSRNA T0333 361 :PTPAETVRRIVERI 2acvA 448 :GSSLISVGKLIDDI Number of specific fragments extracted= 19 number of extra gaps= 0 total=421 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vljA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1vljA/merged-good-all-a2m # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0333 18 :LAWGFRTAGH 1vljA 22 :IGEEIKNAGI T0333 28 :DVLIAVAEH 1vljA 33 :KVLFLYGGG T0333 37 :ADRAAAAGLEVVDVAP 1vljA 53 :VDSLKKHGIEWVEVSG T0333 55 :SA 1vljA 70 :KP T0333 67 :N 1vljA 72 :N T0333 81 :DLE 1vljA 73 :PVL T0333 95 :PLVDGTMALVDDYRPDLVV 1vljA 76 :SKVHEAVEVAKKEKVEAVL T0333 114 :YEQGA 1vljA 96 :VGGGS T0333 119 :TVGLLAADRA 1vljA 103 :DSAKAVAAGA T0333 130 :VPAVQRNQSAW 1vljA 132 :LPIFDVLTISA T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVA 1vljA 205 :FDGSSPEISNEIAEGTIRTIMKMTERLIE T0333 175 :PPSLL 1vljA 234 :KPDDY T0333 180 :LEAEPEGWFMRWVPYGGGAV 1vljA 248 :ATIALNGTMAVGRRGGEWAC T0333 200 :LGDRLPP 1vljA 312 :IFGFEGE T0333 226 :GIGAVEPIIAA 1vljA 319 :GEELILKGIEA T0333 312 :HTAR 1vljA 330 :FKNW T0333 318 :VSRRGIG 1vljA 334 :LKKVGAP T0333 325 :LV 1vljA 342 :SL T0333 327 :STSDKV 1vljA 348 :IPEEDI T0333 344 :ESLRTAAREVREE 1vljA 354 :DKIVDNVMLLVEK T0333 362 :T 1vljA 380 :V T0333 363 :PAETVRRIVERI 1vljA 382 :EREDVREILKLA Number of specific fragments extracted= 22 number of extra gaps= 0 total=443 Number of alignments=22 # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0333 18 :LAWGFRTAGH 1vljA 22 :IGEEIKNAGI T0333 28 :DVLIAVAEHA 1vljA 33 :KVLFLYGGGS T0333 38 :DRAAAAGLEVVDVA 1vljA 54 :DSLKKHGIEWVEVS T0333 75 :ATRPAIDLEEWG 1vljA 68 :GVKPNPVLSKVH T0333 99 :GTMALVDDYRPDLVVY 1vljA 80 :EAVEVAKKEKVEAVLG T0333 115 :EQGA 1vljA 97 :GGGS T0333 119 :TVGLLAADRAG 1vljA 103 :DSAKAVAAGAL T0333 130 :VPAVQRNQSA 1vljA 132 :LPIFDVLTIS T0333 140 :WRTRGMHRSIASFLTDL 1vljA 317 :GEGEELILKGIEAFKNW T0333 168 :VATIE 1vljA 334 :LKKVG T0333 173 :SFPPS 1vljA 340 :PVSLK T0333 203 :RLPPVP 1vljA 345 :DAGIPE T0333 209 :ARP 1vljA 372 :GAS T0333 217 :MGTIELQAF 1vljA 375 :LGRIMVLER T0333 228 :GAVEPIIAAAG 1vljA 384 :EDVREILKLAA Number of specific fragments extracted= 15 number of extra gaps= 0 total=458 Number of alignments=23 # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0333 18 :LAWGFRTAGHD 1vljA 22 :IGEEIKNAGIR T0333 29 :VLIAV 1vljA 34 :VLFLY T0333 34 :A 1vljA 40 :G T0333 35 :EHADRAAAAGLEVVDVAPDYSAV 1vljA 51 :QVVDSLKKHGIEWVEVSGVKPNP T0333 93 :NRPLVDGTMALVDDYRPDLVVY 1vljA 74 :VLSKVHEAVEVAKKEKVEAVLG T0333 115 :EQGAT 1vljA 97 :GGGSV T0333 120 :VGLLAADRAGV 1vljA 104 :SAKAVAAGALY T0333 131 :PAVQRNQSAWRTRGMHR 1vljA 133 :PIFDVLTISATGTEMNG T0333 155 :DLMDKHQVS 1vljA 314 :GFEGEGEEL T0333 226 :GIGAVEPIIAAAGEVDADF 1vljA 323 :ILKGIEAFKNWLKKVGAPV T0333 252 :DI 1vljA 342 :SL T0333 255 :PLGTLPRN 1vljA 344 :KDAGIPEE T0333 307 :RDQFQHTAREAV 1vljA 354 :DKIVDNVMLLVE T0333 319 :SRRG 1vljA 371 :KGAS T0333 325 :LV 1vljA 375 :LG T0333 327 :STSDKVDADLLRRL 1vljA 380 :VLEREDVREILKLA Number of specific fragments extracted= 16 number of extra gaps= 0 total=474 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pswA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pswA expands to /projects/compbio/data/pdb/1psw.pdb.gz 1pswA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0333 read from 1pswA/merged-good-all-a2m # 1pswA read from 1pswA/merged-good-all-a2m # adding 1pswA to template set # found chain 1pswA in template set Warning: unaligning (T0333)V50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pswA)E65 Warning: unaligning (T0333)D81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pswA)E65 T0333 1 :M 1pswA 1 :M T0333 2 :LFVSSPGI 1pswA 3 :ILVIGPSW T0333 10 :GHLFPLIQLAWGFRTA 1pswA 12 :GDMMMSQSLYRTLQAR T0333 26 :GHDVLIAVAEHADRAAAA 1pswA 30 :QAIIDVMAPAWCRPLLSR T0333 45 :L 1pswA 48 :M T0333 46 :EVVD 1pswA 53 :EAIP T0333 82 :LEEWGVQI 1pswA 66 :IGERRKLG T0333 102 :ALVDDYRPDLVVYEQGAT 1pswA 74 :HSLREKRYDRAYVLPNSF T0333 121 :GLLAADRAGVPAVQRNQSAW 1pswA 93 :SALVPLFAGIPHRTGWRGEM T0333 141 :RTRGMHRSIASFL 1pswA 124 :DKEAWPLMVERYI T0333 156 :LMDKHQVSLPEP 1pswA 137 :ALAYDKGIMRTA T0333 181 :EAEPEGWFMRWVPYGGGAV 1pswA 149 :QDLPQPLLWPQLQVSEGEK T0333 200 :LGDRLPPVPARPEVAITMGT 1pswA 170 :TCNQFSLSSERPMIGFCPGA T0333 220 :IELQA 1pswA 191 :FGPAK T0333 225 :FGIGAVEPIIAAAGEVDADFVLALG 1pswA 197 :WPHYHYAELAKQLIDEGYQVVLFGS T0333 254 :SPLGT 1pswA 222 :AKDHE T0333 261 :RNVRAV 1pswA 241 :AWCRNL T0333 267 :GWTPLHTL 1pswA 248 :GETQLDQA T0333 275 :LRTCTAVVHHGG 1pswA 259 :IAACKAIVTNDS T0333 288 :GTVMTAIDAGIPQLLAPDP 1pswA 271 :GLMHVAAALNRPLVALYGP T0333 324 :G 1pswA 302 :A T0333 325 :LV 1pswA 304 :VI T0333 327 :STSDKV 1pswA 330 :ITPQRV T0333 347 :RTAAREVREE 1pswA 336 :LEELNALLLQ Number of specific fragments extracted= 24 number of extra gaps= 0 total=498 Number of alignments=25 # 1pswA read from 1pswA/merged-good-all-a2m # found chain 1pswA in template set Warning: unaligning (T0333)V50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pswA)E65 Warning: unaligning (T0333)K58 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pswA)E65 Warning: unaligning (T0333)V332 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pswA)E321 T0333 1 :M 1pswA 1 :M T0333 2 :LFVSSPGI 1pswA 3 :ILVIGPSW T0333 10 :GHLFPLIQLAWGFRTA 1pswA 12 :GDMMMSQSLYRTLQAR T0333 26 :GHDVLIAVAEHADRAAA 1pswA 30 :QAIIDVMAPAWCRPLLS T0333 43 :AGL 1pswA 49 :PEV T0333 46 :EVVD 1pswA 53 :EAIP T0333 59 :V 1pswA 66 :I T0333 83 :EEW 1pswA 67 :GER T0333 98 :DGTMALVDDYRPDLVVY 1pswA 70 :RKLGHSLREKRYDRAYV T0333 116 :QGA 1pswA 92 :KSA T0333 123 :LAADRAGVPAVQRNQSA 1pswA 95 :LVPLFAGIPHRTGWRGE T0333 140 :WRTRGMHRSIASFLTDL 1pswA 123 :LDKEAWPLMVERYIALA T0333 166 :EPVATIE 1pswA 140 :YDKGIMR T0333 173 :SFPPS 1pswA 150 :DLPQP T0333 191 :WVP 1pswA 155 :LLW T0333 202 :D 1pswA 158 :P T0333 205 :PPV 1pswA 159 :QLQ T0333 209 :ARPEVAITMGTIELQAFG 1pswA 179 :ERPMIGFCPGAEFGPAKR T0333 227 :IGAVEPIIAAAGEVDADFVLALGDLDI 1pswA 199 :HYHYAELAKQLIDEGYQVVLFGSAKDH T0333 254 :SPLGTLP 1pswA 230 :EILAALN T0333 261 :RNVRAV 1pswA 241 :AWCRNL T0333 267 :GWTP 1pswA 248 :GETQ T0333 271 :LHTLLRTCTAVVHHGGG 1pswA 255 :AVILIAACKAIVTNDSG T0333 289 :TVMTAIDAGIPQLLAPDP 1pswA 272 :LMHVAAALNRPLVALYGP T0333 321 :RGIGLVSTS 1pswA 300 :HKARVIRLI T0333 333 :D 1pswA 322 :G T0333 334 :ADLLRRL 1pswA 324 :HQSLIDI T0333 362 :TPAETVRRIVERI 1pswA 331 :TPQRVLEELNALL Number of specific fragments extracted= 28 number of extra gaps= 0 total=526 Number of alignments=26 # 1pswA read from 1pswA/merged-good-all-a2m # found chain 1pswA in template set Warning: unaligning (T0333)V50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pswA)E65 Warning: unaligning (T0333)P78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pswA)E65 T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTA 1pswA 3 :ILVIGPSWVGDMMMSQSLYRTLQAR T0333 26 :GHDVLIAV 1pswA 30 :QAIIDVMA T0333 34 :AEHADRAAAAG 1pswA 39 :AWCRPLLSRMP T0333 46 :EVVD 1pswA 53 :EAIP T0333 79 :A 1pswA 66 :I T0333 95 :PLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVS 1pswA 67 :GERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERY T0333 169 :A 1pswA 136 :I T0333 171 :IESFPPSLLLEAEPEGWFMRWVPYGGGA 1pswA 137 :ALAYDKGIMRTAQDLPQPLLWPQLQVSE T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1pswA 169 :YTCNQFSLSSERPMIGFCPGAEF T0333 222 :LQAFGIGAVEPIIAAAGEVDADFVLALG 1pswA 194 :AKRWPHYHYAELAKQLIDEGYQVVLFGS T0333 254 :SPL 1pswA 222 :AKD T0333 261 :RNVRAV 1pswA 241 :AWCRNL T0333 267 :GWTPLHTLL 1pswA 248 :GETQLDQAV T0333 276 :RTCTAVVHHG 1pswA 260 :AACKAIVTND T0333 287 :GGTVMTAIDAGIPQLLAPDPRD 1pswA 270 :SGLMHVAAALNRPLVALYGPSS T0333 320 :RRGIGL 1pswA 300 :HKARVI T0333 327 :STSDKVDADLLRRLIG 1pswA 329 :DITPQRVLEELNALLL Number of specific fragments extracted= 17 number of extra gaps= 0 total=543 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q7zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1q7zA/merged-good-all-a2m # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0333 2 :LFVSSPGIGHLF 1q7zA 15 :VLLLDGAYGTEF T0333 14 :PLIQLAWGFRTAGHDVLIAV 1q7zA 45 :VVLKVHRSYIESGSDVILTN T0333 34 :AEHADR 1q7zA 66 :FGATRM T0333 40 :AAAAGL 1q7zA 73 :LRKHGL T0333 56 :AVKVFEQVAKDNPRFAETVA 1q7zA 101 :LVFGDIGPTGELPYPLGSTL T0333 86 :GVQIAAVNRPLV 1q7zA 121 :FEEFYENFRETV T0333 102 :ALVDDYRPDLVVYEQGATVGLLAADRA 1q7zA 133 :EIMVEEGVDGIIFETFSDILELKAAVL T0333 129 :GVPAVQRNQSAW 1q7zA 167 :DVFLIAHMTFDE T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVATIESF 1q7zA 271 :GCCGTTPEHVKLFRKVLGNRKPLQRKKKRIFAVS T0333 187 :WFMRWVPY 1q7zA 305 :SPSKLVTF T0333 209 :ARPEVAI 1q7zA 313 :DHFVVIG T0333 218 :GT 1q7zA 326 :GR T0333 220 :I 1q7zA 330 :L T0333 221 :ELQAFG 1q7zA 333 :EMQKGN T0333 227 :IGAVEPIIAAAGE 1q7zA 340 :EIVIKEAKTQVEK T0333 241 :DADFV 1q7zA 353 :GAEVL T0333 246 :LALGD 1q7zA 359 :VNFGI T0333 253 :ISPL 1q7zA 364 :ESQI T0333 270 :PLHTLLR 1q7zA 368 :DVRYVEK T0333 288 :GTVMTAIDAGIPQLLAPDPRD 1q7zA 375 :IVQTLPYVSNVPLSLDIQNVD T0333 312 :HTAR 1q7zA 396 :LTER T0333 318 :VSRRGIGLV 1q7zA 400 :ALRAYPGRS T0333 327 :STSDKV 1q7zA 415 :VDEEEL T0333 334 :ADLLRRLI 1q7zA 421 :EMKINLLK T0333 342 :GDES 1q7zA 446 :SFEE T0333 346 :LRTAAREVREE 1q7zA 453 :YFEKALKILER T0333 357 :MVALP 1q7zA 479 :LGAEG T0333 363 :PAETVRRIVERI 1q7zA 484 :KPVEVLKTIEFI Number of specific fragments extracted= 28 number of extra gaps= 0 total=571 Number of alignments=28 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0333 13 :FPLIQLAWGFRTAGHDVLIAVAE 1q7zA 44 :DVVLKVHRSYIESGSDVILTNTF T0333 36 :HADRAAAAGLE 1q7zA 69 :TRMKLRKHGLE T0333 52 :PDY 1q7zA 80 :DKL T0333 55 :SAVKVFEQVAKDNPRFAE 1q7zA 88 :NAVRIARRAAGEKLVFGD T0333 73 :TVATRPAIDLEEWGVQIA 1q7zA 112 :LPYPLGSTLFEEFYENFR T0333 99 :GTMALVDDYRPDLVVY 1q7zA 130 :ETVEIMVEEGVDGIIF T0333 117 :GA 1q7zA 148 :FS T0333 119 :TVGLLAADRAG 1q7zA 156 :AAVLAAREVSR T0333 130 :VPAVQRNQSA 1q7zA 168 :VFLIAHMTFD T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLPEPVATIE 1q7zA 208 :SLGPEEILPIFQELSQYTDKFLVVEPNAGKPIV T0333 173 :SFPPSLLLEA 1q7zA 248 :PLKPHDFAVH T0333 191 :WVPYGGGAV 1q7zA 265 :GVNIFGGCC T0333 205 :PPVP 1q7zA 291 :KPLQ T0333 209 :ARPEVAI 1q7zA 313 :DHFVVIG T0333 217 :MGTIE 1q7zA 322 :INPAG T0333 222 :LQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1q7zA 334 :MQKGNEEIVIKEAKTQVEKGAEVLDVNFGIE T0333 254 :SP 1q7zA 365 :SQ T0333 269 :TPLHTLLR 1q7zA 367 :IDVRYVEK T0333 289 :TVMTAIDAGIPQLLAPDP 1q7zA 376 :VQTLPYVSNVPLSLDIQN T0333 307 :RDQF 1q7zA 417 :EEEL T0333 312 :HTAREAVSRRGIGLVSTS 1q7zA 421 :EMKINLLKKYGGTLIVLL T0333 330 :DKVD 1q7zA 442 :DVPK T0333 334 :ADLLRRL 1q7zA 447 :FEERKEY T0333 347 :RTAAREVREEMV 1q7zA 454 :FEKALKILERHD T0333 359 :ALPTPA 1q7zA 481 :AEGKPV T0333 365 :ETVRRIVE 1q7zA 490 :KTIEFISS Number of specific fragments extracted= 26 number of extra gaps= 0 total=597 Number of alignments=29 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0333 14 :PLIQLAWGFRTAGHDVLIAV 1q7zA 45 :VVLKVHRSYIESGSDVILTN T0333 34 :AEHADRAAAAGL 1q7zA 67 :GATRMKLRKHGL T0333 54 :YSAVKVF 1q7zA 79 :EDKLDPI T0333 61 :EQVAKDNPRF 1q7zA 111 :ELPYPLGSTL T0333 86 :G 1q7zA 121 :F T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1q7zA 122 :EEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVL T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLT 1q7zA 167 :DVFLIAHMTFDEKGRSLTGTDPANFA T0333 160 :HQVSLPEPVATIESFP 1q7zA 293 :LQRKKKRIFAVSSPSK T0333 178 :LL 1q7zA 309 :LV T0333 181 :E 1q7zA 311 :T T0333 185 :EGWFMRWVPYGGGA 1q7zA 312 :FDHFVVIGERINPA T0333 199 :VLGDRLP 1q7zA 329 :KLWAEMQ T0333 224 :AFGIGAVEPIIAAAGEVDADFVLALGD 1q7zA 336 :KGNEEIVIKEAKTQVEKGAEVLDVNFG T0333 252 :DISPL 1q7zA 363 :IESQI T0333 287 :GGTVMTAIDAG 1q7zA 373 :EKIVQTLPYVS T0333 298 :IPQLLAPDPRDQFQHTARE 1q7zA 385 :VPLSLDIQNVDLTERALRA T0333 322 :GIGL 1q7zA 406 :GRSL T0333 326 :V 1q7zA 412 :S T0333 327 :STSDKVDADLLRRLI 1q7zA 414 :KVDEEELEMKINLLK T0333 342 :GDESLRTAAREVREEMVALP 1q7zA 446 :SFEERKEYFEKALKILERHD T0333 362 :TPAETVRRIVE 1q7zA 487 :EVLKTIEFISS Number of specific fragments extracted= 21 number of extra gaps= 0 total=618 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w5fA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w5fA expands to /projects/compbio/data/pdb/1w5f.pdb.gz 1w5fA:# T0333 read from 1w5fA/merged-good-all-a2m # 1w5fA read from 1w5fA/merged-good-all-a2m # adding 1w5fA to template set # found chain 1w5fA in template set T0333 2 :LFVS 1w5fA 26 :VIGV T0333 12 :LFPLIQLAWGFRTA 1w5fA 30 :GGAGNNAINRMIEI T0333 26 :GHDVLIAVA 1w5fA 47 :GVEFVAVNT T0333 36 :HADRAAAAGL 1w5fA 56 :DLQVLEASNA T0333 46 :EVVDVAPD 1w5fA 67 :VKIQIGEN T0333 63 :VAKDN 1w5fA 75 :ITRGL T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLA 1w5fA 80 :GAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGA T0333 125 :ADRAGVPAVQRNQSAW 1w5fA 131 :AKEMGILTVAIVTTPF T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 1w5fA 188 :KIKDAFLKADETLHQGVKGISELI T0333 165 :PEPV 1w5fA 214 :RGYI T0333 175 :PPSLL 1w5fA 218 :RLTSR T0333 182 :AEPEGWFMRWVPYGGGAV 1w5fA 227 :ESVMKDAGAAILGIGVGK T0333 200 :LGDRLPPV 1w5fA 258 :ESKLIEHP T0333 208 :PARPEVAITM 1w5fA 267 :ENASSIVFNI T0333 221 :ELQAFGIGAVEPIIAAAGEV 1w5fA 278 :APSNIRMEEVHEAAMIIRQN T0333 241 :D 1w5fA 301 :D T0333 242 :ADFVLALGDL 1w5fA 304 :VKFGLIFDDE T0333 259 :LPRN 1w5fA 314 :VPDD T0333 263 :VRAVGWTPLHT 1w5fA 323 :FIATRFPDEDK Number of specific fragments extracted= 19 number of extra gaps= 0 total=637 Number of alignments=31 # 1w5fA read from 1w5fA/merged-good-all-a2m # found chain 1w5fA in template set T0333 11 :HLFPLIQLAWGFRTA 1w5fA 29 :VGGAGNNAINRMIEI T0333 26 :GHDVLIAVAE 1w5fA 47 :GVEFVAVNTD T0333 37 :ADRAAAAGLEVVDVAPDY 1w5fA 57 :LQVLEASNADVKIQIGEN T0333 72 :ETVATRPAIDLEEWGVQIAAVNR 1w5fA 75 :ITRGLGAGGRPEIGEQAALESEE T0333 99 :GTMALVDDYR 1w5fA 98 :KIREVLQDTH T0333 111 :LVVY 1w5fA 109 :VFIT T0333 115 :EQGATVGLLA 1w5fA 114 :GFGGGTGTGA T0333 125 :ADRAGVPAVQRNQSA 1w5fA 131 :AKEMGILTVAIVTTP T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLPE 1w5fA 151 :PERLKKAIEGLKKLRKHVDTLIKISNN T0333 167 :PVATIE 1w5fA 179 :LMEELP T0333 173 :SFPPS 1w5fA 186 :DVKIK T0333 314 :AREAVSR 1w5fA 222 :RFARIES T0333 321 :RGIGLVSTS 1w5fA 231 :KDAGAAILG T0333 330 :DKVD 1w5fA 245 :GEHR T0333 334 :ADLLRRLI 1w5fA 250 :REAAKKAM T0333 342 :G 1w5fA 281 :N T0333 343 :DESLRTAAREVREEMVAL 1w5fA 283 :RMEEVHEAAMIIRQNSSE T0333 361 :PTPAET 1w5fA 329 :PDEDKI Number of specific fragments extracted= 18 number of extra gaps= 0 total=655 Number of alignments=32 # 1w5fA read from 1w5fA/merged-good-all-a2m # found chain 1w5fA in template set T0333 1 :MLFVSS 1w5fA 24 :IKVIGV T0333 12 :LFPLIQLAWGFRTAGHD 1w5fA 30 :GGAGNNAINRMIEIGIH T0333 29 :VLIAV 1w5fA 48 :VEFVA T0333 34 :AEHADRAAAAGLEVVDVAPDYS 1w5fA 54 :NTDLQVLEASNADVKIQIGENI T0333 66 :DNPRFAETV 1w5fA 76 :TRGLGAGGR T0333 86 :GVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1w5fA 85 :PEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVI T0333 129 :GVPAVQRNQSAWRTRGM 1w5fA 135 :GILTVAIVTTPFYFEGP T0333 146 :HRSIASFLT 1w5fA 153 :RLKKAIEGL T0333 183 :EPEGWFMRWVPYGGGA 1w5fA 231 :KDAGAAILGIGVGKGE T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1w5fA 258 :ESKLIEHPVENASSIVFNITAPS T0333 224 :AFGIGAVEPIIAAAGEV 1w5fA 281 :NIRMEEVHEAAMIIRQN T0333 241 :DADFVLALGD 1w5fA 303 :DVKFGLIFDD T0333 258 :TLPRN 1w5fA 313 :EVPDD Number of specific fragments extracted= 13 number of extra gaps= 0 total=668 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 4uagA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 4uagA/merged-good-all-a2m # 4uagA read from 4uagA/merged-good-all-a2m # found chain 4uagA in training set Warning: unaligning (T0333)L156 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (4uagA)L199 Warning: unaligning (T0333)D158 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (4uagA)L199 Warning: unaligning (T0333)E181 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)I220 Warning: unaligning (T0333)P184 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)I220 Warning: unaligning (T0333)E185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (4uagA)R226 Warning: unaligning (T0333)A303 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)P411 Warning: unaligning (T0333)P304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)P411 T0333 2 :LFVSSPG 4uagA 8 :VVIIGLG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 4uagA 15 :LTGLSCVDFFLARGVTPRVMD T0333 34 :AEHADRAAAA 4uagA 40 :PPGLDKLPEA T0333 45 :LEVVDV 4uagA 50 :VERHTG T0333 53 :DYS 4uagA 56 :SLN T0333 56 :AVKVFEQVAKDN 4uagA 67 :LIVASPGIALAH T0333 91 :AVNRPLVDG 4uagA 79 :PSLSAAADA T0333 100 :TMALVDDYRPDLVVYEQGA 4uagA 95 :IELFCREAQAPIVAITGSN T0333 119 :TVGLLAADRAGVPAVQRNQSAW 4uagA 120 :TLVGEMAKAAGVNVGVGGNIGL T0333 141 :RTRGMHRSIASFLTD 4uagA 182 :DHMDRYPFGLQQYRA T0333 159 :KHQ 4uagA 200 :RIY T0333 165 :PEPVATIESFPPSLLL 4uagA 203 :ENAKVCVVNADDALTM T0333 191 :WVPYGGGAV 4uagA 227 :CVSFGVNMG T0333 200 :LGDRLPP 4uagA 329 :ALNGLHV T0333 209 :ARPEVAITMGT 4uagA 336 :DGTLHLLLGGD T0333 248 :LGDLDISPLGT 4uagA 347 :GKSADFSPLAR T0333 259 :LPRNVRAVGWT 4uagA 360 :NGDNVRLYCFG T0333 270 :PLHTLLRT 4uagA 372 :DGAQLAAL T0333 278 :CTA 4uagA 384 :AEQ T0333 288 :GTVMTAIDA 4uagA 388 :ETMEQAMRL T0333 297 :GIPQLL 4uagA 404 :GDMVLL T0333 305 :DPR 4uagA 412 :ACA T0333 308 :DQFQHTAR 4uagA 417 :DQFKNFEQ T0333 346 :LRTAAREVREE 4uagA 425 :RGNEFARLAKE Number of specific fragments extracted= 24 number of extra gaps= 2 total=692 Number of alignments=34 # 4uagA read from 4uagA/merged-good-all-a2m # found chain 4uagA in training set Warning: unaligning (T0333)I149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (4uagA)L199 Warning: unaligning (T0333)S151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (4uagA)L199 Warning: unaligning (T0333)I171 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)I220 Warning: unaligning (T0333)E172 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)I220 Warning: unaligning (T0333)P205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (4uagA)E245 Warning: unaligning (T0333)H283 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)P411 Warning: unaligning (T0333)H284 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)P411 Warning: unaligning (T0333)G288 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)L416 Warning: unaligning (T0333)R307 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)L416 T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 4uagA 12 :GLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLD T0333 43 :AGLEVVDVA 4uagA 48 :EAVERHTGS T0333 54 :YSAVKV 4uagA 57 :LNDEWL T0333 86 :GVQ 4uagA 63 :MAA T0333 89 :IAAVNRPLVD 4uagA 81 :LSAAADAGIE T0333 99 :GTMALVDDYRPDLVVY 4uagA 94 :DIELFCREAQAPIVAI T0333 115 :EQGA 4uagA 111 :GSNG T0333 119 :TVGLLAADRAGVPAVQRNQSA 4uagA 120 :TLVGEMAKAAGVNVGVGGNIG T0333 140 :WRTRGMHRS 4uagA 188 :PFGLQQYRA T0333 152 :FLTDLMDKHQVSLPEPVAT 4uagA 200 :RIYENAKVCVVNADDALTM T0333 191 :WVPYGGGAVLGDRL 4uagA 227 :CVSFGVNMGDYHLN T0333 209 :ARPEVAITMGTIE 4uagA 335 :VDGTLHLLLGGDG T0333 223 :QAFGIGAVEP 4uagA 348 :KSADFSPLAR T0333 237 :AGEV 4uagA 358 :YLNG T0333 241 :DADFVLALGDL 4uagA 363 :NVRLYCFGRDG T0333 254 :SPLGTLP 4uagA 374 :AQLAALR T0333 261 :RNVRAVGWTP 4uagA 382 :EVAEQTETME T0333 274 :LLR 4uagA 393 :AMR T0333 277 :TCT 4uagA 400 :RVQ T0333 280 :AVV 4uagA 407 :VLL T0333 285 :GGG 4uagA 412 :ACA T0333 308 :DQF 4uagA 417 :DQF T0333 313 :TAREA 4uagA 420 :KNFEQ T0333 346 :LRTAAREVREE 4uagA 425 :RGNEFARLAKE Number of specific fragments extracted= 24 number of extra gaps= 3 total=716 Number of alignments=35 # 4uagA read from 4uagA/merged-good-all-a2m # found chain 4uagA in training set Warning: unaligning (T0333)A247 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)P411 Warning: unaligning (T0333)L248 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)P411 Warning: unaligning (T0333)D252 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (4uagA)L416 Warning: unaligning (T0333)I253 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (4uagA)L416 Warning: unaligning (T0333)P361 because last residue in template chain is (4uagA)G437 T0333 1 :MLFVSSP 4uagA 8 :VVIIGLG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 4uagA 15 :LTGLSCVDFFLARGVTPRVMD T0333 34 :AEHADRAAA 4uagA 40 :PPGLDKLPE T0333 44 :GLEVVDVAPDYSAVKVF 4uagA 49 :AVERHTGSLNDEWLMAA T0333 61 :EQVAKDNP 4uagA 72 :PGIALAHP T0333 85 :WGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT 4uagA 80 :SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNG T0333 120 :VGLLAADRAGVPAVQRNQSAWRTRGMHR 4uagA 121 :LVGEMAKAAGVNVGVGGNIGLPALMLLD T0333 182 :AEPEGWFMRWVPYGGGA 4uagA 333 :LHVDGTLHLLLGGDGKS T0333 199 :VLGDRLPPVPARPEVAITMGTIE 4uagA 352 :FSPLARYLNGDNVRLYCFGRDGA T0333 222 :LQAFGIGA 4uagA 376 :LAALRPEV T0333 230 :VEPIIAAAGEV 4uagA 390 :MEQAMRLLAPR T0333 241 :DADFVL 4uagA 404 :GDMVLL T0333 249 :GDL 4uagA 412 :ACA T0333 254 :SPLGT 4uagA 417 :DQFKN T0333 346 :LRTAAREVREEMVAL 4uagA 422 :FEQRGNEFARLAKEL Number of specific fragments extracted= 15 number of extra gaps= 2 total=731 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o58A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1o58A/merged-good-all-a2m # 1o58A read from 1o58A/merged-good-all-a2m # found chain 1o58A in training set T0333 2 :LFVSSPG 1o58A 56 :IVEPTSG T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEH 1o58A 63 :NMGIAIAMIGAKRGHRVILTMPET T0333 37 :ADRAAAAGLEVVDV 1o58A 92 :RKVLKMLGAELVLT T0333 81 :DLEEWGVQIAAVNRPLVDG 1o58A 106 :PGELGMKGAVEKALEISRE T0333 100 :TMALVDDY 1o58A 138 :NVYSHQFT T0333 108 :RPDLVVYE 1o58A 157 :QIDAFVAG T0333 116 :QGATVGLLAADRA 1o58A 166 :GTGGTISGVGRVL T0333 129 :GVPAVQRNQSAW 1o58A 185 :GVKIVAVEPAKS T0333 174 :FPPSLLLEAEPEGWFMRWVPYGGGAV 1o58A 212 :IGAGFVPKILDRSVIDEVITVEDEEA T0333 236 :AAGEVD 1o58A 266 :VAQKLG T0333 242 :ADFVLAL 1o58A 274 :ARVVTVA T0333 304 :P 1o58A 281 :P Number of specific fragments extracted= 12 number of extra gaps= 0 total=743 Number of alignments=37 # 1o58A read from 1o58A/merged-good-all-a2m # found chain 1o58A in training set T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAE 1o58A 60 :TSGNMGIAIAMIGAKRGHRVILTMPE T0333 37 :A 1o58A 87 :M T0333 38 :DRAAA 1o58A 89 :VERRK T0333 43 :AGLEVVDVAPDY 1o58A 98 :LGAELVLTPGEL T0333 55 :SAVKVFEQVAKDNPRFAETVATR 1o58A 113 :GAVEKALEISRETGAHMLNQFEN T0333 86 :GVQIAAVNRPLVDGTMALVD 1o58A 136 :PYNVYSHQFTTGPEILKQMD T0333 107 :YRPDLVVYE 1o58A 156 :YQIDAFVAG T0333 116 :QGA 1o58A 167 :TGG T0333 119 :TVGLLAADRAG 1o58A 173 :GVGRVLKGFFG T0333 130 :VPAVQRNQSA 1o58A 186 :VKIVAVEPAK T0333 140 :WRTRGMHRSIASFLTDLM 1o58A 231 :TVEDEEAYEMARYLAKKE T0333 167 :PVATIESFPPS 1o58A 263 :ALKVAQKLGPD T0333 191 :WVPYGGGAVLGDRL 1o58A 274 :ARVVTVAPDHAERY Number of specific fragments extracted= 13 number of extra gaps= 0 total=756 Number of alignments=38 # 1o58A read from 1o58A/merged-good-all-a2m # found chain 1o58A in training set T0333 4 :VSSPGIG 1o58A 56 :IVEPTSG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1o58A 63 :NMGIAIAMIGAKRGHRVILTM T0333 34 :A 1o58A 85 :E T0333 35 :EHADRAAAAGLEVVDVAPDYSAVKVF 1o58A 90 :ERRKVLKMLGAELVLTPGELGMKGAV T0333 61 :EQVAKDNPRFAET 1o58A 119 :LEISRETGAHMLN T0333 75 :ATRPAIDLEEWGVQIAAVNRPLV 1o58A 132 :QFENPYNVYSHQFTTGPEILKQM T0333 106 :DYRPDLVVYEQGATVGL 1o58A 155 :DYQIDAFVAGVGTGGTI T0333 123 :LAADRA 1o58A 173 :GVGRVL T0333 129 :GVPAVQRNQSAWRTR 1o58A 185 :GVKIVAVEPAKSPVL T0333 162 :VSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1o58A 200 :SGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEE T0333 222 :LQAFGIGAVEPIIAAAGEV 1o58A 252 :VGISSGANVAAALKVAQKL T0333 241 :DADFVLALGDLD 1o58A 273 :DARVVTVAPDHA T0333 254 :S 1o58A 285 :E Number of specific fragments extracted= 13 number of extra gaps= 0 total=769 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o6cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333/1o6cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0333/1o6cA/merged-good-all-a2m.gz for input Trying 1o6cA/merged-good-all-a2m Error: Couldn't open file 1o6cA/merged-good-all-a2m or 1o6cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aebA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2aebA expands to /projects/compbio/data/pdb/2aeb.pdb.gz 2aebA:Skipped atom 2231, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2233, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2235, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2237, because occupancy 0.290 <= existing 0.710 in 2aebA Skipped atom 2239, because occupancy 0.290 <= existing 0.710 in 2aebA # T0333 read from 2aebA/merged-good-all-a2m # 2aebA read from 2aebA/merged-good-all-a2m # adding 2aebA to template set # found chain 2aebA in template set Warning: unaligning (T0333)A42 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0333)A43 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0333)G44 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0333)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aebA)C45 Warning: unaligning (T0333)Y54 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)A56 Warning: unaligning (T0333)K65 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)A56 Warning: unaligning (T0333)Y114 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0333)E115 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 Warning: unaligning (T0333)Q137 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)H126 Warning: unaligning (T0333)S138 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)H126 Warning: unaligning (T0333)T142 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G138 Warning: unaligning (T0333)R143 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G138 Warning: unaligning (T0333)H272 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0333)T273 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 Warning: unaligning (T0333)H312 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G283 Warning: unaligning (T0333)T313 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G283 T0333 2 :LFVSSPGIGH 2aebA 10 :IIGAPFSKGQ T0333 17 :QLAWGFRTAG 2aebA 26 :EGPTVLRKAG T0333 37 :ADRAA 2aebA 37 :LEKLK T0333 46 :EVVDVAP 2aebA 46 :DVKDYGD T0333 53 :D 2aebA 54 :P T0333 66 :DNPRFAETVAT 2aebA 57 :DIPNDSPFQIV T0333 81 :DL 2aebA 68 :KN T0333 86 :GVQIAAVNRPLVDGTMALVDDYRPDLVV 2aebA 70 :PRSVGKASEQLAGKVAEVKKNGRISLVL T0333 116 :QGATVGLLAADRA 2aebA 100 :DHSLAIGSISGHA T0333 129 :GVPAVQRN 2aebA 117 :DLGVIWVD T0333 139 :AW 2aebA 127 :TD T0333 141 :R 2aebA 136 :T T0333 144 :GMHRSIASFLTDLMDKHQVSLPEPVAT 2aebA 139 :NLHGQPVSFLLKELKGKIPDVPGFSWV T0333 184 :PEGWFMRWVPYGGGAV 2aebA 166 :TPCISAKDIVYIGLRD T0333 200 :LGDRLPPV 2aebA 189 :ILKTLGIK T0333 216 :TMGTIELQAFG 2aebA 197 :YFSMTEVDRLG T0333 227 :IGAVEPIIAAAGEVD 2aebA 209 :GKVMEETLSYLLGRK T0333 242 :ADFVLALG 2aebA 225 :RPIHLSFD T0333 250 :DLDISPLGT 2aebA 235 :GLDPSFTPA T0333 259 :LPR 2aebA 247 :PVV T0333 267 :GWTPL 2aebA 250 :GGLTY T0333 274 :LL 2aebA 257 :GL T0333 288 :GTVMTAIDAGIPQLL 2aebA 259 :YITEEIYKTGLLSGL T0333 303 :A 2aebA 276 :M T0333 304 :PDPR 2aebA 278 :VNPS T0333 314 :A 2aebA 284 :K T0333 343 :DESLRTAAREV 2aebA 285 :TPEEVTRTVNT T0333 367 :VRRIVE 2aebA 296 :AVAITL Number of specific fragments extracted= 28 number of extra gaps= 7 total=797 Number of alignments=40 # 2aebA read from 2aebA/merged-good-all-a2m # found chain 2aebA in template set Warning: unaligning (T0333)H27 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)R6 Warning: unaligning (T0333)D28 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)T7 Warning: unaligning (T0333)A42 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0333)A43 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0333)G44 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0333)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aebA)C45 Warning: unaligning (T0333)N67 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)A56 Warning: unaligning (T0333)P68 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)A56 Warning: unaligning (T0333)Y114 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0333)Q137 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)H126 Warning: unaligning (T0333)S138 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)H126 Warning: unaligning (T0333)H272 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0333)T273 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 Warning: unaligning (T0333)L340 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G283 Warning: unaligning (T0333)I341 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G283 T0333 29 :VLIAVAEHA 2aebA 8 :IGIIGAPFS T0333 38 :DRAA 2aebA 38 :EKLK T0333 46 :EVVDVA 2aebA 46 :DVKDYG T0333 65 :KD 2aebA 53 :LP T0333 69 :RFAETVATRPAIDLEEWGVQIAAVNR 2aebA 57 :DIPNDSPFQIVKNPRSVGKASEQLAG T0333 99 :GTMALVDDYRPDLVV 2aebA 83 :KVAEVKKNGRISLVL T0333 115 :EQGA 2aebA 100 :DHSL T0333 119 :TVGLLAADRAG 2aebA 106 :GSISGHARVHP T0333 130 :VPAVQRN 2aebA 118 :LGVIWVD T0333 139 :A 2aebA 127 :T T0333 140 :WRTRGMHRSIASFLTDLM 2aebA 139 :NLHGQPVSFLLKELKGKI T0333 176 :PSLL 2aebA 157 :PDVP T0333 191 :WVPYGGGAVLGDR 2aebA 161 :GFSWVTPCISAKD T0333 212 :EVAITMGTIE 2aebA 174 :IVYIGLRDVD T0333 223 :QAFG 2aebA 184 :PGEH T0333 227 :IGAVE 2aebA 208 :IGKVM T0333 232 :PIIAAAGEV 2aebA 214 :ETLSYLLGR T0333 241 :DADFVLALG 2aebA 224 :KRPIHLSFD T0333 250 :DLDISPLGTLP 2aebA 235 :GLDPSFTPATG T0333 261 :R 2aebA 249 :V T0333 267 :GWTPL 2aebA 250 :GGLTY T0333 274 :LLR 2aebA 257 :GLY T0333 289 :TVMTAIDAGIP 2aebA 260 :ITEEIYKTGLL T0333 300 :QLLAPDPR 2aebA 273 :LDIMEVNP T0333 339 :R 2aebA 281 :S T0333 342 :GDESLRTAAREVREEM 2aebA 284 :KTPEEVTRTVNTAVAI Number of specific fragments extracted= 26 number of extra gaps= 7 total=823 Number of alignments=41 # 2aebA read from 2aebA/merged-good-all-a2m # found chain 2aebA in template set Warning: unaligning (T0333)A42 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)Q43 Warning: unaligning (T0333)A43 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)Q43 Warning: unaligning (T0333)G44 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E44 Warning: unaligning (T0333)L45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aebA)C45 Warning: unaligning (T0333)Y54 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)A56 Warning: unaligning (T0333)S55 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)A56 Warning: unaligning (T0333)Y114 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G99 Warning: unaligning (T0333)E115 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G99 Warning: unaligning (T0333)Q137 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)H126 Warning: unaligning (T0333)S138 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)H126 Warning: unaligning (T0333)G144 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)L133 Warning: unaligning (T0333)M145 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)L133 Warning: unaligning (T0333)I149 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G138 Warning: unaligning (T0333)A150 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G138 Warning: unaligning (T0333)G228 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)E256 Warning: unaligning (T0333)A229 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)E256 Warning: unaligning (T0333)P255 because of BadResidue code BAD_PEPTIDE in next template residue (2aebA)G283 Warning: unaligning (T0333)L256 because of BadResidue code BAD_PEPTIDE at template residue (2aebA)G283 T0333 1 :MLFVSSPG 2aebA 8 :IGIIGAPF T0333 9 :IGHLFPL 2aebA 21 :RGGVEEG T0333 19 :AWGFRTAG 2aebA 28 :PTVLRKAG T0333 36 :HADRAA 2aebA 36 :LLEKLK T0333 46 :EVVDVA 2aebA 46 :DVKDYG T0333 52 :PD 2aebA 53 :LP T0333 56 :A 2aebA 57 :D T0333 64 :AKDNPRFAETV 2aebA 58 :IPNDSPFQIVK T0333 85 :WGVQIAAVNRPLVDGTMALVDDYRPDLVV 2aebA 69 :NPRSVGKASEQLAGKVAEVKKNGRISLVL T0333 116 :QGATVGLLAADRA 2aebA 100 :DHSLAIGSISGHA T0333 129 :GVPAVQRN 2aebA 117 :DLGVIWVD T0333 139 :AWRTR 2aebA 127 :TDINT T0333 146 :HRS 2aebA 134 :TTT T0333 151 :SFLT 2aebA 139 :NLHG T0333 158 :DKH 2aebA 157 :PDV T0333 165 :PEPVA 2aebA 160 :PGFSW T0333 180 :LEAEPEGWFMRWVPYGGGA 2aebA 165 :VTPCISAKDIVYIGLRDVD T0333 199 :VLGDRLPPVPARPEVAITM 2aebA 213 :EETLSYLLGRKKRPIHLSF T0333 218 :GTIELQAFGI 2aebA 245 :GTPVVGGLTY T0333 230 :VEPIIAAAGEVD 2aebA 257 :GLYITEEIYKTG T0333 242 :ADFVLALG 2aebA 270 :LSGLDIME T0333 251 :LDIS 2aebA 278 :VNPS T0333 328 :TSDKVDADLLRRLI 2aebA 284 :KTPEEVTRTVNTAV Number of specific fragments extracted= 23 number of extra gaps= 8 total=846 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bxrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bxrA expands to /projects/compbio/data/pdb/1bxr.pdb.gz 1bxrA:Skipped atom 5851, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5853, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5855, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5857, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5962, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5964, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5966, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 5968, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 6787, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 6789, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 6791, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 6793, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 6795, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7039, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7041, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7043, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7045, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7047, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7049, because occupancy 0.500 <= existing 0.500 in 1bxrA Skipped atom 7051, because occupancy 0.500 <= existing 0.500 in 1bxrA # T0333 read from 1bxrA/merged-good-all-a2m # 1bxrA read from 1bxrA/merged-good-all-a2m # adding 1bxrA to template set # found chain 1bxrA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1bxrA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1bxrA)D558 T0333 2 :LFVSSPGI 1bxrA 10 :ILILGAGP T0333 10 :GHL 1bxrA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1bxrA 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEH 1bxrA 51 :PAT T0333 39 :RAAAAGL 1bxrA 54 :IMTDPEM T0333 46 :EVVDVAP 1bxrA 62 :DATYIEP T0333 94 :RPL 1bxrA 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1bxrA 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1bxrA 112 :GVT T0333 135 :RNQSA 1bxrA 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1bxrA 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1bxrA 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1bxrA 536 :FATDTAYMYSTYEEEC T0333 204 :LPPV 1bxrA 553 :ANPS T0333 210 :RPEVAITMGT 1bxrA 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1bxrA 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1bxrA 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1bxrA 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1bxrA 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1bxrA 647 :PLKLARA T0333 318 :VSRRGIGLV 1bxrA 654 :LEAAGVPVI T0333 327 :ST 1bxrA 664 :TS T0333 334 :ADLLRRLIG 1bxrA 666 :PDAIDRAED T0333 347 :RTAAREVREE 1bxrA 675 :RERFQHAVER T0333 363 :PAETVRRIVERIS 1bxrA 697 :AIEMAVEKAKEIG Number of specific fragments extracted= 25 number of extra gaps= 1 total=871 Number of alignments=43 # 1bxrA read from 1bxrA/merged-good-all-a2m # found chain 1bxrA in template set Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1bxrA)D558 T0333 2 :LFVSSPGI 1bxrA 12 :ILGAGPIV T0333 10 :GHL 1bxrA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1bxrA 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1bxrA 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1bxrA 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1bxrA 112 :GVT T0333 135 :RNQSA 1bxrA 115 :MIGAT T0333 173 :SFPP 1bxrA 521 :DLHP T0333 188 :FMRWVP 1bxrA 525 :VYKRVD T0333 198 :A 1bxrA 531 :T T0333 200 :LGDRLPPVP 1bxrA 532 :CAAEFATDT T0333 210 :RPEVAITMGTIELQAFGIGA 1bxrA 559 :REKIMVLGGGPNRIGQGIEF T0333 230 :VEPIIAAAGEVDADFVLALGDLD 1bxrA 582 :CVHASLALREDGYETIMVNCNPE T0333 259 :LP 1bxrA 605 :TV T0333 261 :RNVRAVGWT 1bxrA 614 :DRLYFEPVT T0333 271 :LHTLLR 1bxrA 626 :VLEIVR T0333 277 :TCTAVVHHGGGGTVMTAI 1bxrA 634 :KPKGVIVQYGGQTPLKLA T0333 295 :DAGIPQLLAPDPR 1bxrA 656 :AAGVPVIGTSPDA T0333 308 :DQF 1bxrA 674 :DRE T0333 313 :TAREAVSRRG 1bxrA 677 :RFQHAVERLK T0333 361 :P 1bxrA 799 :Y T0333 362 :TPAETVRRIVERIS 1bxrA 801 :LSQEIQDVMRQQVQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=893 Number of alignments=44 # 1bxrA read from 1bxrA/merged-good-all-a2m # found chain 1bxrA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1bxrA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1bxrA)D558 T0333 1 :MLFVSSPGI 1bxrA 10 :ILILGAGPI T0333 10 :GH 1bxrA 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1bxrA 27 :DYSGAQACKALREEGYRVILVN T0333 34 :A 1bxrA 51 :P T0333 43 :AG 1bxrA 58 :PE T0333 45 :LEVVDVAPDY 1bxrA 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1bxrA 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1bxrA 112 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1bxrA 114 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1bxrA 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1bxrA 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1bxrA 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1bxrA 587 :LALREDGYETIMVNCN T0333 251 :LDI 1bxrA 608 :TDY T0333 276 :RTC 1bxrA 611 :DTS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1bxrA 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAPDPRDQF 1bxrA 637 :GVIVQYGGQTP T0333 311 :QHTAREAVSRRGIGL 1bxrA 649 :KLARALEAAGVPVIG T0333 329 :SDKV 1bxrA 665 :SPDA T0333 337 :LRRLIG 1bxrA 669 :IDRAED T0333 350 :AREVREEMVALP 1bxrA 675 :RERFQHAVERLK T0333 362 :TPAETVRRIVER 1bxrA 697 :AIEMAVEKAKEI Number of specific fragments extracted= 22 number of extra gaps= 1 total=915 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c1xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c1xA expands to /projects/compbio/data/pdb/2c1x.pdb.gz 2c1xA:Skipped atom 3135, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3139, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3141, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3143, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3145, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3147, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3149, because occupancy 0.500 <= existing 0.500 in 2c1xA Skipped atom 3151, because occupancy 0.500 <= existing 0.500 in 2c1xA # T0333 read from 2c1xA/merged-good-all-a2m # 2c1xA read from 2c1xA/merged-good-all-a2m # adding 2c1xA to template set # found chain 2c1xA in template set Warning: unaligning (T0333)A41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1xA)Q61 Warning: unaligning (T0333)A51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1xA)Q61 Warning: unaligning (T0333)S327 because of BadResidue code BAD_PEPTIDE in next template residue (2c1xA)T398 Warning: unaligning (T0333)T328 because of BadResidue code BAD_PEPTIDE at template residue (2c1xA)T398 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 2c1xA 11 :AVLAFPFSTHAAPLLAVVRRLAAA T0333 26 :GHDVLIAV 2c1xA 37 :HAVFSFFS T0333 34 :AEHADRA 2c1xA 46 :SQSNASI T0333 52 :PDYSAVKVFEQVAKDNPRFA 2c1xA 62 :CNIKSYDISDGVPEGYVFAG T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDY 2c1xA 82 :RPQEDIELFTRAAPESFRQGMVMAVAE T0333 108 :RPDLVVYEQGATVGLLAADRAGVPAVQRNQSAW 2c1xA 112 :PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGP T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLL 2c1xA 188 :QEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD T0333 188 :FMRWVPYGGGAV 2c1xA 236 :KLKTYLNIGPFN T0333 200 :LGDRLPPVPARPEVAITMGTIELQ 2c1xA 261 :CLQWLKERKPTSVVYISFGTVTTP T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLDISPLGT 2c1xA 285 :PPAEVVALSEALEASRVPFIWSLRDKARVHLPE T0333 259 :LPRNVRAVGWTPLHTLLRT 2c1xA 323 :TRGYGMVVPWAPQAEVLAH T0333 278 :CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 2c1xA 344 :VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRM T0333 318 :VSR 2c1xA 382 :VED T0333 321 :RGIG 2c1xA 386 :LEIG T0333 325 :LV 2c1xA 391 :RI T0333 329 :SDKV 2c1xA 399 :KSGL T0333 334 :ADLLRRLIGDES 2c1xA 403 :MSCFDQILSQEK T0333 346 :LRTAAREVREEMVA 2c1xA 418 :LRENLRALRETADR T0333 360 :LPT 2c1xA 435 :PKG T0333 363 :PAETVRRIVERI 2c1xA 439 :STENFITLVDLV T0333 375 :S 2c1xA 455 :D Number of specific fragments extracted= 21 number of extra gaps= 1 total=936 Number of alignments=46 # 2c1xA read from 2c1xA/merged-good-all-a2m # found chain 2c1xA in template set Warning: unaligning (T0333)V199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1xA)G260 Warning: unaligning (T0333)D330 because of BadResidue code BAD_PEPTIDE at template residue (2c1xA)T398 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTA 2c1xA 11 :AVLAFPFSTHAAPLLAVVRRLAAA T0333 26 :GHDVLIAVAE 2c1xA 37 :HAVFSFFSTS T0333 38 :DRAAA 2c1xA 47 :QSNAS T0333 43 :AGLEVVDVAPDY 2c1xA 62 :CNIKSYDISDGV T0333 72 :ETVATRPAIDLEEWGVQIAAVNRPLV 2c1xA 74 :PEGYVFAGRPQEDIELFTRAAPESFR T0333 99 :GTMALVDD 2c1xA 100 :QGMVMAVA T0333 107 :YRPDLVVYEQGATVGLLAADRAGVPAVQRNQSA 2c1xA 111 :RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAG T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLPEPVATIE 2c1xA 198 :SLFSRMLHRMGQVLPKATAVFINSFEELDDSLT T0333 173 :SFPP 2c1xA 235 :SKLK T0333 191 :WVPYGGG 2c1xA 239 :TYLNIGP T0333 209 :ARPEVAITMGTIE 2c1xA 270 :PTSVVYISFGTVT T0333 222 :LQAFGIGAVEPIIAAA 2c1xA 284 :PPPAEVVALSEALEAS T0333 241 :DADFVLALGDLDISPLGTLP 2c1xA 300 :RVPFIWSLRDKARVHLPEGF T0333 261 :RNVRAVGWTPLHTLLR 2c1xA 325 :GYGMVVPWAPQAEVLA T0333 277 :TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQF 2c1xA 343 :AVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQR T0333 313 :TAREAVSR 2c1xA 377 :LNGRMVED T0333 321 :RGIGLVSTS 2c1xA 386 :LEIGVRIEG T0333 331 :KVD 2c1xA 399 :KSG T0333 334 :ADLLRRLIGD 2c1xA 403 :MSCFDQILSQ T0333 345 :SLRTAAREVREEMVAL 2c1xA 413 :EKGKKLRENLRALRET T0333 361 :PTPAETVRRIVERISG 2c1xA 437 :GSSTENFITLVDLVSK Number of specific fragments extracted= 21 number of extra gaps= 1 total=957 Number of alignments=47 # 2c1xA read from 2c1xA/merged-good-all-a2m # found chain 2c1xA in template set Warning: unaligning (T0333)A41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c1xA)Q61 Warning: unaligning (T0333)V199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c1xA)G260 Warning: unaligning (T0333)T328 because of BadResidue code BAD_PEPTIDE in next template residue (2c1xA)T398 Warning: unaligning (T0333)S329 because of BadResidue code BAD_PEPTIDE at template residue (2c1xA)T398 T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTA 2c1xA 10 :VAVLAFPFSTHAAPLLAVVRRLAAA T0333 26 :GHDVLIAV 2c1xA 37 :HAVFSFFS T0333 34 :AEHADRA 2c1xA 46 :SQSNASI T0333 43 :AGLEVVDVAPDYSAV 2c1xA 62 :CNIKSYDISDGVPEG T0333 63 :VAKD 2c1xA 77 :YVFA T0333 76 :TRPAIDLEEWGVQIAAVNRPLVDGTMALV 2c1xA 81 :GRPQEDIELFTRAAPESFRQGMVMAVAET T0333 106 :DYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 2c1xA 110 :GRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIRE T0333 155 :DLMDKHQVSLPEPVATIESFPPSLL 2c1xA 202 :RMLHRMGQVLPKATAVFINSFEELD T0333 186 :GWFMRWVPY 2c1xA 237 :LKTYLNIGP T0333 200 :LGDRLPPVPARPEVAITMGTIELQ 2c1xA 261 :CLQWLKERKPTSVVYISFGTVTTP T0333 226 :GIGAVEPIIAAAGEVDADFVLALGD 2c1xA 285 :PPAEVVALSEALEASRVPFIWSLRD T0333 254 :SPLGTLPRN 2c1xA 310 :KARVHLPEG T0333 263 :VRAVGWTPLHTLL 2c1xA 327 :GMVVPWAPQAEVL T0333 276 :RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAV 2c1xA 342 :EAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED T0333 319 :SRRGIGLV 2c1xA 386 :LEIGVRIE T0333 327 :S 2c1xA 396 :V T0333 330 :DKVDADLLRRLIGDES 2c1xA 399 :KSGLMSCFDQILSQEK T0333 346 :LRTAAREVREEMVAL 2c1xA 418 :LRENLRALRETADRA T0333 361 :PTPAETVRRIVERISG 2c1xA 437 :GSSTENFITLVDLVSK Number of specific fragments extracted= 19 number of extra gaps= 1 total=976 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3pfk/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 3pfk expands to /projects/compbio/data/pdb/3pfk.pdb.gz 3pfk:Warning: there is no chain 3pfk will retry with 3pfkA # T0333 read from 3pfk/merged-good-all-a2m # 3pfk read from 3pfk/merged-good-all-a2m # adding 3pfk to template set # found chain 3pfk in template set Warning: unaligning (T0333)P165 because of BadResidue code BAD_PEPTIDE at template residue (3pfk)H160 T0333 1 :M 3pfk 1 :M T0333 2 :LFVSSPGIGHLFPLI 3pfk 6 :VLTSGGDSPGMNAAI T0333 17 :QLAWGFRTAGHDVLIAV 3pfk 22 :SVVRKAIYHGVEVYGVY T0333 35 :EHADRAAAA 3pfk 39 :HGYAGLIAG T0333 55 :SAVKVFEQVAKDNPRFAETVATRP 3pfk 48 :NIKKLEVGDVGDIIHRGGTILYTA T0333 81 :DLEEW 3pfk 72 :RCPEF T0333 94 :RPLVDGTMALVDDYRP 3pfk 79 :EEGQKKGIEQLKKHGI T0333 110 :DLVVYE 3pfk 96 :GLVVIG T0333 118 :ATVGLLAADRA 3pfk 102 :GDGSYQGAKKL T0333 129 :GVPAVQRNQSAW 3pfk 116 :GFPCVGVPGTID T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 3pfk 134 :DFTIGFDTALNTVIDAIDKIRDTA T0333 166 :EP 3pfk 161 :ER T0333 170 :TI 3pfk 163 :TY T0333 191 :WVPYGGGAV 3pfk 165 :VIEVMGRHA T0333 200 :LGDRLPPV 3pfk 190 :LIPEADYD T0333 226 :GIGAVEPIIAAAGEVD 3pfk 198 :MNDVIARLKRGHERGK T0333 242 :ADFVLALGDLD 3pfk 215 :HSIIIVAEGVG T0333 253 :ISPLGTLP 3pfk 248 :GHVQRGGS T0333 270 :P 3pfk 256 :P T0333 343 :DESLRTAAREVREE 3pfk 257 :TAFDRVLASRLGAR T0333 357 :MVALPT 3pfk 299 :ALANKH T0333 363 :PAETVRRIVE 3pfk 308 :DQRMYALSKE Number of specific fragments extracted= 22 number of extra gaps= 1 total=998 Number of alignments=49 # 3pfk read from 3pfk/merged-good-all-a2m # found chain 3pfk in template set T0333 1 :M 3pfk 1 :M T0333 2 :LFVSSPGI 3pfk 6 :VLTSGGDS T0333 10 :GHLFPLIQLAWGFRTAGHDVLIA 3pfk 15 :GMNAAIRSVVRKAIYHGVEVYGV T0333 34 :AEHADRAAAAGLEVVDVA 3pfk 38 :YHGYAGLIAGNIKKLEVG T0333 53 :DY 3pfk 56 :DV T0333 65 :KDNPRFAE 3pfk 58 :GDIIHRGG T0333 73 :TVATRPAIDLEEWGV 3pfk 67 :ILYTARCPEFKTEEG T0333 97 :VDGTMALVDDYRP 3pfk 82 :QKKGIEQLKKHGI T0333 110 :DLVVYE 3pfk 96 :GLVVIG T0333 117 :GATVGLLA 3pfk 102 :GDGSYQGA T0333 126 :DRA 3pfk 110 :KKL T0333 129 :GVPAVQRNQSA 3pfk 116 :GFPCVGVPGTI T0333 140 :WRTRGMHRSIA 3pfk 144 :NTVIDAIDKIR T0333 158 :DKHQVSLPEPVATIE 3pfk 164 :YVIEVMGRHAGDIAL T0333 173 :SF 3pfk 185 :GA T0333 191 :WVPYGG 3pfk 187 :ETILIP T0333 222 :LQAFGIGAVEPIIAAAGEV 3pfk 193 :EADYDMNDVIARLKRGHER T0333 241 :DADFVLALGDLDI 3pfk 214 :KHSIIIVAEGVGS T0333 254 :SPLGTLP 3pfk 249 :HVQRGGS T0333 271 :LHTL 3pfk 264 :ASRL T0333 294 :ID 3pfk 268 :GA T0333 313 :TAREAVSRRGIGLVSTS 3pfk 270 :RAVELLLEGKGGRCVGI T0333 330 :DK 3pfk 288 :NN T0333 337 :LRRLIG 3pfk 296 :IAEALA T0333 343 :DESLRTAARE 3pfk 308 :DQRMYALSKE Number of specific fragments extracted= 25 number of extra gaps= 0 total=1023 Number of alignments=50 # 3pfk read from 3pfk/merged-good-all-a2m # found chain 3pfk in template set T0333 1 :MLFVSSPGIGHLF 3pfk 4 :IGVLTSGGDSPGM T0333 14 :PLIQLAWGFRTAGHDVLIAV 3pfk 19 :AIRSVVRKAIYHGVEVYGVY T0333 35 :EHADRAAAAGLEVVD 3pfk 39 :HGYAGLIAGNIKKLE T0333 54 :YSAVKVF 3pfk 54 :VGDVGDI T0333 61 :EQVAKDNPRFAE 3pfk 67 :ILYTARCPEFKT T0333 94 :RPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 3pfk 79 :EEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLT T0333 129 :GVPAVQRNQSAWRT 3pfk 116 :GFPCVGVPGTIDND T0333 175 :PPSLLLEA 3pfk 130 :IPGTDFTI T0333 221 :E 3pfk 138 :G T0333 226 :GIGAVEPIIAAAGEV 3pfk 139 :FDTALNTVIDAIDKI T0333 241 :DADFVLALGD 3pfk 162 :RTYVIEVMGR T0333 284 :HGGGGTVMTAIDAGIPQLLAP 3pfk 172 :HAGDIALWSGLAGGAETILIP T0333 305 :DPRDQFQHTAREAVSRRGIGL 3pfk 197 :DMNDVIARLKRGHERGKKHSI T0333 327 :STSDKVDADLLRRLIG 3pfk 224 :VGSGVDFGRQIQEATG T0333 343 :DESLRTAAREVREE 3pfk 257 :TAFDRVLASRLGAR T0333 366 :TVRRIVE 3pfk 271 :AVELLLE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1039 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pfkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pfkA expands to /projects/compbio/data/pdb/1pfk.pdb.gz 1pfkA:# T0333 read from 1pfkA/merged-good-all-a2m # 1pfkA read from 1pfkA/merged-good-all-a2m # adding 1pfkA to template set # found chain 1pfkA in template set T0333 1 :M 1pfkA 0 :M T0333 2 :LFVSSPGIGHLFPLI 1pfkA 6 :VLTSGGDAPGMNAAI T0333 17 :QLAWGFRTAGHDVLIA 1pfkA 22 :GVVRSALTEGLEVMGI T0333 34 :AEHADRAAAA 1pfkA 38 :YDGYLGLYED T0333 55 :SAVKVFEQVAKDNPRFAETVATRP 1pfkA 48 :RMVQLDRYSVSDMINRGGTFLGSA T0333 81 :DLEEWGV 1pfkA 72 :RFPEFRD T0333 94 :RPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1pfkA 79 :ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLT T0333 129 :GVPAVQRNQSAW 1pfkA 116 :GFPCIGLPGTID T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVATI 1pfkA 134 :DYTIGFFTALSTVVEAIDRLRDTSSSHQRIS T0333 191 :WVPYGGGAV 1pfkA 165 :VVEVMGRYC T0333 209 :ARPEVA 1pfkA 185 :GCEFVV T0333 217 :MGTIELQ 1pfkA 191 :VPEVEFS T0333 226 :GIGAVEPIIAAAGEV 1pfkA 198 :REDLVNEIKAGIAKG T0333 241 :DADFVLALGDLD 1pfkA 214 :KHAIVAITEHMC T0333 253 :ISPLGT 1pfkA 248 :GHIQRG T0333 286 :G 1pfkA 254 :G T0333 304 :PDPRD 1pfkA 256 :PVPYD T0333 309 :QFQHTAR 1pfkA 264 :ASRMGAY T0333 318 :VSR 1pfkA 271 :AID T0333 321 :RGIG 1pfkA 277 :AGYG T0333 325 :LV 1pfkA 282 :RC T0333 327 :STSDKV 1pfkA 286 :IQNEQL T0333 337 :LRRLI 1pfkA 296 :IIDAI T0333 342 :GDESLRTAARE 1pfkA 307 :FKGDWLDCAKK Number of specific fragments extracted= 24 number of extra gaps= 0 total=1063 Number of alignments=52 # 1pfkA read from 1pfkA/merged-good-all-a2m # found chain 1pfkA in template set T0333 1 :M 1pfkA 0 :M T0333 2 :LFVSSPGI 1pfkA 6 :VLTSGGDA T0333 10 :GHLFPLIQLAWGFRTAGHDVLIA 1pfkA 15 :GMNAAIRGVVRSALTEGLEVMGI T0333 36 :HADRAAAAGLEVVDVAPDYS 1pfkA 38 :YDGYLGLYEDRMVQLDRYSV T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIA 1pfkA 58 :SDMINRGGTFLGSARFPEFRDENIRA T0333 99 :GTMALVDDYRPDLVVY 1pfkA 84 :VAIENLKKRGIDALVV T0333 115 :E 1pfkA 101 :G T0333 117 :GATVGLLAADRA 1pfkA 102 :GDGSYMGAMRLT T0333 129 :GVPAVQRNQSA 1pfkA 116 :GFPCIGLPGTI T0333 140 :WRTRGMHRSIASF 1pfkA 144 :STVVEAIDRLRDT T0333 158 :DKHQVSLPEPVATIE 1pfkA 164 :SVVEVMGRYCGDLTL T0333 173 :SFPPS 1pfkA 181 :AIAGG T0333 191 :WVPYGGGAVLGDR 1pfkA 186 :CEFVVVPEVEFSR T0333 228 :GAVEPIIAAAGEV 1pfkA 199 :EDLVNEIKAGIAK T0333 241 :DADFVLALGDLDI 1pfkA 214 :KHAIVAITEHMCD T0333 254 :SPLGTLP 1pfkA 249 :HIQRGGS T0333 268 :WTP 1pfkA 256 :PVP T0333 308 :DQFQHTAREAVSRRGIGLVSTS 1pfkA 265 :SRMGAYAIDLLLAGYGGRCVGI T0333 330 :DK 1pfkA 288 :NE T0333 337 :LRRLIG 1pfkA 296 :IIDAIE T0333 343 :DESLRTAARE 1pfkA 308 :KGDWLDCAKK Number of specific fragments extracted= 21 number of extra gaps= 0 total=1084 Number of alignments=53 # 1pfkA read from 1pfkA/merged-good-all-a2m # found chain 1pfkA in template set T0333 1 :MLFVSSPG 1pfkA 4 :IGVLTSGG T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 1pfkA 14 :PGMNAAIRGVVRSALTEGLEVMGIY T0333 35 :EHADRAAAA 1pfkA 39 :DGYLGLYED T0333 46 :EVVDVA 1pfkA 48 :RMVQLD T0333 54 :YSAVKVFEQVAKDNPRFAETVATRPAID 1pfkA 54 :RYSVSDMINRGGTFLGSARFPEFRDENI T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1pfkA 82 :RAVAIENLKKRGIDALVVIGGDGSYMGAMRLT T0333 129 :GVPAVQRNQSAWRTRGMHRSIA 1pfkA 116 :GFPCIGLPGTIDNDIKGTDYTI T0333 225 :FGIGAVEPIIAAAGEV 1pfkA 138 :GFFTALSTVVEAIDRL T0333 241 :DADFVLALGD 1pfkA 162 :RISVVEVMGR T0333 252 :D 1pfkA 172 :Y T0333 285 :GGGGTVMTAIDAGIPQLLAPD 1pfkA 173 :CGDLTLAAAIAGGCEFVVVPE T0333 327 :STSDKVDADLLRRLIGDE 1pfkA 195 :EFSREDLVNEIKAGIAKG T0333 359 :ALPTPAETVRRIVERI 1pfkA 223 :HMCDVDELAHFIEKET Number of specific fragments extracted= 13 number of extra gaps= 0 total=1097 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wqaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wqaA expands to /projects/compbio/data/pdb/1wqa.pdb.gz 1wqaA:# T0333 read from 1wqaA/merged-good-all-a2m # 1wqaA read from 1wqaA/merged-good-all-a2m # adding 1wqaA to template set # found chain 1wqaA in template set T0333 13 :FPLIQLAWGFRTAG 1wqaA 25 :KIGMAFGTLLKREG T0333 27 :HDVLIAV 1wqaA 42 :PLVVVGR T0333 34 :A 1wqaA 51 :R T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYE 1wqaA 52 :VSGEMLKEALISGLLSVGCDVIDVG T0333 116 :QGATVGLLAADRAGVPAVQRNQSAW 1wqaA 78 :APTPAVQWATKHFNADGGAVITASH T0333 141 :RTRGMHRSIASFLTDLMDK 1wqaA 116 :NGMGLKKEREAIVEELFFK T0333 160 :HQVSLPEPVAT 1wqaA 136 :DFDRAKWYEIG T0333 185 :E 1wqaA 147 :E T0333 189 :MRWVPYGGGAV 1wqaA 148 :VRREDIIKPYI T0333 200 :LGDRLP 1wqaA 161 :IKSKVD T0333 210 :RPEVAITMGT 1wqaA 174 :KPFVVVDTSN T0333 220 :IELQ 1wqaA 185 :AGSL T0333 225 :F 1wqaA 189 :T T0333 233 :IIAAAGEVDADFVLALGDLD 1wqaA 190 :LPYLLRELGCKVITVNAQPD T0333 278 :CTAVVHHG 1wqaA 236 :ADFGVAQD T0333 286 :GGGTVMTAIDA 1wqaA 261 :GDKTFALVADA T0333 297 :GIPQLLAPDP 1wqaA 277 :GGGLLVTTVA T0333 318 :VSRRGIG 1wqaA 295 :AKKHGAK T0333 325 :LV 1wqaA 303 :MR T0333 327 :STS 1wqaA 381 :GDR T0333 334 :ADLLRRLI 1wqaA 384 :HAIVNKVA T0333 342 :GDES 1wqaA 434 :KSKE T0333 346 :LRTAAREVREE 1wqaA 442 :YLNLGIELLEK Number of specific fragments extracted= 23 number of extra gaps= 0 total=1120 Number of alignments=55 # 1wqaA read from 1wqaA/merged-good-all-a2m # found chain 1wqaA in template set T0333 12 :LFPLIQLAWGFRTAG 1wqaA 24 :MKIGMAFGTLLKREG T0333 27 :HDVLIAVA 1wqaA 42 :PLVVVGRD T0333 52 :PDYSAVKVFE 1wqaA 50 :TRVSGEMLKE T0333 99 :GTMALVDDYRPDLVVYE 1wqaA 60 :ALISGLLSVGCDVIDVG T0333 116 :QGATVGLLAADRAGVPAVQRNQSA 1wqaA 78 :APTPAVQWATKHFNADGGAVITAS T0333 140 :WRTRGMHRSIASFLTDLM 1wqaA 148 :VRREDIIKPYIEAIKSKV T0333 158 :DKHQVSLPEPVATIE 1wqaA 175 :PFVVVDTSNGAGSLT T0333 173 :SF 1wqaA 198 :GC T0333 191 :WVPYG 1wqaA 200 :KVITV T0333 197 :GAVLGDRLPPVPARP 1wqaA 205 :NAQPDGYFPARNPEP T0333 223 :QAFGIGAVEPIIAAA 1wqaA 220 :NEENLKEFMEIVKAL T0333 241 :DADFVLALGDLDI 1wqaA 235 :GADFGVAQDGDAD T0333 255 :PLGTLP 1wqaA 254 :ENGRFI T0333 261 :RNVRAVGWT 1wqaA 277 :GGGLLVTTV T0333 270 :P 1wqaA 288 :S T0333 271 :LHTLLR 1wqaA 291 :LDDIAK T0333 277 :TCTAVVHHGGGGTVMTAIDAGIPQLLAPDP 1wqaA 299 :GAKVMRTKVGDLIVARALYENNGTIGGEEN T0333 307 :R 1wqaA 381 :G T0333 308 :DQFQHTAREAVSRRG 1wqaA 384 :HAIVNKVAEMARERG T0333 323 :IGLVSTS 1wqaA 414 :GWVLVRA T0333 342 :GDESLRTAAREVREEMVA 1wqaA 434 :KSKEKAQEYLNLGIELLE Number of specific fragments extracted= 21 number of extra gaps= 0 total=1141 Number of alignments=56 # 1wqaA read from 1wqaA/merged-good-all-a2m # found chain 1wqaA in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1wqaA 44 :VVVGRDTRVSGEMLKEALISGLLSVGCDVIDVG T0333 34 :AEHADRAAAAGLEVVDV 1wqaA 81 :PAVQWATKHFNADGGAV T0333 51 :APDYSA 1wqaA 100 :ASHNPP T0333 66 :DNPRFAETVATRP 1wqaA 135 :EDFDRAKWYEIGE T0333 83 :EEWGVQIAAVNRPLVD 1wqaA 151 :EDIIKPYIEAIKSKVD T0333 101 :MALVDDYRPDLVVY 1wqaA 167 :VEAIKKRKPFVVVD T0333 115 :EQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASF 1wqaA 184 :GAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEPNE T0333 155 :DLMDKHQVSLPEPVATIESFPPSL 1wqaA 222 :ENLKEFMEIVKALGADFGVAQDGD T0333 186 :GWFMRWVPYGGGA 1wqaA 246 :ADRAVFIDENGRF T0333 202 :DRLPPVPARPEVAITMGTIE 1wqaA 270 :DAVLKEKGGGLLVTTVATSN T0333 232 :PIIAAAGEVDADFVLALGDL 1wqaA 290 :LLDDIAKKHGAKVMRTKVGD T0333 310 :FQHTAREAVSRRGIGL 1wqaA 310 :LIVARALYENNGTIGG T0333 333 :DADLLRR 1wqaA 360 :FSELIDE T0333 343 :DESLRTAAREVREEMVALP 1wqaA 380 :EGDRHAIVNKVAEMARERG Number of specific fragments extracted= 14 number of extra gaps= 0 total=1155 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3jA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3jA expands to /projects/compbio/data/pdb/1c3j.pdb.gz 1c3jA:# T0333 read from 1c3jA/merged-good-all-a2m # 1c3jA read from 1c3jA/merged-good-all-a2m # adding 1c3jA to template set # found chain 1c3jA in template set Warning: unaligning (T0333)D81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1c3jA)N77 Warning: unaligning (T0333)A91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1c3jA)N77 Warning: unaligning (T0333)T119 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1c3jA)A118 T0333 1 :M 1c3jA 1 :M T0333 2 :LFVSSPGI 1c3jA 3 :IAIINMGN T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHAD 1c3jA 21 :SETIYLFKVISEMGLNVDIISLKNGV T0333 47 :VVDVAPDYS 1c3jA 47 :YTKSFDEVD T0333 60 :FE 1c3jA 65 :VN T0333 95 :PLVDGTMALVDDY 1c3jA 78 :LAILSAQKFMAKY T0333 108 :RPDLVVYE 1c3jA 93 :KIYYLFTD T0333 116 :QGA 1c3jA 104 :PFS T0333 129 :GVPAVQRNQS 1c3jA 129 :KSPIKVISQG T0333 144 :GMHR 1c3jA 139 :INLD T0333 152 :FLTDLMDKH 1c3jA 143 :IAKAAHKKV T0333 165 :PEPVATIESFPPSLLLEAEPEGWFMR 1c3jA 152 :DNVIEFEYFPIEQYKIHMNDFQLSKP T0333 209 :ARPEV 1c3jA 178 :TKKTL T0333 214 :AITMGTIELQAF 1c3jA 184 :VIYGGSFRSGQR T0333 230 :VEPIIAAAGEVDADFVLA 1c3jA 196 :ESKMVEFLFDTGLNIEFF T0333 249 :GDLDISPLGT 1c3jA 214 :GNAREKQFKN T0333 259 :LPRNVRAVGWTPLHTLLRT 1c3jA 228 :WTKAPVFTGKIPMNMVSEK T0333 278 :CTAVVHHG 1c3jA 250 :AIAALIIG T0333 288 :GTVMTAIDAGIPQLLA 1c3jA 268 :LRVWETMASDAVMLID T0333 315 :R 1c3jA 291 :R T0333 325 :LV 1c3jA 292 :II T0333 327 :STSDKV 1c3jA 301 :NNRAEL T0333 334 :ADLLRRLIGDESLRTAA 1c3jA 307 :IDRVNELKHSDVLRKEM T0333 351 :REVREEMVA 1c3jA 328 :HDILNKTRA T0333 363 :PAETVRRIVERI 1c3jA 337 :KKAEWQDAFKKA Number of specific fragments extracted= 25 number of extra gaps= 0 total=1180 Number of alignments=58 # 1c3jA read from 1c3jA/merged-good-all-a2m # found chain 1c3jA in template set Warning: unaligning (T0333)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1c3jA)A118 T0333 11 :HLFPLIQLAWGFRTAGHDVLIAVAE 1c3jA 19 :PSSETIYLFKVISEMGLNVDIISLK T0333 65 :KDNP 1c3jA 44 :NGVY T0333 75 :ATRPAIDLEE 1c3jA 49 :KSFDEVDVND T0333 109 :P 1c3jA 59 :Y T0333 110 :DLVVYE 1c3jA 61 :RLIVVN T0333 119 :TVGLLAADRAGVPAVQRNQSA 1c3jA 81 :LSAQKFMAKYKSKIYYLFTDI T0333 143 :RGMHRSIA 1c3jA 119 :YLYTEEEL T0333 158 :DKHQVSLPEPVATIE 1c3jA 131 :PIKVISQGINLDIAK T0333 173 :SFPP 1c3jA 150 :KVDN T0333 191 :WVPYGGGAVLG 1c3jA 154 :VIEFEYFPIEQ T0333 202 :DRLPPVP 1c3jA 170 :NDFQLSK T0333 209 :ARPEVAITMGTIE 1c3jA 179 :KKTLDVIYGGSFR T0333 223 :QAFGIGAVEPIIAAA 1c3jA 192 :SGQRESKMVEFLFDT T0333 241 :DADFVLALG 1c3jA 207 :GLNIEFFGN T0333 250 :DLDISPLGTLP 1c3jA 217 :REKQFKNPKYP T0333 261 :RNVRAVGWTPLHTLLR 1c3jA 230 :KAPVFTGKIPMNMVSE T0333 277 :TCTAVVHHG 1c3jA 249 :QAIAALIIG T0333 286 :GGGTVMTAIDAGIPQLLA 1c3jA 266 :ITLRVWETMASDAVMLID T0333 308 :DQ 1c3jA 296 :AR T0333 325 :LVST 1c3jA 298 :FYVN T0333 330 :DKVD 1c3jA 302 :NRAE T0333 334 :ADLLRRLIGDESLRTAAREVREEMVALP 1c3jA 307 :IDRVNELKHSDVLRKEMLSIQHDILNKT T0333 362 :TPAETVRRIVERIS 1c3jA 337 :KKAEWQDAFKKAID Number of specific fragments extracted= 23 number of extra gaps= 0 total=1203 Number of alignments=59 # 1c3jA read from 1c3jA/merged-good-all-a2m # found chain 1c3jA in template set Warning: unaligning (T0333)Q116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1c3jA)N77 Warning: unaligning (T0333)H146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1c3jA)A118 T0333 1 :MLFVSSPG 1c3jA 3 :IAIINMGN T0333 11 :HLFPLIQLAWGFRTAGHDVLIAV 1c3jA 19 :PSSETIYLFKVISEMGLNVDIIS T0333 34 :A 1c3jA 44 :N T0333 45 :LEVVDVAPDYSAVKVF 1c3jA 45 :GVYTKSFDEVDVNDYD T0333 110 :DLVVYE 1c3jA 61 :RLIVVN T0333 117 :GATVGLLAADRAGVPAVQRNQSAWRTRGM 1c3jA 79 :AILSAQKFMAKYKSKIYYLFTDIRLPFSQ T0333 155 :DLMDKHQVSLPEPVATIESFPP 1c3jA 119 :YLYTEEELLIKSPIKVISQGIN T0333 182 :AEPEGWFMRWVPYGGGA 1c3jA 148 :HKKVDNVIEFEYFPIEQ T0333 199 :VLGDRLPPVPARPEVAITMGTIELQAFG 1c3jA 168 :HMNDFQLSKPTKKTLDVIYGGSFRSGQR T0333 230 :VEPIIAAAGEVDADFVLA 1c3jA 196 :ESKMVEFLFDTGLNIEFF T0333 249 :GDLDISPL 1c3jA 214 :GNAREKQF T0333 257 :GTLPRNVRAVGWTPLHTLL 1c3jA 226 :YPWTKAPVFTGKIPMNMVS T0333 276 :RTCTAVVHHG 1c3jA 248 :SQAIAALIIG T0333 287 :GGTVMTAIDAGIPQLLA 1c3jA 267 :TLRVWETMASDAVMLID T0333 327 :STSDKVDADLLRRLIGDESLRTAA 1c3jA 300 :VNNRAELIDRVNELKHSDVLRKEM T0333 351 :REVREEMVA 1c3jA 325 :SIQHDILNK T0333 360 :LPTPAETVRRIVERIS 1c3jA 335 :RAKKAEWQDAFKKAID Number of specific fragments extracted= 17 number of extra gaps= 0 total=1220 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ofuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ofuA expands to /projects/compbio/data/pdb/1ofu.pdb.gz 1ofuA:# T0333 read from 1ofuA/merged-good-all-a2m # 1ofuA read from 1ofuA/merged-good-all-a2m # adding 1ofuA to template set # found chain 1ofuA in template set T0333 2 :LFVS 1ofuA 16 :VIGV T0333 12 :LFPLIQLAWGFRTAG 1ofuA 20 :GGGGGNAVNHMAKNN T0333 27 :HDVLIAV 1ofuA 38 :VEFICAN T0333 34 :AEHAD 1ofuA 47 :AQALK T0333 44 :GLEVVDV 1ofuA 52 :NIAARTV T0333 57 :VKVFEQVAKDNPRFA 1ofuA 59 :LQLGPGVTKGLGAGA T0333 81 :DLE 1ofuA 74 :NPE T0333 88 :QIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1ofuA 77 :VGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPII T0333 129 :GVPAVQRNQSAW 1ofuA 125 :GILTVAVVTRPF T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 1ofuA 178 :SLLAAFAKADDVLAGAVRGISDII T0333 165 :PEPVA 1ofuA 204 :PGMIN T0333 175 :PPS 1ofuA 209 :VDF T0333 181 :EA 1ofuA 217 :VM T0333 184 :PEG 1ofuA 219 :SEM T0333 187 :WFMRWVPYGGGAV 1ofuA 224 :AMMGTGCASGPNR T0333 200 :LGDRLPPVPARPE 1ofuA 249 :LLEDVNLQGARGI T0333 213 :VAITMG 1ofuA 263 :VNITAG T0333 223 :QAFGIGAVEPIIAAAGEV 1ofuA 269 :PDLSLGEYSDVGNIIEQF T0333 241 :D 1ofuA 290 :H T0333 242 :ADFVLALGDLDISP 1ofuA 293 :VKVGTVIDADMRDE Number of specific fragments extracted= 20 number of extra gaps= 0 total=1240 Number of alignments=61 # 1ofuA read from 1ofuA/merged-good-all-a2m # found chain 1ofuA in template set T0333 13 :FPLIQLAWGFRTAGHD 1ofuA 21 :GGGGNAVNHMAKNNVE T0333 29 :VLIAV 1ofuA 38 :VEFIC T0333 34 :AEHADRAAAAGLEVVDVAPDY 1ofuA 44 :NTDAQALKNIAARTVLQLGPG T0333 72 :ETVATRPAIDLEEWGVQIAAVNR 1ofuA 65 :VTKGLGAGANPEVGRQAALEDRE T0333 99 :GTMALVDD 1ofuA 88 :RISEVLEG T0333 109 :PDLVVY 1ofuA 96 :ADMVFI T0333 115 :EQGA 1ofuA 104 :GMGG T0333 119 :TVGLLA 1ofuA 112 :GAAPII T0333 125 :ADRAGVPAVQRNQSA 1ofuA 121 :AKEMGILTVAVVTRP T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLPEPVATIE 1ofuA 141 :RKRMQIADEGIRALAESVDSLITIPNEKLLTIL T0333 173 :SFP 1ofuA 176 :DAS T0333 223 :QAFGIGAVEPIIAAAGE 1ofuA 179 :LLAAFAKADDVLAGAVR T0333 289 :TVMTAID 1ofuA 196 :GISDIIK T0333 304 :PDPR 1ofuA 204 :PGMI T0333 308 :DQF 1ofuA 210 :DFA T0333 313 :TAREAV 1ofuA 213 :DVKTVM T0333 321 :RGIGLVSTS 1ofuA 219 :SEMGMAMMG T0333 330 :DKVD 1ofuA 233 :GPNR T0333 334 :ADLLRRLI 1ofuA 238 :REATEAAI T0333 342 :G 1ofuA 270 :D T0333 343 :DESLRTAAREVREEMVAL 1ofuA 272 :SLGEYSDVGNIIEQFASE Number of specific fragments extracted= 21 number of extra gaps= 0 total=1261 Number of alignments=62 # 1ofuA read from 1ofuA/merged-good-all-a2m # found chain 1ofuA in template set T0333 1 :MLFVSS 1ofuA 14 :IKVIGV T0333 12 :LFPLIQLAWGFRTAGHD 1ofuA 20 :GGGGGNAVNHMAKNNVE T0333 44 :GLEVVDVAPDYSAVKVF 1ofuA 37 :GVEFICANTDAQALKNI T0333 61 :EQVAKDNPRFA 1ofuA 64 :GVTKGLGAGAN T0333 86 :GVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT 1ofuA 75 :PEVGRQAALEDRERISEVLEGADMVFITTGMGGG T0333 120 :VGLLAADRA 1ofuA 113 :AAPIIAEVA T0333 129 :GVPAVQRNQSAWRTRGMH 1ofuA 125 :GILTVAVVTRPFPFEGRK T0333 158 :DKHQVSLPEPVATIE 1ofuA 211 :FADVKTVMSEMGMAM T0333 189 :MRWVPYGGGA 1ofuA 226 :MGTGCASGPN T0333 199 :VLGDRLPPVPARP 1ofuA 248 :PLLEDVNLQGARG T0333 212 :EVAITMGTI 1ofuA 262 :LVNITAGPD T0333 225 :FGIGAVEPIIAAAGEV 1ofuA 271 :LSLGEYSDVGNIIEQF T0333 241 :DADFVLALGD 1ofuA 292 :TVKVGTVIDA T0333 258 :TLPRNVR 1ofuA 302 :DMRDELH Number of specific fragments extracted= 14 number of extra gaps= 0 total=1275 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a9xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1a9xA/merged-good-all-a2m # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)D558 T0333 2 :LFVSSPGI 1a9xA 10 :ILILGAGP T0333 10 :GHL 1a9xA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1a9xA 28 :YSGAQACKALREEGYRVINVN T0333 34 :AEHADRAAAA 1a9xA 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1a9xA 61 :ADATYIEP T0333 94 :RPL 1a9xA 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1a9xA 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1a9xA 112 :GVT T0333 136 :NQSAW 1a9xA 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1a9xA 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1a9xA 521 :DLHPVYKRVDTCAAE T0333 199 :V 1a9xA 536 :F T0333 200 :LGDR 1a9xA 547 :YEEE T0333 204 :LPPV 1a9xA 553 :ANPS T0333 210 :RPEVAITMGT 1a9xA 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLAL 1a9xA 572 :IGQGIEFDYCCVHASLALREDGYETIMVN T0333 277 :T 1a9xA 611 :D T0333 278 :CTAVVHHG 1a9xA 613 :SDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1a9xA 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1a9xA 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1a9xA 647 :PLKLARA T0333 318 :VSRRGIG 1a9xA 654 :LEAAGVP T0333 325 :LVST 1a9xA 662 :IGTS T0333 334 :ADLLRRLIG 1a9xA 666 :PDAIDRAED T0333 347 :RTAAREVREEMV 1a9xA 675 :RERFQHAVERLK T0333 362 :TPAETVRRIVERI 1a9xA 696 :TAIEMAVEKAKEI Number of specific fragments extracted= 26 number of extra gaps= 1 total=1301 Number of alignments=64 # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set T0333 2 :LF 1a9xA 12 :IL T0333 5 :SSPGI 1a9xA 15 :AGPIV T0333 10 :GHL 1a9xA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1a9xA 28 :YSGAQACKALREEGYRVINVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1a9xA 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1a9xA 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1a9xA 112 :GVT T0333 135 :RNQSA 1a9xA 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1a9xA 800 :TLSQEIQDVMRQQVQKLA T0333 168 :VA 1a9xA 874 :LA T0333 173 :SFPPSLLL 1a9xA 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1a9xA 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1a9xA 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVL 1a9xA 950 :REGDKERVVDLAAKLLKQGFELDA Number of specific fragments extracted= 14 number of extra gaps= 0 total=1315 Number of alignments=65 # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)D558 T0333 1 :MLFVSSPGI 1a9xA 10 :ILILGAGPI T0333 10 :GH 1a9xA 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1a9xA 27 :DYSGAQACKALREEGYRVINVN T0333 34 :AEHA 1a9xA 51 :PATI T0333 40 :AAAAG 1a9xA 55 :MTDPE T0333 45 :LEVVDVAPDY 1a9xA 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1a9xA 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1a9xA 112 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1a9xA 114 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1a9xA 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 204 :LPPV 1a9xA 553 :ANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1a9xA 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1a9xA 587 :LALREDGYETIMVNCN T0333 275 :LRTC 1a9xA 610 :YDTS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1a9xA 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1a9xA 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1a9xA 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1a9xA 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1a9xA 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1a9xA 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=1335 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 6pfkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 6pfkA expands to /projects/compbio/data/pdb/6pfk.pdb.gz 6pfkA:Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 6pfkA Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 6pfkA Skipped atom 1879, because occupancy 0.500 <= existing 0.500 in 6pfkA Skipped atom 1881, because occupancy 0.500 <= existing 0.500 in 6pfkA Skipped atom 1883, because occupancy 0.500 <= existing 0.500 in 6pfkA Skipped atom 1885, because occupancy 0.500 <= existing 0.500 in 6pfkA # T0333 read from 6pfkA/merged-good-all-a2m # 6pfkA read from 6pfkA/merged-good-all-a2m # adding 6pfkA to template set # found chain 6pfkA in template set Warning: unaligning (T0333)T24 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)H30 Warning: unaligning (T0333)A25 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)H30 Warning: unaligning (T0333)S55 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)I49 Warning: unaligning (T0333)A56 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)I49 Warning: unaligning (T0333)P68 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)H62 Warning: unaligning (T0333)R69 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)H62 Warning: unaligning (T0333)E83 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)T78 Warning: unaligning (T0333)E84 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)T78 Warning: unaligning (T0333)R141 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)F135 Warning: unaligning (T0333)T142 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)F135 Warning: unaligning (T0333)T170 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)Y164 Warning: unaligning (T0333)I171 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)Y164 Warning: unaligning (T0333)E221 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)E193 Warning: unaligning (T0333)L222 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)E193 Warning: unaligning (T0333)I227 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)N199 Warning: unaligning (T0333)S254 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)V250 Warning: unaligning (T0333)P255 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)V250 T0333 1 :M 6pfkA 1 :M T0333 2 :LFVSSPGIGHLFPLI 6pfkA 6 :VLTSGGDSPGMNAAI T0333 17 :QLAWGFR 6pfkA 22 :SVVRKAI T0333 26 :GHDVLIAV 6pfkA 31 :GVEVYGVY T0333 35 :EHADRAAAA 6pfkA 39 :HGYAGLIAG T0333 57 :VKVFEQVAKDN 6pfkA 50 :KKLEVGDVGDI T0333 70 :FAETVATRPAI 6pfkA 63 :RGGTILYTARC T0333 81 :DL 6pfkA 75 :EF T0333 94 :RPLVDGTMALVDDYRP 6pfkA 79 :EEGQKKGIEQLKKHGI T0333 110 :DLVVYE 6pfkA 96 :GLVVIG T0333 118 :ATVGLLAADRA 6pfkA 102 :GDGSYQGAKKL T0333 129 :GVPAVQRNQSAW 6pfkA 116 :GFPCVGVPGTID T0333 143 :RGMHRSIASFLTDLMDKHQVSLPEPVA 6pfkA 136 :TIGFDTALNTVIDAIDKIRDTATSHER T0333 172 :E 6pfkA 165 :V T0333 192 :VPYGGGAV 6pfkA 166 :IEVMGRHA T0333 209 :ARPEVA 6pfkA 185 :GAETIL T0333 220 :I 6pfkA 191 :I T0333 223 :QAFG 6pfkA 194 :ADYD T0333 228 :GAVEPIIAAAGEV 6pfkA 200 :DVIARLKRGHERG T0333 241 :DADFVLALGDLD 6pfkA 214 :KHSIIIVAEGVG T0333 253 :I 6pfkA 248 :G T0333 256 :LGTLP 6pfkA 251 :QRGGS T0333 304 :PDPRD 6pfkA 256 :PTAFD T0333 309 :QFQHTAR 6pfkA 264 :ASRLGAR T0333 318 :VSR 6pfkA 271 :AVE T0333 321 :RGIG 6pfkA 277 :EGKG T0333 325 :LV 6pfkA 282 :RC T0333 327 :ST 6pfkA 294 :HD T0333 337 :LRRLIG 6pfkA 296 :IAEALA T0333 343 :DESLRTAARE 6pfkA 308 :DQRMYALSKE Number of specific fragments extracted= 30 number of extra gaps= 9 total=1365 Number of alignments=67 # 6pfkA read from 6pfkA/merged-good-all-a2m # found chain 6pfkA in template set Warning: unaligning (T0333)T24 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)H30 Warning: unaligning (T0333)A25 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)H30 Warning: unaligning (T0333)G44 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)I49 Warning: unaligning (T0333)L45 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)I49 Warning: unaligning (T0333)P68 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)H62 Warning: unaligning (T0333)E83 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)T78 Warning: unaligning (T0333)E84 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)T78 Warning: unaligning (T0333)R141 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)F135 Warning: unaligning (T0333)T142 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)F135 Warning: unaligning (T0333)V192 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)Y164 Warning: unaligning (T0333)P193 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)Y164 Warning: unaligning (T0333)E221 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)E193 Warning: unaligning (T0333)L222 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)E193 Warning: unaligning (T0333)I227 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)N199 Warning: unaligning (T0333)G228 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)N199 Warning: unaligning (T0333)S254 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)V250 Warning: unaligning (T0333)P255 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)V250 Warning: unaligning (T0333)D330 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)N289 Warning: unaligning (T0333)K331 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)N289 T0333 1 :M 6pfkA 1 :M T0333 2 :LFVSSPGI 6pfkA 6 :VLTSGGDS T0333 10 :GHLFPLIQLAWGFR 6pfkA 15 :GMNAAIRSVVRKAI T0333 26 :GHDVLIA 6pfkA 31 :GVEVYGV T0333 34 :AEHADRAAAA 6pfkA 38 :YHGYAGLIAG T0333 46 :EVVDVA 6pfkA 50 :KKLEVG T0333 53 :DY 6pfkA 56 :DV T0333 65 :KDN 6pfkA 58 :GDI T0333 69 :RFAETVATRPAIDL 6pfkA 63 :RGGTILYTARCPEF T0333 85 :WGVQ 6pfkA 79 :EEGQ T0333 98 :DGTMALVDDYRP 6pfkA 83 :KKGIEQLKKHGI T0333 110 :DLVVYE 6pfkA 96 :GLVVIG T0333 118 :ATVGLLAADRA 6pfkA 102 :GDGSYQGAKKL T0333 129 :GVPAVQRNQSA 6pfkA 116 :GFPCVGVPGTI T0333 140 :W 6pfkA 133 :T T0333 143 :RGMHRSIASFLTDL 6pfkA 136 :TIGFDTALNTVIDA T0333 168 :VATIESFPPSLL 6pfkA 150 :IDKIRDTATSHE T0333 191 :W 6pfkA 162 :R T0333 194 :YGGGA 6pfkA 165 :VIEVM T0333 204 :LPPVP 6pfkA 170 :GRHAG T0333 209 :ARPEVA 6pfkA 185 :GAETIL T0333 223 :QAFG 6pfkA 194 :ADYD T0333 229 :AVEPIIAAAGEV 6pfkA 200 :DVIARLKRGHER T0333 241 :DADFVLALGDLDI 6pfkA 214 :KHSIIIVAEGVGS T0333 256 :LGTLP 6pfkA 251 :QRGGS T0333 271 :LHTLLR 6pfkA 264 :ASRLGA T0333 313 :TAREAVSRRGIGLVSTS 6pfkA 270 :RAVELLLEGKGGRCVGI T0333 337 :LRRLIG 6pfkA 296 :IAEALA T0333 343 :DESLRTAAREV 6pfkA 308 :DQRMYALSKEL Number of specific fragments extracted= 29 number of extra gaps= 10 total=1394 Number of alignments=68 # 6pfkA read from 6pfkA/merged-good-all-a2m # found chain 6pfkA in template set Warning: unaligning (T0333)T24 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)H30 Warning: unaligning (T0333)A25 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)H30 Warning: unaligning (T0333)G44 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)I49 Warning: unaligning (T0333)L45 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)I49 Warning: unaligning (T0333)A71 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)T78 Warning: unaligning (T0333)E72 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)T78 Warning: unaligning (T0333)L179 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)F135 Warning: unaligning (T0333)L180 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)F135 Warning: unaligning (T0333)A242 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)Y164 Warning: unaligning (T0333)D243 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)Y164 Warning: unaligning (T0333)P304 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)E193 Warning: unaligning (T0333)P306 because of BadResidue code BAD_PEPTIDE in next template residue (6pfkA)N199 Warning: unaligning (T0333)R307 because of BadResidue code BAD_PEPTIDE at template residue (6pfkA)N199 T0333 1 :MLFVSSPGIGHL 6pfkA 4 :IGVLTSGGDSPG T0333 13 :F 6pfkA 17 :N T0333 14 :PLIQLAWGFR 6pfkA 19 :AIRSVVRKAI T0333 26 :GHDVLIAVA 6pfkA 31 :GVEVYGVYH T0333 36 :HADRAAAA 6pfkA 40 :GYAGLIAG T0333 46 :E 6pfkA 50 :K T0333 49 :DV 6pfkA 51 :KL T0333 53 :DYSAVKVF 6pfkA 53 :EVGDVGDI T0333 61 :EQVAKDNPRF 6pfkA 67 :ILYTARCPEF T0333 94 :RPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 6pfkA 79 :EEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLT T0333 129 :GVPAVQRNQSAWRT 6pfkA 116 :GFPCVGVPGTIDND T0333 175 :PPSL 6pfkA 130 :IPGT T0333 181 :E 6pfkA 136 :T T0333 220 :IE 6pfkA 137 :IG T0333 226 :GIGAVEPIIAAAGEV 6pfkA 139 :FDTALNTVIDAIDKI T0333 241 :D 6pfkA 161 :E T0333 244 :FVLALGD 6pfkA 165 :VIEVMGR T0333 284 :HGGGGTVMTAIDAGIPQLLA 6pfkA 172 :HAGDIALWSGLAGGAETILI T0333 305 :D 6pfkA 197 :D T0333 308 :DQFQHTAREAVSRRGIGL 6pfkA 200 :DVIARLKRGHERGKKHSI T0333 327 :STSDKVDADLLRRLIG 6pfkA 224 :VGSGVDFGRQIQEATG T0333 343 :DESLRTAAREVREE 6pfkA 257 :TAFDRVLASRLGAR T0333 366 :TVRRIVE 6pfkA 271 :AVELLLE Number of specific fragments extracted= 23 number of extra gaps= 7 total=1417 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rq2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rq2A expands to /projects/compbio/data/pdb/1rq2.pdb.gz 1rq2A:Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 733, because occupancy 0.330 <= existing 0.330 in 1rq2A Skipped atom 734, because occupancy 0.330 <= existing 0.330 in 1rq2A Skipped atom 906, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 908, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 910, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 912, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 914, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 916, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1237, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1538, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1540, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1542, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1784, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1844, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1846, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 1848, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2041, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2043, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2045, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2135, because occupancy 0.500 <= existing 0.500 in 1rq2A Skipped atom 2137, because occupancy 0.500 <= existing 0.500 in 1rq2A # T0333 read from 1rq2A/merged-good-all-a2m # 1rq2A read from 1rq2A/merged-good-all-a2m # adding 1rq2A to template set # found chain 1rq2A in template set Warning: unaligning (T0333)A64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rq2A)G69 Warning: unaligning (T0333)F70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rq2A)G69 T0333 2 :LFVS 1rq2A 13 :VVGI T0333 12 :LFPLIQLAWGFRTAG 1rq2A 17 :GGGGVNAVNRMIEQG T0333 27 :HDVLIAVAE 1rq2A 35 :VEFIAINTD T0333 37 :ADRAAAAGLEVVD 1rq2A 44 :AQALLMSDADVKL T0333 50 :VAPD 1rq2A 58 :VGRD T0333 63 :V 1rq2A 62 :S T0333 71 :A 1rq2A 70 :A T0333 81 :DLE 1rq2A 71 :DPE T0333 88 :QIAAVNRPLVDGTMALVDDYRPDLVVYEQGA 1rq2A 74 :VGRKAAEDAKDEIEELLRGADMVFVTAGEGG T0333 119 :TVGLLAADRA 1rq2A 109 :GGAPVVASIA T0333 129 :GVPAVQRNQSAW 1rq2A 122 :GALTVGVVTRPF T0333 141 :RTRGMHRSIASFLTDLMDK 1rq2A 171 :DAAVSLMDAFRSADEVLLN T0333 160 :HQVSL 1rq2A 198 :ITTPG T0333 171 :IES 1rq2A 203 :LIN T0333 175 :PPS 1rq2A 206 :VDF T0333 180 :LEAEPEG 1rq2A 213 :GIMSGAG T0333 187 :WFMRWVPYGGGAV 1rq2A 221 :ALMGIGSARGEGR T0333 200 :LGDRLPP 1rq2A 247 :LEASMEG T0333 209 :ARPEVAITMGT 1rq2A 254 :AQGVLMSIAGG T0333 223 :QAFGIGAVEPIIAAAGEV 1rq2A 265 :SDLGLFEINEAASLVQDA T0333 241 :DADFVLAL 1rq2A 286 :DANIIFGT T0333 249 :G 1rq2A 296 :D T0333 254 :SPLG 1rq2A 297 :DSLG T0333 261 :RNVRA 1rq2A 301 :DEVRV Number of specific fragments extracted= 24 number of extra gaps= 0 total=1441 Number of alignments=70 # 1rq2A read from 1rq2A/merged-good-all-a2m # found chain 1rq2A in template set Warning: unaligning (T0333)T73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rq2A)G69 Warning: unaligning (T0333)A79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rq2A)G69 T0333 12 :LFPLIQLAWGFRTAG 1rq2A 17 :GGGGVNAVNRMIEQG T0333 27 :HDVLIAVAE 1rq2A 35 :VEFIAINTD T0333 37 :ADRAAAAGLEVVDVAPDY 1rq2A 44 :AQALLMSDADVKLDVGRD T0333 72 :E 1rq2A 62 :S T0333 80 :IDLEEWGVQIAAVNR 1rq2A 70 :ADPEVGRKAAEDAKD T0333 99 :GTMALVDD 1rq2A 85 :EIEELLRG T0333 109 :PDLVVY 1rq2A 93 :ADMVFV T0333 115 :E 1rq2A 101 :G T0333 118 :A 1rq2A 104 :G T0333 119 :TVGLL 1rq2A 109 :GGAPV T0333 124 :AADRAGVPAVQRNQSA 1rq2A 117 :IARKLGALTVGVVTRP T0333 140 :WRTRGMHRSIASFLTDLMDKHQVS 1rq2A 138 :KRRSNQAENGIAALRESCDTLIVI T0333 168 :VATIESFPP 1rq2A 163 :NDRLLQMGD T0333 205 :PPVP 1rq2A 172 :AAVS T0333 209 :ARPEVAITMGTIE 1rq2A 253 :GAQGVLMSIAGGS T0333 224 :AFGIGAVEPIIAAAGEV 1rq2A 266 :DLGLFEINEAASLVQDA T0333 241 :DADFVLAL 1rq2A 286 :DANIIFGT T0333 254 :SPLG 1rq2A 297 :DSLG T0333 261 :RNVRA 1rq2A 301 :DEVRV Number of specific fragments extracted= 19 number of extra gaps= 0 total=1460 Number of alignments=71 # 1rq2A read from 1rq2A/merged-good-all-a2m # found chain 1rq2A in template set Warning: unaligning (T0333)P68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rq2A)G69 Warning: unaligning (T0333)V74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rq2A)G69 T0333 1 :MLFVSS 1rq2A 11 :IKVVGI T0333 12 :LFPLIQLAWGFRTAGHD 1rq2A 17 :GGGGVNAVNRMIEQGLK T0333 44 :GLEVVDVAPDYSAVKVF 1rq2A 34 :GVEFIAINTDAQALLMS T0333 66 :DN 1rq2A 61 :DS T0333 75 :AT 1rq2A 70 :AD T0333 86 :GVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT 1rq2A 72 :PEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGG T0333 120 :VGLLAADRA 1rq2A 110 :GAPVVASIA T0333 129 :GVPAVQRNQSAWRTRGMHRSIA 1rq2A 122 :GALTVGVVTRPFSFEGKRRSNQ T0333 155 :DLMDKHQVSLPEPVATIESF 1rq2A 205 :NVDFADVKGIMSGAGTALMG T0333 191 :WVPYGGGA 1rq2A 225 :IGSARGEG T0333 199 :VLGDRLPPVPARPEVAITMGTIEL 1rq2A 243 :NSPLLEASMEGAQGVLMSIAGGSD T0333 225 :FGIGAVEPIIAAAGEV 1rq2A 267 :LGLFEINEAASLVQDA T0333 241 :DADFVLALGDL 1rq2A 286 :DANIIFGTVID T0333 254 :SPLGT 1rq2A 297 :DSLGD Number of specific fragments extracted= 14 number of extra gaps= 0 total=1474 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f0kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f0kA expands to /projects/compbio/data/pdb/1f0k.pdb.gz 1f0kA:# T0333 read from 1f0kA/merged-good-all-a2m # 1f0kA read from 1f0kA/merged-good-all-a2m # adding 1f0kA to template set # found chain 1f0kA in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1f0kA 10 :MVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG T0333 34 :AEHADRAAAAGLEVVDVA 1f0kA 45 :RMEADLVPKHGIEIDFIR T0333 61 :EQVAKDN 1f0kA 63 :ISGLRGK T0333 81 :DLEEWGVQI 1f0kA 70 :GIKALIAAP T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYE 1f0kA 79 :LRIFNAWRQARAIMKAYKPDVVLGM T0333 116 :QGATVGLLAADRAGVPAVQRNQS 1f0kA 106 :YVSGPGGLAAWSLGIPVVLHEQN T0333 144 :GMHRSIASFLT 1f0kA 129 :GIAGLTNKWLA T0333 165 :PEPVATIESF 1f0kA 140 :KIATKVMQAF T0333 185 :EGWFMR 1f0kA 150 :PGAFPN T0333 192 :VPYGGGAV 1f0kA 156 :AEVVGNPV T0333 200 :LGDRLPPVPARPEVAITMGT 1f0kA 173 :PQQRLAGREGPVRVLVVGGS T0333 224 :AFGIGAVEPIIAAAGEVD 1f0kA 193 :QGARILNQTMPQVAAKLG T0333 242 :ADFVLALGDLDISPLGT 1f0kA 213 :VTIWHQSGKGSQQSVEQ T0333 259 :LPRNVRAVGWT 1f0kA 235 :GQPQHKVTEFI T0333 270 :PLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPR 1f0kA 247 :DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQH T0333 308 :DQFQHTAR 1f0kA 288 :QQYWNALP T0333 318 :VSRRGIGLVSTSDKVDADLLRRLI 1f0kA 296 :LEKAGAAKIIEQPQLSVDAVANTL T0333 347 :RTAAREVREEMVALPT 1f0kA 324 :RETLLTMAERARAASI T0333 363 :PAETVRRIVERI 1f0kA 342 :ATERVANEVSRV Number of specific fragments extracted= 19 number of extra gaps= 0 total=1493 Number of alignments=73 # 1f0kA read from 1f0kA/merged-good-all-a2m # found chain 1f0kA in template set T0333 3 :FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHA 1f0kA 11 :VMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR T0333 38 :DRAAAAGLEVVDVA 1f0kA 49 :DLVPKHGIEIDFIR T0333 74 :VATRPAIDLEEWGVQIAAVNRPLV 1f0kA 63 :ISGLRGKGIKALIAAPLRIFNAWR T0333 99 :GTMALVDDYRPDLVVY 1f0kA 87 :QARAIMKAYKPDVVLG T0333 115 :EQGATVGLLAADRAGVPAVQR 1f0kA 105 :GYVSGPGGLAAWSLGIPVVLH T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEP 1f0kA 126 :EQNGIAGLTNKWLAKIATKVMQAFPGA T0333 175 :PP 1f0kA 153 :FP T0333 191 :WVPYGGGAVLGDRLPPVP 1f0kA 155 :NAEVVGNPVRTDVLALPL T0333 209 :ARPEVAITMGTIELQAFGIGAVEPIIAAAGE 1f0kA 181 :EGPVRVLVVGGSQGARILNQTMPQVAAKLGD T0333 241 :DADFVLALGDLDISPLGTLP 1f0kA 212 :SVTIWHQSGKGSQQSVEQAY T0333 261 :RNVRAVGWT 1f0kA 237 :PQHKVTEFI T0333 270 :PLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPR 1f0kA 247 :DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQH T0333 308 :DQF 1f0kA 288 :QQY T0333 313 :TAREAVSRRGIGLVST 1f0kA 291 :WNALPLEKAGAAKIIE T0333 330 :DKVD 1f0kA 307 :QPQL T0333 334 :ADLLRRLIG 1f0kA 312 :VDAVANTLA T0333 343 :D 1f0kA 323 :S T0333 347 :RTAAREVREEMVAL 1f0kA 324 :RETLLTMAERARAA T0333 361 :P 1f0kA 340 :P T0333 362 :TPAETVRRIVERIS 1f0kA 342 :ATERVANEVSRVAR Number of specific fragments extracted= 20 number of extra gaps= 0 total=1513 Number of alignments=74 # 1f0kA read from 1f0kA/merged-good-all-a2m # found chain 1f0kA in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1f0kA 9 :LMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG T0333 34 :AEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNP 1f0kA 45 :RMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPL T0333 92 :VNRPLVDGTMALVDDYRPDLVVYEQGATVGL 1f0kA 80 :RIFNAWRQARAIMKAYKPDVVLGMGGYVSGP T0333 123 :LAADRAGVPAVQRNQSAWRTRGM 1f0kA 113 :LAAWSLGIPVVLHEQNGIAGLTN T0333 162 :VSLPEPVATIESFPPSLL 1f0kA 136 :KWLAKIATKVMQAFPGAF T0333 186 :GWFMRWVPYGGGA 1f0kA 154 :PNAEVVGNPVRTD T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1f0kA 172 :LPQQRLAGREGPVRVLVVGGSQG T0333 226 :GIGAVEPIIAAAGEVD 1f0kA 195 :ARILNQTMPQVAAKLG T0333 242 :ADFVLALGDLDISPL 1f0kA 213 :VTIWHQSGKGSQQSV T0333 257 :GT 1f0kA 234 :AG T0333 260 :PRNVRAVGWT 1f0kA 236 :QPQHKVTEFI T0333 270 :PLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAP 1f0kA 247 :DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVP T0333 305 :DPRD 1f0kA 283 :QHKD T0333 309 :QFQHTAREAVSRRGIGLV 1f0kA 289 :QYWNALPLEKAGAAKIIE T0333 327 :STSDKVDADLLRR 1f0kA 309 :QLSVDAVANTLAG T0333 341 :IGDESLRTAAREVREEMV 1f0kA 322 :WSRETLLTMAERARAASI T0333 360 :LPTPAETVRRIVERIS 1f0kA 340 :PDATERVANEVSRVAR Number of specific fragments extracted= 17 number of extra gaps= 0 total=1530 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xuuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xuuA expands to /projects/compbio/data/pdb/1xuu.pdb.gz 1xuuA:# T0333 read from 1xuuA/merged-good-all-a2m # 1xuuA read from 1xuuA/merged-good-all-a2m # adding 1xuuA to template set # found chain 1xuuA in template set T0333 2 :LFVSSPGI 1xuuA 22 :IICEIGIN T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHADRA 1xuuA 32 :GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDE T0333 67 :NPRFAETVATRPAIDLEEWGVQI 1xuuA 64 :SDEAKQVIPGNADVSIYEIMERC T0333 94 :RPLVDGTMALVDDYRPDLVVYE 1xuuA 90 :EEDEIKLKEYVESKGMIFISTP T0333 117 :GATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIAS 1xuuA 112 :FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVAS T0333 209 :ARPEVAITMGT 1xuuA 147 :FGKPIILSTGM T0333 226 :GIGAVEPIIAAAGEVDADFV 1xuuA 159 :SIESIKKSVEIIREAGVPYA T0333 246 :LALG 1xuuA 180 :LHCT T0333 250 :DLDISPLG 1xuuA 187 :PTPYEDVR T0333 271 :LHTLLRT 1xuuA 198 :MNDLSEA T0333 278 :CTAVVHHG 1xuuA 208 :AIIGLSDH T0333 287 :GGTVMTAIDAGIPQLLAPDP 1xuuA 219 :NYACLGAVALGGSILERHFT T0333 308 :DQFQHTAR 1xuuA 246 :PDIVCSMN T0333 334 :ADLLRRL 1xuuA 254 :PDTFKEL T0333 347 :RTAAREVREEMV 1xuuA 261 :KQGAHALKLARG Number of specific fragments extracted= 15 number of extra gaps= 0 total=1545 Number of alignments=76 # 1xuuA read from 1xuuA/merged-good-all-a2m # found chain 1xuuA in template set T0333 2 :LFV 1xuuA 22 :IIC T0333 5 :SSPGI 1xuuA 26 :IGINH T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHADRA 1xuuA 32 :GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDE T0333 67 :NP 1xuuA 63 :MS T0333 69 :RFAETVATRPAIDLEEWGVQ 1xuuA 67 :AKQVIPGNADVSIYEIMERC T0333 89 :IA 1xuuA 93 :EI T0333 99 :GTMALVDDYRPDLVVYE 1xuuA 95 :KLKEYVESKGMIFISTP T0333 117 :GATVGLLAADRAGVPAVQRN 1xuuA 112 :FSRAAALRLQRMDIPAYKIG T0333 141 :RTRGMHRSIASFLTDL 1xuuA 132 :SGECNNYPLIKLVASF T0333 210 :RPEVAITMGTIE 1xuuA 148 :GKPIILSTGMNS T0333 223 :Q 1xuuA 160 :I T0333 228 :GAVEPIIAAAGEVDADFVLALG 1xuuA 161 :ESIKKSVEIIREAGVPYALLHC T0333 250 :DLDISPLG 1xuuA 187 :PTPYEDVR T0333 269 :TP 1xuuA 195 :LG T0333 271 :LHTLLR 1xuuA 198 :MNDLSE T0333 277 :TCTAVVHHG 1xuuA 207 :DAIIGLSDH T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 1xuuA 218 :DNYACLGAVALGGSILERHFTD T0333 308 :DQF 1xuuA 250 :CSM T0333 314 :AREAVSR 1xuuA 253 :NPDTFKE T0333 346 :LRTAAREVREEMV 1xuuA 260 :LKQGAHALKLARG Number of specific fragments extracted= 20 number of extra gaps= 0 total=1565 Number of alignments=77 # 1xuuA read from 1xuuA/merged-good-all-a2m # found chain 1xuuA in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRA 1xuuA 23 :ICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDE T0333 55 :SAVKVFEQ 1xuuA 63 :MSDEAKQV T0333 70 :FAETVATRPAIDLEEW 1xuuA 71 :IPGNADVSIYEIMERC T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYE 1xuuA 87 :ALNEEDEIKLKEYVESKGMIFISTP T0333 117 :GATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFL 1xuuA 112 :FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFG T0333 211 :PEVAITMGTI 1xuuA 149 :KPIILSTGMN T0333 226 :GIGAVEPIIAAAGEVDADFVLALGD 1xuuA 159 :SIESIKKSVEIIREAGVPYALLHCT T0333 251 :LDISPL 1xuuA 188 :TPYEDV T0333 271 :LHTLLRTCTAVVHH 1xuuA 201 :LSEAFPDAIIGLSD T0333 287 :GGTVMTAIDAGIPQLLAP 1xuuA 219 :NYACLGAVALGGSILERH T0333 306 :PRD 1xuuA 240 :RMD T0333 323 :IGLV 1xuuA 243 :RPGP T0333 327 :STSDKVDAD 1xuuA 251 :SMNPDTFKE T0333 346 :LRTAAREVREE 1xuuA 260 :LKQGAHALKLA Number of specific fragments extracted= 14 number of extra gaps= 0 total=1579 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1udc/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1udc expands to /projects/compbio/data/pdb/1udc.pdb.gz 1udc:Warning: there is no chain 1udc will retry with 1udcA # T0333 read from 1udc/merged-good-all-a2m # 1udc read from 1udc/merged-good-all-a2m # adding 1udc to template set # found chain 1udc in template set T0333 1 :M 1udc 1 :M T0333 2 :LFVSSPGI 1udc 3 :VLVTGGSG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1udc 11 :YIGSHTCVQLLQNGHDVIILD T0333 34 :AEH 1udc 33 :LCN T0333 37 :ADRAAAA 1udc 41 :LPVIERL T0333 44 :GLEVVDVAPD 1udc 51 :HPTFVEGDIR T0333 81 :DL 1udc 61 :NE T0333 98 :DGTMALVDDYRPDLVVYEQGAT 1udc 63 :ALMTEILHDHAIDTVIHFAGLK T0333 120 :VGLLAADRAGVPAVQRNQSAW 1udc 106 :RLISAMRAANVKNFIFSSSAT T0333 141 :RTRGMHRSIASFLTDLMDK 1udc 193 :PQGIPNNLMPYIAQVAVGR T0333 167 :PVATIESF 1udc 212 :RDSLAIFG T0333 181 :EAEPEGWFMRWVPYGGGAV 1udc 220 :NDYPTEDGTGVRDYIHVMD T0333 201 :GDRLPPV 1udc 247 :MEKLANK T0333 209 :ARPEVAITMGTIELQ 1udc 254 :PGVHIYNLGAGVGNS T0333 226 :GIGAVEPIIAAAGEV 1udc 269 :VLDVVNAFSKACGKP T0333 241 :DADFV 1udc 285 :NYHFA T0333 250 :DL 1udc 290 :PR T0333 253 :ISPL 1udc 292 :REGD Number of specific fragments extracted= 18 number of extra gaps= 0 total=1597 Number of alignments=79 # 1udc read from 1udc/merged-good-all-a2m # found chain 1udc in template set T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 1udc 7 :GGSGYIGSHTCVQLLQNGHDVIILD T0333 34 :AE 1udc 33 :LC T0333 37 :A 1udc 35 :N T0333 38 :DRAAA 1udc 42 :PVIER T0333 43 :AGLEVVD 1udc 50 :KHPTFVE T0333 52 :PDYSAVK 1udc 57 :GDIRNEA T0333 99 :GTMALVDDYRPDLVVY 1udc 64 :LMTEILHDHAIDTVIH T0333 115 :E 1udc 82 :G T0333 116 :QGATVGLLAADRAGVPAVQRNQSA 1udc 102 :NGTLRLISAMRAANVKNFIFSSSA T0333 140 :WRTRGMHRSIASFLTDLM 1udc 147 :SPYGKSKLMVEQILTDLQ T0333 191 :WVPYGGGAVLGDRLPPVP 1udc 177 :YFNPVGAHPSGDMGEDPQ T0333 209 :ARPEVAITMGTIE 1udc 253 :KPGVHIYNLGAGV T0333 223 :Q 1udc 266 :G T0333 225 :FGIGAVEPIIAAAGEV 1udc 267 :NSVLDVVNAFSKACGK T0333 241 :DADFV 1udc 285 :NYHFA T0333 250 :DLDISPLGTL 1udc 290 :PRREGDLPAY T0333 268 :WTPLHTLLR 1udc 300 :WADASKADR Number of specific fragments extracted= 17 number of extra gaps= 0 total=1614 Number of alignments=80 # 1udc read from 1udc/merged-good-all-a2m # found chain 1udc in template set T0333 1 :MLFV 1udc 3 :VLVT T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 1udc 7 :GGSGYIGSHTCVQLLQNGHDVIILD T0333 35 :EHADRAAAA 1udc 39 :SVLPVIERL T0333 44 :GLEVVDVAPDYSAV 1udc 49 :GKHPTFVEGDIRNE T0333 98 :DGTMALVDDYRPDLVVYEQG 1udc 63 :ALMTEILHDHAIDTVIHFAG T0333 118 :ATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1udc 104 :TLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF T0333 183 :EPEGWFMRWVPYGGGA 1udc 209 :VGRRDSLAIFGNDYPT T0333 200 :LGDRLPPVPARPEVAIT 1udc 243 :HVVAMEKLANKPGVHIY T0333 217 :MGTIE 1udc 261 :LGAGV T0333 222 :LQ 1udc 267 :NS T0333 226 :GIGAVEPIIAAAGE 1udc 269 :VLDVVNAFSKACGK Number of specific fragments extracted= 11 number of extra gaps= 0 total=1625 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 4pfk/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 4pfk expands to /projects/compbio/data/pdb/4pfk.pdb.gz 4pfk:Warning: there is no chain 4pfk will retry with 4pfkA # T0333 read from 4pfk/merged-good-all-a2m # 4pfk read from 4pfk/merged-good-all-a2m # adding 4pfk to template set # found chain 4pfk in template set Warning: unaligning (T0333)D81 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)T78 Warning: unaligning (T0333)L82 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)T78 Warning: unaligning (T0333)Q134 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)V122 Warning: unaligning (T0333)R135 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)V122 Warning: unaligning (T0333)V192 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)F135 Warning: unaligning (T0333)P193 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)F135 T0333 1 :M 4pfk 1 :M T0333 2 :LFVSSPGIGHLFPLI 4pfk 6 :VLTSGGDSPGMNAAI T0333 17 :QLAWGFRTAGHDVLIAV 4pfk 22 :SVVRKAIYHGVEVYGVY T0333 35 :EHADRAAAA 4pfk 39 :HGYAGLIAG T0333 55 :SAVKVFEQVAKDNPRFAE 4pfk 48 :NIKKLEVGDVGDIIHRGG T0333 73 :TVATRPAI 4pfk 69 :YTARCPEF T0333 83 :EEWG 4pfk 79 :EEGQ T0333 98 :DGTMALVDDYRP 4pfk 83 :KKGIEQLKKHGI T0333 110 :DLVVYE 4pfk 96 :GLVVIG T0333 118 :ATVGLLAADRA 4pfk 102 :GDGSYQGAKKL T0333 129 :GVPAV 4pfk 116 :GFPCV T0333 136 :NQS 4pfk 123 :PGT T0333 184 :PEGWFMRW 4pfk 126 :IDNDIPGT T0333 194 :YGGG 4pfk 136 :TIGF T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDL 4pfk 140 :DTALNTVIDAIDKIRDTATSHERTYVIEVMGR T0333 284 :HGGGGTVMTAIDAGIPQLLA 4pfk 172 :HAGDIALWSGLAGGAETILI T0333 304 :PDPRDQFQHTAR 4pfk 196 :YDMNDVIARLKR T0333 318 :VSRRGIG 4pfk 208 :GHERGKK T0333 325 :LV 4pfk 216 :SI T0333 327 :STSDKV 4pfk 225 :GSGVDF T0333 334 :ADLLRRLI 4pfk 231 :GRQIQEAT T0333 343 :DESLRTAAREVREE 4pfk 257 :TAFDRVLASRLGAR T0333 357 :MVALPT 4pfk 299 :ALANKH T0333 363 :PAETVRRIVER 4pfk 308 :DQRMYALSKEL Number of specific fragments extracted= 24 number of extra gaps= 3 total=1649 Number of alignments=82 # 4pfk read from 4pfk/merged-good-all-a2m # found chain 4pfk in template set Warning: unaligning (T0333)D81 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)T78 Warning: unaligning (T0333)L82 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)T78 Warning: unaligning (T0333)Q134 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)V122 Warning: unaligning (T0333)R135 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)V122 T0333 1 :M 4pfk 1 :M T0333 2 :LFVSSPGI 4pfk 6 :VLTSGGDS T0333 10 :GHLFPLIQLAWGFRTAGHDVLIA 4pfk 15 :GMNAAIRSVVRKAIYHGVEVYGV T0333 34 :AEHADRAAAAGLEVVDVA 4pfk 38 :YHGYAGLIAGNIKKLEVG T0333 53 :DY 4pfk 56 :DV T0333 65 :KDNPRFAE 4pfk 58 :GDIIHRGG T0333 73 :TVATRPAI 4pfk 69 :YTARCPEF T0333 83 :EEWGV 4pfk 79 :EEGQK T0333 99 :GTMALVDDYRP 4pfk 84 :KGIEQLKKHGI T0333 110 :DLVVYE 4pfk 96 :GLVVIG T0333 117 :GATVGLLA 4pfk 102 :GDGSYQGA T0333 126 :DRA 4pfk 110 :KKL T0333 129 :GVPAV 4pfk 116 :GFPCV T0333 136 :NQSA 4pfk 123 :PGTI T0333 140 :WRTRGMHRSIASFL 4pfk 144 :NTVIDAIDKIRDTA T0333 158 :DKHQVSLPEPVATIE 4pfk 164 :YVIEVMGRHAGDIAL T0333 173 :SF 4pfk 185 :GA T0333 191 :WVPYGG 4pfk 187 :ETILIP T0333 221 :E 4pfk 193 :E T0333 223 :QAFGIGAVEPIIAAAGEV 4pfk 194 :ADYDMNDVIARLKRGHER T0333 241 :DADFVLALGDLDI 4pfk 214 :KHSIIIVAEGVGS T0333 254 :SPLG 4pfk 238 :TGFE T0333 261 :RNVRAVGWT 4pfk 242 :TRVTVLGHV T0333 270 :P 4pfk 253 :G T0333 271 :LHTLLR 4pfk 264 :ASRLGA T0333 313 :TAREAVSRRGIGLVSTS 4pfk 270 :RAVELLLEGKGGRCVGI T0333 330 :DK 4pfk 288 :NN T0333 337 :LRRLIG 4pfk 296 :IAEALA T0333 343 :DESLRTAAREV 4pfk 308 :DQRMYALSKEL Number of specific fragments extracted= 29 number of extra gaps= 2 total=1678 Number of alignments=83 # 4pfk read from 4pfk/merged-good-all-a2m # found chain 4pfk in template set Warning: unaligning (T0333)R77 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)T78 Warning: unaligning (T0333)P78 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)T78 Warning: unaligning (T0333)Q134 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)V122 Warning: unaligning (T0333)R135 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)V122 Warning: unaligning (T0333)R147 because of BadResidue code BAD_PEPTIDE in next template residue (4pfk)F135 Warning: unaligning (T0333)S148 because of BadResidue code BAD_PEPTIDE at template residue (4pfk)F135 T0333 1 :MLFVSSPGIGHLF 4pfk 4 :IGVLTSGGDSPGM T0333 14 :PLIQLAWGFRTAGHDVLIAVAEHADRAAA 4pfk 19 :AIRSVVRKAIYHGVEVYGVYHGYAGLIAG T0333 44 :GLE 4pfk 48 :NIK T0333 53 :DYSAVKVFEQVAKDNPRFAETVAT 4pfk 53 :EVGDVGDIIHRGGTILYTARCPEF T0333 94 :RPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRA 4pfk 79 :EEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLT T0333 129 :GVPAV 4pfk 116 :GFPCV T0333 136 :NQSAWRTRGMH 4pfk 123 :PGTIDNDIPGT T0333 149 :IASF 4pfk 136 :TIGF T0333 222 :LQAFGIGAVEPIIAAAGEVDADFVLALGDL 4pfk 142 :ALNTVIDAIDKIRDTATSHERTYVIEVMGR T0333 284 :HGGGGTVMTAIDAGIPQLLAP 4pfk 172 :HAGDIALWSGLAGGAETILIP T0333 305 :DPRDQFQHTAREAVSRRGIGL 4pfk 197 :DMNDVIARLKRGHERGKKHSI T0333 327 :STSDKVDADLLRRLIG 4pfk 224 :VGSGVDFGRQIQEATG T0333 343 :DESLRTAAREVREE 4pfk 257 :TAFDRVLASRLGAR T0333 366 :TVRRIVE 4pfk 271 :AVELLLE Number of specific fragments extracted= 14 number of extra gaps= 3 total=1692 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zxxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zxxA expands to /projects/compbio/data/pdb/1zxx.pdb.gz 1zxxA:# T0333 read from 1zxxA/merged-good-all-a2m # 1zxxA read from 1zxxA/merged-good-all-a2m # adding 1zxxA to template set # found chain 1zxxA in template set T0333 1 :M 1zxxA 1 :M T0333 2 :LFVSSPGIGHLFPLI 1zxxA 6 :ILTSGGDAPGMNAAV T0333 17 :QLAWGFRTAGHDVLIAV 1zxxA 22 :AVTRVAIANGLEVFGIR T0333 35 :EHADRAAAA 1zxxA 39 :YGFAGLVAG T0333 55 :SAVKVFEQVAKDNPRFAETVATRP 1zxxA 48 :DIFPLESEDVAHLINVSGTFLYSA T0333 81 :DLEEWGV 1zxxA 72 :RYPEFAE T0333 94 :RPLVDGTMALVDDYRPDLVV 1zxxA 79 :EEGQLAGIEQLKKHGIDAVV T0333 114 :YE 1zxxA 100 :IG T0333 117 :GATVGLLAADR 1zxxA 102 :GDGSYHGALQL T0333 129 :GVPAVQRNQS 1zxxA 116 :GFNSIGLPGT T0333 157 :MDKH 1zxxA 126 :IDND T0333 192 :VP 1zxxA 130 :IP T0333 203 :RLPP 1zxxA 132 :YTDA T0333 216 :TMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1zxxA 136 :TIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRN T0333 285 :GGGGTVMTAIDAGIPQLLA 1zxxA 173 :CGDIAMRVGVACGADAIVI T0333 304 :PDPRDQFQHTAR 1zxxA 196 :YDVEEIANRLKQ T0333 318 :VSRRGIG 1zxxA 208 :AQESGKD T0333 325 :LV 1zxxA 216 :GL T0333 327 :STSDKV 1zxxA 225 :MTADQF T0333 334 :ADLLRR 1zxxA 231 :MAELKK T0333 343 :DESLRTAAREVREE 1zxxA 257 :TVSDRVLASKLGSE T0333 357 :MVALP 1zxxA 275 :LLEGK Number of specific fragments extracted= 22 number of extra gaps= 0 total=1714 Number of alignments=85 # 1zxxA read from 1zxxA/merged-good-all-a2m # found chain 1zxxA in template set T0333 1 :M 1zxxA 1 :M T0333 2 :LFVSSPGI 1zxxA 6 :ILTSGGDA T0333 10 :GHLFPLIQLAWGFRTAGHDVLIA 1zxxA 15 :GMNAAVRAVTRVAIANGLEVFGI T0333 34 :AEHADRAAAAGLEVV 1zxxA 38 :RYGFAGLVAGDIFPL T0333 52 :PDYSA 1zxxA 53 :ESEDV T0333 65 :KDNPRFAE 1zxxA 58 :AHLINVSG T0333 73 :TVATRPAIDLEEWGVQI 1zxxA 67 :FLYSARYPEFAEEEGQL T0333 99 :GTMALVDDYRPDLVVY 1zxxA 84 :AGIEQLKKHGIDAVVV T0333 115 :E 1zxxA 101 :G T0333 117 :GA 1zxxA 102 :GD T0333 119 :TVGLLAADRAGVPAVQRNQSA 1zxxA 106 :YHGALQLTRHGFNSIGLPGTI T0333 162 :VSLPEPVATIE 1zxxA 168 :VMGRNCGDIAM T0333 173 :SF 1zxxA 185 :GA T0333 191 :WVPYGG 1zxxA 187 :DAIVIP T0333 202 :D 1zxxA 193 :E T0333 223 :QAFGIGAVEPIIAAAGEV 1zxxA 194 :RPYDVEEIANRLKQAQES T0333 241 :DADFVLALGDLDI 1zxxA 214 :DHGLVVVAEGVMT T0333 254 :SPLGTLP 1zxxA 249 :HMQRGGT T0333 308 :DQFQHTAREAVSRRGIGLVSTS 1zxxA 265 :SKLGSEAVHLLLEGKGGLAVGI T0333 330 :DK 1zxxA 288 :NG T0333 337 :LRRLIG 1zxxA 296 :ILDLFD T0333 343 :DESLRTAAR 1zxxA 307 :DYDLLKLNA Number of specific fragments extracted= 22 number of extra gaps= 0 total=1736 Number of alignments=86 # 1zxxA read from 1zxxA/merged-good-all-a2m # found chain 1zxxA in template set T0333 1 :MLFVSSPG 1zxxA 4 :IGILTSGG T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 1zxxA 14 :PGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAG T0333 46 :EVVDVAP 1zxxA 48 :DIFPLES T0333 55 :SAVKVFEQVAKDNPRFAETVATRPAID 1zxxA 55 :EDVAHLINVSGTFLYSARYPEFAEEEG T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1zxxA 82 :QLAGIEQLKKHGIDAVVVIGGDGSYHGALQLT T0333 129 :GVPAVQRNQSAWRTRGMHRS 1zxxA 116 :GFNSIGLPGTIDNDIPYTDA T0333 216 :TMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1zxxA 136 :TIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGRN T0333 285 :GGGGTVMTAIDAGIPQLLAPDPR 1zxxA 173 :CGDIAMRVGVACGADAIVIPERP T0333 308 :DQFQHTAREAVSRRGIGL 1zxxA 200 :EIANRLKQAQESGKDHGL T0333 326 :V 1zxxA 222 :E T0333 327 :STSDKVDADLLRR 1zxxA 224 :VMTADQFMAELKK T0333 343 :DESLRTAAREVREE 1zxxA 257 :TVSDRVLASKLGSE T0333 366 :TVRRIVE 1zxxA 271 :AVHLLLE Number of specific fragments extracted= 13 number of extra gaps= 0 total=1749 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2pfkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2pfkA expands to /projects/compbio/data/pdb/2pfk.pdb.gz 2pfkA:# T0333 read from 2pfkA/merged-good-all-a2m # 2pfkA read from 2pfkA/merged-good-all-a2m # adding 2pfkA to template set # found chain 2pfkA in template set Warning: unaligning (T0333)E61 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (2pfkA)Y55 Warning: unaligning (T0333)Q62 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (2pfkA)Y55 Warning: unaligning (T0333)G129 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)G116 Warning: unaligning (T0333)D243 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)F188 Warning: unaligning (T0333)F244 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)F188 Warning: unaligning (T0333)A296 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)G212 Warning: unaligning (T0333)G297 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)G212 T0333 1 :M 2pfkA 0 :M T0333 2 :LFVSSPGIGHLFPLI 2pfkA 6 :VLTSGGDAPGMNAAI T0333 17 :QLAWGFRTAGHDVLIA 2pfkA 22 :GVVRSALTEGLEVMGI T0333 34 :AEHADRAAAA 2pfkA 38 :YDGYLGLYED T0333 55 :SAVKVF 2pfkA 48 :RMVQLD T0333 63 :VAKDNPRFAETVATRP 2pfkA 56 :SVSDMINRGGTFLGSA T0333 81 :DLEEWGV 2pfkA 72 :RFPEFRD T0333 94 :RPLVDGTMALVDDYRPDLVV 2pfkA 79 :ENIRAVAIENLKKRGIDALV T0333 114 :YE 2pfkA 100 :IG T0333 117 :GAT 2pfkA 102 :GDG T0333 121 :GLLAADRA 2pfkA 105 :SYMGAMRL T0333 130 :VPAVQRNQSAW 2pfkA 117 :FPCIGLPGTID T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLP 2pfkA 134 :DYTIGFFTALSTVVEAIDRLRDTSS T0333 180 :LE 2pfkA 159 :SH T0333 209 :ARPEVAITMGT 2pfkA 161 :QRISVVEVMGR T0333 226 :GIGAVEPIIAAA 2pfkA 173 :CGDLTLAAAIAG T0333 241 :DA 2pfkA 185 :GC T0333 245 :VLA 2pfkA 189 :VVV T0333 249 :GDLD 2pfkA 192 :PEVE T0333 269 :TPLHTLL 2pfkA 196 :FSREDLV T0333 288 :GTVMTAID 2pfkA 203 :NEIKAGIA T0333 298 :I 2pfkA 213 :K T0333 299 :PQLLAPDPR 2pfkA 216 :AIVAITEHM T0333 308 :DQFQHTAR 2pfkA 226 :DVDELAHF T0333 318 :VSR 2pfkA 234 :IEK T0333 321 :RGIG 2pfkA 238 :TGRE T0333 325 :L 2pfkA 243 :R T0333 327 :STSDKV 2pfkA 246 :VLGHIQ T0333 334 :A 2pfkA 252 :R T0333 344 :ESLRTAAREVREE 2pfkA 258 :PYDRILASRMGAY T0333 357 :MVALP 2pfkA 275 :LLAGY Number of specific fragments extracted= 31 number of extra gaps= 4 total=1780 Number of alignments=88 # 2pfkA read from 2pfkA/merged-good-all-a2m # found chain 2pfkA in template set Warning: unaligning (T0333)P52 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (2pfkA)Y55 Warning: unaligning (T0333)D53 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (2pfkA)Y55 Warning: unaligning (T0333)A128 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)G116 Warning: unaligning (T0333)G129 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)G116 Warning: unaligning (T0333)W191 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)F188 Warning: unaligning (T0333)V192 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)F188 Warning: unaligning (T0333)V240 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)G212 T0333 1 :M 2pfkA 0 :M T0333 2 :LFVSSPGI 2pfkA 6 :VLTSGGDA T0333 10 :GHLFPLIQLAWGFRTAGHDVLIA 2pfkA 15 :GMNAAIRGVVRSALTEGLEVMGI T0333 36 :HADRAAAAGLEVVDVA 2pfkA 38 :YDGYLGLYEDRMVQLD T0333 54 :Y 2pfkA 56 :S T0333 65 :KDNPRFAE 2pfkA 58 :SDMINRGG T0333 73 :TVATRPAIDLEEWG 2pfkA 67 :FLGSARFPEFRDEN T0333 96 :LVDGTMALVDDYRPDLVVY 2pfkA 81 :IRAVAIENLKKRGIDALVV T0333 115 :EQGATVGLLAADR 2pfkA 102 :GDGSYMGAMRLTE T0333 130 :VPAVQRNQSA 2pfkA 117 :FPCIGLPGTI T0333 140 :WRTRGMHRSIA 2pfkA 144 :STVVEAIDRLR T0333 158 :DKHQVSLPEPVATIE 2pfkA 164 :SVVEVMGRYCGDLTL T0333 173 :SF 2pfkA 185 :GC T0333 193 :PYGG 2pfkA 189 :VVVP T0333 202 :D 2pfkA 193 :E T0333 223 :QAFGIGAVEPIIAAAGE 2pfkA 194 :VEFSREDLVNEIKAGIA T0333 241 :DADFVLALGDL 2pfkA 214 :KHAIVAITEHM T0333 269 :TPLH 2pfkA 225 :CDVD T0333 313 :TAREAVSR 2pfkA 229 :ELAHFIEK T0333 321 :RGIG 2pfkA 240 :RETR T0333 325 :LVSTS 2pfkA 245 :TVLGH T0333 330 :DKVD 2pfkA 252 :RGGS T0333 334 :A 2pfkA 257 :V T0333 344 :ESLRTAARE 2pfkA 258 :PYDRILASR T0333 366 :TVRRIVERI 2pfkA 267 :MGAYAIDLL Number of specific fragments extracted= 25 number of extra gaps= 4 total=1805 Number of alignments=89 # 2pfkA read from 2pfkA/merged-good-all-a2m # found chain 2pfkA in template set Warning: unaligning (T0333)P52 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (2pfkA)Y55 Warning: unaligning (T0333)S55 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (2pfkA)Y55 Warning: unaligning (T0333)G129 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)G116 Warning: unaligning (T0333)P299 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)F188 Warning: unaligning (T0333)Q300 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)F188 Warning: unaligning (T0333)D343 because of BadResidue code BAD_PEPTIDE in next template residue (2pfkA)G212 Warning: unaligning (T0333)E344 because of BadResidue code BAD_PEPTIDE at template residue (2pfkA)G212 T0333 1 :MLFVSSPG 2pfkA 4 :IGVLTSGG T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 2pfkA 14 :PGMNAAIRGVVRSALTEGLEVMGIY T0333 35 :EHADRAAAA 2pfkA 39 :DGYLGLYED T0333 46 :EVVDVA 2pfkA 48 :RMVQLD T0333 56 :AVKVFEQVAKDNPRFAETVATRPAID 2pfkA 56 :SVSDMINRGGTFLGSARFPEFRDENI T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 2pfkA 82 :RAVAIENLKKRGIDALVVIGGDGSYMGAMRLT T0333 130 :VPAVQRNQSAWRTRGMHRSIAS 2pfkA 117 :FPCIGLPGTIDNDIKGTDYTIG T0333 226 :GIGAVEPIIAAAGEV 2pfkA 139 :FFTALSTVVEAIDRL T0333 241 :DADFVLALGDL 2pfkA 162 :RISVVEVMGRY T0333 285 :GGGGTVMTAIDAGI 2pfkA 173 :CGDLTLAAAIAGGC T0333 301 :LLAP 2pfkA 189 :VVVP T0333 327 :STSDKVDADLLRRLIG 2pfkA 195 :EFSREDLVNEIKAGIA T0333 359 :ALPTPAETVRRIVERIS 2pfkA 223 :HMCDVDELAHFIEKETG Number of specific fragments extracted= 13 number of extra gaps= 4 total=1818 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pn3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333/1pn3A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0333/1pn3A/merged-good-all-a2m.gz for input Trying 1pn3A/merged-good-all-a2m Error: Couldn't open file 1pn3A/merged-good-all-a2m or 1pn3A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b69A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b69A expands to /projects/compbio/data/pdb/2b69.pdb.gz 2b69A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 920, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 924, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 926, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1019, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1267, because occupancy 0.400 <= existing 0.600 in 2b69A Skipped atom 1271, because occupancy 0.400 <= existing 0.600 in 2b69A Skipped atom 1273, because occupancy 0.400 <= existing 0.600 in 2b69A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1428, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1590, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1592, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1954, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1958, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1960, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1962, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1964, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1966, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1968, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1970, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 1995, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2001, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2105, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 2109, because occupancy 0.200 <= existing 0.800 in 2b69A Skipped atom 2111, because occupancy 0.200 <= existing 0.800 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2261, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2265, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2267, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2269, because occupancy 0.500 <= existing 0.500 in 2b69A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2271, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2438, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2446, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2448, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2450, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2452, because occupancy 0.500 <= existing 0.500 in 2b69A Skipped atom 2454, because occupancy 0.500 <= existing 0.500 in 2b69A # T0333 read from 2b69A/merged-good-all-a2m # 2b69A read from 2b69A/merged-good-all-a2m # adding 2b69A to template set # found chain 2b69A in template set T0333 2 :LFVSSPGI 2b69A 7 :ILITGGAG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 2b69A 15 :FVGSHLTDKLMMDGHEVTVVD T0333 35 :EH 2b69A 37 :FF T0333 37 :ADRAAAAGLEVVDVAP 2b69A 46 :EHWIGHENFELINHDV T0333 53 :DYSAVKVFEQVAKDNPRFAET 2b69A 66 :YIEVDQIYHLASPASPPNYMY T0333 81 :DLEEWGVQ 2b69A 87 :NPIKTLKT T0333 93 :NRPLVDGTMALVDDYRPDLVVYEQGATV 2b69A 95 :NTIGTLNMLGLAKRVGARLLLASTSEVY T0333 141 :RTRGMH 2b69A 142 :GPRACY T0333 147 :RSIASFLTDLMDKHQ 2b69A 152 :RVAETMCYAYMKQEG T0333 192 :V 2b69A 167 :V T0333 209 :ARPEVAI 2b69A 168 :EVRVARI T0333 216 :TMGTIELQAFGIGAVEPIIAAAGEVDADF 2b69A 177 :TFGPRMHMNDGRVVSNFILQALQGEPLTV T0333 248 :LGDLDIS 2b69A 206 :YGSGSQT T0333 266 :VGWTPLHTLL 2b69A 213 :RAFQYVSDLV T0333 288 :GTVMTAIDAGIP 2b69A 223 :NGLVALMNSNVS T0333 300 :QLLAPDPRD 2b69A 236 :PVNLGNPEE T0333 309 :QFQHTAR 2b69A 247 :ILEFAQL T0333 318 :VSR 2b69A 254 :IKN T0333 321 :RGIG 2b69A 258 :VGSG T0333 325 :LV 2b69A 263 :EI T0333 327 :STS 2b69A 294 :VPL T0333 334 :ADLLRRL 2b69A 297 :EEGLNKA T0333 347 :RTAAREVREE 2b69A 304 :IHYFRKELEY Number of specific fragments extracted= 23 number of extra gaps= 0 total=1841 Number of alignments=91 # 2b69A read from 2b69A/merged-good-all-a2m # found chain 2b69A in template set Warning: unaligning (T0333)D333 because of BadResidue code BAD_PEPTIDE in next template residue (2b69A)D280 T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 2b69A 11 :GGAGFVGSHLTDKLMMDGHEVTVVD T0333 34 :AEHADRAAA 2b69A 38 :FTGRKRNVE T0333 43 :AGLEVVDVAPDY 2b69A 52 :ENFELINHDVVE T0333 66 :DNPR 2b69A 64 :PLYI T0333 129 :GVPAVQRNQSA 2b69A 68 :EVDQIYHLASP T0333 140 :WRTRGMHRSIASFLTD 2b69A 93 :KTNTIGTLNMLGLAKR T0333 156 :LMDKHQVSLPEPVATIE 2b69A 110 :GARLLLASTSEVYGDPE T0333 173 :SFPPSLLL 2b69A 129 :PQSEDYWG T0333 199 :V 2b69A 137 :H T0333 204 :LPPVP 2b69A 138 :VNPIG T0333 209 :ARPE 2b69A 166 :GVEV T0333 213 :VAITMGTIE 2b69A 171 :VARIFNTFG T0333 222 :LQAFGIGAVEPIIAAAGEV 2b69A 182 :MHMNDGRVVSNFILQALQG T0333 261 :RNVRAVGWTP 2b69A 201 :EPLTVYGSGS T0333 271 :LHTLLR 2b69A 218 :VSDLVN T0333 289 :TVMTAIDAGIP 2b69A 224 :GLVALMNSNVS T0333 300 :QLLAPDPR 2b69A 236 :PVNLGNPE T0333 312 :HTAREAVSR 2b69A 248 :LEFAQLIKN T0333 321 :RGIG 2b69A 258 :VGSG T0333 325 :LVST 2b69A 265 :QFLS T0333 330 :DKV 2b69A 276 :KRK T0333 334 :ADLLRRLIG 2b69A 281 :IKKAKLMLG T0333 358 :VALP 2b69A 290 :WEPV T0333 362 :TPAETVRRIVERIS 2b69A 295 :PLEEGLNKAIHYFR Number of specific fragments extracted= 24 number of extra gaps= 1 total=1865 Number of alignments=92 # 2b69A read from 2b69A/merged-good-all-a2m # found chain 2b69A in template set T0333 1 :MLFV 2b69A 7 :ILIT T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 2b69A 11 :GGAGFVGSHLTDKLMMDGHEVTVVD T0333 50 :VAPDYSAVKVF 2b69A 38 :FTGRKRNVEHW T0333 61 :EQVAKDNPRFAE 2b69A 59 :HDVVEPLYIEVD T0333 73 :TVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATV 2b69A 75 :LASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVY T0333 137 :QSAWRTRGMHRSI 2b69A 126 :EVHPQSEDYWGHV T0333 193 :PYGGGA 2b69A 139 :NPIGPR T0333 199 :VLGDRLPPVPARPEVAITMGTIE 2b69A 157 :MCYAYMKQEGVEVRVARIFNTFG T0333 222 :LQAFGIGAVEPIIAAAGEVDADF 2b69A 183 :HMNDGRVVSNFILQALQGEPLTV T0333 248 :LGDLDI 2b69A 206 :YGSGSQ T0333 263 :VRAVGWT 2b69A 212 :TRAFQYV T0333 287 :GGTVMTAIDAGIP 2b69A 222 :VNGLVALMNSNVS T0333 300 :QLLAPDPRD 2b69A 236 :PVNLGNPEE T0333 309 :QFQHTAREAV 2b69A 247 :ILEFAQLIKN T0333 319 :SRRGIGL 2b69A 258 :VGSGSEI T0333 326 :V 2b69A 291 :E T0333 327 :STSDKV 2b69A 293 :VVPLEE T0333 349 :AAREVREEMVAL 2b69A 299 :GLNKAIHYFRKE Number of specific fragments extracted= 18 number of extra gaps= 0 total=1883 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iirA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1iirA/merged-good-all-a2m # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0333)P52 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)R63 Warning: unaligning (T0333)V63 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)R63 Warning: unaligning (T0333)M217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)G249 Warning: unaligning (T0333)G218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)G249 T0333 1 :M 1iirA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1iirA 4 :LLATCGSRGDTEPLVALAVRVRDLGADVRMCA T0333 34 :AEHADRAAAAGLEVVDVA 1iirA 37 :PDCAERLAEVGVPHVPVG T0333 64 :AKDN 1iirA 64 :AKPL T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDY 1iirA 68 :TAEDVRRFTTEAIATQFDEIPAAAEGC T0333 110 :DLVVYEQGATVGLLA 1iirA 95 :AAVVTTGLLAAAIGV T0333 125 :ADRAGVPAVQRNQSAW 1iirA 113 :AEKLGIPYFYAFHCPS T0333 141 :RTRGMHRSIASFLTDLMDKH 1iirA 158 :NNQSAYQRYGGLLNSHRDAI T0333 161 :QVSLPE 1iirA 179 :LPPVED T0333 169 :ATIESFPPSLLLEAEPEGWFMR 1iirA 190 :YTDHPWVAADPVLAPLQPTDLD T0333 192 :VPYGGGAV 1iirA 212 :AVQTGAWI T0333 200 :LGDRLPP 1iirA 230 :LAAFLDA T0333 209 :ARPEVAIT 1iirA 237 :GPPPVYLG T0333 222 :L 1iirA 250 :A T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLDI 1iirA 251 :PADAVRVAIDAIRAHGRRVILSRGWADL T0333 255 :PLGTLPRNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 1iirA 279 :VLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGR T0333 318 :VSRRGIG 1iirA 340 :VAELGVG T0333 325 :LV 1iirA 348 :AH T0333 327 :STSDKV 1iirA 354 :PTFDSL T0333 334 :ADLLRRLIG 1iirA 360 :SAALATALT T0333 344 :ESLRTAAREVREE 1iirA 369 :PETHARATAVAGT T0333 363 :PAETVRRIVERI 1iirA 386 :GAAVAARLLLDA Number of specific fragments extracted= 22 number of extra gaps= 1 total=1905 Number of alignments=94 # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0333)P52 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)R63 Warning: unaligning (T0333)T76 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)R63 Warning: unaligning (T0333)W140 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)I149 Warning: unaligning (T0333)M217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)G249 Warning: unaligning (T0333)G218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)G249 T0333 1 :M 1iirA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAE 1iirA 4 :LLATCGSRGDTEPLVALAVRVRDLGADVRMCAPP T0333 36 :HADRAAAAGLEVVDVA 1iirA 39 :CAERLAEVGVPHVPVG T0333 77 :RPAIDLEEWGVQIAAVNRPLVDGTMALVDD 1iirA 64 :AKPLTAEDVRRFTTEAIATQFDEIPAAAEG T0333 109 :PDLVVYEQGATVGLL 1iirA 94 :CAAVVTTGLLAAAIG T0333 124 :AADRAGVPAVQRNQSA 1iirA 112 :VAEKLGIPYFYAFHCP T0333 141 :RTRGMHRSIASFLTDLM 1iirA 150 :DIPAQWERNNQSAYQRY T0333 158 :DKHQVSLPEPVATIESFPP 1iirA 192 :DHPWVAADPVLAPLQPTDL T0333 191 :WVPYGGGAVLGDR 1iirA 211 :DAVQTGAWILPDE T0333 205 :PPVP 1iirA 224 :RPLS T0333 209 :ARPEVAIT 1iirA 237 :GPPPVYLG T0333 222 :LQAFGIGAVEPIIAAA 1iirA 250 :APADAVRVAIDAIRAH T0333 241 :DADFVLA 1iirA 266 :GRRVILS T0333 254 :SPLGTLP 1iirA 273 :RGWADLV T0333 261 :RNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQF 1iirA 285 :ADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQP T0333 313 :TAREAVSRRGIGLVSTS 1iirA 335 :YYAGRVAELGVGVAHDG T0333 330 :DKVD 1iirA 355 :TFDS T0333 334 :ADLLRRLIG 1iirA 360 :SAALATALT T0333 344 :ESLRTAAREVREEM 1iirA 369 :PETHARATAVAGTI T0333 359 :ALPTPAETVRRIVERISG 1iirA 383 :RTDGAAVAARLLLDAVSR Number of specific fragments extracted= 20 number of extra gaps= 1 total=1925 Number of alignments=95 # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0333)P52 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)R63 Warning: unaligning (T0333)K65 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)R63 Warning: unaligning (T0333)S151 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)I149 Warning: unaligning (T0333)M217 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)G249 Warning: unaligning (T0333)G218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)G249 T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1iirA 3 :VLLATCGSRGDTEPLVALAVRVRDLGADVRMCA T0333 34 :AEHADRAAAAGLEVVDVA 1iirA 37 :PDCAERLAEVGVPHVPVG T0333 66 :DNPRF 1iirA 64 :AKPLT T0333 75 :A 1iirA 69 :A T0333 83 :EEWGVQIAAVNRPLVDGTMALVD 1iirA 70 :EDVRRFTTEAIATQFDEIPAAAE T0333 108 :RPDLVVYEQGATVGL 1iirA 93 :GCAAVVTTGLLAAAI T0333 123 :LAADRAGVPAVQRNQSAWRTRGMHRSIA 1iirA 111 :SVAEKLGIPYFYAFHCPSYVPSPYYPPP T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGG 1iirA 180 :PPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPD T0333 199 :VLGDRL 1iirA 225 :PLSPEL T0333 205 :PPVPARPEVAIT 1iirA 233 :FLDAGPPPVYLG T0333 222 :L 1iirA 250 :A T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLDI 1iirA 251 :PADAVRVAIDAIRAHGRRVILSRGWADL T0333 255 :PLGTLPRNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLV 1iirA 279 :VLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHD T0333 327 :STSDKVDADLLRRLIG 1iirA 353 :IPTFDSLSAALATALT T0333 344 :ESLRTAAREVREEMV 1iirA 369 :PETHARATAVAGTIR T0333 360 :LPTPAETVRRIVERIS 1iirA 384 :TDGAAVAARLLLDAVS Number of specific fragments extracted= 16 number of extra gaps= 1 total=1941 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bif/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bif expands to /projects/compbio/data/pdb/1bif.pdb.gz 1bif:Warning: there is no chain 1bif will retry with 1bifA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 686, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1628, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1630, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1634, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1845, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 2488, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 2490, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 2492, because occupancy 0.500 <= existing 0.500 in 1bif Skipped atom 2494, because occupancy 0.500 <= existing 0.500 in 1bif # T0333 read from 1bif/merged-good-all-a2m # 1bif read from 1bif/merged-good-all-a2m # adding 1bif to template set # found chain 1bif in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1bif 42 :VMVGLPARGKTYISKKLTRYLNFIGVPTREFN T0333 36 :HADRAAAA 1bif 74 :VGQYRRDM T0333 64 :AKDNPRFAETVA 1bif 82 :VKTYKSFEFFLP T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT 1bif 94 :DNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT T0333 120 :VGLLAADRAGVPAVQRNQSAW 1bif 139 :MIFNFGEQNGYKTFFVESICV T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVAT 1bif 178 :YVNRDSDEATEDFMRRIECYENSYESLDEE T0333 174 :FPPSLL 1bif 208 :QDRDLS T0333 180 :LEAEPEGWFMRWVP 1bif 217 :IMDVGQSYVVNRVA T0333 196 :GGA 1bif 231 :DHI T0333 201 :GDRLPP 1bif 241 :LMNIHV T0333 209 :ARPEVAITMGT 1bif 247 :TPRSIYLCRHG T0333 220 :IELQAF 1bif 260 :ELNLKG T0333 227 :IGAVEPIIAAAGEVD 1bif 278 :REFSKHLAQFISDQN T0333 242 :ADFVL 1bif 296 :LKVFT T0333 251 :LD 1bif 301 :SQ T0333 253 :ISPLGT 1bif 328 :AGVCEE T0333 259 :LPRNV 1bif 358 :RYPKG T0333 269 :TPLHTLLRT 1bif 363 :ESYEDLVQR T0333 278 :CTAVVHHGGGGTVMTAI 1bif 384 :NVLVICHQAVMRCLLAY Number of specific fragments extracted= 19 number of extra gaps= 0 total=1960 Number of alignments=97 # 1bif read from 1bif/merged-good-all-a2m # found chain 1bif in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1bif 42 :VMVGLPARGKTYISKKLTRYLNFIGVPTREFN T0333 56 :AVKVFEQVAKDNPRFAETVATR 1bif 74 :VGQYRRDMVKTYKSFEFFLPDN T0333 83 :EEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGA 1bif 96 :EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATN T0333 119 :TVGLLAADRAGVPAVQRNQSA 1bif 138 :AMIFNFGEQNGYKTFFVESIC T0333 209 :ARP 1bif 248 :PRS T0333 213 :VAITMG 1bif 251 :IYLCRH T0333 227 :IGAVEPIIAAAGEV 1bif 274 :SPRGREFSKHLAQF T0333 241 :DADFVLA 1bif 295 :DLKVFTS T0333 250 :DLDI 1bif 302 :QMKR T0333 254 :SPLGTLP 1bif 329 :GVCEEMT T0333 261 :RN 1bif 360 :PK T0333 268 :WTPLHTLLR 1bif 362 :GESYEDLVQ T0333 277 :TCT 1bif 381 :RQE T0333 280 :AVVHHGGGGTVMTAIDAGI 1bif 386 :LVICHQAVMRCLLAYFLDK Number of specific fragments extracted= 14 number of extra gaps= 0 total=1974 Number of alignments=98 # 1bif read from 1bif/merged-good-all-a2m # found chain 1bif in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1bif 41 :IVMVGLPARGKTYISKKLTRYLNFIGVPTREFN T0333 57 :VKVFEQVAKDNPRFAETVATRP 1bif 75 :GQYRRDMVKTYKSFEFFLPDNE T0333 84 :EWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGAT 1bif 97 :EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT T0333 120 :VGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1bif 139 :MIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKL T0333 155 :DLMDKHQVSLPEPVATIESFPPS 1bif 199 :NSYESLDEEQDRDLSYIKIMDVG T0333 188 :FMRWVPYGGGA 1bif 222 :QSYVVNRVADH T0333 204 :LPPVPARPEVAITM 1bif 242 :MNIHVTPRSIYLCR T0333 218 :GTIE 1bif 257 :GESE T0333 222 :LQAFGIGAVEPIIAAAGEV 1bif 273 :LSPRGREFSKHLAQFISDQ T0333 241 :DADFVLALG 1bif 295 :DLKVFTSQM T0333 311 :QHTAREAVS 1bif 304 :KRTIQTAEA T0333 321 :RGIGL 1bif 313 :LSVPY T0333 327 :STSDKVDADL 1bif 333 :EMTYEEIQDH T0333 343 :DESLRTAAR 1bif 344 :PLEFALRDQ T0333 359 :AL 1bif 353 :DK T0333 361 :PTPAETVRRIV 1bif 363 :ESYEDLVQRLE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1990 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gqyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gqyA expands to /projects/compbio/data/pdb/1gqy.pdb.gz 1gqyA:# T0333 read from 1gqyA/merged-good-all-a2m # 1gqyA read from 1gqyA/merged-good-all-a2m # adding 1gqyA to template set # found chain 1gqyA in template set Warning: unaligning (T0333)G10 because of BadResidue code BAD_PEPTIDE at template residue (1gqyA)G30 Warning: unaligning (T0333)D252 because of BadResidue code BAD_PEPTIDE in next template residue (1gqyA)E408 Warning: unaligning (T0333)I253 because of BadResidue code BAD_PEPTIDE at template residue (1gqyA)E408 T0333 2 :LFVSSPGI 1gqyA 21 :IHFIGIGG T0333 15 :LIQLAWGFRTAGHDVLIAV 1gqyA 31 :MSGIAEILLNEGYQISGSD T0333 34 :AEHADRAAAAGLEVVD 1gqyA 53 :GVVTQRLAQAGAKIYI T0333 50 :VAPDYSAVKVFEQVAKDN 1gqyA 74 :HIEGASVVVVSSAIKDDN T0333 84 :EWGVQIAAV 1gqyA 92 :PELVTSKQK T0333 93 :NRPLVDGT 1gqyA 107 :RAQMLAEI T0333 104 :VDDY 1gqyA 115 :MRFR T0333 109 :PDLVVYEQGA 1gqyA 119 :HGIAVAGTHG T0333 119 :TVGLLAADRAGVPAVQRNQSAW 1gqyA 134 :AMISMIYTQAKLDPTFVNGGLV T0333 141 :RTRGMHRSIASFLTD 1gqyA 305 :EEGIANEAILEALAD T0333 164 :LPEPVATIESF 1gqyA 320 :FQGAGRRFDQL T0333 179 :LLEAEPEG 1gqyA 331 :GEFIRPNG T0333 189 :MRWVPYGGGAV 1gqyA 340 :VRLVDDYGHHP T0333 200 :LGDRLP 1gqyA 360 :AREGWG T0333 209 :ARPEVAITMGTIELQ 1gqyA 366 :DKRIVMIFQPHRYSR T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDL 1gqyA 381 :TRDLFDDFVQVLSQVDALIMLDVYAA T0333 254 :SPLG 1gqyA 409 :APIV T0333 307 :R 1gqyA 413 :G T0333 308 :DQFQHTAR 1gqyA 415 :DSKSLCRS T0333 318 :VSRRGIG 1gqyA 423 :IRNLGKV T0333 325 :LV 1gqyA 432 :IL T0333 327 :STSDKV 1gqyA 435 :SDTSQL T0333 334 :ADLLRRLI 1gqyA 441 :GDVLDQII T0333 346 :LRTAAREVREEMV 1gqyA 462 :VSKISRGLAESWK Number of specific fragments extracted= 24 number of extra gaps= 2 total=2014 Number of alignments=100 # 1gqyA read from 1gqyA/merged-good-all-a2m # found chain 1gqyA in template set Warning: unaligning (T0333)P14 because of BadResidue code BAD_PEPTIDE at template residue (1gqyA)G30 Warning: unaligning (T0333)G201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gqyA)D205 T0333 15 :LIQLAWGFRTAGHDVLIAVAE 1gqyA 31 :MSGIAEILLNEGYQISGSDIA T0333 36 :HADRAAAAGLEVVDVAPDY 1gqyA 55 :VTQRLAQAGAKIYIGHAEE T0333 56 :AV 1gqyA 74 :HI T0333 65 :KDNPRFAETVATRPAIDLEEWGVQ 1gqyA 76 :EGASVVVVSSAIKDDNPELVTSKQ T0333 89 :IAA 1gqyA 107 :RAQ T0333 99 :GTMALVDD 1gqyA 110 :MLAEIMRF T0333 108 :RPDLVVYEQGA 1gqyA 118 :RHGIAVAGTHG T0333 119 :TVGLLAADRAGVPAVQRNQSA 1gqyA 134 :AMISMIYTQAKLDPTFVNGGL T0333 158 :DKHQVSLPEPVATIESFPP 1gqyA 168 :RYLIAEADESDASFLHLQP T0333 191 :WVPYGGGAVL 1gqyA 187 :MVSVVTNMEP T0333 209 :ARP 1gqyA 222 :FYG T0333 213 :VAITM 1gqyA 225 :LAVMC T0333 223 :QAF 1gqyA 230 :ADD T0333 228 :GAVEPIIAAA 1gqyA 233 :PVLMELVPKV T0333 241 :DADFVLALGDLDI 1gqyA 243 :GRQVITYGFSEQA T0333 254 :SPLGTLP 1gqyA 321 :QGAGRRF T0333 261 :RN 1gqyA 336 :PN T0333 263 :VRAVGWTP 1gqyA 340 :VRLVDDYG T0333 271 :LHTLLR 1gqyA 353 :VGVTIK T0333 280 :AVVHHG 1gqyA 370 :VMIFQP T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 1gqyA 384 :LFDDFVQVLSQVDALIMLDVYA T0333 308 :DQF 1gqyA 415 :DSK T0333 313 :TAREAVSRRG 1gqyA 418 :SLCRSIRNLG T0333 323 :I 1gqyA 430 :D T0333 325 :LVST 1gqyA 432 :ILVS T0333 330 :DKVD 1gqyA 436 :DTSQ T0333 334 :ADLLRRLIG 1gqyA 441 :GDVLDQIIQ T0333 359 :AL 1gqyA 450 :DG T0333 361 :PTPAETVRRIVERISG 1gqyA 460 :GSVSKISRGLAESWKN Number of specific fragments extracted= 29 number of extra gaps= 1 total=2043 Number of alignments=101 # 1gqyA read from 1gqyA/merged-good-all-a2m # found chain 1gqyA in template set Warning: unaligning (T0333)I9 because of BadResidue code BAD_PEPTIDE in next template residue (1gqyA)G30 Warning: unaligning (T0333)G10 because of BadResidue code BAD_PEPTIDE at template residue (1gqyA)G30 Warning: unaligning (T0333)D252 because of BadResidue code BAD_PEPTIDE in next template residue (1gqyA)E408 Warning: unaligning (T0333)I253 because of BadResidue code BAD_PEPTIDE at template residue (1gqyA)E408 T0333 1 :MLFVSSPG 1gqyA 21 :IHFIGIGG T0333 15 :LIQLAWGFRTAGHDVLIAV 1gqyA 31 :MSGIAEILLNEGYQISGSD T0333 34 :AEHADRAAAAGLEVVDVAPDYSAVKVF 1gqyA 53 :GVVTQRLAQAGAKIYIGHAEEHIEGAS T0333 61 :EQVAKDNPR 1gqyA 95 :VTSKQKRIP T0333 96 :LVDGTMALVDDYRPDLVVYEQGATVGL 1gqyA 107 :RAQMLAEIMRFRHGIAVAGTHGKTTTT T0333 123 :LAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1gqyA 138 :MIYTQAKLDPTFVNGGLVKSAGKNAHLGASRY T0333 155 :DLMDKHQVSLPEPVATIESFPPS 1gqyA 311 :EAILEALADFQGAGRRFDQLGEF T0333 183 :EPEGWFMRWVPYGGGA 1gqyA 334 :IRPNGKVRLVDDYGHH T0333 204 :LPPVPARPEVAITMGTIELQ 1gqyA 361 :REGWGDKRIVMIFQPHRYSR T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDL 1gqyA 381 :TRDLFDDFVQVLSQVDALIMLDVYAA T0333 254 :SPLG 1gqyA 409 :APIV T0333 306 :PRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGD 1gqyA 413 :GADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQD T0333 345 :SLRTAAREVREEMV 1gqyA 461 :SVSKISRGLAESWK Number of specific fragments extracted= 13 number of extra gaps= 2 total=2056 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1thtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1thtA expands to /projects/compbio/data/pdb/1tht.pdb.gz 1thtA:# T0333 read from 1thtA/merged-good-all-a2m # 1thtA read from 1thtA/merged-good-all-a2m # adding 1thtA to template set # found chain 1thtA in template set Warning: unaligning (T0333)D38 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1thtA)E83 Warning: unaligning (T0333)V47 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1thtA)E83 Warning: unaligning (T0333)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)G169 Warning: unaligning (T0333)G196 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)G169 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHA 1thtA 38 :ILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHH T0333 48 :V 1thtA 84 :F T0333 81 :DLE 1thtA 85 :TMT T0333 88 :QIAA 1thtA 88 :TGKN T0333 96 :LVDGTMALVDDYRP 1thtA 92 :SLCTVYHWLQTKGT T0333 110 :DLVVYEQGATVGLLAADRAG 1thtA 107 :NIGLIAASLSARVAYEVISD T0333 130 :VPAVQRNQS 1thtA 129 :LSFLITAVG T0333 146 :HRSIASFLTDLMDKHQVSL 1thtA 138 :VVNLRDTLEKALGFDYLSL T0333 184 :PEGWFMRWVPY 1thtA 157 :PIDELPNDLDF T0333 197 :GAV 1thtA 170 :HKL T0333 200 :LGDRLPP 1thtA 182 :FEHHWDT T0333 230 :VEPIIAAAGEVDADFVLALGDLD 1thtA 189 :LDSTLDKVANTSVPLIAFTANND T0333 253 :ISPLGT 1thtA 223 :LAHIRT T0333 261 :RNVRAVGWT 1thtA 229 :GHCKLYSLL T0333 270 :P 1thtA 242 :D T0333 271 :LHTLL 1thtA 250 :LRNFY T0333 288 :GTVMTAID 1thtA 255 :QSVTKAAI T0333 318 :VSRRGIGLV 1thtA 263 :AMDGGSLEI T0333 327 :ST 1thtA 278 :PD T0333 334 :ADLLRRL 1thtA 280 :FEQLTIA T0333 347 :RTAAREVREEMVALP 1thtA 287 :TVNERRLKAEIENRT Number of specific fragments extracted= 21 number of extra gaps= 1 total=2077 Number of alignments=103 # 1thtA read from 1thtA/merged-good-all-a2m # found chain 1thtA in template set Warning: unaligning (T0333)F70 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1thtA)E83 Warning: unaligning (T0333)A79 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1thtA)E83 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIA 1thtA 38 :ILIASGFARRMDHFAGLAEYLSTNGFHVFRY T0333 65 :KDNPR 1thtA 69 :DSLHH T0333 80 :IDLEEWGVQIA 1thtA 84 :FTMTTGKNSLC T0333 99 :GTMALVDDYRP 1thtA 95 :TVYHWLQTKGT T0333 110 :DLVVYEQGATVGLLAADRAG 1thtA 107 :NIGLIAASLSARVAYEVISD T0333 130 :VPAVQRNQSAWRTRGMHRSIA 1thtA 129 :LSFLITAVGVVNLRDTLEKAL T0333 164 :LPEPVATIE 1thtA 150 :GFDYLSLPI T0333 173 :SFPP 1thtA 160 :ELPN T0333 191 :WVPY 1thtA 164 :DLDF T0333 209 :ARPE 1thtA 198 :NTSV T0333 213 :VAITMGTIE 1thtA 203 :LIAFTANND T0333 223 :QAFGIGAVEPIIAAAGE 1thtA 212 :DWVKQEEVYDMLAHIRT T0333 261 :RNVRAVGWT 1thtA 229 :GHCKLYSLL T0333 271 :LHTLLR 1thtA 250 :LRNFYQ T0333 314 :AREAVSR 1thtA 257 :VTKAAIA T0333 321 :RG 1thtA 266 :GG T0333 343 :DESLRTAAREVREEMVA 1thtA 279 :DFEQLTIATVNERRLKA Number of specific fragments extracted= 17 number of extra gaps= 0 total=2094 Number of alignments=104 # 1thtA read from 1thtA/merged-good-all-a2m # found chain 1thtA in template set Warning: unaligning (T0333)Q62 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1thtA)E83 Warning: unaligning (T0333)A71 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1thtA)E83 Warning: unaligning (T0333)V192 because of BadResidue code BAD_PEPTIDE in next template residue (1thtA)G169 Warning: unaligning (T0333)P193 because of BadResidue code BAD_PEPTIDE at template residue (1thtA)G169 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1thtA 38 :ILIASGFARRMDHFAGLAEYLSTNGFHVFRYD T0333 34 :AE 1thtA 71 :LH T0333 61 :E 1thtA 73 :H T0333 72 :E 1thtA 84 :F T0333 78 :P 1thtA 85 :T T0333 86 :G 1thtA 86 :M T0333 91 :AVNRPLVDGTMALVDDYRP 1thtA 87 :TTGKNSLCTVYHWLQTKGT T0333 110 :DLVVYE 1thtA 107 :NIGLIA T0333 117 :GATVGLLAADRA 1thtA 113 :ASLSARVAYEVI T0333 129 :GVPAVQRNQSAWRTRGMHRSIASF 1thtA 128 :ELSFLITAVGVVNLRDTLEKALGF T0333 176 :PSLLLEAEPEGWFMRW 1thtA 152 :DYLSLPIDELPNDLDF T0333 194 :YGGGA 1thtA 170 :HKLGS T0333 225 :FG 1thtA 187 :DT T0333 230 :VEPIIAAAGEVDADFVLALGD 1thtA 189 :LDSTLDKVANTSVPLIAFTAN T0333 251 :LDISPL 1thtA 214 :VKQEEV T0333 259 :LPRNVRAVGWT 1thtA 227 :RTGHCKLYSLL T0333 270 :PL 1thtA 242 :DL T0333 287 :GGTVMTAID 1thtA 254 :YQSVTKAAI T0333 317 :AVSRRGIGLV 1thtA 263 :AMDGGSLEID T0333 327 :STSDKVDAD 1thtA 277 :EPDFEQLTI T0333 346 :LRTAAREVREEMVALP 1thtA 286 :ATVNERRLKAEIENRT Number of specific fragments extracted= 21 number of extra gaps= 1 total=2115 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jdbB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jdbB expands to /projects/compbio/data/pdb/1jdb.pdb.gz 1jdbB:Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 993, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 995, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 999, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3191, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3193, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3195, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3197, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3199, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3290, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3292, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3294, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 3296, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 4027, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 4029, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 4031, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 4033, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 5771, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 5773, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 5775, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 5777, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6942, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6944, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6946, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6948, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6950, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6952, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 6954, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 7362, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 7364, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 7366, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 7368, because occupancy 0.500 <= existing 0.500 in 1jdbB Skipped atom 7370, because occupancy 0.500 <= existing 0.500 in 1jdbB # T0333 read from 1jdbB/merged-good-all-a2m # 1jdbB read from 1jdbB/merged-good-all-a2m # adding 1jdbB to template set # found chain 1jdbB in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1jdbB)D557 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1jdbB)D557 Warning: unaligning (T0333)R210 because of BadResidue code BAD_PEPTIDE in next template residue (1jdbB)E559 Warning: unaligning (T0333)P211 because of BadResidue code BAD_PEPTIDE at template residue (1jdbB)E559 T0333 2 :LFVSSPGI 1jdbB 9 :ILILGAGP T0333 10 :GHL 1jdbB 20 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1jdbB 27 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1jdbB 50 :PATIMTDPEM T0333 45 :LEVVDVAP 1jdbB 60 :ADATYIEP T0333 94 :RPL 1jdbB 70 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1jdbB 73 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1jdbB 111 :GVT T0333 135 :RNQSA 1jdbB 114 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1jdbB 504 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1jdbB 520 :DLHPVYKRVDTCAAE T0333 199 :V 1jdbB 535 :F T0333 200 :LGDR 1jdbB 546 :YEEE T0333 204 :LPPV 1jdbB 552 :ANPS T0333 212 :EVAITMG 1jdbB 560 :KIMVLGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1jdbB 571 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1jdbB 609 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1jdbB 621 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1jdbB 636 :GVIVQYGGQ T0333 309 :QFQHTAR 1jdbB 646 :PLKLARA T0333 318 :VSRRGIG 1jdbB 653 :LEAAGVP T0333 325 :LVST 1jdbB 661 :IGTS T0333 334 :ADLLRRLIG 1jdbB 665 :PDAIDRAED T0333 347 :RTAAREVREE 1jdbB 674 :RERFQHAVER T0333 362 :TPAETVRRIVERI 1jdbB 695 :TAIEMAVEKAKEI Number of specific fragments extracted= 25 number of extra gaps= 1 total=2140 Number of alignments=106 # 1jdbB read from 1jdbB/merged-good-all-a2m # found chain 1jdbB in template set T0333 2 :LF 1jdbB 11 :IL T0333 5 :SSPGI 1jdbB 14 :AGPIV T0333 10 :GHL 1jdbB 20 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1jdbB 27 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYS 1jdbB 60 :ADATYIEPIHW T0333 98 :DGTMALVDDYRPDLVVYEQGATVGLLAADRA 1jdbB 71 :EVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1jdbB 111 :GVT T0333 135 :RNQSA 1jdbB 114 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1jdbB 799 :TLSQEIQDVMRQQVQKLA T0333 173 :SFPPSLLLE 1jdbB 877 :GVTKEVIPP T0333 187 :WFMRWVPYGGGAVLGDRLPPV 1jdbB 886 :YYSVKEVVLPFNKFPGVDPLL T0333 209 :ARPEVAITM 1jdbB 940 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLA 1jdbB 949 :REGDKERVVDLAAKLLKQGFELDAT T0333 254 :SPLG 1jdbB 981 :GEAG T0333 261 :RNVRAVGWT 1jdbB 985 :INPRLVNKV T0333 271 :LHTLLR 1jdbB 1000 :IQDRIK T0333 277 :TCTAVVHHG 1jdbB 1008 :EYTYIINTT T0333 286 :GGGTV 1jdbB 1018 :GRRAI T0333 308 :DQF 1jdbB 1024 :DSR T0333 313 :TAREAVSRRGIGLV 1jdbB 1027 :VIRRSALQYKVHYD Number of specific fragments extracted= 20 number of extra gaps= 0 total=2160 Number of alignments=107 # 1jdbB read from 1jdbB/merged-good-all-a2m # found chain 1jdbB in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1jdbB)D557 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1jdbB)D557 Warning: unaligning (T0333)R210 because of BadResidue code BAD_PEPTIDE in next template residue (1jdbB)E559 Warning: unaligning (T0333)P211 because of BadResidue code BAD_PEPTIDE at template residue (1jdbB)E559 T0333 1 :MLFVSSPGI 1jdbB 9 :ILILGAGPI T0333 10 :GH 1jdbB 20 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1jdbB 26 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1jdbB 50 :PATI T0333 45 :LEVVDVAPDY 1jdbB 60 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1jdbB 70 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1jdbB 111 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1jdbB 113 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1jdbB 507 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1jdbB 551 :EANPS T0333 212 :EVAITMGTIELQAFGIGAVEPIIA 1jdbB 560 :KIMVLGGGPNRIGQGIEFDYCCVH T0333 236 :AAGEVDADFVLALGD 1jdbB 587 :ALREDGYETIMVNCN T0333 251 :LD 1jdbB 603 :ET T0333 271 :LHTLLRTCTAVVH 1jdbB 605 :VSTDYDTSDRLYF T0333 284 :HGGGGTVMTAIDAGIP 1jdbB 619 :PVTLEDVLEIVRIEKP T0333 300 :QLLAP 1jdbB 636 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1jdbB 642 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1jdbB 664 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1jdbB 666 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1jdbB 694 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=2180 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w78A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w78A expands to /projects/compbio/data/pdb/1w78.pdb.gz 1w78A:Bad short name: CX for alphabet: pdb_atoms Bad short name: OX1 for alphabet: pdb_atoms Bad short name: OX2 for alphabet: pdb_atoms # T0333 read from 1w78A/merged-good-all-a2m # 1w78A read from 1w78A/merged-good-all-a2m # adding 1w78A to template set # found chain 1w78A in template set Warning: unaligning (T0333)I253 because of BadResidue code BAD_PEPTIDE at template residue (1w78A)G359 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAA 1w78A 51 :VFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTER T0333 57 :VKVFEQVAKD 1w78A 93 :VRVQGQELPE T0333 91 :AVNRPLVDGTMALVDDYRPD 1w78A 103 :SAHTASFAEIESARGDISLT T0333 117 :GATVGLLAADRAGVPAVQRNQSAW 1w78A 127 :GTLSALWLFKQAQLDVVILEVGLG T0333 141 :RTRGMHRSIASFLTDLMDK 1w78A 201 :GEPEMPSTIADVAQEKGAL T0333 161 :QVS 1w78A 220 :LQR T0333 165 :PEPVATIESFPPSLLLEA 1w78A 223 :RGVEWNYSVTDHDWAFSD T0333 184 :PEGWFMRWVPYGGGAV 1w78A 241 :AHGTLENLPLPLVPQP T0333 209 :ARPEVAITMGT 1w78A 295 :ESPRVIFDVAH T0333 226 :GIGAVEPIIAAAGEVD 1w78A 306 :NPHAAEYLTGRMKALP T0333 242 :ADFVLALG 1w78A 324 :GRVLAVIG T0333 250 :DLD 1w78A 335 :DKD T0333 254 :SPLGT 1w78A 360 :PRGAT T0333 261 :RNVRAVGWT 1w78A 373 :GNGKSFDSV T0333 271 :LHTLLRTC 1w78A 385 :WDAAMADA T0333 279 :TAVVHHGGGGTVMTAID 1w78A 396 :DTVLVCGSFHTVAHVME Number of specific fragments extracted= 16 number of extra gaps= 1 total=2196 Number of alignments=109 # 1w78A read from 1w78A/merged-good-all-a2m # found chain 1w78A in template set Warning: unaligning (T0333)F152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1w78A)A189 Warning: unaligning (T0333)T154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1w78A)A189 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAE 1w78A 51 :VFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSP T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIA 1w78A 85 :HLVRYTERVRVQGQELPESAHTASFA T0333 99 :GTMALVDDYRP 1w78A 111 :EIESARGDISL T0333 116 :QGATVGLLAADRAGVPAVQRNQSA 1w78A 126 :YGTLSALWLFKQAQLDVVILEVGL T0333 140 :WRTRGMHRSIAS 1w78A 175 :DWLGPDRESIGR T0333 155 :DLM 1w78A 190 :GIF T0333 158 :DKHQVSLPEPVATIE 1w78A 196 :KPAIVGEPEMPSTIA T0333 173 :SF 1w78A 217 :GA T0333 191 :WVPYGGGAVLGDR 1w78A 219 :LLQRRGVEWNYSV T0333 205 :PPVP 1w78A 232 :TDHD T0333 209 :ARPEVAITMGTIE 1w78A 295 :ESPRVIFDVAHNP T0333 223 :QAF 1w78A 308 :HAA T0333 228 :GAVEPIIAAAGE 1w78A 311 :EYLTGRMKALPK T0333 241 :DADFVLALG 1w78A 323 :NGRVLAVIG T0333 250 :DL 1w78A 334 :HD T0333 254 :SPLG 1w78A 336 :KDIA T0333 313 :TAREAVSRRGIGLVSTS 1w78A 340 :GTLAWLKSVVDDWYCAP T0333 330 :DKVD 1w78A 360 :PRGA T0333 334 :ADLLRRLIGD 1w78A 365 :AEQLLEHLGN T0333 360 :LP 1w78A 377 :SF T0333 362 :TPAETVRRIVER 1w78A 380 :SVAQAWDAAMAD Number of specific fragments extracted= 21 number of extra gaps= 0 total=2217 Number of alignments=110 # 1w78A read from 1w78A/merged-good-all-a2m # found chain 1w78A in template set Warning: unaligning (T0333)D250 because of BadResidue code BAD_PEPTIDE in next template residue (1w78A)G359 Warning: unaligning (T0333)L251 because of BadResidue code BAD_PEPTIDE at template residue (1w78A)G359 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1w78A 51 :VFTVAGTNGKGTTCRTLESILMAAGYKVGVYS T0333 34 :AEHAD 1w78A 84 :PHLVR T0333 56 :AV 1w78A 89 :YT T0333 59 :VF 1w78A 91 :ER T0333 90 :AAVNRPLVDGTMALVDDYRPD 1w78A 102 :ESAHTASFAEIESARGDISLT T0333 116 :QGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1w78A 126 :YGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVA T0333 174 :FPPSLLLEAEPE 1w78A 285 :ILPGRFQIVSES T0333 188 :FMRWVPYGGGA 1w78A 297 :PRVIFDVAHNP T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1w78A 312 :YLTGRMKALPKNGRVLAVIGMLH T0333 222 :LQ 1w78A 336 :KD T0333 230 :VEPIIAAAGEVDADFVLALG 1w78A 338 :IAGTLAWLKSVVDDWYCAPL T0333 252 :DI 1w78A 360 :PR T0333 327 :STSDKVDADLL 1w78A 362 :GATAEQLLEHL T0333 342 :GD 1w78A 373 :GN T0333 360 :LPTPAETVRRIVERIS 1w78A 378 :FDSVAQAWDAAMADAK Number of specific fragments extracted= 15 number of extra gaps= 1 total=2232 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yrbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yrbA expands to /projects/compbio/data/pdb/1yrb.pdb.gz 1yrbA:WARNING: atom 113 has residue number 1 < previous residue 500 in 1yrbA Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1286, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1290, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1296, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1298, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1698, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1704, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1706, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1708, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1810, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1845, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1847, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 1928, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1930, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1932, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1934, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1936, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1938, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 1940, because occupancy 0.300 <= existing 0.700 in 1yrbA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 1yrbA Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 1yrbA # T0333 read from 1yrbA/merged-good-all-a2m # 1yrbA read from 1yrbA/merged-good-all-a2m # adding 1yrbA to template set # found chain 1yrbA in template set T0333 1 :M 1yrbA 1 :M T0333 2 :LFVSS 1yrbA 3 :VVFVG T0333 7 :PGIGHLFPLIQLAWGFRT 1yrbA 9 :AGSGKTTLTGEFGRYLED T0333 26 :GHDVLIAV 1yrbA 27 :NYKVAYVN T0333 34 :A 1yrbA 37 :T T0333 46 :EVVDVAPDYS 1yrbA 38 :GVKELPYEPS T0333 56 :AVKVFEQVAKDNPRFA 1yrbA 53 :FVTVEEIMREGYGPNG T0333 81 :DLEEWGVQIAAVNRPLVDGTMALVDDY 1yrbA 69 :AIVESYDRLMEKFNEYLNKILRLEKEN T0333 110 :DLVVYEQGAT 1yrbA 96 :DYVLIDTPGQ T0333 120 :VGLLAADRAGVPAVQRNQS 1yrbA 114 :FGVRLMENLPYPLVVYISD T0333 201 :GDRLPP 1yrbA 133 :PEILKK T0333 226 :GIGAVEPIIAAAG 1yrbA 139 :PNDYCFVRFFALL T0333 239 :EVDADFVLALGD 1yrbA 155 :RLGATTIPALNK T0333 253 :ISPLGT 1yrbA 167 :VDLLSE T0333 307 :RDQFQHTAR 1yrbA 173 :EEKERHRKY T0333 318 :VSR 1yrbA 182 :FED T0333 334 :ADLLRRLIG 1yrbA 185 :IDYLTARLK T0333 343 :DES 1yrbA 197 :SMQ T0333 346 :LRTAAREVREE 1yrbA 203 :AYKMCSMMTEV T0333 357 :MVALP 1yrbA 224 :AKTRE T0333 363 :PAETVRRIVERI 1yrbA 229 :GFEDLETLAYEH Number of specific fragments extracted= 21 number of extra gaps= 0 total=2253 Number of alignments=112 # 1yrbA read from 1yrbA/merged-good-all-a2m # found chain 1yrbA in template set T0333 1 :M 1yrbA 1 :M T0333 2 :LFVSSPGI 1yrbA 3 :VVFVGTAG T0333 10 :GHLFPLIQLAWGFRT 1yrbA 12 :GKTTLTGEFGRYLED T0333 26 :GHDVLIAV 1yrbA 27 :NYKVAYVN T0333 34 :AEHA 1yrbA 37 :TGVK T0333 48 :VDVAPDYSAVKVFEQ 1yrbA 48 :IDVREFVTVEEIMRE T0333 66 :DN 1yrbA 63 :GY T0333 80 :IDLEEWGVQIAAVNRPLVD 1yrbA 65 :GPNGAIVESYDRLMEKFNE T0333 99 :GTMALVDD 1yrbA 87 :KILRLEKE T0333 109 :PDLVVYEQGA 1yrbA 95 :NDYVLIDTPG T0333 120 :V 1yrbA 106 :M T0333 141 :RTRGMHRSIASFLTDL 1yrbA 107 :ETFLFHEFGVRLMENL T0333 175 :PPS 1yrbA 123 :PYP T0333 213 :VAITMGTIELQAFGIGA 1yrbA 126 :LVVYISDPEILKKPNDY T0333 230 :VEPIIAAA 1yrbA 149 :ALLIDLRL T0333 241 :DADFVLALGDLD 1yrbA 157 :GATTIPALNKVD T0333 255 :PLG 1yrbA 169 :LLS T0333 308 :DQFQHTAREAVSR 1yrbA 172 :EEEKERHRKYFED T0333 334 :ADLLRRLIG 1yrbA 185 :IDYLTARLK T0333 343 :DESLRTA 1yrbA 197 :SMQGLMA T0333 351 :REVREEMV 1yrbA 204 :YKMCSMMT T0333 359 :ALPTPAETVRRIVERIS 1yrbA 226 :TREGFEDLETLAYEHYC Number of specific fragments extracted= 22 number of extra gaps= 0 total=2275 Number of alignments=113 # 1yrbA read from 1yrbA/merged-good-all-a2m # found chain 1yrbA in template set T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRT 1yrbA 3 :VVFVGTAGSGKTTLTGEFGRYLED T0333 26 :GHDVLIAV 1yrbA 27 :NYKVAYVN T0333 43 :AGLEVVDVAPDYSAVKVF 1yrbA 37 :TGVKELPYEPSIDVREFV T0333 61 :EQVAKDNPR 1yrbA 57 :EEIMREGYG T0333 78 :PAIDLEEWGVQIAAVNRPLVDGTMALVDDY 1yrbA 66 :PNGAIVESYDRLMEKFNEYLNKILRLEKEN T0333 110 :DLVVYEQGAT 1yrbA 96 :DYVLIDTPGQ T0333 120 :VGLLAADRAGVPAVQRNQSAWRTRGMHR 1yrbA 114 :FGVRLMENLPYPLVVYISDPEILKKPND T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDL 1yrbA 142 :YCFVRFFALLIDLRLGATTIPALNKV T0333 254 :S 1yrbA 168 :D T0333 327 :STSDKVDAD 1yrbA 169 :LLSEEEKER T0333 346 :LRTAAR 1yrbA 178 :HRKYFE T0333 352 :EVREEMVALPTPA 1yrbA 187 :YLTARLKLDPSMQ T0333 365 :ETVRRIVER 1yrbA 202 :MAYKMCSMM Number of specific fragments extracted= 13 number of extra gaps= 0 total=2288 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2acwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333/2acwA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0333/2acwA/merged-good-all-a2m.gz for input Trying 2acwA/merged-good-all-a2m Error: Couldn't open file 2acwA/merged-good-all-a2m or 2acwA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ve1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ve1A expands to /projects/compbio/data/pdb/1ve1.pdb.gz 1ve1A:# T0333 read from 1ve1A/merged-good-all-a2m # 1ve1A read from 1ve1A/merged-good-all-a2m # adding 1ve1A to template set # found chain 1ve1A in template set T0333 2 :LFVSSPGI 1ve1A 64 :VIVEPTSG T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEH 1ve1A 72 :NTGIGLAMIAASRGYRLILTMPAQ T0333 37 :ADRAAAAGLEVVDVAPDYSAVKVFEQVAK 1ve1A 101 :KRVLKAFGAELVLTDPERRMLAAREEALR T0333 66 :DNPRFAET 1ve1A 135 :GAFMPDQF T0333 81 :DLEEWGVQIAAVNR 1ve1A 143 :KNPANVRAHYETTG T0333 98 :DGTMALVDD 1ve1A 157 :PELYEALEG T0333 108 :RPDLVVYE 1ve1A 166 :RIDAFVYG T0333 116 :QGATVGLLAADRA 1ve1A 175 :GTGGTITGVGRYL T0333 129 :GVPAVQRNQS 1ve1A 193 :HVKVIAVEPA T0333 178 :LLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAI 1ve1A 203 :RSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV T0333 226 :GIGAVEPIIAAAGEVDADF 1ve1A 242 :EEDAFPLARRLAREEGLFL T0333 285 :GGGGTVMTAIDA 1ve1A 263 :SSGGIVWAALQV T0333 297 :GIPQLLA 1ve1A 281 :GKRVACI T0333 304 :PDP 1ve1A 289 :PDG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2302 Number of alignments=115 # 1ve1A read from 1ve1A/merged-good-all-a2m # found chain 1ve1A in template set T0333 3 :FVSSPG 1ve1A 65 :IVEPTS T0333 12 :LFPLIQLAWGFRTAGHDVLIAVAE 1ve1A 71 :GNTGIGLAMIAASRGYRLILTMPA T0333 36 :HA 1ve1A 96 :MS T0333 38 :DRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAI 1ve1A 102 :RVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKN T0333 86 :GVQIAAVNRPLVDGTMALVDD 1ve1A 145 :PANVRAHYETTGPELYEALEG T0333 108 :RPDLVVYEQGA 1ve1A 166 :RIDAFVYGSGT T0333 119 :TVGLLAADRA 1ve1A 178 :GTITGVGRYL T0333 129 :GVPAVQRNQSA 1ve1A 193 :HVKVIAVEPAR T0333 147 :R 1ve1A 230 :D T0333 154 :TDLMDKHQVSLPE 1ve1A 231 :LSLLDGVIQVWEE T0333 167 :PVATIE 1ve1A 245 :AFPLAR T0333 173 :SFPPS 1ve1A 257 :GLFLG T0333 220 :IE 1ve1A 262 :MS T0333 223 :QAFGIGAVEPIIAAAGE 1ve1A 264 :SGGIVWAALQVARELGP T0333 241 :DADFVLALG 1ve1A 281 :GKRVACISP T0333 250 :DLDI 1ve1A 291 :GGWK Number of specific fragments extracted= 16 number of extra gaps= 0 total=2318 Number of alignments=116 # 1ve1A read from 1ve1A/merged-good-all-a2m # found chain 1ve1A in template set T0333 4 :VSSPGIG 1ve1A 65 :IVEPTSG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1ve1A 72 :NTGIGLAMIAASRGYRLILTM T0333 34 :A 1ve1A 94 :A T0333 35 :EHADRAAAAGLEVVDVAPDYSAVKVF 1ve1A 99 :ERKRVLKAFGAELVLTDPERRMLAAR T0333 61 :EQVAKDNPRFAETVATRPA 1ve1A 128 :LRLKEELGAFMPDQFKNPA T0333 88 :QIAAVNRPLVDGTMALVDD 1ve1A 147 :NVRAHYETTGPELYEALEG T0333 108 :RPDLVVYEQGATVGL 1ve1A 166 :RIDAFVYGSGTGGTI T0333 123 :LAADRA 1ve1A 182 :GVGRYL T0333 129 :GVPAVQRNQSAWRT 1ve1A 193 :HVKVIAVEPARSNV T0333 161 :QVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1ve1A 207 :LSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEED T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1ve1A 271 :ALQVARELGPGKRVACISPDGGW T0333 222 :L 1ve1A 295 :Y Number of specific fragments extracted= 12 number of extra gaps= 0 total=2330 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vcoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vcoA expands to /projects/compbio/data/pdb/1vco.pdb.gz 1vcoA:# T0333 read from 1vcoA/merged-good-all-a2m # 1vcoA read from 1vcoA/merged-good-all-a2m # adding 1vcoA to template set # found chain 1vcoA in template set Warning: unaligning (T0333)L251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)D314 Warning: unaligning (T0333)L256 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)A347 Warning: unaligning (T0333)T269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vcoA)A347 T0333 2 :LFVSSPGI 1vcoA 15 :VFITGGVV T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAV 1vcoA 26 :GKGILTSSLGALLRARGYRVTAIK T0333 34 :AEHADRAAAAGL 1vcoA 52 :PYVNVDAGTMRP T0333 46 :EVVDVAPDYS 1vcoA 67 :GEVFVTADGA T0333 58 :KVFEQVAKDNPR 1vcoA 107 :SVIQKERRGEYL T0333 71 :AETVATRP 1vcoA 119 :SQTVQVIP T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYEQGAT 1vcoA 127 :HITDEIKERIRKVAEEQKAEIVVVEVGGT T0333 120 :VGLLAADRA 1vcoA 163 :PFLEAIRQF T0333 129 :GVPAVQRNQSAW 1vcoA 178 :GNTLYLHLTLVP T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 1vcoA 194 :SEEFKTKPTQHSVATLRGVGIQPD T0333 169 :ATIESFPPSLL 1vcoA 222 :RSARPVPEEVR T0333 181 :EAEPE 1vcoA 236 :ALFTN T0333 187 :WFMRWVPYGGGAV 1vcoA 241 :VRPGHVFSSPTVE T0333 200 :LGDRLPP 1vcoA 271 :VERALGL T0333 209 :ARP 1vcoA 278 :EAV T0333 224 :AFGIGAVEPIIAAAGEVD 1vcoA 281 :IPNLSFWQEAVRVLKHPE T0333 242 :ADFVLALGD 1vcoA 301 :VKIAIAGKY T0333 253 :ISP 1vcoA 341 :AES T0333 270 :PLHTLLRTCTAVVHHG 1vcoA 348 :DLEEAFRDVSGILVPG T0333 287 :GGTVMTAIDAGIPQLLA 1vcoA 374 :VRAAQYARERKIPYLGI Number of specific fragments extracted= 20 number of extra gaps= 0 total=2350 Number of alignments=118 # 1vcoA read from 1vcoA/merged-good-all-a2m # found chain 1vcoA in template set Warning: unaligning (T0333)E83 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1vcoA)Y85 Warning: unaligning (T0333)E84 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1vcoA)Y85 Warning: unaligning (T0333)E221 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)D314 Warning: unaligning (T0333)F225 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vcoA)D314 Warning: unaligning (T0333)L256 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)A347 Warning: unaligning (T0333)T269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vcoA)A347 T0333 3 :FVSSPGI 1vcoA 16 :FITGGVV T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAV 1vcoA 26 :GKGILTSSLGALLRARGYRVTAIK T0333 34 :AEHADRA 1vcoA 52 :PYVNVDA T0333 52 :PDYSAVK 1vcoA 59 :GTMRPYE T0333 65 :KDNPRFAETVATRPAIDL 1vcoA 66 :HGEVFVTADGAETDLDIG T0333 85 :WGVQ 1vcoA 86 :ERFL T0333 89 :IAAVNR 1vcoA 129 :TDEIKE T0333 99 :GTMALVDDYRPDLVVY 1vcoA 135 :RIRKVAEEQKAEIVVV T0333 115 :EQGA 1vcoA 154 :GTVG T0333 119 :TVGLLAADRA 1vcoA 162 :LPFLEAIRQF T0333 130 :VPAVQRNQSA 1vcoA 180 :TLYLHLTLVP T0333 140 :WRTRGMHRSIASFLTD 1vcoA 196 :EFKTKPTQHSVATLRG T0333 156 :LMDKHQVSLPE 1vcoA 215 :QPDILVLRSAR T0333 167 :PVATIE 1vcoA 231 :VRRKVA T0333 173 :SFPPS 1vcoA 240 :NVRPG T0333 191 :WVPYGG 1vcoA 245 :HVFSSP T0333 205 :PPVP 1vcoA 251 :TVEH T0333 209 :ARPE 1vcoA 297 :PERT T0333 213 :VAITMGTI 1vcoA 302 :KIAIAGKY T0333 226 :GIGAVEPIIAAAGEV 1vcoA 315 :AYLSLLEALRHAGIK T0333 241 :DADFVLA 1vcoA 331 :RARVEVK T0333 250 :DLDISP 1vcoA 338 :WVDAES T0333 270 :PLHTLLRTCTAVVHHG 1vcoA 348 :DLEEAFRDVSGILVPG T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 1vcoA 373 :KVRAAQYARERKIPYLGICLGL T0333 309 :QF 1vcoA 395 :QI T0333 313 :TAREAVSRRG 1vcoA 397 :AVIEFARNVA Number of specific fragments extracted= 26 number of extra gaps= 1 total=2376 Number of alignments=119 # 1vcoA read from 1vcoA/merged-good-all-a2m # found chain 1vcoA in template set Warning: unaligning (T0333)L251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)D314 Warning: unaligning (T0333)P255 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vcoA)D314 Warning: unaligning (T0333)L274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vcoA)A347 T0333 1 :MLFVSSPG 1vcoA 14 :YVFITGGV T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIA 1vcoA 25 :LGKGILTSSLGALLRARGYRVTAI T0333 47 :VVDVAPDYSAVKVF 1vcoA 49 :KIDPYVNVDAGTMR T0333 61 :EQVAKDNPRFAETVATRP 1vcoA 109 :IQKERRGEYLSQTVQVIP T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYEQGAT 1vcoA 127 :HITDEIKERIRKVAEEQKAEIVVVEVGGT T0333 120 :VGLLAADRA 1vcoA 163 :PFLEAIRQF T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLT 1vcoA 178 :GNTLYLHLTLVPYLETSEEFKTKPTQ T0333 155 :DLMDKHQVSLPEP 1vcoA 226 :PVPEEVRRKVALF T0333 182 :AEPEGWFMRWVPYGGGA 1vcoA 239 :TNVRPGHVFSSPTVEHL T0333 223 :QAFGIGAVEPIIAAAGEVD 1vcoA 280 :VIPNLSFWQEAVRVLKHPE T0333 242 :ADFVLALGD 1vcoA 301 :VKIAIAGKY T0333 256 :L 1vcoA 315 :A T0333 264 :RA 1vcoA 333 :RV T0333 266 :VGWTPLHT 1vcoA 336 :VKWVDAES T0333 275 :LRTCTAVVHHGG 1vcoA 353 :FRDVSGILVPGG T0333 287 :GGTVMTAIDAGIPQLLA 1vcoA 374 :VRAAQYARERKIPYLGI Number of specific fragments extracted= 16 number of extra gaps= 0 total=2392 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rrvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333/1rrvA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0333/1rrvA/merged-good-all-a2m.gz for input Trying 1rrvA/merged-good-all-a2m Error: Couldn't open file 1rrvA/merged-good-all-a2m or 1rrvA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v71A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v71A expands to /projects/compbio/data/pdb/1v71.pdb.gz 1v71A:# T0333 read from 1v71A/merged-good-all-a2m # 1v71A read from 1v71A/merged-good-all-a2m # adding 1v71A to template set # found chain 1v71A in template set T0333 3 :FVSSPGIGHLFPLIQLAWG 1v71A 77 :VLTFSSGNHAQAIALSAKI T0333 25 :AGHDVLIAV 1v71A 96 :LGIPAKIIM T0333 34 :AEH 1v71A 106 :LDA T0333 37 :ADRAAAAGLEVVDVAPD 1v71A 113 :VAATKGYGGQVIMYDRY T0333 81 :DLEEWGVQIAAV 1v71A 132 :DREKMAKEISER T0333 94 :RPLVDG 1v71A 155 :PHVLAG T0333 100 :TMALVDDY 1v71A 165 :AKELFEEV T0333 108 :RPDLVVYEQGA 1v71A 174 :PLDALFVCLGG T0333 119 :TVGLLAADRA 1v71A 189 :SGSALAARHF T0333 129 :GVPAVQRNQSAW 1v71A 201 :NCEVYGVEPEAG T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 1v71A 238 :QTQHLGNYTFSIIKEKVDDILTVS T0333 175 :PPSLL 1v71A 262 :DEELI T0333 181 :EAEPE 1v71A 273 :AARMK T0333 190 :RWVPYGGGAV 1v71A 278 :IVVEPTGCLS T0333 200 :LGDRLPP 1v71A 294 :MKEKLKN T0333 211 :PEVAITMGT 1v71A 301 :KRIGIIISG T0333 226 :GIGAVEPII 1v71A 313 :DIERYAHFL Number of specific fragments extracted= 17 number of extra gaps= 0 total=2409 Number of alignments=121 # 1v71A read from 1v71A/merged-good-all-a2m # found chain 1v71A in template set T0333 4 :VSSPGI 1v71A 78 :LTFSSG T0333 13 :FPLIQLAWGFRTAGHDVLIAVAE 1v71A 84 :NHAQAIALSAKILGIPAKIIMPL T0333 36 :HA 1v71A 108 :AP T0333 38 :DRAAAAGLEVVDVA 1v71A 114 :AATKGYGGQVIMYD T0333 52 :PDYSAVKVFEQVAKDNPRFAETVATRP 1v71A 129 :YKDDREKMAKEISEREGLTIIPPYDHP T0333 90 :AAVNRPLV 1v71A 156 :HVLAGQGT T0333 99 :GTMALVDDYR 1v71A 164 :AAKELFEEVG T0333 109 :PDLVVY 1v71A 175 :LDALFV T0333 115 :EQGA 1v71A 183 :GGGG T0333 119 :TVGLLAADRA 1v71A 189 :SGSALAARHF T0333 129 :GVPAVQRNQSA 1v71A 201 :NCEVYGVEPEA T0333 140 :WRTRGMHRSIASFLTDLMDKHQVSLP 1v71A 237 :AQTQHLGNYTFSIIKEKVDDILTVSD T0333 228 :GAVEPIIAAAGEV 1v71A 263 :EELIDCLKFYAAR T0333 241 :DADF 1v71A 277 :KIVV T0333 250 :DLDI 1v71A 281 :EPTG T0333 254 :SPLGTL 1v71A 296 :EKLKNK T0333 279 :TAVVHHGGGGT 1v71A 302 :RIGIIISGGNV T0333 343 :DESLRTAA 1v71A 313 :DIERYAHF Number of specific fragments extracted= 18 number of extra gaps= 0 total=2427 Number of alignments=122 # 1v71A read from 1v71A/merged-good-all-a2m # found chain 1v71A in template set T0333 3 :FVSSPGI 1v71A 77 :VLTFSSG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1v71A 84 :NHAQAIALSAKILGIPAKIIM T0333 34 :A 1v71A 106 :L T0333 35 :EHADRAAAAGLEVVDVAPDYSAVKVF 1v71A 111 :AKVAATKGYGGQVIMYDRYKDDREKM T0333 61 :EQVAKDNPRFAETVATR 1v71A 138 :KEISEREGLTIIPPYDH T0333 83 :EEWGVQIAAVNRPLVDGT 1v71A 155 :PHVLAGQGTAAKELFEEV T0333 108 :RPDLVVYEQGAT 1v71A 174 :PLDALFVCLGGG T0333 120 :VGLLAADRA 1v71A 190 :GSALAARHF T0333 129 :GVPAVQRNQSAWRTRGMHRSIASFLT 1v71A 201 :NCEVYGVEPEAGNDGQQSFRKGSIVH T0333 202 :DRLPPVPARPEVAITMGTIEL 1v71A 292 :RAMKEKLKNKRIGIIISGGNV T0333 226 :GIGAVEPII 1v71A 313 :DIERYAHFL Number of specific fragments extracted= 11 number of extra gaps= 0 total=2438 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oi7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1oi7A/merged-good-all-a2m # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0333)G195 because of BadResidue code BAD_PEPTIDE in next template residue (1oi7A)G121 Warning: unaligning (T0333)G196 because of BadResidue code BAD_PEPTIDE at template residue (1oi7A)G121 Warning: unaligning (T0333)R307 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1oi7A)V255 T0333 2 :LFVSSPGI 1oi7A 10 :VLVQGITG T0333 14 :PLIQLAWGFRTAGHDVLIAV 1oi7A 19 :EGQFHTKQMLTYGTKIVAGV T0333 34 :AEHADR 1oi7A 40 :PGKGGM T0333 41 :AAAGLEVVD 1oi7A 46 :EVLGVPVYD T0333 81 :DLE 1oi7A 55 :TVK T0333 99 :GT 1oi7A 58 :EA T0333 104 :VDDYRPDLVVYEQGAT 1oi7A 60 :VAHHEVDASIIFVPAP T0333 120 :VGLLAAD 1oi7A 80 :AALEAAH T0333 128 :AGVPAVQRNQS 1oi7A 87 :AGIPLIVLITE T0333 144 :GMHR 1oi7A 98 :GIPT T0333 148 :SIASFLTDLMDKHQ 1oi7A 103 :DMVRAVEEIKALGS T0333 192 :VPY 1oi7A 117 :RLI T0333 197 :GAV 1oi7A 122 :NCP T0333 200 :LGDRL 1oi7A 138 :PGHVF T0333 209 :ARPEVAITMG 1oi7A 143 :KRGRVGIISR T0333 226 :GIGAVEPIIAAAGEVDADF 1oi7A 153 :SGTLTYEAAAALSQAGLGT T0333 245 :VLALGDLDI 1oi7A 174 :TVGIGGDPV T0333 256 :L 1oi7A 183 :I T0333 268 :WTPLHTLLRT 1oi7A 184 :GTTFKDLLPL T0333 278 :CTAVVHHG 1oi7A 200 :TEAVVLIG T0333 286 :GGGTVMTAIDA 1oi7A 210 :GGSDEEEAAAW T0333 297 :GIPQLLAPDP 1oi7A 226 :KKPVVGFIGG T0333 327 :STS 1oi7A 256 :GTP T0333 344 :ESLRTAAREV 1oi7A 259 :ESKLRAFAEA T0333 360 :LP 1oi7A 273 :AD T0333 363 :PAETVRRIVERI 1oi7A 275 :TIDEIVELVKKA Number of specific fragments extracted= 26 number of extra gaps= 1 total=2464 Number of alignments=124 # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0333)V162 because of BadResidue code BAD_PEPTIDE in next template residue (1oi7A)G121 Warning: unaligning (T0333)S163 because of BadResidue code BAD_PEPTIDE at template residue (1oi7A)G121 Warning: unaligning (T0333)R307 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1oi7A)V255 Warning: unaligning (T0333)S329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1oi7A)V255 T0333 11 :HLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVD 1oi7A 16 :TGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYD T0333 99 :GTMALVDDYRPDLVVYEQGA 1oi7A 55 :TVKEAVAHHEVDASIIFVPA T0333 119 :TVGLLAADRAGVPAVQRNQSA 1oi7A 78 :ADAALEAAHAGIPLIVLITEG T0333 141 :RTRGMHRSIASFLTDLMDKHQ 1oi7A 99 :IPTLDMVRAVEEIKALGSRLI T0333 164 :LPE 1oi7A 122 :NCP T0333 191 :WVP 1oi7A 133 :KIG T0333 198 :AVLGDRLP 1oi7A 136 :IMPGHVFK T0333 211 :PEVAITMGTIE 1oi7A 144 :RGRVGIISRSG T0333 228 :GAVEPIIAAAGEV 1oi7A 155 :TLTYEAAAALSQA T0333 241 :DADFVLALGDLDI 1oi7A 170 :GTTTTVGIGGDPV T0333 271 :LHTLLR 1oi7A 187 :FKDLLP T0333 277 :TCTAVVHHG 1oi7A 199 :ETEAVVLIG T0333 286 :GGGTVMTAIDA 1oi7A 210 :GGSDEEEAAAW T0333 297 :GIPQLLAPDP 1oi7A 226 :KKPVVGFIGG T0333 330 :DKVD 1oi7A 257 :TPES T0333 334 :ADLLRRL 1oi7A 262 :LRAFAEA T0333 361 :PTPAETVRRIVERI 1oi7A 274 :DTIDEIVELVKKAL Number of specific fragments extracted= 17 number of extra gaps= 1 total=2481 Number of alignments=125 # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0333)P193 because of BadResidue code BAD_PEPTIDE in next template residue (1oi7A)G121 Warning: unaligning (T0333)Y194 because of BadResidue code BAD_PEPTIDE at template residue (1oi7A)G121 Warning: unaligning (T0333)S327 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1oi7A)V255 T0333 2 :LFVSSPGI 1oi7A 10 :VLVQGITG T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1oi7A 18 :REGQFHTKQMLTYGTKIVAGV T0333 34 :AEHAD 1oi7A 40 :PGKGG T0333 43 :AGLEVV 1oi7A 48 :LGVPVY T0333 52 :PDY 1oi7A 54 :DTV T0333 101 :MALVDDYRPDLVVYEQGAT 1oi7A 57 :KEAVAHHEVDASIIFVPAP T0333 120 :VGLLAA 1oi7A 80 :AALEAA T0333 127 :RAGVPAVQRNQSAWRTRGMHRSIASFLT 1oi7A 86 :HAGIPLIVLITEGIPTLDMVRAVEEIKA T0333 187 :WFMRWV 1oi7A 114 :LGSRLI T0333 195 :GGGA 1oi7A 122 :NCPG T0333 199 :VLGDR 1oi7A 137 :MPGHV T0333 208 :PARPEVAITM 1oi7A 142 :FKRGRVGIIS T0333 225 :FGIGAVEPIIAAAGEVDADF 1oi7A 152 :RSGTLTYEAAAALSQAGLGT T0333 245 :VLALGDLDI 1oi7A 174 :TVGIGGDPV T0333 256 :L 1oi7A 183 :I T0333 268 :WTPLHTLL 1oi7A 184 :GTTFKDLL T0333 276 :RTCTAVVH 1oi7A 198 :PETEAVVL T0333 303 :AP 1oi7A 206 :IG T0333 305 :DPRDQFQHTAREAV 1oi7A 210 :GGSDEEEAAAWVKD T0333 323 :I 1oi7A 229 :V T0333 328 :TSDKVDADLLRRL 1oi7A 256 :GTPESKLRAFAEA T0333 360 :LPTPAETVRRIVERI 1oi7A 273 :ADTIDEIVELVKKAL Number of specific fragments extracted= 22 number of extra gaps= 1 total=2503 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vgvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vgvA expands to /projects/compbio/data/pdb/1vgv.pdb.gz 1vgvA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1vgvA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1vgvA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1vgvA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1vgvA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1vgvA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0333 read from 1vgvA/merged-good-all-a2m # 1vgvA read from 1vgvA/merged-good-all-a2m # adding 1vgvA to template set # found chain 1vgvA in template set T0333 1 :M 1vgvA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1vgvA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAV 1vgvA 29 :FEAKVCV T0333 34 :AEHADRAAAA 1vgvA 37 :AQHREMLDQV T0333 44 :GL 1vgvA 51 :SI T0333 55 :SAVKVFEQ 1vgvA 53 :VPDYDLNI T0333 76 :TRPAIDLEEWGVQIAAVNRP 1vgvA 61 :MQPGQGLTEITCRILEGLKP T0333 103 :LVDDYRPDLVVYEQGA 1vgvA 81 :ILAEFKPDVVLVHGDT T0333 119 :TVGLLAADRAGVPAVQRNQSAW 1vgvA 100 :LATSLAAFYQRIPVGHVEAGLR T0333 141 :RTRGMHRSIASFLTDLMD 1vgvA 123 :GDLYSPWPEEANRTLTGH T0333 166 :EPVATIESFPPSLLLEAEPE 1vgvA 141 :LAMYHFSPTETSRQNLLREN T0333 187 :WFMRWVPYGGGAV 1vgvA 161 :VADSRIFITGNTV T0333 200 :LGDRLPP 1vgvA 197 :NYPFIDP T0333 209 :ARPEVAITMGTIELQA 1vgvA 204 :DKKMILVTGHRRESFG T0333 225 :FGIGAVEPIIAAAGEVD 1vgvA 221 :GFEEICHALADIATTHQ T0333 242 :ADFVLALG 1vgvA 239 :IQIVYPVH T0333 251 :L 1vgvA 248 :N T0333 254 :SPLGT 1vgvA 249 :PNVRE T0333 259 :LPRNVRAVGWT 1vgvA 261 :HVKNVILIDPQ T0333 270 :PLHTLLRTCTAVVHHGG 1vgvA 275 :PFVWLMNHAWLILTDSG T0333 288 :GTVMTAIDAGIPQLLAPDPRDQFQ 1vgvA 292 :GIQEEAPSLGKPVLVMRDTTERPE T0333 318 :VSRRGIG 1vgvA 316 :AVTAGTV T0333 325 :LV 1vgvA 324 :LV T0333 327 :STSDKV 1vgvA 327 :TDKQRI T0333 334 :ADLLRRLIGDESLRTAAR 1vgvA 333 :VEEVTRLLKDENEYQAMS T0333 358 :VALP 1vgvA 357 :GDGQ T0333 363 :PAETVRRIVERI 1vgvA 361 :ACSRILEALKNN Number of specific fragments extracted= 27 number of extra gaps= 0 total=2530 Number of alignments=127 # 1vgvA read from 1vgvA/merged-good-all-a2m # found chain 1vgvA in template set T0333 1 :M 1vgvA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1vgvA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAVAE 1vgvA 29 :FEAKVCVTA T0333 52 :PDYSAVKVFEQV 1vgvA 38 :QHREMLDQVLKL T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIAA 1vgvA 50 :FSIVPDYDLNIMQPGQGLTEITCRILE T0333 99 :GTMALVDDYRPDLVVYE 1vgvA 77 :GLKPILAEFKPDVVLVH T0333 117 :GA 1vgvA 95 :DT T0333 119 :TVGLLAADRAGVPAVQRNQSA 1vgvA 100 :LATSLAAFYQRIPVGHVEAGL T0333 140 :WRTRGMHRSIASF 1vgvA 124 :DLYSPWPEEANRT T0333 153 :LTDLMDKHQVSLPEPVATIE 1vgvA 138 :TGHLAMYHFSPTETSRQNLL T0333 173 :SFPPS 1vgvA 160 :NVADS T0333 191 :WVPYGGGAV 1vgvA 165 :RIFITGNTV T0333 200 :LGDRLPPVPARPEVAITMG 1vgvA 194 :LAANYPFIDPDKKMILVTG T0333 219 :TIELQAFGIGAVEPIIAAAGEV 1vgvA 214 :RRESFGRGFEEICHALADIATT T0333 241 :DADFVLALG 1vgvA 238 :DIQIVYPVH T0333 250 :DLDI 1vgvA 248 :NPNV T0333 254 :SPLGTL 1vgvA 257 :RILGHV T0333 261 :RNVRAVGWTP 1vgvA 263 :KNVILIDPQE T0333 271 :LHTLLRTCTAVVHHGGGG 1vgvA 276 :FVWLMNHAWLILTDSGGI T0333 290 :VMTAIDAGIPQLLAPDPRDQF 1vgvA 294 :QEEAPSLGKPVLVMRDTTERP T0333 313 :T 1vgvA 315 :E T0333 318 :VSRRGIGLVSTSDKVD 1vgvA 316 :AVTAGTVRLVGTDKQR T0333 334 :ADLLRRLIGDESLRTAAR 1vgvA 333 :VEEVTRLLKDENEYQAMS T0333 365 :ETVRRIVERIS 1vgvA 360 :QACSRILEALK Number of specific fragments extracted= 24 number of extra gaps= 0 total=2554 Number of alignments=128 # 1vgvA read from 1vgvA/merged-good-all-a2m # found chain 1vgvA in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1vgvA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAV 1vgvA 31 :AKVCVTA T0333 34 :AEHADRAAA 1vgvA 40 :REMLDQVLK T0333 43 :AGLEVVDVAPDYSAVK 1vgvA 50 :FSIVPDYDLNIMQPGQ T0333 78 :PA 1vgvA 66 :GL T0333 83 :EEWGV 1vgvA 68 :TEITC T0333 95 :PLVDGTMALVDDYRPDLVVYEQGATVGL 1vgvA 73 :RILEGLKPILAEFKPDVVLVHGDTTTTL T0333 123 :LAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1vgvA 104 :LAAFYQRIPVGHVEAGLRTGDLYSPWPEEANR T0333 184 :PEGWFMRWVPYGGGA 1vgvA 161 :VADSRIFITGNTVID T0333 199 :VLGDRL 1vgvA 193 :ELAANY T0333 205 :PPVPARPEVAITMGTIELQ 1vgvA 200 :FIDPDKKMILVTGHRRESF T0333 226 :G 1vgvA 219 :G T0333 228 :GAVEPIIAAAGEV 1vgvA 220 :RGFEEICHALADI T0333 241 :DADFVLALGD 1vgvA 238 :DIQIVYPVHL T0333 251 :LDISPLGTLPRNVRAVGWTPLHTLL 1vgvA 253 :EPVNRILGHVKNVILIDPQEYLPFV T0333 276 :RTCTAVVHHGG 1vgvA 281 :NHAWLILTDSG T0333 293 :AIDAGIPQLLAPDPRDQF 1vgvA 297 :APSLGKPVLVMRDTTERP T0333 315 :REAVSRRGIGLV 1vgvA 315 :EAVTAGTVRLVG T0333 329 :SDKVDADLLRRLIGDESL 1vgvA 328 :DKQRIVEEVTRLLKDENE T0333 354 :REEMVALPTPA 1vgvA 346 :YQAMSRAHNPY T0333 365 :ETVRRIVERIS 1vgvA 360 :QACSRILEALK Number of specific fragments extracted= 21 number of extra gaps= 0 total=2575 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1keeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1keeA expands to /projects/compbio/data/pdb/1kee.pdb.gz 1keeA:Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 4284, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 4286, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 4288, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 4290, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 7611, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 7613, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 7615, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 7617, because occupancy 0.500 <= existing 0.500 in 1keeA Skipped atom 7619, because occupancy 0.500 <= existing 0.500 in 1keeA # T0333 read from 1keeA/merged-good-all-a2m # 1keeA read from 1keeA/merged-good-all-a2m # adding 1keeA to template set # found chain 1keeA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeA)D558 T0333 2 :LFVSSPGI 1keeA 10 :ILILGAGP T0333 10 :GHL 1keeA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeA 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHA 1keeA 51 :PATI T0333 39 :RAAAAGLEVVDVAP 1keeA 55 :MTDPEMADATYIEP T0333 94 :RPL 1keeA 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1keeA 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeA 112 :GVT T0333 136 :NQSAW 1keeA 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1keeA 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1keeA 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1keeA 536 :FATDTAYMYSTYEEEC T0333 204 :LPPV 1keeA 553 :ANPS T0333 210 :RPEVAITMGT 1keeA 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLAL 1keeA 572 :IGQGIEFDYCCVHASLALREDGYETIMVN T0333 277 :T 1keeA 611 :D T0333 278 :CTAVVHHG 1keeA 613 :SDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1keeA 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1keeA 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1keeA 647 :PLKLARA T0333 318 :VSRRGIG 1keeA 654 :LEAAGVP T0333 325 :LVST 1keeA 662 :IGTS T0333 334 :ADLLRRLIG 1keeA 666 :PDAIDRAED T0333 347 :RTAAREVREE 1keeA 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1keeA 697 :AIEMAVEKAKEI Number of specific fragments extracted= 25 number of extra gaps= 1 total=2600 Number of alignments=130 # 1keeA read from 1keeA/merged-good-all-a2m # found chain 1keeA in template set T0333 1 :M 1keeA 1 :M T0333 2 :LFVSSPGI 1keeA 12 :ILGAGPIV T0333 10 :GHL 1keeA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1keeA 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1keeA 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeA 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeA 112 :GVT T0333 135 :RNQSA 1keeA 115 :MIGAT T0333 140 :WRTRGMHRSIASFLT 1keeA 800 :TLSQEIQDVMRQQVQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=2609 Number of alignments=131 # 1keeA read from 1keeA/merged-good-all-a2m # found chain 1keeA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeA)D558 T0333 1 :MLFVSSPGI 1keeA 10 :ILILGAGPI T0333 10 :GH 1keeA 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1keeA 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEH 1keeA 51 :PAT T0333 39 :RAAAAG 1keeA 54 :IMTDPE T0333 45 :LEVVDVAPDY 1keeA 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeA 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1keeA 112 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1keeA 114 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1keeA 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1keeA 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1keeA 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1keeA 587 :LALREDGYETIMVNCN T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1keeA 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1keeA 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1keeA 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1keeA 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1keeA 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1keeA 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 19 number of extra gaps= 1 total=2628 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1keeC/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1keeC expands to /projects/compbio/data/pdb/1kee.pdb.gz 1keeC:Skipped atom 11370, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11372, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11374, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11376, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11378, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11380, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 11382, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 18754, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 18756, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 18758, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 18760, because occupancy 0.500 <= existing 0.500 in 1keeC Skipped atom 18762, because occupancy 0.500 <= existing 0.500 in 1keeC # T0333 read from 1keeC/merged-good-all-a2m # 1keeC read from 1keeC/merged-good-all-a2m # adding 1keeC to template set # found chain 1keeC in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeC)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeC)D558 T0333 2 :LFVSSPGI 1keeC 10 :ILILGAGP T0333 10 :GHL 1keeC 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeC 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1keeC 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1keeC 61 :ADATYIEP T0333 93 :NRPL 1keeC 70 :HWEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1keeC 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeC 112 :GVT T0333 135 :RNQSA 1keeC 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1keeC 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1keeC 521 :DLHPVYKRVDTCAAE T0333 199 :V 1keeC 536 :F T0333 200 :LGDR 1keeC 547 :YEEE T0333 204 :LPPV 1keeC 553 :ANPS T0333 210 :RPEVAITMGT 1keeC 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1keeC 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1keeC 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1keeC 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1keeC 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1keeC 647 :PLKLARA T0333 318 :VSRRGIG 1keeC 654 :LEAAGVP T0333 325 :LVST 1keeC 662 :IGTS T0333 334 :ADLLRRLIG 1keeC 666 :PDAIDRAED T0333 347 :RTAAREVREE 1keeC 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1keeC 697 :AIEMAVEKAKEI Number of specific fragments extracted= 25 number of extra gaps= 1 total=2653 Number of alignments=133 # 1keeC read from 1keeC/merged-good-all-a2m # found chain 1keeC in template set T0333 2 :LF 1keeC 12 :IL T0333 6 :SPGI 1keeC 16 :GPIV T0333 10 :GHL 1keeC 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1keeC 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYS 1keeC 61 :ADATYIEPIHW T0333 98 :DGTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeC 72 :EVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeC 112 :GVT T0333 135 :RNQSA 1keeC 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1keeC 800 :TLSQEIQDVMRQQVQKLA T0333 168 :VATI 1keeC 874 :LAEQ T0333 173 :SFPPSLLL 1keeC 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1keeC 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1keeC 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVL 1keeC 950 :REGDKERVVDLAAKLLKQGFELDA T0333 250 :D 1keeC 985 :G T0333 261 :RNVRAVGWT 1keeC 986 :INPRLVNKV T0333 271 :LHTLLR 1keeC 1001 :IQDRIK T0333 277 :TCTAVVHHG 1keeC 1009 :EYTYIINTT T0333 286 :GGGT 1keeC 1019 :GRRA T0333 308 :DQF 1keeC 1025 :DSR T0333 313 :TAREAVSRRGIGLV 1keeC 1028 :VIRRSALQYKVHYD Number of specific fragments extracted= 21 number of extra gaps= 0 total=2674 Number of alignments=134 # 1keeC read from 1keeC/merged-good-all-a2m # found chain 1keeC in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeC)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeC)D558 T0333 1 :MLFVSSPGI 1keeC 10 :ILILGAGPI T0333 10 :GH 1keeC 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1keeC 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1keeC 51 :PATI T0333 40 :A 1keeC 55 :M T0333 45 :LEVVDVAPDY 1keeC 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeC 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1keeC 112 :GV T0333 137 :QSAWRTRGMHRSIAS 1keeC 114 :TMIGATADAIDKAED T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1keeC 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1keeC 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIA 1keeC 559 :REKIMVLGGGPNRIGQGIEFDYCCVH T0333 236 :AAGEVDADFVLALGD 1keeC 588 :ALREDGYETIMVNCN T0333 251 :LDISPL 1keeC 608 :TDYDTS T0333 264 :RAVGWTPLHTLL 1keeC 616 :LYFEPVTLEDVL T0333 276 :RTCTAVVHHGGGGTV 1keeC 633 :EKPKGVIVQYGGQTP T0333 310 :FQHTAREAVSRRGIGL 1keeC 648 :LKLARALEAAGVPVIG T0333 329 :SDK 1keeC 665 :SPD T0333 336 :LLRRLIGDESLRTAAREV 1keeC 668 :AIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1keeC 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=2694 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1keeE/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1keeE expands to /projects/compbio/data/pdb/1kee.pdb.gz 1keeE:Skipped atom 23343, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23345, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23347, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23349, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23351, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23705, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23707, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23709, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23711, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 23713, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 27244, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 27246, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 27248, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 27250, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 27252, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29428, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29430, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29432, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29434, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29436, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29527, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29529, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29531, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29533, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29535, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29760, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29762, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29764, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29766, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29768, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29770, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29772, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29820, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29822, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29824, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29826, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29828, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29830, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29832, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29867, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29869, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29871, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29873, because occupancy 0.500 <= existing 0.500 in 1keeE Skipped atom 29875, because occupancy 0.500 <= existing 0.500 in 1keeE # T0333 read from 1keeE/merged-good-all-a2m # 1keeE read from 1keeE/merged-good-all-a2m # adding 1keeE to template set # found chain 1keeE in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeE)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeE)D558 T0333 2 :LFVSSPGI 1keeE 10 :ILILGAGP T0333 10 :GHL 1keeE 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeE 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1keeE 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1keeE 61 :ADATYIEP T0333 94 :RPL 1keeE 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1keeE 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeE 112 :GVT T0333 135 :RNQSAW 1keeE 115 :MIGATA T0333 141 :RTRGMHRSIASFLTDL 1keeE 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1keeE 521 :DLHPVYKRVDTCAAE T0333 183 :EPE 1keeE 536 :FAT T0333 187 :WFMRWVPYGGGAV 1keeE 539 :DTAYMYSTYEEEC T0333 203 :RLPPV 1keeE 552 :EANPS T0333 210 :RPEVAITMG 1keeE 559 :REKIMVLGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1keeE 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1keeE 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1keeE 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1keeE 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1keeE 647 :PLKLARA T0333 318 :VSRRGIG 1keeE 654 :LEAAGVP T0333 325 :LVST 1keeE 662 :IGTS T0333 334 :ADLLRRLIG 1keeE 666 :PDAIDRAED T0333 347 :RTAAREVREE 1keeE 675 :RERFQHAVER T0333 362 :TPAETVRRIVERI 1keeE 696 :TAIEMAVEKAKEI Number of specific fragments extracted= 25 number of extra gaps= 1 total=2719 Number of alignments=136 # 1keeE read from 1keeE/merged-good-all-a2m # found chain 1keeE in template set T0333 1 :M 1keeE 1 :M T0333 2 :LFVSSPGI 1keeE 12 :ILGAGPIV T0333 10 :GHL 1keeE 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1keeE 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1keeE 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeE 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeE 112 :GVT T0333 135 :RNQSA 1keeE 115 :MIGAT T0333 362 :TPAETVRRIVER 1keeE 697 :AIEMAVEKAKEI Number of specific fragments extracted= 9 number of extra gaps= 0 total=2728 Number of alignments=137 # 1keeE read from 1keeE/merged-good-all-a2m # found chain 1keeE in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeE)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeE)D558 T0333 1 :MLFVSSPGI 1keeE 10 :ILILGAGPI T0333 10 :GHL 1keeE 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeE 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHA 1keeE 51 :PATI T0333 45 :LEVVDVAPDY 1keeE 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeE 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1keeE 112 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1keeE 114 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1keeE 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1keeE 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIA 1keeE 559 :REKIMVLGGGPNRIGQGIEFDYCCVH T0333 236 :AAGEVDADFVLALGD 1keeE 588 :ALREDGYETIMVNCN T0333 251 :LDISPLGTLPR 1keeE 604 :ETVSTDYDTSD T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1keeE 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1keeE 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1keeE 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SDK 1keeE 665 :SPD T0333 336 :LLRRLIGDESLRTAAREV 1keeE 668 :AIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1keeE 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 19 number of extra gaps= 1 total=2747 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1keeG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1keeG expands to /projects/compbio/data/pdb/1kee.pdb.gz 1keeG:# T0333 read from 1keeG/merged-good-all-a2m # 1keeG read from 1keeG/merged-good-all-a2m # adding 1keeG to template set # found chain 1keeG in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeG)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeG)D558 T0333 2 :LFVSSPGI 1keeG 10 :ILILGAGP T0333 10 :GHL 1keeG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeG 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1keeG 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1keeG 61 :ADATYIEP T0333 94 :RPL 1keeG 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1keeG 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeG 112 :GVT T0333 136 :NQSAW 1keeG 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1keeG 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1keeG 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1keeG 536 :FATDTAYMYSTYEEEC T0333 203 :RLPPV 1keeG 552 :EANPS T0333 210 :RPEVAITMGT 1keeG 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1keeG 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1keeG 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1keeG 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1keeG 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1keeG 647 :PLKLARA T0333 318 :VSRRGIG 1keeG 654 :LEAAGVP T0333 325 :LVST 1keeG 662 :IGTS T0333 334 :ADLLRRLIG 1keeG 666 :PDAIDRAED T0333 347 :RTAAREVREE 1keeG 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1keeG 697 :AIEMAVEKAKEI Number of specific fragments extracted= 24 number of extra gaps= 1 total=2771 Number of alignments=139 # 1keeG read from 1keeG/merged-good-all-a2m # found chain 1keeG in template set Warning: unaligning (T0333)L271 because of BadResidue code BAD_PEPTIDE in next template residue (1keeG)Q1002 Warning: unaligning (T0333)H272 because of BadResidue code BAD_PEPTIDE at template residue (1keeG)Q1002 T0333 2 :LFVSSPGI 1keeG 12 :ILGAGPIV T0333 10 :GHL 1keeG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1keeG 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYSA 1keeG 61 :ADATYIEPIHWE T0333 99 :GTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeG 73 :VVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1keeG 112 :GVT T0333 135 :RNQSA 1keeG 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1keeG 800 :TLSQEIQDVMRQQVQKLA T0333 172 :E 1keeG 875 :A T0333 173 :SFPPSLLL 1keeG 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1keeG 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1keeG 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVL 1keeG 950 :REGDKERVVDLAAKLLKQGFELDA T0333 261 :RNVRAVGWT 1keeG 986 :INPRLVNKV T0333 270 :P 1keeG 997 :G T0333 273 :TLLR 1keeG 1003 :DRIK T0333 277 :TCTAVVHHG 1keeG 1009 :EYTYIINTT T0333 286 :GGGT 1keeG 1019 :GRRA T0333 308 :DQF 1keeG 1025 :DSR T0333 313 :TAREAVSRRGIGLV 1keeG 1028 :VIRRSALQYKVHYD Number of specific fragments extracted= 20 number of extra gaps= 1 total=2791 Number of alignments=140 # 1keeG read from 1keeG/merged-good-all-a2m # found chain 1keeG in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1keeG)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1keeG)D558 T0333 1 :MLFVSSPGI 1keeG 10 :ILILGAGPI T0333 10 :GHL 1keeG 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1keeG 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAA 1keeG 51 :PATIMTDPE T0333 45 :LEVVDVAPDY 1keeG 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1keeG 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1keeG 112 :GV T0333 136 :NQ 1keeG 114 :TM T0333 139 :AWRTRGMHRSIASFLT 1keeG 116 :IGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1keeG 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1keeG 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1keeG 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1keeG 587 :LALREDGYETIMVNCN T0333 251 :LDIS 1keeG 608 :TDYD T0333 277 :TC 1keeG 612 :TS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1keeG 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1keeG 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1keeG 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1keeG 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1keeG 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1keeG 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 21 number of extra gaps= 1 total=2812 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ihuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ihuA expands to /projects/compbio/data/pdb/1ihu.pdb.gz 1ihuA:# T0333 read from 1ihuA/merged-good-all-a2m # 1ihuA read from 1ihuA/merged-good-all-a2m # adding 1ihuA to template set # found chain 1ihuA in template set Warning: unaligning (T0333)E185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)Q308 Warning: unaligning (T0333)G197 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihuA)Q308 Warning: unaligning (T0333)D252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)N378 Warning: unaligning (T0333)C278 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)T480 T0333 2 :LFVSS 1ihuA 11 :LFFTG T0333 7 :PGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAA 1ihuA 17 :GGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQV T0333 44 :GLEVVDVAP 1ihuA 59 :GNTIQAIAS T0333 53 :DYS 1ihuA 70 :GLS T0333 56 :AVKVFEQVAKDNP 1ihuA 150 :IRLLQLPGAWSSF T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPV 1ihuA 244 :ANDTLAAAIWEREQEALANLPADLAGLP T0333 169 :ATIESFPPSLL 1ihuA 273 :DTLFLQPVNMV T0333 180 :LEAEP 1ihuA 291 :LLSTQ T0333 198 :AV 1ihuA 309 :RP T0333 200 :LGD 1ihuA 322 :IAR T0333 209 :ARPEVAITMGTIELQ 1ihuA 325 :NEHGLIMLMGKGGVG T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDL 1ihuA 340 :KTTMAAAIAVRLADMGFDVHLTTSDP T0333 253 :ISPLG 1ihuA 436 :IREAG T0333 261 :RNVRAVGWTP 1ihuA 441 :KRFVVMDTAP T0333 271 :LHTLLRT 1ihuA 454 :TLLLLDA T0333 297 :GIPQLLAPDP 1ihuA 490 :RTKVLLVTLP T0333 308 :DQFQHTAR 1ihuA 506 :EAANLQAD T0333 318 :VSRRGIG 1ihuA 514 :LERAGIH T0333 325 :LV 1ihuA 522 :WG T0333 327 :STSDKV 1ihuA 535 :TRSPLL T0333 338 :RRL 1ihuA 541 :RMR T0333 347 :RTAAREVREEMVA 1ihuA 544 :AQQELPQIESVKR T0333 360 :LPTPAETVRRIV 1ihuA 571 :EPTGIDKLKQLA Number of specific fragments extracted= 23 number of extra gaps= 0 total=2835 Number of alignments=142 # 1ihuA read from 1ihuA/merged-good-all-a2m # found chain 1ihuA in template set Warning: unaligning (T0333)D252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)N378 T0333 2 :LFVSSPGI 1ihuA 11 :LFFTGKGG T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 1ihuA 20 :GKTSISCATAIRLAEQGKRVLLVSTDPASNVGQ T0333 43 :AGLEVVDVAPDYSAVKVFEQVAKDNP 1ihuA 69 :PGLSALEIDPQAAAQQYRARIVDPIK T0333 78 :PAIDLEEWGVQ 1ihuA 95 :GVLPDDVVSSI T0333 89 :IAAVNRPLVD 1ihuA 120 :FDEFTGLLTD T0333 99 :GTMA 1ihuA 131 :SLLT T0333 106 :D 1ihuA 135 :R T0333 109 :PDLVVYEQGA 1ihuA 136 :FDHIIFDTAP T0333 119 :TVGLLAAD 1ihuA 147 :GHTIRLLQ T0333 136 :NQ 1ihuA 155 :LP T0333 140 :WRTRGMHRSIASFLTD 1ihuA 180 :EKQREQYAYAVEALSD T0333 156 :LMDKHQVSLPE 1ihuA 198 :RTRLVLVARLQ T0333 167 :PVATIE 1ihuA 211 :TLQEVA T0333 173 :SFP 1ihuA 226 :GLK T0333 191 :WVPYGGGAVLGDRLPPVP 1ihuA 229 :NQYLVINGVLPKTEAAND T0333 209 :ARPEVAITMGTIE 1ihuA 325 :NEHGLIMLMGKGG T0333 223 :QAF 1ihuA 338 :VGK T0333 228 :GAVEPIIAAAGEV 1ihuA 341 :TTMAAAIAVRLAD T0333 241 :DADFVLALGDL 1ihuA 355 :GFDVHLTTSDP T0333 254 :SPLGTLP 1ihuA 437 :REAGKRF T0333 271 :LHTLLR 1ihuA 481 :PMMLLQ T0333 277 :TCTAVVHHG 1ihuA 490 :RTKVLLVTL T0333 286 :GGGTVMTAIDAGI 1ihuA 507 :AANLQADLERAGI T0333 299 :PQLLAPDPR 1ihuA 523 :GWIINNSLS T0333 308 :DQFQHTAREAVSRRGI 1ihuA 544 :AQQELPQIESVKRQHA T0333 324 :GLVSTS 1ihuA 562 :VALVPV T0333 330 :DKVD 1ihuA 570 :SEPT T0333 334 :ADLLRRLI 1ihuA 575 :IDKLKQLA Number of specific fragments extracted= 28 number of extra gaps= 0 total=2863 Number of alignments=143 # 1ihuA read from 1ihuA/merged-good-all-a2m # found chain 1ihuA in template set Warning: unaligning (T0333)A150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)A170 Warning: unaligning (T0333)A169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)Q308 Warning: unaligning (T0333)E181 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihuA)Q308 Warning: unaligning (T0333)D252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihuA)N378 Warning: unaligning (T0333)R261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihuA)N378 T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1ihuA 11 :LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS T0333 34 :A 1ihuA 46 :P T0333 37 :ADRAAA 1ihuA 47 :ASNVGQ T0333 43 :AGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMA 1ihuA 69 :PGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLT T0333 103 :LVD 1ihuA 132 :LLT T0333 108 :RPDLVVYEQGAT 1ihuA 135 :RFDHIIFDTAPT T0333 120 :VGLLAA 1ihuA 149 :TIRLLQ T0333 130 :V 1ihuA 155 :L T0333 143 :RGMHRSI 1ihuA 156 :PGAWSSF T0333 155 :DLMDKHQVSLPEPV 1ihuA 282 :MVGVSALSRLLSTQ T0333 182 :AEPEGW 1ihuA 309 :RPDIPS T0333 203 :RLPPVPARPEVAITMGTIELQ 1ihuA 319 :VDDIARNEHGLIMLMGKGGVG T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDL 1ihuA 340 :KTTMAAAIAVRLADMGFDVHLTTSDP T0333 262 :NV 1ihuA 379 :NL Number of specific fragments extracted= 14 number of extra gaps= 0 total=2877 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i24A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i24A expands to /projects/compbio/data/pdb/1i24.pdb.gz 1i24A:Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 275, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 277, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 376, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 378, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 380, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 382, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 384, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 386, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 388, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 390, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 392, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 394, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 396, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 398, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 400, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 402, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 404, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 406, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 408, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 410, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 412, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 414, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 416, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 487, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 519, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 521, because occupancy 0.200 <= existing 0.800 in 1i24A Skipped atom 563, because occupancy 0.300 <= existing 0.700 in 1i24A Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 727, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 916, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 917, because occupancy 0.200 <= existing 0.600 in 1i24A Skipped atom 1313, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1317, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1319, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1321, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1323, because occupancy 0.350 <= existing 0.650 in 1i24A Skipped atom 1392, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1394, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1396, because occupancy 0.450 <= existing 0.550 in 1i24A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1648, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 1907, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1909, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1911, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1913, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1915, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 1917, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2153, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2215, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2217, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2219, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2221, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2299, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2301, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2303, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2305, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2307, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2309, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2452, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2721, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2802, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2883, because occupancy 0.400 <= existing 0.600 in 1i24A Skipped atom 2968, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2970, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2972, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2974, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 2976, because occupancy 0.500 <= existing 0.500 in 1i24A Skipped atom 3143, because occupancy 0.400 <= existing 0.600 in 1i24A # T0333 read from 1i24A/merged-good-all-a2m # 1i24A read from 1i24A/merged-good-all-a2m # adding 1i24A to template set # found chain 1i24A in template set T0333 2 :LFVSS 1i24A 4 :VMVIG T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAV 1i24A 9 :GDGYCGWATALHLSKKNYEVCIVD T0333 34 :AEHADRAAAAGLEV 1i24A 34 :LVRRLFDHQLGLES T0333 77 :RPAIDLEEWGVQIAAV 1i24A 49 :TPIASIHDRISRWKAL T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLA 1i24A 79 :FEFLAESFKSFEPDSVVHFGEQRSAPYS T0333 143 :RGMHRSIASF 1i24A 110 :RSRAVYTQHN T0333 153 :LTDLMDKHQVSLPEPVATIESFPPSLL 1i24A 124 :TLNVLFAIKEFGEECHLVKLGTMGEYG T0333 184 :PEGWFMRWVPYGGGAV 1i24A 153 :NIDIEEGYITITHNGR T0333 204 :LPPV 1i24A 174 :YPKQ T0333 218 :GTIELQAFGIGAVEPIIAAAGEVDADFV 1i24A 178 :ASSFYHLSKVHDSHNIAFTCKAWGIRAT T0333 246 :LAL 1i24A 212 :VYG T0333 250 :DLD 1i24A 216 :KTD T0333 253 :ISPLG 1i24A 223 :HEELR T0333 286 :GGGTVMTAIDAGIPQLLA 1i24A 239 :ALNRFCVQAAVGHPLTVY T0333 304 :PDPRDQFQHTAR 1i24A 266 :LDIRDTVQCVEI T0333 318 :VSR 1i24A 278 :AIA T0333 321 :RGIGLV 1i24A 285 :AGEFRV T0333 327 :STSDKV 1i24A 298 :FSVNEL T0333 347 :RTAAREVREE 1i24A 304 :ASLVTKAGSK T0333 357 :MVA 1i24A 342 :LME T0333 360 :LPT 1i24A 349 :PHY T0333 363 :PAETVRRIVERI 1i24A 353 :SDSLLDSLLNFA Number of specific fragments extracted= 22 number of extra gaps= 0 total=2899 Number of alignments=145 # 1i24A read from 1i24A/merged-good-all-a2m # found chain 1i24A in template set T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAVAEHADRA 1i24A 8 :GGDGYCGWATALHLSKKNYEVCIVDNLVRRLF T0333 41 :AAAGLEVVD 1i24A 41 :HQLGLESLT T0333 52 :PDYSAVKVFEQVAKDNPRFAETVATRPAIDL 1i24A 50 :PIASIHDRISRWKALTGKSIELYVGDICDFE T0333 99 :GTMALVDDYRPDLVVY 1i24A 81 :FLAESFKSFEPDSVVH T0333 115 :EQGA 1i24A 99 :EQRS T0333 119 :TVG 1i24A 104 :PYS T0333 123 :L 1i24A 107 :M T0333 141 :RTRGMHRSIASFLTDLM 1i24A 108 :IDRSRAVYTQHNNVIGT T0333 158 :DKHQVSLPEPVATIE 1i24A 139 :HLVKLGTMGEYGTPN T0333 173 :SFPPSLLLEAEPEGWFMRW 1i24A 155 :DIEEGYITITHNGRTDTLP T0333 205 :PPVP 1i24A 174 :YPKQ T0333 217 :MGTIE 1i24A 178 :ASSFY T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLAL 1i24A 183 :HLSKVHDSHNIAFTCKAWGIRATDLN T0333 249 :G 1i24A 214 :G T0333 250 :DLDI 1i24A 216 :KTDE T0333 254 :SPLGTLP 1i24A 224 :EELRNRL T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 1i24A 239 :ALNRFCVQAAVGHPLTVYGKGG T0333 308 :DQFQ 1i24A 270 :DTVQ T0333 313 :TAREAVSR 1i24A 274 :CVEIAIAN T0333 321 :RGIGLVSTS 1i24A 285 :AGEFRVFNQ T0333 347 :RTAAREVREEMVAL 1i24A 300 :VNELASLVTKAGSK T0333 361 :PTPAETVRRIVERI 1i24A 351 :YLSDSLLDSLLNFA Number of specific fragments extracted= 22 number of extra gaps= 0 total=2921 Number of alignments=146 # 1i24A read from 1i24A/merged-good-all-a2m # found chain 1i24A in template set T0333 1 :MLFV 1i24A 4 :VMVI T0333 9 :IGHLFPLIQLAWGFRTAGHDVLIAV 1i24A 8 :GGDGYCGWATALHLSKKNYEVCIVD T0333 34 :AEHADRAAAAGLEVV 1i24A 34 :LVRRLFDHQLGLESL T0333 51 :APDYSAVKVFEQVAKDNPRF 1i24A 49 :TPIASIHDRISRWKALTGKS T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLA 1i24A 79 :FEFLAESFKSFEPDSVVHFGEQRSAPYS T0333 140 :WRTRGMHRSIASFLT 1i24A 107 :MIDRSRAVYTQHNNV T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1i24A 126 :NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRT T0333 218 :GTIELQAFGIGAVEPIIAAAGEVDADFVLALGD 1i24A 178 :ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQG T0333 251 :LDISPLGT 1i24A 217 :TDETEMHE T0333 259 :LP 1i24A 226 :LR T0333 267 :GWTPLHTLL 1i24A 228 :NRLDYDAVF T0333 286 :GGGTVMTAIDAGIPQLLAP 1i24A 239 :ALNRFCVQAAVGHPLTVYG T0333 305 :DPRDQFQHTAREAV 1i24A 267 :DIRDTVQCVEIAIA T0333 319 :SRRGIGLV 1i24A 285 :AGEFRVFN T0333 327 :STSDKVDADLLRRLIG 1i24A 297 :QFSVNELASLVTKAGS Number of specific fragments extracted= 15 number of extra gaps= 0 total=2936 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ff9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ff9A expands to /projects/compbio/data/pdb/1ff9.pdb.gz 1ff9A:# T0333 read from 1ff9A/merged-good-all-a2m # 1ff9A read from 1ff9A/merged-good-all-a2m # adding 1ff9A to template set # found chain 1ff9A in template set Warning: unaligning (T0333)G117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ff9A)F80 T0333 2 :LFVSSPGI 1ff9A 6 :VLMLGSGF T0333 15 :LIQLAWGFRTAGHDVLIAV 1ff9A 15 :TRPTLDVLTDSGIKVTVAC T0333 35 :EHADRAAAA 1ff9A 34 :RTLESAKKL T0333 44 :GLEVVDVAPDYS 1ff9A 48 :HSTPISLDVNDD T0333 98 :DGTMALVDDY 1ff9A 60 :AALDAEVAKH T0333 110 :DLVVYE 1ff9A 70 :DLVISL T0333 118 :ATVGLLAADRAGVPAVQRNQSAW 1ff9A 81 :HATVIKSAIRQKKHVVTTSYVSP T0333 141 :RTRGMHRSIASFLTDLMDKHQVSL 1ff9A 168 :LGYKFSWSSRGVLLALRNAASFYK T0333 168 :VATIESFPPSLL 1ff9A 192 :DGKVTNVAGPEL T0333 180 :LEAEPEGWFMR 1ff9A 210 :YFIYPGFAFVA T0333 192 :VPYGGGAVLGDRLPPVPARPEVAITMGTIELQ 1ff9A 221 :YPNRDSTPYKERYQIPEADNIVRGTLRYQGFP T0333 232 :PIIAAAGEVD 1ff9A 253 :QFIKVLVDIG T0333 248 :LGDLDISPLGT 1ff9A 264 :LSDEEQPFLKE T0333 269 :TPLHTLLRT 1ff9A 276 :IPWKEATQK T0333 318 :V 1ff9A 285 :I T0333 321 :RGIG 1ff9A 286 :VKAS T0333 327 :ST 1ff9A 291 :AS T0333 334 :ADLLRRLI 1ff9A 293 :EQDIVSTI T0333 342 :GDESLRTAAREVREEMV 1ff9A 307 :ESTEEQKRIVAGLKWLG T0333 360 :LPTPAETVRRIVERI 1ff9A 333 :RGNALDTLCATLEEK Number of specific fragments extracted= 20 number of extra gaps= 0 total=2956 Number of alignments=148 # 1ff9A read from 1ff9A/merged-good-all-a2m # found chain 1ff9A in template set Warning: unaligning (T0333)G117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ff9A)F80 T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAV 1ff9A 10 :GSGFVTRPTLDVLTDSGIKVTVAC T0333 35 :EHADRAAA 1ff9A 34 :RTLESAKK T0333 43 :AGLEVVDVAPDYSA 1ff9A 47 :QHSTPISLDVNDDA T0333 99 :GTMALVDD 1ff9A 61 :ALDAEVAK T0333 109 :PDLVVY 1ff9A 69 :HDLVIS T0333 118 :ATVGLLAADRAGV 1ff9A 81 :HATVIKSAIRQKK T0333 132 :AVQRNQSA 1ff9A 94 :HVVTTSYV T0333 140 :WRTRGMHRSIASFLTDL 1ff9A 128 :GIDHLYAIKTIEEVHAA T0333 185 :EGWFMRWVPYGGGAVLGDRLPPVP 1ff9A 145 :GGKIKTFLSYCGGLPAPESSDNPL T0333 209 :ARPEVAITM 1ff9A 238 :ADNIVRGTL T0333 223 :QAFGIGAVEPIIAAAGE 1ff9A 247 :RYQGFPQFIKVLVDIGF T0333 248 :LGDLDISPLGTLP 1ff9A 264 :LSDEEQPFLKEAI T0333 270 :PLHTL 1ff9A 277 :PWKEA T0333 314 :AREAV 1ff9A 282 :TQKIV T0333 322 :GI 1ff9A 287 :KA T0333 328 :TS 1ff9A 289 :SS T0333 330 :DKVD 1ff9A 292 :SEQD T0333 334 :ADLLRRLIG 1ff9A 297 :VSTIVSNAT T0333 343 :DESLRTAAREVREEMV 1ff9A 308 :STEEQKRIVAGLKWLG T0333 361 :PTPAETVRRIVERIS 1ff9A 423 :PMNSKINDPLMKELK T0333 376 :G 1ff9A 441 :G Number of specific fragments extracted= 21 number of extra gaps= 0 total=2977 Number of alignments=149 # 1ff9A read from 1ff9A/merged-good-all-a2m # found chain 1ff9A in template set Warning: unaligning (T0333)G117 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ff9A)F80 T0333 1 :MLFVSSPG 1ff9A 6 :VLMLGSGF T0333 14 :PLIQLAWGFRTAGHDVLIAV 1ff9A 14 :VTRPTLDVLTDSGIKVTVAC T0333 36 :HADRAAAAG 1ff9A 35 :TLESAKKLS T0333 45 :LEVVDVAPDYS 1ff9A 49 :STPISLDVNDD T0333 98 :DGTMALVD 1ff9A 60 :AALDAEVA T0333 108 :RPDLVVYEQ 1ff9A 68 :KHDLVISLI T0333 120 :VGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1ff9A 83 :TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI T0333 181 :EAEPEGWFMRWVPYGGGA 1ff9A 209 :PYFIYPGFAFVAYPNRDS T0333 199 :VLGDRLPPVPARPEVAITMGTIEL 1ff9A 228 :PYKERYQIPEADNIVRGTLRYQGF T0333 227 :IGAVEPIIA 1ff9A 252 :PQFIKVLVD T0333 240 :VD 1ff9A 261 :IG T0333 248 :LGDLDISPLGTLPR 1ff9A 264 :LSDEEQPFLKEAIP T0333 309 :QFQHTAREA 1ff9A 278 :WKEATQKIV T0333 327 :STSDKVDADLLRR 1ff9A 290 :SASEQDIVSTIVS T0333 342 :GDESLRTAAREVREEM 1ff9A 307 :ESTEEQKRIVAGLKWL Number of specific fragments extracted= 15 number of extra gaps= 0 total=2992 Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bisA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333/2bisA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0333/2bisA/merged-good-all-a2m.gz for input Trying 2bisA/merged-good-all-a2m Error: Couldn't open file 2bisA/merged-good-all-a2m or 2bisA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f6dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f6dA expands to /projects/compbio/data/pdb/1f6d.pdb.gz 1f6dA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1f6dA Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1f6dA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1f6dA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1f6dA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1f6dA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0333 read from 1f6dA/merged-good-all-a2m # 1f6dA read from 1f6dA/merged-good-all-a2m # adding 1f6dA to template set # found chain 1f6dA in template set T0333 1 :M 1f6dA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1f6dA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAV 1f6dA 29 :FEAKVCV T0333 34 :AEHADRAAAA 1f6dA 37 :AQHREMLDQV T0333 66 :DNPRFAETVATRPAIDLEEWGVQIAAVNRPL 1f6dA 51 :SIVPDYDLNIMQPGQGLTEITCRILEGLKPI T0333 104 :VDDYRPDLVVYEQGA 1f6dA 82 :LAEFKPDVVLVHGDT T0333 119 :TVGLLAADRAGVPAVQRNQSAW 1f6dA 100 :LATSLAAFYQRIPVGHVEAGLR T0333 141 :RTRGMHRSIASFLTDLMD 1f6dA 123 :GDLYSPWPEEANRTLTGH T0333 166 :EPVATIESFPPSLLLEAEPE 1f6dA 141 :LAMYHFSPTETSRQNLLREN T0333 187 :WFMRWVPYGGGAV 1f6dA 161 :VADSRIFITGNTV T0333 200 :LGDRLPP 1f6dA 197 :NYPFIDP T0333 209 :ARPEVAITMGTIELQ 1f6dA 204 :DKKMILVTGHRRESF T0333 224 :AFGIGAVEPIIAAAGEVD 1f6dA 220 :RGFEEICHALADIATTHQ T0333 242 :ADFVLALG 1f6dA 239 :IQIVYPVH T0333 251 :L 1f6dA 248 :N T0333 254 :SPLGT 1f6dA 249 :PNVRE T0333 259 :LPRNVRAVGWT 1f6dA 261 :HVKNVILIDPQ T0333 270 :PLHTLLRTCTAVVHHGG 1f6dA 275 :PFVWLMNHAWLILTDSG T0333 288 :GTVMTAIDAGIPQLLAPDPRDQFQ 1f6dA 292 :GIQEEAPSLGKPVLVMRDTTERPE T0333 318 :VSRRGIG 1f6dA 316 :AVTAGTV T0333 325 :LV 1f6dA 324 :LV T0333 327 :STSDKV 1f6dA 327 :TDKQRI T0333 334 :ADLLRRLIGDESLRTAARE 1f6dA 333 :VEEVTRLLKDENEYQAMSR T0333 357 :MVALP 1f6dA 356 :YGDGQ T0333 363 :PAETVRRIVER 1f6dA 361 :ACSRILEALKN Number of specific fragments extracted= 25 number of extra gaps= 0 total=3017 Number of alignments=151 # 1f6dA read from 1f6dA/merged-good-all-a2m # found chain 1f6dA in template set T0333 1 :M 1f6dA 1 :M T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1f6dA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAVAE 1f6dA 29 :FEAKVCVTA T0333 52 :PDYSAVKVFEQV 1f6dA 38 :QHREMLDQVLKL T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIAA 1f6dA 50 :FSIVPDYDLNIMQPGQGLTEITCRILE T0333 99 :GTMALVDDYRPDLVVYEQGA 1f6dA 77 :GLKPILAEFKPDVVLVHGDT T0333 119 :TVGLLAADRAGVPAVQRNQSA 1f6dA 100 :LATSLAAFYQRIPVGHVEAGL T0333 140 :WRTRGMHRSIASF 1f6dA 124 :DLYSPWPEEANRT T0333 153 :LTDLMDKHQVSLPEPVATIE 1f6dA 138 :TGHLAMYHFSPTETSRQNLL T0333 173 :SFPPS 1f6dA 160 :NVADS T0333 191 :WVPYGGGAV 1f6dA 165 :RIFITGNTV T0333 200 :LGDRLPPVPARPEVAITMG 1f6dA 194 :LAANYPFIDPDKKMILVTG T0333 219 :TIELQAFGIGAVEPIIAAAGEV 1f6dA 214 :RRESFGRGFEEICHALADIATT T0333 241 :DADFVLALG 1f6dA 238 :DIQIVYPVH T0333 250 :DLDI 1f6dA 248 :NPNV T0333 254 :SPLGTL 1f6dA 257 :RILGHV T0333 261 :RNVRAVGWTP 1f6dA 263 :KNVILIDPQE T0333 271 :LHTLLRTCTAVVHHGGGG 1f6dA 276 :FVWLMNHAWLILTDSGGI T0333 290 :VMTAIDAGIPQLLAPDPRDQF 1f6dA 294 :QEEAPSLGKPVLVMRDTTERP T0333 313 :TAR 1f6dA 315 :EAV T0333 320 :RRGIGLVSTSDKVD 1f6dA 318 :TAGTVRLVGTDKQR T0333 334 :ADLLRRLIGDESLRTAARE 1f6dA 333 :VEEVTRLLKDENEYQAMSR T0333 360 :LPTP 1f6dA 352 :AHNP T0333 366 :TVRRIVERISG 1f6dA 361 :ACSRILEALKN Number of specific fragments extracted= 24 number of extra gaps= 0 total=3041 Number of alignments=152 # 1f6dA read from 1f6dA/merged-good-all-a2m # found chain 1f6dA in template set T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAG 1f6dA 3 :VLTVFGTRPEAIKMAPLVHALAKDP T0333 27 :HDVLIAV 1f6dA 31 :AKVCVTA T0333 34 :AEHADRAAA 1f6dA 40 :REMLDQVLK T0333 43 :AGLEVVDVAPDYS 1f6dA 50 :FSIVPDYDLNIMQ T0333 66 :DNPRF 1f6dA 63 :PGQGL T0333 83 :E 1f6dA 68 :T T0333 91 :AVNRPLVDGTMALVDDYRPDLVVYEQGATVGL 1f6dA 69 :EITCRILEGLKPILAEFKPDVVLVHGDTTTTL T0333 123 :LAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1f6dA 104 :LAAFYQRIPVGHVEAGLRTGDLYSPWPEEANR T0333 185 :EGWFMRWVPYGGGA 1f6dA 162 :ADSRIFITGNTVID T0333 200 :LGDRL 1f6dA 194 :LAANY T0333 205 :PPVPARPEVAITMGTIELQ 1f6dA 200 :FIDPDKKMILVTGHRRESF T0333 226 :G 1f6dA 219 :G T0333 228 :GAVEPIIAAAGEV 1f6dA 220 :RGFEEICHALADI T0333 241 :DADFVLALGD 1f6dA 238 :DIQIVYPVHL T0333 251 :LDISPLGTLPRNVRAVGWTPLHTLL 1f6dA 253 :EPVNRILGHVKNVILIDPQEYLPFV T0333 276 :RTCTAVVHHGG 1f6dA 281 :NHAWLILTDSG T0333 293 :AIDAGIPQLLAPDPRDQF 1f6dA 297 :APSLGKPVLVMRDTTERP T0333 315 :REAVSRRGIGLV 1f6dA 315 :EAVTAGTVRLVG T0333 329 :SDKVDADLLRRLIGDESLR 1f6dA 328 :DKQRIVEEVTRLLKDENEY T0333 355 :EEMVALPTPA 1f6dA 347 :QAMSRAHNPY T0333 365 :ETVRRIVERIS 1f6dA 360 :QACSRILEALK Number of specific fragments extracted= 21 number of extra gaps= 0 total=3062 Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bfwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bfwA expands to /projects/compbio/data/pdb/2bfw.pdb.gz 2bfwA:Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 24, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 26, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 28, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 30, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 77, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 79, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 81, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 83, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 85, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 87, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 89, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 219, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 221, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 257, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 261, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 271, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 317, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 352, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 358, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 360, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 362, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 364, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 366, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 368, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 370, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 399, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 417, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 419, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 434, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 436, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 438, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 440, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 649, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 651, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 653, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 659, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 771, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 773, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 946, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 952, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1183, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1185, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1187, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1189, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1191, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1193, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1195, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1197, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1475, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1477, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1479, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1481, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1483, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1485, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1634, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 2bfwA Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 2bfwA # T0333 read from 2bfwA/merged-good-all-a2m # 2bfwA read from 2bfwA/merged-good-all-a2m # adding 2bfwA to template set # found chain 2bfwA in template set Warning: unaligning (T0333)G196 because first residue in template chain is (2bfwA)G218 T0333 197 :GAV 2bfwA 219 :IDC T0333 200 :LGDRLPPV 2bfwA 225 :NESYLTGS T0333 209 :ARPEVAITMGTIELQAFGIGAVEPIIAAAGEVD 2bfwA 247 :DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK T0333 242 :ADFVLALGDLD 2bfwA 284 :MRFIIIGKGDP T0333 259 :LPRNVRAV 2bfwA 306 :KHGNVKVI T0333 267 :GWTP 2bfwA 315 :EMLS T0333 271 :LHTLLRTCTAVVHHG 2bfwA 322 :VRELYGSVDFVIIPS T0333 286 :G 2bfwA 342 :G T0333 288 :GTVMTAIDAGIPQLLAPDPR 2bfwA 343 :LVALEAMCLGAIPIASAVGG T0333 318 :VSR 2bfwA 363 :LRD T0333 321 :RGIG 2bfwA 369 :NETG T0333 325 :LV 2bfwA 374 :LV T0333 327 :STSDKV 2bfwA 378 :GDPGEL T0333 334 :ADLLRRLIG 2bfwA 384 :ANAILKALE T0333 343 :DES 2bfwA 394 :SRS T0333 346 :LRTAAREVREE 2bfwA 401 :FRENCKKRAMS Number of specific fragments extracted= 16 number of extra gaps= 0 total=3078 Number of alignments=154 # 2bfwA read from 2bfwA/merged-good-all-a2m # found chain 2bfwA in template set Warning: unaligning (T0333)A198 because first residue in template chain is (2bfwA)G218 T0333 199 :VLGDRLPPVP 2bfwA 219 :IDCSFWNESY T0333 209 :ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV 2bfwA 247 :DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSK T0333 241 :DADFVLALGDLDI 2bfwA 283 :EMRFIIIGKGDPE T0333 255 :PLGTLPRNVRAVGWT 2bfwA 302 :SLEEKHGNVKVITEM T0333 270 :P 2bfwA 318 :S T0333 271 :LHTLLRTCTAVVHHG 2bfwA 322 :VRELYGSVDFVIIPS T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 2bfwA 341 :FGLVALEAMCLGAIPIASAVGG T0333 314 :AREAVSR 2bfwA 363 :LRDIITN T0333 322 :GIGLVSTS 2bfwA 370 :ETGILVKA T0333 330 :DKVD 2bfwA 379 :DPGE T0333 334 :ADLLRRLIG 2bfwA 384 :ANAILKALE T0333 343 :DESLRTAAREVREEMVA 2bfwA 394 :SRSDLSKFRENCKKRAM Number of specific fragments extracted= 12 number of extra gaps= 0 total=3090 Number of alignments=155 # 2bfwA read from 2bfwA/merged-good-all-a2m # found chain 2bfwA in template set Warning: unaligning (T0333)P361 because last residue in template chain is (2bfwA)S413 T0333 207 :VPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVD 2bfwA 245 :GMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK T0333 242 :ADFVLALGD 2bfwA 284 :MRFIIIGKG T0333 255 :PL 2bfwA 295 :EL T0333 257 :GTLPRNVRAVGWTP 2bfwA 304 :EEKHGNVKVITEML T0333 271 :LHTLLRTCTAVVHHG 2bfwA 322 :VRELYGSVDFVIIPS T0333 287 :GGTVMTAIDAGIPQLLAPD 2bfwA 342 :GLVALEAMCLGAIPIASAV T0333 311 :QHTARE 2bfwA 361 :GGLRDI T0333 319 :SRRGIGLVSTSDKVDADLLRRLIG 2bfwA 369 :NETGILVKAGDPGELANAILKALE T0333 343 :DESLRTAAREVREEMVAL 2bfwA 395 :RSDLSKFRENCKKRAMSF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3099 Number of alignments=156 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cs0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cs0A expands to /projects/compbio/data/pdb/1cs0.pdb.gz 1cs0A:Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 4294, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 4296, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 7661, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7663, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7665, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7667, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7669, because occupancy 0.500 <= existing 1.000 in 1cs0A # T0333 read from 1cs0A/merged-good-all-a2m # 1cs0A read from 1cs0A/merged-good-all-a2m # adding 1cs0A to template set # found chain 1cs0A in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0A)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 T0333 2 :LFVSSPGI 1cs0A 10 :ILILGAGP T0333 10 :GHL 1cs0A 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1cs0A 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1cs0A 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1cs0A 61 :ADATYIEP T0333 93 :NRPL 1cs0A 70 :HWEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0A 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1cs0A 112 :GVT T0333 136 :NQSAW 1cs0A 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1cs0A 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATI 1cs0A 521 :DLHPVYK T0333 172 :ESFPPSLL 1cs0A 529 :VDTCAAEF T0333 185 :EGWFMRWVPYGG 1cs0A 537 :ATDTAYMYSTYE T0333 202 :DR 1cs0A 549 :EE T0333 204 :LPPV 1cs0A 553 :ANPS T0333 210 :RPEVAITMGT 1cs0A 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1cs0A 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 277 :T 1cs0A 611 :D T0333 278 :CTAVVHHG 1cs0A 613 :SDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1cs0A 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1cs0A 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1cs0A 647 :PLKLARA T0333 318 :VSRRGIGLV 1cs0A 654 :LEAAGVPVI T0333 327 :ST 1cs0A 664 :TS T0333 334 :ADLLRRLIG 1cs0A 666 :PDAIDRAED T0333 347 :RTAAREVREE 1cs0A 675 :RERFQHAVER T0333 363 :PAETVRRIVERIS 1cs0A 697 :AIEMAVEKAKEIG Number of specific fragments extracted= 27 number of extra gaps= 1 total=3126 Number of alignments=157 # 1cs0A read from 1cs0A/merged-good-all-a2m # found chain 1cs0A in template set Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 Warning: unaligning (T0333)R354 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cs0A)V750 Warning: unaligning (T0333)E355 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cs0A)V750 T0333 2 :LFVSSPGI 1cs0A 12 :ILGAGPIV T0333 10 :GHL 1cs0A 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1cs0A 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDYS 1cs0A 61 :ADATYIEPIHW T0333 98 :DGTMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0A 72 :EVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1cs0A 112 :GVT T0333 135 :RNQSA 1cs0A 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1cs0A 479 :VGITGLNADFLRQLKRKG T0333 188 :FMRWVP 1cs0A 525 :VYKRVD T0333 198 :AVLGDR 1cs0A 531 :TCAAEF T0333 205 :PPVP 1cs0A 537 :ATDT T0333 210 :RPEVAITMGTIELQAFGIGA 1cs0A 559 :REKIMVLGGGPNRIGQGIEF T0333 230 :VEPIIAAAGEVDADFVLALGDLDI 1cs0A 582 :CVHASLALREDGYETIMVNCNPET T0333 261 :RNVRAVGWT 1cs0A 614 :DRLYFEPVT T0333 271 :LHTLLR 1cs0A 626 :VLEIVR T0333 277 :TCTAVVHHGGGGTVM 1cs0A 634 :KPKGVIVQYGGQTPL T0333 292 :TAIDAGIPQLLAPDPR 1cs0A 653 :ALEAAGVPVIGTSPDA T0333 308 :DQF 1cs0A 674 :DRE T0333 313 :TAREAVSRRG 1cs0A 677 :RFQHAVERLK T0333 323 :IGLVST 1cs0A 691 :ANATVT T0333 330 :DKVD 1cs0A 697 :AIEM T0333 334 :ADLLRRL 1cs0A 702 :VEKAKEI T0333 342 :GDESLRTAAREV 1cs0A 729 :YDEADLRRYFQT T0333 361 :P 1cs0A 799 :Y T0333 362 :TPAETVRRIVERIS 1cs0A 801 :LSQEIQDVMRQQVQ Number of specific fragments extracted= 25 number of extra gaps= 2 total=3151 Number of alignments=158 # 1cs0A read from 1cs0A/merged-good-all-a2m # found chain 1cs0A in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0A)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 T0333 1 :MLFVSSPGI 1cs0A 10 :ILILGAGPI T0333 10 :GH 1cs0A 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1cs0A 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1cs0A 51 :PATI T0333 40 :A 1cs0A 55 :M T0333 45 :LEVVDVAPDY 1cs0A 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0A 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1cs0A 112 :GV T0333 137 :QSAWRTRGMHRSIASFL 1cs0A 114 :TMIGATADAIDKAEDRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1cs0A 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1cs0A 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPIIA 1cs0A 559 :REKIMVLGGGPNRIGQGIEFDYCCVH T0333 236 :AAGEVDADFVLALGD 1cs0A 588 :ALREDGYETIMVNCN T0333 251 :LDISPLGTLPR 1cs0A 604 :ETVSTDYDTSD T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1cs0A 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1cs0A 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1cs0A 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1cs0A 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1cs0A 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1cs0A 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=3171 Number of alignments=159 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uqtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1uqtA expands to /projects/compbio/data/pdb/1uqt.pdb.gz 1uqtA:# T0333 read from 1uqtA/merged-good-all-a2m # 1uqtA read from 1uqtA/merged-good-all-a2m # adding 1uqtA to template set # found chain 1uqtA in template set Warning: unaligning (T0333)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uqtA)S19 Warning: unaligning (T0333)F22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1uqtA)G35 Warning: unaligning (T0333)D28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1uqtA)G35 Warning: unaligning (T0333)E115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1uqtA)D130 Warning: unaligning (T0333)G218 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1uqtA)R262 Warning: unaligning (T0333)T219 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1uqtA)R262 T0333 8 :GIGHLFPLIQLAWG 1uqtA 20 :AGGLAVGILGALKA T0333 29 :VLIAV 1uqtA 36 :GLWFG T0333 34 :AEH 1uqtA 45 :TGN T0333 41 :AAAGLEVVD 1uqtA 48 :EDQPLKKVK T0333 51 :APDYSAVKVF 1uqtA 57 :KGNITWASFN T0333 61 :EQVAKDNP 1uqtA 69 :EQDLDEYY T0333 69 :RFAETVA 1uqtA 90 :YRLDLVQ T0333 81 :DLEEWGVQIAAVNRP 1uqtA 97 :FQRPAWDGYLRVNAL T0333 100 :TMALVDDY 1uqtA 112 :LADKLLPL T0333 108 :R 1uqtA 123 :D T0333 110 :DLVVY 1uqtA 124 :DIIWI T0333 116 :QGATVGLLAADRAGV 1uqtA 131 :YHLLPFAHELRKRGV T0333 131 :PAVQRNQSAW 1uqtA 148 :RIGFFLHIPF T0333 145 :MHRSIASFLTDLMDKHQVSL 1uqtA 185 :QTENDRLAFLDCLSNLTRVT T0333 165 :P 1uqtA 206 :R T0333 176 :PSLLLEAEPEGWFMR 1uqtA 207 :SAKSHTAWGKAFRTE T0333 192 :VPYGGGAV 1uqtA 222 :VYPIGIEP T0333 200 :LGDRL 1uqtA 247 :LKAEL T0333 209 :ARPEVAITM 1uqtA 252 :KNVQNIFSV T0333 220 :IELQAFGIGAVEPIIAAAGEV 1uqtA 263 :LDYSKGLPERFLAYEALLEKY T0333 242 :ADFVLALGDLD 1uqtA 290 :IRYTQIAPTSR T0333 254 :SPL 1uqtA 327 :LGW T0333 261 :RNVRAV 1uqtA 330 :TPLYYL T0333 267 :GWTPLHTLLRT 1uqtA 337 :QHFDRKLLMKI T0333 278 :CTAVVHHG 1uqtA 351 :SDVGLVTP T0333 286 :GG 1uqtA 362 :GM T0333 288 :GTVMTAIDAG 1uqtA 365 :LVAKEYVAAQ T0333 298 :IPQLLAPDPRDQFQHTAR 1uqtA 379 :PGVLVLSQFAGAANELTS T0333 324 :G 1uqtA 397 :A T0333 325 :LV 1uqtA 399 :IV T0333 327 :STSDKV 1uqtA 403 :YDRDEV T0333 334 :ADLLRRLIG 1uqtA 409 :AAALDRALT T0333 344 :ESLRTAAREVREEMVALP 1uqtA 421 :AERISRHAEMLDVIVKND T0333 364 :AETVRR 1uqtA 439 :INHWQE T0333 370 :IVERI 1uqtA 446 :FISDL Number of specific fragments extracted= 35 number of extra gaps= 3 total=3206 Number of alignments=160 # 1uqtA read from 1uqtA/merged-good-all-a2m # found chain 1uqtA in template set Warning: unaligning (T0333)P7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uqtA)S19 Warning: unaligning (T0333)F22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1uqtA)G35 Warning: unaligning (T0333)D28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1uqtA)G35 Warning: unaligning (T0333)Y114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1uqtA)D130 Warning: unaligning (T0333)E115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1uqtA)D130 Warning: unaligning (T0333)G218 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1uqtA)R262 Warning: unaligning (T0333)T219 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1uqtA)R262 T0333 8 :GIGHLFPLIQLAWG 1uqtA 20 :AGGLAVGILGALKA T0333 29 :VLIAV 1uqtA 36 :GLWFG T0333 34 :AEHADRA 1uqtA 45 :TGNEDQP T0333 41 :AAAGLEVVDVAPDYSAVK 1uqtA 56 :KKGNITWASFNLSEQDLD T0333 59 :VFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNR 1uqtA 75 :YYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNA T0333 99 :GTMALVDD 1uqtA 111 :LLADKLLP T0333 107 :YRPDLVV 1uqtA 122 :DDDIIWI T0333 116 :QGATVGLLAADRAGVP 1uqtA 131 :YHLLPFAHELRKRGVN T0333 132 :AVQRNQSA 1uqtA 149 :IGFFLHIP T0333 140 :WRTRGMHRSIASFLTDL 1uqtA 163 :FNALPTYDTLLEQLCDY T0333 158 :DKHQVSLPEPVATIE 1uqtA 180 :DLLGFQTENDRLAFL T0333 173 :SFPP 1uqtA 199 :NLTR T0333 180 :LEAEPE 1uqtA 203 :VTTRSA T0333 186 :GWFMRWVPYGGGAVLG 1uqtA 214 :WGKAFRTEVYPIGIEP T0333 205 :PPVP 1uqtA 238 :GPLP T0333 209 :ARPEVAITM 1uqtA 252 :KNVQNIFSV T0333 220 :IE 1uqtA 263 :LD T0333 223 :QAFGIGAVEPIIAAAGEV 1uqtA 265 :YSKGLPERFLAYEALLEK T0333 241 :DADFVLALG 1uqtA 289 :KIRYTQIAP T0333 250 :DLDI 1uqtA 300 :RGDV T0333 254 :SP 1uqtA 328 :GW T0333 261 :RNVRAVGWT 1uqtA 330 :TPLYYLNQH T0333 270 :PLHTLLR 1uqtA 340 :DRKLLMK T0333 277 :TCTAVVHHG 1uqtA 350 :YSDVGLVTP T0333 286 :GGGTVMTAIDA 1uqtA 363 :MNLVAKEYVAA T0333 297 :GIPQLLAPDPR 1uqtA 378 :NPGVLVLSQFA T0333 308 :DQF 1uqtA 392 :NEL T0333 322 :GIGLVSTS 1uqtA 395 :TSALIVNP T0333 330 :DKVD 1uqtA 404 :DRDE T0333 334 :ADLLRRLIG 1uqtA 409 :AAALDRALT T0333 343 :DESLRTAAREVREEMVAL 1uqtA 420 :LAERISRHAEMLDVIVKN T0333 362 :TPAETVRRIVERIS 1uqtA 438 :DINHWQECFISDLK Number of specific fragments extracted= 32 number of extra gaps= 3 total=3238 Number of alignments=161 # 1uqtA read from 1uqtA/merged-good-all-a2m # found chain 1uqtA in template set Warning: unaligning (T0333)Y114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1uqtA)D130 Warning: unaligning (T0333)E115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1uqtA)D130 Warning: unaligning (T0333)G218 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1uqtA)R262 Warning: unaligning (T0333)T219 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1uqtA)R262 T0333 48 :VDVAPDYSAVKVF 1uqtA 63 :ASFNLSEQDLDEY T0333 64 :AKDNPRFA 1uqtA 88 :FHYRLDLV T0333 73 :TVATRPAIDLEEWGVQIAAVNRPLVD 1uqtA 96 :QFQRPAWDGYLRVNALLADKLLPLLQ T0333 107 :YRPDLVV 1uqtA 122 :DDDIIWI T0333 116 :QGATVGLLAADRAGV 1uqtA 131 :YHLLPFAHELRKRGV T0333 131 :PAVQRNQSAWRTRGMHRSIASFLT 1uqtA 148 :RIGFFLHIPFPTPEIFNALPTYDT T0333 185 :EGWFMRWVPYGGGA 1uqtA 214 :WGKAFRTEVYPIGI T0333 199 :VLGDRL 1uqtA 239 :PLPPKL T0333 205 :PP 1uqtA 249 :AE T0333 208 :PARPEVAITM 1uqtA 251 :LKNVQNIFSV T0333 220 :IELQAFGIGAVEPIIAAAGEVD 1uqtA 263 :LDYSKGLPERFLAYEALLEKYP T0333 242 :ADFVLALGDLD 1uqtA 290 :IRYTQIAPTSR T0333 254 :SPL 1uqtA 301 :GDV T0333 264 :RAVGWTPLHTLL 1uqtA 333 :YYLNQHFDRKLL T0333 276 :RTCTAVVHH 1uqtA 349 :RYSDVGLVT T0333 285 :GGGGTVMTAIDA 1uqtA 362 :GMNLVAKEYVAA T0333 298 :IPQLLAPDP 1uqtA 379 :PGVLVLSQF T0333 318 :VSRRGIGLVSTSDKVDADLLRRLIG 1uqtA 393 :ELTSALIVNPYDRDEVAAALDRALT T0333 344 :ESLRTAAREVREEMVAL 1uqtA 421 :AERISRHAEMLDVIVKN T0333 362 :TPAETVRRIVERI 1uqtA 438 :DINHWQECFISDL Number of specific fragments extracted= 20 number of extra gaps= 2 total=3258 Number of alignments=162 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jixA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1jixA/merged-good-all-a2m # 1jixA read from 1jixA/merged-good-all-a2m # found chain 1jixA in training set T0333 1 :M 1jixA 1 :M T0333 2 :LFVSSPGI 1jixA 3 :IAIINMGN T0333 11 :HLFPLIQLAWGFRTAGHDVLIAVAEH 1jixA 19 :PSSETIYLFKVISEMGLNVDIISLKN T0333 45 :LEVVDVAPDYSAVKVF 1jixA 45 :GVYTKSFDEVDVNDYD T0333 110 :DLVVYEQGA 1jixA 61 :RLIVVNSSI T0333 120 :VGLLAADRAGVPAVQRNQSAW 1jixA 82 :SAQKFMAKYKSKIYYLFTDIR T0333 143 :RGMH 1jixA 138 :GINL T0333 151 :SFLTDLMDK 1jixA 142 :DIAKAAHKK T0333 164 :LPEPVATIESFPPSLLLEAEPEGWFMR 1jixA 151 :VDNVIEFEYFPIEQYKIHMNDFQLSKP T0333 209 :ARPEVAITMGTIELQAFGIGAV 1jixA 178 :TKKTLDVIYGGSFRSGQRESKM T0333 234 :IAAAGEVDADFVLA 1jixA 200 :VEFLFDTGLNIEFF T0333 249 :GDLDISPLGT 1jixA 214 :GNAREKQFKN T0333 259 :LPRNVRAVGWTPLHTLLRT 1jixA 228 :WTKAPVFTGKIPMNMVSEK T0333 278 :CTAVVHHG 1jixA 250 :AIAALIIG T0333 288 :GTVMTAIDAGIPQLLA 1jixA 268 :LRVWETMASDAVMLID T0333 315 :R 1jixA 291 :R T0333 325 :LV 1jixA 292 :II T0333 327 :STSDKV 1jixA 301 :NNRAEL T0333 334 :ADLLRRLIGDES 1jixA 307 :IDRVNELKHSDV T0333 346 :LRTAAREVREEMVALPTPAETVRRIVERI 1jixA 320 :RKEMLSIQHDILNKTRAKKAEWQDAFKKA Number of specific fragments extracted= 20 number of extra gaps= 0 total=3278 Number of alignments=163 # 1jixA read from 1jixA/merged-good-all-a2m # found chain 1jixA in training set T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAE 1jixA 18 :VPSSETIYLFKVISEMGLNVDIISLK T0333 65 :KD 1jixA 44 :NG T0333 72 :ETVATRPAIDLEE 1jixA 46 :VYTKSFDEVDVND T0333 109 :P 1jixA 59 :Y T0333 110 :DLVVYE 1jixA 61 :RLIVVN T0333 117 :GA 1jixA 77 :NL T0333 119 :TVGLLAADRAGVPAVQRNQSA 1jixA 81 :LSAQKFMAKYKSKIYYLFTDI T0333 140 :WRTRGM 1jixA 116 :PWAYLY T0333 158 :DKHQVSLPEPVATIE 1jixA 131 :PIKVISQGINLDIAK T0333 173 :SFPPS 1jixA 149 :KKVDN T0333 191 :WVPYGGGAVLG 1jixA 154 :VIEFEYFPIEQ T0333 202 :DRLPPVP 1jixA 170 :NDFQLSK T0333 209 :ARPEVAITMGTIE 1jixA 179 :KKTLDVIYGGSFR T0333 223 :QAFGIGAVEPIIAAA 1jixA 192 :SGQRESKMVEFLFDT T0333 241 :DADFVLALG 1jixA 207 :GLNIEFFGN T0333 250 :DLDISPLGTLP 1jixA 217 :REKQFKNPKYP T0333 261 :RNVRAVGWTPLHTLLR 1jixA 230 :KAPVFTGKIPMNMVSE T0333 277 :TCTAVVHHG 1jixA 249 :QAIAALIIG T0333 286 :GGGTVMTAIDAGIPQLLA 1jixA 266 :ITLRVWETMASDAVMLID T0333 304 :PDPR 1jixA 294 :NDAR T0333 325 :LVST 1jixA 298 :FYVN T0333 330 :DKVD 1jixA 302 :NRAE T0333 334 :ADLLRRLIGDESLRTAAREVREEMVALP 1jixA 307 :IDRVNELKHSDVLRKEMLSIQHDILNKT T0333 362 :TPAETVRRIVERIS 1jixA 337 :KKAEWQDAFKKAID Number of specific fragments extracted= 24 number of extra gaps= 0 total=3302 Number of alignments=164 # 1jixA read from 1jixA/merged-good-all-a2m # found chain 1jixA in training set T0333 1 :MLFVSSPG 1jixA 3 :IAIINMGN T0333 11 :HLFPLIQLAWGFRTAGHDVLIAV 1jixA 19 :PSSETIYLFKVISEMGLNVDIIS T0333 44 :GLEVVDVAPDYSAVKVF 1jixA 44 :NGVYTKSFDEVDVNDYD T0333 110 :DLVVYEQ 1jixA 61 :RLIVVNS T0333 117 :GATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1jixA 79 :AILSAQKFMAKYKSKIYYLFTDIRLPFSQSWPNVKNRP T0333 155 :DLMDKHQVSLPEPVATIESFPP 1jixA 119 :YLYTEEELLIKSPIKVISQGIN T0333 182 :AEPEGWFMRWVPYGGGA 1jixA 148 :HKKVDNVIEFEYFPIEQ T0333 199 :VLGDRLPPVPARPEVAITMGTIELQAFGIGA 1jixA 168 :HMNDFQLSKPTKKTLDVIYGGSFRSGQRESK T0333 233 :IIAAAGEVDADFVLA 1jixA 199 :MVEFLFDTGLNIEFF T0333 249 :GDLDISPL 1jixA 214 :GNAREKQF T0333 257 :GTLPRNVRAVGWTPLHTLL 1jixA 226 :YPWTKAPVFTGKIPMNMVS T0333 276 :RTCTAVVHHGG 1jixA 248 :SQAIAALIIGD T0333 287 :GGTVMTAIDAGIPQLLA 1jixA 267 :TLRVWETMASDAVMLID T0333 324 :GL 1jixA 291 :RI T0333 327 :STSDKVDADLLRRLIGD 1jixA 300 :VNNRAELIDRVNELKHS T0333 344 :ESLRTAAREVREEMVALP 1jixA 318 :VLRKEMLSIQHDILNKTR T0333 362 :TPAETVRRIVERIS 1jixA 337 :KKAEWQDAFKKAID Number of specific fragments extracted= 17 number of extra gaps= 0 total=3319 Number of alignments=165 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rzuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rzuA expands to /projects/compbio/data/pdb/1rzu.pdb.gz 1rzuA:# T0333 read from 1rzuA/merged-good-all-a2m # 1rzuA read from 1rzuA/merged-good-all-a2m # adding 1rzuA to template set # found chain 1rzuA in template set T0333 1 :M 1rzuA 1 :M T0333 2 :LFVSS 1rzuA 3 :VLSVS T0333 8 :GIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAA 1rzuA 16 :TGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV T0333 51 :APDYSAVKVFEQVAKDNPRFAETVATRP 1rzuA 75 :HERLDLLILDAPAYYERSGGPYLGQTGK T0333 81 :DLEEWGVQIAAVNRPLV 1rzuA 103 :DYPDNWKRFAALSLAAA T0333 102 :ALVDDY 1rzuA 120 :RIGAGV T0333 108 :RPDLVVYE 1rzuA 130 :RPDMVHAH T0333 116 :QGATVGLLAADRAG 1rzuA 139 :WQAAMTPVYMRYAE T0333 130 :VPAVQRNQSAW 1rzuA 156 :IPSLLTIHNIA T0333 141 :RTRGMHRSIASFLTDL 1rzuA 222 :LTAEFGMGLEGVIGSR T0333 161 :Q 1rzuA 238 :A T0333 166 :EPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAV 1rzuA 239 :HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN T0333 200 :LGDRLPPVPARPEVAITMGTIELQAF 1rzuA 280 :VAEHFRIDDDGSPLFCVISRLTWQKG T0333 230 :VEPIIAAAG 1rzuA 306 :IDLMAEAVD T0333 239 :EVDADFVLALGDLD 1rzuA 318 :SLGGRLVVLGAGDV T0333 253 :ISPLG 1rzuA 341 :ASRHH T0333 261 :RNVRAV 1rzuA 346 :GRVGVA T0333 267 :GWT 1rzuA 353 :GYN T0333 270 :PLHTLLRT 1rzuA 357 :PLSHLMQA T0333 278 :CTAVVHHG 1rzuA 366 :CDAIIIPS T0333 286 :G 1rzuA 379 :G T0333 288 :GTVMTAIDAGIPQLLAPDPR 1rzuA 380 :LTQLYALRYGCIPVVARTGG T0333 308 :DQFQHTAREAVSRRGIG 1rzuA 402 :DTVIDANHAALASKAAT T0333 325 :LV 1rzuA 420 :VQ T0333 327 :STSDKV 1rzuA 425 :VTLDGL T0333 334 :ADLLRRLI 1rzuA 431 :KQAIRRTV T0333 342 :GDESLRTAA 1rzuA 442 :HDPKLWTQM T0333 354 :REEMVALPTPAETVRRIVERI 1rzuA 451 :QKLGMKSDVSWEKSAGLYAAL Number of specific fragments extracted= 28 number of extra gaps= 0 total=3347 Number of alignments=166 # 1rzuA read from 1rzuA/merged-good-all-a2m # found chain 1rzuA in template set T0333 1 :M 1rzuA 1 :M T0333 2 :LFV 1rzuA 3 :VLS T0333 5 :SSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 1rzuA 13 :LIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA T0333 43 :AGLEVVDVAPDY 1rzuA 76 :ERLDLLILDAPA T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIAAVN 1rzuA 88 :YYERSGGPYLGQTGKDYPDNWKRFAALSL T0333 99 :GTMALVDD 1rzuA 117 :AAARIGAG T0333 107 :YRPDLVVYE 1rzuA 129 :WRPDMVHAH T0333 116 :QGATVGLLAADRAG 1rzuA 139 :WQAAMTPVYMRYAE T0333 130 :VPAVQRNQSA 1rzuA 156 :IPSLLTIHNI T0333 149 :IASFLTDLMDKHQVSLPEPVATIE 1rzuA 199 :FLKGGLQTATALSTVSPSYAEEIL T0333 173 :SFPPS 1rzuA 235 :GSRAH T0333 191 :WVPYGGGAVLGDRLPPVP 1rzuA 240 :VLHGIVNGIDADVWNPAT T0333 209 :ARPEVAITMGTIE 1rzuA 289 :DGSPLFCVISRLT T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLALGDLDI 1rzuA 302 :WQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA T0333 254 :SPLG 1rzuA 342 :SRHH T0333 261 :RNVRA 1rzuA 346 :GRVGV T0333 266 :VGWT 1rzuA 352 :IGYN T0333 270 :PLHTLLR 1rzuA 357 :PLSHLMQ T0333 277 :TCTAVVHHG 1rzuA 365 :GCDAIIIPS T0333 286 :GGGTVMTAIDAGIPQLLAPDPR 1rzuA 378 :CGLTQLYALRYGCIPVVARTGG T0333 314 :AREAVSR 1rzuA 400 :LADTVID T0333 323 :IGLVSTS 1rzuA 418 :TGVQFSP T0333 330 :DKVD 1rzuA 426 :TLDG T0333 334 :ADLLRRLIG 1rzuA 431 :KQAIRRTVR T0333 343 :DESLRTAAREVR 1rzuA 443 :DPKLWTQMQKLG T0333 358 :VALP 1rzuA 455 :MKSD T0333 362 :TPAETVRRIVERIS 1rzuA 460 :SWEKSAGLYAALYS Number of specific fragments extracted= 27 number of extra gaps= 0 total=3374 Number of alignments=167 # 1rzuA read from 1rzuA/merged-good-all-a2m # found chain 1rzuA in template set T0333 1 :MLFVSSPGI 1rzuA 3 :VLSVSSEIY T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAV 1rzuA 18 :GLADVVGALPIALEAHGVRTRTLI T0333 34 :AEHADRA 1rzuA 45 :PAVKAAV T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVD 1rzuA 94 :GPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP T0333 106 :DYRPDLVVYEQGAT 1rzuA 128 :GWRPDMVHAHDWQA T0333 120 :VGLLAADRAG 1rzuA 143 :MTPVYMRYAE T0333 130 :VPAVQRNQSAWRTRGMHRSIASFLT 1rzuA 156 :IPSLLTIHNIAFQGQFGANIFSKLA T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPY 1rzuA 228 :MGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSA T0333 199 :VLGDRLPPVPARPEVAITMGTIELQ 1rzuA 279 :AVAEHFRIDDDGSPLFCVISRLTWQ T0333 225 :FGIGAVEPIIAAAGEVDADFVLALGD 1rzuA 304 :KGIDLMAEAVDEIVSLGGRLVVLGAG T0333 256 :L 1rzuA 333 :L T0333 257 :GTLPRNVRAVGWTP 1rzuA 342 :SRHHGRVGVAIGYN T0333 271 :LHTLL 1rzuA 358 :LSHLM T0333 276 :RTCTAVVHH 1rzuA 364 :AGCDAIIIP T0333 285 :GG 1rzuA 378 :CG T0333 288 :GTVMTAIDAGIPQLLAP 1rzuA 380 :LTQLYALRYGCIPVVAR T0333 317 :AVSRRGIGLV 1rzuA 412 :LASKAATGVQ T0333 327 :STSDKVDADLLRRLIG 1rzuA 424 :PVTLDGLKQAIRRTVR T0333 343 :DESL 1rzuA 443 :DPKL T0333 350 :AREVREEMVALP 1rzuA 447 :WTQMQKLGMKSD T0333 362 :TPAETVRRIVERI 1rzuA 460 :SWEKSAGLYAALY Number of specific fragments extracted= 21 number of extra gaps= 0 total=3395 Number of alignments=168 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cs0C/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cs0C expands to /projects/compbio/data/pdb/1cs0.pdb.gz 1cs0C:Skipped atom 15065, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 15067, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 15069, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 15071, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 15073, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18590, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18592, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18594, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18740, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18742, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18744, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18746, because occupancy 0.500 <= existing 0.500 in 1cs0C Skipped atom 18748, because occupancy 0.500 <= existing 0.500 in 1cs0C # T0333 read from 1cs0C/merged-good-all-a2m # 1cs0C read from 1cs0C/merged-good-all-a2m # adding 1cs0C to template set # found chain 1cs0C in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0C)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0C)D558 T0333 2 :LFVSSPGI 1cs0C 10 :ILILGAGP T0333 10 :GHL 1cs0C 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1cs0C 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1cs0C 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1cs0C 61 :ADATYIEP T0333 93 :NRPL 1cs0C 70 :HWEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0C 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1cs0C 112 :GVT T0333 135 :RNQSA 1cs0C 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1cs0C 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATI 1cs0C 521 :DLHPVYK T0333 172 :ESFPPSLL 1cs0C 529 :VDTCAAEF T0333 200 :LGDR 1cs0C 547 :YEEE T0333 204 :LPPV 1cs0C 553 :ANPS T0333 210 :RPEVAITMG 1cs0C 559 :REKIMVLGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1cs0C 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1cs0C 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1cs0C 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1cs0C 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1cs0C 647 :PLKLARA T0333 318 :VSRRGIGLV 1cs0C 654 :LEAAGVPVI T0333 327 :ST 1cs0C 664 :TS T0333 334 :ADLLRRLIG 1cs0C 666 :PDAIDRAED T0333 347 :RTAAREVREE 1cs0C 675 :RERFQHAVER T0333 363 :PAETVRRIVERIS 1cs0C 697 :AIEMAVEKAKEIG Number of specific fragments extracted= 25 number of extra gaps= 1 total=3420 Number of alignments=169 # 1cs0C read from 1cs0C/merged-good-all-a2m # found chain 1cs0C in template set Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0C)D558 Warning: unaligning (T0333)R354 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cs0C)V750 Warning: unaligning (T0333)E355 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cs0C)V750 T0333 2 :LFVSSPGI 1cs0C 12 :ILGAGPIV T0333 10 :GHL 1cs0C 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1cs0C 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDY 1cs0C 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0C 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1cs0C 112 :GVT T0333 135 :RNQSA 1cs0C 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1cs0C 479 :VGITGLNADFLRQLKRKG T0333 198 :AVLGDR 1cs0C 531 :TCAAEF T0333 205 :PPVP 1cs0C 537 :ATDT T0333 210 :RPEVAITMG 1cs0C 559 :REKIMVLGG T0333 219 :TIE 1cs0C 571 :RIG T0333 225 :FGIGA 1cs0C 574 :QGIEF T0333 230 :VEPIIAAAGEVDADFVLALGDLDI 1cs0C 582 :CVHASLALREDGYETIMVNCNPET T0333 261 :RNVRAVGWT 1cs0C 614 :DRLYFEPVT T0333 271 :LHTLLR 1cs0C 626 :VLEIVR T0333 277 :TCTAVVHHGGGGTVM 1cs0C 634 :KPKGVIVQYGGQTPL T0333 292 :TAIDAGIPQLLAPDPR 1cs0C 653 :ALEAAGVPVIGTSPDA T0333 308 :DQF 1cs0C 674 :DRE T0333 313 :TAREAVSRRG 1cs0C 677 :RFQHAVERLK T0333 323 :IGLVST 1cs0C 691 :ANATVT T0333 330 :DKVD 1cs0C 697 :AIEM T0333 334 :ADLLRRL 1cs0C 702 :VEKAKEI T0333 342 :GDESLRTAAREV 1cs0C 729 :YDEADLRRYFQT T0333 361 :P 1cs0C 799 :Y T0333 362 :TPAETVRRIVERIS 1cs0C 801 :LSQEIQDVMRQQVQ Number of specific fragments extracted= 26 number of extra gaps= 2 total=3446 Number of alignments=170 # 1cs0C read from 1cs0C/merged-good-all-a2m # found chain 1cs0C in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0C)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1cs0C)D558 T0333 1 :MLFVSSPGI 1cs0C 10 :ILILGAGPI T0333 10 :GH 1cs0C 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1cs0C 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1cs0C 51 :PATI T0333 45 :LEVVDVAPDY 1cs0C 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1cs0C 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1cs0C 112 :GV T0333 136 :N 1cs0C 114 :T T0333 138 :SAWRTRGMHRSIASFLT 1cs0C 115 :MIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1cs0C 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1cs0C 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1cs0C 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1cs0C 587 :LALREDGYETIMVNCN T0333 252 :DISPLG 1cs0C 605 :TVSTDY T0333 276 :RTC 1cs0C 611 :DTS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1cs0C 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1cs0C 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1cs0C 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1cs0C 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1cs0C 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1cs0C 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 21 number of extra gaps= 1 total=3467 Number of alignments=171 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p3dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0333 read from 1p3dA/merged-good-all-a2m # 1p3dA read from 1p3dA/merged-good-all-a2m # found chain 1p3dA in training set Warning: unaligning (T0333)A132 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0333)V133 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 T0333 3 :FVSSPGIGHL 1p3dA 21 :IHFIGIGGAG T0333 15 :LIQLAWGFRTAGHDVLIAV 1p3dA 31 :MSGIAEILLNEGYQISGSD T0333 34 :AEHADRAAAAGLEVVD 1p3dA 53 :GVVTQRLAQAGAKIYI T0333 50 :VAPDYSAVKVFEQVAKDN 1p3dA 74 :HIEGASVVVVSSAIKDDN T0333 84 :EWGVQIAAV 1p3dA 92 :PELVTSKQK T0333 93 :NRPLVDGT 1p3dA 107 :RAQMLAEI T0333 104 :VDDYR 1p3dA 115 :MRFRH T0333 110 :DLVVYEQGA 1p3dA 120 :GIAVAGTHG T0333 119 :TVGLLAADRAGVP 1p3dA 134 :AMISMIYTQAKLD T0333 134 :QRNQSAW 1p3dA 149 :FVNGGLV T0333 200 :LGDRLP 1p3dA 360 :AREGWG T0333 209 :ARPEVAITMGTIELQ 1p3dA 366 :DKRIVMIFQPHRYSR T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLDISP 1p3dA 381 :TRDLFDDFVQVLSQVDALIMLDVYAAGEAP T0333 305 :DPR 1p3dA 411 :IVG T0333 308 :DQFQHTAR 1p3dA 415 :DSKSLCRS T0333 318 :VSRRGIG 1p3dA 423 :IRNLGKV T0333 325 :LV 1p3dA 432 :IL T0333 327 :STSDKV 1p3dA 435 :SDTSQL T0333 334 :ADLLRRLI 1p3dA 441 :GDVLDQII T0333 346 :LRTAAREVREE 1p3dA 462 :VSKISRGLAES Number of specific fragments extracted= 20 number of extra gaps= 1 total=3487 Number of alignments=172 # 1p3dA read from 1p3dA/merged-good-all-a2m # found chain 1p3dA in training set Warning: unaligning (T0333)A132 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0333)V133 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 T0333 7 :PGIGHL 1p3dA 25 :GIGGAG T0333 15 :LIQLAWGFRTAGHDVLIAV 1p3dA 31 :MSGIAEILLNEGYQISGSD T0333 34 :AE 1p3dA 51 :AD T0333 38 :DRAAAAGLEVVDVAPDY 1p3dA 57 :QRLAQAGAKIYIGHAEE T0333 56 :AV 1p3dA 74 :HI T0333 65 :KDNPRFAETVATRPAIDLEEWGVQ 1p3dA 76 :EGASVVVVSSAIKDDNPELVTSKQ T0333 89 :IAA 1p3dA 107 :RAQ T0333 99 :GTMALVDDYR 1p3dA 110 :MLAEIMRFRH T0333 110 :DLVVYEQGA 1p3dA 120 :GIAVAGTHG T0333 119 :TVGLLAADRAGVP 1p3dA 134 :AMISMIYTQAKLD T0333 134 :QRNQSA 1p3dA 149 :FVNGGL T0333 140 :WRTRGMHRSIASFLTDLM 1p3dA 200 :DTYEGDFEKMKATYVKFL T0333 158 :DKHQVSLPEPVATIE 1p3dA 225 :LAVMCADDPVLMELV T0333 173 :SFPP 1p3dA 241 :KVGR T0333 191 :WVPYGGGA 1p3dA 245 :QVITYGFS T0333 205 :PPVP 1p3dA 253 :EQAD T0333 209 :ARPE 1p3dA 336 :PNGK T0333 213 :VAITMGTIE 1p3dA 341 :RLVDDYGHH T0333 223 :Q 1p3dA 350 :P T0333 225 :FGIGAVEPIIAAAGE 1p3dA 351 :TEVGVTIKAAREGWG T0333 241 :DADFVLALGDLDI 1p3dA 366 :DKRIVMIFQPHRY T0333 271 :LHTLLRTCTAVVHHG 1p3dA 388 :FVQVLSQVDALIMLD T0333 286 :GG 1p3dA 407 :GE T0333 304 :PDPR 1p3dA 410 :PIVG T0333 308 :DQF 1p3dA 415 :DSK T0333 313 :TAREAVSRRGIG 1p3dA 418 :SLCRSIRNLGKV T0333 325 :LVST 1p3dA 432 :ILVS T0333 330 :DKVD 1p3dA 436 :DTSQ T0333 334 :ADLLRRLIG 1p3dA 441 :GDVLDQIIQ T0333 359 :AL 1p3dA 450 :DG T0333 361 :PTPAETVRRIVER 1p3dA 460 :GSVSKISRGLAES Number of specific fragments extracted= 31 number of extra gaps= 1 total=3518 Number of alignments=173 # 1p3dA read from 1p3dA/merged-good-all-a2m # found chain 1p3dA in training set Warning: unaligning (T0333)A132 because of BadResidue code BAD_PEPTIDE in next template residue (1p3dA)T148 Warning: unaligning (T0333)V133 because of BadResidue code BAD_PEPTIDE at template residue (1p3dA)T148 Warning: unaligning (T0333)I374 because last residue in template chain is (1p3dA)W473 T0333 1 :MLFVSSPGIG 1p3dA 21 :IHFIGIGGAG T0333 15 :LIQLAWGFRTAGHDVLIAV 1p3dA 31 :MSGIAEILLNEGYQISGSD T0333 34 :AEHADRAAAAGLEVVDVAPDYSAVKVF 1p3dA 53 :GVVTQRLAQAGAKIYIGHAEEHIEGAS T0333 61 :EQVAKDNPRF 1p3dA 95 :VTSKQKRIPV T0333 96 :LVDGTMALVDDYRPDLVVYEQGATVGL 1p3dA 107 :RAQMLAEIMRFRHGIAVAGTHGKTTTT T0333 123 :LAADRAGVP 1p3dA 138 :MIYTQAKLD T0333 134 :QRNQSAWRTRGMHRSIASFLT 1p3dA 149 :FVNGGLVKSAGKNAHLGASRY T0333 155 :DLMDKHQVSLPEPVATIESFPPSL 1p3dA 311 :EAILEALADFQGAGRRFDQLGEFI T0333 184 :PEGWFMRWVPYGGGA 1p3dA 335 :RPNGKVRLVDDYGHH T0333 207 :VPARPEVAITMGTIELQ 1p3dA 364 :WGDKRIVMIFQPHRYSR T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLDISPLG 1p3dA 381 :TRDLFDDFVQVLSQVDALIMLDVYAAGEAPIV T0333 306 :PRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGD 1p3dA 413 :GADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQD T0333 360 :LPTPAETVRRIVER 1p3dA 459 :AGSVSKISRGLAES Number of specific fragments extracted= 13 number of extra gaps= 1 total=3531 Number of alignments=174 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f48A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f48A expands to /projects/compbio/data/pdb/1f48.pdb.gz 1f48A:# T0333 read from 1f48A/merged-good-all-a2m # 1f48A read from 1f48A/merged-good-all-a2m # adding 1f48A to template set # found chain 1f48A in template set Warning: unaligning (T0333)E185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f48A)R309 Warning: unaligning (T0333)A198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f48A)R309 Warning: unaligning (T0333)C278 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f48A)T480 T0333 2 :LFVSS 1f48A 11 :LFFTG T0333 7 :PGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAA 1f48A 17 :GGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQV T0333 44 :GLEVVDVAP 1f48A 59 :GNTIQAIAS T0333 53 :DYS 1f48A 70 :GLS T0333 58 :KVFEQVAKDNP 1f48A 152 :LLQLPGAWSSF T0333 69 :RFAETVATRPAIDL 1f48A 168 :EGASCLGPMAGLEK T0333 94 :RPLVDGTMALVD 1f48A 183 :REQYAYAVEALS T0333 106 :DYRPDLVVYEQGA 1f48A 196 :PKRTRLVLVARLQ T0333 119 :TVGLLAADRA 1f48A 210 :STLQEVARTH T0333 129 :GVP 1f48A 226 :GLK T0333 132 :AVQRNQSAW 1f48A 231 :YLVINGVLP T0333 141 :RTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLL 1f48A 244 :ANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNM T0333 180 :LEAEP 1f48A 291 :LLSTQ T0333 199 :V 1f48A 310 :P T0333 200 :LGD 1f48A 322 :IAR T0333 209 :ARPEVAITMGTIELQ 1f48A 325 :NEHGLIMLMGKGGVG T0333 226 :GIGAVEPIIAAAGEVDADFVLALGDLD 1f48A 340 :KTTMAAAIAVRLADMGFDVHLTTSDPA T0333 253 :ISPLG 1f48A 436 :IREAG T0333 261 :RNVRAVGWTP 1f48A 441 :KRFVVMDTAP T0333 271 :LHTLLRT 1f48A 454 :TLLLLDA T0333 297 :GIPQLLAPDP 1f48A 490 :RTKVLLVTLP T0333 308 :DQFQHTAR 1f48A 506 :EAANLQAD T0333 318 :VSRRGIG 1f48A 514 :LERAGIH T0333 325 :LV 1f48A 522 :WG T0333 327 :STSDKV 1f48A 535 :TRSPLL T0333 334 :ADLLRRL 1f48A 541 :RMRAQQE T0333 347 :RTAAREVREE 1f48A 548 :LPQIESVKRQ T0333 357 :MVALPTPAETVRRIV 1f48A 568 :LASEPTGIDKLKQLA Number of specific fragments extracted= 28 number of extra gaps= 0 total=3559 Number of alignments=175 # 1f48A read from 1f48A/merged-good-all-a2m # found chain 1f48A in template set T0333 2 :LFVSSPGI 1f48A 11 :LFFTGKGG T0333 10 :GHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAA 1f48A 20 :GKTSISCATAIRLAEQGKRVLLVSTDPASNVGQ T0333 43 :AGLEVVDVAPDYSAVKVFEQVAKDNP 1f48A 69 :PGLSALEIDPQAAAQQYRARIVDPIK T0333 78 :PAIDLEEWGVQ 1f48A 95 :GVLPDDVVSSI T0333 89 :IAAVNRPLVD 1f48A 120 :FDEFTGLLTD T0333 99 :GTMAL 1f48A 131 :SLLTR T0333 109 :PDLVVYEQGA 1f48A 136 :FDHIIFDTAP T0333 119 :TVGLLAAD 1f48A 147 :GHTIRLLQ T0333 136 :NQ 1f48A 155 :LP T0333 140 :WRTRGMHRSIASFLTD 1f48A 180 :EKQREQYAYAVEALSD T0333 156 :LMDKHQVSLPE 1f48A 198 :RTRLVLVARLQ T0333 167 :PVATIE 1f48A 211 :TLQEVA T0333 173 :SFP 1f48A 226 :GLK T0333 191 :WVPYGGGAVLGDRLPPVP 1f48A 229 :NQYLVINGVLPKTEAAND T0333 209 :ARPEVAITMGTIE 1f48A 325 :NEHGLIMLMGKGG T0333 223 :QAF 1f48A 338 :VGK T0333 228 :GAVEPIIAAAGEV 1f48A 341 :TTMAAAIAVRLAD T0333 241 :DADFVLALGDLDI 1f48A 355 :GFDVHLTTSDPAA T0333 254 :SPLGTLP 1f48A 437 :REAGKRF T0333 271 :LHTLLR 1f48A 481 :PMMLLQ T0333 277 :TCTAVVHHG 1f48A 490 :RTKVLLVTL T0333 286 :GGGTVMTAI 1f48A 500 :ETTPVLEAA T0333 313 :TAREAVSRRG 1f48A 509 :NLQADLERAG T0333 323 :IGLVSTS 1f48A 561 :RVALVPV T0333 330 :DKVD 1f48A 570 :SEPT T0333 334 :ADLLRRLI 1f48A 575 :IDKLKQLA Number of specific fragments extracted= 26 number of extra gaps= 0 total=3585 Number of alignments=176 # 1f48A read from 1f48A/merged-good-all-a2m # found chain 1f48A in template set Warning: unaligning (T0333)E185 because of BadResidue code BAD_PEPTIDE in next template residue (1f48A)P167 Warning: unaligning (T0333)G186 because of BadResidue code BAD_PEPTIDE at template residue (1f48A)P167 T0333 1 :MLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1f48A 11 :LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS T0333 34 :AEHADRAAA 1f48A 47 :ASNVGQVFS T0333 43 :AGLEVVDVAPDYSAVKVF 1f48A 69 :PGLSALEIDPQAAAQQYR T0333 61 :EQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMA 1f48A 88 :RIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTD T0333 103 :LVD 1f48A 132 :LLT T0333 108 :RPDLVVYEQGAT 1f48A 135 :RFDHIIFDTAPT T0333 120 :VGLLAA 1f48A 149 :TIRLLQ T0333 174 :FPPSLLLEAEP 1f48A 155 :LPGAWSSFIDS T0333 187 :WFMRWVPYGGGA 1f48A 168 :EGASCLGPMAGL T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1f48A 187 :AYAVEALSDPKRTRLVLVARLQK T0333 222 :LQAFGIGAVEPIIAA 1f48A 211 :TLQEVARTHLELAAI T0333 239 :EVDADFVLALGDLDISPL 1f48A 226 :GLKNQYLVINGVLPKTEA T0333 257 :GTLPRNV 1f48A 261 :ANLPADL T0333 267 :GWTPLHTLL 1f48A 311 :DIPSLSALV T0333 276 :RTCTAVVHHG 1f48A 325 :NEHGLIMLMG T0333 286 :GGGTVMTAI 1f48A 339 :GKTTMAAAI T0333 313 :TAREAVSRRGIGL 1f48A 348 :AVRLADMGFDVHL T0333 327 :STSDKVDADL 1f48A 384 :RIDPHEETER T0333 346 :LRTAA 1f48A 394 :YRQHV T0333 351 :REVREEMVALPTPAETV 1f48A 411 :KRLLEEDLRSPCTEEIA Number of specific fragments extracted= 20 number of extra gaps= 1 total=3605 Number of alignments=177 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l2lA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l2lA expands to /projects/compbio/data/pdb/1l2l.pdb.gz 1l2lA:# T0333 read from 1l2lA/merged-good-all-a2m # 1l2lA read from 1l2lA/merged-good-all-a2m # adding 1l2lA to template set # found chain 1l2lA in template set Warning: unaligning (T0333)H160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l2lA)E175 Warning: unaligning (T0333)P165 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l2lA)E175 T0333 14 :PLIQLAWGFRTA 1l2lA 10 :LYEKALDKVEAS T0333 26 :GHD 1l2lA 24 :KVR T0333 29 :VLIAV 1l2lA 28 :VLLAY T0333 35 :EHADRAAAAG 1l2lA 46 :DLEKRIEKVG T0333 57 :VKVFEQVAKDNPRFAE 1l2lA 56 :KEEVLRYSEELPKEIE T0333 81 :DLEEWGVQIAAVNRP 1l2lA 72 :TIPQLLGSILWSIKR T0333 98 :DGTMALVDDYRPD 1l2lA 97 :REVREYMRKWGWD T0333 119 :TVGLLAADRA 1l2lA 115 :GQVGIMANLL T0333 129 :GVPAVQRNQSAW 1l2lA 129 :GIPVIAHVPQLS T0333 149 :IA 1l2lA 167 :PR T0333 159 :K 1l2lA 169 :E T0333 166 :EPVATIESFPPSLLLEAEPEGW 1l2lA 176 :DCIHYIYEFPRNFKVLDFEAPR T0333 200 :LG 1l2lA 225 :IA T0333 209 :ARPEVAITMGTIELQA 1l2lA 227 :KRSELAIISGLHPLTQ T0333 225 :FGIGAVEPIIAAAGEVDADFVLALGDLDISPLG 1l2lA 247 :KPIKLVREHLKILNDLGIRAHLEFAFTPDEVVR T0333 269 :TPLHTLLRTCTAVVHH 1l2lA 280 :LEIVKLLKHFYSVGLN T0333 334 :ADLLRRLI 1l2lA 296 :EVELASVV T0333 342 :GDESLRTAARE 1l2lA 307 :GEKELAERIIS T0333 358 :VALP 1l2lA 318 :KDPA T0333 363 :PAETVRRIVERI 1l2lA 322 :DPIAVIEGLLKL Number of specific fragments extracted= 20 number of extra gaps= 0 total=3625 Number of alignments=178 # 1l2lA read from 1l2lA/merged-good-all-a2m # found chain 1l2lA in template set T0333 13 :FPLIQLAWGFRTA 1l2lA 9 :SLYEKALDKVEAS T0333 26 :GHDVLIAVAEHA 1l2lA 24 :KVRGVLLAYNTN T0333 50 :VAPDYSAVKVFEQVAKDNP 1l2lA 41 :YLKREDLEKRIEKVGKEEV T0333 69 :RFAETVATRPAIDLEEWGVQIAAVNR 1l2lA 61 :RYSEELPKEIETIPQLLGSILWSIKR T0333 95 :PLVDGTMALVDDYRPD 1l2lA 94 :VVSREVREYMRKWGWD T0333 115 :EQGATVGLLAADRAGVPAVQRNQSA 1l2lA 115 :GQVGIMANLLGGVYGIPVIAHVPQL T0333 142 :TRGMHRSIASF 1l2lA 212 :LYVREEWIERF T0333 153 :LTDLMDKHQVS 1l2lA 225 :IAKRSELAIIS T0333 195 :GGGAVLGDR 1l2lA 236 :GLHPLTQEN T0333 223 :QAFGIGAVEPIIAAAGEVDADFVLALGDLDI 1l2lA 245 :HGKPIKLVREHLKILNDLGIRAHLEFAFTPD T0333 271 :LHTLLRTCTAVVHH 1l2lA 282 :IVKLLKHFYSVGLN T0333 306 :PR 1l2lA 296 :EV T0333 313 :TAREAVSRRGI 1l2lA 298 :ELASVVSVMGE T0333 344 :ESLRTAARE 1l2lA 309 :KELAERIIS T0333 358 :VALPTPAETVR 1l2lA 318 :KDPADPIAVIE T0333 369 :RIVERI 1l2lA 332 :KLIKET Number of specific fragments extracted= 16 number of extra gaps= 0 total=3641 Number of alignments=179 # 1l2lA read from 1l2lA/merged-good-all-a2m # found chain 1l2lA in template set Warning: unaligning (T0333)H160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l2lA)E175 Warning: unaligning (T0333)P165 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l2lA)E175 T0333 2 :LFVSSPG 1l2lA 28 :VLLAYNT T0333 28 :DVLIAV 1l2lA 35 :NIDAIK T0333 34 :AEHADRAAAAG 1l2lA 45 :EDLEKRIEKVG T0333 57 :VKVFEQVAKDNPRFAETV 1l2lA 56 :KEEVLRYSEELPKEIETI T0333 83 :EEWGVQIAAVNRPL 1l2lA 74 :PQLLGSILWSIKRG T0333 98 :DGTMALVDDYRPD 1l2lA 97 :REVREYMRKWGWD T0333 115 :EQGATVGLLAADRAGVPAVQR 1l2lA 115 :GQVGIMANLLGGVYGIPVIAH T0333 138 :SA 1l2lA 136 :VP T0333 141 :RTRGMHRSIASFLT 1l2lA 138 :QLSELQASLFLDGP T0333 155 :DLMDK 1l2lA 165 :IHPRE T0333 166 :EPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1l2lA 176 :DCIHYIYEFPRNFKVLDFEAPRENRFIGAADDY T0333 199 :VLGDRLPPVPARPEVAITMGTIE 1l2lA 217 :EWIERFEEIAKRSELAIISGLHP T0333 222 :LQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPL 1l2lA 244 :NHGKPIKLVREHLKILNDLGIRAHLEFAFTPDEVV T0333 272 :HTLLRTCTAVVH 1l2lA 283 :VKLLKHFYSVGL T0333 329 :SDKVDADLL 1l2lA 295 :NEVELASVV T0333 339 :RLIGDESLRTAARE 1l2lA 304 :SVMGEKELAERIIS T0333 358 :VALPTPAETVR 1l2lA 318 :KDPADPIAVIE T0333 369 :RIVERIS 1l2lA 332 :KLIKETG Number of specific fragments extracted= 18 number of extra gaps= 0 total=3659 Number of alignments=180 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jbwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jbwA expands to /projects/compbio/data/pdb/1jbw.pdb.gz 1jbwA:Bad short name: CX for alphabet: pdb_atoms Bad short name: OQ1 for alphabet: pdb_atoms Bad short name: OQ2 for alphabet: pdb_atoms # T0333 read from 1jbwA/merged-good-all-a2m # 1jbwA read from 1jbwA/merged-good-all-a2m # adding 1jbwA to template set # found chain 1jbwA in template set Warning: unaligning (T0333)W268 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jbwA)R386 T0333 3 :FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAA 1jbwA 42 :IHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNER T0333 57 :VKVFEQVAKDN 1jbwA 83 :IMIDHEPIPDA T0333 81 :DLEEWGVQIAAVNRPLVDG 1jbwA 94 :ALVNAVAFVRAALERLQQQ T0333 105 :DDYRPD 1jbwA 114 :ADFNVT T0333 117 :GATVGLLAADRAGVPAVQRNQSAW 1jbwA 124 :ITALAYWYFRQRQVDVAVIEVGIG T0333 141 :RTRGMHRSIASFLTD 1jbwA 280 :EWPLTPQNIRQGLAA T0333 167 :P 1jbwA 295 :S T0333 184 :PEGWFMRWVP 1jbwA 296 :HWPARLEKIS T0333 209 :ARPEVAITMGT 1jbwA 306 :DTPLIVIDGAH T0333 226 :GIGAVEPIIAAAGEV 1jbwA 317 :NPDGINGLITALKQL T0333 241 :DADFVLALGDLD 1jbwA 335 :PITVIAGILADK T0333 269 :T 1jbwA 387 :L T0333 270 :PLHTLLRT 1jbwA 390 :SWQEALAA T0333 278 :CTAVVHHG 1jbwA 405 :QPIVITGS T0333 306 :PR 1jbwA 413 :LY T0333 312 :HTAR 1jbwA 415 :LASA T0333 318 :VS 1jbwA 419 :VR Number of specific fragments extracted= 17 number of extra gaps= 0 total=3676 Number of alignments=181 # 1jbwA read from 1jbwA/merged-good-all-a2m # found chain 1jbwA in template set Warning: unaligning (T0333)F152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jbwA)A186 Warning: unaligning (T0333)T154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jbwA)A186 Warning: unaligning (T0333)V358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jbwA)R386 T0333 3 :FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAE 1jbwA 42 :IHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP T0333 65 :KDNPRFAETVATRPAIDLEEWGVQIA 1jbwA 75 :FIMRFNERIMIDHEPIPDAALVNAVA T0333 99 :GTMALVDD 1jbwA 101 :FVRAALER T0333 107 :YRP 1jbwA 116 :FNV T0333 116 :QGATVGLLAADRAGVPAVQRNQSA 1jbwA 123 :FITALAYWYFRQRQVDVAVIEVGI T0333 140 :WRTRGMHRSIAS 1jbwA 172 :KLLGHTITAIAK T0333 155 :DLM 1jbwA 187 :GII T0333 158 :DKHQVSLPEPVATIE 1jbwA 194 :PVVTGNLVPDAAAVV T0333 173 :SF 1jbwA 216 :GS T0333 191 :WVPYGGGAVLGDRLPPVP 1jbwA 218 :QWLRFDRDFSVPKAKLHG T0333 209 :ARPEVAITMGTIE 1jbwA 306 :DTPLIVIDGAHNP T0333 225 :FGIGAVEPIIAAAGEVDADFVLALGDLDI 1jbwA 319 :DGINGLITALKQLFSQPITVIAGILADKD T0333 313 :TAREAVSR 1jbwA 350 :AMADRLTA T0333 321 :RGIGLVSTS 1jbwA 359 :FSTVYLVPV T0333 359 :ALPTPAETVRRIVE 1jbwA 387 :LKDSWQEALAASLN Number of specific fragments extracted= 15 number of extra gaps= 0 total=3691 Number of alignments=182 # 1jbwA read from 1jbwA/merged-good-all-a2m # found chain 1jbwA in template set Warning: unaligning (T0333)S329 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jbwA)R386 Warning: unaligning (T0333)V358 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jbwA)R386 T0333 2 :LFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 1jbwA 41 :YIHVTGTNGKGSAANAIAHVLEASGLTVGLYT T0333 52 :PDYSAVKVF 1jbwA 74 :PFIMRFNER T0333 83 :EEWGVQIAAVNRPLVDGTMALVDDYRPD 1jbwA 92 :DAALVNAVAFVRAALERLQQQQADFNVT T0333 116 :QGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT 1jbwA 123 :FITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVS T0333 155 :D 1jbwA 296 :H T0333 175 :PPSLLLEAEPEGWFMRWVPY 1jbwA 297 :WPARLEKISDTPLIVIDGAH T0333 226 :GIGAVEPIIAAAGEV 1jbwA 317 :NPDGINGLITALKQL T0333 241 :DADFVLALGD 1jbwA 335 :PITVIAGILA T0333 306 :PRDQFQHTAREAVSRRGIGLV 1jbwA 345 :DKDYAAMADRLTAAFSTVYLV T0333 327 :ST 1jbwA 368 :PG T0333 359 :ALPTPAETVRRIVE 1jbwA 387 :LKDSWQEALAASLN Number of specific fragments extracted= 11 number of extra gaps= 0 total=3702 Number of alignments=183 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3oA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3oA expands to /projects/compbio/data/pdb/1c3o.pdb.gz 1c3oA:Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 283, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 285, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 593, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 2557, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 2559, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 2561, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 2563, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5050, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5052, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5054, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5056, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5058, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5060, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 5062, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7269, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7271, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7273, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7275, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7277, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7279, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7281, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7550, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7552, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7554, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7556, because occupancy 0.500 <= existing 0.500 in 1c3oA Skipped atom 7558, because occupancy 0.500 <= existing 0.500 in 1c3oA # T0333 read from 1c3oA/merged-good-all-a2m # 1c3oA read from 1c3oA/merged-good-all-a2m # adding 1c3oA to template set # found chain 1c3oA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oA)D558 T0333 2 :LFVSSPGI 1c3oA 10 :ILILGAGP T0333 10 :GHL 1c3oA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oA 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEH 1c3oA 51 :PAT T0333 37 :ADR 1c3oA 58 :PEM T0333 45 :LEVVDVAP 1c3oA 61 :ADATYIEP T0333 94 :RPL 1c3oA 71 :WEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oA 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oA 112 :GVT T0333 135 :RNQSA 1c3oA 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1c3oA 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1c3oA 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1c3oA 536 :FATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oA 553 :ANPS T0333 210 :RPEVAITMGT 1c3oA 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1c3oA 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1c3oA 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1c3oA 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1c3oA 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1c3oA 647 :PLKLARA T0333 318 :VSRRGIG 1c3oA 654 :LEAAGVP T0333 325 :LVST 1c3oA 662 :IGTS T0333 334 :ADLLRRLIG 1c3oA 666 :PDAIDRAED T0333 347 :RTAAREVREE 1c3oA 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1c3oA 697 :AIEMAVEKAKEI Number of specific fragments extracted= 25 number of extra gaps= 1 total=3727 Number of alignments=184 # 1c3oA read from 1c3oA/merged-good-all-a2m # found chain 1c3oA in template set T0333 2 :LFVSSPGI 1c3oA 12 :ILGAGPIV T0333 10 :GHL 1c3oA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAA 1c3oA 28 :YSGAQACKALREEGYRVILVNSNPATIMT T0333 67 :NPRFAETVATRPAI 1c3oA 57 :DPEMADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oA 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oA 112 :GVT T0333 135 :RNQSA 1c3oA 115 :MIGAT T0333 140 :WRTRGMHRSIASFLT 1c3oA 800 :TLSQEIQDVMRQQVQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3735 Number of alignments=185 # 1c3oA read from 1c3oA/merged-good-all-a2m # found chain 1c3oA in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oA)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oA)D558 T0333 1 :MLFVSSPGI 1c3oA 10 :ILILGAGPI T0333 10 :GHL 1c3oA 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oA 28 :YSGAQACKALREEGYRVILVN T0333 34 :A 1c3oA 51 :P T0333 45 :LEVVDVAPDY 1c3oA 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oA 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1c3oA 112 :GV T0333 137 :QSAWRTRGMHRSIASFLT 1c3oA 114 :TMIGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1c3oA 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 203 :RLPPV 1c3oA 552 :EANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1c3oA 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1c3oA 587 :LALREDGYETIMVNCN T0333 251 :LDISPL 1c3oA 608 :TDYDTS T0333 279 :TAVVHHGGGGTVMTAIDAGIP 1c3oA 615 :RLYFEPVTLEDVLEIVRIEKP T0333 300 :QLLAP 1c3oA 637 :GVIVQ T0333 305 :DPRDQFQHTAREAVSRRGIGL 1c3oA 643 :GGQTPLKLARALEAAGVPVIG T0333 329 :SD 1c3oA 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1c3oA 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1c3oA 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 19 number of extra gaps= 1 total=3754 Number of alignments=186 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3oC/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3oC expands to /projects/compbio/data/pdb/1c3o.pdb.gz 1c3oC:Skipped atom 11156, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11158, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11160, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11162, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11164, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11315, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 11317, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14278, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14280, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14282, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14284, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14286, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14853, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14855, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14857, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14859, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14861, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14863, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 14865, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 15096, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 15098, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 15100, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 15102, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 15104, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 17255, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 17257, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 17259, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 17261, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 17263, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 18626, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 18628, because occupancy 0.500 <= existing 0.500 in 1c3oC Skipped atom 18630, because occupancy 0.500 <= existing 0.500 in 1c3oC # T0333 read from 1c3oC/merged-good-all-a2m # 1c3oC read from 1c3oC/merged-good-all-a2m # adding 1c3oC to template set # found chain 1c3oC in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oC)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oC)D558 T0333 2 :LFVSSPGI 1c3oC 10 :ILILGAGP T0333 10 :GHL 1c3oC 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAV 1c3oC 28 :YSGAQACKALREEGYRVILVN T0333 34 :AEHADRAAAA 1c3oC 51 :PATIMTDPEM T0333 45 :LEVVDVAP 1c3oC 61 :ADATYIEP T0333 93 :NRPL 1c3oC 70 :HWEV T0333 100 :TMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oC 74 :VRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oC 112 :GVT T0333 136 :NQSAW 1c3oC 115 :MIGAT T0333 141 :RTRGMHRSIASFLTDL 1c3oC 505 :LAGVREAEIRKLRDQY T0333 165 :PEPVATIESFPPSLL 1c3oC 521 :DLHPVYKRVDTCAAE T0333 184 :PEGWFMRWVPYGGGAV 1c3oC 536 :FATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oC 553 :ANPS T0333 210 :RPEVAITMGT 1c3oC 559 :REKIMVLGGG T0333 220 :IELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 1c3oC 572 :IGQGIEFDYCCVHASLALREDGYETIMVNCNPE T0333 275 :LRTCTAVVHHG 1c3oC 610 :YDTSDRLYFEP T0333 286 :GGGTVMTAIDAGIP 1c3oC 622 :TLEDVLEIVRIEKP T0333 300 :QLLAPDPRD 1c3oC 637 :GVIVQYGGQ T0333 309 :QFQHTAR 1c3oC 647 :PLKLARA T0333 318 :VSRRGIG 1c3oC 654 :LEAAGVP T0333 325 :LVST 1c3oC 662 :IGTS T0333 334 :ADLLRRLIG 1c3oC 666 :PDAIDRAED T0333 347 :RTAAREVREE 1c3oC 675 :RERFQHAVER T0333 363 :PAETVRRIVERI 1c3oC 697 :AIEMAVEKAKEI Number of specific fragments extracted= 24 number of extra gaps= 1 total=3778 Number of alignments=187 # 1c3oC read from 1c3oC/merged-good-all-a2m # found chain 1c3oC in template set T0333 2 :LFVSSPGI 1c3oC 12 :ILGAGPIV T0333 10 :GHL 1c3oC 21 :GQA T0333 13 :FPLIQLAWGFRTAGHDVLIAVAEHADRAAAAG 1c3oC 28 :YSGAQACKALREEGYRVILVNSNPATIMTDPE T0333 45 :LEVVDVAPDY 1c3oC 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oC 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GVP 1c3oC 112 :GVT T0333 135 :RNQSA 1c3oC 115 :MIGAT T0333 140 :WRTRGMHRSIASFLTDLM 1c3oC 800 :TLSQEIQDVMRQQVQKLA T0333 168 :VATI 1c3oC 874 :LAEQ T0333 173 :SFPPSLLL 1c3oC 878 :GVTKEVIP T0333 186 :GWFMRWVPYGGGAVLGDRLPPVP 1c3oC 886 :PYYSVKEVVLPFNKFPGVDPLLG T0333 209 :ARPEVAITM 1c3oC 941 :KHGRALLSV T0333 223 :QAFGIGAVEPIIAAAGEVDADFVL 1c3oC 950 :REGDKERVVDLAAKLLKQGFELDA T0333 255 :PLG 1c3oC 983 :EAG T0333 261 :RNVRAVGWT 1c3oC 986 :INPRLVNKV T0333 271 :LHTLLR 1c3oC 1001 :IQDRIK T0333 277 :TCTAVVHHG 1c3oC 1009 :EYTYIINTT T0333 286 :GGGTVMTAIDAGIPQ 1c3oC 1026 :SRVIRRSALQYKVHY Number of specific fragments extracted= 18 number of extra gaps= 0 total=3796 Number of alignments=188 # 1c3oC read from 1c3oC/merged-good-all-a2m # found chain 1c3oC in template set Warning: unaligning (T0333)P208 because of BadResidue code BAD_PEPTIDE in next template residue (1c3oC)D558 Warning: unaligning (T0333)A209 because of BadResidue code BAD_PEPTIDE at template residue (1c3oC)D558 T0333 1 :MLFVSSPGI 1c3oC 10 :ILILGAGPI T0333 10 :GH 1c3oC 21 :GQ T0333 12 :LFPLIQLAWGFRTAGHDVLIAV 1c3oC 27 :DYSGAQACKALREEGYRVILVN T0333 34 :AEHA 1c3oC 51 :PATI T0333 45 :LEVVDVAPDY 1c3oC 61 :ADATYIEPIH T0333 97 :VDGTMALVDDYRPDLVVYEQGATVGLLAADRA 1c3oC 71 :WEVVRKIIEKERPDAVLPTMGGQTALNCALEL T0333 129 :GV 1c3oC 112 :GV T0333 136 :NQ 1c3oC 114 :TM T0333 139 :AWRTRGMHRSIASFLT 1c3oC 116 :IGATADAIDKAEDRRR T0333 155 :DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGA 1c3oC 508 :VREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEEC T0333 204 :LPPV 1c3oC 553 :ANPS T0333 210 :RPEVAITMGTIELQAFGIGAVEPII 1c3oC 559 :REKIMVLGGGPNRIGQGIEFDYCCV T0333 235 :AAAGEVDADFVLALGD 1c3oC 587 :LALREDGYETIMVNCN T0333 251 :LDISPL 1c3oC 608 :TDYDTS T0333 262 :NVRAVGWTPLHTLL 1c3oC 614 :DRLYFEPVTLEDVL T0333 276 :RTCTAVVHHGGGGTVM 1c3oC 633 :EKPKGVIVQYGGQTPL T0333 311 :QHTAREAVSRRGIGL 1c3oC 649 :KLARALEAAGVPVIG T0333 329 :SD 1c3oC 665 :SP T0333 335 :DLLRRLIGDESLRTAAREV 1c3oC 667 :DAIDRAEDRERFQHAVERL T0333 360 :LPTPAETVRRIVER 1c3oC 695 :VTAIEMAVEKAKEI Number of specific fragments extracted= 20 number of extra gaps= 1 total=3816 Number of alignments=189 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0333//projects/compbio/experiments/protein-predict/casp7/T0333/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0333//projects/compbio/experiments/protein-predict/casp7/T0333/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0333/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0333/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0333)A19.CB, (T0333)V29.CB) [> 3.1524 = 5.2539 < 6.8301] w=1.0000 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)I31.CB) [> 4.0315 = 6.7192 < 8.7349] w=0.9096 to align # Constraint # added constraint: constraint((T0333)A19.CB, (T0333)I31.CB) [> 3.6309 = 6.0514 < 7.8669] w=0.8932 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V130.CB) [> 3.8443 = 6.4072 < 8.3294] w=0.7722 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V48.CB) [> 3.8618 = 6.4364 < 8.3673] w=0.7099 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L30.CB) [> 3.7433 = 6.2389 < 8.1106] w=0.7086 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V130.CB) [> 3.4235 = 5.7058 < 7.4175] w=0.7076 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A32.CB) [> 3.8763 = 6.4605 < 8.3987] w=0.7026 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V47.CB) [> 3.7315 = 6.2192 < 8.0849] w=0.6982 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)I31.CB) [> 3.7213 = 6.2022 < 8.0628] w=0.6965 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V113.CB) [> 3.8037 = 6.3396 < 8.2414] w=0.6912 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)P131.CB) [> 3.1216 = 5.2027 < 6.7636] w=0.6765 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)P109.CB) [> 3.5825 = 5.9708 < 7.7620] w=0.6733 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)P131.CB) [> 3.9896 = 6.6494 < 8.6442] w=0.6701 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V113.CB) [> 3.8476 = 6.4127 < 8.3365] w=0.6692 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A32.CB) [> 3.7398 = 6.2330 < 8.1029] w=0.6562 to align # Constraint # added constraint: constraint((T0333)V104.CB, (T0333)V130.CB) [> 3.7902 = 6.3170 < 8.2121] w=0.6425 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V48.CB) [> 4.1168 = 6.8614 < 8.9198] w=0.6379 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)L45.CB) [> 3.4356 = 5.7260 < 7.4438] w=0.6374 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V47.CB) [> 3.6591 = 6.0986 < 7.9282] w=0.6365 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)R135.CB) [> 3.8308 = 6.3847 < 8.3002] w=0.6344 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V112.CB) [> 3.6976 = 6.1626 < 8.0114] w=0.6308 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)D243.CB) [> 3.9436 = 6.5726 < 8.5444] w=0.6277 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V113.CB) [> 3.7339 = 6.2231 < 8.0900] w=0.6265 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)D49.CB) [> 4.0849 = 6.8082 < 8.8507] w=0.6259 to align # Constraint # added constraint: constraint((T0333)P109.CB, (T0333)V130.CB) [> 3.4295 = 5.7159 < 7.4307] w=0.6230 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)F244.CB) [> 3.9014 = 6.5023 < 8.4529] w=0.6216 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)E46.CB) [> 3.4298 = 5.7163 < 7.4311] w=0.6181 to align # Constraint # added constraint: constraint((T0333)A19.CB, (T0333)L45.CB) [> 3.2920 = 5.4866 < 7.1326] w=0.6139 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)I31.CB) [> 3.7054 = 6.1757 < 8.0284] w=0.6135 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)V245.CB) [> 3.3805 = 5.6342 < 7.3244] w=0.6095 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V245.CB) [> 3.8719 = 6.4531 < 8.3890] w=0.6043 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)A242.CB) [> 3.2994 = 5.4989 < 7.1486] w=0.6035 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V112.CB) [> 3.7829 = 6.3048 < 8.1962] w=0.6002 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A125.CB) [> 3.4799 = 5.7999 < 7.5399] w=0.5970 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L30.CB) [> 3.6366 = 6.0610 < 7.8793] w=0.5967 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V29.CB) [> 3.6810 = 6.1349 < 7.9754] w=0.5951 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V133.CB) [> 3.9717 = 6.6195 < 8.6053] w=0.5941 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)D243.CB) [> 3.2006 = 5.3343 < 6.9346] w=0.5926 to align # Constraint # added constraint: constraint((T0333)M101.CB, (T0333)A128.CB) [> 3.9889 = 6.6482 < 8.6427] w=0.5839 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)L45.CB) [> 2.9549 = 4.9248 < 6.4023] w=0.5839 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)Y107.CB) [> 3.3304 = 5.5507 < 7.2159] w=0.5764 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A132.CB) [> 3.4403 = 5.7338 < 7.4539] w=0.5761 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)A242.CB) [> 3.8879 = 6.4799 < 8.4238] w=0.5727 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V50.CB) [> 4.0745 = 6.7909 < 8.8281] w=0.5725 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V50.CB) [> 4.0010 = 6.6684 < 8.6689] w=0.5711 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)T100.CB) [> 3.8074 = 6.3457 < 8.2494] w=0.5668 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)F244.CB) [> 3.5152 = 5.8587 < 7.6164] w=0.5668 to align # Constraint # added constraint: constraint((T0333)V104.CB, (T0333)A128.CB) [> 3.8114 = 6.3522 < 8.2579] w=0.5665 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)V245.CB) [> 4.1146 = 6.8576 < 8.9149] w=0.5657 to align # Constraint # added constraint: constraint((T0333)R23.CB, (T0333)L45.CB) [> 4.0581 = 6.7635 < 8.7926] w=0.5654 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)L45.CB) [> 4.1643 = 6.9405 < 9.0226] w=0.5649 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)L246.CB) [> 3.4926 = 5.8210 < 7.5672] w=0.5602 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L111.CB) [> 3.7725 = 6.2875 < 8.1738] w=0.5591 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V133.CB) [> 3.9561 = 6.5935 < 8.5715] w=0.5580 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)P131.CB) [> 4.3339 = 7.2232 < 9.3901] w=0.5508 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V48.CB) [> 4.3866 = 7.3111 < 9.5044] w=0.5483 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)R135.CB) [> 3.9347 = 6.5579 < 8.5252] w=0.5452 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)E46.CB) [> 3.8017 = 6.3362 < 8.2371] w=0.5408 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)A247.CB) [> 3.4672 = 5.7786 < 7.5122] w=0.5371 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V113.CB) [> 3.7335 = 6.2225 < 8.0892] w=0.5368 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)A242.CB) [> 3.5632 = 5.9387 < 7.7203] w=0.5362 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A32.CB) [> 3.6591 = 6.0985 < 7.9281] w=0.5309 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)L103.CB) [> 3.6905 = 6.1508 < 7.9960] w=0.5182 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)L15.CB) [> 3.6911 = 6.1519 < 7.9974] w=0.5179 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V133.CB) [> 3.2164 = 5.3607 < 6.9689] w=0.5032 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)Q134.CB) [> 3.5655 = 5.9425 < 7.7253] w=0.5030 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)V33.CB) [> 4.2111 = 7.0185 < 9.1240] w=0.5016 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)A247.CB) [> 3.6325 = 6.0541 < 7.8703] w=0.5001 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L15.CB) [> 3.4085 = 5.6808 < 7.3851] w=0.5000 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A132.CB) [> 3.8158 = 6.3596 < 8.2675] w=0.4969 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)I31.CB) [> 4.1450 = 6.9083 < 8.9808] w=0.4954 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V33.CB) [> 3.4691 = 5.7818 < 7.5163] w=0.4929 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)D49.CB) [> 3.4225 = 5.7042 < 7.4155] w=0.4922 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)L248.CB) [> 3.1209 = 5.2014 < 6.7618] w=0.4822 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)A247.CB) [> 4.2007 = 7.0012 < 9.1015] w=0.4821 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)L246.CB) [> 4.0701 = 6.7835 < 8.8185] w=0.4818 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)Q137.CB) [> 3.2170 = 5.3616 < 6.9701] w=0.4800 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)D243.CB) [> 3.7308 = 6.2181 < 8.0835] w=0.4633 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)L103.CB) [> 4.0439 = 6.7399 < 8.7618] w=0.4632 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)F244.CB) [> 3.9485 = 6.5808 < 8.5551] w=0.4605 to align # Constraint # added constraint: constraint((T0333)I234.CB, (T0333)F244.CB) [> 3.3983 = 5.6638 < 7.3630] w=0.4585 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)L15.CB) [> 3.3822 = 5.6370 < 7.3281] w=0.4516 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V112.CB) [> 4.1290 = 6.8817 < 8.9462] w=0.4460 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)Q134.CB) [> 3.9799 = 6.6332 < 8.6232] w=0.4431 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V29.CB) [> 3.8816 = 6.4694 < 8.4102] w=0.4417 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V33.CB) [> 3.5124 = 5.8540 < 7.6102] w=0.4405 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)V33.CB) [> 3.6904 = 6.1507 < 7.9959] w=0.4399 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)L248.CB) [> 3.6296 = 6.0493 < 7.8641] w=0.4339 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)E46.CB) [> 3.7799 = 6.2998 < 8.1897] w=0.4327 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)Y114.CB) [> 3.3911 = 5.6518 < 7.3474] w=0.4269 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)G117.CA) [> 3.4770 = 5.7951 < 7.5336] w=0.4265 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)V50.CB) [> 3.6273 = 6.0454 < 7.8591] w=0.4264 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)C278.CB) [> 4.0692 = 6.7821 < 8.8167] w=0.4220 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)P109.CB) [> 3.2884 = 5.4806 < 7.1248] w=0.4217 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)V245.CB) [> 3.5869 = 5.9781 < 7.7716] w=0.4204 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V133.CB) [> 4.3209 = 7.2014 < 9.3619] w=0.4204 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)Q116.CB) [> 4.1872 = 6.9786 < 9.0722] w=0.4200 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)Y114.CB) [> 3.6554 = 6.0923 < 7.9200] w=0.4156 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)A40.CB) [> 3.8445 = 6.4074 < 8.3297] w=0.4156 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V48.CB) [> 3.1908 = 5.3180 < 6.9134] w=0.4119 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)Q137.CB) [> 4.1307 = 6.8846 < 8.9499] w=0.4101 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)A40.CB) [> 3.4236 = 5.7061 < 7.4179] w=0.4097 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)R135.CB) [> 3.4483 = 5.7471 < 7.4713] w=0.4057 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)L325.CB) [> 4.0422 = 6.7370 < 8.7581] w=0.4052 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)I233.CB) [> 3.6778 = 6.1297 < 7.9686] w=0.4036 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A32.CB) [> 4.0669 = 6.7781 < 8.8116] w=0.4017 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)I31.CB) [> 3.8555 = 6.4259 < 8.3537] w=0.4010 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)E115.CB) [> 3.2908 = 5.4847 < 7.1301] w=0.3941 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V120.CB) [> 3.5059 = 5.8432 < 7.5962] w=0.3935 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V47.CB) [> 4.0312 = 6.7187 < 8.7343] w=0.3875 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A128.CB) [> 4.2174 = 7.0290 < 9.1376] w=0.3841 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A280.CB) [> 3.7981 = 6.3301 < 8.2291] w=0.3822 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)F244.CB) [> 4.3524 = 7.2540 < 9.4302] w=0.3816 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)N136.CB) [> 4.1538 = 6.9229 < 8.9998] w=0.3787 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)A237.CB) [> 3.3168 = 5.5281 < 7.1865] w=0.3785 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)A293.CB) [> 2.9430 = 4.9049 < 6.3764] w=0.3761 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)T279.CB) [> 3.7234 = 6.2056 < 8.0673] w=0.3760 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)G249.CA) [> 3.4448 = 5.7414 < 7.4638] w=0.3739 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)Q116.CB) [> 3.9881 = 6.6468 < 8.6408] w=0.3731 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)G121.CA) [> 3.6978 = 6.1631 < 8.0120] w=0.3708 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)H283.CB) [> 3.4440 = 5.7400 < 7.4620] w=0.3701 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)V282.CB) [> 3.7833 = 6.3054 < 8.1971] w=0.3700 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)C278.CB) [> 3.3394 = 5.5656 < 7.2353] w=0.3699 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)F22.CB) [> 3.7484 = 6.2473 < 8.1215] w=0.3668 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)D110.CB) [> 3.6585 = 6.0975 < 7.9267] w=0.3665 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A247.CB) [> 4.0487 = 6.7479 < 8.7722] w=0.3664 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A124.CB) [> 3.9356 = 6.5593 < 8.5271] w=0.3656 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V282.CB) [> 3.3789 = 5.6315 < 7.3210] w=0.3639 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)I31.CB) [> 4.2085 = 7.0142 < 9.1185] w=0.3629 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L246.CB) [> 3.6300 = 6.0500 < 7.8650] w=0.3627 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L15.CB) [> 3.7173 = 6.1955 < 8.0541] w=0.3619 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)H27.CB) [> 3.3725 = 5.6208 < 7.3070] w=0.3601 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)V281.CB) [> 3.4197 = 5.6995 < 7.4093] w=0.3577 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V230.CB) [> 3.6941 = 6.1569 < 8.0040] w=0.3549 to align # Constraint # added constraint: constraint((T0333)R210.CB, (T0333)A242.CB) [> 3.9157 = 6.5261 < 8.4840] w=0.3548 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)V281.CB) [> 4.1790 = 6.9650 < 9.0546] w=0.3524 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)T279.CB) [> 3.4051 = 5.6751 < 7.3777] w=0.3518 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)C278.CB) [> 3.5478 = 5.9130 < 7.6869] w=0.3516 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)G324.CA) [> 3.8173 = 6.3622 < 8.2709] w=0.3510 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)Q134.CB) [> 4.4383 = 7.3972 < 9.6163] w=0.3494 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L248.CB) [> 4.3987 = 7.3312 < 9.5305] w=0.3490 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)G117.CA) [> 3.4613 = 5.7688 < 7.4994] w=0.3473 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)P299.CB) [> 4.1274 = 6.8790 < 8.9427] w=0.3463 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V281.CB) [> 3.9881 = 6.6469 < 8.6410] w=0.3461 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V120.CB) [> 3.9616 = 6.6027 < 8.5836] w=0.3458 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)V282.CB) [> 3.9565 = 6.5941 < 8.5724] w=0.3457 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)R264.CB) [> 3.1277 = 5.2128 < 6.7766] w=0.3454 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V29.CB) [> 3.9203 = 6.5339 < 8.4940] w=0.3447 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)Q300.CB) [> 3.0571 = 5.0953 < 6.6238] w=0.3402 to align # Constraint # added constraint: constraint((T0333)V230.CB, (T0333)L246.CB) [> 4.1670 = 6.9450 < 9.0285] w=0.3384 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)L30.CB) [> 4.0631 = 6.7718 < 8.8033] w=0.3380 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)L248.CB) [> 3.8737 = 6.4561 < 8.3930] w=0.3375 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)A303.CB) [> 3.2828 = 5.4713 < 7.1127] w=0.3343 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)L301.CB) [> 4.1038 = 6.8397 < 8.8917] w=0.3343 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)P299.CB) [> 2.9834 = 4.9723 < 6.4640] w=0.3341 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)R264.CB) [> 4.1870 = 6.9784 < 9.0719] w=0.3333 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L111.CB) [> 3.4711 = 5.7851 < 7.5207] w=0.3319 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Y114.CB) [> 3.7090 = 6.1816 < 8.0361] w=0.3305 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)A280.CB) [> 3.4800 = 5.7999 < 7.5399] w=0.3275 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)A265.CB) [> 3.0969 = 5.1615 < 6.7100] w=0.3275 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)G324.CA) [> 3.2805 = 5.4674 < 7.1076] w=0.3265 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V47.CB) [> 4.2746 = 7.1243 < 9.2616] w=0.3220 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V263.CB) [> 3.6070 = 6.0117 < 7.8152] w=0.3213 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)A132.CB) [> 4.2411 = 7.0684 < 9.1890] w=0.3208 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)D28.CB) [> 4.0897 = 6.8161 < 8.8609] w=0.3195 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A125.CB) [> 2.4111 = 4.0185 < 5.2240] w=0.3172 to align # Constraint # added constraint: constraint((T0333)M101.CB, (T0333)R127.CB) [> 3.7519 = 6.2532 < 8.1291] w=0.3160 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)L301.CB) [> 3.0835 = 5.1392 < 6.6810] w=0.3160 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)V263.CB) [> 2.7207 = 4.5345 < 5.8948] w=0.3154 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)A293.CB) [> 4.0837 = 6.8061 < 8.8480] w=0.3148 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V47.CB) [> 4.1932 = 6.9887 < 9.0853] w=0.3147 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)L18.CB) [> 3.7604 = 6.2673 < 8.1475] w=0.3142 to align # Constraint # added constraint: constraint((T0333)V97.CB, (T0333)A124.CB) [> 3.5967 = 5.9945 < 7.7929] w=0.3138 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)E115.CB) [> 3.2352 = 5.3920 < 7.0096] w=0.3135 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A19.CB) [> 3.7502 = 6.2503 < 8.1254] w=0.3130 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)L302.CB) [> 3.3582 = 5.5971 < 7.2762] w=0.3102 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)I298.CB) [> 3.0486 = 5.0810 < 6.6053] w=0.3102 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)L301.CB) [> 3.6498 = 6.0829 < 7.9078] w=0.3099 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)V266.CB) [> 3.0772 = 5.1287 < 6.6673] w=0.3097 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)R264.CB) [> 4.2441 = 7.0735 < 9.1955] w=0.3095 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)H27.CB) [> 3.2635 = 5.4392 < 7.0709] w=0.3076 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)G249.CA) [> 3.9773 = 6.6287 < 8.6174] w=0.3075 to align # Constraint # added constraint: constraint((T0333)W20.CB, (T0333)A43.CB) [> 3.6653 = 6.1089 < 7.9415] w=0.3074 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A19.CB) [> 3.6446 = 6.0744 < 7.8967] w=0.3074 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)E115.CB) [> 3.9137 = 6.5228 < 8.4796] w=0.3072 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L111.CB) [> 4.0885 = 6.8142 < 8.8585] w=0.3060 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V113.CB) [> 4.0874 = 6.8124 < 8.8561] w=0.3060 to align # Constraint # added constraint: constraint((T0333)V97.CB, (T0333)R127.CB) [> 3.4211 = 5.7018 < 7.4124] w=0.3053 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A132.CB) [> 3.9172 = 6.5287 < 8.4873] w=0.3050 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)Q137.CB) [> 4.0040 = 6.6733 < 8.6752] w=0.3042 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)A303.CB) [> 4.0948 = 6.8246 < 8.8720] w=0.3041 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)I298.CB) [> 3.8470 = 6.4117 < 8.3352] w=0.3039 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)Q300.CB) [> 3.8014 = 6.3357 < 8.2365] w=0.3036 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V266.CB) [> 4.2025 = 7.0042 < 9.1055] w=0.3035 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)V266.CB) [> 3.8921 = 6.4869 < 8.4329] w=0.3035 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)D28.CB) [> 4.0529 = 6.7548 < 8.7813] w=0.3015 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)L301.CB) [> 4.3642 = 7.2737 < 9.4558] w=0.2980 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)P299.CB) [> 4.0113 = 6.6855 < 8.6911] w=0.2980 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)Q300.CB) [> 4.2607 = 7.1012 < 9.2315] w=0.2975 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)L325.CB) [> 3.5732 = 5.9554 < 7.7420] w=0.2969 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)D250.CB) [> 3.4174 = 5.6958 < 7.4045] w=0.2958 to align # Constraint # added constraint: constraint((T0333)R210.CB, (T0333)D241.CB) [> 4.1927 = 6.9879 < 9.0843] w=0.2936 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)Q116.CB) [> 3.8749 = 6.4581 < 8.3955] w=0.2933 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)A118.CB) [> 3.0144 = 5.0240 < 6.5311] w=0.2933 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)V33.CB) [> 3.9029 = 6.5049 < 8.4564] w=0.2917 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V29.CB) [> 4.1396 = 6.8994 < 8.9692] w=0.2891 to align # Constraint # added constraint: constraint((T0333)C278.CB, (T0333)I298.CB) [> 3.4377 = 5.7295 < 7.4484] w=0.2860 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)V113.CB) [> 3.9102 = 6.5170 < 8.4721] w=0.2857 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)G267.CA) [> 3.3231 = 5.5385 < 7.2000] w=0.2853 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)V263.CB) [> 4.2321 = 7.0535 < 9.1695] w=0.2845 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)D250.CB) [> 3.4151 = 5.6918 < 7.3994] w=0.2835 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L246.CB) [> 4.5114 = 7.5190 < 9.7747] w=0.2831 to align # Constraint # added constraint: constraint((T0333)R210.CB, (T0333)D243.CB) [> 2.7758 = 4.6264 < 6.0143] w=0.2829 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)Q116.CB) [> 3.3860 = 5.6432 < 7.3362] w=0.2811 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)E115.CB) [> 3.3161 = 5.5268 < 7.1848] w=0.2800 to align # Constraint # added constraint: constraint((T0333)G285.CA, (T0333)A303.CB) [> 4.0013 = 6.6689 < 8.6695] w=0.2786 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)V326.CB) [> 3.8282 = 6.3803 < 8.2944] w=0.2785 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L18.CB) [> 3.6574 = 6.0957 < 7.9244] w=0.2774 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)E115.CB) [> 3.1617 = 5.2695 < 6.8503] w=0.2768 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)S138.CB) [> 3.5233 = 5.8722 < 7.6338] w=0.2740 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)G324.CA) [> 3.7882 = 6.3136 < 8.2077] w=0.2736 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)I323.CB) [> 4.1044 = 6.8407 < 8.8929] w=0.2728 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)G267.CA) [> 3.6602 = 6.1003 < 7.9304] w=0.2727 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)Q137.CB) [> 3.5322 = 5.8871 < 7.6532] w=0.2721 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)Q137.CB) [> 3.8876 = 6.4794 < 8.4232] w=0.2714 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)N136.CB) [> 3.5538 = 5.9230 < 7.6999] w=0.2667 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)G249.CA) [> 3.7382 = 6.2304 < 8.0995] w=0.2666 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)T279.CB) [> 2.8135 = 4.6892 < 6.0959] w=0.2664 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)C278.CB) [> 3.2308 = 5.3847 < 7.0002] w=0.2663 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)I31.CB) [> 3.7171 = 6.1952 < 8.0537] w=0.2654 to align # Constraint # added constraint: constraint((T0333)I233.CB, (T0333)F244.CB) [> 3.8665 = 6.4441 < 8.3774] w=0.2654 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)V192.CB) [> 4.0876 = 6.8127 < 8.8566] w=0.2654 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)A32.CB) [> 3.7901 = 6.3169 < 8.2119] w=0.2649 to align # Constraint # added constraint: constraint((T0333)I171.CB, (T0333)V192.CB) [> 3.2955 = 5.4924 < 7.1402] w=0.2636 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)G249.CA) [> 3.6504 = 6.0840 < 7.9092] w=0.2628 to align # Constraint # added constraint: constraint((T0333)L275.CB, (T0333)A296.CB) [> 2.9969 = 4.9948 < 6.4932] w=0.2613 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)A132.CB) [> 3.0844 = 5.1407 < 6.6829] w=0.2607 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)E115.CB) [> 3.1081 = 5.1802 < 6.7343] w=0.2603 to align # Constraint # added constraint: constraint((T0333)A37.CB, (T0333)V47.CB) [> 3.7109 = 6.1849 < 8.0404] w=0.2600 to align # Constraint # added constraint: constraint((T0333)I171.CB, (T0333)Y194.CB) [> 3.6552 = 6.0920 < 7.9196] w=0.2579 to align # Constraint # added constraint: constraint((T0333)A51.CB, (T0333)L103.CB) [> 4.1487 = 6.9146 < 8.9889] w=0.2568 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)Q116.CB) [> 3.1549 = 5.2582 < 6.8357] w=0.2567 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)G267.CA) [> 3.6859 = 6.1432 < 7.9862] w=0.2551 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)G121.CA) [> 4.0485 = 6.7475 < 8.7718] w=0.2551 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)D110.CB) [> 3.9860 = 6.6433 < 8.6363] w=0.2535 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)G121.CA) [> 3.6724 = 6.1207 < 7.9569] w=0.2526 to align # Constraint # added constraint: constraint((T0333)A51.CB, (T0333)T100.CB) [> 4.6466 = 7.7443 < 10.0676] w=0.2517 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)Q300.CB) [> 3.6680 = 6.1133 < 7.9474] w=0.2502 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)R135.CB) [> 3.6611 = 6.1018 < 7.9324] w=0.2500 to align # Constraint # added constraint: constraint((T0333)R276.CB, (T0333)A296.CB) [> 3.2952 = 5.4920 < 7.1395] w=0.2496 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)G324.CA) [> 3.8394 = 6.3989 < 8.3186] w=0.2484 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)I234.CB) [> 3.8170 = 6.3617 < 8.2702] w=0.2473 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)V230.CB) [> 3.8422 = 6.4037 < 8.3248] w=0.2472 to align # Constraint # added constraint: constraint((T0333)R23.CB, (T0333)A43.CB) [> 3.7239 = 6.2064 < 8.0683] w=0.2465 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)G129.CA) [> 4.6672 = 7.7786 < 10.1122] w=0.2455 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)V120.CB) [> 4.2619 = 7.1031 < 9.2340] w=0.2445 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)Q300.CB) [> 4.5102 = 7.5170 < 9.7721] w=0.2434 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)L302.CB) [> 4.1824 = 6.9707 < 9.0619] w=0.2431 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)H284.CB) [> 4.4350 = 7.3917 < 9.6092] w=0.2429 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)V281.CB) [> 4.4215 = 7.3692 < 9.5799] w=0.2422 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L301.CB) [> 3.2495 = 5.4159 < 7.0407] w=0.2415 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)C278.CB) [> 3.4540 = 5.7566 < 7.4836] w=0.2414 to align # Constraint # added constraint: constraint((T0333)S327.CB, (T0333)L336.CB) [> 3.1916 = 5.3193 < 6.9150] w=0.2406 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)V33.CB) [> 3.3936 = 5.6560 < 7.3528] w=0.2405 to align # Constraint # added constraint: constraint((T0333)V207.CB, (T0333)D243.CB) [> 3.6570 = 6.0951 < 7.9236] w=0.2403 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)V230.CB) [> 4.3153 = 7.1922 < 9.3498] w=0.2398 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)L302.CB) [> 3.9822 = 6.6371 < 8.6282] w=0.2381 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)L337.CB) [> 4.2021 = 7.0035 < 9.1046] w=0.2371 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)L340.CB) [> 3.4810 = 5.8016 < 7.5421] w=0.2371 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)V266.CB) [> 4.4362 = 7.3936 < 9.6117] w=0.2368 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)R135.CB) [> 4.1579 = 6.9299 < 9.0088] w=0.2357 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L30.CB) [> 4.2400 = 7.0667 < 9.1867] w=0.2342 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)V29.CB) [> 3.2545 = 5.4241 < 7.0513] w=0.2342 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)D250.CB) [> 4.1447 = 6.9079 < 8.9802] w=0.2338 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Q116.CB) [> 3.9564 = 6.5940 < 8.5722] w=0.2338 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)D126.CB) [> 4.7028 = 7.8380 < 10.1894] w=0.2336 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)G117.CA) [> 4.6208 = 7.7014 < 10.0118] w=0.2334 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)Q116.CB) [> 2.7419 = 4.5699 < 5.9408] w=0.2323 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)G117.CA) [> 3.6825 = 6.1375 < 7.9788] w=0.2323 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)G117.CA) [> 4.1641 = 6.9401 < 9.0221] w=0.2323 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)T119.CB) [> 3.6231 = 6.0385 < 7.8500] w=0.2323 to align # Constraint # added constraint: constraint((T0333)L275.CB, (T0333)T292.CB) [> 3.6409 = 6.0682 < 7.8886] w=0.2313 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)T269.CB) [> 3.3993 = 5.6655 < 7.3652] w=0.2311 to align # Constraint # added constraint: constraint((T0333)V104.CB, (T0333)A124.CB) [> 3.7796 = 6.2993 < 8.1891] w=0.2310 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)L274.CB) [> 4.0212 = 6.7021 < 8.7127] w=0.2304 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)L325.CB) [> 3.8817 = 6.4695 < 8.4103] w=0.2297 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V104.CB) [> 4.1464 = 6.9107 < 8.9839] w=0.2293 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)N136.CB) [> 4.0020 = 6.6700 < 8.6710] w=0.2290 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)Q137.CB) [> 4.1132 = 6.8553 < 8.9120] w=0.2283 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L18.CB) [> 3.5372 = 5.8954 < 7.6640] w=0.2273 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)V120.CB) [> 3.4358 = 5.7263 < 7.4442] w=0.2268 to align # Constraint # added constraint: constraint((T0333)M101.CB, (T0333)A124.CB) [> 3.2034 = 5.3390 < 6.9407] w=0.2259 to align # Constraint # added constraint: constraint((T0333)D105.CB, (T0333)A128.CB) [> 3.7249 = 6.2081 < 8.0705] w=0.2257 to align # Constraint # added constraint: constraint((T0333)L275.CB, (T0333)I298.CB) [> 3.5393 = 5.8988 < 7.6685] w=0.2251 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)V263.CB) [> 4.3850 = 7.3082 < 9.5007] w=0.2251 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)A303.CB) [> 4.1150 = 6.8583 < 8.9158] w=0.2248 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)N262.CB) [> 3.9948 = 6.6579 < 8.6553] w=0.2248 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)N262.CB) [> 3.1944 = 5.3240 < 6.9212] w=0.2248 to align # Constraint # added constraint: constraint((T0333)L275.CB, (T0333)A293.CB) [> 3.7483 = 6.2472 < 8.1214] w=0.2245 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)H284.CB) [> 3.4841 = 5.8069 < 7.5490] w=0.2245 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)W268.CB) [> 3.8016 = 6.3361 < 8.2369] w=0.2244 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)D241.CB) [> 3.9083 = 6.5139 < 8.4680] w=0.2227 to align # Constraint # added constraint: constraint((T0333)E221.CB, (T0333)D250.CB) [> 3.7570 = 6.2617 < 8.1402] w=0.2225 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V104.CB) [> 3.9508 = 6.5846 < 8.5600] w=0.2225 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)V112.CB) [> 4.2115 = 7.0192 < 9.1250] w=0.2224 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)I323.CB) [> 3.1841 = 5.3068 < 6.8989] w=0.2223 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)F22.CB) [> 3.6005 = 6.0008 < 7.8011] w=0.2220 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)A280.CB) [> 3.5942 = 5.9904 < 7.7875] w=0.2219 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)V281.CB) [> 4.1221 = 6.8702 < 8.9312] w=0.2219 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V230.CB) [> 3.4923 = 5.8205 < 7.5666] w=0.2217 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)A118.CB) [> 3.6054 = 6.0090 < 7.8116] w=0.2216 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)N136.CB) [> 4.0882 = 6.8137 < 8.8578] w=0.2206 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)G121.CA) [> 4.0880 = 6.8133 < 8.8573] w=0.2200 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)A350.CB) [> 3.2032 = 5.3386 < 6.9402] w=0.2193 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)I323.CB) [> 4.3384 = 7.2306 < 9.3998] w=0.2191 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)I298.CB) [> 4.2700 = 7.1167 < 9.2517] w=0.2191 to align # Constraint # added constraint: constraint((T0333)V104.CB, (T0333)A125.CB) [> 3.9727 = 6.6213 < 8.6076] w=0.2191 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)L340.CB) [> 3.6629 = 6.1048 < 7.9362] w=0.2188 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)R264.CB) [> 4.3642 = 7.2736 < 9.4557] w=0.2187 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)D243.CB) [> 3.7937 = 6.3228 < 8.2197] w=0.2186 to align # Constraint # added constraint: constraint((T0333)G121.CA, (T0333)A132.CB) [> 4.1721 = 6.9535 < 9.0396] w=0.2185 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)H283.CB) [> 3.9899 = 6.6498 < 8.6447] w=0.2184 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)A265.CB) [> 4.4987 = 7.4978 < 9.7472] w=0.2182 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)W268.CB) [> 3.6542 = 6.0904 < 7.9175] w=0.2182 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)V282.CB) [> 3.8778 = 6.4630 < 8.4019] w=0.2178 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)A265.CB) [> 4.6368 = 7.7280 < 10.0464] w=0.2177 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)R135.CB) [> 4.1178 = 6.8631 < 8.9220] w=0.2176 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)T277.CB) [> 3.6091 = 6.0152 < 7.8198] w=0.2175 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)V245.CB) [> 3.9163 = 6.5272 < 8.4854] w=0.2175 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V112.CB) [> 3.9117 = 6.5196 < 8.4754] w=0.2173 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)S138.CB) [> 4.0134 = 6.6889 < 8.6956] w=0.2168 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)W191.CB) [> 3.4863 = 5.8105 < 7.5536] w=0.2166 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)P109.CB) [> 4.0314 = 6.7190 < 8.7347] w=0.2166 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)D110.CB) [> 3.7180 = 6.1967 < 8.0556] w=0.2163 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)T289.CB) [> 4.0956 = 6.8260 < 8.8738] w=0.2162 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)H312.CB) [> 3.8435 = 6.4058 < 8.3275] w=0.2159 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)T279.CB) [> 3.4925 = 5.8208 < 7.5670] w=0.2158 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)G117.CA) [> 3.3809 = 5.6349 < 7.3254] w=0.2157 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)G117.CA) [> 3.6708 = 6.1180 < 7.9534] w=0.2156 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)H36.CB) [> 3.5924 = 5.9873 < 7.7835] w=0.2149 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)S138.CB) [> 4.2308 = 7.0512 < 9.1666] w=0.2146 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)H36.CB) [> 3.9818 = 6.6363 < 8.6271] w=0.2144 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)H36.CB) [> 4.0561 = 6.7602 < 8.7882] w=0.2143 to align # Constraint # added constraint: constraint((T0333)G285.CA, (T0333)L302.CB) [> 3.9800 = 6.6333 < 8.6233] w=0.2135 to align # Constraint # added constraint: constraint((T0333)A236.CB, (T0333)A334.CB) [> 3.0766 = 5.1277 < 6.6660] w=0.2133 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)S327.CB) [> 3.6752 = 6.1254 < 7.9630] w=0.2117 to align # Constraint # added constraint: constraint((T0333)F22.CB, (T0333)V113.CB) [> 4.6056 = 7.6760 < 9.9788] w=0.2109 to align # Constraint # added constraint: constraint((T0333)I234.CB, (T0333)L246.CB) [> 3.6324 = 6.0540 < 7.8702] w=0.2103 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)Q134.CB) [> 3.5656 = 5.9427 < 7.7256] w=0.2102 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)S138.CB) [> 3.5128 = 5.8546 < 7.6110] w=0.2100 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)P193.CB) [> 3.5768 = 5.9614 < 7.7498] w=0.2099 to align # Constraint # added constraint: constraint((T0333)A51.CB, (T0333)G99.CA) [> 3.7603 = 6.2672 < 8.1474] w=0.2098 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)T279.CB) [> 3.6391 = 6.0651 < 7.8847] w=0.2097 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)L301.CB) [> 4.4145 = 7.3575 < 9.5647] w=0.2097 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)A118.CB) [> 3.7512 = 6.2519 < 8.1275] w=0.2094 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A19.CB) [> 4.1095 = 6.8492 < 8.9039] w=0.2084 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)L336.CB) [> 3.3196 = 5.5327 < 7.1925] w=0.2066 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A242.CB) [> 3.6307 = 6.0511 < 7.8664] w=0.2065 to align # Constraint # added constraint: constraint((T0333)P304.CB, (T0333)V326.CB) [> 3.8187 = 6.3644 < 8.2738] w=0.2056 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)P52.CB) [> 3.4802 = 5.8003 < 7.5404] w=0.2053 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)F22.CB) [> 4.3499 = 7.2498 < 9.4247] w=0.2052 to align # Constraint # added constraint: constraint((T0333)I233.CB, (T0333)L246.CB) [> 4.1667 = 6.9444 < 9.0278] w=0.2051 to align # Constraint # added constraint: constraint((T0333)P304.CB, (T0333)S327.CB) [> 3.7977 = 6.3295 < 8.2283] w=0.2050 to align # Constraint # added constraint: constraint((T0333)G287.CA, (T0333)H312.CB) [> 3.2919 = 5.4865 < 7.1325] w=0.2046 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)V113.CB) [> 3.6283 = 6.0471 < 7.8613] w=0.2042 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)H283.CB) [> 4.0256 = 6.7094 < 8.7222] w=0.2037 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V281.CB) [> 3.5140 = 5.8566 < 7.6136] w=0.2036 to align # Constraint # added constraint: constraint((T0333)I89.CB, (T0333)V120.CB) [> 3.0601 = 5.1001 < 6.6301] w=0.2007 to align # Constraint # added constraint: constraint((T0333)G285.CA, (T0333)P304.CB) [> 3.6373 = 6.0622 < 7.8809] w=0.2007 to align # Constraint # added constraint: constraint((T0333)N93.CB, (T0333)A124.CB) [> 3.4874 = 5.8123 < 7.5560] w=0.2004 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)I323.CB) [> 3.3796 = 5.6327 < 7.3225] w=0.2000 to align # Constraint # added constraint: constraint((T0333)I233.CB, (T0333)V282.CB) [> 4.0870 = 6.8116 < 8.8551] w=0.1998 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)A280.CB) [> 4.3864 = 7.3108 < 9.5040] w=0.1997 to align # Constraint # added constraint: constraint((T0333)L325.CB, (T0333)L336.CB) [> 3.3843 = 5.6405 < 7.3327] w=0.1996 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)A34.CB) [> 3.2236 = 5.3726 < 6.9844] w=0.1987 to align # Constraint # added constraint: constraint((T0333)D53.CB, (T0333)V120.CB) [> 3.5403 = 5.9005 < 7.6706] w=0.1977 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)T279.CB) [> 3.5075 = 5.8459 < 7.5997] w=0.1976 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)V290.CB) [> 3.7538 = 6.2564 < 8.1333] w=0.1972 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)R354.CB) [> 3.4580 = 5.7634 < 7.4924] w=0.1948 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)N136.CB) [> 4.1243 = 6.8739 < 8.9360] w=0.1945 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)L274.CB) [> 4.2171 = 7.0286 < 9.1371] w=0.1943 to align # Constraint # added constraint: constraint((T0333)I234.CB, (T0333)V263.CB) [> 3.8348 = 6.3914 < 8.3088] w=0.1940 to align # Constraint # added constraint: constraint((T0333)G286.CA, (T0333)D308.CB) [> 4.3414 = 7.2357 < 9.4064] w=0.1939 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V112.CB) [> 4.1332 = 6.8886 < 8.9552] w=0.1935 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)E35.CB) [> 3.6815 = 6.1359 < 7.9767] w=0.1933 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)P109.CB) [> 2.5465 = 4.2441 < 5.5173] w=0.1932 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)F244.CB) [> 4.2445 = 7.0742 < 9.1965] w=0.1931 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)G285.CA) [> 3.9595 = 6.5992 < 8.5789] w=0.1924 to align # Constraint # added constraint: constraint((T0333)Y54.CB, (T0333)T100.CB) [> 3.9845 = 6.6408 < 8.6330] w=0.1922 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)P109.CB) [> 3.7292 = 6.2153 < 8.0799] w=0.1919 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)Y114.CB) [> 3.6057 = 6.0095 < 7.8124] w=0.1919 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Y114.CB) [> 4.1174 = 6.8624 < 8.9211] w=0.1918 to align # Constraint # added constraint: constraint((T0333)G121.CA, (T0333)Q134.CB) [> 3.9629 = 6.6048 < 8.5863] w=0.1918 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)L301.CB) [> 4.5089 = 7.5149 < 9.7693] w=0.1916 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)N136.CB) [> 3.3254 = 5.5424 < 7.2051] w=0.1913 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)H284.CB) [> 3.7262 = 6.2104 < 8.0735] w=0.1889 to align # Constraint # added constraint: constraint((T0333)L271.CB, (T0333)T292.CB) [> 4.1016 = 6.8359 < 8.8867] w=0.1889 to align # Constraint # added constraint: constraint((T0333)P109.CB, (T0333)A128.CB) [> 4.1920 = 6.9867 < 9.0827] w=0.1887 to align # Constraint # added constraint: constraint((T0333)A242.CB, (T0333)T279.CB) [> 4.1597 = 6.9328 < 9.0126] w=0.1873 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)I227.CB) [> 4.0905 = 6.8174 < 8.8626] w=0.1863 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)Q116.CB) [> 3.9908 = 6.6513 < 8.6467] w=0.1860 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A293.CB) [> 4.3835 = 7.3058 < 9.4975] w=0.1857 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)Q300.CB) [> 4.2020 = 7.0033 < 9.1043] w=0.1857 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)P299.CB) [> 2.7232 = 4.5386 < 5.9002] w=0.1856 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)A280.CB) [> 3.7615 = 6.2692 < 8.1500] w=0.1854 to align # Constraint # added constraint: constraint((T0333)F310.CB, (T0333)L337.CB) [> 3.9668 = 6.6113 < 8.5947] w=0.1846 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)Q309.CB) [> 3.6924 = 6.1540 < 8.0001] w=0.1846 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)N136.CB) [> 2.9687 = 4.9479 < 6.4322] w=0.1846 to align # Constraint # added constraint: constraint((T0333)T313.CB, (T0333)L337.CB) [> 3.7120 = 6.1867 < 8.0427] w=0.1843 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)A247.CB) [> 3.8730 = 6.4551 < 8.3916] w=0.1831 to align # Constraint # added constraint: constraint((T0333)A242.CB, (T0333)I341.CB) [> 4.0841 = 6.8069 < 8.8490] w=0.1825 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)L340.CB) [> 3.8017 = 6.3361 < 8.2370] w=0.1825 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)E115.CB) [> 3.8222 = 6.3703 < 8.2814] w=0.1821 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)A265.CB) [> 3.8767 = 6.4612 < 8.3996] w=0.1820 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)Y114.CB) [> 3.9196 = 6.5326 < 8.4924] w=0.1813 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)V318.CB) [> 3.8458 = 6.4096 < 8.3324] w=0.1809 to align # Constraint # added constraint: constraint((T0333)L340.CB, (T0333)A349.CB) [> 4.2974 = 7.1624 < 9.3111] w=0.1804 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)G285.CA) [> 3.4848 = 5.8081 < 7.5505] w=0.1802 to align # Constraint # added constraint: constraint((T0333)G285.CA, (T0333)Q309.CB) [> 3.5073 = 5.8454 < 7.5991] w=0.1801 to align # Constraint # added constraint: constraint((T0333)Y54.CB, (T0333)G99.CA) [> 3.0245 = 5.0409 < 6.5532] w=0.1800 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Y107.CB) [> 3.9755 = 6.6259 < 8.6137] w=0.1798 to align # Constraint # added constraint: constraint((T0333)P206.CB, (T0333)A296.CB) [> 3.2769 = 5.4614 < 7.0999] w=0.1795 to align # Constraint # added constraint: constraint((T0333)P206.CB, (T0333)G297.CA) [> 2.9703 = 4.9504 < 6.4356] w=0.1795 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)A303.CB) [> 3.3475 = 5.5791 < 7.2529] w=0.1795 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)H284.CB) [> 4.1054 = 6.8424 < 8.8951] w=0.1787 to align # Constraint # added constraint: constraint((T0333)V240.CB, (T0333)R338.CB) [> 4.2141 = 7.0235 < 9.1306] w=0.1767 to align # Constraint # added constraint: constraint((T0333)T100.CB, (T0333)V112.CB) [> 4.1568 = 6.9280 < 9.0064] w=0.1763 to align # Constraint # added constraint: constraint((T0333)V48.CB, (T0333)L103.CB) [> 3.6048 = 6.0080 < 7.8104] w=0.1763 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)L302.CB) [> 4.4054 = 7.3423 < 9.5450] w=0.1762 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)L271.CB) [> 3.9222 = 6.5370 < 8.4981] w=0.1761 to align # Constraint # added constraint: constraint((T0333)A25.CB, (T0333)V371.CB) [> 3.6744 = 6.1241 < 7.9613] w=0.1759 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)P304.CB) [> 3.7050 = 6.1750 < 8.0275] w=0.1758 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Y107.CB) [> 3.9392 = 6.5653 < 8.5349] w=0.1750 to align # Constraint # added constraint: constraint((T0333)I171.CB, (T0333)P193.CB) [> 3.6410 = 6.0683 < 7.8888] w=0.1749 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)V50.CB) [> 4.3667 = 7.2779 < 9.4612] w=0.1749 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)I227.CB) [> 4.3939 = 7.3231 < 9.5201] w=0.1748 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)Y194.CB) [> 3.9749 = 6.6249 < 8.6124] w=0.1744 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)L301.CB) [> 4.0841 = 6.8068 < 8.8488] w=0.1740 to align # Constraint # added constraint: constraint((T0333)R339.CB, (T0333)A349.CB) [> 3.3485 = 5.5808 < 7.2551] w=0.1739 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)Q300.CB) [> 3.1854 = 5.3090 < 6.9017] w=0.1735 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)H36.CB) [> 4.1748 = 6.9580 < 9.0453] w=0.1735 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)P299.CB) [> 3.9603 = 6.6006 < 8.5807] w=0.1734 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)H283.CB) [> 3.5720 = 5.9533 < 7.7392] w=0.1733 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V120.CB) [> 4.4008 = 7.3347 < 9.5351] w=0.1729 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)G285.CA) [> 3.8015 = 6.3358 < 8.2366] w=0.1726 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)M357.CB) [> 3.3797 = 5.6329 < 7.3227] w=0.1705 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)Q116.CB) [> 3.7634 = 6.2723 < 8.1540] w=0.1704 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)H283.CB) [> 4.2917 = 7.1528 < 9.2986] w=0.1697 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)Q134.CB) [> 3.8880 = 6.4800 < 8.4240] w=0.1696 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V33.CB) [> 3.3228 = 5.5380 < 7.1994] w=0.1691 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)G285.CA) [> 3.9622 = 6.6037 < 8.5848] w=0.1690 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)Q137.CB) [> 4.1602 = 6.9337 < 9.0138] w=0.1685 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)C278.CB) [> 3.0502 = 5.0837 < 6.6088] w=0.1679 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)A293.CB) [> 3.9111 = 6.5185 < 8.4740] w=0.1678 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L302.CB) [> 3.9984 = 6.6639 < 8.6631] w=0.1674 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)P193.CB) [> 3.3668 = 5.6113 < 7.2947] w=0.1672 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)Q137.CB) [> 3.1959 = 5.3264 < 6.9244] w=0.1670 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)R135.CB) [> 4.0460 = 6.7433 < 8.7662] w=0.1670 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)V47.CB) [> 4.5690 = 7.6151 < 9.8996] w=0.1659 to align # Constraint # added constraint: constraint((T0333)G238.CA, (T0333)N262.CB) [> 3.8220 = 6.3701 < 8.2811] w=0.1643 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)T279.CB) [> 4.0142 = 6.6903 < 8.6974] w=0.1642 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)A280.CB) [> 4.1725 = 6.9541 < 9.0403] w=0.1642 to align # Constraint # added constraint: constraint((T0333)H272.CB, (T0333)A296.CB) [> 3.9631 = 6.6052 < 8.5868] w=0.1638 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)T289.CB) [> 3.8389 = 6.3981 < 8.3175] w=0.1637 to align # Constraint # added constraint: constraint((T0333)G226.CA, (T0333)H284.CB) [> 3.7003 = 6.1672 < 8.0174] w=0.1634 to align # Constraint # added constraint: constraint((T0333)P304.CB, (T0333)L325.CB) [> 3.9117 = 6.5195 < 8.4754] w=0.1632 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)P299.CB) [> 4.0079 = 6.6799 < 8.6838] w=0.1631 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)A34.CB) [> 3.6252 = 6.0420 < 7.8546] w=0.1628 to align # Constraint # added constraint: constraint((T0333)R94.CB, (T0333)A124.CB) [> 3.5568 = 5.9280 < 7.7064] w=0.1628 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V282.CB) [> 3.9917 = 6.6528 < 8.6486] w=0.1623 to align # Constraint # added constraint: constraint((T0333)I171.CB, (T0333)G195.CA) [> 4.1921 = 6.9869 < 9.0829] w=0.1621 to align # Constraint # added constraint: constraint((T0333)L204.CB, (T0333)A296.CB) [> 3.4733 = 5.7889 < 7.5255] w=0.1613 to align # Constraint # added constraint: constraint((T0333)G287.CA, (T0333)R315.CB) [> 3.8186 = 6.3644 < 8.2737] w=0.1613 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)L302.CB) [> 2.8123 = 4.6872 < 6.0934] w=0.1613 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L301.CB) [> 3.9985 = 6.6641 < 8.6634] w=0.1612 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)P299.CB) [> 2.8063 = 4.6772 < 6.0804] w=0.1612 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)D250.CB) [> 3.8495 = 6.4158 < 8.3406] w=0.1608 to align # Constraint # added constraint: constraint((T0333)I89.CB, (T0333)G121.CA) [> 3.8540 = 6.4233 < 8.3503] w=0.1587 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)V326.CB) [> 3.8881 = 6.4801 < 8.4241] w=0.1585 to align # Constraint # added constraint: constraint((T0333)A242.CB, (T0333)N262.CB) [> 4.2500 = 7.0833 < 9.2083] w=0.1584 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)I374.CB) [> 3.8031 = 6.3385 < 8.2401] w=0.1583 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)R347.CB) [> 3.6550 = 6.0916 < 7.9191] w=0.1583 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)R135.CB) [> 4.1802 = 6.9670 < 9.0571] w=0.1582 to align # Constraint # added constraint: constraint((T0333)N93.CB, (T0333)L123.CB) [> 3.4112 = 5.6853 < 7.3909] w=0.1576 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V282.CB) [> 4.1109 = 6.8514 < 8.9069] w=0.1573 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)V192.CB) [> 3.6308 = 6.0514 < 7.8668] w=0.1573 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L274.CB) [> 3.8528 = 6.4214 < 8.3478] w=0.1572 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)H36.CB) [> 3.2432 = 5.4054 < 7.0270] w=0.1572 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)L251.CB) [> 3.6365 = 6.0607 < 7.8790] w=0.1566 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)L96.CB) [> 3.9993 = 6.6655 < 8.6652] w=0.1564 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)A229.CB) [> 3.6831 = 6.1385 < 7.9800] w=0.1563 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)V282.CB) [> 3.2746 = 5.4577 < 7.0950] w=0.1562 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)V290.CB) [> 3.7141 = 6.1902 < 8.0472] w=0.1556 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)A293.CB) [> 4.3545 = 7.2575 < 9.4348] w=0.1556 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)A37.CB) [> 3.1607 = 5.2679 < 6.8482] w=0.1554 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)V281.CB) [> 4.3869 = 7.3115 < 9.5050] w=0.1554 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)E115.CB) [> 3.9793 = 6.6321 < 8.6217] w=0.1552 to align # Constraint # added constraint: constraint((T0333)P304.CB, (T0333)L337.CB) [> 4.5670 = 7.6116 < 9.8951] w=0.1552 to align # Constraint # added constraint: constraint((T0333)A229.CB, (T0333)D305.CB) [> 2.9427 = 4.9045 < 6.3758] w=0.1552 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L302.CB) [> 4.0115 = 6.6859 < 8.6916] w=0.1552 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)P306.CB) [> 2.5222 = 4.2037 < 5.4648] w=0.1552 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)D305.CB) [> 3.8477 = 6.4128 < 8.3366] w=0.1552 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)G297.CA) [> 3.7418 = 6.2363 < 8.1072] w=0.1551 to align # Constraint # added constraint: constraint((T0333)A314.CB, (T0333)R338.CB) [> 4.1205 = 6.8675 < 8.9278] w=0.1549 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)R321.CB) [> 3.8212 = 6.3686 < 8.2792] w=0.1547 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)A237.CB) [> 4.2308 = 7.0513 < 9.1667] w=0.1528 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)V326.CB) [> 4.0028 = 6.6713 < 8.6726] w=0.1525 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)I341.CB) [> 3.7550 = 6.2583 < 8.1357] w=0.1522 to align # Constraint # added constraint: constraint((T0333)A237.CB, (T0333)V263.CB) [> 3.5430 = 5.9049 < 7.6764] w=0.1520 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)L153.CB) [> 3.4102 = 5.6836 < 7.3887] w=0.1519 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)L122.CB) [> 4.2059 = 7.0098 < 9.1128] w=0.1515 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V367.CB) [> 3.3643 = 5.6072 < 7.2894] w=0.1513 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)H36.CB) [> 4.2161 = 7.0268 < 9.1349] w=0.1512 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)E115.CB) [> 4.4771 = 7.4618 < 9.7003] w=0.1510 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A118.CB) [> 3.7060 = 6.1768 < 8.0298] w=0.1507 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A125.CB) [> 4.3845 = 7.3075 < 9.4998] w=0.1505 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)D308.CB) [> 3.7382 = 6.2304 < 8.0995] w=0.1495 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L15.CB) [> 3.8954 = 6.4923 < 8.4399] w=0.1493 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)G285.CA) [> 4.1379 = 6.8965 < 8.9654] w=0.1491 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)R307.CB) [> 3.5152 = 5.8586 < 7.6162] w=0.1491 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)D305.CB) [> 4.0306 = 6.7176 < 8.7329] w=0.1491 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)D252.CB) [> 3.7086 = 6.1811 < 8.0354] w=0.1487 to align # Constraint # added constraint: constraint((T0333)G86.CA, (T0333)V120.CB) [> 3.5357 = 5.8929 < 7.6608] w=0.1464 to align # Constraint # added constraint: constraint((T0333)F22.CB, (T0333)V371.CB) [> 4.0172 = 6.6954 < 8.7040] w=0.1462 to align # Constraint # added constraint: constraint((T0333)T100.CB, (T0333)A125.CB) [> 4.3997 = 7.3328 < 9.5326] w=0.1462 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)V353.CB) [> 3.0712 = 5.1187 < 6.6543] w=0.1461 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V112.CB) [> 4.3563 = 7.2606 < 9.4387] w=0.1458 to align # Constraint # added constraint: constraint((T0333)V92.CB, (T0333)V120.CB) [> 3.6179 = 6.0298 < 7.8387] w=0.1457 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)H160.CB) [> 3.2781 = 5.4635 < 7.1026] w=0.1454 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)L45.CB) [> 4.1134 = 6.8557 < 8.9124] w=0.1454 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)V192.CB) [> 3.7401 = 6.2335 < 8.1036] w=0.1452 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)H283.CB) [> 3.6926 = 6.1543 < 8.0006] w=0.1446 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)S327.CB) [> 3.9433 = 6.5722 < 8.5439] w=0.1446 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)H36.CB) [> 3.8433 = 6.4055 < 8.3271] w=0.1441 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)V282.CB) [> 4.0981 = 6.8302 < 8.8793] w=0.1440 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)A280.CB) [> 3.9670 = 6.6116 < 8.5951] w=0.1440 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)A280.CB) [> 4.1968 = 6.9946 < 9.0930] w=0.1440 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)Q137.CB) [> 3.1709 = 5.2848 < 6.8703] w=0.1440 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)S138.CB) [> 4.0878 = 6.8130 < 8.8569] w=0.1439 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)G297.CA) [> 4.5376 = 7.5627 < 9.8315] w=0.1436 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)V282.CB) [> 4.1585 = 6.9307 < 9.0100] w=0.1436 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)A132.CB) [> 3.9221 = 6.5368 < 8.4979] w=0.1435 to align # Constraint # added constraint: constraint((T0333)G226.CA, (T0333)P306.CB) [> 3.8229 = 6.3715 < 8.2830] w=0.1433 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)G117.CA) [> 4.3528 = 7.2547 < 9.4311] w=0.1432 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)I298.CB) [> 4.5328 = 7.5546 < 9.8210] w=0.1432 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)G228.CA) [> 3.4835 = 5.8059 < 7.5476] w=0.1431 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)T119.CB) [> 3.8742 = 6.4570 < 8.3941] w=0.1430 to align # Constraint # added constraint: constraint((T0333)I233.CB, (T0333)D305.CB) [> 3.2959 = 5.4932 < 7.1412] w=0.1430 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)L302.CB) [> 4.0833 = 6.8055 < 8.8472] w=0.1430 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)D38.CB) [> 3.6082 = 6.0137 < 7.8178] w=0.1430 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)L111.CB) [> 3.2724 = 5.4541 < 7.0903] w=0.1415 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)I374.CB) [> 3.4873 = 5.8121 < 7.5557] w=0.1402 to align # Constraint # added constraint: constraint((T0333)G297.CA, (T0333)R351.CB) [> 3.3108 = 5.5180 < 7.1734] w=0.1402 to align # Constraint # added constraint: constraint((T0333)A90.CB, (T0333)V120.CB) [> 3.4573 = 5.7622 < 7.4909] w=0.1398 to align # Constraint # added constraint: constraint((T0333)I89.CB, (T0333)T119.CB) [> 3.3556 = 5.5927 < 7.2705] w=0.1398 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)Q137.CB) [> 3.6830 = 6.1382 < 7.9797] w=0.1397 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)P14.CB) [> 4.1328 = 6.8880 < 8.9544] w=0.1396 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)T289.CB) [> 3.7561 = 6.2602 < 8.1383] w=0.1394 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)I323.CB) [> 4.3032 = 7.1719 < 9.3235] w=0.1394 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)G322.CA) [> 3.3823 = 5.6372 < 7.3284] w=0.1394 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)R135.CB) [> 3.9398 = 6.5663 < 8.5362] w=0.1392 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)L248.CB) [> 3.5494 = 5.9156 < 7.6903] w=0.1387 to align # Constraint # added constraint: constraint((T0333)T100.CB, (T0333)R127.CB) [> 4.0441 = 6.7402 < 8.7622] w=0.1385 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)E35.CB) [> 3.9262 = 6.5436 < 8.5067] w=0.1382 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)G285.CA) [> 4.0695 = 6.7825 < 8.8173] w=0.1381 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)S138.CB) [> 3.4177 = 5.6962 < 7.4050] w=0.1380 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)G195.CA) [> 3.4296 = 5.7160 < 7.4308] w=0.1379 to align # Constraint # added constraint: constraint((T0333)V230.CB, (T0333)D305.CB) [> 3.6656 = 6.1094 < 7.9422] w=0.1372 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)S138.CB) [> 4.2458 = 7.0764 < 9.1993] w=0.1368 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V113.CB) [> 3.0687 = 5.1145 < 6.6488] w=0.1354 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)P193.CB) [> 3.6302 = 6.0503 < 7.8654] w=0.1345 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)L325.CB) [> 3.8967 = 6.4946 < 8.4429] w=0.1341 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)H283.CB) [> 4.1321 = 6.8869 < 8.9529] w=0.1340 to align # Constraint # added constraint: constraint((T0333)D295.CB, (T0333)R354.CB) [> 3.9893 = 6.6488 < 8.6435] w=0.1340 to align # Constraint # added constraint: constraint((T0333)A90.CB, (T0333)L123.CB) [> 3.4994 = 5.8323 < 7.5820] w=0.1337 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)I149.CB) [> 3.8537 = 6.4228 < 8.3497] w=0.1337 to align # Constraint # added constraint: constraint((T0333)I234.CB, (T0333)L256.CB) [> 3.8001 = 6.3334 < 8.2335] w=0.1336 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V113.CB) [> 3.8808 = 6.4679 < 8.4083] w=0.1336 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)T289.CB) [> 3.8317 = 6.3861 < 8.3019] w=0.1335 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)Q161.CB) [> 3.1763 = 5.2939 < 6.8820] w=0.1333 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)G322.CA) [> 4.0163 = 6.6939 < 8.7021] w=0.1333 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)K159.CB) [> 3.3085 = 5.5142 < 7.1684] w=0.1332 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)Q161.CB) [> 3.8664 = 6.4440 < 8.3772] w=0.1332 to align # Constraint # added constraint: constraint((T0333)R94.CB, (T0333)A128.CB) [> 3.4930 = 5.8216 < 7.5681] w=0.1328 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)G324.CA) [> 4.4062 = 7.3436 < 9.5467] w=0.1327 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)H284.CB) [> 3.6327 = 6.0546 < 7.8709] w=0.1325 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)G196.CA) [> 3.7313 = 6.2189 < 8.0846] w=0.1323 to align # Constraint # added constraint: constraint((T0333)S327.CB, (T0333)L337.CB) [> 3.8023 = 6.3372 < 8.2383] w=0.1316 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)Q300.CB) [> 4.4681 = 7.4468 < 9.6809] w=0.1311 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)D110.CB) [> 3.8579 = 6.4299 < 8.3589] w=0.1293 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)P193.CB) [> 3.6710 = 6.1184 < 7.9539] w=0.1284 to align # Constraint # added constraint: constraint((T0333)S163.CB, (T0333)G195.CA) [> 3.6608 = 6.1013 < 7.9317] w=0.1283 to align # Constraint # added constraint: constraint((T0333)R276.CB, (T0333)I298.CB) [> 3.9648 = 6.6080 < 8.5904] w=0.1280 to align # Constraint # added constraint: constraint((T0333)A236.CB, (T0333)L337.CB) [> 3.5878 = 5.9796 < 7.7735] w=0.1280 to align # Constraint # added constraint: constraint((T0333)I89.CB, (T0333)A124.CB) [> 3.5903 = 5.9839 < 7.7790] w=0.1279 to align # Constraint # added constraint: constraint((T0333)H272.CB, (T0333)T292.CB) [> 3.5660 = 5.9434 < 7.7264] w=0.1279 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)I149.CB) [> 3.5104 = 5.8506 < 7.6058] w=0.1276 to align # Constraint # added constraint: constraint((T0333)K159.CB, (T0333)W191.CB) [> 3.5666 = 5.9443 < 7.7276] w=0.1276 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)H160.CB) [> 4.1141 = 6.8568 < 8.9138] w=0.1275 to align # Constraint # added constraint: constraint((T0333)H27.CB, (T0333)D110.CB) [> 3.1420 = 5.2366 < 6.8076] w=0.1275 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)Y114.CB) [> 3.1625 = 5.2708 < 6.8521] w=0.1275 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V112.CB) [> 3.2354 = 5.3924 < 7.0101] w=0.1275 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)T328.CB) [> 4.1505 = 6.9176 < 8.9929] w=0.1275 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)Q161.CB) [> 3.9534 = 6.5890 < 8.5657] w=0.1272 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)Q161.CB) [> 3.9908 = 6.6513 < 8.6467] w=0.1271 to align # Constraint # added constraint: constraint((T0333)G21.CA, (T0333)V367.CB) [> 3.3432 = 5.5721 < 7.2437] w=0.1269 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L271.CB) [> 3.9621 = 6.6035 < 8.5846] w=0.1269 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)I323.CB) [> 4.5845 = 7.6409 < 9.9331] w=0.1268 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)C278.CB) [> 3.9881 = 6.6469 < 8.6409] w=0.1267 to align # Constraint # added constraint: constraint((T0333)L325.CB, (T0333)L340.CB) [> 3.7747 = 6.2911 < 8.1785] w=0.1265 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)R321.CB) [> 4.4248 = 7.3747 < 9.5871] w=0.1262 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A237.CB) [> 3.8138 = 6.3563 < 8.2632] w=0.1261 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)A293.CB) [> 3.3366 = 5.5609 < 7.2292] w=0.1259 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)Q137.CB) [> 4.1573 = 6.9288 < 9.0074] w=0.1258 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)V133.CB) [> 4.3045 = 7.1741 < 9.3263] w=0.1251 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)G195.CA) [> 3.9633 = 6.6055 < 8.5872] w=0.1222 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)V192.CB) [> 4.0373 = 6.7288 < 8.7474] w=0.1222 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)A350.CB) [> 3.7676 = 6.2793 < 8.1632] w=0.1219 to align # Constraint # added constraint: constraint((T0333)G195.CA, (T0333)T366.CB) [> 3.3128 = 5.5214 < 7.1778] w=0.1219 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)N136.CB) [> 3.9563 = 6.5938 < 8.5720] w=0.1217 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)L156.CB) [> 3.2145 = 5.3575 < 6.9647] w=0.1217 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)Q134.CB) [> 4.5154 = 7.5257 < 9.7834] w=0.1217 to align # Constraint # added constraint: constraint((T0333)G238.CA, (T0333)V263.CB) [> 4.1421 = 6.9036 < 8.9746] w=0.1217 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)I149.CB) [> 3.8005 = 6.3342 < 8.2345] w=0.1216 to align # Constraint # added constraint: constraint((T0333)P131.CB, (T0333)D158.CB) [> 3.1562 = 5.2604 < 6.8384] w=0.1216 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)I341.CB) [> 3.8136 = 6.3560 < 8.2628] w=0.1215 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)M157.CB) [> 3.0233 = 5.0388 < 6.5504] w=0.1215 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)P109.CB) [> 3.8054 = 6.3423 < 8.2450] w=0.1214 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)W268.CB) [> 4.1021 = 6.8369 < 8.8880] w=0.1213 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V113.CB) [> 3.9308 = 6.5513 < 8.5167] w=0.1212 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)V162.CB) [> 3.5596 = 5.9326 < 7.7124] w=0.1211 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)I370.CB) [> 3.9134 = 6.5223 < 8.4790] w=0.1209 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)A32.CB) [> 3.5973 = 5.9955 < 7.7942] w=0.1209 to align # Constraint # added constraint: constraint((T0333)H27.CB, (T0333)V371.CB) [> 4.2153 = 7.0255 < 9.1332] w=0.1207 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)G117.CA) [> 3.6385 = 6.0641 < 7.8834] w=0.1198 to align # Constraint # added constraint: constraint((T0333)G297.CA, (T0333)R354.CB) [> 3.0130 = 5.0216 < 6.5281] w=0.1159 to align # Constraint # added constraint: constraint((T0333)I323.CB, (T0333)A350.CB) [> 3.5011 = 5.8352 < 7.5858] w=0.1159 to align # Constraint # added constraint: constraint((T0333)A237.CB, (T0333)L337.CB) [> 3.7533 = 6.2555 < 8.1321] w=0.1159 to align # Constraint # added constraint: constraint((T0333)G197.CA, (T0333)M291.CB) [> 3.7438 = 6.2397 < 8.1116] w=0.1158 to align # Constraint # added constraint: constraint((T0333)L96.CB, (T0333)V120.CB) [> 3.2959 = 5.4932 < 7.1411] w=0.1157 to align # Constraint # added constraint: constraint((T0333)L271.CB, (T0333)T289.CB) [> 4.0963 = 6.8272 < 8.8753] w=0.1157 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)T277.CB) [> 4.0690 = 6.7818 < 8.8163] w=0.1156 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V281.CB) [> 4.0854 = 6.8090 < 8.8517] w=0.1156 to align # Constraint # added constraint: constraint((T0333)K159.CB, (T0333)P193.CB) [> 4.1509 = 6.9181 < 8.9935] w=0.1156 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)G195.CA) [> 3.8385 = 6.3975 < 8.3167] w=0.1156 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)D158.CB) [> 3.7894 = 6.3158 < 8.2105] w=0.1155 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)D158.CB) [> 3.4287 = 5.7145 < 7.4289] w=0.1155 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)K159.CB) [> 4.1510 = 6.9184 < 8.9939] w=0.1154 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)L325.CB) [> 3.4599 = 5.7665 < 7.4964] w=0.1154 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)L111.CB) [> 4.2501 = 7.0835 < 9.2086] w=0.1153 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)V318.CB) [> 3.8263 = 6.3772 < 8.2903] w=0.1153 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)G286.CA) [> 3.7637 = 6.2728 < 8.1547] w=0.1152 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)S163.CB) [> 3.9932 = 6.6553 < 8.6518] w=0.1149 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)A303.CB) [> 3.7398 = 6.2330 < 8.1029] w=0.1147 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)Q134.CB) [> 3.3318 = 5.5530 < 7.2189] w=0.1146 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)D305.CB) [> 3.5417 = 5.9029 < 7.6737] w=0.1146 to align # Constraint # added constraint: constraint((T0333)V168.CB, (T0333)Y194.CB) [> 3.5695 = 5.9492 < 7.7339] w=0.1144 to align # Constraint # added constraint: constraint((T0333)T170.CB, (T0333)V192.CB) [> 3.7704 = 6.2840 < 8.1693] w=0.1144 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)V281.CB) [> 3.3861 = 5.6435 < 7.3366] w=0.1142 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)V318.CB) [> 4.3747 = 7.2911 < 9.4784] w=0.1142 to align # Constraint # added constraint: constraint((T0333)T170.CB, (T0333)W191.CB) [> 3.2719 = 5.4532 < 7.0891] w=0.1140 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)H284.CB) [> 4.3039 = 7.1732 < 9.3252] w=0.1140 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)H284.CB) [> 3.6260 = 6.0434 < 7.8564] w=0.1140 to align # Constraint # added constraint: constraint((T0333)L156.CB, (T0333)E166.CB) [> 2.9715 = 4.9526 < 6.4384] w=0.1140 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Q116.CB) [> 3.7005 = 6.1676 < 8.0178] w=0.1139 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)H283.CB) [> 3.9488 = 6.5813 < 8.5557] w=0.1132 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)V282.CB) [> 3.1228 = 5.2046 < 6.7660] w=0.1132 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)V281.CB) [> 3.0286 = 5.0476 < 6.5619] w=0.1132 to align # Constraint # added constraint: constraint((T0333)M189.CB, (T0333)A280.CB) [> 2.9399 = 4.8998 < 6.3698] w=0.1132 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)Y194.CB) [> 3.9580 = 6.5967 < 8.5757] w=0.1101 to align # Constraint # added constraint: constraint((T0333)S163.CB, (T0333)G196.CA) [> 3.1865 = 5.3108 < 6.9041] w=0.1100 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)V290.CB) [> 4.4479 = 7.4131 < 9.6371] w=0.1098 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)G288.CA) [> 4.3597 = 7.2661 < 9.4459] w=0.1096 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)L156.CB) [> 3.8912 = 6.4854 < 8.4311] w=0.1095 to align # Constraint # added constraint: constraint((T0333)F225.CB, (T0333)H284.CB) [> 3.6312 = 6.0521 < 7.8677] w=0.1093 to align # Constraint # added constraint: constraint((T0333)D250.CB, (T0333)G267.CA) [> 4.0535 = 6.7558 < 8.7825] w=0.1093 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)D305.CB) [> 3.7277 = 6.2129 < 8.0767] w=0.1093 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)A118.CB) [> 4.2954 = 7.1590 < 9.3068] w=0.1091 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)A56.CB) [> 3.6791 = 6.1318 < 7.9714] w=0.1091 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)L246.CB) [> 4.3063 = 7.1771 < 9.3303] w=0.1091 to align # Constraint # added constraint: constraint((T0333)A25.CB, (T0333)V367.CB) [> 3.6151 = 6.0251 < 7.8327] w=0.1090 to align # Constraint # added constraint: constraint((T0333)E221.CB, (T0333)L251.CB) [> 3.7300 = 6.2167 < 8.0817] w=0.1090 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)W191.CB) [> 3.5067 = 5.8446 < 7.5979] w=0.1089 to align # Constraint # added constraint: constraint((T0333)V63.CB, (T0333)Q88.CB) [> 4.0203 = 6.7005 < 8.7107] w=0.1088 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)H283.CB) [> 4.5690 = 7.6149 < 9.8994] w=0.1088 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V50.CB) [> 3.6079 = 6.0132 < 7.8171] w=0.1086 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)R190.CB) [> 3.8417 = 6.4029 < 8.3237] w=0.1084 to align # Constraint # added constraint: constraint((T0333)E221.CB, (T0333)V230.CB) [> 4.3052 = 7.1753 < 9.3279] w=0.1082 to align # Constraint # added constraint: constraint((T0333)L360.CB, (T0333)R369.CB) [> 3.4715 = 5.7859 < 7.5217] w=0.1081 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)Y114.CB) [> 4.4033 = 7.3389 < 9.5406] w=0.1080 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)Y114.CB) [> 3.7730 = 6.2883 < 8.1748] w=0.1078 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)A150.CB) [> 3.7278 = 6.2129 < 8.0768] w=0.1076 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)V318.CB) [> 4.4269 = 7.3782 < 9.5916] w=0.1075 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)P306.CB) [> 3.0661 = 5.1101 < 6.6431] w=0.1074 to align # Constraint # added constraint: constraint((T0333)V168.CB, (T0333)G195.CA) [> 3.3061 = 5.5101 < 7.1632] w=0.1073 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)H283.CB) [> 3.3844 = 5.6406 < 7.3328] w=0.1072 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)V281.CB) [> 4.1516 = 6.9193 < 8.9951] w=0.1072 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)T76.CB) [> 3.5670 = 5.9451 < 7.7286] w=0.1072 to align # Constraint # added constraint: constraint((T0333)I234.CB, (T0333)T277.CB) [> 3.1487 = 5.2478 < 6.8222] w=0.1071 to align # Constraint # added constraint: constraint((T0333)L275.CB, (T0333)T289.CB) [> 4.5234 = 7.5391 < 9.8008] w=0.1045 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)P193.CB) [> 4.0879 = 6.8132 < 8.8572] w=0.1042 to align # Constraint # added constraint: constraint((T0333)L164.CB, (T0333)G196.CA) [> 3.8034 = 6.3389 < 8.2406] w=0.1040 to align # Constraint # added constraint: constraint((T0333)S163.CB, (T0333)Y194.CB) [> 4.0736 = 6.7894 < 8.8262] w=0.1040 to align # Constraint # added constraint: constraint((T0333)W85.CB, (T0333)V120.CB) [> 3.6715 = 6.1192 < 7.9550] w=0.1039 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)M291.CB) [> 3.4226 = 5.7043 < 7.4156] w=0.1037 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)A198.CB) [> 3.8063 = 6.3439 < 8.2470] w=0.1037 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)L346.CB) [> 3.4856 = 5.8093 < 7.5521] w=0.1037 to align # Constraint # added constraint: constraint((T0333)G324.CA, (T0333)A350.CB) [> 3.7524 = 6.2540 < 8.1302] w=0.1037 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)V133.CB) [> 4.1670 = 6.9450 < 9.0285] w=0.1036 to align # Constraint # added constraint: constraint((T0333)D295.CB, (T0333)M357.CB) [> 3.5218 = 5.8697 < 7.6306] w=0.1036 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)R135.CB) [> 4.0225 = 6.7042 < 8.7154] w=0.1035 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)L153.CB) [> 3.3430 = 5.5716 < 7.2431] w=0.1035 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)R373.CB) [> 4.0396 = 6.7327 < 8.7525] w=0.1035 to align # Constraint # added constraint: constraint((T0333)D158.CB, (T0333)W191.CB) [> 3.6711 = 6.1185 < 7.9540] w=0.1034 to align # Constraint # added constraint: constraint((T0333)I253.CB, (T0333)A265.CB) [> 3.7690 = 6.2818 < 8.1663] w=0.1034 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)L153.CB) [> 3.5132 = 5.8554 < 7.6120] w=0.1033 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)M157.CB) [> 3.8824 = 6.4707 < 8.4119] w=0.1033 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)L111.CB) [> 4.5317 = 7.5529 < 9.8187] w=0.1032 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)L45.CB) [> 4.3993 = 7.3321 < 9.5317] w=0.1032 to align # Constraint # added constraint: constraint((T0333)E231.CB, (T0333)L256.CB) [> 3.7897 = 6.3161 < 8.2109] w=0.1032 to align # Constraint # added constraint: constraint((T0333)F225.CB, (T0333)L248.CB) [> 4.2657 = 7.1096 < 9.2425] w=0.1032 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)I149.CB) [> 3.8033 = 6.3388 < 8.2404] w=0.1032 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)E115.CB) [> 4.1057 = 6.8428 < 8.8957] w=0.1031 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)Q134.CB) [> 4.1738 = 6.9563 < 9.0432] w=0.1031 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)S327.CB) [> 3.5135 = 5.8558 < 7.6125] w=0.1030 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)I171.CB) [> 3.6397 = 6.0662 < 7.8860] w=0.1030 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)A56.CB) [> 4.0416 = 6.7361 < 8.7569] w=0.1020 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)L204.CB) [> 3.6974 = 6.1623 < 8.0110] w=0.1018 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)E35.CB) [> 3.2535 = 5.4225 < 7.0493] w=0.1018 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)P306.CB) [> 4.2623 = 7.1038 < 9.2350] w=0.1016 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)Q137.CB) [> 4.1118 = 6.8529 < 8.9088] w=0.1016 to align # Constraint # added constraint: constraint((T0333)P175.CB, (T0333)F188.CB) [> 3.7130 = 6.1883 < 8.0447] w=0.1015 to align # Constraint # added constraint: constraint((T0333)P175.CB, (T0333)R190.CB) [> 3.4763 = 5.7939 < 7.5321] w=0.1013 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)A75.CB) [> 3.7727 = 6.2879 < 8.1743] w=0.1012 to align # Constraint # added constraint: constraint((T0333)A235.CB, (T0333)T277.CB) [> 4.1998 = 6.9997 < 9.0997] w=0.1011 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)H36.CB) [> 3.3832 = 5.6387 < 7.3303] w=0.1004 to align # Constraint # added constraint: constraint((T0333)P232.CB, (T0333)S329.CB) [> 3.1004 = 5.1673 < 6.7175] w=0.0976 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)T292.CB) [> 3.6948 = 6.1581 < 8.0055] w=0.0976 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)G288.CA) [> 3.8880 = 6.4800 < 8.4240] w=0.0976 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)G197.CA) [> 4.2332 = 7.0554 < 9.1720] w=0.0976 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)A198.CB) [> 3.3100 = 5.5166 < 7.1716] w=0.0976 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V59.CB) [> 3.3766 = 5.6276 < 7.3159] w=0.0976 to align # Constraint # added constraint: constraint((T0333)L164.CB, (T0333)Y194.CB) [> 3.9244 = 6.5406 < 8.5028] w=0.0976 to align # Constraint # added constraint: constraint((T0333)F22.CB, (T0333)I370.CB) [> 4.3235 = 7.2058 < 9.3676] w=0.0974 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)M157.CB) [> 3.0409 = 5.0681 < 6.5886] w=0.0973 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)I374.CB) [> 3.4446 = 5.7410 < 7.4632] w=0.0973 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V112.CB) [> 4.3007 = 7.1679 < 9.3183] w=0.0972 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)Q134.CB) [> 3.7493 = 6.2488 < 8.1235] w=0.0972 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V113.CB) [> 4.2289 = 7.0482 < 9.1627] w=0.0971 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)E115.CB) [> 3.4758 = 5.7929 < 7.5308] w=0.0970 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V245.CB) [> 4.4043 = 7.3404 < 9.5426] w=0.0969 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)V266.CB) [> 4.0425 = 6.7375 < 8.7587] w=0.0967 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)T366.CB) [> 4.0321 = 6.7201 < 8.7361] w=0.0964 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)Q137.CB) [> 3.7657 = 6.2761 < 8.1589] w=0.0964 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V57.CB) [> 4.1901 = 6.9834 < 9.0784] w=0.0962 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)A139.CB) [> 3.8572 = 6.4287 < 8.3573] w=0.0962 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V50.CB) [> 4.0396 = 6.7326 < 8.7524] w=0.0961 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)A118.CB) [> 4.6044 = 7.6739 < 9.9761] w=0.0960 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)E35.CB) [> 4.1636 = 6.9393 < 9.0211] w=0.0959 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)R141.CB) [> 3.2424 = 5.4041 < 7.0253] w=0.0958 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)E221.CB) [> 4.4734 = 7.4556 < 9.6923] w=0.0957 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)V120.CB) [> 3.6213 = 6.0355 < 7.8462] w=0.0956 to align # Constraint # added constraint: constraint((T0333)V168.CB, (T0333)G196.CA) [> 4.0146 = 6.6910 < 8.6983] w=0.0956 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)Q137.CB) [> 2.9397 = 4.8995 < 6.3693] w=0.0956 to align # Constraint # added constraint: constraint((T0333)F188.CB, (T0333)L204.CB) [> 4.3286 = 7.2143 < 9.3786] w=0.0955 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)N67.CB) [> 3.6855 = 6.1425 < 7.9852] w=0.0954 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)A139.CB) [> 3.2321 = 5.3868 < 7.0029] w=0.0954 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)S138.CB) [> 4.1646 = 6.9411 < 9.0234] w=0.0953 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)R77.CB) [> 3.6671 = 6.1119 < 7.9455] w=0.0951 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)Y194.CB) [> 3.4601 = 5.7668 < 7.4968] w=0.0921 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V59.CB) [> 3.8544 = 6.4240 < 8.3512] w=0.0917 to align # Constraint # added constraint: constraint((T0333)G322.CA, (T0333)A349.CB) [> 3.9011 = 6.5019 < 8.4525] w=0.0915 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)D295.CB) [> 3.7216 = 6.2026 < 8.0634] w=0.0915 to align # Constraint # added constraint: constraint((T0333)E239.CB, (T0333)A334.CB) [> 3.4724 = 5.7874 < 7.5236] w=0.0915 to align # Constraint # added constraint: constraint((T0333)G286.CA, (T0333)R307.CB) [> 3.6993 = 6.1656 < 8.0152] w=0.0915 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)W191.CB) [> 3.9075 = 6.5126 < 8.4663] w=0.0915 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)V282.CB) [> 4.3226 = 7.2044 < 9.3657] w=0.0914 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)A56.CB) [> 3.8463 = 6.4105 < 8.3337] w=0.0914 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)V33.CB) [> 3.4595 = 5.7659 < 7.4956] w=0.0914 to align # Constraint # added constraint: constraint((T0333)A237.CB, (T0333)A334.CB) [> 3.4715 = 5.7858 < 7.5215] w=0.0914 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)F152.CB) [> 3.3784 = 5.6307 < 7.3199] w=0.0914 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Q134.CB) [> 3.7412 = 6.2353 < 8.1059] w=0.0914 to align # Constraint # added constraint: constraint((T0333)A25.CB, (T0333)R368.CB) [> 3.5589 = 5.9314 < 7.7109] w=0.0914 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)A303.CB) [> 4.1905 = 6.9842 < 9.0794] w=0.0913 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)R135.CB) [> 3.7219 = 6.2032 < 8.0641] w=0.0913 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)L274.CB) [> 3.9214 = 6.5357 < 8.4964] w=0.0912 to align # Constraint # added constraint: constraint((T0333)S163.CB, (T0333)G197.CA) [> 3.6131 = 6.0219 < 7.8285] w=0.0912 to align # Constraint # added constraint: constraint((T0333)K159.CB, (T0333)V192.CB) [> 3.8496 = 6.4159 < 8.3407] w=0.0912 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)F152.CB) [> 3.7120 = 6.1867 < 8.0428] w=0.0912 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)I149.CB) [> 3.6672 = 6.1120 < 7.9456] w=0.0912 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L18.CB) [> 3.8004 = 6.3340 < 8.2343] w=0.0911 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)G196.CA) [> 4.1688 = 6.9481 < 9.0325] w=0.0911 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)H160.CB) [> 4.0803 = 6.8006 < 8.8407] w=0.0911 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)E172.CB) [> 3.2626 = 5.4377 < 7.0690] w=0.0910 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)V168.CB) [> 3.4650 = 5.7750 < 7.5075] w=0.0910 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)K159.CB) [> 4.0840 = 6.8067 < 8.8488] w=0.0909 to align # Constraint # added constraint: constraint((T0333)I294.CB, (T0333)G324.CA) [> 4.5236 = 7.5394 < 9.8012] w=0.0907 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)S163.CB) [> 3.6396 = 6.0660 < 7.8858] w=0.0906 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)A139.CB) [> 4.2466 = 7.0776 < 9.2009] w=0.0905 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V57.CB) [> 3.9919 = 6.6531 < 8.6490] w=0.0903 to align # Constraint # added constraint: constraint((T0333)I227.CB, (T0333)L256.CB) [> 3.6501 = 6.0834 < 7.9085] w=0.0902 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)E35.CB) [> 4.5957 = 7.6595 < 9.9573] w=0.0900 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)L271.CB) [> 3.0459 = 5.0764 < 6.5994] w=0.0900 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)R190.CB) [> 3.7871 = 6.3118 < 8.2054] w=0.0899 to align # Constraint # added constraint: constraint((T0333)L153.CB, (T0333)E166.CB) [> 2.9067 = 4.8444 < 6.2978] w=0.0896 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)V318.CB) [> 4.0757 = 6.7928 < 8.8306] w=0.0896 to align # Constraint # added constraint: constraint((T0333)L153.CB, (T0333)P167.CB) [> 3.8966 = 6.4944 < 8.4427] w=0.0896 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)H146.CB) [> 3.3105 = 5.5174 < 7.1726] w=0.0896 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)V318.CB) [> 4.0382 = 6.7304 < 8.7495] w=0.0896 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)P306.CB) [> 3.3752 = 5.6254 < 7.3130] w=0.0894 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)A280.CB) [> 4.3574 = 7.2624 < 9.4411] w=0.0893 to align # Constraint # added constraint: constraint((T0333)D155.CB, (T0333)P165.CB) [> 4.2453 = 7.0754 < 9.1980] w=0.0892 to align # Constraint # added constraint: constraint((T0333)I227.CB, (T0333)P306.CB) [> 4.1600 = 6.9334 < 9.0134] w=0.0891 to align # Constraint # added constraint: constraint((T0333)L222.CB, (T0333)R307.CB) [> 3.1979 = 5.3299 < 6.9288] w=0.0891 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)T277.CB) [> 3.8230 = 6.3717 < 8.2831] w=0.0891 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)S138.CB) [> 4.1882 = 6.9804 < 9.0745] w=0.0882 to align # Constraint # added constraint: constraint((T0333)I323.CB, (T0333)V353.CB) [> 3.1998 = 5.3330 < 6.9330] w=0.0854 to align # Constraint # added constraint: constraint((T0333)V326.CB, (T0333)L336.CB) [> 3.6554 = 6.0923 < 7.9200] w=0.0854 to align # Constraint # added constraint: constraint((T0333)G197.CA, (T0333)P363.CB) [> 3.6270 = 6.0450 < 7.8585] w=0.0854 to align # Constraint # added constraint: constraint((T0333)I298.CB, (T0333)A350.CB) [> 3.6612 = 6.1020 < 7.9325] w=0.0854 to align # Constraint # added constraint: constraint((T0333)V92.CB, (T0333)T119.CB) [> 3.2795 = 5.4659 < 7.1057] w=0.0853 to align # Constraint # added constraint: constraint((T0333)Q17.CB, (T0333)P363.CB) [> 3.4900 = 5.8167 < 7.5617] w=0.0853 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)I370.CB) [> 4.0357 = 6.7262 < 8.7441] w=0.0853 to align # Constraint # added constraint: constraint((T0333)D295.CB, (T0333)V358.CB) [> 4.0283 = 6.7139 < 8.7280] w=0.0853 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)M357.CB) [> 3.7033 = 6.1722 < 8.0239] w=0.0853 to align # Constraint # added constraint: constraint((T0333)L256.CB, (T0333)A265.CB) [> 3.8163 = 6.3605 < 8.2687] w=0.0853 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)V33.CB) [> 3.3428 = 5.5713 < 7.2427] w=0.0852 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)T366.CB) [> 3.4131 = 5.6885 < 7.3950] w=0.0852 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)I31.CB) [> 4.5027 = 7.5045 < 9.7559] w=0.0851 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)S163.CB) [> 4.1921 = 6.9869 < 9.0829] w=0.0850 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)V162.CB) [> 3.2717 = 5.4528 < 7.0887] w=0.0850 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)L164.CB) [> 3.7145 = 6.1908 < 8.0480] w=0.0850 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)Q137.CB) [> 3.6311 = 6.0518 < 7.8674] w=0.0850 to align # Constraint # added constraint: constraint((T0333)D250.CB, (T0333)W268.CB) [> 3.9591 = 6.5985 < 8.5781] w=0.0849 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)A32.CB) [> 4.5883 = 7.6471 < 9.9412] w=0.0849 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)I16.CB) [> 4.1812 = 6.9687 < 9.0593] w=0.0849 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V120.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.0848 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)H160.CB) [> 4.1442 = 6.9070 < 8.9791] w=0.0848 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)S163.CB) [> 3.8609 = 6.4348 < 8.3653] w=0.0846 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)L325.CB) [> 3.5751 = 5.9584 < 7.7460] w=0.0843 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)V240.CB) [> 4.2259 = 7.0431 < 9.1560] w=0.0842 to align # Constraint # added constraint: constraint((T0333)T154.CB, (T0333)P167.CB) [> 4.2695 = 7.1159 < 9.2507] w=0.0842 to align # Constraint # added constraint: constraint((T0333)F225.CB, (T0333)P306.CB) [> 3.2433 = 5.4054 < 7.0271] w=0.0841 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V57.CB) [> 3.7276 = 6.2127 < 8.0765] w=0.0840 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)D308.CB) [> 3.5469 = 5.9114 < 7.6849] w=0.0840 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A34.CB) [> 4.2286 = 7.0477 < 9.1620] w=0.0839 to align # Constraint # added constraint: constraint((T0333)T154.CB, (T0333)P165.CB) [> 3.8389 = 6.3982 < 8.3177] w=0.0835 to align # Constraint # added constraint: constraint((T0333)L153.CB, (T0333)P165.CB) [> 4.5320 = 7.5534 < 9.8194] w=0.0835 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)G197.CA) [> 3.2023 = 5.3371 < 6.9382] w=0.0835 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)Q223.CB) [> 4.0009 = 6.6681 < 8.6686] w=0.0835 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)W140.CB) [> 2.4911 = 4.1519 < 5.3975] w=0.0835 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)V282.CB) [> 4.3411 = 7.2352 < 9.4057] w=0.0834 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)P306.CB) [> 4.3459 = 7.2432 < 9.4161] w=0.0833 to align # Constraint # added constraint: constraint((T0333)A43.CB, (T0333)D106.CB) [> 4.3218 = 7.2029 < 9.3638] w=0.0822 to align # Constraint # added constraint: constraint((T0333)V162.CB, (T0333)V192.CB) [> 3.7636 = 6.2727 < 8.1545] w=0.0799 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)T366.CB) [> 3.8048 = 6.3413 < 8.2437] w=0.0793 to align # Constraint # added constraint: constraint((T0333)P211.CB, (T0333)I341.CB) [> 4.1422 = 6.9036 < 8.9747] w=0.0793 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)V162.CB) [> 4.0755 = 6.7925 < 8.8303] w=0.0793 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)N136.CB) [> 3.4550 = 5.7584 < 7.4859] w=0.0792 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)I374.CB) [> 4.0658 = 6.7763 < 8.8092] w=0.0791 to align # Constraint # added constraint: constraint((T0333)P131.CB, (T0333)K159.CB) [> 4.4013 = 7.3355 < 9.5361] w=0.0791 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)R108.CB) [> 3.9266 = 6.5443 < 8.5076] w=0.0790 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)E35.CB) [> 4.1709 = 6.9515 < 9.0369] w=0.0790 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)G117.CA) [> 4.1638 = 6.9396 < 9.0215] w=0.0790 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)V162.CB) [> 4.0193 = 6.6988 < 8.7084] w=0.0789 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)T142.CB) [> 3.7791 = 6.2986 < 8.1881] w=0.0789 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V133.CB) [> 4.2290 = 7.0484 < 9.1629] w=0.0789 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)A56.CB) [> 3.8242 = 6.3736 < 8.2857] w=0.0788 to align # Constraint # added constraint: constraint((T0333)R315.CB, (T0333)V326.CB) [> 3.6339 = 6.0565 < 7.8734] w=0.0788 to align # Constraint # added constraint: constraint((T0333)A64.CB, (T0333)Q88.CB) [> 3.8669 = 6.4448 < 8.3783] w=0.0786 to align # Constraint # added constraint: constraint((T0333)A139.CB, (T0333)L164.CB) [> 4.2153 = 7.0254 < 9.1331] w=0.0786 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)R261.CB) [> 3.7821 = 6.3035 < 8.1946] w=0.0785 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)T119.CB) [> 3.9114 = 6.5190 < 8.4747] w=0.0784 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)E316.CB) [> 4.2758 = 7.1263 < 9.2642] w=0.0784 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)I370.CB) [> 3.9419 = 6.5699 < 8.5408] w=0.0781 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)D330.CB) [> 4.5122 = 7.5204 < 9.7765] w=0.0778 to align # Constraint # added constraint: constraint((T0333)L180.CB, (T0333)M189.CB) [> 3.7087 = 6.1812 < 8.0356] w=0.0777 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)E35.CB) [> 3.9675 = 6.6125 < 8.5962] w=0.0777 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)R141.CB) [> 4.3136 = 7.1893 < 9.3461] w=0.0776 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)G324.CA) [> 3.6039 = 6.0065 < 7.8085] w=0.0776 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V59.CB) [> 4.0529 = 6.7548 < 8.7812] w=0.0776 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V59.CB) [> 3.7477 = 6.2462 < 8.1201] w=0.0776 to align # Constraint # added constraint: constraint((T0333)P167.CB, (T0333)D295.CB) [> 4.2658 = 7.1097 < 9.2426] w=0.0774 to align # Constraint # added constraint: constraint((T0333)P167.CB, (T0333)T292.CB) [> 3.8836 = 6.4727 < 8.4145] w=0.0774 to align # Constraint # added constraint: constraint((T0333)A150.CB, (T0333)M291.CB) [> 4.4633 = 7.4388 < 9.6705] w=0.0774 to align # Constraint # added constraint: constraint((T0333)A150.CB, (T0333)G288.CA) [> 4.1113 = 6.8521 < 8.9077] w=0.0774 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)H146.CB) [> 4.3890 = 7.3150 < 9.5095] w=0.0774 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V120.CB) [> 4.5202 = 7.5337 < 9.7938] w=0.0774 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)A198.CB) [> 2.5303 = 4.2172 < 5.4824] w=0.0774 to align # Constraint # added constraint: constraint((T0333)L222.CB, (T0333)D308.CB) [> 3.7726 = 6.2877 < 8.1740] w=0.0774 to align # Constraint # added constraint: constraint((T0333)G287.CA, (T0333)V318.CB) [> 4.1050 = 6.8417 < 8.8943] w=0.0774 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)I323.CB) [> 4.3612 = 7.2686 < 9.4492] w=0.0774 to align # Constraint # added constraint: constraint((T0333)A317.CB, (T0333)S329.CB) [> 4.6483 = 7.7471 < 10.0712] w=0.0774 to align # Constraint # added constraint: constraint((T0333)S319.CB, (T0333)T328.CB) [> 4.5686 = 7.6143 < 9.8986] w=0.0774 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)R203.CB) [> 4.1400 = 6.9001 < 8.9701] w=0.0774 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V48.CB) [> 3.6425 = 6.0708 < 7.8920] w=0.0773 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)L325.CB) [> 3.7173 = 6.1955 < 8.0542] w=0.0771 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)E115.CB) [> 4.1486 = 6.9143 < 8.9886] w=0.0741 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L30.CB) [> 3.9160 = 6.5267 < 8.4847] w=0.0737 to align # Constraint # added constraint: constraint((T0333)L164.CB, (T0333)G197.CA) [> 3.9450 = 6.5751 < 8.5476] w=0.0735 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)M145.CB) [> 3.7463 = 6.2438 < 8.1169] w=0.0735 to align # Constraint # added constraint: constraint((T0333)L82.CB, (T0333)T119.CB) [> 3.0191 = 5.0318 < 6.5414] w=0.0733 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)G288.CA) [> 4.4913 = 7.4856 < 9.7312] w=0.0732 to align # Constraint # added constraint: constraint((T0333)G195.CA, (T0333)V367.CB) [> 3.6437 = 6.0729 < 7.8948] w=0.0732 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)G288.CA) [> 4.1636 = 6.9394 < 9.0212] w=0.0732 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)I370.CB) [> 3.6189 = 6.0315 < 7.8409] w=0.0732 to align # Constraint # added constraint: constraint((T0333)D305.CB, (T0333)V326.CB) [> 3.7094 = 6.1824 < 8.0371] w=0.0732 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)V199.CB) [> 4.1994 = 6.9990 < 9.0987] w=0.0732 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)R135.CB) [> 4.2078 = 7.0131 < 9.1170] w=0.0731 to align # Constraint # added constraint: constraint((T0333)G21.CA, (T0333)A364.CB) [> 3.5345 = 5.8908 < 7.6580] w=0.0731 to align # Constraint # added constraint: constraint((T0333)P299.CB, (T0333)R354.CB) [> 3.8648 = 6.4414 < 8.3738] w=0.0731 to align # Constraint # added constraint: constraint((T0333)G197.CA, (T0333)G288.CA) [> 4.0887 = 6.8145 < 8.8588] w=0.0730 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)Q134.CB) [> 2.9995 = 4.9992 < 6.4989] w=0.0730 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V133.CB) [> 3.9659 = 6.6097 < 8.5927] w=0.0730 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)Q134.CB) [> 3.7288 = 6.2147 < 8.0791] w=0.0730 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A132.CB) [> 3.6808 = 6.1346 < 7.9750] w=0.0730 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)R347.CB) [> 4.2624 = 7.1039 < 9.2351] w=0.0729 to align # Constraint # added constraint: constraint((T0333)P304.CB, (T0333)T328.CB) [> 3.7741 = 6.2901 < 8.1772] w=0.0727 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)L274.CB) [> 3.7350 = 6.2251 < 8.0926] w=0.0727 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)A265.CB) [> 4.0411 = 6.7352 < 8.7557] w=0.0726 to align # Constraint # added constraint: constraint((T0333)N67.CB, (T0333)Q88.CB) [> 3.6328 = 6.0547 < 7.8711] w=0.0726 to align # Constraint # added constraint: constraint((T0333)E231.CB, (T0333)L246.CB) [> 4.3517 = 7.2529 < 9.4287] w=0.0724 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)Y54.CB) [> 4.4213 = 7.3688 < 9.5794] w=0.0723 to align # Constraint # added constraint: constraint((T0333)L82.CB, (T0333)A118.CB) [> 4.3113 = 7.1855 < 9.3412] w=0.0723 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)Q137.CB) [> 3.9638 = 6.6063 < 8.5882] w=0.0721 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)L325.CB) [> 4.2766 = 7.1277 < 9.2661] w=0.0720 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)F60.CB) [> 3.3744 = 5.6239 < 7.3111] w=0.0719 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)V282.CB) [> 3.2899 = 5.4833 < 7.1282] w=0.0718 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)A280.CB) [> 4.5105 = 7.5175 < 9.7728] w=0.0718 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)T279.CB) [> 4.2242 = 7.0403 < 9.1524] w=0.0718 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)T142.CB) [> 4.2164 = 7.0273 < 9.1355] w=0.0718 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)M189.CB) [> 3.9391 = 6.5651 < 8.5347] w=0.0717 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)T292.CB) [> 3.9266 = 6.5443 < 8.5076] w=0.0717 to align # Constraint # added constraint: constraint((T0333)M291.CB, (T0333)S319.CB) [> 3.5299 = 5.8832 < 7.6481] w=0.0717 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)I323.CB) [> 3.3387 = 5.5645 < 7.2338] w=0.0717 to align # Constraint # added constraint: constraint((T0333)F310.CB, (T0333)V326.CB) [> 3.7557 = 6.2596 < 8.1374] w=0.0717 to align # Constraint # added constraint: constraint((T0333)G287.CA, (T0333)R321.CB) [> 4.7306 = 7.8843 < 10.2496] w=0.0715 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)T73.CB) [> 3.1590 = 5.2651 < 6.8446] w=0.0711 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)N67.CB) [> 3.4199 = 5.6999 < 7.4099] w=0.0710 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)E72.CB) [> 4.1079 = 6.8465 < 8.9004] w=0.0710 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)A71.CB) [> 4.1553 = 6.9255 < 9.0032] w=0.0710 to align # Constraint # added constraint: constraint((T0333)L222.CB, (T0333)G249.CA) [> 3.7743 = 6.2906 < 8.1777] w=0.0682 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)F60.CB) [> 3.9096 = 6.5160 < 8.4708] w=0.0682 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)H146.CB) [> 3.6731 = 6.1219 < 7.9584] w=0.0675 to align # Constraint # added constraint: constraint((T0333)P165.CB, (T0333)G196.CA) [> 3.7511 = 6.2519 < 8.1275] w=0.0675 to align # Constraint # added constraint: constraint((T0333)W85.CB, (T0333)T119.CB) [> 3.0128 = 5.0213 < 6.5278] w=0.0673 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)G287.CA) [> 3.7415 = 6.2358 < 8.1065] w=0.0671 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)G287.CA) [> 4.2927 = 7.1544 < 9.3008] w=0.0671 to align # Constraint # added constraint: constraint((T0333)L204.CB, (T0333)V266.CB) [> 4.0035 = 6.6725 < 8.6743] w=0.0671 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)T273.CB) [> 3.6432 = 6.0720 < 7.8936] w=0.0671 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)V367.CB) [> 3.6786 = 6.1311 < 7.9704] w=0.0671 to align # Constraint # added constraint: constraint((T0333)R321.CB, (T0333)V353.CB) [> 3.3432 = 5.5719 < 7.2435] w=0.0671 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)R369.CB) [> 4.0778 = 6.7964 < 8.8353] w=0.0671 to align # Constraint # added constraint: constraint((T0333)G195.CA, (T0333)I370.CB) [> 4.3556 = 7.2593 < 9.4371] w=0.0671 to align # Constraint # added constraint: constraint((T0333)G322.CA, (T0333)V353.CB) [> 3.9350 = 6.5583 < 8.5258] w=0.0671 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)L248.CB) [> 4.5722 = 7.6204 < 9.9065] w=0.0671 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)T154.CB) [> 3.8811 = 6.4685 < 8.4091] w=0.0671 to align # Constraint # added constraint: constraint((T0333)G195.CA, (T0333)P363.CB) [> 3.1586 = 5.2643 < 6.8436] w=0.0671 to align # Constraint # added constraint: constraint((T0333)A209.CB, (T0333)D243.CB) [> 3.7599 = 6.2664 < 8.1464] w=0.0671 to align # Constraint # added constraint: constraint((T0333)P165.CB, (T0333)Y194.CB) [> 3.5308 = 5.8847 < 7.6501] w=0.0671 to align # Constraint # added constraint: constraint((T0333)P131.CB, (T0333)I374.CB) [> 3.8040 = 6.3401 < 8.2421] w=0.0671 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)N136.CB) [> 4.3159 = 7.1931 < 9.3511] w=0.0671 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A118.CB) [> 2.7502 = 4.5837 < 5.9588] w=0.0670 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)Q134.CB) [> 3.7348 = 6.2246 < 8.0920] w=0.0670 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)I31.CB) [> 3.1849 = 5.3081 < 6.9006] w=0.0670 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Q134.CB) [> 3.8660 = 6.4433 < 8.3762] w=0.0670 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)N136.CB) [> 3.5338 = 5.8896 < 7.6565] w=0.0670 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)Q134.CB) [> 4.0469 = 6.7449 < 8.7684] w=0.0669 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A132.CB) [> 4.0390 = 6.7317 < 8.7512] w=0.0669 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)G218.CA) [> 3.9804 = 6.6339 < 8.6241] w=0.0669 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V133.CB) [> 3.7895 = 6.3158 < 8.2106] w=0.0669 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)Y194.CB) [> 4.1018 = 6.8364 < 8.8873] w=0.0668 to align # Constraint # added constraint: constraint((T0333)V92.CB, (T0333)L123.CB) [> 3.8520 = 6.4199 < 8.3459] w=0.0668 to align # Constraint # added constraint: constraint((T0333)L274.CB, (T0333)T292.CB) [> 3.5832 = 5.9721 < 7.7637] w=0.0668 to align # Constraint # added constraint: constraint((T0333)V92.CB, (T0333)A118.CB) [> 3.7214 = 6.2023 < 8.0630] w=0.0668 to align # Constraint # added constraint: constraint((T0333)I253.CB, (T0333)V263.CB) [> 3.9736 = 6.6226 < 8.6094] w=0.0667 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)Q134.CB) [> 4.3485 = 7.2476 < 9.4218] w=0.0667 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)K58.CB) [> 3.7068 = 6.1780 < 8.0314] w=0.0666 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)V33.CB) [> 3.6718 = 6.1197 < 7.9556] w=0.0665 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)A118.CB) [> 4.1664 = 6.9440 < 9.0272] w=0.0665 to align # Constraint # added constraint: constraint((T0333)G286.CA, (T0333)P304.CB) [> 4.0711 = 6.7852 < 8.8207] w=0.0665 to align # Constraint # added constraint: constraint((T0333)N67.CB, (T0333)W85.CB) [> 3.8162 = 6.3603 < 8.2683] w=0.0664 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)H146.CB) [> 3.3475 = 5.5791 < 7.2528] w=0.0664 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)A75.CB) [> 3.5924 = 5.9874 < 7.7836] w=0.0660 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)S55.CB) [> 3.7388 = 6.2313 < 8.1007] w=0.0660 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)I323.CB) [> 3.9411 = 6.5685 < 8.5390] w=0.0659 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)T73.CB) [> 2.9924 = 4.9874 < 6.4836] w=0.0658 to align # Constraint # added constraint: constraint((T0333)F13.CB, (T0333)E115.CB) [> 4.1977 = 6.9962 < 9.0950] w=0.0658 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V48.CB) [> 3.9653 = 6.6089 < 8.5916] w=0.0657 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)S138.CB) [> 3.3740 = 5.6233 < 7.3102] w=0.0656 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)S138.CB) [> 4.0672 = 6.7786 < 8.8122] w=0.0656 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)G288.CA) [> 4.1364 = 6.8939 < 8.9621] w=0.0656 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)M291.CB) [> 4.4528 = 7.4214 < 9.6478] w=0.0656 to align # Constraint # added constraint: constraint((T0333)I171.CB, (T0333)T292.CB) [> 3.2179 = 5.3632 < 6.9722] w=0.0656 to align # Constraint # added constraint: constraint((T0333)F188.CB, (T0333)T279.CB) [> 3.0134 = 5.0223 < 6.5290] w=0.0656 to align # Constraint # added constraint: constraint((T0333)F188.CB, (T0333)A280.CB) [> 4.0989 = 6.8314 < 8.8809] w=0.0656 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)R261.CB) [> 3.6524 = 6.0873 < 7.9134] w=0.0655 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)Y114.CB) [> 3.7198 = 6.1997 < 8.0596] w=0.0655 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)F60.CB) [> 3.9533 = 6.5888 < 8.5655] w=0.0654 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)Q137.CB) [> 3.3119 = 5.5199 < 7.1759] w=0.0649 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V112.CB) [> 3.7566 = 6.2610 < 8.1392] w=0.0649 to align # Constraint # added constraint: constraint((T0333)L164.CB, (T0333)G195.CA) [> 4.0675 = 6.7792 < 8.8130] w=0.0616 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V29.CB) [> 4.5191 = 7.5319 < 9.7915] w=0.0615 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)S148.CB) [> 3.9648 = 6.6080 < 8.5904] w=0.0615 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)R307.CB) [> 4.3447 = 7.2412 < 9.4136] w=0.0610 to align # Constraint # added constraint: constraint((T0333)I233.CB, (T0333)V263.CB) [> 3.8712 = 6.4519 < 8.3875] w=0.0610 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)Y194.CB) [> 3.7878 = 6.3129 < 8.2068] w=0.0610 to align # Constraint # added constraint: constraint((T0333)L122.CB, (T0333)M157.CB) [> 3.7849 = 6.3081 < 8.2005] w=0.0610 to align # Constraint # added constraint: constraint((T0333)E221.CB, (T0333)G249.CA) [> 3.9493 = 6.5821 < 8.5568] w=0.0610 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)A118.CB) [> 4.4653 = 7.4422 < 9.6749] w=0.0609 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)L156.CB) [> 3.8516 = 6.4193 < 8.3451] w=0.0609 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)F174.CB) [> 3.5588 = 5.9313 < 7.7107] w=0.0609 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)D333.CB) [> 4.1667 = 6.9445 < 9.0278] w=0.0609 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)P363.CB) [> 3.9002 = 6.5004 < 8.4505] w=0.0609 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)M291.CB) [> 4.2659 = 7.1098 < 9.2427] w=0.0609 to align # Constraint # added constraint: constraint((T0333)I323.CB, (T0333)L346.CB) [> 3.6723 = 6.1204 < 7.9566] w=0.0609 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)V192.CB) [> 4.4484 = 7.4140 < 9.6382] w=0.0609 to align # Constraint # added constraint: constraint((T0333)L96.CB, (T0333)T119.CB) [> 4.3681 = 7.2802 < 9.4643] w=0.0609 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)A118.CB) [> 3.9745 = 6.6242 < 8.6114] w=0.0608 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)M157.CB) [> 4.4332 = 7.3886 < 9.6053] w=0.0607 to align # Constraint # added constraint: constraint((T0333)D28.CB, (T0333)P131.CB) [> 3.1194 = 5.1990 < 6.7587] w=0.0607 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)A132.CB) [> 3.2474 = 5.4124 < 7.0361] w=0.0607 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V133.CB) [> 2.5768 = 4.2946 < 5.5830] w=0.0607 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V133.CB) [> 4.1878 = 6.9797 < 9.0736] w=0.0607 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)Q134.CB) [> 4.1167 = 6.8611 < 8.9194] w=0.0607 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)R135.CB) [> 2.8975 = 4.8292 < 6.2779] w=0.0607 to align # Constraint # added constraint: constraint((T0333)V50.CB, (T0333)V59.CB) [> 2.9970 = 4.9950 < 6.4935] w=0.0606 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)M145.CB) [> 3.9266 = 6.5444 < 8.5077] w=0.0606 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V33.CB) [> 4.4699 = 7.4498 < 9.6847] w=0.0606 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)L301.CB) [> 4.5073 = 7.5121 < 9.7658] w=0.0606 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)L164.CB) [> 4.0655 = 6.7758 < 8.8086] w=0.0606 to align # Constraint # added constraint: constraint((T0333)A71.CB, (T0333)D81.CB) [> 3.5167 = 5.8612 < 7.6195] w=0.0605 to align # Constraint # added constraint: constraint((T0333)V63.CB, (T0333)V92.CB) [> 3.3898 = 5.6497 < 7.3446] w=0.0605 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V113.CB) [> 4.0818 = 6.8030 < 8.8439] w=0.0605 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)G324.CA) [> 3.6640 = 6.1066 < 7.9387] w=0.0604 to align # Constraint # added constraint: constraint((T0333)F70.CB, (T0333)L82.CB) [> 3.6938 = 6.1564 < 8.0033] w=0.0603 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)W268.CB) [> 4.0756 = 6.7927 < 8.8305] w=0.0603 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)F188.CB) [> 4.3529 = 7.2548 < 9.4313] w=0.0603 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)A314.CB) [> 3.4060 = 5.6766 < 7.3796] w=0.0603 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)L325.CB) [> 4.4832 = 7.4721 < 9.7137] w=0.0601 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L123.CB) [> 4.2227 = 7.0379 < 9.1493] w=0.0600 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)Q134.CB) [> 4.1949 = 6.9915 < 9.0890] w=0.0600 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)L246.CB) [> 3.9627 = 6.6046 < 8.5859] w=0.0600 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)V266.CB) [> 4.1692 = 6.9487 < 9.0333] w=0.0599 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)G288.CA) [> 4.0680 = 6.7800 < 8.8140] w=0.0598 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)G324.CA) [> 3.8007 = 6.3344 < 8.2347] w=0.0598 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)F188.CB) [> 3.9452 = 6.5753 < 8.5479] w=0.0598 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)S138.CB) [> 3.7478 = 6.2463 < 8.1202] w=0.0598 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)A296.CB) [> 4.7113 = 7.8521 < 10.2077] w=0.0597 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)V281.CB) [> 4.6030 = 7.6716 < 9.9731] w=0.0596 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)T279.CB) [> 4.4287 = 7.3812 < 9.5956] w=0.0596 to align # Constraint # added constraint: constraint((T0333)M189.CB, (T0333)V282.CB) [> 4.0676 = 6.7793 < 8.8131] w=0.0596 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)P78.CB) [> 2.9692 = 4.9487 < 6.4333] w=0.0596 to align # Constraint # added constraint: constraint((T0333)M189.CB, (T0333)V281.CB) [> 4.0155 = 6.6924 < 8.7001] w=0.0596 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)L248.CB) [> 3.5944 = 5.9907 < 7.7880] w=0.0595 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)L325.CB) [> 3.6620 = 6.1033 < 7.9342] w=0.0594 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)F244.CB) [> 3.8256 = 6.3761 < 8.2889] w=0.0593 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V74.CB) [> 3.3810 = 5.6350 < 7.3255] w=0.0593 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)R77.CB) [> 3.8827 = 6.4711 < 8.4125] w=0.0589 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)A247.CB) [> 3.6041 = 6.0068 < 7.8088] w=0.0589 to align # Constraint # added constraint: constraint((T0333)H11.CB, (T0333)A71.CB) [> 4.1650 = 6.9417 < 9.0242] w=0.0588 to align # Constraint # added constraint: constraint((T0333)G322.CA, (T0333)L346.CB) [> 3.6160 = 6.0267 < 7.8347] w=0.0549 to align # Constraint # added constraint: constraint((T0333)P14.CB, (T0333)V199.CB) [> 3.6329 = 6.0548 < 7.8713] w=0.0549 to align # Constraint # added constraint: constraint((T0333)G286.CA, (T0333)L302.CB) [> 4.6058 = 7.6763 < 9.9792] w=0.0549 to align # Constraint # added constraint: constraint((T0333)G297.CA, (T0333)I323.CB) [> 4.6467 = 7.7445 < 10.0678] w=0.0549 to align # Constraint # added constraint: constraint((T0333)G10.CA, (T0333)G286.CA) [> 4.4179 = 7.3632 < 9.5722] w=0.0549 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)A198.CB) [> 3.9584 = 6.5974 < 8.5766] w=0.0549 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)A198.CB) [> 4.0651 = 6.7751 < 8.8076] w=0.0549 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)R135.CB) [> 4.0614 = 6.7690 < 8.7997] w=0.0549 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)Q134.CB) [> 3.4983 = 5.8305 < 7.5796] w=0.0548 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)G195.CA) [> 4.2816 = 7.1360 < 9.2768] w=0.0548 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)G197.CA) [> 3.8229 = 6.3715 < 8.2829] w=0.0548 to align # Constraint # added constraint: constraint((T0333)L301.CB, (T0333)V332.CB) [> 4.1845 = 6.9742 < 9.0665] w=0.0548 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)Y114.CB) [> 4.0715 = 6.7858 < 8.8216] w=0.0548 to align # Constraint # added constraint: constraint((T0333)E231.CB, (T0333)G257.CA) [> 3.8729 = 6.4548 < 8.3912] w=0.0548 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)I323.CB) [> 3.9429 = 6.5715 < 8.5429] w=0.0548 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)I253.CB) [> 3.3230 = 5.5384 < 7.1999] w=0.0548 to align # Constraint # added constraint: constraint((T0333)V50.CB, (T0333)P95.CB) [> 3.7710 = 6.2851 < 8.1706] w=0.0548 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)A132.CB) [> 4.1173 = 6.8621 < 8.9207] w=0.0547 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V133.CB) [> 4.1818 = 6.9696 < 9.0605] w=0.0547 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)S327.CB) [> 3.9734 = 6.6224 < 8.6091] w=0.0547 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)V192.CB) [> 3.8873 = 6.4788 < 8.4225] w=0.0547 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)V192.CB) [> 4.0335 = 6.7225 < 8.7393] w=0.0547 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)D243.CB) [> 4.2520 = 7.0868 < 9.2128] w=0.0546 to align # Constraint # added constraint: constraint((T0333)K159.CB, (T0333)F174.CB) [> 3.7781 = 6.2968 < 8.1859] w=0.0546 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)F174.CB) [> 4.1301 = 6.8835 < 8.9485] w=0.0546 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)F174.CB) [> 3.7832 = 6.3053 < 8.1969] w=0.0546 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)E172.CB) [> 4.0376 = 6.7294 < 8.7481] w=0.0546 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)Y194.CB) [> 3.9442 = 6.5737 < 8.5458] w=0.0546 to align # Constraint # added constraint: constraint((T0333)V59.CB, (T0333)V92.CB) [> 2.9870 = 4.9784 < 6.4719] w=0.0546 to align # Constraint # added constraint: constraint((T0333)E72.CB, (T0333)Q88.CB) [> 3.9534 = 6.5890 < 8.5656] w=0.0546 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)T73.CB) [> 3.9039 = 6.5065 < 8.4584] w=0.0545 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)P260.CB) [> 3.6507 = 6.0845 < 7.9098] w=0.0544 to align # Constraint # added constraint: constraint((T0333)G285.CA, (T0333)A314.CB) [> 3.7015 = 6.1691 < 8.0199] w=0.0544 to align # Constraint # added constraint: constraint((T0333)V63.CB, (T0333)A91.CB) [> 3.9889 = 6.6481 < 8.6426] w=0.0544 to align # Constraint # added constraint: constraint((T0333)T73.CB, (T0333)I89.CB) [> 4.0468 = 6.7447 < 8.7681] w=0.0544 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V326.CB) [> 4.0887 = 6.8144 < 8.8588] w=0.0543 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)W268.CB) [> 3.9056 = 6.5094 < 8.4622] w=0.0543 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)D110.CB) [> 4.1168 = 6.8614 < 8.9198] w=0.0542 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)G324.CA) [> 3.6976 = 6.1627 < 8.0115] w=0.0542 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V59.CB) [> 3.6578 = 6.0963 < 7.9252] w=0.0542 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)H146.CB) [> 3.9438 = 6.5729 < 8.5448] w=0.0542 to align # Constraint # added constraint: constraint((T0333)A314.CB, (T0333)L325.CB) [> 4.5020 = 7.5033 < 9.7542] w=0.0542 to align # Constraint # added constraint: constraint((T0333)H160.CB, (T0333)V245.CB) [> 4.0133 = 6.6888 < 8.6955] w=0.0539 to align # Constraint # added constraint: constraint((T0333)T142.CB, (T0333)S163.CB) [> 4.4580 = 7.4300 < 9.6590] w=0.0538 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)V74.CB) [> 3.9528 = 6.5879 < 8.5643] w=0.0538 to align # Constraint # added constraint: constraint((T0333)L179.CB, (T0333)W191.CB) [> 3.6329 = 6.0548 < 7.8713] w=0.0538 to align # Constraint # added constraint: constraint((T0333)E221.CB, (T0333)P255.CB) [> 3.3505 = 5.5842 < 7.2595] w=0.0538 to align # Constraint # added constraint: constraint((T0333)G286.CA, (T0333)A303.CB) [> 2.4694 = 4.1157 < 5.3505] w=0.0537 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)V326.CB) [> 3.6048 = 6.0081 < 7.8105] w=0.0537 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)I323.CB) [> 4.2060 = 7.0100 < 9.1130] w=0.0537 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V74.CB) [> 3.0410 = 5.0684 < 6.5889] w=0.0537 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L18.CB) [> 4.4493 = 7.4156 < 9.6402] w=0.0537 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)I16.CB) [> 3.8311 = 6.3851 < 8.3007] w=0.0535 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V263.CB) [> 3.9533 = 6.5889 < 8.5655] w=0.0535 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)V282.CB) [> 4.3757 = 7.2928 < 9.4807] w=0.0535 to align # Constraint # added constraint: constraint((T0333)R190.CB, (T0333)H283.CB) [> 4.0134 = 6.6890 < 8.6957] w=0.0535 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)L248.CB) [> 3.7058 = 6.1763 < 8.0292] w=0.0533 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)T73.CB) [> 3.6798 = 6.1330 < 7.9730] w=0.0533 to align # Constraint # added constraint: constraint((T0333)I9.CB, (T0333)A71.CB) [> 4.3733 = 7.2888 < 9.4755] w=0.0532 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)A314.CB) [> 3.8739 = 6.4564 < 8.3934] w=0.0532 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)R135.CB) [> 4.1569 = 6.9282 < 9.0066] w=0.0499 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)E72.CB) [> 4.2944 = 7.1573 < 9.3044] w=0.0494 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)R69.CB) [> 3.9684 = 6.6140 < 8.5982] w=0.0493 to align # Constraint # added constraint: constraint((T0333)V74.CB, (T0333)W85.CB) [> 3.6025 = 6.0042 < 7.8054] w=0.0492 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)M145.CB) [> 3.7183 = 6.1972 < 8.0563] w=0.0492 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)E115.CB) [> 3.0445 = 5.0742 < 6.5964] w=0.0491 to align # Constraint # added constraint: constraint((T0333)A64.CB, (T0333)V92.CB) [> 3.9846 = 6.6411 < 8.6334] w=0.0491 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)L274.CB) [> 3.8676 = 6.4460 < 8.3798] w=0.0488 to align # Constraint # added constraint: constraint((T0333)D295.CB, (T0333)L360.CB) [> 4.1789 = 6.9647 < 9.0542] w=0.0488 to align # Constraint # added constraint: constraint((T0333)L204.CB, (T0333)R264.CB) [> 3.8547 = 6.4245 < 8.3518] w=0.0488 to align # Constraint # added constraint: constraint((T0333)I323.CB, (T0333)M357.CB) [> 3.0291 = 5.0486 < 6.5631] w=0.0488 to align # Constraint # added constraint: constraint((T0333)P208.CB, (T0333)D243.CB) [> 3.8611 = 6.4352 < 8.3658] w=0.0488 to align # Constraint # added constraint: constraint((T0333)G197.CA, (T0333)D295.CB) [> 3.6532 = 6.0887 < 7.9154] w=0.0488 to align # Constraint # added constraint: constraint((T0333)G197.CA, (T0333)T366.CB) [> 3.3475 = 5.5792 < 7.2529] w=0.0488 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)V192.CB) [> 4.5926 = 7.6543 < 9.9506] w=0.0488 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)F152.CB) [> 3.2057 = 5.3428 < 6.9456] w=0.0488 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)Q134.CB) [> 3.8930 = 6.4883 < 8.4348] w=0.0487 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)Q134.CB) [> 4.0611 = 6.7685 < 8.7990] w=0.0487 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)N136.CB) [> 4.4769 = 7.4615 < 9.7000] w=0.0487 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)N136.CB) [> 3.6270 = 6.0449 < 7.8584] w=0.0487 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)N136.CB) [> 2.7956 = 4.6594 < 6.0572] w=0.0487 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)A34.CB) [> 4.0575 = 6.7625 < 8.7913] w=0.0487 to align # Constraint # added constraint: constraint((T0333)Q300.CB, (T0333)V326.CB) [> 3.3899 = 5.6498 < 7.3447] w=0.0487 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)R373.CB) [> 4.0191 = 6.6985 < 8.7080] w=0.0487 to align # Constraint # added constraint: constraint((T0333)H27.CB, (T0333)I374.CB) [> 4.2008 = 7.0013 < 9.1017] w=0.0487 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)R69.CB) [> 2.9263 = 4.8772 < 6.3403] w=0.0487 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)L325.CB) [> 3.8303 = 6.3837 < 8.2989] w=0.0487 to align # Constraint # added constraint: constraint((T0333)E231.CB, (T0333)L259.CB) [> 3.3790 = 5.6317 < 7.3212] w=0.0487 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)L256.CB) [> 3.2731 = 5.4551 < 7.0917] w=0.0487 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)P193.CB) [> 4.3040 = 7.1733 < 9.3253] w=0.0487 to align # Constraint # added constraint: constraint((T0333)I253.CB, (T0333)V266.CB) [> 4.2446 = 7.0744 < 9.1967] w=0.0487 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)V120.CB) [> 3.6899 = 6.1499 < 7.9948] w=0.0487 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)M145.CB) [> 4.0661 = 6.7769 < 8.8099] w=0.0486 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)A71.CB) [> 4.2102 = 7.0171 < 9.1222] w=0.0486 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)S148.CB) [> 4.2340 = 7.0567 < 9.1738] w=0.0486 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)T216.CB) [> 3.0171 = 5.0285 < 6.5370] w=0.0486 to align # Constraint # added constraint: constraint((T0333)V50.CB, (T0333)V120.CB) [> 4.1146 = 6.8577 < 8.9150] w=0.0485 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)G117.CA) [> 4.5781 = 7.6301 < 9.9192] w=0.0485 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)E172.CB) [> 3.5217 = 5.8695 < 7.6304] w=0.0485 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)M145.CB) [> 3.9250 = 6.5416 < 8.5041] w=0.0485 to align # Constraint # added constraint: constraint((T0333)R315.CB, (T0333)L325.CB) [> 3.9233 = 6.5388 < 8.5005] w=0.0485 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)F174.CB) [> 3.6156 = 6.0260 < 7.8338] w=0.0484 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)V120.CB) [> 3.0691 = 5.1151 < 6.6496] w=0.0483 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)T119.CB) [> 4.5232 = 7.5387 < 9.8003] w=0.0483 to align # Constraint # added constraint: constraint((T0333)L178.CB, (T0333)W191.CB) [> 4.2086 = 7.0143 < 9.1186] w=0.0482 to align # Constraint # added constraint: constraint((T0333)T142.CB, (T0333)V162.CB) [> 3.8427 = 6.4044 < 8.3258] w=0.0482 to align # Constraint # added constraint: constraint((T0333)L164.CB, (T0333)L248.CB) [> 3.1533 = 5.2555 < 6.8322] w=0.0482 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)W268.CB) [> 3.4641 = 5.7736 < 7.5057] w=0.0482 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)Q137.CB) [> 3.6609 = 6.1015 < 7.9319] w=0.0478 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)G186.CA) [> 3.3823 = 5.6371 < 7.3283] w=0.0478 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)I323.CB) [> 3.1616 = 5.2693 < 6.8501] w=0.0476 to align # Constraint # added constraint: constraint((T0333)M189.CB, (T0333)T279.CB) [> 4.2530 = 7.0883 < 9.2148] w=0.0476 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)A280.CB) [> 4.3349 = 7.2248 < 9.3922] w=0.0476 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)H284.CB) [> 3.9248 = 6.5413 < 8.5036] w=0.0476 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)V282.CB) [> 4.5034 = 7.5058 < 9.7575] w=0.0476 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)H284.CB) [> 3.4283 = 5.7138 < 7.4279] w=0.0476 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)T292.CB) [> 3.8299 = 6.3832 < 8.2982] w=0.0476 to align # Constraint # added constraint: constraint((T0333)G21.CA, (T0333)R315.CB) [> 3.3260 = 5.5434 < 7.2064] w=0.0476 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)N136.CB) [> 4.1448 = 6.9080 < 8.9804] w=0.0474 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)N136.CB) [> 3.6165 = 6.0275 < 7.8358] w=0.0472 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)L111.CB) [> 4.4413 = 7.4021 < 9.6227] w=0.0467 to align # Constraint # added constraint: constraint((T0333)L179.CB, (T0333)M189.CB) [> 4.1326 = 6.8877 < 8.9540] w=0.0433 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)A71.CB) [> 3.9412 = 6.5686 < 8.5392] w=0.0431 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)A314.CB) [> 3.6880 = 6.1467 < 7.9907] w=0.0428 to align # Constraint # added constraint: constraint((T0333)P131.CB, (T0333)R373.CB) [> 3.5208 = 5.8680 < 7.6284] w=0.0427 to align # Constraint # added constraint: constraint((T0333)R203.CB, (T0333)R264.CB) [> 3.4196 = 5.6993 < 7.4091] w=0.0427 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)P270.CB) [> 3.5725 = 5.9542 < 7.7405] w=0.0427 to align # Constraint # added constraint: constraint((T0333)P205.CB, (T0333)R264.CB) [> 3.7004 = 6.1673 < 8.0174] w=0.0427 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)A198.CB) [> 4.3207 = 7.2011 < 9.3615] w=0.0427 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)T277.CB) [> 4.2479 = 7.0799 < 9.2038] w=0.0427 to align # Constraint # added constraint: constraint((T0333)I323.CB, (T0333)E356.CB) [> 3.4870 = 5.8117 < 7.5552] w=0.0427 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)M157.CB) [> 3.8132 = 6.3553 < 8.2619] w=0.0427 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)G196.CA) [> 3.9838 = 6.6397 < 8.6317] w=0.0427 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)A71.CB) [> 4.0129 = 6.6882 < 8.6947] w=0.0427 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A34.CB) [> 3.8639 = 6.4398 < 8.3718] w=0.0427 to align # Constraint # added constraint: constraint((T0333)A303.CB, (T0333)S329.CB) [> 3.7497 = 6.2495 < 8.1244] w=0.0427 to align # Constraint # added constraint: constraint((T0333)L178.CB, (T0333)Y194.CB) [> 3.9714 = 6.6190 < 8.6047] w=0.0427 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)N136.CB) [> 3.6853 = 6.1421 < 7.9847] w=0.0427 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)Q116.CB) [> 4.3914 = 7.3191 < 9.5148] w=0.0427 to align # Constraint # added constraint: constraint((T0333)L179.CB, (T0333)V192.CB) [> 3.7289 = 6.2148 < 8.0793] w=0.0426 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)R135.CB) [> 4.0485 = 6.7474 < 8.7717] w=0.0426 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)T73.CB) [> 3.8792 = 6.4654 < 8.4050] w=0.0426 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A214.CB) [> 3.9054 = 6.5090 < 8.4616] w=0.0426 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)N136.CB) [> 3.3408 = 5.5680 < 7.2383] w=0.0426 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)F70.CB) [> 3.3928 = 5.6547 < 7.3511] w=0.0426 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)R69.CB) [> 3.6580 = 6.0967 < 7.9257] w=0.0426 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)V192.CB) [> 3.4828 = 5.8046 < 7.5460] w=0.0426 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)W191.CB) [> 4.3967 = 7.3278 < 9.5262] w=0.0426 to align # Constraint # added constraint: constraint((T0333)M157.CB, (T0333)W191.CB) [> 4.3377 = 7.2294 < 9.3983] w=0.0426 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)A71.CB) [> 4.2122 = 7.0204 < 9.1265] w=0.0426 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)F244.CB) [> 4.2971 = 7.1618 < 9.3104] w=0.0426 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)Q116.CB) [> 3.8498 = 6.4164 < 8.3413] w=0.0425 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)R108.CB) [> 4.2561 = 7.0935 < 9.2216] w=0.0425 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)W191.CB) [> 3.6966 = 6.1609 < 8.0092] w=0.0425 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)G196.CA) [> 4.0125 = 6.6874 < 8.6937] w=0.0425 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)I215.CB) [> 3.1998 = 5.3330 < 6.9329] w=0.0425 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)V213.CB) [> 3.2791 = 5.4652 < 7.1047] w=0.0425 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)R135.CB) [> 4.4876 = 7.4793 < 9.7231] w=0.0425 to align # Constraint # added constraint: constraint((T0333)D158.CB, (T0333)P193.CB) [> 3.9829 = 6.6381 < 8.6295] w=0.0424 to align # Constraint # added constraint: constraint((T0333)A91.CB, (T0333)L123.CB) [> 4.3429 = 7.2382 < 9.4096] w=0.0424 to align # Constraint # added constraint: constraint((T0333)V63.CB, (T0333)P95.CB) [> 4.1890 = 6.9817 < 9.0762] w=0.0424 to align # Constraint # added constraint: constraint((T0333)I227.CB, (T0333)L259.CB) [> 3.8785 = 6.4642 < 8.4035] w=0.0423 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)L111.CB) [> 4.2567 = 7.0946 < 9.2229] w=0.0423 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)L96.CB) [> 4.4283 = 7.3805 < 9.5946] w=0.0423 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)V245.CB) [> 3.6393 = 6.0655 < 7.8851] w=0.0422 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)V245.CB) [> 3.8673 = 6.4455 < 8.3792] w=0.0422 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)G249.CA) [> 3.7575 = 6.2625 < 8.1413] w=0.0422 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)V133.CB) [> 4.1666 = 6.9443 < 9.0275] w=0.0422 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)I215.CB) [> 3.7225 = 6.2041 < 8.0653] w=0.0421 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)G286.CA) [> 3.9201 = 6.5335 < 8.4935] w=0.0420 to align # Constraint # added constraint: constraint((T0333)D158.CB, (T0333)D243.CB) [> 3.9532 = 6.5887 < 8.5654] w=0.0420 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V290.CB) [> 4.0259 = 6.7099 < 8.7229] w=0.0420 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)I16.CB) [> 4.4145 = 7.3575 < 9.5648] w=0.0419 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)L246.CB) [> 3.7789 = 6.2982 < 8.1876] w=0.0417 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)V245.CB) [> 3.5211 = 5.8685 < 7.6291] w=0.0417 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)F70.CB) [> 3.4300 = 5.7166 < 7.4316] w=0.0416 to align # Constraint # added constraint: constraint((T0333)A317.CB, (T0333)S327.CB) [> 4.4433 = 7.4055 < 9.6271] w=0.0415 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)L122.CB) [> 4.1946 = 6.9910 < 9.0882] w=0.0411 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)L325.CB) [> 3.2034 = 5.3391 < 6.9408] w=0.0411 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)I323.CB) [> 4.4372 = 7.3954 < 9.6140] w=0.0411 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)S319.CB) [> 3.9390 = 6.5651 < 8.5346] w=0.0372 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)F70.CB) [> 3.1995 = 5.3326 < 6.9323] w=0.0371 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)Q116.CB) [> 3.7497 = 6.2495 < 8.1243] w=0.0370 to align # Constraint # added constraint: constraint((T0333)G324.CA, (T0333)L346.CB) [> 3.6337 = 6.0562 < 7.8731] w=0.0366 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)G26.CA) [> 3.5978 = 5.9963 < 7.7952] w=0.0366 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)R307.CB) [> 4.6118 = 7.6863 < 9.9921] w=0.0366 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)T269.CB) [> 3.8899 = 6.4831 < 8.4280] w=0.0366 to align # Constraint # added constraint: constraint((T0333)F310.CB, (T0333)R320.CB) [> 3.4766 = 5.7943 < 7.5326] w=0.0366 to align # Constraint # added constraint: constraint((T0333)G8.CA, (T0333)I220.CB) [> 4.3165 = 7.1941 < 9.3524] w=0.0366 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)T73.CB) [> 3.8316 = 6.3860 < 8.3018] w=0.0366 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)V290.CB) [> 4.4073 = 7.3454 < 9.5491] w=0.0366 to align # Constraint # added constraint: constraint((T0333)P95.CB, (T0333)V120.CB) [> 3.6307 = 6.0512 < 7.8666] w=0.0366 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)L96.CB) [> 4.2510 = 7.0850 < 9.2106] w=0.0366 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)L302.CB) [> 4.0923 = 6.8206 < 8.8667] w=0.0366 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)Q300.CB) [> 4.1195 = 6.8658 < 8.9255] w=0.0366 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)F174.CB) [> 3.9472 = 6.5787 < 8.5523] w=0.0366 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)S138.CB) [> 3.6511 = 6.0852 < 7.9107] w=0.0366 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)N136.CB) [> 3.9376 = 6.5626 < 8.5314] w=0.0366 to align # Constraint # added constraint: constraint((T0333)S163.CB, (T0333)A198.CB) [> 3.3306 = 5.5510 < 7.2163] w=0.0366 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)V281.CB) [> 4.1675 = 6.9459 < 9.0296] w=0.0366 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V213.CB) [> 4.0869 = 6.8115 < 8.8549] w=0.0365 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)L111.CB) [> 4.0947 = 6.8245 < 8.8718] w=0.0365 to align # Constraint # added constraint: constraint((T0333)R69.CB, (T0333)W85.CB) [> 4.2060 = 7.0101 < 9.1131] w=0.0365 to align # Constraint # added constraint: constraint((T0333)D250.CB, (T0333)A265.CB) [> 3.7494 = 6.2489 < 8.1236] w=0.0365 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)W191.CB) [> 3.0491 = 5.0819 < 6.6064] w=0.0365 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)M189.CB) [> 3.1409 = 5.2348 < 6.8052] w=0.0365 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)M189.CB) [> 3.9723 = 6.6205 < 8.6067] w=0.0365 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)P193.CB) [> 3.6652 = 6.1086 < 7.9412] w=0.0365 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)A280.CB) [> 4.4556 = 7.4260 < 9.6538] w=0.0365 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)A247.CB) [> 4.3577 = 7.2628 < 9.4417] w=0.0364 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)A214.CB) [> 4.4288 = 7.3814 < 9.5958] w=0.0364 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)V213.CB) [> 4.4568 = 7.4280 < 9.6564] w=0.0364 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)E212.CB) [> 4.1433 = 6.9055 < 8.9772] w=0.0364 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)T216.CB) [> 3.9191 = 6.5319 < 8.4915] w=0.0364 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)V213.CB) [> 4.3334 = 7.2223 < 9.3890] w=0.0364 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)Y114.CB) [> 3.6045 = 6.0075 < 7.8098] w=0.0364 to align # Constraint # added constraint: constraint((T0333)V207.CB, (T0333)R276.CB) [> 4.1423 = 6.9037 < 8.9749] w=0.0364 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)I31.CB) [> 4.3755 = 7.2925 < 9.4803] w=0.0364 to align # Constraint # added constraint: constraint((T0333)A64.CB, (T0333)A91.CB) [> 3.5257 = 5.8761 < 7.6389] w=0.0364 to align # Constraint # added constraint: constraint((T0333)Q62.CB, (T0333)Q88.CB) [> 3.9179 = 6.5299 < 8.4888] w=0.0363 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)A265.CB) [> 4.0065 = 6.6774 < 8.6807] w=0.0363 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A265.CB) [> 3.6823 = 6.1372 < 7.9783] w=0.0363 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)Q116.CB) [> 4.2037 = 7.0061 < 9.1079] w=0.0363 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)G249.CA) [> 3.8833 = 6.4722 < 8.4138] w=0.0363 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)V245.CB) [> 3.8689 = 6.4482 < 8.3827] w=0.0363 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)F244.CB) [> 3.0328 = 5.0547 < 6.5712] w=0.0363 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)V245.CB) [> 4.3842 = 7.3070 < 9.4991] w=0.0363 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)A247.CB) [> 3.5831 = 5.9718 < 7.7634] w=0.0363 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)L246.CB) [> 3.6054 = 6.0090 < 7.8117] w=0.0363 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)A247.CB) [> 4.1423 = 6.9038 < 8.9750] w=0.0363 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)A247.CB) [> 3.2528 = 5.4213 < 7.0477] w=0.0363 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)L248.CB) [> 4.5098 = 7.5163 < 9.7712] w=0.0363 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)G249.CA) [> 3.5251 = 5.8752 < 7.6377] w=0.0363 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)V120.CB) [> 3.9879 = 6.6465 < 8.6405] w=0.0363 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)V263.CB) [> 4.1385 = 6.8975 < 8.9667] w=0.0362 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)N262.CB) [> 4.4992 = 7.4987 < 9.7484] w=0.0362 to align # Constraint # added constraint: constraint((T0333)A139.CB, (T0333)P165.CB) [> 4.1885 = 6.9809 < 9.0751] w=0.0362 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)V245.CB) [> 4.0621 = 6.7701 < 8.8012] w=0.0361 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)W268.CB) [> 3.5707 = 5.9511 < 7.7365] w=0.0361 to align # Constraint # added constraint: constraint((T0333)V199.CB, (T0333)T362.CB) [> 4.0172 = 6.6953 < 8.7039] w=0.0361 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)T328.CB) [> 3.6791 = 6.1318 < 7.9713] w=0.0360 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)A265.CB) [> 3.9174 = 6.5290 < 8.4878] w=0.0360 to align # Constraint # added constraint: constraint((T0333)P165.CB, (T0333)G249.CA) [> 3.7239 = 6.2066 < 8.0686] w=0.0360 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)V245.CB) [> 3.8869 = 6.4781 < 8.4215] w=0.0360 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)E212.CB) [> 3.6288 = 6.0479 < 7.8623] w=0.0359 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)N262.CB) [> 3.2620 = 5.4366 < 7.0676] w=0.0359 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)A247.CB) [> 3.6452 = 6.0753 < 7.8980] w=0.0359 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)R261.CB) [> 4.1255 = 6.8758 < 8.9385] w=0.0359 to align # Constraint # added constraint: constraint((T0333)V281.CB, (T0333)L325.CB) [> 2.6384 = 4.3973 < 5.7165] w=0.0357 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)L325.CB) [> 3.7809 = 6.3015 < 8.1919] w=0.0357 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)G249.CA) [> 3.6203 = 6.0338 < 7.8440] w=0.0357 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)A314.CB) [> 4.1920 = 6.9868 < 9.0828] w=0.0356 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)S327.CB) [> 4.2508 = 7.0846 < 9.2100] w=0.0356 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)T73.CB) [> 4.1137 = 6.8561 < 8.9129] w=0.0355 to align # Constraint # added constraint: constraint((T0333)L302.CB, (T0333)T328.CB) [> 3.9581 = 6.5968 < 8.5758] w=0.0355 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)I16.CB) [> 3.5004 = 5.8340 < 7.5841] w=0.0355 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)F244.CB) [> 4.2278 = 7.0464 < 9.1603] w=0.0354 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)A198.CB) [> 4.1929 = 6.9882 < 9.0847] w=0.0351 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)L325.CB) [> 4.3178 = 7.1964 < 9.3553] w=0.0350 to align # Constraint # added constraint: constraint((T0333)F70.CB, (T0333)P260.CB) [> 3.9264 = 6.5440 < 8.5072] w=0.0346 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)Q300.CB) [> 3.7186 = 6.1977 < 8.0570] w=0.0323 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)A71.CB) [> 2.8778 = 4.7963 < 6.2352] w=0.0311 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)F70.CB) [> 3.7190 = 6.1983 < 8.0578] w=0.0311 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)W191.CB) [> 3.8564 = 6.4273 < 8.3555] w=0.0311 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)F244.CB) [> 4.0389 = 6.7316 < 8.7511] w=0.0307 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)F244.CB) [> 3.5508 = 5.9180 < 7.6934] w=0.0305 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)L246.CB) [> 3.3419 = 5.5698 < 7.2407] w=0.0305 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)V266.CB) [> 3.8261 = 6.3768 < 8.2898] w=0.0305 to align # Constraint # added constraint: constraint((T0333)V207.CB, (T0333)V245.CB) [> 4.2603 = 7.1005 < 9.2307] w=0.0305 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)S327.CB) [> 4.3400 = 7.2334 < 9.4034] w=0.0305 to align # Constraint # added constraint: constraint((T0333)T24.CB, (T0333)V367.CB) [> 4.1407 = 6.9012 < 8.9715] w=0.0305 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)G196.CA) [> 3.8335 = 6.3892 < 8.3060] w=0.0305 to align # Constraint # added constraint: constraint((T0333)L178.CB, (T0333)F188.CB) [> 3.5734 = 5.9556 < 7.7423] w=0.0305 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)L180.CB) [> 3.5634 = 5.9390 < 7.7207] w=0.0305 to align # Constraint # added constraint: constraint((T0333)P7.CB, (T0333)Q62.CB) [> 3.8425 = 6.4042 < 8.3254] w=0.0305 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)H283.CB) [> 3.9402 = 6.5669 < 8.5370] w=0.0305 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)N136.CB) [> 3.3108 = 5.5179 < 7.1733] w=0.0305 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)F188.CB) [> 3.6250 = 6.0416 < 7.8541] w=0.0305 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)A303.CB) [> 3.8743 = 6.4572 < 8.3944] w=0.0305 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)T216.CB) [> 4.1098 = 6.8497 < 8.9046] w=0.0305 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V192.CB) [> 4.2460 = 7.0766 < 9.1996] w=0.0305 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)D110.CB) [> 4.2442 = 7.0738 < 9.1959] w=0.0305 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V213.CB) [> 4.1265 = 6.8776 < 8.9408] w=0.0304 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)A118.CB) [> 4.2961 = 7.1602 < 9.3083] w=0.0304 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)L18.CB) [> 3.7478 = 6.2462 < 8.1201] w=0.0304 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)I215.CB) [> 4.5584 = 7.5974 < 9.8766] w=0.0304 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)W191.CB) [> 4.1127 = 6.8545 < 8.9108] w=0.0304 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)D243.CB) [> 3.6855 = 6.1424 < 7.9851] w=0.0304 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)F244.CB) [> 3.6194 = 6.0324 < 7.8421] w=0.0304 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)F244.CB) [> 4.2928 = 7.1547 < 9.3011] w=0.0304 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)G117.CA) [> 3.9453 = 6.5754 < 8.5481] w=0.0304 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)E172.CB) [> 3.5298 = 5.8830 < 7.6479] w=0.0304 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)L259.CB) [> 3.9520 = 6.5866 < 8.5625] w=0.0304 to align # Constraint # added constraint: constraint((T0333)N67.CB, (T0333)A79.CB) [> 3.0597 = 5.0995 < 6.6293] w=0.0304 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)R135.CB) [> 3.7061 = 6.1769 < 8.0300] w=0.0304 to align # Constraint # added constraint: constraint((T0333)P68.CB, (T0333)A79.CB) [> 4.2415 = 7.0691 < 9.1898] w=0.0304 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)A132.CB) [> 4.3513 = 7.2522 < 9.4278] w=0.0304 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)Q300.CB) [> 3.3682 = 5.6136 < 7.2977] w=0.0304 to align # Constraint # added constraint: constraint((T0333)T219.CB, (T0333)P304.CB) [> 4.6140 = 7.6900 < 9.9970] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)T216.CB) [> 3.4427 = 5.7378 < 7.4591] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)M217.CB) [> 3.4418 = 5.7363 < 7.4572] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)G218.CA) [> 3.2416 = 5.4026 < 7.0234] w=0.0303 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)Y114.CB) [> 3.8476 = 6.4126 < 8.3364] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)Y194.CB) [> 3.7587 = 6.2644 < 8.1438] w=0.0303 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)G117.CA) [> 4.1031 = 6.8384 < 8.8900] w=0.0303 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)V213.CB) [> 3.7298 = 6.2163 < 8.0813] w=0.0303 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)Y114.CB) [> 4.0876 = 6.8126 < 8.8564] w=0.0303 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)A247.CB) [> 3.8685 = 6.4475 < 8.3817] w=0.0303 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)M217.CB) [> 4.1842 = 6.9737 < 9.0658] w=0.0303 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L12.CB) [> 4.7672 = 7.9453 < 10.3289] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)T216.CB) [> 4.1584 = 6.9307 < 9.0099] w=0.0303 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)A214.CB) [> 2.8061 = 4.6769 < 6.0800] w=0.0303 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)A214.CB) [> 4.3418 = 7.2363 < 9.4072] w=0.0303 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)A214.CB) [> 3.6825 = 6.1375 < 7.9787] w=0.0303 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)E212.CB) [> 2.7384 = 4.5640 < 5.9331] w=0.0303 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)G196.CA) [> 4.0564 = 6.7607 < 8.7889] w=0.0303 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)T279.CB) [> 4.3226 = 7.2044 < 9.3657] w=0.0303 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)V240.CB) [> 4.0391 = 6.7318 < 8.7513] w=0.0303 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)Y107.CB) [> 4.1945 = 6.9908 < 9.0881] w=0.0302 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V290.CB) [> 3.8242 = 6.3737 < 8.2859] w=0.0302 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)A32.CB) [> 4.4836 = 7.4726 < 9.7144] w=0.0302 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)L248.CB) [> 3.5712 = 5.9520 < 7.7376] w=0.0302 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)V199.CB) [> 3.8505 = 6.4175 < 8.3428] w=0.0302 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)L325.CB) [> 3.8335 = 6.3892 < 8.3059] w=0.0302 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)G267.CA) [> 3.9161 = 6.5269 < 8.4850] w=0.0301 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)V245.CB) [> 3.7656 = 6.2759 < 8.1587] w=0.0301 to align # Constraint # added constraint: constraint((T0333)I80.CB, (T0333)A118.CB) [> 3.1578 = 5.2629 < 6.8418] w=0.0301 to align # Constraint # added constraint: constraint((T0333)P78.CB, (T0333)A118.CB) [> 3.2918 = 5.4864 < 7.1323] w=0.0301 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)P260.CB) [> 4.0672 = 6.7786 < 8.8122] w=0.0300 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Q137.CB) [> 4.1655 = 6.9426 < 9.0253] w=0.0300 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)L259.CB) [> 3.6919 = 6.1532 < 7.9992] w=0.0300 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)I215.CB) [> 3.6429 = 6.0715 < 7.8929] w=0.0300 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)E212.CB) [> 3.6210 = 6.0350 < 7.8455] w=0.0300 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)T216.CB) [> 3.5809 = 5.9681 < 7.7586] w=0.0300 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)F244.CB) [> 3.1279 = 5.2132 < 6.7771] w=0.0299 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)V245.CB) [> 4.2468 = 7.0779 < 9.2013] w=0.0299 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)L246.CB) [> 3.1770 = 5.2950 < 6.8835] w=0.0299 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)V290.CB) [> 3.6606 = 6.1010 < 7.9313] w=0.0298 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)N136.CB) [> 3.7035 = 6.1726 < 8.0243] w=0.0297 to align # Constraint # added constraint: constraint((T0333)T279.CB, (T0333)I323.CB) [> 3.9859 = 6.6432 < 8.6362] w=0.0296 to align # Constraint # added constraint: constraint((T0333)R276.CB, (T0333)A317.CB) [> 3.9017 = 6.5028 < 8.4536] w=0.0296 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)S138.CB) [> 3.3693 = 5.6155 < 7.3001] w=0.0296 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)A198.CB) [> 3.9361 = 6.5601 < 8.5281] w=0.0295 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)A247.CB) [> 3.6564 = 6.0940 < 7.9222] w=0.0295 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)I323.CB) [> 3.8903 = 6.4839 < 8.4290] w=0.0294 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)A317.CB) [> 3.2350 = 5.3916 < 7.0091] w=0.0294 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)T328.CB) [> 3.7662 = 6.2770 < 8.1601] w=0.0294 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)Y114.CB) [> 4.2356 = 7.0594 < 9.1772] w=0.0294 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)P299.CB) [> 3.7627 = 6.2712 < 8.1526] w=0.0262 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)P299.CB) [> 4.7481 = 7.9135 < 10.2875] w=0.0262 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)L30.CB) [> 4.4172 = 7.3620 < 9.5706] w=0.0250 to align # Constraint # added constraint: constraint((T0333)D202.CB, (T0333)T273.CB) [> 3.9329 = 6.5549 < 8.5213] w=0.0244 to align # Constraint # added constraint: constraint((T0333)R307.CB, (T0333)A317.CB) [> 3.8558 = 6.4264 < 8.3543] w=0.0244 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)G342.CA) [> 4.5138 = 7.5230 < 9.7800] w=0.0244 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)V358.CB) [> 3.1939 = 5.3232 < 6.9201] w=0.0244 to align # Constraint # added constraint: constraint((T0333)P165.CB, (T0333)F188.CB) [> 4.0724 = 6.7874 < 8.8236] w=0.0244 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)H284.CB) [> 3.5943 = 5.9906 < 7.7877] w=0.0244 to align # Constraint # added constraint: constraint((T0333)T76.CB, (T0333)A91.CB) [> 4.3595 = 7.2658 < 9.4455] w=0.0244 to align # Constraint # added constraint: constraint((T0333)V74.CB, (T0333)A91.CB) [> 3.4406 = 5.7344 < 7.4547] w=0.0244 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)E172.CB) [> 3.9620 = 6.6033 < 8.5843] w=0.0244 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)A32.CB) [> 4.6534 = 7.7557 < 10.0824] w=0.0244 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)V133.CB) [> 4.0994 = 6.8324 < 8.8821] w=0.0244 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)E172.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.0244 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)T119.CB) [> 3.5182 = 5.8636 < 7.6227] w=0.0244 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)T216.CB) [> 4.3514 = 7.2523 < 9.4280] w=0.0244 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)P193.CB) [> 3.9765 = 6.6274 < 8.6157] w=0.0244 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)A303.CB) [> 3.6516 = 6.0861 < 7.9119] w=0.0244 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)E172.CB) [> 4.0685 = 6.7808 < 8.8150] w=0.0244 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)Q116.CB) [> 4.2600 = 7.1000 < 9.2299] w=0.0244 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)A214.CB) [> 3.6986 = 6.1644 < 8.0137] w=0.0244 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)E212.CB) [> 4.1317 = 6.8862 < 8.9520] w=0.0244 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)E212.CB) [> 3.6787 = 6.1311 < 7.9704] w=0.0244 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)V113.CB) [> 3.0743 = 5.1238 < 6.6609] w=0.0244 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V113.CB) [> 3.5630 = 5.9383 < 7.7198] w=0.0244 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)W187.CB) [> 3.3291 = 5.5485 < 7.2130] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)L246.CB) [> 4.0955 = 6.8258 < 8.8736] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V245.CB) [> 3.3691 = 5.6152 < 7.2997] w=0.0243 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V245.CB) [> 3.9402 = 6.5669 < 8.5370] w=0.0243 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)F244.CB) [> 3.5731 = 5.9551 < 7.7417] w=0.0243 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)V29.CB) [> 4.4496 = 7.4159 < 9.6407] w=0.0243 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)Q161.CB) [> 3.6667 = 6.1111 < 7.9444] w=0.0243 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)G196.CA) [> 4.3696 = 7.2826 < 9.4674] w=0.0243 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)Y194.CB) [> 3.4646 = 5.7743 < 7.5066] w=0.0243 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A34.CB) [> 4.6564 = 7.7607 < 10.0889] w=0.0243 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)V192.CB) [> 3.2129 = 5.3548 < 6.9613] w=0.0243 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)G196.CA) [> 3.3170 = 5.5284 < 7.1869] w=0.0243 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)F174.CB) [> 2.6985 = 4.4975 < 5.8468] w=0.0243 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)L246.CB) [> 3.9291 = 6.5486 < 8.5131] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)L246.CB) [> 2.9947 = 4.9912 < 6.4886] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V245.CB) [> 4.2716 = 7.1194 < 9.2552] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)F244.CB) [> 4.0343 = 6.7239 < 8.7411] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)P193.CB) [> 3.2964 = 5.4940 < 7.1422] w=0.0243 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)P260.CB) [> 3.9814 = 6.6357 < 8.6264] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)Q137.CB) [> 4.0515 = 6.7525 < 8.7782] w=0.0243 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)L246.CB) [> 3.9694 = 6.6156 < 8.6003] w=0.0243 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)L302.CB) [> 3.6874 = 6.1457 < 7.9894] w=0.0243 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)I323.CB) [> 3.7459 = 6.2432 < 8.1162] w=0.0243 to align # Constraint # added constraint: constraint((T0333)L200.CB, (T0333)A214.CB) [> 3.9548 = 6.5913 < 8.5687] w=0.0242 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)V282.CB) [> 3.3583 = 5.5971 < 7.2763] w=0.0242 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V133.CB) [> 4.2160 = 7.0266 < 9.1346] w=0.0242 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)A280.CB) [> 4.6260 = 7.7101 < 10.0231] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V282.CB) [> 3.9610 = 6.6016 < 8.5821] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V281.CB) [> 3.2628 = 5.4380 < 7.0694] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)A280.CB) [> 4.3302 = 7.2171 < 9.3822] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V281.CB) [> 4.1357 = 6.8929 < 8.9608] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A280.CB) [> 3.2397 = 5.3995 < 7.0194] w=0.0242 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A280.CB) [> 3.9697 = 6.6161 < 8.6010] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)R135.CB) [> 3.5615 = 5.9358 < 7.7165] w=0.0242 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)R135.CB) [> 3.4641 = 5.7735 < 7.5056] w=0.0241 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V290.CB) [> 4.1909 = 6.9849 < 9.0804] w=0.0241 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)G267.CA) [> 2.7149 = 4.5248 < 5.8822] w=0.0241 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V112.CB) [> 3.7977 = 6.3296 < 8.2284] w=0.0241 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)D110.CB) [> 3.7480 = 6.2466 < 8.1206] w=0.0241 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)R108.CB) [> 3.7962 = 6.3271 < 8.2252] w=0.0241 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)F244.CB) [> 4.3784 = 7.2973 < 9.4866] w=0.0241 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)D243.CB) [> 2.9880 = 4.9800 < 6.4740] w=0.0241 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)D243.CB) [> 4.0651 = 6.7752 < 8.8078] w=0.0241 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)F244.CB) [> 4.4994 = 7.4989 < 9.7486] w=0.0241 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)V245.CB) [> 2.9592 = 4.9320 < 6.4116] w=0.0241 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)F244.CB) [> 3.7514 = 6.2524 < 8.1281] w=0.0241 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)V245.CB) [> 4.2864 = 7.1441 < 9.2873] w=0.0241 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)A247.CB) [> 4.2531 = 7.0885 < 9.2150] w=0.0241 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)P260.CB) [> 2.9013 = 4.8356 < 6.2862] w=0.0241 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)I323.CB) [> 4.4515 = 7.4192 < 9.6450] w=0.0241 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)D243.CB) [> 3.1994 = 5.3324 < 6.9321] w=0.0239 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)Q161.CB) [> 4.5742 = 7.6237 < 9.9108] w=0.0239 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)Y194.CB) [> 4.3787 = 7.2979 < 9.4873] w=0.0239 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V192.CB) [> 3.7707 = 6.2845 < 8.1699] w=0.0239 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)G297.CA) [> 4.2365 = 7.0609 < 9.1792] w=0.0239 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)A214.CB) [> 4.5180 = 7.5300 < 9.7891] w=0.0239 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)V213.CB) [> 3.2438 = 5.4063 < 7.0282] w=0.0239 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)V213.CB) [> 3.5320 = 5.8867 < 7.6526] w=0.0239 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)A214.CB) [> 3.8419 = 6.4032 < 8.3241] w=0.0239 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)L248.CB) [> 4.4533 = 7.4222 < 9.6488] w=0.0239 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)I215.CB) [> 2.9533 = 4.9222 < 6.3989] w=0.0239 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)M217.CB) [> 3.2152 = 5.3586 < 6.9662] w=0.0239 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)G249.CA) [> 3.2690 = 5.4483 < 7.0828] w=0.0238 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)M217.CB) [> 4.2776 = 7.1293 < 9.2681] w=0.0238 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)H284.CB) [> 4.7397 = 7.8995 < 10.2694] w=0.0238 to align # Constraint # added constraint: constraint((T0333)T216.CB, (T0333)D243.CB) [> 4.2611 = 7.1019 < 9.2324] w=0.0234 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)G249.CA) [> 4.0382 = 6.7303 < 8.7494] w=0.0234 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)L246.CB) [> 3.4076 = 5.6794 < 7.3832] w=0.0233 to align # Constraint # added constraint: constraint((T0333)G297.CA, (T0333)L325.CB) [> 4.1022 = 6.8370 < 8.8881] w=0.0233 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)A303.CB) [> 4.2271 = 7.0451 < 9.1587] w=0.0201 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)L301.CB) [> 4.1692 = 6.9487 < 9.0333] w=0.0201 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)L301.CB) [> 3.8758 = 6.4596 < 8.3975] w=0.0201 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)L302.CB) [> 4.1214 = 6.8690 < 8.9297] w=0.0195 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)Q300.CB) [> 4.0893 = 6.8155 < 8.8601] w=0.0195 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)L302.CB) [> 3.7216 = 6.2027 < 8.0634] w=0.0189 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)A247.CB) [> 3.4047 = 5.6745 < 7.3768] w=0.0184 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)L246.CB) [> 4.7509 = 7.9182 < 10.2937] w=0.0183 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)I16.CB) [> 4.7579 = 7.9299 < 10.3089] w=0.0183 to align # Constraint # added constraint: constraint((T0333)A280.CB, (T0333)L302.CB) [> 3.7956 = 6.3260 < 8.2239] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)V112.CB) [> 4.6717 = 7.7862 < 10.1221] w=0.0183 to align # Constraint # added constraint: constraint((T0333)G267.CA, (T0333)P304.CB) [> 3.9848 = 6.6414 < 8.6338] w=0.0183 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)I215.CB) [> 3.7848 = 6.3080 < 8.2004] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)E212.CB) [> 3.6282 = 6.0470 < 7.8611] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)E212.CB) [> 3.9147 = 6.5245 < 8.4819] w=0.0183 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)T119.CB) [> 4.4845 = 7.4742 < 9.7165] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)A247.CB) [> 4.1241 = 6.8734 < 8.9355] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)L325.CB) [> 3.9023 = 6.5037 < 8.4549] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L178.CB, (T0333)W187.CB) [> 3.6493 = 6.0821 < 7.9067] w=0.0183 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)M217.CB) [> 3.9259 = 6.5431 < 8.5060] w=0.0183 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)L302.CB) [> 4.4070 = 7.3450 < 9.5484] w=0.0183 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A303.CB) [> 4.5135 = 7.5225 < 9.7793] w=0.0183 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L302.CB) [> 3.0781 = 5.1302 < 6.6693] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A303.CB) [> 4.5076 = 7.5127 < 9.7665] w=0.0183 to align # Constraint # added constraint: constraint((T0333)G26.CA, (T0333)R69.CB) [> 4.6262 = 7.7103 < 10.0234] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)E172.CB) [> 4.0696 = 6.7827 < 8.8175] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)R135.CB) [> 4.7229 = 7.8715 < 10.2329] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)G218.CA) [> 4.2189 = 7.0315 < 9.1410] w=0.0183 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)M217.CB) [> 3.4656 = 5.7760 < 7.5088] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)G218.CA) [> 4.1762 = 6.9603 < 9.0484] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)M217.CB) [> 3.8846 = 6.4744 < 8.4167] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)F174.CB) [> 3.5184 = 5.8640 < 7.6232] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A247.CB) [> 3.1245 = 5.2075 < 6.7698] w=0.0183 to align # Constraint # added constraint: constraint((T0333)R108.CB, (T0333)D243.CB) [> 3.3686 = 5.6144 < 7.2987] w=0.0183 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)P193.CB) [> 2.5194 = 4.1991 < 5.4588] w=0.0183 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)G218.CA) [> 4.3135 = 7.1893 < 9.3460] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)G201.CA) [> 4.6987 = 7.8312 < 10.1806] w=0.0183 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)L301.CB) [> 4.1138 = 6.8563 < 8.9132] w=0.0183 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)T216.CB) [> 3.9839 = 6.6398 < 8.6318] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)T216.CB) [> 3.0963 = 5.1604 < 6.7086] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V213.CB) [> 3.2334 = 5.3889 < 7.0056] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)A214.CB) [> 4.2338 = 7.0563 < 9.1732] w=0.0183 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)A132.CB) [> 3.7899 = 6.3166 < 8.2115] w=0.0183 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)T216.CB) [> 3.3071 = 5.5118 < 7.1653] w=0.0183 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)M217.CB) [> 3.4858 = 5.8096 < 7.5525] w=0.0183 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)Q134.CB) [> 4.3593 = 7.2654 < 9.4450] w=0.0183 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)Q300.CB) [> 4.2762 = 7.1270 < 9.2651] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)L301.CB) [> 3.4817 = 5.8029 < 7.5438] w=0.0183 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)L302.CB) [> 4.2377 = 7.0629 < 9.1817] w=0.0183 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A118.CB) [> 3.4614 = 5.7690 < 7.4997] w=0.0183 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A118.CB) [> 3.7319 = 6.2198 < 8.0858] w=0.0183 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Q137.CB) [> 4.5696 = 7.6160 < 9.9008] w=0.0183 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)S138.CB) [> 3.9758 = 6.6264 < 8.6143] w=0.0183 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)G218.CA) [> 3.5165 = 5.8609 < 7.6191] w=0.0183 to align # Constraint # added constraint: constraint((T0333)I220.CB, (T0333)D343.CB) [> 2.7973 = 4.6622 < 6.0608] w=0.0182 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)F174.CB) [> 3.0491 = 5.0818 < 6.6064] w=0.0182 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)Y194.CB) [> 2.7434 = 4.5724 < 5.9441] w=0.0182 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)P193.CB) [> 4.1139 = 6.8565 < 8.9135] w=0.0182 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)D243.CB) [> 4.1512 = 6.9186 < 8.9942] w=0.0182 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)Q134.CB) [> 4.5554 = 7.5923 < 9.8700] w=0.0182 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)L325.CB) [> 3.7345 = 6.2241 < 8.0914] w=0.0182 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)I215.CB) [> 3.9160 = 6.5266 < 8.4846] w=0.0182 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)I215.CB) [> 3.9536 = 6.5894 < 8.5661] w=0.0182 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)Q137.CB) [> 3.7027 = 6.1711 < 8.0224] w=0.0182 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)E172.CB) [> 3.7363 = 6.2272 < 8.0954] w=0.0182 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)P95.CB) [> 4.1211 = 6.8685 < 8.9291] w=0.0182 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)Q161.CB) [> 3.6978 = 6.1629 < 8.0118] w=0.0182 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V133.CB) [> 3.4367 = 5.7279 < 7.4462] w=0.0182 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)G267.CA) [> 4.1195 = 6.8658 < 8.9255] w=0.0182 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)Q161.CB) [> 4.0836 = 6.8061 < 8.8479] w=0.0182 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L15.CB) [> 4.7231 = 7.8718 < 10.2333] w=0.0182 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)G218.CA) [> 3.4571 = 5.7618 < 7.4904] w=0.0182 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)I215.CB) [> 4.6364 = 7.7274 < 10.0456] w=0.0181 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)R261.CB) [> 3.4414 = 5.7357 < 7.4563] w=0.0181 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)N262.CB) [> 2.7062 = 4.5104 < 5.8635] w=0.0181 to align # Constraint # added constraint: constraint((T0333)N262.CB, (T0333)A280.CB) [> 4.4307 = 7.3846 < 9.5999] w=0.0181 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)H284.CB) [> 3.7962 = 6.3271 < 8.2252] w=0.0181 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V282.CB) [> 2.5793 = 4.2989 < 5.5885] w=0.0181 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V281.CB) [> 4.5002 = 7.5004 < 9.7505] w=0.0181 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V282.CB) [> 3.9263 = 6.5438 < 8.5070] w=0.0181 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)N262.CB) [> 4.6770 = 7.7949 < 10.1334] w=0.0181 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)A132.CB) [> 4.6670 = 7.7784 < 10.1119] w=0.0181 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)E115.CB) [> 3.2995 = 5.4992 < 7.1490] w=0.0181 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)A247.CB) [> 4.4815 = 7.4692 < 9.7099] w=0.0181 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)V290.CB) [> 3.7402 = 6.2336 < 8.1037] w=0.0180 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)G117.CA) [> 3.5181 = 5.8635 < 7.6225] w=0.0180 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)A34.CB) [> 4.6341 = 7.7234 < 10.0405] w=0.0180 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V213.CB) [> 2.9535 = 4.9225 < 6.3992] w=0.0180 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)A214.CB) [> 2.7385 = 4.5642 < 5.9335] w=0.0180 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)I215.CB) [> 3.4778 = 5.7964 < 7.5353] w=0.0180 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)I215.CB) [> 4.3166 = 7.1943 < 9.3526] w=0.0180 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)T216.CB) [> 2.9083 = 4.8472 < 6.3013] w=0.0180 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)M217.CB) [> 4.1243 = 6.8739 < 8.9361] w=0.0180 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)V120.CB) [> 3.5433 = 5.9056 < 7.6772] w=0.0180 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)E212.CB) [> 4.3378 = 7.2297 < 9.3986] w=0.0180 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)P260.CB) [> 4.7553 = 7.9254 < 10.3031] w=0.0180 to align # Constraint # added constraint: constraint((T0333)H283.CB, (T0333)I323.CB) [> 3.4792 = 5.7987 < 7.5384] w=0.0180 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)Q161.CB) [> 3.9734 = 6.6224 < 8.6091] w=0.0178 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V192.CB) [> 4.0513 = 6.7522 < 8.7778] w=0.0178 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)G196.CA) [> 3.2161 = 5.3601 < 6.9682] w=0.0178 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)V213.CB) [> 4.3773 = 7.2955 < 9.4842] w=0.0178 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)A247.CB) [> 3.4144 = 5.6907 < 7.3979] w=0.0178 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)Q137.CB) [> 3.4462 = 5.7437 < 7.4668] w=0.0177 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)Q161.CB) [> 4.0007 = 6.6678 < 8.6682] w=0.0176 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)A247.CB) [> 4.1921 = 6.9868 < 9.0828] w=0.0173 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)L248.CB) [> 4.6468 = 7.7447 < 10.0681] w=0.0173 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)G249.CA) [> 3.3394 = 5.5657 < 7.2354] w=0.0173 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)L246.CB) [> 4.5530 = 7.5883 < 9.8648] w=0.0173 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L248.CB) [> 3.7758 = 6.2930 < 8.1809] w=0.0173 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)Q300.CB) [> 3.5401 = 5.9002 < 7.6703] w=0.0140 to align # Constraint # added constraint: constraint((T0333)R276.CB, (T0333)V290.CB) [> 4.3560 = 7.2600 < 9.4380] w=0.0134 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)A303.CB) [> 2.8528 = 4.7548 < 6.1812] w=0.0134 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)A303.CB) [> 3.7512 = 6.2520 < 8.1275] w=0.0134 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)N136.CB) [> 4.5281 = 7.5469 < 9.8110] w=0.0132 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)V29.CB) [> 4.6766 = 7.7944 < 10.1327] w=0.0128 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)L246.CB) [> 2.8385 = 4.7309 < 6.1501] w=0.0128 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)A303.CB) [> 3.1098 = 5.1830 < 6.7379] w=0.0127 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)L248.CB) [> 4.0172 = 6.6953 < 8.7039] w=0.0123 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)V213.CB) [> 4.4544 = 7.4240 < 9.6512] w=0.0122 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)D243.CB) [> 4.7217 = 7.8696 < 10.2304] w=0.0122 to align # Constraint # added constraint: constraint((T0333)G201.CA, (T0333)V245.CB) [> 4.1980 = 6.9967 < 9.0957] w=0.0122 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)R276.CB) [> 4.7147 = 7.8578 < 10.2151] w=0.0122 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)V192.CB) [> 3.6769 = 6.1282 < 7.9666] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)Y194.CB) [> 3.7835 = 6.3058 < 8.1976] w=0.0122 to align # Constraint # added constraint: constraint((T0333)P95.CB, (T0333)L123.CB) [> 4.2176 = 7.0293 < 9.1381] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)P193.CB) [> 4.0658 = 6.7763 < 8.8092] w=0.0122 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)Q161.CB) [> 2.8435 = 4.7392 < 6.1609] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)A198.CB) [> 3.3946 = 5.6577 < 7.3550] w=0.0122 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)A247.CB) [> 3.3414 = 5.5690 < 7.2397] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)A214.CB) [> 4.1795 = 6.9659 < 9.0557] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)W191.CB) [> 4.2721 = 7.1201 < 9.2562] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)A214.CB) [> 4.5398 = 7.5663 < 9.8362] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)I215.CB) [> 4.3236 = 7.2060 < 9.3678] w=0.0122 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)L302.CB) [> 4.6929 = 7.8214 < 10.1679] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)Q300.CB) [> 4.2254 = 7.0423 < 9.1550] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)A214.CB) [> 3.0779 = 5.1299 < 6.6688] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)V213.CB) [> 3.3731 = 5.6219 < 7.3084] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)V290.CB) [> 4.0377 = 6.7294 < 8.7483] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)T216.CB) [> 2.9309 = 4.8848 < 6.3502] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)M217.CB) [> 4.4604 = 7.4340 < 9.6643] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)G218.CA) [> 4.1651 = 6.9419 < 9.0245] w=0.0122 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)V290.CB) [> 3.3377 = 5.5628 < 7.2317] w=0.0122 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)H284.CB) [> 4.3151 = 7.1918 < 9.3493] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)I215.CB) [> 3.4277 = 5.7128 < 7.4267] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A214.CB) [> 3.6069 = 6.0115 < 7.8150] w=0.0122 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)G218.CA) [> 3.8907 = 6.4845 < 8.4298] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)E115.CB) [> 4.1958 = 6.9929 < 9.0908] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)R135.CB) [> 4.2631 = 7.1052 < 9.2367] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)Y114.CB) [> 3.5672 = 5.9454 < 7.7290] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)A132.CB) [> 3.8590 = 6.4316 < 8.3611] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)V192.CB) [> 4.2668 = 7.1114 < 9.2448] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)Y194.CB) [> 3.5854 = 5.9757 < 7.7684] w=0.0122 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)M217.CB) [> 3.7100 = 6.1833 < 8.0383] w=0.0122 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)G218.CA) [> 3.6679 = 6.1132 < 7.9472] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)P193.CB) [> 4.1254 = 6.8756 < 8.9383] w=0.0122 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)L248.CB) [> 3.9367 = 6.5612 < 8.5296] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)I323.CB) [> 4.4500 = 7.4166 < 9.6416] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A303.CB) [> 4.3045 = 7.1741 < 9.3264] w=0.0122 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)L301.CB) [> 4.2478 = 7.0797 < 9.2036] w=0.0122 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)Q300.CB) [> 3.9794 = 6.6323 < 8.6220] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L302.CB) [> 4.6447 = 7.7412 < 10.0636] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)L301.CB) [> 2.9884 = 4.9806 < 6.4748] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Q300.CB) [> 4.7726 = 7.9544 < 10.3407] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)H283.CB) [> 4.3685 = 7.2809 < 9.4652] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)A198.CB) [> 3.4991 = 5.8319 < 7.5814] w=0.0122 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)A214.CB) [> 3.0635 = 5.1059 < 6.6377] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)I323.CB) [> 3.9626 = 6.6044 < 8.5857] w=0.0122 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)L325.CB) [> 3.9115 = 6.5192 < 8.4749] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)G218.CA) [> 4.6988 = 7.8314 < 10.1808] w=0.0122 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)E212.CB) [> 3.5851 = 5.9751 < 7.7676] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)L246.CB) [> 4.1844 = 6.9739 < 9.0661] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)Q300.CB) [> 2.9704 = 4.9506 < 6.4358] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)L301.CB) [> 4.5360 = 7.5599 < 9.8279] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)Q300.CB) [> 4.4180 = 7.3634 < 9.5724] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)L302.CB) [> 3.0289 = 5.0483 < 6.5627] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)A303.CB) [> 4.0306 = 6.7177 < 8.7330] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)E212.CB) [> 3.1070 = 5.1783 < 6.7318] w=0.0122 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)A214.CB) [> 3.9592 = 6.5986 < 8.5782] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)A303.CB) [> 3.4717 = 5.7862 < 7.5221] w=0.0122 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)A214.CB) [> 4.3154 = 7.1924 < 9.3501] w=0.0122 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)E212.CB) [> 3.8070 = 6.3450 < 8.2485] w=0.0122 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)A247.CB) [> 4.6013 = 7.6688 < 9.9695] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)L325.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)R108.CB) [> 3.3414 = 5.5690 < 7.2396] w=0.0122 to align # Constraint # added constraint: constraint((T0333)R108.CB, (T0333)E212.CB) [> 4.2391 = 7.0651 < 9.1846] w=0.0122 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)V213.CB) [> 3.9933 = 6.6556 < 8.6522] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A214.CB) [> 4.0700 = 6.7833 < 8.8182] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)T216.CB) [> 4.4295 = 7.3824 < 9.5972] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)I215.CB) [> 3.0694 = 5.1157 < 6.6504] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)T216.CB) [> 4.0950 = 6.8250 < 8.8725] w=0.0122 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)V133.CB) [> 3.9585 = 6.5974 < 8.5767] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)L302.CB) [> 3.6514 = 6.0856 < 7.9113] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A303.CB) [> 4.6593 = 7.7654 < 10.0951] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)G249.CA) [> 3.6996 = 6.1659 < 8.0157] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)A303.CB) [> 3.4869 = 5.8116 < 7.5550] w=0.0122 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)G249.CA) [> 4.0485 = 6.7475 < 8.7717] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)P299.CB) [> 3.8999 = 6.4998 < 8.4498] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)V290.CB) [> 4.7261 = 7.8768 < 10.2399] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)L302.CB) [> 3.7621 = 6.2702 < 8.1512] w=0.0122 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)L246.CB) [> 4.6758 = 7.7930 < 10.1309] w=0.0122 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)A247.CB) [> 3.8262 = 6.3769 < 8.2900] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)I215.CB) [> 3.4170 = 5.6950 < 7.4035] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)L246.CB) [> 2.9990 = 4.9984 < 6.4979] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)A247.CB) [> 4.3725 = 7.2876 < 9.4738] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)L246.CB) [> 4.7717 = 7.9528 < 10.3386] w=0.0122 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)L248.CB) [> 3.0291 = 5.0485 < 6.5631] w=0.0122 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)G249.CA) [> 3.7877 = 6.3129 < 8.2068] w=0.0122 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)V290.CB) [> 4.5261 = 7.5435 < 9.8066] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)F244.CB) [> 4.6644 = 7.7740 < 10.1061] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)G249.CA) [> 4.0726 = 6.7877 < 8.8239] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)L248.CB) [> 4.6005 = 7.6675 < 9.9677] w=0.0122 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)L246.CB) [> 4.4485 = 7.4141 < 9.6383] w=0.0122 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)L302.CB) [> 3.6030 = 6.0049 < 7.8064] w=0.0122 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)W187.CB) [> 3.7367 = 6.2278 < 8.0961] w=0.0121 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)Y114.CB) [> 4.3978 = 7.3297 < 9.5286] w=0.0121 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)T119.CB) [> 3.6278 = 6.0463 < 7.8601] w=0.0121 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)T119.CB) [> 3.6700 = 6.1167 < 7.9517] w=0.0121 to align # Constraint # added constraint: constraint((T0333)I80.CB, (T0333)T119.CB) [> 3.2524 = 5.4207 < 7.0469] w=0.0121 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)Y194.CB) [> 4.2646 = 7.1077 < 9.2400] w=0.0121 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)N136.CB) [> 4.6299 = 7.7166 < 10.0315] w=0.0121 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)V290.CB) [> 4.3047 = 7.1745 < 9.3269] w=0.0121 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)F174.CB) [> 3.0421 = 5.0701 < 6.5911] w=0.0121 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)E172.CB) [> 3.6791 = 6.1319 < 7.9715] w=0.0121 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)P193.CB) [> 4.1552 = 6.9254 < 9.0030] w=0.0121 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)I80.CB) [> 4.5009 = 7.5015 < 9.7519] w=0.0121 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)M217.CB) [> 3.3626 = 5.6044 < 7.2857] w=0.0121 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)R135.CB) [> 3.9856 = 6.6427 < 8.6355] w=0.0121 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)Q161.CB) [> 4.4789 = 7.4648 < 9.7043] w=0.0121 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)P299.CB) [> 4.4095 = 7.3492 < 9.5540] w=0.0121 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)A280.CB) [> 3.5466 = 5.9110 < 7.6842] w=0.0121 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)L302.CB) [> 3.4842 = 5.8070 < 7.5491] w=0.0121 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)L301.CB) [> 4.0991 = 6.8318 < 8.8814] w=0.0121 to align # Constraint # added constraint: constraint((T0333)M217.CB, (T0333)Q300.CB) [> 3.5308 = 5.8847 < 7.6501] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L111.CB) [> 4.1911 = 6.9851 < 9.0806] w=0.0121 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)D110.CB) [> 3.6725 = 6.1209 < 7.9572] w=0.0121 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)H283.CB) [> 4.6990 = 7.8317 < 10.1813] w=0.0121 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)I215.CB) [> 3.8568 = 6.4281 < 8.3565] w=0.0121 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)V213.CB) [> 4.1491 = 6.9151 < 8.9896] w=0.0121 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)I215.CB) [> 4.3808 = 7.3014 < 9.4917] w=0.0121 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)M217.CB) [> 4.0563 = 6.7605 < 8.7887] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A214.CB) [> 3.8071 = 6.3452 < 8.2487] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)T216.CB) [> 3.8227 = 6.3711 < 8.2825] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)M217.CB) [> 2.6726 = 4.4543 < 5.7906] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)G218.CA) [> 3.0934 = 5.1557 < 6.7024] w=0.0121 to align # Constraint # added constraint: constraint((T0333)W187.CB, (T0333)A198.CB) [> 2.9422 = 4.9037 < 6.3748] w=0.0121 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)I215.CB) [> 3.8824 = 6.4707 < 8.4119] w=0.0121 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)V282.CB) [> 4.6108 = 7.6847 < 9.9902] w=0.0121 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)H284.CB) [> 3.0645 = 5.1075 < 6.6398] w=0.0121 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)V290.CB) [> 3.6767 = 6.1277 < 7.9661] w=0.0121 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)W191.CB) [> 4.6395 = 7.7325 < 10.0523] w=0.0120 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)A132.CB) [> 4.1772 = 6.9619 < 9.0505] w=0.0120 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)I215.CB) [> 4.1623 = 6.9372 < 9.0184] w=0.0120 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)M217.CB) [> 3.2261 = 5.3768 < 6.9898] w=0.0120 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A214.CB) [> 4.3957 = 7.3261 < 9.5240] w=0.0120 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)A214.CB) [> 4.0349 = 6.7249 < 8.7424] w=0.0120 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)E212.CB) [> 4.2491 = 7.0819 < 9.2064] w=0.0120 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)Q137.CB) [> 4.4490 = 7.4150 < 9.6395] w=0.0120 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)Y194.CB) [> 4.4984 = 7.4973 < 9.7465] w=0.0120 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)L246.CB) [> 4.0081 = 6.6802 < 8.6842] w=0.0120 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)V290.CB) [> 3.7439 = 6.2398 < 8.1118] w=0.0120 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)L246.CB) [> 4.5403 = 7.5672 < 9.8373] w=0.0120 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)A34.CB) [> 3.3845 = 5.6409 < 7.3331] w=0.0119 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)P193.CB) [> 4.2667 = 7.1112 < 9.2445] w=0.0117 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)Y194.CB) [> 3.4140 = 5.6900 < 7.3970] w=0.0117 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)G196.CA) [> 3.9478 = 6.5796 < 8.5535] w=0.0117 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)A247.CB) [> 3.7841 = 6.3068 < 8.1988] w=0.0117 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)T216.CB) [> 3.6960 = 6.1599 < 8.0079] w=0.0117 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)F174.CB) [> 3.9068 = 6.5113 < 8.4648] w=0.0117 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)W191.CB) [> 3.1751 = 5.2918 < 6.8794] w=0.0117 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)V192.CB) [> 3.7668 = 6.2780 < 8.1614] w=0.0117 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)W191.CB) [> 4.2661 = 7.1102 < 9.2433] w=0.0117 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)P193.CB) [> 3.6298 = 6.0497 < 7.8647] w=0.0117 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)Y194.CB) [> 4.3551 = 7.2585 < 9.4361] w=0.0117 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)P193.CB) [> 3.8625 = 6.4376 < 8.3688] w=0.0117 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)Y194.CB) [> 3.6734 = 6.1224 < 7.9591] w=0.0117 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)Y194.CB) [> 3.5244 = 5.8740 < 7.6362] w=0.0117 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)G196.CA) [> 4.7281 = 7.8802 < 10.2443] w=0.0117 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)G196.CA) [> 3.8641 = 6.4402 < 8.3722] w=0.0117 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)F244.CB) [> 3.7771 = 6.2952 < 8.1838] w=0.0117 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)V245.CB) [> 3.3032 = 5.5054 < 7.1569] w=0.0117 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)G249.CA) [> 3.0449 = 5.0749 < 6.5974] w=0.0117 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)Q161.CB) [> 4.6707 = 7.7844 < 10.1198] w=0.0116 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)L325.CB) [> 4.7441 = 7.9069 < 10.2789] w=0.0112 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)I323.CB) [> 4.4758 = 7.4597 < 9.6976] w=0.0112 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)L301.CB) [> 4.3351 = 7.2252 < 9.3928] w=0.0079 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)Q300.CB) [> 3.7259 = 6.2098 < 8.0728] w=0.0079 to align # Constraint # added constraint: constraint((T0333)L246.CB, (T0333)A303.CB) [> 2.6056 = 4.3426 < 5.6454] w=0.0079 to align # Constraint # added constraint: constraint((T0333)A247.CB, (T0333)L301.CB) [> 2.9132 = 4.8553 < 6.3119] w=0.0073 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)W187.CB) [> 3.8440 = 6.4066 < 8.3286] w=0.0067 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)Q161.CB) [> 4.4901 = 7.4835 < 9.7286] w=0.0067 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)E212.CB) [> 4.6924 = 7.8206 < 10.1668] w=0.0067 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)D243.CB) [> 2.6023 = 4.3372 < 5.6383] w=0.0067 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)L246.CB) [> 4.0209 = 6.7015 < 8.7120] w=0.0062 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V192.CB) [> 4.2194 = 7.0324 < 9.1420] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)W191.CB) [> 4.1712 = 6.9520 < 9.0376] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)Q161.CB) [> 4.3650 = 7.2751 < 9.4576] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)P193.CB) [> 4.3850 = 7.3083 < 9.5008] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)V133.CB) [> 4.0563 = 6.7604 < 8.7886] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)P193.CB) [> 4.3092 = 7.1820 < 9.3366] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)W191.CB) [> 4.3343 = 7.2239 < 9.3910] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)E172.CB) [> 3.5401 = 5.9001 < 7.6702] w=0.0061 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)V290.CB) [> 4.6915 = 7.8192 < 10.1650] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)V290.CB) [> 4.7127 = 7.8545 < 10.2108] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)Q161.CB) [> 4.7576 = 7.9294 < 10.3082] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q134.CB, (T0333)F174.CB) [> 4.3152 = 7.1920 < 9.3496] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)F174.CB) [> 4.0189 = 6.6982 < 8.7077] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)E172.CB) [> 4.4530 = 7.4217 < 9.6482] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)Q161.CB) [> 4.7564 = 7.9273 < 10.3055] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)H283.CB) [> 4.4421 = 7.4035 < 9.6245] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)V281.CB) [> 4.3194 = 7.1990 < 9.3586] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)G196.CA) [> 4.5877 = 7.6461 < 9.9399] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)F174.CB) [> 4.2479 = 7.0798 < 9.2038] w=0.0061 to align # Constraint # added constraint: constraint((T0333)H284.CB, (T0333)Q300.CB) [> 3.7635 = 6.2726 < 8.1543] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V282.CB, (T0333)P299.CB) [> 4.4471 = 7.4118 < 9.6353] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)V213.CB) [> 4.7945 = 7.9908 < 10.3880] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)W191.CB) [> 3.4720 = 5.7867 < 7.5227] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)D243.CB) [> 4.0332 = 6.7221 < 8.7387] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A132.CB) [> 4.3581 = 7.2635 < 9.4426] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)L248.CB) [> 2.2977 = 3.8296 < 4.9785] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)Y194.CB) [> 4.3511 = 7.2518 < 9.4273] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)L248.CB) [> 3.9668 = 6.6113 < 8.5947] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)G117.CA) [> 4.7116 = 7.8527 < 10.2085] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)R135.CB) [> 4.7944 = 7.9907 < 10.3879] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)A198.CB) [> 3.7618 = 6.2697 < 8.1507] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G218.CA, (T0333)V245.CB) [> 4.6829 = 7.8049 < 10.1464] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)L246.CB) [> 4.4014 = 7.3357 < 9.5364] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)E212.CB) [> 3.1843 = 5.3071 < 6.8993] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V213.CB) [> 3.4660 = 5.7767 < 7.5097] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)A214.CB) [> 3.8866 = 6.4776 < 8.4209] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)T216.CB) [> 3.3773 = 5.6288 < 7.3174] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)A214.CB) [> 3.1333 = 5.2222 < 6.7888] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)G218.CA) [> 4.7840 = 7.9733 < 10.3653] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)A198.CB) [> 4.3825 = 7.3042 < 9.4955] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)A214.CB) [> 3.8298 = 6.3831 < 8.2980] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)I215.CB) [> 3.8439 = 6.4064 < 8.3284] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)L302.CB) [> 4.4943 = 7.4905 < 9.7377] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)V213.CB) [> 3.0693 = 5.1156 < 6.6502] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)Q137.CB) [> 4.2668 = 7.1114 < 9.2448] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)V290.CB) [> 3.6614 = 6.1024 < 7.9331] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)P193.CB) [> 4.0193 = 6.6988 < 8.7085] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)V192.CB) [> 2.6607 = 4.4345 < 5.7648] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)V192.CB) [> 3.7551 = 6.2585 < 8.1361] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)M217.CB) [> 4.6347 = 7.7245 < 10.0418] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)M217.CB) [> 3.9517 = 6.5862 < 8.5621] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)M217.CB) [> 3.6437 = 6.0729 < 7.8948] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)W191.CB) [> 4.3478 = 7.2463 < 9.4203] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)P193.CB) [> 3.6841 = 6.1401 < 7.9822] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)E172.CB) [> 4.5443 = 7.5738 < 9.8459] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)E172.CB) [> 4.3523 = 7.2538 < 9.4300] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)E172.CB) [> 2.8254 = 4.7089 < 6.1216] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)W191.CB) [> 4.5840 = 7.6400 < 9.9321] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)F174.CB) [> 4.3955 = 7.3259 < 9.5236] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)W191.CB) [> 3.1758 = 5.2930 < 6.8808] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)W191.CB) [> 4.7110 = 7.8517 < 10.2072] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V192.CB) [> 3.2709 = 5.4515 < 7.0869] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V213.CB, (T0333)I323.CB) [> 3.3825 = 5.6375 < 7.3288] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)I323.CB) [> 4.4545 = 7.4242 < 9.6515] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A214.CB, (T0333)L325.CB) [> 4.6057 = 7.6761 < 9.9790] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I215.CB, (T0333)L325.CB) [> 3.4242 = 5.7071 < 7.4192] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)E172.CB) [> 4.0274 = 6.7123 < 8.7260] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)Y194.CB) [> 3.6079 = 6.0132 < 7.8171] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)A198.CB) [> 2.7281 = 4.5468 < 5.9109] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)Q300.CB) [> 3.7348 = 6.2247 < 8.0922] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)L301.CB) [> 4.3000 = 7.1666 < 9.3166] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)L302.CB) [> 3.8347 = 6.3911 < 8.3084] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)A303.CB) [> 3.3733 = 5.6222 < 7.3088] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)P299.CB) [> 4.7641 = 7.9401 < 10.3221] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)P299.CB) [> 3.1604 = 5.2674 < 6.8476] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)V192.CB) [> 3.2676 = 5.4460 < 7.0798] w=0.0061 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)V213.CB) [> 4.5771 = 7.6285 < 9.9170] w=0.0061 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)E212.CB) [> 3.7571 = 6.2619 < 8.1404] w=0.0061 to align # Constraint # added constraint: constraint((T0333)R135.CB, (T0333)E212.CB) [> 4.3412 = 7.2353 < 9.4059] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)M217.CB) [> 4.2677 = 7.1129 < 9.2467] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)A214.CB) [> 2.4335 = 4.0559 < 5.2726] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)T119.CB) [> 4.4874 = 7.4790 < 9.7227] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)A303.CB) [> 4.2043 = 7.0072 < 9.1094] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S5.CB, (T0333)L302.CB) [> 3.6464 = 6.0774 < 7.9006] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)A303.CB) [> 4.7561 = 7.9268 < 10.3048] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L302.CB) [> 2.7810 = 4.6349 < 6.0254] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)L301.CB) [> 4.1880 = 6.9800 < 9.0740] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)Q300.CB) [> 3.9294 = 6.5490 < 8.5136] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)I31.CB) [> 2.9923 = 4.9872 < 6.4834] w=0.0061 to align # Constraint # added constraint: constraint((T0333)S6.CB, (T0333)L325.CB) [> 4.0938 = 6.8229 < 8.8698] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)M217.CB) [> 4.5890 = 7.6484 < 9.9429] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)V281.CB) [> 4.3374 = 7.2289 < 9.3976] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)H283.CB) [> 3.9305 = 6.5509 < 8.5162] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)H283.CB) [> 4.3058 = 7.1763 < 9.3292] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)L325.CB) [> 3.6839 = 6.1398 < 7.9818] w=0.0061 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)E212.CB) [> 3.8502 = 6.4170 < 8.3421] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)A198.CB) [> 2.4558 = 4.0930 < 5.3209] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)G249.CA) [> 4.0194 = 6.6989 < 8.7086] w=0.0061 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)T216.CB) [> 4.1117 = 6.8529 < 8.9088] w=0.0061 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)I215.CB) [> 4.7125 = 7.8541 < 10.2103] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)Q161.CB) [> 2.8679 = 4.7798 < 6.2137] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)G249.CA) [> 4.1443 = 6.9071 < 8.9793] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)G249.CA) [> 3.6071 = 6.0118 < 7.8154] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)F174.CB) [> 4.6958 = 7.8263 < 10.1741] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)M217.CB) [> 4.1435 = 6.9059 < 8.9777] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)A214.CB) [> 2.6810 = 4.4683 < 5.8088] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A198.CB, (T0333)V213.CB) [> 3.2100 = 5.3500 < 6.9549] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)V213.CB) [> 3.2930 = 5.4883 < 7.1348] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)F174.CB) [> 4.5188 = 7.5314 < 9.7908] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)P193.CB) [> 3.6040 = 6.0066 < 7.8086] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)E115.CB) [> 4.3474 = 7.2457 < 9.4194] w=0.0061 to align # Constraint # added constraint: constraint((T0333)P193.CB, (T0333)D243.CB) [> 4.5002 = 7.5003 < 9.7504] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)R135.CB) [> 3.6671 = 6.1118 < 7.9454] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)A198.CB) [> 4.5710 = 7.6182 < 9.9037] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A198.CB) [> 4.2167 = 7.0278 < 9.1361] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)G196.CA) [> 4.7562 = 7.9270 < 10.3052] w=0.0061 to align # Constraint # added constraint: constraint((T0333)I16.CB, (T0333)V29.CB) [> 2.9780 = 4.9634 < 6.4524] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F244.CB, (T0333)H284.CB) [> 3.5483 = 5.9138 < 7.6880] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)T279.CB) [> 3.2016 = 5.3360 < 6.9368] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)A280.CB) [> 3.9933 = 6.6556 < 8.6522] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)T279.CB) [> 4.5862 = 7.6436 < 9.9367] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)V281.CB) [> 4.1778 = 6.9629 < 9.0518] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)H283.CB) [> 4.3971 = 7.3286 < 9.5271] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)H283.CB) [> 4.0007 = 6.6679 < 8.6682] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)H283.CB) [> 3.0110 = 5.0183 < 6.5237] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q137.CB, (T0333)A198.CB) [> 4.1020 = 6.8366 < 8.8876] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)V120.CB) [> 4.2568 = 7.0947 < 9.2232] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)V245.CB) [> 4.1226 = 6.8710 < 8.9323] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)L301.CB) [> 2.8999 = 4.8332 < 6.2832] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)L302.CB) [> 4.1663 = 6.9438 < 9.0269] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)L248.CB) [> 4.1866 = 6.9777 < 9.0711] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)L301.CB) [> 3.1147 = 5.1912 < 6.7486] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L111.CB, (T0333)A247.CB) [> 4.4407 = 7.4011 < 9.6215] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)A247.CB) [> 4.2252 = 7.0420 < 9.1546] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)L248.CB) [> 4.6842 = 7.8071 < 10.1492] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)A247.CB) [> 3.3908 = 5.6513 < 7.3467] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)A303.CB) [> 4.1120 = 6.8534 < 8.9094] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)L248.CB) [> 4.0890 = 6.8149 < 8.8594] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)L246.CB) [> 4.4642 = 7.4403 < 9.6724] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)A247.CB) [> 4.6975 = 7.8292 < 10.1779] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)L248.CB) [> 2.6470 = 4.4116 < 5.7351] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)A303.CB) [> 2.6688 = 4.4480 < 5.7824] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)L301.CB) [> 4.2229 = 7.0382 < 9.1497] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)A303.CB) [> 4.0918 = 6.8197 < 8.8656] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)L246.CB) [> 4.1652 = 6.9420 < 9.0246] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)L248.CB) [> 3.9299 = 6.5499 < 8.5148] w=0.0061 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)A303.CB) [> 3.9316 = 6.5526 < 8.5184] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)T216.CB) [> 3.0610 = 5.1017 < 6.6321] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)V245.CB) [> 4.5605 = 7.6008 < 9.8811] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)L246.CB) [> 3.5457 = 5.9096 < 7.6824] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L12.CB, (T0333)G249.CA) [> 3.1877 = 5.3128 < 6.9066] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)A247.CB) [> 4.4977 = 7.4962 < 9.7451] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)L248.CB) [> 4.6701 = 7.7836 < 10.1186] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)G249.CA) [> 3.7583 = 6.2638 < 8.1430] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)A303.CB) [> 4.6701 = 7.7835 < 10.1185] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)V112.CB) [> 3.2773 = 5.4622 < 7.1009] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)V113.CB) [> 4.7519 = 7.9197 < 10.2957] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)Q300.CB) [> 2.0349 = 3.3915 < 4.4089] w=0.0061 to align # Constraint # added constraint: constraint((T0333)D243.CB, (T0333)L301.CB) [> 4.4280 = 7.3800 < 9.5941] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)Q300.CB) [> 4.1604 = 6.9341 < 9.0143] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L248.CB, (T0333)L301.CB) [> 3.6341 = 6.0569 < 7.8740] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)L301.CB) [> 4.5361 = 7.5602 < 9.8283] w=0.0061 to align # Constraint # added constraint: constraint((T0333)G249.CA, (T0333)L302.CB) [> 4.4359 = 7.3931 < 9.6110] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)W191.CB) [> 3.8368 = 6.3946 < 8.3130] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)I215.CB) [> 4.5671 = 7.6119 < 9.8955] w=0.0061 to align # Constraint # added constraint: constraint((T0333)A132.CB, (T0333)T216.CB) [> 3.8337 = 6.3896 < 8.3064] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)T216.CB) [> 4.3784 = 7.2973 < 9.4865] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)F244.CB) [> 4.7006 = 7.8343 < 10.1846] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)N136.CB) [> 3.9454 = 6.5757 < 8.5484] w=0.0061 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)V213.CB) [> 4.2376 = 7.0626 < 9.1814] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V290.CB, (T0333)P299.CB) [> 3.6957 = 6.1594 < 8.0072] w=0.0061 to align # Constraint # added constraint: constraint((T0333)V245.CB, (T0333)A303.CB) [> 4.3460 = 7.2433 < 9.4163] w=0.0061 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)D243.CB) [> 4.6962 = 7.8270 < 10.1751] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)L325.CB) [> 4.1662 = 6.9436 < 9.0267] w=0.0061 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)Q300.CB) [> 3.7150 = 6.1916 < 8.0491] w=0.0061 to align # Constraint # added constraint: constraint((T0333)E212.CB, (T0333)L325.CB) [> 3.6876 = 6.1461 < 7.9899] w=0.0061 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)E35.CB) [> 4.7678 = 7.9463 < 10.3302] w=0.0060 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)W191.CB) [> 3.7747 = 6.2912 < 8.1785] w=0.0060 to align # Constraint # added constraint: constraint((T0333)S138.CB, (T0333)A198.CB) [> 4.0032 = 6.6720 < 8.6735] w=0.0060 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)V192.CB) [> 3.4704 = 5.7840 < 7.5192] w=0.0060 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)Y194.CB) [> 4.3967 = 7.3279 < 9.5263] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)V192.CB) [> 4.4449 = 7.4082 < 9.6306] w=0.0060 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)A247.CB) [> 3.3558 = 5.5931 < 7.2710] w=0.0060 to align # Constraint # added constraint: constraint((T0333)Y114.CB, (T0333)V245.CB) [> 2.6719 = 4.4532 < 5.7892] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)D243.CB) [> 4.2099 = 7.0165 < 9.1214] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)V245.CB) [> 4.3710 = 7.2851 < 9.4706] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)L246.CB) [> 3.2312 = 5.3854 < 7.0010] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E115.CB, (T0333)L248.CB) [> 4.0698 = 6.7830 < 8.8179] w=0.0060 to align # Constraint # added constraint: constraint((T0333)D110.CB, (T0333)R135.CB) [> 3.6675 = 6.1125 < 7.9463] w=0.0060 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)A132.CB) [> 4.3959 = 7.3264 < 9.5244] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)A132.CB) [> 3.5119 = 5.8532 < 7.6091] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)Q161.CB) [> 3.4373 = 5.7289 < 7.4475] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)A214.CB) [> 4.2881 = 7.1469 < 9.2909] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)I215.CB) [> 4.7061 = 7.8434 < 10.1965] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)T216.CB) [> 3.5226 = 5.8710 < 7.6323] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A32.CB, (T0333)M217.CB) [> 4.2129 = 7.0216 < 9.1280] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)D110.CB) [> 3.4422 = 5.7370 < 7.4581] w=0.0060 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)Q161.CB) [> 4.4580 = 7.4301 < 9.6591] w=0.0060 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)A214.CB) [> 4.5557 = 7.5929 < 9.8708] w=0.0060 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)I215.CB) [> 3.2223 = 5.3706 < 6.9817] w=0.0060 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)M217.CB) [> 4.1529 = 6.9215 < 8.9979] w=0.0060 to align # Constraint # added constraint: constraint((T0333)A34.CB, (T0333)G196.CA) [> 4.3986 = 7.3310 < 9.5302] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)Q137.CB) [> 4.4251 = 7.3751 < 9.5876] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)G196.CA) [> 4.6178 = 7.6963 < 10.0052] w=0.0060 to align # Constraint # added constraint: constraint((T0333)E35.CB, (T0333)A198.CB) [> 4.7888 = 7.9813 < 10.3757] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)Q161.CB) [> 4.7121 = 7.8535 < 10.2096] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)E172.CB) [> 2.8364 = 4.7273 < 6.1455] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)T216.CB) [> 4.4239 = 7.3732 < 9.5852] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)M217.CB) [> 3.7197 = 6.1995 < 8.0594] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V33.CB, (T0333)G218.CA) [> 3.1938 = 5.3230 < 6.9199] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L2.CB, (T0333)V120.CB) [> 4.7556 = 7.9260 < 10.3038] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)A132.CB) [> 3.5332 = 5.8887 < 7.6553] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)Q161.CB) [> 3.8787 = 6.4645 < 8.4039] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V213.CB) [> 4.1359 = 6.8932 < 8.9612] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)A214.CB) [> 2.3574 = 3.9291 < 5.1078] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)I215.CB) [> 4.3044 = 7.1740 < 9.3263] w=0.0060 to align # Constraint # added constraint: constraint((T0333)I31.CB, (T0333)V120.CB) [> 4.5686 = 7.6143 < 9.8985] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)E212.CB) [> 4.2856 = 7.1427 < 9.2855] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)V213.CB) [> 2.7750 = 4.6250 < 6.0125] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)A214.CB) [> 4.0926 = 6.8210 < 8.8672] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)I215.CB) [> 3.7397 = 6.2329 < 8.1027] w=0.0060 to align # Constraint # added constraint: constraint((T0333)L30.CB, (T0333)V120.CB) [> 4.6602 = 7.7670 < 10.0972] w=0.0060 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)M217.CB) [> 2.1126 = 3.5210 < 4.5773] w=0.0060 to align # Constraint # added constraint: constraint((T0333)Q116.CB, (T0333)G218.CA) [> 3.8200 = 6.3667 < 8.2767] w=0.0060 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)Q161.CB) [> 4.6571 = 7.7618 < 10.0903] w=0.0060 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)M217.CB) [> 3.6740 = 6.1233 < 7.9603] w=0.0060 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)G218.CA) [> 3.7534 = 6.2557 < 8.1323] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)Q161.CB) [> 3.7463 = 6.2438 < 8.1169] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)G218.CA) [> 3.7057 = 6.1762 < 8.0290] w=0.0060 to align # Constraint # added constraint: constraint((T0333)N136.CB, (T0333)G218.CA) [> 4.5528 = 7.5880 < 9.8644] w=0.0060 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)V213.CB) [> 4.7277 = 7.8795 < 10.2434] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)T216.CB) [> 4.1456 = 6.9094 < 8.9822] w=0.0060 to align # Constraint # added constraint: constraint((T0333)V4.CB, (T0333)V213.CB) [> 3.9338 = 6.5564 < 8.5233] w=0.0060 to align # Constraint # added constraint: constraint((T0333)F3.CB, (T0333)T216.CB) [> 3.4045 = 5.6742 < 7.3765] w=0.0060 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)A214.CB) [> 4.1249 = 6.8748 < 8.9373] w=0.0060 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)E212.CB) [> 3.0787 = 5.1312 < 6.6705] w=0.0060 to align # Constraint # added constraint: constraint((T0333)M1.CB, (T0333)S138.CB) [> 4.1716 = 6.9527 < 9.0385] w=0.0059 to align # Constraint # added constraint: constraint((T0333)V113.CB, (T0333)V290.CB) [> 4.6908 = 7.8179 < 10.1633] w=0.0059 to align # Constraint # added constraint: constraint((T0333)V133.CB, (T0333)V290.CB) [> 4.1110 = 6.8517 < 8.9073] w=0.0059 to align # Constraint # added constraint: constraint((T0333)L15.CB, (T0333)V120.CB) [> 4.7901 = 7.9834 < 10.3785] w=0.0059 to align # Constraint # added constraint: constraint((T0333)Q161.CB, (T0333)D243.CB) [> 4.0115 = 6.6858 < 8.6916] w=0.0059 to align # Constraint # added constraint: constraint((T0333)A118.CB, (T0333)G196.CA) [> 3.5017 = 5.8361 < 7.5869] w=0.0056 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)A198.CB) [> 4.5658 = 7.6097 < 9.8927] w=0.0056 to align # Constraint # added constraint: constraint((T0333)G117.CA, (T0333)G196.CA) [> 4.0833 = 6.8056 < 8.8472] w=0.0056 to align # Constraint # added constraint: constraint((T0333)V112.CB, (T0333)F174.CB) [> 3.2108 = 5.3514 < 6.9568] w=0.0056 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)F244.CB) [> 4.7725 = 7.9542 < 10.3405] w=0.0056 to align # Constraint # added constraint: constraint((T0333)L18.CB, (T0333)V33.CB) [> 4.7460 = 7.9099 < 10.2829] w=0.0018 to align # Constraint # added constraint: constraint((T0333)T119.CB, (T0333)I323.CB) [> 4.4320 = 7.3867 < 9.6028] w=0.0006 to align # Constraint # added constraint: constraint((T0333)V29.CB, (T0333)Y194.CB) [> 3.9409 = 6.5682 < 8.5387] w=0.0006 to align # Constraint # added constraint: constraint((T0333)V192.CB, (T0333)P299.CB) [> 3.1581 = 5.2634 < 6.8424] w=0.0006 to align # Constraint # added constraint: constraint((T0333)Y194.CB, (T0333)E212.CB) [> 2.9822 = 4.9704 < 6.4615] w=0.0006 to align # Constraint # added constraint: constraint((T0333)G196.CA, (T0333)A303.CB) [> 4.4399 = 7.3999 < 9.6199] w=0.0006 to align # Constraint # added constraint: constraint((T0333)V120.CB, (T0333)I323.CB) [> 3.3973 = 5.6622 < 7.3609] w=0.0006 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)L301.CB) [> 3.2747 = 5.4579 < 7.0953] w=0.0006 to align # Constraint # added constraint: constraint((T0333)W191.CB, (T0333)L325.CB) [> 4.5679 = 7.6133 < 9.8972] w=0.0006 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)P299.CB) [> 2.8577 = 4.7628 < 6.1917] w=0.0006 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)Q300.CB) [> 4.7372 = 7.8953 < 10.2639] w=0.0006 to align # Constraint # added constraint: constraint((T0333)E172.CB, (T0333)L325.CB) [> 4.2898 = 7.1496 < 9.2944] w=0.0006 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)P299.CB) [> 3.3267 = 5.5445 < 7.2079] w=0.0006 to align # Constraint # added constraint: constraint((T0333)F174.CB, (T0333)L325.CB) [> 2.9917 = 4.9862 < 6.4821] w=0.0006 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0333/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0333/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 354 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 339 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 344 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 366 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 347 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 345 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 345 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 329 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 338 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 328 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 Skipped atom 1245, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 Skipped atom 189, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 563, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 872, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 1341, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 Skipped atom 1337, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 329 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 Skipped atom 201, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 835, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 1296, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 368 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.6925 model score 0.6486 model score 0.6213 model score 0.5906 model score 0.5985 model score 0.6156 model score 0.6143 model score 0.4172 model score 0.6188 model score 0.6131 model score 0.5657 model score 0.9763 model score 0.5846 model score 0.4172 model score 0.6129 model score 0.3400 model score 0.7464 model score 0.3847 model score 0.4128 model score 0.3746 model score 1.5473 model score 1.7698 model score 1.4419 model score 1.7592 model score 1.8072 model score 0.3564 model score 0.9433 model score 0.9958 model score 0.9483 model score 0.9912 model score 0.9164 model score 0.3746 model score 0.3704 model score 0.3901 model score 0.3499 model score 0.3982 model score 1.4958 model score 0.4127 model score 0.3798 model score 0.5357 model score 0.6033 model score 0.5989 model score 1.2726 model score 1.2714 model score 1.2731 model score 1.2751 model score 1.2746 model score 0.3982 model score 1.0197 model score 0.4797 model score 0.6641 model score 0.9853 model score 0.3943 model score 0.3704 model score 0.3982 model score 0.3982 model score 1.0197 model score 0.7464 model score 0.3331 model score 0.3847 model score 0.4128 model score 0.3746 model score 1.2767 model score 1.2728 model score 1.2740 model score 1.2765 model score 1.2834 model score 1.2763 model score 1.2751 model score 1.2768 model score 1.2727 model score 1.2792 model score 2.3169 model score 2.2743 model score 2.5034 model score 2.4408 model score 2.4653 model score 0.9163 model score 1.0405 model score 0.5971 model score 0.7419 model score 0.8222 model score 1.2744 model score 1.2749 model score 1.2712 model score 1.2761 model score 1.2779 model score 0.8765 model score 0.8262 model score 0.4562 model score 0.9333 model score 0.9645 model score 0.4878 model score 0.3583 model score 0.3564 model score 0.6753 model score 0.4183 model score 0.9280 model score 0.8034 model score 0.6899 model score 0.5740 model score 0.3757 model score 0.4215 model score 0.3411 model score 0.3573 model score 0.4443 model score 0.4017 model score 0.4977 model score 1.7597 model score 1.9997 model score 0.4559 model score 0.8525 model score 0.3714 model score 0.4977 model score 1.7775 model score 0.3195 model score 0.3014 model score 0.3168 model score 0.2961 model score 0.3470 model score 0.9152 model score 1.9048 model score 2.1385 model score 1.9043 model score 2.0405 model score 2.0583 model score 0.4355 model score 0.4264 model score 0.4308 model score 0.4264 model score 0.4249 model score 0.4339 model score 0.4308 model score 0.3879 model score 0.6313 model score 0.4528 model score 0.4017 model score 0.3880 model score 0.3605 model score 0.4143 model score 0.4613 model score 0.7686 model score 0.3898 model score 0.4978 model score 0.3775 model score 0.3732 model score 0.5468 model score 0.3880 model score 0.3880 model score 0.3880 model score 0.4210 model score 0.4611 model score 0.3554 model score 0.6301 model score 0.9164 model score 0.5511 model score 0.4660 model score 0.4646 model score 0.9054 model score 0.4855 model score 0.5068 model score 0.3759 model score 0.4617 model score 0.8958 model score 0.4650 model score 0.4914 model score 0.3556 model score 0.3692 model score 0.3977 model score 0.4210 model score 0.4745 model score 0.4611 model score 0.5177 model score 0.9644 model score 0.9478 model score 0.9350 model score 1.2742 model score 1.2709 model score 1.2692 model score 1.2708 model score 1.2701 model score 1.2745 model score 1.2714 model score 1.2712 model score 1.2725 model score 1.2714 model score 0.4952 model score 0.5977 model score 0.3315 model score 0.2969 model score 0.2689 model score 0.3554 model score 0.5335 model score 0.6414 model score 0.3757 model score 0.7468 model score 0.3663 model score 0.5166 model score 0.5424 model score 0.3998 model score 0.6218 model score 0.3452 model score 0.5467 model score 0.5735 model score 0.3645 model score 1.0639 model score 1.2750 model score 1.2712 model score 1.2697 model score 1.2709 model score 0.4067 model score 1.2750 model score 1.2712 model score 1.2697 model score 1.2709 model score 0.3766 model score 0.3495 model score 0.3413 model score 0.3584 model score 0.3319 model score 0.3782 model score 0.5258 model score 1.2733 model score 1.2702 model score 1.2712 model score 1.2727 model score 1.2737 model score 1.2723 model score 1.2730 model score 1.2734 model score 1.2733 model score 1.2764 model score 0.4983 model score 0.3530 model score 0.5351 model score 0.5221 model score 0.6901 model score 0.3330 model score 0.5443 model score 0.3712 model score 1.6003 model score 1.7013 model score 0.4620 model score 0.5198 model score 0.4257 model score 0.5174 model score 0.4150 model score 0.8543 model score 0.9152 model score 1.0217 model score 0.5348 model score 1.1465 model score 1.0369 model score 0.4227 USE_META, weight: 0.8294 cost: 0.6925 min: 0.2689 max: 2.5034 USE_META, weight: 0.8471 cost: 0.6486 min: 0.2689 max: 2.5034 USE_META, weight: 0.8581 cost: 0.6213 min: 0.2689 max: 2.5034 USE_META, weight: 0.8704 cost: 0.5906 min: 0.2689 max: 2.5034 USE_META, weight: 0.8672 cost: 0.5985 min: 0.2689 max: 2.5034 USE_META, weight: 0.8604 cost: 0.6156 min: 0.2689 max: 2.5034 USE_META, weight: 0.8609 cost: 0.6143 min: 0.2689 max: 2.5034 USE_META, weight: 0.9403 cost: 0.4172 min: 0.2689 max: 2.5034 USE_META, weight: 0.8591 cost: 0.6188 min: 0.2689 max: 2.5034 USE_META, weight: 0.8614 cost: 0.6131 min: 0.2689 max: 2.5034 USE_META, weight: 0.8805 cost: 0.5657 min: 0.2689 max: 2.5034 USE_META, weight: 0.7151 cost: 0.9763 min: 0.2689 max: 2.5034 USE_META, weight: 0.8728 cost: 0.5846 min: 0.2689 max: 2.5034 USE_META, weight: 0.9403 cost: 0.4172 min: 0.2689 max: 2.5034 USE_META, weight: 0.8614 cost: 0.6129 min: 0.2689 max: 2.5034 USE_META, weight: 0.9714 cost: 0.3400 min: 0.2689 max: 2.5034 USE_META, weight: 0.8077 cost: 0.7464 min: 0.2689 max: 2.5034 USE_META, weight: 0.9534 cost: 0.3847 min: 0.2689 max: 2.5034 USE_META, weight: 0.9421 cost: 0.4128 min: 0.2689 max: 2.5034 USE_META, weight: 0.9574 cost: 0.3746 min: 0.2689 max: 2.5034 USE_META, weight: 0.4851 cost: 1.5473 min: 0.2689 max: 2.5034 USE_META, weight: 0.3955 cost: 1.7698 min: 0.2689 max: 2.5034 USE_META, weight: 0.5276 cost: 1.4419 min: 0.2689 max: 2.5034 USE_META, weight: 0.3997 cost: 1.7592 min: 0.2689 max: 2.5034 USE_META, weight: 0.3804 cost: 1.8072 min: 0.2689 max: 2.5034 USE_META, weight: 0.9648 cost: 0.3564 min: 0.2689 max: 2.5034 USE_META, weight: 0.7284 cost: 0.9433 min: 0.2689 max: 2.5034 USE_META, weight: 0.7072 cost: 0.9958 min: 0.2689 max: 2.5034 USE_META, weight: 0.7264 cost: 0.9483 min: 0.2689 max: 2.5034 USE_META, weight: 0.7091 cost: 0.9912 min: 0.2689 max: 2.5034 USE_META, weight: 0.7392 cost: 0.9164 min: 0.2689 max: 2.5034 USE_META, weight: 0.9574 cost: 0.3746 min: 0.2689 max: 2.5034 USE_META, weight: 0.9591 cost: 0.3704 min: 0.2689 max: 2.5034 USE_META, weight: 0.9512 cost: 0.3901 min: 0.2689 max: 2.5034 USE_META, weight: 0.9674 cost: 0.3499 min: 0.2689 max: 2.5034 USE_META, weight: 0.9479 cost: 0.3982 min: 0.2689 max: 2.5034 USE_META, weight: 0.5058 cost: 1.4958 min: 0.2689 max: 2.5034 USE_META, weight: 0.9421 cost: 0.4127 min: 0.2689 max: 2.5034 USE_META, weight: 0.9553 cost: 0.3798 min: 0.2689 max: 2.5034 USE_META, weight: 0.8925 cost: 0.5357 min: 0.2689 max: 2.5034 USE_META, weight: 0.8653 cost: 0.6033 min: 0.2689 max: 2.5034 USE_META, weight: 0.8671 cost: 0.5989 min: 0.2689 max: 2.5034 USE_META, weight: 0.5958 cost: 1.2726 min: 0.2689 max: 2.5034 USE_META, weight: 0.5962 cost: 1.2714 min: 0.2689 max: 2.5034 USE_META, weight: 0.5955 cost: 1.2731 min: 0.2689 max: 2.5034 USE_META, weight: 0.5947 cost: 1.2751 min: 0.2689 max: 2.5034 USE_META, weight: 0.5950 cost: 1.2746 min: 0.2689 max: 2.5034 USE_META, weight: 0.9479 cost: 0.3982 min: 0.2689 max: 2.5034 USE_META, weight: 0.6976 cost: 1.0197 min: 0.2689 max: 2.5034 USE_META, weight: 0.9151 cost: 0.4797 min: 0.2689 max: 2.5034 USE_META, weight: 0.8408 cost: 0.6641 min: 0.2689 max: 2.5034 USE_META, weight: 0.7115 cost: 0.9853 min: 0.2689 max: 2.5034 USE_META, weight: 0.9495 cost: 0.3943 min: 0.2689 max: 2.5034 USE_META, weight: 0.9591 cost: 0.3704 min: 0.2689 max: 2.5034 USE_META, weight: 0.9479 cost: 0.3982 min: 0.2689 max: 2.5034 USE_META, weight: 0.9479 cost: 0.3982 min: 0.2689 max: 2.5034 USE_META, weight: 0.6976 cost: 1.0197 min: 0.2689 max: 2.5034 USE_META, weight: 0.8077 cost: 0.7464 min: 0.2689 max: 2.5034 USE_META, weight: 0.9741 cost: 0.3331 min: 0.2689 max: 2.5034 USE_META, weight: 0.9534 cost: 0.3847 min: 0.2689 max: 2.5034 USE_META, weight: 0.9421 cost: 0.4128 min: 0.2689 max: 2.5034 USE_META, weight: 0.9574 cost: 0.3746 min: 0.2689 max: 2.5034 USE_META, weight: 0.5941 cost: 1.2767 min: 0.2689 max: 2.5034 USE_META, weight: 0.5957 cost: 1.2728 min: 0.2689 max: 2.5034 USE_META, weight: 0.5952 cost: 1.2740 min: 0.2689 max: 2.5034 USE_META, weight: 0.5942 cost: 1.2765 min: 0.2689 max: 2.5034 USE_META, weight: 0.5914 cost: 1.2834 min: 0.2689 max: 2.5034 USE_META, weight: 0.5942 cost: 1.2763 min: 0.2689 max: 2.5034 USE_META, weight: 0.5947 cost: 1.2751 min: 0.2689 max: 2.5034 USE_META, weight: 0.5940 cost: 1.2768 min: 0.2689 max: 2.5034 USE_META, weight: 0.5957 cost: 1.2727 min: 0.2689 max: 2.5034 USE_META, weight: 0.5931 cost: 1.2792 min: 0.2689 max: 2.5034 USE_META, weight: 0.1751 cost: 2.3169 min: 0.2689 max: 2.5034 USE_META, weight: 0.1923 cost: 2.2743 min: 0.2689 max: 2.5034 USE_META, weight: 0.1000 cost: 2.5034 min: 0.2689 max: 2.5034 USE_META, weight: 0.1252 cost: 2.4408 min: 0.2689 max: 2.5034 USE_META, weight: 0.1153 cost: 2.4653 min: 0.2689 max: 2.5034 USE_META, weight: 0.7392 cost: 0.9163 min: 0.2689 max: 2.5034 USE_META, weight: 0.6892 cost: 1.0405 min: 0.2689 max: 2.5034 USE_META, weight: 0.8678 cost: 0.5971 min: 0.2689 max: 2.5034 USE_META, weight: 0.8095 cost: 0.7419 min: 0.2689 max: 2.5034 USE_META, weight: 0.7771 cost: 0.8222 min: 0.2689 max: 2.5034 USE_META, weight: 0.5950 cost: 1.2744 min: 0.2689 max: 2.5034 USE_META, weight: 0.5948 cost: 1.2749 min: 0.2689 max: 2.5034 USE_META, weight: 0.5963 cost: 1.2712 min: 0.2689 max: 2.5034 USE_META, weight: 0.5943 cost: 1.2761 min: 0.2689 max: 2.5034 USE_META, weight: 0.5936 cost: 1.2779 min: 0.2689 max: 2.5034 USE_META, weight: 0.7553 cost: 0.8765 min: 0.2689 max: 2.5034 USE_META, weight: 0.7755 cost: 0.8262 min: 0.2689 max: 2.5034 USE_META, weight: 0.9246 cost: 0.4562 min: 0.2689 max: 2.5034 USE_META, weight: 0.7324 cost: 0.9333 min: 0.2689 max: 2.5034 USE_META, weight: 0.7198 cost: 0.9645 min: 0.2689 max: 2.5034 USE_META, weight: 0.9118 cost: 0.4878 min: 0.2689 max: 2.5034 USE_META, weight: 0.9640 cost: 0.3583 min: 0.2689 max: 2.5034 USE_META, weight: 0.9648 cost: 0.3564 min: 0.2689 max: 2.5034 USE_META, weight: 0.8363 cost: 0.6753 min: 0.2689 max: 2.5034 USE_META, weight: 0.9398 cost: 0.4183 min: 0.2689 max: 2.5034 USE_META, weight: 0.7345 cost: 0.9280 min: 0.2689 max: 2.5034 USE_META, weight: 0.7847 cost: 0.8034 min: 0.2689 max: 2.5034 USE_META, weight: 0.8304 cost: 0.6899 min: 0.2689 max: 2.5034 USE_META, weight: 0.8771 cost: 0.5740 min: 0.2689 max: 2.5034 USE_META, weight: 0.9570 cost: 0.3757 min: 0.2689 max: 2.5034 USE_META, weight: 0.9385 cost: 0.4215 min: 0.2689 max: 2.5034 USE_META, weight: 0.9709 cost: 0.3411 min: 0.2689 max: 2.5034 USE_META, weight: 0.9644 cost: 0.3573 min: 0.2689 max: 2.5034 USE_META, weight: 0.9294 cost: 0.4443 min: 0.2689 max: 2.5034 USE_META, weight: 0.9465 cost: 0.4017 min: 0.2689 max: 2.5034 USE_META, weight: 0.9078 cost: 0.4977 min: 0.2689 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0.0000 max: 21.4000 USE_EVALUE, weight: 0.9975 eval: 0.0600 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9975 eval: 0.0600 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9994 eval: 0.0145 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9994 eval: 0.0145 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9994 eval: 0.0145 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9791 eval: 0.4969 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9791 eval: 0.4969 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9791 eval: 0.4969 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9728 eval: 0.6471 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9728 eval: 0.6471 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9728 eval: 0.6471 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9714 eval: 0.6797 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9714 eval: 0.6797 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9714 eval: 0.6797 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9715 eval: 0.6782 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9715 eval: 0.6782 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9715 eval: 0.6782 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0028 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0028 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0028 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9983 eval: 0.0414 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9983 eval: 0.0414 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9983 eval: 0.0414 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9979 eval: 0.0493 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9979 eval: 0.0493 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9979 eval: 0.0493 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9998 eval: 0.0045 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9998 eval: 0.0045 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9998 eval: 0.0045 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0013 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0013 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9999 eval: 0.0013 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9996 eval: 0.0093 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9996 eval: 0.0093 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9996 eval: 0.0093 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9792 eval: 0.4946 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9792 eval: 0.4946 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9792 eval: 0.4946 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9989 eval: 0.0253 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9989 eval: 0.0253 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9989 eval: 0.0253 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9795 eval: 0.4885 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9795 eval: 0.4885 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9795 eval: 0.4885 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9819 eval: 0.4299 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9819 eval: 0.4299 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9819 eval: 0.4299 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9984 eval: 0.0383 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9984 eval: 0.0383 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9984 eval: 0.0383 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9733 eval: 0.6358 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9733 eval: 0.6358 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9733 eval: 0.6358 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9712 eval: 0.6860 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9712 eval: 0.6860 min: 0.0000 max: 21.4000 USE_EVALUE, weight: 0.9712 eval: 0.6860 min: 0.0000 max: 21.4000 Number of contacts in models: 254 Number of contacts in alignments: 189 NUMB_ALIGNS: 189 Adding 26837 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -663.3732, CN propb: -663.3732 weights: 0.1511 constraints: 2204 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 2204 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 2204 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 24633 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 24633 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 26837 # command: