# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0330/ # command:# Making conformation for sequence T0330 numbered 1 through 233 Created new target T0330 from T0330.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0330/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0330//projects/compbio/experiments/protein-predict/casp7/T0330/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0330//projects/compbio/experiments/protein-predict/casp7/T0330/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0330/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0330/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)I175.CB) [> 4.2709 = 7.1182 < 9.2537] w=1.0000 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)I174.CB) [> 2.8268 = 4.7113 < 6.1246] w=1.0000 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)V173.CB) [> 4.1968 = 6.9947 < 9.0931] w=1.0000 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)V173.CB) [> 3.0169 = 5.0281 < 6.5365] w=1.0000 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)D177.CB) [> 3.0679 = 5.1132 < 6.6472] w=0.9930 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)G176.CA) [> 2.8713 = 4.7854 < 6.2211] w=0.9930 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)I175.CB) [> 3.5994 = 5.9990 < 7.7987] w=0.9930 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)D177.CB) [> 2.8721 = 4.7869 < 6.2229] w=0.9930 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)I175.CB) [> 4.0936 = 6.8227 < 8.8695] w=0.9792 to align # Constraint # added constraint: constraint((T0330)L101.CB, (T0330)L112.CB) [> 3.6942 = 6.1570 < 8.0041] w=0.9578 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)I172.CB) [> 3.6775 = 6.1292 < 7.9679] w=0.9431 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)S192.CB) [> 3.2663 = 5.4438 < 7.0770] w=0.9369 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)V173.CB) [> 4.3969 = 7.3281 < 9.5266] w=0.9367 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)V110.CB) [> 3.4110 = 5.6850 < 7.3905] w=0.9296 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)L112.CB) [> 3.2092 = 5.3487 < 6.9533] w=0.9296 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)G113.CA) [> 4.1050 = 6.8417 < 8.8942] w=0.9296 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)G113.CA) [> 3.2019 = 5.3365 < 6.9375] w=0.9296 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)R191.CB) [> 3.0573 = 5.0954 < 6.6241] w=0.9227 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)V97.CB) [> 3.2274 = 5.3790 < 6.9926] w=0.9226 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)I172.CB) [> 2.8493 = 4.7488 < 6.1735] w=0.9220 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)A185.CB) [> 2.6616 = 4.4360 < 5.7668] w=0.9220 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)L111.CB) [> 2.5860 = 4.3101 < 5.6031] w=0.9085 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)V110.CB) [> 3.9484 = 6.5806 < 8.5548] w=0.9085 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)L104.CB) [> 3.5469 = 5.9115 < 7.6849] w=0.9085 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)L111.CB) [> 4.3281 = 7.2135 < 9.3775] w=0.9085 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)Q171.CB) [> 3.9557 = 6.5929 < 8.5708] w=0.9079 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)I172.CB) [> 4.4397 = 7.3994 < 9.6193] w=0.9008 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)S192.CB) [> 4.3268 = 7.2114 < 9.3749] w=0.8927 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)Y167.CB) [> 2.9426 = 4.9043 < 6.3756] w=0.8896 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)I193.CB) [> 4.1986 = 6.9977 < 9.0970] w=0.8877 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)L115.CB) [> 3.1633 = 5.2722 < 6.8539] w=0.8874 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)T116.CB) [> 4.1371 = 6.8951 < 8.9636] w=0.8803 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)I193.CB) [> 3.0299 = 5.0497 < 6.5647] w=0.8736 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)L111.CB) [> 3.9457 = 6.5762 < 8.5491] w=0.8735 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)V110.CB) [> 3.6806 = 6.1343 < 7.9746] w=0.8735 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)G113.CA) [> 4.2853 = 7.1422 < 9.2849] w=0.8733 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)Q171.CB) [> 2.8480 = 4.7466 < 6.1706] w=0.8729 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)C184.CB) [> 3.5052 = 5.8421 < 7.5947] w=0.8727 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)R191.CB) [> 4.1239 = 6.8731 < 8.9350] w=0.8594 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L93.CB) [> 3.7841 = 6.3068 < 8.1989] w=0.8592 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)A194.CB) [> 3.6869 = 6.1449 < 7.9884] w=0.8548 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)L93.CB) [> 3.4728 = 5.7880 < 7.5244] w=0.8522 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)T116.CB) [> 2.6576 = 4.4294 < 5.7583] w=0.8451 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)L114.CB) [> 3.4727 = 5.7878 < 7.5241] w=0.8451 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)A190.CB) [> 3.1302 = 5.2170 < 6.7821] w=0.8382 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)A190.CB) [> 3.8298 = 6.3830 < 8.2979] w=0.8382 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)I193.CB) [> 3.6945 = 6.1575 < 8.0048] w=0.8314 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)I193.CB) [> 4.1363 = 6.8938 < 8.9619] w=0.8314 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)L114.CB) [> 4.3647 = 7.2744 < 9.4567] w=0.8311 to align # Constraint # added constraint: constraint((T0330)A159.CB, (T0330)I172.CB) [> 3.7385 = 6.2308 < 8.1001] w=0.8305 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)L112.CB) [> 4.4068 = 7.3446 < 9.5480] w=0.8241 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)I91.CB) [> 3.2531 = 5.4218 < 7.0484] w=0.8240 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)I172.CB) [> 4.4223 = 7.3705 < 9.5816] w=0.8236 to align # Constraint # added constraint: constraint((T0330)P152.CB, (T0330)C184.CB) [> 3.4710 = 5.7850 < 7.5205] w=0.8235 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)A190.CB) [> 3.0026 = 5.0043 < 6.5056] w=0.8234 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)L188.CB) [> 2.9493 = 4.9155 < 6.3901] w=0.8164 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)D177.CB) [> 3.7958 = 6.3263 < 8.2242] w=0.8099 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)G176.CA) [> 2.4161 = 4.0268 < 5.2348] w=0.8099 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)I175.CB) [> 3.9277 = 6.5462 < 8.5100] w=0.8099 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)G176.CA) [> 4.2712 = 7.1186 < 9.2542] w=0.8099 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)I175.CB) [> 3.1026 = 5.1711 < 6.7224] w=0.8099 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)R158.CB) [> 3.7117 = 6.1862 < 8.0421] w=0.8024 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)A140.CB) [> 4.3174 = 7.1957 < 9.3544] w=0.7959 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)G139.CA) [> 3.4464 = 5.7440 < 7.4671] w=0.7959 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)V195.CB) [> 3.4197 = 5.6994 < 7.4093] w=0.7914 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)G139.CA) [> 2.9218 = 4.8698 < 6.3307] w=0.7888 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)T92.CB) [> 3.8572 = 6.4287 < 8.3574] w=0.7888 to align # Constraint # added constraint: constraint((T0330)A159.CB, (T0330)P169.CB) [> 3.6005 = 6.0009 < 7.8011] w=0.7883 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)F138.CB) [> 2.9950 = 4.9917 < 6.4892] w=0.7818 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L94.CB) [> 3.7706 = 6.2844 < 8.1697] w=0.7818 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)F136.CB) [> 3.1699 = 5.2831 < 6.8681] w=0.7812 to align # Constraint # added constraint: constraint((T0330)P169.CB, (T0330)D189.CB) [> 2.8675 = 4.7792 < 6.2130] w=0.7812 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)F136.CB) [> 3.3677 = 5.6129 < 7.2967] w=0.7812 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)T212.CB) [> 3.1436 = 5.2394 < 6.8112] w=0.7790 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)A194.CB) [> 4.0726 = 6.7876 < 8.8239] w=0.7773 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)R191.CB) [> 4.1273 = 6.8788 < 8.9424] w=0.7743 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)A142.CB) [> 2.9938 = 4.9897 < 6.4866] w=0.7677 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)Y167.CB) [> 3.3164 = 5.5273 < 7.1856] w=0.7673 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)G176.CA) [> 4.5887 = 7.6479 < 9.9423] w=0.7607 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)A140.CB) [> 3.9154 = 6.5257 < 8.4835] w=0.7607 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)G139.CA) [> 4.3374 = 7.2290 < 9.3977] w=0.7607 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)L94.CB) [> 3.8274 = 6.3789 < 8.2926] w=0.7536 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L114.CB) [> 4.2719 = 7.1198 < 9.2557] w=0.7536 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)V195.CB) [> 3.0213 = 5.0355 < 6.5461] w=0.7492 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)G211.CA) [> 4.1509 = 6.9181 < 8.9936] w=0.7468 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)V195.CB) [> 3.6697 = 6.1161 < 7.9509] w=0.7422 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)A140.CB) [> 3.0256 = 5.0426 < 6.5554] w=0.7396 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)F141.CB) [> 3.5860 = 5.9767 < 7.7696] w=0.7396 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)D177.CB) [> 4.5776 = 7.6293 < 9.9181] w=0.7396 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)L114.CB) [> 3.2722 = 5.4536 < 7.0897] w=0.7395 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)G113.CA) [> 3.7861 = 6.3102 < 8.2033] w=0.7395 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)I174.CB) [> 4.2193 = 7.0321 < 9.1417] w=0.7392 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)Q171.CB) [> 3.8202 = 6.3670 < 8.2770] w=0.7392 to align # Constraint # added constraint: constraint((T0330)A194.CB, (T0330)F214.CB) [> 4.1711 = 6.9518 < 9.0373] w=0.7327 to align # Constraint # added constraint: constraint((T0330)S192.CB, (T0330)G211.CA) [> 3.4955 = 5.8257 < 7.5735] w=0.7327 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)D181.CB) [> 3.4692 = 5.7819 < 7.5165] w=0.7319 to align # Constraint # added constraint: constraint((T0330)V97.CB, (T0330)F217.CB) [> 3.2848 = 5.4748 < 7.1172] w=0.7307 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)F214.CB) [> 3.8111 = 6.3519 < 8.2574] w=0.7257 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)T178.CB) [> 4.3481 = 7.2469 < 9.4209] w=0.7233 to align # Constraint # added constraint: constraint((T0330)L93.CB, (T0330)P130.CB) [> 3.4422 = 5.7371 < 7.4582] w=0.7206 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)T116.CB) [> 3.9115 = 6.5191 < 8.4749] w=0.7184 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)L115.CB) [> 3.8292 = 6.3820 < 8.2966] w=0.7184 to align # Constraint # added constraint: constraint((T0330)P152.CB, (T0330)E187.CB) [> 2.9725 = 4.9542 < 6.4404] w=0.7180 to align # Constraint # added constraint: constraint((T0330)P169.CB, (T0330)L188.CB) [> 3.4373 = 5.7288 < 7.4475] w=0.7179 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)L112.CB) [> 4.2184 = 7.0307 < 9.1399] w=0.7166 to align # Constraint # added constraint: constraint((T0330)S170.CB, (T0330)D189.CB) [> 3.3860 = 5.6433 < 7.3363] w=0.7108 to align # Constraint # added constraint: constraint((T0330)E150.CB, (T0330)R183.CB) [> 3.1067 = 5.1779 < 6.7312] w=0.7038 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)L213.CB) [> 4.1831 = 6.9718 < 9.0633] w=0.7016 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)F214.CB) [> 3.4498 = 5.7496 < 7.4745] w=0.6975 to align # Constraint # added constraint: constraint((T0330)A194.CB, (T0330)T212.CB) [> 4.2668 = 7.1114 < 9.2448] w=0.6975 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)S192.CB) [> 4.4782 = 7.4637 < 9.7029] w=0.6974 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)A142.CB) [> 4.2209 = 7.0349 < 9.1454] w=0.6974 to align # Constraint # added constraint: constraint((T0330)N149.CB, (T0330)C184.CB) [> 3.1605 = 5.2675 < 6.8477] w=0.6950 to align # Constraint # added constraint: constraint((T0330)K16.CB, (T0330)L94.CB) [> 3.6102 = 6.0170 < 7.8222] w=0.6927 to align # Constraint # added constraint: constraint((T0330)L111.CB, (T0330)Y167.CB) [> 4.1451 = 6.9086 < 8.9811] w=0.6900 to align # Constraint # added constraint: constraint((T0330)N149.CB, (T0330)D181.CB) [> 3.5884 = 5.9807 < 7.7749] w=0.6897 to align # Constraint # added constraint: constraint((T0330)G96.CA, (T0330)F217.CB) [> 3.1940 = 5.3233 < 6.9203] w=0.6885 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)A194.CB) [> 4.2986 = 7.1644 < 9.3137] w=0.6768 to align # Constraint # added constraint: constraint((T0330)A194.CB, (T0330)L213.CB) [> 3.0452 = 5.0753 < 6.5979] w=0.6764 to align # Constraint # added constraint: constraint((T0330)L101.CB, (T0330)I132.CB) [> 4.0372 = 6.7286 < 8.7472] w=0.6758 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)F136.CB) [> 3.1660 = 5.2766 < 6.8595] w=0.6756 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)N118.CB) [> 3.9646 = 6.6076 < 8.5899] w=0.6755 to align # Constraint # added constraint: constraint((T0330)S192.CB, (T0330)T212.CB) [> 4.2082 = 7.0136 < 9.1177] w=0.6728 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)F141.CB) [> 3.8537 = 6.4228 < 8.3497] w=0.6692 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)K126.CB) [> 3.9433 = 6.5722 < 8.5439] w=0.6691 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)S192.CB) [> 2.9891 = 4.9818 < 6.4763] w=0.6689 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)P137.CB) [> 3.4555 = 5.7591 < 7.4869] w=0.6686 to align # Constraint # added constraint: constraint((T0330)L100.CB, (T0330)D221.CB) [> 3.6040 = 6.0068 < 7.8088] w=0.6668 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)V110.CB) [> 4.0241 = 6.7069 < 8.7189] w=0.6644 to align # Constraint # added constraint: constraint((T0330)A159.CB, (T0330)S168.CB) [> 4.1316 = 6.8859 < 8.9517] w=0.6615 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)L115.CB) [> 4.3057 = 7.1761 < 9.3289] w=0.6553 to align # Constraint # added constraint: constraint((T0330)L151.CB, (T0330)C184.CB) [> 3.7516 = 6.2526 < 8.1284] w=0.6547 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)S192.CB) [> 4.3357 = 7.2262 < 9.3941] w=0.6547 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)C184.CB) [> 3.5086 = 5.8476 < 7.6019] w=0.6546 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)G123.CA) [> 4.1020 = 6.8367 < 8.8877] w=0.6482 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)L127.CB) [> 4.1326 = 6.8877 < 8.9541] w=0.6412 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)A190.CB) [> 4.3836 = 7.3060 < 9.4978] w=0.6412 to align # Constraint # added constraint: constraint((T0330)L100.CB, (T0330)F217.CB) [> 2.8676 = 4.7793 < 6.2131] w=0.6392 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)A155.CB) [> 3.9147 = 6.5245 < 8.4818] w=0.6386 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)A140.CB) [> 4.2421 = 7.0702 < 9.1913] w=0.6270 to align # Constraint # added constraint: constraint((T0330)L111.CB, (T0330)P137.CB) [> 3.1092 = 5.1820 < 6.7366] w=0.6263 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)P137.CB) [> 3.3089 = 5.5149 < 7.1693] w=0.6263 to align # Constraint # added constraint: constraint((T0330)K16.CB, (T0330)I91.CB) [> 4.0841 = 6.8068 < 8.8489] w=0.6230 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)I174.CB) [> 4.4108 = 7.3513 < 9.5567] w=0.6199 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)K126.CB) [> 4.1614 = 6.9357 < 9.0164] w=0.6151 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)A196.CB) [> 4.1384 = 6.8973 < 8.9665] w=0.6084 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)A190.CB) [> 3.8756 = 6.4593 < 8.3971] w=0.6072 to align # Constraint # added constraint: constraint((T0330)L156.CB, (T0330)L188.CB) [> 3.8314 = 6.3857 < 8.3014] w=0.6072 to align # Constraint # added constraint: constraint((T0330)P169.CB, (T0330)A190.CB) [> 3.0220 = 5.0366 < 6.5476] w=0.6053 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)M162.CB) [> 3.4511 = 5.7519 < 7.4775] w=0.6006 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)A155.CB) [> 3.7092 = 6.1819 < 8.0365] w=0.5984 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)P210.CB) [> 3.6690 = 6.1149 < 7.9494] w=0.5983 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)N118.CB) [> 4.0584 = 6.7640 < 8.7932] w=0.5983 to align # Constraint # added constraint: constraint((T0330)N118.CB, (T0330)F141.CB) [> 3.6562 = 6.0936 < 7.9217] w=0.5948 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)L114.CB) [> 4.5216 = 7.5360 < 9.7969] w=0.5917 to align # Constraint # added constraint: constraint((T0330)S192.CB, (T0330)P210.CB) [> 3.1552 = 5.2587 < 6.8363] w=0.5913 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)N149.CB) [> 3.8317 = 6.3861 < 8.3019] w=0.5912 to align # Constraint # added constraint: constraint((T0330)P152.CB, (T0330)L188.CB) [> 2.9630 = 4.9384 < 6.4199] w=0.5864 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)I174.CB) [> 4.6467 = 7.7444 < 10.0678] w=0.5848 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)A185.CB) [> 3.7589 = 6.2649 < 8.1443] w=0.5841 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)R158.CB) [> 3.9295 = 6.5491 < 8.5138] w=0.5772 to align # Constraint # added constraint: constraint((T0330)F138.CB, (T0330)R161.CB) [> 3.3999 = 5.6664 < 7.3664] w=0.5771 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)A194.CB) [> 3.4407 = 5.7345 < 7.4549] w=0.5726 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)K215.CB) [> 4.4248 = 7.3746 < 9.5870] w=0.5578 to align # Constraint # added constraint: constraint((T0330)A194.CB, (T0330)G211.CA) [> 4.3724 = 7.2873 < 9.4735] w=0.5567 to align # Constraint # added constraint: constraint((T0330)E120.CB, (T0330)F141.CB) [> 2.9590 = 4.9316 < 6.4111] w=0.5567 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)L94.CB) [> 4.2918 = 7.1529 < 9.2988] w=0.5565 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)L94.CB) [> 4.3546 = 7.2576 < 9.4349] w=0.5565 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)F214.CB) [> 4.1968 = 6.9946 < 9.0930] w=0.5427 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)G139.CA) [> 4.4976 = 7.4959 < 9.7447] w=0.5426 to align # Constraint # added constraint: constraint((T0330)L127.CB, (T0330)F136.CB) [> 3.9507 = 6.5845 < 8.5598] w=0.5356 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)D221.CB) [> 3.3372 = 5.5620 < 7.2306] w=0.5350 to align # Constraint # added constraint: constraint((T0330)F119.CB, (T0330)F141.CB) [> 3.5648 = 5.9413 < 7.7236] w=0.5279 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)Y135.CB) [> 3.7095 = 6.1825 < 8.0373] w=0.5271 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)L213.CB) [> 3.6605 = 6.1008 < 7.9310] w=0.5216 to align # Constraint # added constraint: constraint((T0330)A145.CB, (T0330)I154.CB) [> 3.5036 = 5.8394 < 7.5912] w=0.5208 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)F217.CB) [> 3.8813 = 6.4689 < 8.4095] w=0.5079 to align # Constraint # added constraint: constraint((T0330)F214.CB, (T0330)V223.CB) [> 3.8329 = 6.3882 < 8.3047] w=0.5075 to align # Constraint # added constraint: constraint((T0330)T212.CB, (T0330)V223.CB) [> 3.4576 = 5.7626 < 7.4914] w=0.5075 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)R191.CB) [> 4.1609 = 6.9349 < 9.0153] w=0.5069 to align # Constraint # added constraint: constraint((T0330)L111.CB, (T0330)F138.CB) [> 4.4427 = 7.4044 < 9.6258] w=0.5003 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)D143.CB) [> 3.9112 = 6.5187 < 8.4743] w=0.5002 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)R148.CB) [> 3.6288 = 6.0480 < 7.8624] w=0.4996 to align # Constraint # added constraint: constraint((T0330)R98.CB, (T0330)I132.CB) [> 4.0276 = 6.7126 < 8.7264] w=0.4976 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)L112.CB) [> 4.6603 = 7.7671 < 10.0972] w=0.4952 to align # Constraint # added constraint: constraint((T0330)V17.CB, (T0330)I91.CB) [> 3.5504 = 5.9174 < 7.6926] w=0.4917 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)L224.CB) [> 3.9038 = 6.5063 < 8.4582] w=0.4914 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)F138.CB) [> 4.3046 = 7.1744 < 9.3267] w=0.4882 to align # Constraint # added constraint: constraint((T0330)A155.CB, (T0330)P169.CB) [> 4.3251 = 7.2085 < 9.3711] w=0.4879 to align # Constraint # added constraint: constraint((T0330)A140.CB, (T0330)I154.CB) [> 3.2780 = 5.4634 < 7.1024] w=0.4856 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)K215.CB) [> 3.3187 = 5.5312 < 7.1906] w=0.4804 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)T197.CB) [> 3.5223 = 5.8705 < 7.6316] w=0.4793 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)I174.CB) [> 4.5883 = 7.6472 < 9.9414] w=0.4789 to align # Constraint # added constraint: constraint((T0330)E179.CB, (T0330)L205.CB) [> 4.1040 = 6.8400 < 8.8920] w=0.4787 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)V195.CB) [> 4.3184 = 7.1974 < 9.3567] w=0.4746 to align # Constraint # added constraint: constraint((T0330)A142.CB, (T0330)I154.CB) [> 3.6477 = 6.0795 < 7.9034] w=0.4715 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)V97.CB) [> 4.5472 = 7.5786 < 9.8522] w=0.4652 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)R158.CB) [> 4.3874 = 7.3123 < 9.5061] w=0.4646 to align # Constraint # added constraint: constraint((T0330)L101.CB, (T0330)Y135.CB) [> 2.8673 = 4.7789 < 6.2125] w=0.4638 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)F217.CB) [> 4.1134 = 6.8557 < 8.9124] w=0.4556 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)L213.CB) [> 4.4122 = 7.3537 < 9.5598] w=0.4512 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)A159.CB) [> 3.9597 = 6.5995 < 8.5793] w=0.4505 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)L188.CB) [> 3.7207 = 6.2012 < 8.0616] w=0.4505 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)A185.CB) [> 4.4365 = 7.3941 < 9.6123] w=0.4435 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)F200.CB) [> 3.2706 = 5.4509 < 7.0862] w=0.4371 to align # Constraint # added constraint: constraint((T0330)L15.CB, (T0330)P130.CB) [> 4.0171 = 6.6951 < 8.7036] w=0.4365 to align # Constraint # added constraint: constraint((T0330)E120.CB, (T0330)D143.CB) [> 3.4950 = 5.8250 < 7.5725] w=0.4365 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)P210.CB) [> 3.1462 = 5.2437 < 6.8168] w=0.4365 to align # Constraint # added constraint: constraint((T0330)G123.CA, (T0330)F141.CB) [> 4.1698 = 6.9496 < 9.0345] w=0.4365 to align # Constraint # added constraint: constraint((T0330)I193.CB, (T0330)V223.CB) [> 3.5466 = 5.9110 < 7.6844] w=0.4351 to align # Constraint # added constraint: constraint((T0330)F138.CB, (T0330)R158.CB) [> 3.7840 = 6.3067 < 8.1987] w=0.4342 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)L224.CB) [> 4.2516 = 7.0860 < 9.2118] w=0.4300 to align # Constraint # added constraint: constraint((T0330)T197.CB, (T0330)N216.CB) [> 3.6135 = 6.0224 < 7.8292] w=0.4295 to align # Constraint # added constraint: constraint((T0330)S170.CB, (T0330)A190.CB) [> 4.2647 = 7.1079 < 9.2402] w=0.4292 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)F217.CB) [> 4.2879 = 7.1465 < 9.2904] w=0.4223 to align # Constraint # added constraint: constraint((T0330)D102.CB, (T0330)Y135.CB) [> 4.1689 = 6.9482 < 9.0326] w=0.4215 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)D181.CB) [> 4.6250 = 7.7084 < 10.0209] w=0.4153 to align # Constraint # added constraint: constraint((T0330)R191.CB, (T0330)T212.CB) [> 4.4279 = 7.3799 < 9.5939] w=0.4089 to align # Constraint # added constraint: constraint((T0330)S170.CB, (T0330)R191.CB) [> 4.2608 = 7.1014 < 9.2318] w=0.4082 to align # Constraint # added constraint: constraint((T0330)S105.CB, (T0330)Y135.CB) [> 3.8273 = 6.3788 < 8.2925] w=0.4009 to align # Constraint # added constraint: constraint((T0330)N118.CB, (T0330)A142.CB) [> 3.8929 = 6.4882 < 8.4347] w=0.3971 to align # Constraint # added constraint: constraint((T0330)R98.CB, (T0330)P130.CB) [> 3.8160 = 6.3600 < 8.2680] w=0.3968 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)L205.CB) [> 3.6535 = 6.0892 < 7.9160] w=0.3942 to align # Constraint # added constraint: constraint((T0330)V97.CB, (T0330)I132.CB) [> 4.2245 = 7.0408 < 9.1531] w=0.3872 to align # Constraint # added constraint: constraint((T0330)A159.CB, (T0330)L188.CB) [> 4.1775 = 6.9626 < 9.0513] w=0.3849 to align # Constraint # added constraint: constraint((T0330)F119.CB, (T0330)A142.CB) [> 3.6236 = 6.0394 < 7.8512] w=0.3823 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)T178.CB) [> 4.5031 = 7.5051 < 9.7566] w=0.3731 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)C184.CB) [> 4.0674 = 6.7790 < 8.8128] w=0.3730 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)L224.CB) [> 3.5894 = 5.9823 < 7.7769] w=0.3591 to align # Constraint # added constraint: constraint((T0330)R124.CB, (T0330)D133.CB) [> 4.1054 = 6.8423 < 8.8950] w=0.3590 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)P130.CB) [> 4.3674 = 7.2791 < 9.4628] w=0.3546 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)F214.CB) [> 4.1742 = 6.9569 < 9.0440] w=0.3526 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)G198.CA) [> 3.6237 = 6.0394 < 7.8512] w=0.3520 to align # Constraint # added constraint: constraint((T0330)E179.CB, (T0330)A194.CB) [> 3.9628 = 6.6047 < 8.5861] w=0.3480 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)F217.CB) [> 4.3818 = 7.3029 < 9.4938] w=0.3450 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)L127.CB) [> 4.5108 = 7.5180 < 9.7734] w=0.3385 to align # Constraint # added constraint: constraint((T0330)L104.CB, (T0330)L224.CB) [> 4.2777 = 7.1295 < 9.2684] w=0.3315 to align # Constraint # added constraint: constraint((T0330)A28.CB, (T0330)Y78.CB) [> 3.2007 = 5.3345 < 6.9348] w=0.3309 to align # Constraint # added constraint: constraint((T0330)L93.CB, (T0330)K126.CB) [> 4.0995 = 6.8324 < 8.8822] w=0.3306 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)N199.CB) [> 3.5969 = 5.9948 < 7.7933] w=0.3245 to align # Constraint # added constraint: constraint((T0330)T178.CB, (T0330)F200.CB) [> 3.9400 = 6.5667 < 8.5367] w=0.3174 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)M162.CB) [> 4.2263 = 7.0438 < 9.1570] w=0.3168 to align # Constraint # added constraint: constraint((T0330)I91.CB, (T0330)L129.CB) [> 3.6201 = 6.0335 < 7.8436] w=0.3168 to align # Constraint # added constraint: constraint((T0330)A185.CB, (T0330)P210.CB) [> 4.0982 = 6.8304 < 8.8795] w=0.3168 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)I227.CB) [> 3.9900 = 6.6501 < 8.6451] w=0.3154 to align # Constraint # added constraint: constraint((T0330)L104.CB, (T0330)T220.CB) [> 4.3555 = 7.2591 < 9.4368] w=0.3104 to align # Constraint # added constraint: constraint((T0330)A159.CB, (T0330)A190.CB) [> 4.2802 = 7.1337 < 9.2739] w=0.3097 to align # Constraint # added constraint: constraint((T0330)M20.CB, (T0330)D90.CB) [> 3.3284 = 5.5473 < 7.2115] w=0.3040 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)T197.CB) [> 3.6790 = 6.1316 < 7.9711] w=0.3033 to align # Constraint # added constraint: constraint((T0330)L151.CB, (T0330)E187.CB) [> 4.2781 = 7.1302 < 9.2692] w=0.3027 to align # Constraint # added constraint: constraint((T0330)G139.CA, (T0330)R158.CB) [> 4.0917 = 6.8195 < 8.8653] w=0.3027 to align # Constraint # added constraint: constraint((T0330)L5.CB, (T0330)P137.CB) [> 4.6375 = 7.7292 < 10.0480] w=0.2957 to align # Constraint # added constraint: constraint((T0330)R191.CB, (T0330)I227.CB) [> 3.6187 = 6.0311 < 7.8405] w=0.2943 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)F82.CB) [> 2.9088 = 4.8480 < 6.3024] w=0.2886 to align # Constraint # added constraint: constraint((T0330)P152.CB, (T0330)A185.CB) [> 4.5520 = 7.5867 < 9.8628] w=0.2886 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)N199.CB) [> 3.8608 = 6.4346 < 8.3650] w=0.2816 to align # Constraint # added constraint: constraint((T0330)L156.CB, (T0330)E187.CB) [> 3.4141 = 5.6901 < 7.3972] w=0.2816 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)A142.CB) [> 4.3210 = 7.2016 < 9.3621] w=0.2802 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L101.CB) [> 4.4249 = 7.3748 < 9.5872] w=0.2750 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)C184.CB) [> 3.7560 = 6.2600 < 8.1380] w=0.2745 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)G117.CA) [> 4.6734 = 7.7890 < 10.1257] w=0.2742 to align # Constraint # added constraint: constraint((T0330)N118.CB, (T0330)D143.CB) [> 3.8116 = 6.3526 < 8.2584] w=0.2711 to align # Constraint # added constraint: constraint((T0330)S168.CB, (T0330)D189.CB) [> 4.4512 = 7.4186 < 9.6442] w=0.2701 to align # Constraint # added constraint: constraint((T0330)L93.CB, (T0330)L129.CB) [> 4.1171 = 6.8618 < 8.9204] w=0.2673 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)I53.CB) [> 4.0030 = 6.6716 < 8.6731] w=0.2654 to align # Constraint # added constraint: constraint((T0330)A28.CB, (T0330)L81.CB) [> 4.0293 = 6.7155 < 8.7302] w=0.2619 to align # Constraint # added constraint: constraint((T0330)G123.CA, (T0330)G139.CA) [> 4.4198 = 7.3663 < 9.5762] w=0.2605 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)I227.CB) [> 3.9027 = 6.5045 < 8.4558] w=0.2605 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)D189.CB) [> 3.4784 = 5.7973 < 7.5365] w=0.2604 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)L81.CB) [> 3.1594 = 5.2657 < 6.8454] w=0.2541 to align # Constraint # added constraint: constraint((T0330)V110.CB, (T0330)L224.CB) [> 4.2883 = 7.1471 < 9.2912] w=0.2541 to align # Constraint # added constraint: constraint((T0330)L127.CB, (T0330)G139.CA) [> 4.3838 = 7.3064 < 9.4983] w=0.2540 to align # Constraint # added constraint: constraint((T0330)R186.CB, (T0330)H208.CB) [> 3.7228 = 6.2046 < 8.0660] w=0.2534 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)L115.CB) [> 4.4874 = 7.4790 < 9.7227] w=0.2534 to align # Constraint # added constraint: constraint((T0330)I53.CB, (T0330)A74.CB) [> 3.4157 = 5.6928 < 7.4006] w=0.2478 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)G198.CA) [> 3.0056 = 5.0093 < 6.5121] w=0.2464 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)A185.CB) [> 4.4770 = 7.4616 < 9.7001] w=0.2464 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)Y78.CB) [> 3.2306 = 5.3843 < 6.9996] w=0.2401 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)V223.CB) [> 4.4974 = 7.4956 < 9.7443] w=0.2399 to align # Constraint # added constraint: constraint((T0330)M20.CB, (T0330)F82.CB) [> 3.7647 = 6.2745 < 8.1569] w=0.2394 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)S108.CB) [> 4.3902 = 7.3170 < 9.5122] w=0.2393 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)I91.CB) [> 4.0393 = 6.7322 < 8.7518] w=0.2350 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)L101.CB) [> 4.1941 = 6.9903 < 9.0873] w=0.2327 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)I132.CB) [> 3.4045 = 5.6742 < 7.3765] w=0.2323 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)E187.CB) [> 4.4209 = 7.3681 < 9.5786] w=0.2323 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)F141.CB) [> 4.4397 = 7.3996 < 9.6194] w=0.2321 to align # Constraint # added constraint: constraint((T0330)R83.CB, (T0330)S122.CB) [> 4.0709 = 6.7849 < 8.8204] w=0.2253 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)T178.CB) [> 4.5362 = 7.5603 < 9.8285] w=0.2230 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)R85.CB) [> 3.6895 = 6.1491 < 7.9939] w=0.2217 to align # Constraint # added constraint: constraint((T0330)P152.CB, (T0330)D189.CB) [> 4.4335 = 7.3891 < 9.6058] w=0.2182 to align # Constraint # added constraint: constraint((T0330)A185.CB, (T0330)H208.CB) [> 3.5522 = 5.9203 < 7.6964] w=0.2182 to align # Constraint # added constraint: constraint((T0330)Q171.CB, (T0330)D189.CB) [> 3.5582 = 5.9303 < 7.7094] w=0.2182 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)L205.CB) [> 3.8642 = 6.4404 < 8.3725] w=0.2182 to align # Constraint # added constraint: constraint((T0330)R186.CB, (T0330)P210.CB) [> 4.1958 = 6.9930 < 9.0909] w=0.2112 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)A185.CB) [> 4.6386 = 7.7311 < 10.0504] w=0.2112 to align # Constraint # added constraint: constraint((T0330)T197.CB, (T0330)F217.CB) [> 4.0021 = 6.6701 < 8.6711] w=0.2112 to align # Constraint # added constraint: constraint((T0330)M20.CB, (T0330)R85.CB) [> 3.4401 = 5.7335 < 7.4535] w=0.2112 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)K126.CB) [> 4.2298 = 7.0496 < 9.1645] w=0.2112 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)E187.CB) [> 4.3967 = 7.3278 < 9.5262] w=0.2111 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)A145.CB) [> 3.6823 = 6.1372 < 7.9784] w=0.2047 to align # Constraint # added constraint: constraint((T0330)R186.CB, (T0330)K209.CB) [> 3.5919 = 5.9866 < 7.7825] w=0.2042 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L127.CB) [> 4.5135 = 7.5226 < 9.7794] w=0.2042 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)N216.CB) [> 4.2910 = 7.1517 < 9.2972] w=0.1977 to align # Constraint # added constraint: constraint((T0330)T212.CB, (T0330)I227.CB) [> 4.0090 = 6.6816 < 8.6861] w=0.1971 to align # Constraint # added constraint: constraint((T0330)S2.CB, (T0330)Q171.CB) [> 3.8451 = 6.4086 < 8.3312] w=0.1971 to align # Constraint # added constraint: constraint((T0330)G50.CA, (T0330)K75.CB) [> 3.5797 = 5.9662 < 7.7561] w=0.1950 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)F141.CB) [> 3.9288 = 6.5480 < 8.5123] w=0.1905 to align # Constraint # added constraint: constraint((T0330)F141.CB, (T0330)I154.CB) [> 4.3741 = 7.2902 < 9.4773] w=0.1901 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)T197.CB) [> 3.8263 = 6.3771 < 8.2903] w=0.1901 to align # Constraint # added constraint: constraint((T0330)M20.CB, (T0330)A86.CB) [> 3.4299 = 5.7165 < 7.4315] w=0.1830 to align # Constraint # added constraint: constraint((T0330)S192.CB, (T0330)L213.CB) [> 4.4063 = 7.3438 < 9.5470] w=0.1830 to align # Constraint # added constraint: constraint((T0330)L101.CB, (T0330)G131.CA) [> 4.2513 = 7.0856 < 9.2112] w=0.1829 to align # Constraint # added constraint: constraint((T0330)R22.CB, (T0330)H42.CB) [> 3.5412 = 5.9020 < 7.6726] w=0.1816 to align # Constraint # added constraint: constraint((T0330)V17.CB, (T0330)D90.CB) [> 3.9756 = 6.6261 < 8.6139] w=0.1807 to align # Constraint # added constraint: constraint((T0330)D27.CB, (T0330)L81.CB) [> 3.4556 = 5.7594 < 7.4872] w=0.1760 to align # Constraint # added constraint: constraint((T0330)A28.CB, (T0330)T77.CB) [> 3.3733 = 5.6222 < 7.3089] w=0.1760 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)F136.CB) [> 4.3997 = 7.3328 < 9.5326] w=0.1760 to align # Constraint # added constraint: constraint((T0330)L151.CB, (T0330)D181.CB) [> 3.7701 = 6.2835 < 8.1685] w=0.1760 to align # Constraint # added constraint: constraint((T0330)Y54.CB, (T0330)R64.CB) [> 3.6685 = 6.1142 < 7.9485] w=0.1739 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)N21.CB) [> 4.1231 = 6.8719 < 8.9335] w=0.1696 to align # Constraint # added constraint: constraint((T0330)D49.CB, (T0330)K75.CB) [> 3.7113 = 6.1855 < 8.0412] w=0.1689 to align # Constraint # added constraint: constraint((T0330)T178.CB, (T0330)T201.CB) [> 4.3689 = 7.2815 < 9.4659] w=0.1689 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)H180.CB) [> 3.9830 = 6.6383 < 8.6299] w=0.1689 to align # Constraint # added constraint: constraint((T0330)A86.CB, (T0330)S122.CB) [> 3.8581 = 6.4301 < 8.3592] w=0.1666 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)I132.CB) [> 3.4291 = 5.7152 < 7.4298] w=0.1619 to align # Constraint # added constraint: constraint((T0330)G113.CA, (T0330)Y135.CB) [> 3.6823 = 6.1372 < 7.9784] w=0.1619 to align # Constraint # added constraint: constraint((T0330)F119.CB, (T0330)A140.CB) [> 3.4395 = 5.7324 < 7.4521] w=0.1618 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)V97.CB) [> 4.3812 = 7.3020 < 9.4926] w=0.1617 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)L111.CB) [> 3.7269 = 6.2115 < 8.0749] w=0.1576 to align # Constraint # added constraint: constraint((T0330)T197.CB, (T0330)F214.CB) [> 3.7607 = 6.2678 < 8.1482] w=0.1549 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)D144.CB) [> 3.1727 = 5.2877 < 6.8741] w=0.1548 to align # Constraint # added constraint: constraint((T0330)L151.CB, (T0330)R183.CB) [> 3.2611 = 5.4352 < 7.0658] w=0.1548 to align # Constraint # added constraint: constraint((T0330)S105.CB, (T0330)P137.CB) [> 4.3094 = 7.1823 < 9.3370] w=0.1547 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)I193.CB) [> 4.5028 = 7.5047 < 9.7561] w=0.1499 to align # Constraint # added constraint: constraint((T0330)Y54.CB, (T0330)F71.CB) [> 3.8344 = 6.3906 < 8.3078] w=0.1492 to align # Constraint # added constraint: constraint((T0330)N21.CB, (T0330)S45.CB) [> 4.1404 = 6.9007 < 8.9708] w=0.1486 to align # Constraint # added constraint: constraint((T0330)A145.CB, (T0330)L156.CB) [> 4.4903 = 7.4839 < 9.7290] w=0.1478 to align # Constraint # added constraint: constraint((T0330)M202.CB, (T0330)L213.CB) [> 3.4817 = 5.8029 < 7.5437] w=0.1478 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)L57.CB) [> 3.9637 = 6.6062 < 8.5881] w=0.1478 to align # Constraint # added constraint: constraint((T0330)V32.CB, (T0330)A74.CB) [> 4.1590 = 6.9316 < 9.0111] w=0.1478 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)Y135.CB) [> 3.0914 = 5.1523 < 6.6981] w=0.1478 to align # Constraint # added constraint: constraint((T0330)T178.CB, (T0330)M202.CB) [> 3.5520 = 5.9200 < 7.6961] w=0.1478 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)F136.CB) [> 4.2138 = 7.0230 < 9.1298] w=0.1478 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)C184.CB) [> 4.4119 = 7.3531 < 9.5590] w=0.1477 to align # Constraint # added constraint: constraint((T0330)R64.CB, (T0330)A74.CB) [> 3.4748 = 5.7914 < 7.5288] w=0.1408 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)I79.CB) [> 3.6573 = 6.0955 < 7.9241] w=0.1408 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)L57.CB) [> 4.0639 = 6.7732 < 8.8052] w=0.1408 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)M202.CB) [> 4.0270 = 6.7117 < 8.7252] w=0.1408 to align # Constraint # added constraint: constraint((T0330)Y33.CB, (T0330)V60.CB) [> 3.5105 = 5.8508 < 7.6061] w=0.1338 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)D109.CB) [> 4.1923 = 6.9872 < 9.0833] w=0.1273 to align # Constraint # added constraint: constraint((T0330)Q171.CB, (T0330)R191.CB) [> 3.9039 = 6.5065 < 8.4584] w=0.1267 to align # Constraint # added constraint: constraint((T0330)A185.CB, (T0330)G211.CA) [> 4.4115 = 7.3525 < 9.5582] w=0.1267 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)I53.CB) [> 3.7991 = 6.3318 < 8.2313] w=0.1267 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)F136.CB) [> 3.4212 = 5.7020 < 7.4125] w=0.1267 to align # Constraint # added constraint: constraint((T0330)V17.CB, (T0330)A86.CB) [> 3.9688 = 6.6147 < 8.5991] w=0.1224 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)A140.CB) [> 4.5185 = 7.5309 < 9.7902] w=0.1224 to align # Constraint # added constraint: constraint((T0330)L57.CB, (T0330)I67.CB) [> 3.5203 = 5.8672 < 7.6274] w=0.1211 to align # Constraint # added constraint: constraint((T0330)M1.CB, (T0330)Q171.CB) [> 3.9495 = 6.5825 < 8.5572] w=0.1197 to align # Constraint # added constraint: constraint((T0330)Q171.CB, (T0330)A190.CB) [> 4.6691 = 7.7818 < 10.1164] w=0.1197 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)H134.CB) [> 3.9505 = 6.5841 < 8.5593] w=0.1196 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)H134.CB) [> 4.0513 = 6.7521 < 8.7777] w=0.1196 to align # Constraint # added constraint: constraint((T0330)V56.CB, (T0330)A74.CB) [> 3.7307 = 6.2178 < 8.0832] w=0.1196 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)F138.CB) [> 4.3212 = 7.2020 < 9.3626] w=0.1196 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)V56.CB) [> 3.4799 = 5.7998 < 7.5397] w=0.1175 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)S41.CB) [> 3.4060 = 5.6767 < 7.3797] w=0.1126 to align # Constraint # added constraint: constraint((T0330)V17.CB, (T0330)A26.CB) [> 4.0713 = 6.7855 < 8.8211] w=0.1126 to align # Constraint # added constraint: constraint((T0330)L57.CB, (T0330)A74.CB) [> 3.7674 = 6.2791 < 8.1628] w=0.1126 to align # Constraint # added constraint: constraint((T0330)I53.CB, (T0330)F71.CB) [> 3.6574 = 6.0957 < 7.9244] w=0.1063 to align # Constraint # added constraint: constraint((T0330)G50.CA, (T0330)A74.CB) [> 4.0143 = 6.6905 < 8.6977] w=0.1056 to align # Constraint # added constraint: constraint((T0330)G96.CA, (T0330)T220.CB) [> 4.3664 = 7.2774 < 9.4606] w=0.1056 to align # Constraint # added constraint: constraint((T0330)F44.CB, (T0330)V56.CB) [> 3.8289 = 6.3815 < 8.2959] w=0.1056 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)A185.CB) [> 4.7298 = 7.8829 < 10.2478] w=0.1056 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)A196.CB) [> 3.5718 = 5.9530 < 7.7389] w=0.1056 to align # Constraint # added constraint: constraint((T0330)G198.CA, (T0330)F214.CB) [> 3.5827 = 5.9712 < 7.7626] w=0.1056 to align # Constraint # added constraint: constraint((T0330)D9.CB, (T0330)H180.CB) [> 4.5794 = 7.6323 < 9.9220] w=0.1056 to align # Constraint # added constraint: constraint((T0330)K16.CB, (T0330)T197.CB) [> 4.2672 = 7.1120 < 9.2456] w=0.1056 to align # Constraint # added constraint: constraint((T0330)T116.CB, (T0330)D143.CB) [> 4.3300 = 7.2167 < 9.3817] w=0.1056 to align # Constraint # added constraint: constraint((T0330)I172.CB, (T0330)A185.CB) [> 4.5080 = 7.5134 < 9.7674] w=0.1056 to align # Constraint # added constraint: constraint((T0330)L104.CB, (T0330)Y135.CB) [> 4.4215 = 7.3692 < 9.5799] w=0.1056 to align # Constraint # added constraint: constraint((T0330)L93.CB, (T0330)L127.CB) [> 4.3233 = 7.2055 < 9.3672] w=0.1055 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)S41.CB) [> 3.9845 = 6.6409 < 8.6332] w=0.1000 to align # Constraint # added constraint: constraint((T0330)L57.CB, (T0330)F71.CB) [> 3.9239 = 6.5398 < 8.5017] w=0.0992 to align # Constraint # added constraint: constraint((T0330)E18.CB, (T0330)G198.CA) [> 3.6700 = 6.1166 < 7.9516] w=0.0992 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)T212.CB) [> 3.4872 = 5.8121 < 7.5557] w=0.0986 to align # Constraint # added constraint: constraint((T0330)Y33.CB, (T0330)L62.CB) [> 3.4797 = 5.7995 < 7.5394] w=0.0985 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)T197.CB) [> 3.6591 = 6.0985 < 7.9280] w=0.0985 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)A74.CB) [> 4.2809 = 7.1348 < 9.2752] w=0.0985 to align # Constraint # added constraint: constraint((T0330)F119.CB, (T0330)G139.CA) [> 3.1748 = 5.2914 < 6.8788] w=0.0985 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)V60.CB) [> 4.3109 = 7.1848 < 9.3403] w=0.0985 to align # Constraint # added constraint: constraint((T0330)R148.CB, (T0330)R183.CB) [> 3.5795 = 5.9658 < 7.7555] w=0.0985 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)N118.CB) [> 4.0059 = 6.6766 < 8.6796] w=0.0985 to align # Constraint # added constraint: constraint((T0330)N118.CB, (T0330)D144.CB) [> 4.4150 = 7.3584 < 9.5659] w=0.0944 to align # Constraint # added constraint: constraint((T0330)N21.CB, (T0330)I53.CB) [> 3.8586 = 6.4310 < 8.3602] w=0.0943 to align # Constraint # added constraint: constraint((T0330)T178.CB, (T0330)G198.CA) [> 4.4749 = 7.4582 < 9.6957] w=0.0915 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)A194.CB) [> 3.7673 = 6.2787 < 8.1624] w=0.0915 to align # Constraint # added constraint: constraint((T0330)V173.CB, (T0330)A194.CB) [> 4.2349 = 7.0581 < 9.1756] w=0.0915 to align # Constraint # added constraint: constraint((T0330)L29.CB, (T0330)V56.CB) [> 4.1160 = 6.8601 < 8.9181] w=0.0915 to align # Constraint # added constraint: constraint((T0330)N118.CB, (T0330)F138.CB) [> 3.7953 = 6.3255 < 8.2231] w=0.0915 to align # Constraint # added constraint: constraint((T0330)S192.CB, (T0330)F214.CB) [> 3.7924 = 6.3206 < 8.2168] w=0.0915 to align # Constraint # added constraint: constraint((T0330)V110.CB, (T0330)L228.CB) [> 4.4186 = 7.3643 < 9.5736] w=0.0895 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)F214.CB) [> 2.8604 = 4.7673 < 6.1975] w=0.0885 to align # Constraint # added constraint: constraint((T0330)F44.CB, (T0330)I53.CB) [> 3.4441 = 5.7401 < 7.4622] w=0.0866 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)P130.CB) [> 4.2707 = 7.1178 < 9.2531] w=0.0865 to align # Constraint # added constraint: constraint((T0330)A26.CB, (T0330)H42.CB) [> 3.9519 = 6.5866 < 8.5625] w=0.0859 to align # Constraint # added constraint: constraint((T0330)A185.CB, (T0330)A194.CB) [> 3.2663 = 5.4438 < 7.0769] w=0.0845 to align # Constraint # added constraint: constraint((T0330)V17.CB, (T0330)F82.CB) [> 4.1948 = 6.9913 < 9.0887] w=0.0845 to align # Constraint # added constraint: constraint((T0330)E31.CB, (T0330)Y78.CB) [> 3.9760 = 6.6267 < 8.6148] w=0.0845 to align # Constraint # added constraint: constraint((T0330)V195.CB, (T0330)E219.CB) [> 4.6390 = 7.7317 < 10.0512] w=0.0845 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)A218.CB) [> 4.7173 = 7.8622 < 10.2209] w=0.0845 to align # Constraint # added constraint: constraint((T0330)D177.CB, (T0330)I193.CB) [> 4.1371 = 6.8951 < 8.9636] w=0.0845 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)R107.CB) [> 4.4928 = 7.4879 < 9.7343] w=0.0844 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)L224.CB) [> 4.1772 = 6.9621 < 9.0507] w=0.0844 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)L146.CB) [> 4.1212 = 6.8686 < 8.9292] w=0.0844 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)F119.CB) [> 4.2716 = 7.1193 < 9.2551] w=0.0844 to align # Constraint # added constraint: constraint((T0330)I53.CB, (T0330)I67.CB) [> 3.6740 = 6.1233 < 7.9603] w=0.0788 to align # Constraint # added constraint: constraint((T0330)N21.CB, (T0330)Y78.CB) [> 3.9212 = 6.5354 < 8.4960] w=0.0781 to align # Constraint # added constraint: constraint((T0330)A28.CB, (T0330)I52.CB) [> 2.8975 = 4.8292 < 6.2779] w=0.0774 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)F44.CB) [> 3.7682 = 6.2804 < 8.1645] w=0.0774 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)S170.CB) [> 3.4276 = 5.7126 < 7.4264] w=0.0774 to align # Constraint # added constraint: constraint((T0330)A28.CB, (T0330)I79.CB) [> 3.4912 = 5.8187 < 7.5644] w=0.0774 to align # Constraint # added constraint: constraint((T0330)V32.CB, (T0330)L62.CB) [> 4.0640 = 6.7733 < 8.8053] w=0.0774 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)A74.CB) [> 3.7759 = 6.2932 < 8.1812] w=0.0774 to align # Constraint # added constraint: constraint((T0330)G176.CA, (T0330)T201.CB) [> 3.6972 = 6.1620 < 8.0105] w=0.0774 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)I175.CB) [> 4.5164 = 7.5273 < 9.7855] w=0.0774 to align # Constraint # added constraint: constraint((T0330)N21.CB, (T0330)A86.CB) [> 3.8642 = 6.4403 < 8.3724] w=0.0739 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)H42.CB) [> 3.8241 = 6.3735 < 8.2856] w=0.0711 to align # Constraint # added constraint: constraint((T0330)L62.CB, (T0330)A74.CB) [> 3.8522 = 6.4203 < 8.3464] w=0.0704 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)T220.CB) [> 3.6075 = 6.0124 < 7.8162] w=0.0704 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)I79.CB) [> 4.0334 = 6.7224 < 8.7391] w=0.0704 to align # Constraint # added constraint: constraint((T0330)T13.CB, (T0330)A196.CB) [> 3.8753 = 6.4588 < 8.3964] w=0.0704 to align # Constraint # added constraint: constraint((T0330)G12.CA, (T0330)A196.CB) [> 4.5252 = 7.5420 < 9.8046] w=0.0704 to align # Constraint # added constraint: constraint((T0330)L115.CB, (T0330)F138.CB) [> 4.2864 = 7.1440 < 9.2872] w=0.0701 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)T220.CB) [> 4.4057 = 7.3427 < 9.5456] w=0.0634 to align # Constraint # added constraint: constraint((T0330)L100.CB, (T0330)N216.CB) [> 4.7433 = 7.9056 < 10.2772] w=0.0634 to align # Constraint # added constraint: constraint((T0330)L127.CB, (T0330)A140.CB) [> 3.5250 = 5.8749 < 7.6374] w=0.0634 to align # Constraint # added constraint: constraint((T0330)G123.CA, (T0330)A142.CB) [> 3.4212 = 5.7020 < 7.4126] w=0.0634 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)G139.CA) [> 3.7679 = 6.2799 < 8.1639] w=0.0634 to align # Constraint # added constraint: constraint((T0330)F71.CB, (T0330)G117.CA) [> 3.8477 = 6.4129 < 8.3367] w=0.0633 to align # Constraint # added constraint: constraint((T0330)R191.CB, (T0330)H208.CB) [> 3.9256 = 6.5427 < 8.5055] w=0.0633 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)A225.CB) [> 4.4472 = 7.4120 < 9.6356] w=0.0633 to align # Constraint # added constraint: constraint((T0330)T4.CB, (T0330)L104.CB) [> 4.4762 = 7.4603 < 9.6984] w=0.0633 to align # Constraint # added constraint: constraint((T0330)E18.CB, (T0330)H42.CB) [> 3.4827 = 5.8045 < 7.5459] w=0.0612 to align # Constraint # added constraint: constraint((T0330)F44.CB, (T0330)H180.CB) [> 4.1325 = 6.8875 < 8.9537] w=0.0563 to align # Constraint # added constraint: constraint((T0330)I67.CB, (T0330)G117.CA) [> 4.0964 = 6.8273 < 8.8754] w=0.0563 to align # Constraint # added constraint: constraint((T0330)S45.CB, (T0330)A142.CB) [> 4.0506 = 6.7509 < 8.7762] w=0.0499 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)S170.CB) [> 4.7381 = 7.8968 < 10.2658] w=0.0493 to align # Constraint # added constraint: constraint((T0330)N21.CB, (T0330)H42.CB) [> 3.3452 = 5.5753 < 7.2479] w=0.0493 to align # Constraint # added constraint: constraint((T0330)A196.CB, (T0330)T212.CB) [> 4.4736 = 7.4559 < 9.6927] w=0.0493 to align # Constraint # added constraint: constraint((T0330)R22.CB, (T0330)Y54.CB) [> 3.8449 = 6.4081 < 8.3306] w=0.0493 to align # Constraint # added constraint: constraint((T0330)A68.CB, (T0330)L146.CB) [> 3.3713 = 5.6188 < 7.3044] w=0.0493 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)P137.CB) [> 4.6957 = 7.8262 < 10.1740] w=0.0493 to align # Constraint # added constraint: constraint((T0330)I175.CB, (T0330)R191.CB) [> 4.7271 = 7.8785 < 10.2421] w=0.0493 to align # Constraint # added constraint: constraint((T0330)G123.CA, (T0330)A140.CB) [> 3.7582 = 6.2636 < 8.1427] w=0.0492 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)A140.CB) [> 3.5720 = 5.9533 < 7.7393] w=0.0492 to align # Constraint # added constraint: constraint((T0330)R183.CB, (T0330)S192.CB) [> 4.5782 = 7.6303 < 9.9194] w=0.0443 to align # Constraint # added constraint: constraint((T0330)V60.CB, (T0330)L146.CB) [> 3.4339 = 5.7231 < 7.4401] w=0.0435 to align # Constraint # added constraint: constraint((T0330)V60.CB, (T0330)A142.CB) [> 4.2266 = 7.0443 < 9.1576] w=0.0435 to align # Constraint # added constraint: constraint((T0330)V24.CB, (T0330)D90.CB) [> 3.6098 = 6.0163 < 7.8212] w=0.0429 to align # Constraint # added constraint: constraint((T0330)S58.CB, (T0330)A142.CB) [> 3.4204 = 5.7007 < 7.4109] w=0.0429 to align # Constraint # added constraint: constraint((T0330)V32.CB, (T0330)L57.CB) [> 4.6688 = 7.7813 < 10.1157] w=0.0422 to align # Constraint # added constraint: constraint((T0330)I174.CB, (T0330)V195.CB) [> 3.9907 = 6.6512 < 8.6465] w=0.0422 to align # Constraint # added constraint: constraint((T0330)V97.CB, (T0330)V195.CB) [> 4.6717 = 7.7861 < 10.1220] w=0.0362 to align # Constraint # added constraint: constraint((T0330)Q171.CB, (T0330)S192.CB) [> 4.4308 = 7.3846 < 9.6000] w=0.0352 to align # Constraint # added constraint: constraint((T0330)A74.CB, (T0330)A86.CB) [> 3.3525 = 5.5874 < 7.2637] w=0.0352 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L100.CB) [> 4.4870 = 7.4783 < 9.7218] w=0.0352 to align # Constraint # added constraint: constraint((T0330)I30.CB, (T0330)H180.CB) [> 4.6845 = 7.8075 < 10.1498] w=0.0352 to align # Constraint # added constraint: constraint((T0330)M1.CB, (T0330)S170.CB) [> 4.1419 = 6.9032 < 8.9742] w=0.0352 to align # Constraint # added constraint: constraint((T0330)L112.CB, (T0330)A140.CB) [> 3.0170 = 5.0283 < 6.5368] w=0.0352 to align # Constraint # added constraint: constraint((T0330)C184.CB, (T0330)A194.CB) [> 4.4066 = 7.3444 < 9.5477] w=0.0352 to align # Constraint # added constraint: constraint((T0330)D147.CB, (T0330)R183.CB) [> 3.6294 = 6.0490 < 7.8637] w=0.0352 to align # Constraint # added constraint: constraint((T0330)M48.CB, (T0330)G117.CA) [> 3.4180 = 5.6967 < 7.4057] w=0.0282 to align # Constraint # added constraint: constraint((T0330)R23.CB, (T0330)Y78.CB) [> 4.1757 = 6.9595 < 9.0473] w=0.0282 to align # Constraint # added constraint: constraint((T0330)L104.CB, (T0330)F138.CB) [> 4.2203 = 7.0338 < 9.1439] w=0.0282 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)E157.CB) [> 4.3830 = 7.3050 < 9.4965] w=0.0282 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)H153.CB) [> 4.1761 = 6.9602 < 9.0482] w=0.0282 to align # Constraint # added constraint: constraint((T0330)L100.CB, (T0330)A140.CB) [> 4.1161 = 6.8603 < 8.9183] w=0.0282 to align # Constraint # added constraint: constraint((T0330)L7.CB, (T0330)F141.CB) [> 4.7032 = 7.8387 < 10.1903] w=0.0282 to align # Constraint # added constraint: constraint((T0330)L111.CB, (T0330)G139.CA) [> 4.3605 = 7.2676 < 9.4478] w=0.0282 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)V32.CB) [> 3.6416 = 6.0694 < 7.8902] w=0.0282 to align # Constraint # added constraint: constraint((T0330)I10.CB, (T0330)D43.CB) [> 2.9057 = 4.8429 < 6.2957] w=0.0282 to align # Constraint # added constraint: constraint((T0330)A145.CB, (T0330)H180.CB) [> 4.3085 = 7.1809 < 9.3352] w=0.0282 to align # Constraint # added constraint: constraint((T0330)F71.CB, (T0330)A140.CB) [> 3.7520 = 6.2534 < 8.1294] w=0.0281 to align # Constraint # added constraint: constraint((T0330)G139.CA, (T0330)I154.CB) [> 4.4995 = 7.4992 < 9.7490] w=0.0281 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)K231.CB) [> 3.7613 = 6.2688 < 8.1494] w=0.0262 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)T212.CB) [> 4.3789 = 7.2982 < 9.4876] w=0.0252 to align # Constraint # added constraint: constraint((T0330)I52.CB, (T0330)K70.CB) [> 2.9443 = 4.9071 < 6.3793] w=0.0218 to align # Constraint # added constraint: constraint((T0330)I182.CB, (T0330)V195.CB) [> 3.7566 = 6.2609 < 8.1392] w=0.0211 to align # Constraint # added constraint: constraint((T0330)M1.CB, (T0330)L111.CB) [> 4.4972 = 7.4953 < 9.7439] w=0.0211 to align # Constraint # added constraint: constraint((T0330)E99.CB, (T0330)T220.CB) [> 4.6928 = 7.8213 < 10.1677] w=0.0211 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)L205.CB) [> 3.8613 = 6.4356 < 8.3662] w=0.0211 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)M202.CB) [> 4.1230 = 6.8717 < 8.9333] w=0.0211 to align # Constraint # added constraint: constraint((T0330)F44.CB, (T0330)F82.CB) [> 2.7617 = 4.6029 < 5.9838] w=0.0211 to align # Constraint # added constraint: constraint((T0330)G117.CA, (T0330)G139.CA) [> 3.4846 = 5.8077 < 7.5500] w=0.0211 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)G117.CA) [> 4.7197 = 7.8661 < 10.2260] w=0.0211 to align # Constraint # added constraint: constraint((T0330)I67.CB, (T0330)T116.CB) [> 4.6838 = 7.8063 < 10.1482] w=0.0211 to align # Constraint # added constraint: constraint((T0330)M48.CB, (T0330)A74.CB) [> 2.4757 = 4.1262 < 5.3641] w=0.0211 to align # Constraint # added constraint: constraint((T0330)R107.CB, (T0330)F138.CB) [> 4.4531 = 7.4219 < 9.6485] w=0.0211 to align # Constraint # added constraint: constraint((T0330)L14.CB, (T0330)L25.CB) [> 3.9395 = 6.5658 < 8.5355] w=0.0211 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)L25.CB) [> 4.6265 = 7.7108 < 10.0241] w=0.0211 to align # Constraint # added constraint: constraint((T0330)G96.CA, (T0330)V195.CB) [> 4.3721 = 7.2869 < 9.4730] w=0.0211 to align # Constraint # added constraint: constraint((T0330)G61.CA, (T0330)A74.CB) [> 4.2683 = 7.1138 < 9.2480] w=0.0211 to align # Constraint # added constraint: constraint((T0330)D11.CB, (T0330)G176.CA) [> 4.1586 = 6.9310 < 9.0103] w=0.0208 to align # Constraint # added constraint: constraint((T0330)V6.CB, (T0330)R107.CB) [> 4.6711 = 7.7851 < 10.1206] w=0.0141 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)D147.CB) [> 3.4098 = 5.6831 < 7.3880] w=0.0141 to align # Constraint # added constraint: constraint((T0330)G139.CA, (T0330)M162.CB) [> 3.6687 = 6.1146 < 7.9489] w=0.0141 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)E222.CB) [> 4.6962 = 7.8271 < 10.1752] w=0.0141 to align # Constraint # added constraint: constraint((T0330)A145.CB, (T0330)R183.CB) [> 4.4505 = 7.4175 < 9.6428] w=0.0141 to align # Constraint # added constraint: constraint((T0330)R3.CB, (T0330)S192.CB) [> 3.9942 = 6.6570 < 8.6541] w=0.0141 to align # Constraint # added constraint: constraint((T0330)L25.CB, (T0330)T116.CB) [> 4.3011 = 7.1685 < 9.3191] w=0.0140 to align # Constraint # added constraint: constraint((T0330)A103.CB, (T0330)L228.CB) [> 4.6121 = 7.6868 < 9.9929] w=0.0121 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)V32.CB) [> 4.7886 = 7.9810 < 10.3753] w=0.0070 to align # Constraint # added constraint: constraint((T0330)G61.CA, (T0330)D177.CB) [> 4.7220 = 7.8700 < 10.2310] w=0.0070 to align # Constraint # added constraint: constraint((T0330)A74.CB, (T0330)T116.CB) [> 4.3672 = 7.2787 < 9.4624] w=0.0070 to align # Constraint # added constraint: constraint((T0330)L114.CB, (T0330)K128.CB) [> 4.6979 = 7.8298 < 10.1788] w=0.0070 to align # Constraint # added constraint: constraint((T0330)F8.CB, (T0330)V195.CB) [> 4.4451 = 7.4085 < 9.6310] w=0.0014 to align # Constraint # added constraint: constraint((T0330)M162.CB, (T0330)Q171.CB) [> 4.7478 = 7.9130 < 10.2869] w=0.0014 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0330/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0330/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 15, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 840, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 850, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 852, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 854, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 856, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 858, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 860, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 862, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 864, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 866, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 868, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 870, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 872, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 874, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 876, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 15, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 2 < previous residue 233 in servers/POMYSL_TS3.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 674, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 676, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 11, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 Skipped atom 182, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 184, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 186, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 188, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 110, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 112, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 430, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 432, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 434, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 436, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 590, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 592, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 594, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 596, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 886, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 888, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 890, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 Skipped atom 306, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 666, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 668, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0330 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 272 model score 0.2955 model score 0.3090 model score 0.8862 model score 0.2167 model score 0.2695 model score 0.0463 model score 0.0987 model score 0.0415 model score 0.3194 model score 0.5109 model score 0.1406 model score 0.2728 model score 0.2770 model score 0.5014 model score 0.5054 model score -0.5769 model score 0.0408 model score 0.5614 model score 1.8520 model score -0.0028 model score 1.6668 model score 1.8098 model score 1.8347 model score 1.6263 model score 1.6731 model score -0.5686 model score -0.4940 model score -0.4642 model score -0.4704 model score -0.2867 model score -0.3215 model score -0.5177 model score -0.5199 model score -0.5191 model score -0.5152 model score -0.3470 model score -0.2023 model score 0.1975 model score 0.1164 model score -0.4773 model score -0.3710 model score -0.1790 model score 1.2575 model score 1.2565 model score 1.2648 model score 1.2616 model score 1.2601 model score -0.5216 model score -0.5199 model score -0.4327 model score -0.4007 model score -0.4699 model score -0.4803 model score -0.3470 model score -0.5177 model score -0.5199 model score -0.5199 model score -0.5635 model score 1.1017 model score 1.1581 model score -0.0009 model score 1.4593 model score 1.2626 model score 1.2591 model score 1.2589 model score 1.2620 model score 1.2589 model score 1.2626 model score 1.2617 model score 1.2619 model score 1.2589 model score 1.2615 model score 1.8603 model score 1.8605 model score 2.6341 model score 2.1457 model score 2.5848 model score -0.5084 model score -0.1873 model score -0.0656 model score 0.0230 model score -0.0802 model score 1.2537 model score 1.2573 model score 1.2552 model score 1.2559 model score 1.2601 model score -0.4897 model score -0.4797 model score -0.3440 model score -0.3493 model score -0.4030 model score -0.0795 model score -0.1967 model score -0.2330 model score 0.3255 model score -0.2194 model score -0.4905 model score -0.4595 model score -0.3331 model score -0.4200 model score -0.4245 model score -0.5274 model score -0.5651 model score -0.5686 model score 0.0106 model score 0.1258 model score 0.2267 model score 0.0762 model score 0.1891 model score -0.0904 model score 0.0886 model score -0.0225 model score 0.1568 model score -0.1917 model score -0.4562 model score -0.4836 model score -0.4265 model score -0.4665 model score -0.3902 model score -0.4587 model score -0.4265 model score -0.4589 model score -0.4665 model score -0.4535 model score -0.6217 model score -0.5265 model score -0.4670 model score -0.6160 model score -0.5029 model score 1.2856 model score 1.2903 model score 1.2891 model score 1.3039 model score 1.3072 model score -0.4765 model score -0.5035 model score -0.4925 model score -0.4956 model score -0.4682 model score -0.4041 model score -0.3944 model score -0.4820 model score -0.3926 model score -0.5048 model score -0.4042 model score -0.4883 model score -0.3871 model score -0.4664 model score -0.4391 model score -0.4555 model score -0.4661 model score -0.4661 model score -0.4661 model score -0.4660 model score -0.4660 model score -0.3501 model score -0.3730 model score -0.3898 model score -0.4450 model score -0.2814 model score -0.4946 model score -0.5029 model score -0.4718 model score -0.4544 model score -0.4404 model score -0.3682 model score -0.3928 model score -0.4542 model score -0.4130 model score -0.4029 model score -0.4643 model score -0.4559 model score -0.4978 model score -0.4391 model score -0.5122 model score -0.3501 model score -0.2814 model score -0.3898 model score -0.3730 model score -0.3268 model score -0.4064 model score -0.4492 model score -0.2918 model score -0.3351 model score -0.4091 model score 1.2537 model score 1.2553 model score 1.2583 model score 1.2584 model score 1.2566 model score 1.2567 model score 1.2584 model score 1.2579 model score 1.2586 model score 1.2583 model score -0.3997 model score -0.0570 model score -0.3120 model score -0.0852 model score -0.3452 model score -0.5029 model score -0.3345 model score -0.2845 model score 0.0452 model score -0.4113 model score -0.4953 model score -0.3681 model score -0.3028 model score 0.0752 model score -0.4577 model score -0.4943 model score -0.3357 model score 0.0641 model score -0.3511 model score -0.3067 model score 1.2537 model score 1.2566 model score 1.2552 model score 1.2553 model score 1.2568 model score -0.5334 model score 1.2537 model score 1.2566 model score 1.2552 model score 1.2553 model score 1.2568 model score -0.5925 model score -0.5751 model score -0.5882 model score -0.3239 model score -0.3310 model score -0.4576 model score -0.3831 model score 1.2580 model score 1.2558 model score 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weight: 0.9640 eval: -0.4914 min: -0.6217 max: 2.6341 weight: 0.2919 eval: 1.9400 min: -0.6217 max: 2.6341 weight: 0.2279 eval: 2.1714 min: -0.6217 max: 2.6341 weight: 0.1768 eval: 2.3563 min: -0.6217 max: 2.6341 weight: 0.1902 eval: 2.3078 min: -0.6217 max: 2.6341 weight: 0.2860 eval: 1.9611 min: -0.6217 max: 2.6341 weight: 0.8946 eval: -0.2405 min: -0.6217 max: 2.6341 weight: 0.9577 eval: -0.4687 min: -0.6217 max: 2.6341 weight: 0.9456 eval: -0.4248 min: -0.6217 max: 2.6341 weight: 0.9545 eval: -0.4572 min: -0.6217 max: 2.6341 weight: 0.8204 eval: 0.0280 min: -0.6217 max: 2.6341 weight: 0.9493 eval: -0.4384 min: -0.6217 max: 2.6341 weight: 0.9235 eval: -0.3448 min: -0.6217 max: 2.6341 weight: 0.9228 eval: -0.3423 min: -0.6217 max: 2.6341 weight: 0.9373 eval: -0.3949 min: -0.6217 max: 2.6341 weight: 0.9121 eval: -0.3036 min: -0.6217 max: 2.6341 weight: 0.9544 eval: -0.4566 min: -0.6217 max: 2.6341 weight: 0.9130 eval: -0.3070 min: -0.6217 max: 2.6341 weight: 0.9555 eval: -0.4609 min: -0.6217 max: 2.6341 weight: 0.9073 eval: -0.2865 min: -0.6217 max: 2.6341 weight: 0.9410 eval: -0.4083 min: -0.6217 max: 2.6341 weight: 0.8932 eval: -0.2353 min: -0.6217 max: 2.6341 weight: 0.8591 eval: -0.1120 min: -0.6217 max: 2.6341 weight: 0.9713 eval: -0.5180 min: -0.6217 max: 2.6341 Adding 7774 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -380.9764, CN propb: -380.9764 weights: 0.3729 constraints: 641 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 641 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 641 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 7133 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 7133 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 7774 # command: