# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0332/
# command:# Making conformation for sequence T0332 numbered 1 through 159
Created new target T0332 from T0332.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0332/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0332//projects/compbio/experiments/protein-predict/casp7/T0332/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0332//projects/compbio/experiments/protein-predict/casp7/T0332/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0332/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0332/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)S105.CB) [> 3.8330 = 6.3884 < 8.3049] w=1.0000 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L107.CB) [> 3.9161 = 6.5269 < 8.4849] w=0.9828 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L107.CB) [> 3.5521 = 5.9201 < 7.6962] w=0.9465 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L106.CB) [> 3.9674 = 6.6124 < 8.5962] w=0.9454 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)S34.CB) [> 3.5453 = 5.9088 < 7.6815] w=0.9213 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)V37.CB) [> 3.3765 = 5.6275 < 7.3157] w=0.9207 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L108.CB) [> 3.9404 = 6.5673 < 8.5375] w=0.9108 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G39.CA) [> 3.6706 = 6.1176 < 7.9529] w=0.8909 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)A33.CB) [> 4.0907 = 6.8178 < 8.8632] w=0.8817 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)K104.CB) [> 4.0972 = 6.8287 < 8.8773] w=0.8766 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L108.CB) [> 2.8798 = 4.7996 < 6.2395] w=0.8604 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)A33.CB) [> 3.1985 = 5.3308 < 6.9301] w=0.8529 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L108.CB) [> 4.0314 = 6.7190 < 8.7348] w=0.8447 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)L106.CB) [> 3.2272 = 5.3787 < 6.9923] w=0.8431 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L36.CB) [> 3.2544 = 5.4241 < 7.0513] w=0.8401 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)V37.CB) [> 3.9977 = 6.6628 < 8.6617] w=0.8395 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)V35.CB) [> 3.1920 = 5.3200 < 6.9160] w=0.8270 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)G39.CA) [> 3.8250 = 6.3750 < 8.2875] w=0.8169 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)S105.CB) [> 3.5794 = 5.9657 < 7.7554] w=0.8164 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L107.CB) [> 3.3359 = 5.5598 < 7.2277] w=0.8164 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)S105.CB) [> 3.4405 = 5.7342 < 7.4545] w=0.8145 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L109.CB) [> 3.4578 = 5.7630 < 7.4920] w=0.8144 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)V35.CB) [> 3.9999 = 6.6665 < 8.6665] w=0.7889 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)V38.CB) [> 3.3232 = 5.5387 < 7.2003] w=0.7886 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)A33.CB) [> 3.2561 = 5.4268 < 7.0549] w=0.7846 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)S34.CB) [> 3.6899 = 6.1498 < 7.9948] w=0.7833 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)L106.CB) [> 4.1245 = 6.8742 < 8.9365] w=0.7755 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)V37.CB) [> 4.2541 = 7.0902 < 9.2173] w=0.7748 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)L124.CB) [> 4.0047 = 6.6745 < 8.6768] w=0.7578 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)V38.CB) [> 3.9940 = 6.6566 < 8.6536] w=0.7529 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L109.CB) [> 3.3627 = 5.6045 < 7.2859] w=0.7483 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)L36.CB) [> 4.3809 = 7.3015 < 9.4920] w=0.7377 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)L107.CB) [> 4.0959 = 6.8265 < 8.8745] w=0.7261 to align
# Constraint # added constraint: constraint((T0332)L74.CB, (T0332)I84.CB) [> 3.8239 = 6.3731 < 8.2850] w=0.7249 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L36.CB) [> 4.0055 = 6.6758 < 8.6786] w=0.7248 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)L109.CB) [> 4.2705 = 7.1176 < 9.2528] w=0.7144 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L109.CB) [> 4.0962 = 6.8270 < 8.8751] w=0.7144 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)L107.CB) [> 4.2360 = 7.0600 < 9.1779] w=0.7144 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)L36.CB) [> 4.1407 = 6.9011 < 8.9715] w=0.7136 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)L106.CB) [> 3.5149 = 5.8582 < 7.6156] w=0.7089 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)S105.CB) [> 4.2208 = 7.0347 < 9.1451] w=0.7089 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L107.CB) [> 3.9498 = 6.5830 < 8.5579] w=0.7088 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L24.CB) [> 3.6420 = 6.0700 < 7.8910] w=0.7030 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)C28.CB) [> 3.3012 = 5.5019 < 7.1525] w=0.6996 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)G32.CA) [> 4.0616 = 6.7693 < 8.8000] w=0.6991 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)S34.CB) [> 3.2602 = 5.4337 < 7.0638] w=0.6974 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)L108.CB) [> 3.9642 = 6.6070 < 8.5891] w=0.6964 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L109.CB) [> 4.3668 = 7.2780 < 9.4614] w=0.6964 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L109.CB) [> 4.0800 = 6.8000 < 8.8400] w=0.6915 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)Y82.CB) [> 3.9663 = 6.6104 < 8.5936] w=0.6807 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L124.CB) [> 3.2822 = 5.4703 < 7.1114] w=0.6740 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)G39.CA) [> 4.0357 = 6.7262 < 8.7441] w=0.6724 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)G110.CA) [> 4.1243 = 6.8739 < 8.9361] w=0.6623 to align
# Constraint # added constraint: constraint((T0332)Y82.CB, (T0332)K104.CB) [> 2.9771 = 4.9619 < 6.4504] w=0.6600 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)L108.CB) [> 2.7525 = 4.5875 < 5.9637] w=0.6574 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)L106.CB) [> 2.7132 = 4.5219 < 5.8785] w=0.6574 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G110.CA) [> 2.9483 = 4.9138 < 6.3879] w=0.6568 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)L36.CB) [> 3.7216 = 6.2027 < 8.0635] w=0.6479 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)V65.CB) [> 3.8552 = 6.4253 < 8.3529] w=0.6459 to align
# Constraint # added constraint: constraint((T0332)Y82.CB, (T0332)L106.CB) [> 3.0618 = 5.1030 < 6.6339] w=0.6443 to align
# Constraint # added constraint: constraint((T0332)Y82.CB, (T0332)S105.CB) [> 3.6976 = 6.1627 < 8.0115] w=0.6443 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)V141.CB) [> 3.4192 = 5.6987 < 7.4083] w=0.6386 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)V128.CB) [> 3.8160 = 6.3600 < 8.2679] w=0.6223 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)V128.CB) [> 3.5036 = 5.8393 < 7.5910] w=0.6223 to align
# Constraint # added constraint: constraint((T0332)L94.CB, (T0332)E129.CB) [> 4.2366 = 7.0610 < 9.1793] w=0.6222 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)E129.CB) [> 3.6347 = 6.0578 < 7.8751] w=0.6220 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)G145.CA) [> 4.3331 = 7.2218 < 9.3884] w=0.6209 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)S40.CB) [> 3.5811 = 5.9685 < 7.7590] w=0.6160 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)G110.CA) [> 4.0348 = 6.7247 < 8.7421] w=0.6106 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)N111.CB) [> 3.4997 = 5.8329 < 7.5828] w=0.6103 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)L107.CB) [> 4.0904 = 6.8173 < 8.8625] w=0.6103 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)C127.CB) [> 3.3590 = 5.5984 < 7.2779] w=0.6052 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)V37.CB) [> 3.9957 = 6.6596 < 8.6574] w=0.6046 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)E129.CB) [> 4.3064 = 7.1774 < 9.3307] w=0.6046 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)I130.CB) [> 4.1752 = 6.9587 < 9.0463] w=0.6045 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)S105.CB) [> 4.3087 = 7.1812 < 9.3355] w=0.5930 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)K104.CB) [> 2.6996 = 4.4994 < 5.8492] w=0.5880 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)C127.CB) [> 4.2443 = 7.0738 < 9.1959] w=0.5875 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)L124.CB) [> 3.4219 = 5.7032 < 7.4142] w=0.5874 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)V35.CB) [> 4.4172 = 7.3620 < 9.5706] w=0.5804 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)V38.CB) [> 4.3096 = 7.1826 < 9.3374] w=0.5782 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)S105.CB) [> 4.1249 = 6.8748 < 8.9372] w=0.5774 to align
# Constraint # added constraint: constraint((T0332)L94.CB, (T0332)V128.CB) [> 3.4695 = 5.7824 < 7.5172] w=0.5706 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)V126.CB) [> 3.9680 = 6.6133 < 8.5972] w=0.5700 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L62.CB) [> 3.4381 = 5.7302 < 7.4493] w=0.5647 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)V63.CB) [> 4.1563 = 6.9271 < 9.0053] w=0.5647 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)E64.CB) [> 3.8820 = 6.4700 < 8.4110] w=0.5598 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L106.CB) [> 4.5025 = 7.5041 < 9.7554] w=0.5538 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)I130.CB) [> 3.1966 = 5.3276 < 6.9259] w=0.5534 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)V126.CB) [> 2.9161 = 4.8601 < 6.3182] w=0.5532 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)E103.CB) [> 3.6969 = 6.1615 < 8.0099] w=0.5514 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)L36.CB) [> 4.1363 = 6.8938 < 8.9620] w=0.5480 to align
# Constraint # added constraint: constraint((T0332)Y99.CB, (T0332)V128.CB) [> 3.6426 = 6.0710 < 7.8923] w=0.5363 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)I149.CB) [> 4.2687 = 7.1144 < 9.2488] w=0.5360 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)C127.CB) [> 3.1581 = 5.2635 < 6.8426] w=0.5345 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)V63.CB) [> 3.6708 = 6.1180 < 7.9534] w=0.5335 to align
# Constraint # added constraint: constraint((T0332)G110.CA, (T0332)V141.CB) [> 3.9989 = 6.6647 < 8.6642] w=0.5316 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)V38.CB) [> 4.0172 = 6.6953 < 8.7039] w=0.5304 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)A146.CB) [> 3.1361 = 5.2269 < 6.7950] w=0.5195 to align
# Constraint # added constraint: constraint((T0332)D95.CB, (T0332)P131.CB) [> 3.3180 = 5.5299 < 7.1889] w=0.5191 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)N111.CB) [> 3.0101 = 5.0168 < 6.5218] w=0.5189 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)V126.CB) [> 4.1983 = 6.9971 < 9.0963] w=0.5187 to align
# Constraint # added constraint: constraint((T0332)I130.CB, (T0332)S144.CB) [> 3.6118 = 6.0196 < 7.8255] w=0.5179 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)I116.CB) [> 3.7215 = 6.2025 < 8.0632] w=0.5161 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)V65.CB) [> 3.5164 = 5.8607 < 7.6189] w=0.5145 to align
# Constraint # added constraint: constraint((T0332)I130.CB, (T0332)L148.CB) [> 4.2430 = 7.0717 < 9.1932] w=0.5016 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)G39.CA) [> 4.2475 = 7.0792 < 9.2030] w=0.5016 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)V128.CB) [> 3.6448 = 6.0747 < 7.8971] w=0.5015 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)L148.CB) [> 3.2738 = 5.4564 < 7.0933] w=0.5013 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)D125.CB) [> 3.1585 = 5.2642 < 6.8434] w=0.5012 to align
# Constraint # added constraint: constraint((T0332)A91.CB, (T0332)E129.CB) [> 4.0545 = 6.7576 < 8.7848] w=0.5010 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)K104.CB) [> 4.3627 = 7.2712 < 9.4525] w=0.5007 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L24.CB) [> 4.3666 = 7.2777 < 9.4610] w=0.4852 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)G145.CA) [> 3.5945 = 5.9909 < 7.7882] w=0.4851 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)N111.CB) [> 3.5064 = 5.8440 < 7.5972] w=0.4842 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)V126.CB) [> 4.2670 = 7.1118 < 9.2453] w=0.4835 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L70.CB) [> 3.7211 = 6.2018 < 8.0624] w=0.4835 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)S40.CB) [> 4.2118 = 7.0196 < 9.1255] w=0.4782 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)V65.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.4735 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)V63.CB) [> 3.4871 = 5.8118 < 7.5553] w=0.4735 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)K104.CB) [> 3.8160 = 6.3600 < 8.2680] w=0.4721 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)L70.CB) [> 3.8733 = 6.4554 < 8.3920] w=0.4719 to align
# Constraint # added constraint: constraint((T0332)F31.CB, (T0332)W150.CB) [> 3.7127 = 6.1878 < 8.0442] w=0.4675 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)V128.CB) [> 4.4286 = 7.3811 < 9.5954] w=0.4669 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L108.CB) [> 3.7962 = 6.3270 < 8.2251] w=0.4668 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)D125.CB) [> 3.9022 = 6.5037 < 8.4548] w=0.4668 to align
# Constraint # added constraint: constraint((T0332)S93.CB, (T0332)E129.CB) [> 3.3245 = 5.5409 < 7.2031] w=0.4661 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)Y152.CB) [> 3.8509 = 6.4181 < 8.3436] w=0.4645 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)V38.CB) [> 3.8950 = 6.4916 < 8.4391] w=0.4554 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)H142.CB) [> 4.0441 = 6.7402 < 8.7623] w=0.4505 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)S144.CB) [> 3.7115 = 6.1858 < 8.0416] w=0.4505 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)L148.CB) [> 3.5359 = 5.8932 < 7.6611] w=0.4505 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)H142.CB) [> 3.1257 = 5.2094 < 6.7723] w=0.4502 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)G115.CA) [> 4.2741 = 7.1235 < 9.2605] w=0.4496 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L124.CB) [> 3.7649 = 6.2748 < 8.1572] w=0.4495 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)H142.CB) [> 3.1502 = 5.2503 < 6.8254] w=0.4332 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)G110.CA) [> 3.6426 = 6.0710 < 7.8923] w=0.4331 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)E151.CB) [> 3.5573 = 5.9288 < 7.7075] w=0.4328 to align
# Constraint # added constraint: constraint((T0332)K92.CB, (T0332)C127.CB) [> 3.1646 = 5.2743 < 6.8566] w=0.4327 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L21.CB) [> 4.0638 = 6.7731 < 8.8050] w=0.4319 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)V35.CB) [> 4.3401 = 7.2335 < 9.4036] w=0.4316 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)V141.CB) [> 4.0566 = 6.7609 < 8.7892] w=0.4162 to align
# Constraint # added constraint: constraint((T0332)I71.CB, (T0332)Q123.CB) [> 3.4429 = 5.7381 < 7.4596] w=0.4144 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)L41.CB) [> 4.0310 = 6.7183 < 8.7338] w=0.4135 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)L62.CB) [> 3.9719 = 6.6199 < 8.6059] w=0.4125 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)L24.CB) [> 3.8459 = 6.4098 < 8.3328] w=0.4113 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)I84.CB) [> 4.1737 = 6.9562 < 9.0430] w=0.4047 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)Y99.CB) [> 3.7245 = 6.2074 < 8.0696] w=0.3990 to align
# Constraint # added constraint: constraint((T0332)F31.CB, (T0332)I149.CB) [> 2.7874 = 4.6457 < 6.0395] w=0.3988 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L148.CB) [> 4.0354 = 6.7257 < 8.7435] w=0.3986 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)S144.CB) [> 3.6713 = 6.1189 < 7.9545] w=0.3986 to align
# Constraint # added constraint: constraint((T0332)I130.CB, (T0332)L147.CB) [> 3.4784 = 5.7974 < 7.5366] w=0.3986 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)I121.CB) [> 4.3343 = 7.2238 < 9.3910] w=0.3984 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L108.CB) [> 4.6754 = 7.7923 < 10.1300] w=0.3983 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)I116.CB) [> 3.8228 = 6.3713 < 8.2827] w=0.3982 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)Q123.CB) [> 3.7716 = 6.2860 < 8.1718] w=0.3976 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)G145.CA) [> 4.2418 = 7.0696 < 9.1905] w=0.3971 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)K104.CB) [> 3.9334 = 6.5557 < 8.5225] w=0.3966 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)L62.CB) [> 4.0069 = 6.6783 < 8.6817] w=0.3948 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)P61.CB) [> 3.2863 = 5.4772 < 7.1203] w=0.3938 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)A56.CB) [> 3.1511 = 5.2519 < 6.8275] w=0.3919 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)L60.CB) [> 3.9078 = 6.5130 < 8.4669] w=0.3916 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)V63.CB) [> 4.1448 = 6.9080 < 8.9804] w=0.3905 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)V38.CB) [> 4.2863 = 7.1438 < 9.2870] w=0.3902 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)L62.CB) [> 3.9759 = 6.6265 < 8.6144] w=0.3900 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)L60.CB) [> 3.3352 = 5.5587 < 7.2263] w=0.3877 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L62.CB) [> 4.1517 = 6.9194 < 8.9953] w=0.3869 to align
# Constraint # added constraint: constraint((T0332)C28.CB, (T0332)I149.CB) [> 4.0661 = 6.7768 < 8.8099] w=0.3815 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)I149.CB) [> 3.4959 = 5.8264 < 7.5744] w=0.3815 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)G145.CA) [> 3.9673 = 6.6121 < 8.5957] w=0.3815 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)H142.CB) [> 2.9754 = 4.9590 < 6.4467] w=0.3815 to align
# Constraint # added constraint: constraint((T0332)F31.CB, (T0332)T153.CB) [> 3.0155 = 5.0258 < 6.5335] w=0.3812 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L106.CB) [> 4.5370 = 7.5616 < 9.8301] w=0.3812 to align
# Constraint # added constraint: constraint((T0332)S93.CB, (T0332)C127.CB) [> 3.3171 = 5.5285 < 7.1871] w=0.3812 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)L120.CB) [> 3.5535 = 5.9224 < 7.6991] w=0.3806 to align
# Constraint # added constraint: constraint((T0332)L74.CB, (T0332)L120.CB) [> 4.1096 = 6.8493 < 8.9041] w=0.3789 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L60.CB) [> 3.5479 = 5.9132 < 7.6872] w=0.3759 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)A56.CB) [> 3.1358 = 5.2264 < 6.7943] w=0.3740 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)Y73.CB) [> 3.5873 = 5.9789 < 7.7726] w=0.3682 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)I149.CB) [> 3.9012 = 6.5020 < 8.4527] w=0.3642 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)G145.CA) [> 3.7877 = 6.3129 < 8.2068] w=0.3642 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)V141.CB) [> 4.3446 = 7.2410 < 9.4134] w=0.3642 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)L148.CB) [> 4.4802 = 7.4669 < 9.7070] w=0.3641 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)I149.CB) [> 4.1314 = 6.8857 < 8.9514] w=0.3626 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)E103.CB) [> 4.4001 = 7.3334 < 9.5335] w=0.3626 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)P61.CB) [> 4.2201 = 7.0335 < 9.1436] w=0.3591 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)A56.CB) [> 3.3284 = 5.5473 < 7.2114] w=0.3559 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)L107.CB) [> 4.2662 = 7.1104 < 9.2435] w=0.3496 to align
# Constraint # added constraint: constraint((T0332)S105.CB, (T0332)Y152.CB) [> 4.2627 = 7.1045 < 9.2358] w=0.3469 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)H142.CB) [> 4.6236 = 7.7060 < 10.0179] w=0.3469 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)G145.CA) [> 4.1370 = 6.8949 < 8.9634] w=0.3462 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)I121.CB) [> 3.6822 = 6.1370 < 7.9781] w=0.3461 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)C127.CB) [> 4.4334 = 7.3891 < 9.6058] w=0.3460 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)Y82.CB) [> 4.1113 = 6.8522 < 8.9079] w=0.3456 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L106.CB) [> 3.8084 = 6.3473 < 8.2515] w=0.3434 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)W59.CB) [> 3.3993 = 5.6655 < 7.3652] w=0.3420 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)V141.CB) [> 3.2737 = 5.4561 < 7.0930] w=0.3296 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)V141.CB) [> 3.8396 = 6.3993 < 8.3191] w=0.3296 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)V54.CB) [> 3.6973 = 6.1622 < 8.0109] w=0.3295 to align
# Constraint # added constraint: constraint((T0332)F101.CB, (T0332)E151.CB) [> 4.0843 = 6.8072 < 8.8493] w=0.3294 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)L147.CB) [> 4.3825 = 7.3041 < 9.4953] w=0.3294 to align
# Constraint # added constraint: constraint((T0332)L94.CB, (T0332)C127.CB) [> 4.1753 = 6.9589 < 9.0466] w=0.3291 to align
# Constraint # added constraint: constraint((T0332)F31.CB, (T0332)A146.CB) [> 3.5534 = 5.9224 < 7.6991] w=0.3285 to align
# Constraint # added constraint: constraint((T0332)I130.CB, (T0332)L139.CB) [> 3.8089 = 6.3482 < 8.2527] w=0.3279 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)S105.CB) [> 3.7242 = 6.2070 < 8.0690] w=0.3277 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)G110.CA) [> 4.3253 = 7.2088 < 9.3714] w=0.3267 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)K104.CB) [> 3.9578 = 6.5964 < 8.5753] w=0.3261 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)P67.CB) [> 3.5842 = 5.9736 < 7.7657] w=0.3254 to align
# Constraint # added constraint: constraint((T0332)D16.CB, (T0332)Q42.CB) [> 3.5583 = 5.9306 < 7.7097] w=0.3251 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)S53.CB) [> 3.6002 = 6.0004 < 7.8005] w=0.3225 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)H142.CB) [> 3.1444 = 5.2407 < 6.8130] w=0.3203 to align
# Constraint # added constraint: constraint((T0332)S53.CB, (T0332)L62.CB) [> 3.6723 = 6.1205 < 7.9567] w=0.3200 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)L109.CB) [> 4.0522 = 6.7537 < 8.7798] w=0.3172 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L108.CB) [> 4.6256 = 7.7094 < 10.0222] w=0.3171 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)E103.CB) [> 3.5797 = 5.9662 < 7.7560] w=0.3170 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)G39.CA) [> 3.9550 = 6.5917 < 8.5692] w=0.3164 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L120.CB) [> 3.6331 = 6.0552 < 7.8717] w=0.3123 to align
# Constraint # added constraint: constraint((T0332)T97.CB, (T0332)E151.CB) [> 3.6453 = 6.0756 < 7.8982] w=0.3123 to align
# Constraint # added constraint: constraint((T0332)F101.CB, (T0332)Y152.CB) [> 2.3040 = 3.8400 < 4.9920] w=0.3123 to align
# Constraint # added constraint: constraint((T0332)F101.CB, (T0332)Q155.CB) [> 3.0971 = 5.1618 < 6.7103] w=0.3123 to align
# Constraint # added constraint: constraint((T0332)E112.CB, (T0332)V141.CB) [> 3.2537 = 5.4228 < 7.0497] w=0.3121 to align
# Constraint # added constraint: constraint((T0332)F31.CB, (T0332)Y152.CB) [> 4.1538 = 6.9230 < 8.9999] w=0.3121 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)G110.CA) [> 4.0928 = 6.8213 < 8.8677] w=0.3117 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)L60.CB) [> 3.7035 = 6.1725 < 8.0242] w=0.3102 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)S34.CB) [> 4.1582 = 6.9304 < 9.0095] w=0.2996 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)Y152.CB) [> 4.2990 = 7.1650 < 9.3145] w=0.2948 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)F49.CB) [> 3.6973 = 6.1621 < 8.0107] w=0.2945 to align
# Constraint # added constraint: constraint((T0332)Y99.CB, (T0332)V126.CB) [> 3.7889 = 6.3148 < 8.2092] w=0.2943 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L120.CB) [> 4.1745 = 6.9575 < 9.0448] w=0.2941 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)Q42.CB) [> 3.7623 = 6.2705 < 8.1517] w=0.2925 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)K66.CB) [> 3.9143 = 6.5238 < 8.4809] w=0.2906 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)I85.CB) [> 4.2238 = 7.0397 < 9.1516] w=0.2884 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)T83.CB) [> 4.0019 = 6.6699 < 8.6708] w=0.2884 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)Q58.CB) [> 3.1522 = 5.2537 < 6.8298] w=0.2839 to align
# Constraint # added constraint: constraint((T0332)Q132.CB, (T0332)S144.CB) [> 4.0426 = 6.7377 < 8.7590] w=0.2836 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L109.CB) [> 3.5042 = 5.8404 < 7.5925] w=0.2809 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)F31.CB) [> 4.4180 = 7.3633 < 9.5723] w=0.2774 to align
# Constraint # added constraint: constraint((T0332)G32.CA, (T0332)T153.CB) [> 4.3847 = 7.3078 < 9.5002] w=0.2773 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)E112.CB) [> 4.1608 = 6.9346 < 9.0150] w=0.2766 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)Y73.CB) [> 3.6158 = 6.0263 < 7.8342] w=0.2766 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)I85.CB) [> 3.0820 = 5.1366 < 6.6776] w=0.2716 to align
# Constraint # added constraint: constraint((T0332)P18.CB, (T0332)L52.CB) [> 3.9984 = 6.6641 < 8.6633] w=0.2697 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)S105.CB) [> 3.7282 = 6.2137 < 8.0778] w=0.2639 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L108.CB) [> 3.7527 = 6.2544 < 8.1307] w=0.2635 to align
# Constraint # added constraint: constraint((T0332)E112.CB, (T0332)N140.CB) [> 4.3107 = 7.1845 < 9.3398] w=0.2602 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)N140.CB) [> 4.3082 = 7.1803 < 9.3343] w=0.2602 to align
# Constraint # added constraint: constraint((T0332)P18.CB, (T0332)D46.CB) [> 3.2842 = 5.4736 < 7.1157] w=0.2602 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)V141.CB) [> 4.0560 = 6.7599 < 8.7879] w=0.2600 to align
# Constraint # added constraint: constraint((T0332)C28.CB, (T0332)L60.CB) [> 3.5128 = 5.8547 < 7.6111] w=0.2596 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)P61.CB) [> 4.2142 = 7.0237 < 9.1308] w=0.2593 to align
# Constraint # added constraint: constraint((T0332)V128.CB, (T0332)L148.CB) [> 4.2680 = 7.1133 < 9.2473] w=0.2593 to align
# Constraint # added constraint: constraint((T0332)E112.CB, (T0332)S138.CB) [> 3.7890 = 6.3151 < 8.2096] w=0.2591 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L41.CB) [> 3.0650 = 5.1083 < 6.6408] w=0.2587 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)S40.CB) [> 3.5918 = 5.9863 < 7.7822] w=0.2586 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)P67.CB) [> 3.6238 = 6.0397 < 7.8517] w=0.2562 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)V38.CB) [> 3.8625 = 6.4374 < 8.3687] w=0.2549 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)G86.CA) [> 3.7390 = 6.2316 < 8.1011] w=0.2549 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)V87.CB) [> 3.1247 = 5.2079 < 6.7703] w=0.2542 to align
# Constraint # added constraint: constraint((T0332)I130.CB, (T0332)G145.CA) [> 3.7915 = 6.3191 < 8.2148] w=0.2512 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)I85.CB) [> 3.7478 = 6.2464 < 8.1203] w=0.2485 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)E112.CB) [> 3.9927 = 6.6545 < 8.6508] w=0.2478 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L107.CB) [> 3.7694 = 6.2824 < 8.1671] w=0.2478 to align
# Constraint # added constraint: constraint((T0332)L74.CB, (T0332)L106.CB) [> 4.1665 = 6.9441 < 9.0274] w=0.2475 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)C43.CB) [> 4.0173 = 6.6955 < 8.7041] w=0.2429 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)I149.CB) [> 4.6322 = 7.7203 < 10.0364] w=0.2428 to align
# Constraint # added constraint: constraint((T0332)S4.CB, (T0332)S34.CB) [> 3.9784 = 6.6307 < 8.6199] w=0.2425 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)P131.CB) [> 4.3711 = 7.2851 < 9.4707] w=0.2422 to align
# Constraint # added constraint: constraint((T0332)P18.CB, (T0332)F49.CB) [> 2.9350 = 4.8917 < 6.3591] w=0.2422 to align
# Constraint # added constraint: constraint((T0332)L41.CB, (T0332)N111.CB) [> 3.2665 = 5.4441 < 7.0774] w=0.2419 to align
# Constraint # added constraint: constraint((T0332)L70.CB, (T0332)L108.CB) [> 4.5181 = 7.5301 < 9.7891] w=0.2413 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)H142.CB) [> 3.9389 = 6.5648 < 8.5343] w=0.2412 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)V65.CB) [> 4.1421 = 6.9035 < 8.9745] w=0.2402 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)I85.CB) [> 4.4346 = 7.3910 < 9.6083] w=0.2374 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)T83.CB) [> 4.2477 = 7.0795 < 9.2033] w=0.2374 to align
# Constraint # added constraint: constraint((T0332)T90.CB, (T0332)S138.CB) [> 3.8435 = 6.4058 < 8.3275] w=0.2358 to align
# Constraint # added constraint: constraint((T0332)Q132.CB, (T0332)V141.CB) [> 3.4061 = 5.6768 < 7.3799] w=0.2343 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)V128.CB) [> 4.4535 = 7.4225 < 9.6492] w=0.2326 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)L109.CB) [> 3.8977 = 6.4962 < 8.4451] w=0.2321 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)H142.CB) [> 4.5221 = 7.5368 < 9.7979] w=0.2253 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)K77.CB) [> 4.1995 = 6.9991 < 9.0989] w=0.2253 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)F49.CB) [> 3.5253 = 5.8755 < 7.6382] w=0.2252 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)S53.CB) [> 3.4365 = 5.7276 < 7.4459] w=0.2251 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)L41.CB) [> 3.6943 = 6.1572 < 8.0044] w=0.2246 to align
# Constraint # added constraint: constraint((T0332)L41.CB, (T0332)G110.CA) [> 4.1693 = 6.9489 < 9.0335] w=0.2246 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)L52.CB) [> 3.8527 = 6.4212 < 8.3476] w=0.2236 to align
# Constraint # added constraint: constraint((T0332)Y82.CB, (T0332)E103.CB) [> 3.1100 = 5.1834 < 6.7384] w=0.2236 to align
# Constraint # added constraint: constraint((T0332)L109.CB, (T0332)S138.CB) [> 3.4396 = 5.7327 < 7.4525] w=0.2226 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)T83.CB) [> 2.9043 = 4.8405 < 6.2926] w=0.2206 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)L70.CB) [> 3.9483 = 6.5805 < 8.5546] w=0.2194 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)V35.CB) [> 4.1201 = 6.8668 < 8.9268] w=0.2177 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)V37.CB) [> 4.3531 = 7.2552 < 9.4318] w=0.2173 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)Y73.CB) [> 2.8322 = 4.7203 < 6.1364] w=0.2165 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)Y73.CB) [> 3.0109 = 5.0181 < 6.5236] w=0.2165 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)L74.CB) [> 3.4876 = 5.8127 < 7.5565] w=0.2165 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)K77.CB) [> 3.7882 = 6.3136 < 8.2077] w=0.2165 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)K77.CB) [> 2.8812 = 4.8020 < 6.2426] w=0.2165 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)I85.CB) [> 3.8425 = 6.4042 < 8.3255] w=0.2137 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)G110.CA) [> 4.3284 = 7.2140 < 9.3781] w=0.2125 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)L52.CB) [> 3.3926 = 5.6543 < 7.3506] w=0.2082 to align
# Constraint # added constraint: constraint((T0332)P18.CB, (T0332)C43.CB) [> 3.3140 = 5.5234 < 7.1804] w=0.2080 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)A146.CB) [> 4.5236 = 7.5394 < 9.8012] w=0.2080 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)S53.CB) [> 2.7383 = 4.5639 < 5.9330] w=0.2079 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)C100.CB) [> 3.9796 = 6.6327 < 8.6225] w=0.2079 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)L109.CB) [> 4.2405 = 7.0675 < 9.1877] w=0.2076 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)A56.CB) [> 4.1124 = 6.8541 < 8.9103] w=0.2073 to align
# Constraint # added constraint: constraint((T0332)E80.CB, (T0332)L106.CB) [> 4.2432 = 7.0720 < 9.1936] w=0.2071 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)I130.CB) [> 3.7088 = 6.1813 < 8.0357] w=0.2070 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)V65.CB) [> 4.0528 = 6.7547 < 8.7812] w=0.2068 to align
# Constraint # added constraint: constraint((T0332)G110.CA, (T0332)P131.CB) [> 4.1866 = 6.9777 < 9.0710] w=0.2061 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)W59.CB) [> 3.5523 = 5.9205 < 7.6967] w=0.2059 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)Y82.CB) [> 3.1942 = 5.3237 < 6.9208] w=0.2038 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)I84.CB) [> 2.9846 = 4.9743 < 6.4666] w=0.2038 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)G86.CA) [> 2.9789 = 4.9648 < 6.4542] w=0.2038 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)G86.CA) [> 3.4317 = 5.7195 < 7.4353] w=0.2038 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)L62.CB) [> 4.1169 = 6.8615 < 8.9199] w=0.2038 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)L70.CB) [> 3.7437 = 6.2395 < 8.1113] w=0.1992 to align
# Constraint # added constraint: constraint((T0332)I9.CB, (T0332)T83.CB) [> 3.7517 = 6.2528 < 8.1286] w=0.1965 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)G86.CA) [> 3.6718 = 6.1196 < 7.9555] w=0.1965 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)G86.CA) [> 3.6362 = 6.0603 < 7.8784] w=0.1965 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)K104.CB) [> 3.7375 = 6.2292 < 8.0979] w=0.1951 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)Q50.CB) [> 3.8149 = 6.3582 < 8.2657] w=0.1908 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)S53.CB) [> 3.9399 = 6.5665 < 8.5365] w=0.1907 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)S34.CB) [> 3.6158 = 6.0264 < 7.8343] w=0.1905 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)A56.CB) [> 3.9265 = 6.5443 < 8.5075] w=0.1905 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)F49.CB) [> 3.9998 = 6.6663 < 8.6662] w=0.1903 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)V143.CB) [> 3.5898 = 5.9830 < 7.7779] w=0.1900 to align
# Constraint # added constraint: constraint((T0332)L41.CB, (T0332)E64.CB) [> 3.8109 = 6.3514 < 8.2569] w=0.1897 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)I130.CB) [> 4.0623 = 6.7705 < 8.8017] w=0.1896 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)E88.CB) [> 3.7624 = 6.2707 < 8.1519] w=0.1896 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)A146.CB) [> 4.2995 = 7.1658 < 9.3156] w=0.1892 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)H142.CB) [> 3.9388 = 6.5646 < 8.5340] w=0.1892 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)A146.CB) [> 3.9784 = 6.6306 < 8.6198] w=0.1883 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)L62.CB) [> 3.3883 = 5.6471 < 7.3412] w=0.1870 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)C28.CB) [> 4.4493 = 7.4155 < 9.6401] w=0.1849 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)E57.CB) [> 3.7289 = 6.2148 < 8.0792] w=0.1839 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L24.CB) [> 2.8032 = 4.6721 < 6.0737] w=0.1810 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)V87.CB) [> 3.9582 = 6.5970 < 8.5761] w=0.1804 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)C28.CB) [> 3.6015 = 6.0024 < 7.8032] w=0.1800 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)I85.CB) [> 3.5166 = 5.8609 < 7.6192] w=0.1795 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)V87.CB) [> 4.0805 = 6.8008 < 8.8410] w=0.1795 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)V37.CB) [> 3.8142 = 6.3570 < 8.2641] w=0.1795 to align
# Constraint # added constraint: constraint((T0332)D16.CB, (T0332)F49.CB) [> 3.6061 = 6.0102 < 7.8132] w=0.1791 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L106.CB) [> 3.7492 = 6.2486 < 8.1232] w=0.1789 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)G23.CA) [> 4.3995 = 7.3325 < 9.5323] w=0.1774 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)I84.CB) [> 3.5032 = 5.8387 < 7.5903] w=0.1753 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)G86.CA) [> 3.7106 = 6.1844 < 8.0397] w=0.1753 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)E57.CB) [> 4.1911 = 6.9851 < 9.0806] w=0.1735 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)L52.CB) [> 2.8959 = 4.8264 < 6.2744] w=0.1735 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)E57.CB) [> 3.3882 = 5.6470 < 7.3411] w=0.1735 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)V54.CB) [> 3.4023 = 5.6704 < 7.3716] w=0.1735 to align
# Constraint # added constraint: constraint((T0332)C28.CB, (T0332)L62.CB) [> 3.8846 = 6.4743 < 8.4166] w=0.1732 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)S53.CB) [> 4.1576 = 6.9293 < 9.0081] w=0.1731 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)Q48.CB) [> 3.3932 = 5.6553 < 7.3519] w=0.1729 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)P67.CB) [> 3.7849 = 6.3082 < 8.2006] w=0.1729 to align
# Constraint # added constraint: constraint((T0332)L41.CB, (T0332)R113.CB) [> 4.2177 = 7.0295 < 9.1383] w=0.1727 to align
# Constraint # added constraint: constraint((T0332)Y99.CB, (T0332)I130.CB) [> 4.0993 = 6.8322 < 8.8819] w=0.1723 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)Q42.CB) [> 3.9451 = 6.5753 < 8.5478] w=0.1718 to align
# Constraint # added constraint: constraint((T0332)C28.CB, (T0332)I84.CB) [> 3.9028 = 6.5046 < 8.4559] w=0.1711 to align
# Constraint # added constraint: constraint((T0332)C43.CB, (T0332)E64.CB) [> 3.9920 = 6.6534 < 8.6494] w=0.1708 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)V87.CB) [> 4.0870 = 6.8117 < 8.8552] w=0.1666 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)C25.CB) [> 3.2866 = 5.4777 < 7.1210] w=0.1661 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)L106.CB) [> 3.9867 = 6.6445 < 8.6378] w=0.1611 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)L106.CB) [> 4.4953 = 7.4922 < 9.7399] w=0.1609 to align
# Constraint # added constraint: constraint((T0332)I44.CB, (T0332)Q69.CB) [> 3.3852 = 5.6420 < 7.3346] w=0.1573 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)I84.CB) [> 4.5748 = 7.6247 < 9.9121] w=0.1570 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)G115.CA) [> 4.3147 = 7.1912 < 9.3486] w=0.1561 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)S45.CB) [> 4.0022 = 6.6704 < 8.6715] w=0.1561 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)F49.CB) [> 4.2307 = 7.0512 < 9.1665] w=0.1561 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G115.CA) [> 4.4794 = 7.4656 < 9.7053] w=0.1561 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)V63.CB) [> 4.2407 = 7.0678 < 9.1881] w=0.1557 to align
# Constraint # added constraint: constraint((T0332)G32.CA, (T0332)L60.CB) [> 4.5859 = 7.6432 < 9.9362] w=0.1555 to align
# Constraint # added constraint: constraint((T0332)C43.CB, (T0332)N111.CB) [> 3.1853 = 5.3089 < 6.9016] w=0.1554 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)I44.CB) [> 3.6303 = 6.0505 < 7.8656] w=0.1551 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)A146.CB) [> 3.7999 = 6.3332 < 8.2332] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)L139.CB) [> 3.6639 = 6.1065 < 7.9385] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)P131.CB) [> 4.3187 = 7.1978 < 9.3572] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)E112.CB, (T0332)R137.CB) [> 4.1898 = 6.9830 < 9.0779] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)Q132.CB, (T0332)L148.CB) [> 3.7476 = 6.2460 < 8.1198] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)T90.CB, (T0332)P131.CB) [> 4.1909 = 6.9848 < 9.0803] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)K104.CB) [> 4.2690 = 7.1150 < 9.2495] w=0.1550 to align
# Constraint # added constraint: constraint((T0332)L41.CB, (T0332)E88.CB) [> 4.3638 = 7.2731 < 9.4550] w=0.1545 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)H142.CB) [> 4.4043 = 7.3405 < 9.5427] w=0.1539 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)P67.CB) [> 3.9711 = 6.6185 < 8.6040] w=0.1536 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)S55.CB) [> 4.1199 = 6.8665 < 8.9264] w=0.1535 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)I85.CB) [> 3.6347 = 6.0578 < 7.8752] w=0.1529 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)I84.CB) [> 4.5235 = 7.5392 < 9.8010] w=0.1523 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L124.CB) [> 4.2774 = 7.1290 < 9.2677] w=0.1518 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)I84.CB) [> 4.1811 = 6.9684 < 9.0590] w=0.1469 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)G81.CA) [> 4.3351 = 7.2251 < 9.3926] w=0.1469 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)V128.CB) [> 3.6073 = 6.0122 < 7.8159] w=0.1467 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)V87.CB) [> 3.4179 = 5.6965 < 7.4054] w=0.1464 to align
# Constraint # added constraint: constraint((T0332)Q132.CB, (T0332)L147.CB) [> 2.9662 = 4.9437 < 6.4268] w=0.1458 to align
# Constraint # added constraint: constraint((T0332)V63.CB, (T0332)K77.CB) [> 3.7477 = 6.2462 < 8.1201] w=0.1457 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)C25.CB) [> 3.5648 = 5.9414 < 7.7238] w=0.1455 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)I84.CB) [> 3.4128 = 5.6879 < 7.3943] w=0.1455 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)E88.CB) [> 3.6524 = 6.0873 < 7.9135] w=0.1426 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)Q132.CB) [> 3.9477 = 6.5795 < 8.5534] w=0.1424 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)C100.CB) [> 4.1393 = 6.8988 < 8.9685] w=0.1417 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)P61.CB) [> 3.9304 = 6.5506 < 8.5157] w=0.1388 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)S55.CB) [> 4.4771 = 7.4618 < 9.7004] w=0.1388 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)D46.CB) [> 4.3579 = 7.2632 < 9.4421] w=0.1388 to align
# Constraint # added constraint: constraint((T0332)G115.CA, (T0332)S138.CB) [> 4.5810 = 7.6350 < 9.9255] w=0.1387 to align
# Constraint # added constraint: constraint((T0332)L24.CB, (T0332)A146.CB) [> 4.5744 = 7.6240 < 9.9113] w=0.1387 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)H142.CB) [> 4.7423 = 7.9038 < 10.2750] w=0.1387 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)S53.CB) [> 4.3951 = 7.3251 < 9.5226] w=0.1385 to align
# Constraint # added constraint: constraint((T0332)C43.CB, (T0332)R113.CB) [> 2.8992 = 4.8320 < 6.2816] w=0.1381 to align
# Constraint # added constraint: constraint((T0332)Q42.CB, (T0332)N111.CB) [> 4.1796 = 6.9660 < 9.0558] w=0.1381 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)V128.CB) [> 3.8446 = 6.4076 < 8.3299] w=0.1380 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)E112.CB) [> 3.9795 = 6.6325 < 8.6223] w=0.1373 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)G134.CA) [> 3.6182 = 6.0303 < 7.8394] w=0.1373 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)Q132.CB) [> 4.4877 = 7.4794 < 9.7233] w=0.1373 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)L52.CB) [> 4.5926 = 7.6543 < 9.9507] w=0.1347 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)V35.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.1327 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)H142.CB) [> 4.0328 = 6.7214 < 8.7378] w=0.1313 to align
# Constraint # added constraint: constraint((T0332)Q133.CB, (T0332)L147.CB) [> 4.1612 = 6.9354 < 9.0160] w=0.1285 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)E112.CB) [> 3.7459 = 6.2431 < 8.1160] w=0.1264 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)L139.CB) [> 4.2520 = 7.0868 < 9.2128] w=0.1251 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)E88.CB) [> 3.6867 = 6.1444 < 7.9877] w=0.1245 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)V54.CB) [> 3.4973 = 5.8288 < 7.5774] w=0.1214 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)A56.CB) [> 4.5405 = 7.5675 < 9.8378] w=0.1213 to align
# Constraint # added constraint: constraint((T0332)I135.CB, (T0332)S144.CB) [> 3.5482 = 5.9137 < 7.6878] w=0.1203 to align
# Constraint # added constraint: constraint((T0332)S6.CB, (T0332)V35.CB) [> 4.7335 = 7.8892 < 10.2559] w=0.1197 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L36.CB) [> 3.4970 = 5.8284 < 7.5769] w=0.1197 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)V87.CB) [> 3.2417 = 5.4028 < 7.0236] w=0.1194 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)T83.CB) [> 2.2809 = 3.8016 < 4.9420] w=0.1183 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)I84.CB) [> 3.9992 = 6.6653 < 8.6649] w=0.1183 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L106.CB) [> 4.0518 = 6.7531 < 8.7790] w=0.1167 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)V141.CB) [> 3.3462 = 5.5769 < 7.2500] w=0.1142 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)F49.CB) [> 3.8708 = 6.4513 < 8.3867] w=0.1142 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)V87.CB) [> 3.5926 = 5.9876 < 7.7839] w=0.1125 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)G86.CA) [> 3.9318 = 6.5531 < 8.5190] w=0.1125 to align
# Constraint # added constraint: constraint((T0332)S45.CB, (T0332)I71.CB) [> 4.0238 = 6.7064 < 8.7183] w=0.1123 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)E129.CB) [> 3.8113 = 6.3522 < 8.2579] w=0.1122 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)H142.CB) [> 4.5317 = 7.5527 < 9.8186] w=0.1101 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)N111.CB) [> 3.5423 = 5.9038 < 7.6749] w=0.1090 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)N111.CB) [> 3.7643 = 6.2739 < 8.1561] w=0.1090 to align
# Constraint # added constraint: constraint((T0332)H51.CB, (T0332)I71.CB) [> 3.4456 = 5.7426 < 7.4654] w=0.1056 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)V54.CB) [> 3.6011 = 6.0018 < 7.8023] w=0.1041 to align
# Constraint # added constraint: constraint((T0332)I5.CB, (T0332)K104.CB) [> 3.8032 = 6.3387 < 8.2403] w=0.1041 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)R137.CB) [> 3.8869 = 6.4782 < 8.4217] w=0.1041 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)S138.CB) [> 3.3410 = 5.5684 < 7.2389] w=0.1041 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)V54.CB) [> 4.2940 = 7.1567 < 9.3037] w=0.1041 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)L148.CB) [> 4.1784 = 6.9640 < 9.0531] w=0.1040 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)N111.CB) [> 2.8240 = 4.7067 < 6.1188] w=0.1038 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)G145.CA) [> 4.1050 = 6.8416 < 8.8941] w=0.1036 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)T153.CB) [> 4.5213 = 7.5354 < 9.7961] w=0.1034 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)V143.CB) [> 4.1729 = 6.9548 < 9.0412] w=0.1033 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)Q50.CB) [> 4.2093 = 7.0155 < 9.1201] w=0.1033 to align
# Constraint # added constraint: constraint((T0332)T97.CB, (T0332)L148.CB) [> 4.3721 = 7.2868 < 9.4729] w=0.1031 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)Y152.CB) [> 3.3915 = 5.6526 < 7.3483] w=0.1027 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G86.CA) [> 3.7564 = 6.2606 < 8.1388] w=0.1026 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)G86.CA) [> 3.9267 = 6.5445 < 8.5078] w=0.1026 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)V87.CB) [> 3.7403 = 6.2337 < 8.1039] w=0.1026 to align
# Constraint # added constraint: constraint((T0332)R7.CB, (T0332)A33.CB) [> 3.6758 = 6.1263 < 7.9641] w=0.1018 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)V87.CB) [> 4.2275 = 7.0458 < 9.1595] w=0.1017 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)E88.CB) [> 4.2306 = 7.0511 < 9.1664] w=0.1012 to align
# Constraint # added constraint: constraint((T0332)Q89.CB, (T0332)L109.CB) [> 2.6048 = 4.3413 < 5.6437] w=0.1006 to align
# Constraint # added constraint: constraint((T0332)L124.CB, (T0332)L139.CB) [> 3.1968 = 5.3281 < 6.9265] w=0.1001 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)T27.CB) [> 3.6318 = 6.0530 < 7.8689] w=0.0995 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)E88.CB) [> 3.0188 = 5.0314 < 6.5408] w=0.0986 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)V63.CB) [> 3.7730 = 6.2883 < 8.1748] w=0.0970 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)P61.CB) [> 3.6869 = 6.1448 < 7.9882] w=0.0970 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)W150.CB) [> 4.6408 = 7.7346 < 10.0550] w=0.0968 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)V143.CB) [> 3.3641 = 5.6068 < 7.2889] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)N140.CB) [> 2.8967 = 4.8279 < 6.2763] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)S144.CB) [> 3.2317 = 5.3861 < 7.0020] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)L147.CB) [> 3.1254 = 5.2090 < 6.7716] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)E151.CB) [> 3.9455 = 6.5758 < 8.5485] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)I84.CB) [> 4.1703 = 6.9506 < 9.0357] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)H142.CB) [> 3.4159 = 5.6932 < 7.4012] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)L139.CB) [> 3.7641 = 6.2735 < 8.1556] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)L139.CB) [> 3.1534 = 5.2557 < 6.8323] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)N140.CB) [> 2.7797 = 4.6329 < 6.0227] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L147.CB) [> 3.0919 = 5.1532 < 6.6991] w=0.0953 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)K104.CB) [> 3.3333 = 5.5555 < 7.2221] w=0.0944 to align
# Constraint # added constraint: constraint((T0332)L96.CB, (T0332)N140.CB) [> 3.0414 = 5.0690 < 6.5897] w=0.0939 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)V37.CB) [> 4.1433 = 6.9054 < 8.9771] w=0.0939 to align
# Constraint # added constraint: constraint((T0332)G110.CA, (T0332)W150.CB) [> 4.4715 = 7.4526 < 9.6883] w=0.0939 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)V143.CB) [> 4.2546 = 7.0911 < 9.2184] w=0.0939 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)E88.CB) [> 3.1638 = 5.2730 < 6.8549] w=0.0909 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)S55.CB) [> 3.8670 = 6.4450 < 8.3786] w=0.0867 to align
# Constraint # added constraint: constraint((T0332)C25.CB, (T0332)Q50.CB) [> 4.0075 = 6.6791 < 8.6828] w=0.0867 to align
# Constraint # added constraint: constraint((T0332)T27.CB, (T0332)L139.CB) [> 4.5835 = 7.6391 < 9.9309] w=0.0866 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)W150.CB) [> 4.5497 = 7.5828 < 9.8576] w=0.0860 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)I85.CB) [> 4.7050 = 7.8416 < 10.1941] w=0.0860 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)W59.CB) [> 4.1761 = 6.9602 < 9.0483] w=0.0850 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)V126.CB) [> 4.2915 = 7.1525 < 9.2983] w=0.0809 to align
# Constraint # added constraint: constraint((T0332)K17.CB, (T0332)L52.CB) [> 3.7467 = 6.2445 < 8.1178] w=0.0798 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)R154.CB) [> 2.8291 = 4.7151 < 6.1296] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)W150.CB) [> 2.8441 = 4.7401 < 6.1622] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)R154.CB) [> 4.0437 = 6.7394 < 8.7613] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L147.CB) [> 4.7410 = 7.9016 < 10.2721] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)V143.CB) [> 3.4676 = 5.7792 < 7.5130] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L147.CB) [> 2.4360 = 4.0600 < 5.2780] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)V143.CB) [> 4.3734 = 7.2891 < 9.4758] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)V143.CB) [> 3.4127 = 5.6879 < 7.3942] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)W150.CB) [> 3.0898 = 5.1496 < 6.6945] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)G110.CA, (T0332)H142.CB) [> 2.6609 = 4.4349 < 5.7654] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)H142.CB) [> 4.6062 = 7.6769 < 9.9800] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)V143.CB) [> 2.6730 = 4.4551 < 5.7916] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)V143.CB) [> 2.7924 = 4.6541 < 6.0503] w=0.0797 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)S105.CB) [> 4.3960 = 7.3267 < 9.5247] w=0.0791 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)V143.CB) [> 2.7231 = 4.5384 < 5.9000] w=0.0791 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)S105.CB) [> 4.4487 = 7.4145 < 9.6388] w=0.0782 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)K104.CB) [> 4.5358 = 7.5597 < 9.8277] w=0.0782 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)G86.CA) [> 3.9799 = 6.6332 < 8.6232] w=0.0782 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)C100.CB) [> 3.8875 = 6.4792 < 8.4229] w=0.0781 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)T83.CB) [> 4.4484 = 7.4140 < 9.6382] w=0.0737 to align
# Constraint # added constraint: constraint((T0332)Q133.CB, (T0332)L148.CB) [> 3.5617 = 5.9362 < 7.7171] w=0.0726 to align
# Constraint # added constraint: constraint((T0332)I5.CB, (T0332)G32.CA) [> 3.2316 = 5.3860 < 7.0017] w=0.0694 to align
# Constraint # added constraint: constraint((T0332)I5.CB, (T0332)A33.CB) [> 3.9824 = 6.6374 < 8.6286] w=0.0694 to align
# Constraint # added constraint: constraint((T0332)K17.CB, (T0332)Q48.CB) [> 4.7341 = 7.8902 < 10.2572] w=0.0694 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)H142.CB) [> 4.6309 = 7.7183 < 10.0337] w=0.0694 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)T153.CB) [> 4.2088 = 7.0147 < 9.1191] w=0.0694 to align
# Constraint # added constraint: constraint((T0332)E29.CB, (T0332)V54.CB) [> 3.9939 = 6.6565 < 8.6535] w=0.0692 to align
# Constraint # added constraint: constraint((T0332)P102.CB, (T0332)Y152.CB) [> 4.7544 = 7.9240 < 10.3012] w=0.0692 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L106.CB) [> 4.6101 = 7.6835 < 9.9886] w=0.0691 to align
# Constraint # added constraint: constraint((T0332)N20.CB, (T0332)V38.CB) [> 4.2122 = 7.0204 < 9.1265] w=0.0690 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)H142.CB) [> 3.8772 = 6.4619 < 8.4005] w=0.0690 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)G145.CA) [> 3.5172 = 5.8620 < 7.6206] w=0.0689 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)V63.CB) [> 4.2254 = 7.0423 < 9.1550] w=0.0688 to align
# Constraint # added constraint: constraint((T0332)A56.CB, (T0332)I149.CB) [> 4.0075 = 6.6792 < 8.6830] w=0.0688 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)G110.CA) [> 3.9276 = 6.5459 < 8.5097] w=0.0688 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)N111.CB) [> 3.6200 = 6.0334 < 7.8434] w=0.0688 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L107.CB) [> 3.7545 = 6.2575 < 8.1347] w=0.0687 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)V126.CB) [> 3.6996 = 6.1660 < 8.0158] w=0.0687 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L107.CB) [> 3.2927 = 5.4879 < 7.1342] w=0.0686 to align
# Constraint # added constraint: constraint((T0332)A56.CB, (T0332)A146.CB) [> 3.0601 = 5.1001 < 6.6302] w=0.0686 to align
# Constraint # added constraint: constraint((T0332)T19.CB, (T0332)L139.CB) [> 3.9476 = 6.5794 < 8.5532] w=0.0685 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)W59.CB) [> 3.9060 = 6.5100 < 8.4629] w=0.0685 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)R137.CB) [> 3.3739 = 5.6232 < 7.3102] w=0.0685 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)V126.CB) [> 4.0087 = 6.6812 < 8.6856] w=0.0675 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)T83.CB) [> 3.8871 = 6.4786 < 8.4221] w=0.0673 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)E88.CB) [> 3.6221 = 6.0368 < 7.8479] w=0.0654 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G23.CA) [> 4.0373 = 6.7289 < 8.7476] w=0.0638 to align
# Constraint # added constraint: constraint((T0332)L108.CB, (T0332)G145.CA) [> 4.7329 = 7.8881 < 10.2545] w=0.0635 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)G110.CA) [> 3.0895 = 5.1491 < 6.6939] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)N111.CB) [> 4.4650 = 7.4416 < 9.6741] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)I121.CB) [> 4.2608 = 7.1014 < 9.2318] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)G110.CA) [> 4.1945 = 6.9909 < 9.0882] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)L108.CB) [> 4.4018 = 7.3363 < 9.5372] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)N111.CB) [> 4.3935 = 7.3226 < 9.5193] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)N111.CB) [> 4.5927 = 7.6545 < 9.9509] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)L109.CB) [> 4.4556 = 7.4261 < 9.6539] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)I84.CB, (T0332)L109.CB) [> 4.0047 = 6.6744 < 8.6768] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)L107.CB) [> 4.3539 = 7.2565 < 9.4335] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)I85.CB) [> 4.0942 = 6.8237 < 8.8708] w=0.0570 to align
# Constraint # added constraint: constraint((T0332)L21.CB, (T0332)V54.CB) [> 4.4104 = 7.3507 < 9.5559] w=0.0520 to align
# Constraint # added constraint: constraint((T0332)A33.CB, (T0332)T153.CB) [> 4.5394 = 7.5656 < 9.8353] w=0.0520 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)V35.CB) [> 4.3597 = 7.2661 < 9.4460] w=0.0520 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)S144.CB) [> 4.4005 = 7.3341 < 9.5344] w=0.0520 to align
# Constraint # added constraint: constraint((T0332)I136.CB, (T0332)L147.CB) [> 4.3613 = 7.2688 < 9.4495] w=0.0519 to align
# Constraint # added constraint: constraint((T0332)G110.CA, (T0332)S144.CB) [> 4.7022 = 7.8370 < 10.1881] w=0.0519 to align
# Constraint # added constraint: constraint((T0332)G23.CA, (T0332)A146.CB) [> 4.2344 = 7.0574 < 9.1746] w=0.0519 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)P61.CB) [> 4.1908 = 6.9847 < 9.0801] w=0.0517 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)G145.CA) [> 4.7973 = 7.9955 < 10.3941] w=0.0516 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)G145.CA) [> 4.1124 = 6.8539 < 8.9101] w=0.0516 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)I85.CB) [> 4.0825 = 6.8041 < 8.8453] w=0.0516 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)E29.CB) [> 4.7470 = 7.9117 < 10.2852] w=0.0516 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)C25.CB) [> 4.3418 = 7.2363 < 9.4073] w=0.0516 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)S105.CB) [> 4.2457 = 7.0761 < 9.1990] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)K104.CB) [> 4.6157 = 7.6927 < 10.0006] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)S105.CB) [> 3.0573 = 5.0955 < 6.6242] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)K104.CB) [> 4.4423 = 7.4038 < 9.6250] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)S105.CB) [> 4.1778 = 6.9630 < 9.0519] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)L106.CB) [> 4.5103 = 7.5172 < 9.7723] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L106.CB) [> 4.1980 = 6.9966 < 9.0956] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)L107.CB) [> 4.0372 = 6.7286 < 8.7472] w=0.0515 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)V143.CB) [> 3.0706 = 5.1177 < 6.6530] w=0.0514 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)G86.CA) [> 3.3304 = 5.5506 < 7.2158] w=0.0510 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)G86.CA) [> 4.0497 = 6.7494 < 8.7743] w=0.0510 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)I84.CB) [> 3.5335 = 5.8892 < 7.6560] w=0.0510 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)I85.CB) [> 3.6883 = 6.1471 < 7.9913] w=0.0510 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)C25.CB) [> 3.2121 = 5.3535 < 6.9595] w=0.0503 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)V38.CB) [> 3.3011 = 5.5018 < 7.1523] w=0.0503 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)L36.CB) [> 4.0614 = 6.7689 < 8.7996] w=0.0503 to align
# Constraint # added constraint: constraint((T0332)A12.CB, (T0332)E88.CB) [> 3.9997 = 6.6662 < 8.6660] w=0.0496 to align
# Constraint # added constraint: constraint((T0332)G86.CA, (T0332)L147.CB) [> 4.7548 = 7.9247 < 10.3021] w=0.0485 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)R154.CB) [> 4.3227 = 7.2045 < 9.3659] w=0.0485 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)V143.CB) [> 4.7297 = 7.8828 < 10.2477] w=0.0485 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)E88.CB) [> 3.1243 = 5.2072 < 6.7694] w=0.0470 to align
# Constraint # added constraint: constraint((T0332)Q42.CB, (T0332)T97.CB) [> 3.7741 = 6.2902 < 8.1772] w=0.0468 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)L109.CB) [> 4.7484 = 7.9141 < 10.2883] w=0.0468 to align
# Constraint # added constraint: constraint((T0332)I135.CB, (T0332)L148.CB) [> 2.7401 = 4.5668 < 5.9368] w=0.0380 to align
# Constraint # added constraint: constraint((T0332)I136.CB, (T0332)L148.CB) [> 4.5304 = 7.5506 < 9.8158] w=0.0380 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)C25.CB) [> 4.0359 = 6.7265 < 8.7445] w=0.0347 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)G145.CA) [> 4.1519 = 6.9198 < 8.9957] w=0.0346 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)S144.CB) [> 3.9495 = 6.5825 < 8.5572] w=0.0346 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)L108.CB) [> 4.6503 = 7.7505 < 10.0756] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)G145.CA) [> 4.4392 = 7.3987 < 9.6182] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)L109.CB) [> 3.2506 = 5.4177 < 7.0430] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)N111.CB) [> 3.2754 = 5.4591 < 7.0968] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)V38.CB) [> 3.4471 = 5.7453 < 7.4688] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)S105.CB) [> 3.9620 = 6.6033 < 8.5842] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)S34.CB) [> 4.5332 = 7.5554 < 9.8220] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)S55.CB) [> 4.3737 = 7.2895 < 9.4764] w=0.0344 to align
# Constraint # added constraint: constraint((T0332)G22.CA, (T0332)S34.CB) [> 4.7432 = 7.9054 < 10.2770] w=0.0343 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)E88.CB) [> 3.8251 = 6.3752 < 8.2877] w=0.0340 to align
# Constraint # added constraint: constraint((T0332)E88.CB, (T0332)I136.CB) [> 3.7626 = 6.2709 < 8.1522] w=0.0329 to align
# Constraint # added constraint: constraint((T0332)N111.CB, (T0332)I136.CB) [> 4.3781 = 7.2969 < 9.4859] w=0.0328 to align
# Constraint # added constraint: constraint((T0332)I15.CB, (T0332)V54.CB) [> 3.8410 = 6.4016 < 8.3221] w=0.0313 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)S144.CB) [> 4.5624 = 7.6039 < 9.8851] w=0.0312 to align
# Constraint # added constraint: constraint((T0332)S40.CB, (T0332)N140.CB) [> 4.3994 = 7.3322 < 9.5319] w=0.0312 to align
# Constraint # added constraint: constraint((T0332)L1.CB, (T0332)V63.CB) [> 3.7410 = 6.2350 < 8.1055] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)L1.CB, (T0332)P61.CB) [> 3.0091 = 5.0152 < 6.5197] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)L1.CB, (T0332)V37.CB) [> 4.5187 = 7.5311 < 9.7905] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)Q48.CB) [> 4.4285 = 7.3809 < 9.5952] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)V30.CB, (T0332)V54.CB) [> 3.9837 = 6.6394 < 8.6313] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)V37.CB) [> 3.3059 = 5.5099 < 7.1629] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)V87.CB, (T0332)L147.CB) [> 4.7933 = 7.9889 < 10.3856] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)L52.CB, (T0332)E114.CB) [> 4.6637 = 7.7728 < 10.1046] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)N111.CB) [> 2.1695 = 3.6158 < 4.7005] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)R26.CB, (T0332)H51.CB) [> 4.5837 = 7.6396 < 9.9314] w=0.0173 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)L109.CB) [> 3.8217 = 6.3695 < 8.2804] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)G110.CA) [> 3.2267 = 5.3778 < 6.9911] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)H142.CB) [> 3.5622 = 5.9370 < 7.7181] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L109.CB) [> 4.1965 = 6.9941 < 9.0923] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)L108.CB) [> 3.0557 = 5.0929 < 6.6207] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)H142.CB) [> 3.9026 = 6.5044 < 8.4557] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L109.CB) [> 3.8076 = 6.3460 < 8.2498] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)L107.CB) [> 3.0473 = 5.0788 < 6.6024] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)L107.CB) [> 4.2237 = 7.0395 < 9.1514] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)L106.CB) [> 3.0155 = 5.0258 < 6.5335] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)K104.CB) [> 3.6949 = 6.1582 < 8.0057] w=0.0171 to align
# Constraint # added constraint: constraint((T0332)I116.CB, (T0332)S144.CB) [> 2.8283 = 4.7139 < 6.1280] w=0.0169 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)G39.CA) [> 3.3297 = 5.5494 < 7.2143] w=0.0168 to align
# Constraint # added constraint: constraint((T0332)L8.CB, (T0332)V37.CB) [> 3.8073 = 6.3455 < 8.2492] w=0.0168 to align
# Constraint # added constraint: constraint((T0332)V38.CB, (T0332)K104.CB) [> 4.2880 = 7.1466 < 9.2906] w=0.0162 to align
# Constraint # added constraint: constraint((T0332)L107.CB, (T0332)V143.CB) [> 2.7642 = 4.6069 < 5.9890] w=0.0162 to align
# Constraint # added constraint: constraint((T0332)L14.CB, (T0332)G86.CA) [> 4.6879 = 7.8131 < 10.1571] w=0.0157 to align
# Constraint # added constraint: constraint((T0332)V37.CB, (T0332)N140.CB) [> 3.5103 = 5.8505 < 7.6056] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)G39.CA, (T0332)I136.CB) [> 4.4225 = 7.3708 < 9.5821] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)T83.CB, (T0332)L147.CB) [> 3.4075 = 5.6791 < 7.3828] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)I85.CB, (T0332)S144.CB) [> 2.9340 = 4.8900 < 6.3570] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)L36.CB, (T0332)S144.CB) [> 4.6825 = 7.8042 < 10.1455] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)G145.CA) [> 4.2599 = 7.0998 < 9.2297] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)V35.CB, (T0332)S144.CB) [> 3.1015 = 5.1692 < 6.7200] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)S34.CB, (T0332)L147.CB) [> 4.6040 = 7.6733 < 9.9753] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)L106.CB, (T0332)V143.CB) [> 4.1985 = 6.9974 < 9.0967] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)V10.CB, (T0332)E88.CB) [> 3.9223 = 6.5372 < 8.4984] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)V11.CB, (T0332)E88.CB) [> 3.9982 = 6.6636 < 8.6627] w=0.0156 to align
# Constraint # added constraint: constraint((T0332)S13.CB, (T0332)E114.CB) [> 4.7468 = 7.9114 < 10.2848] w=0.0035 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0332/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0332/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 53
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 88
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 142
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 156
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 127
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 151
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 123
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 109
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 149
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 155
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 141
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# Found a chain break before 40
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# Found a chain break before 41
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 43
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 39
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 51
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 43
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 39
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 149
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# Found a chain break before 127
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 64
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 61
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 74
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 93
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 64
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 88
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 30
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 69
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 86
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 69
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 40
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 68
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 63
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 86
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
Skipped atom 494, because occupancy 1 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 54
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 103
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 91
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 103
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 156
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 39
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 91
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 93
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 103
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 155
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 54
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 43
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# Found a chain break before 39
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 110
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0332 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# Found a chain break before 158
# copying to AlignedFragments data structure
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 245
model score -0.1803
model score -0.1102
model score -0.2120
model score -0.1989
model score -0.1410
model score -0.1777
model score -0.2452
model score -0.2182
model score -0.2153
model score -0.2350
model score -0.1852
model score 0.0120
model score 0.0293
model score -0.1042
model score -0.2272
model score -0.2600
model score -0.3049
model score 0.1869
model score -0.2351
model score -0.2269
model score 1.8282
model score 1.4685
model score 1.6822
model score 1.6842
model score 1.5633
model score -0.2397
model score -0.0184
model score -0.0230
model score -0.0232
model score -0.0222
model score -0.0175
model score -0.2457
model score -0.2110
model score -0.2413
model score -0.2265
model score -0.2358
model score -0.2136
model score -0.2298
model score -0.2254
model score 0.1883
model score -0.2308
model score -0.2548
model score 1.2745
model score 1.2757
model score 1.2769
model score 1.2749
model score 1.2758
model score -0.2234
model score 0.0522
model score -0.2011
model score -0.2054
model score -0.0997
model score -0.2300
model score -0.2234
model score -0.2358
model score -0.2457
model score -0.2413
model score -0.2548
model score -0.3189
model score 0.0453
model score -0.2615
model score -0.2269
model score 1.2753
model score 1.2755
model score 1.2753
model score 1.2755
model score 1.2753
model score 1.2755
model score 1.2753
model score 1.2755
model score 1.2753
model score 1.2753
model score 2.2607
model score 2.3391
model score 2.2805
model score 1.9210
model score 2.5171
model score -0.2589
model score -0.2413
model score -0.2245
model score 0.7212
model score 1.2756
model score 1.2755
model score 1.2755
model score 1.2755
model score 1.2769
model score 1.2747
model score -0.1984
model score -0.1327
model score -0.2513
model score -0.2378
model score -0.2083
model score -0.2244
model score -0.2397
model score -0.2397
model score -0.2370
model score -0.1418
model score -0.1976
model score -0.0406
model score 0.0248
model score -0.0554
model score -0.1100
model score -0.2011
model score -0.1864
model score 0.0046
model score -0.2407
model score -0.2299
model score -0.2414
model score -0.0880
model score -0.0039
model score -0.2420
model score -0.2229
model score -0.2414
model score -0.0880
model score -0.0039
model score -0.2730
model score 1.2166
model score -0.2424
model score -0.2399
model score -0.2478
model score -0.2415
model score -0.2485
model score -0.2509
model score -0.2399
model score -0.2099
model score -0.1761
model score -0.2073
model score -0.2305
model score -0.2140
model score -0.2172
model score -0.2172
model score -0.2206
model score -0.2078
model score -0.2314
model score -0.2285
model score -0.2273
model score -0.2273
model score -0.2273
model score -0.2273
model score -0.2277
model score -0.1924
model score -0.2172
model score -0.2172
model score -0.2172
model score -0.2158
model score -0.2203
model score -0.2294
model score -0.2428
model score -0.2158
model score -0.2143
model score -0.2161
model score -0.1994
model score -0.1362
model score 0.2450
model score -0.2231
model score -0.2404
model score -0.2185
model score -0.2262
model score 0.1761
model score -0.1483
model score -0.2081
model score -0.2367
model score -0.2409
model score -0.2277
model score -0.1373
model score -0.1538
model score 0.0927
model score -0.1812
model score -0.1611
model score 1.2756
model score 1.2753
model score 1.2755
model score 1.2749
model score 1.2753
model score 1.2752
model score 1.2750
model score 1.2753
model score 1.2753
model score 1.2753
model score -0.1484
model score -0.1732
model score -0.1667
model score -0.1475
model score -0.1142
model score -0.2424
model score -0.2234
model score -0.2398
model score -0.0768
model score 0.1303
model score -0.2424
model score -0.2261
model score -0.2398
model score 0.1254
model score -0.0768
model score -0.2424
model score -0.2261
model score 0.1780
model score -0.2369
model score -0.0797
model score 1.2753
model score 1.2755
model score 1.2772
model score 1.2753
model score 1.2755
model score -0.2071
model score 1.2753
model score 1.2755
model score 1.2772
model score 1.2753
model score 1.2755
model score -0.2687
model score -0.2832
model score -0.2805
model score -0.3025
model score -0.2548
model score -0.2201
model score -0.2080
model score 1.2774
model score 1.2753
model score 1.2756
model score 1.2755
model score 1.2741
model score -0.2600
model score -0.2490
model score -0.2272
model score -0.2531
model score -0.2475
model score -0.2367
model score 0.1989
model score -0.2115
model score 1.4637
model score 0.5867
model score -0.2133
model score -0.2133
model score -0.2133
model score -0.1948
model score -0.1943
model score -0.2361
model score -0.0258
model score -0.1123
model score -0.2361
model score -0.0881
model score -0.2120
model score -0.1386
model score -0.2459
weight: 0.9560 eval: -0.1803 min: -0.3189 max: 2.5171
weight: 0.9337 eval: -0.1102 min: -0.3189 max: 2.5171
weight: 0.9661 eval: -0.2120 min: -0.3189 max: 2.5171
weight: 0.9619 eval: -0.1989 min: -0.3189 max: 2.5171
weight: 0.9435 eval: -0.1410 min: -0.3189 max: 2.5171
weight: 0.9552 eval: -0.1777 min: -0.3189 max: 2.5171
weight: 0.9766 eval: -0.2452 min: -0.3189 max: 2.5171
weight: 0.9680 eval: -0.2182 min: -0.3189 max: 2.5171
weight: 0.9671 eval: -0.2153 min: -0.3189 max: 2.5171
weight: 0.9734 eval: -0.2350 min: -0.3189 max: 2.5171
weight: 0.9576 eval: -0.1852 min: -0.3189 max: 2.5171
weight: 0.8950 eval: 0.0120 min: -0.3189 max: 2.5171
weight: 0.8895 eval: 0.0293 min: -0.3189 max: 2.5171
weight: 0.9319 eval: -0.1042 min: -0.3189 max: 2.5171
weight: 0.9709 eval: -0.2272 min: -0.3189 max: 2.5171
weight: 0.9813 eval: -0.2600 min: -0.3189 max: 2.5171
weight: 0.9955 eval: -0.3049 min: -0.3189 max: 2.5171
weight: 0.8395 eval: 0.1869 min: -0.3189 max: 2.5171
weight: 0.9734 eval: -0.2351 min: -0.3189 max: 2.5171
weight: 0.9708 eval: -0.2269 min: -0.3189 max: 2.5171
weight: 0.3186 eval: 1.8282 min: -0.3189 max: 2.5171
weight: 0.4328 eval: 1.4685 min: -0.3189 max: 2.5171
weight: 0.3650 eval: 1.6822 min: -0.3189 max: 2.5171
weight: 0.3643 eval: 1.6842 min: -0.3189 max: 2.5171
weight: 0.4027 eval: 1.5633 min: -0.3189 max: 2.5171
weight: 0.9749 eval: -0.2397 min: -0.3189 max: 2.5171
weight: 0.9046 eval: -0.0184 min: -0.3189 max: 2.5171
weight: 0.9061 eval: -0.0230 min: -0.3189 max: 2.5171
weight: 0.9061 eval: -0.0232 min: -0.3189 max: 2.5171
weight: 0.9058 eval: -0.0222 min: -0.3189 max: 2.5171
weight: 0.9044 eval: -0.0175 min: -0.3189 max: 2.5171
weight: 0.9767 eval: -0.2457 min: -0.3189 max: 2.5171
weight: 0.9658 eval: -0.2110 min: -0.3189 max: 2.5171
weight: 0.9754 eval: -0.2413 min: -0.3189 max: 2.5171
weight: 0.9707 eval: -0.2265 min: -0.3189 max: 2.5171
weight: 0.9736 eval: -0.2358 min: -0.3189 max: 2.5171
weight: 0.9666 eval: -0.2136 min: -0.3189 max: 2.5171
weight: 0.9717 eval: -0.2298 min: -0.3189 max: 2.5171
weight: 0.9703 eval: -0.2254 min: -0.3189 max: 2.5171
weight: 0.8390 eval: 0.1883 min: -0.3189 max: 2.5171
weight: 0.9720 eval: -0.2308 min: -0.3189 max: 2.5171
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Adding 3409 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -281.5234, CN propb: -281.5234 weights: 0.4164 constraints: 613
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 613
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 613
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 2796
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 2796
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 3409
# command: