# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0325/ # command:# Making conformation for sequence T0325 numbered 1 through 262 Created new target T0325 from T0325.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0325/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0325//projects/compbio/experiments/protein-predict/casp7/T0325/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0325//projects/compbio/experiments/protein-predict/casp7/T0325/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0325/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0325/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0325)H125.CB, (T0325)R155.CB) [> 3.4964 = 5.8273 < 7.5754] w=1.0000 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)L154.CB) [> 3.4769 = 5.7949 < 7.5334] w=0.9634 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)L58.CB) [> 3.6292 = 6.0486 < 7.8632] w=0.9232 to align # Constraint # added constraint: constraint((T0325)M48.CB, (T0325)I60.CB) [> 3.7386 = 6.2310 < 8.1003] w=0.9200 to align # Constraint # added constraint: constraint((T0325)P123.CB, (T0325)L152.CB) [> 3.7356 = 6.2259 < 8.0937] w=0.9186 to align # Constraint # added constraint: constraint((T0325)A51.CB, (T0325)I60.CB) [> 3.2698 = 5.4496 < 7.0845] w=0.9063 to align # Constraint # added constraint: constraint((T0325)D124.CB, (T0325)L152.CB) [> 3.7369 = 6.2282 < 8.0966] w=0.9009 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)R155.CB) [> 3.9870 = 6.6450 < 8.6385] w=0.8988 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)H125.CB) [> 4.0158 = 6.6930 < 8.7009] w=0.8788 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)G61.CA) [> 3.8462 = 6.4104 < 8.3335] w=0.8713 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)A59.CB) [> 3.3594 = 5.5991 < 7.2788] w=0.8690 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)G61.CA) [> 3.5562 = 5.9270 < 7.7050] w=0.8490 to align # Constraint # added constraint: constraint((T0325)H125.CB, (T0325)L154.CB) [> 4.0511 = 6.7517 < 8.7773] w=0.8405 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)A59.CB) [> 3.5774 = 5.9623 < 7.7510] w=0.8146 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)I60.CB) [> 3.7220 = 6.2032 < 8.0642] w=0.8045 to align # Constraint # added constraint: constraint((T0325)M117.CB, (T0325)Y150.CB) [> 3.6740 = 6.1233 < 7.9603] w=0.7946 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)L154.CB) [> 3.6129 = 6.0215 < 7.8279] w=0.7930 to align # Constraint # added constraint: constraint((T0325)I113.CB, (T0325)L146.CB) [> 3.8278 = 6.3797 < 8.2936] w=0.7793 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)P123.CB) [> 3.3047 = 5.5078 < 7.1601] w=0.7596 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)L58.CB) [> 3.8405 = 6.4009 < 8.3211] w=0.7575 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)H125.CB) [> 3.1208 = 5.2014 < 6.7618] w=0.7538 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)A59.CB) [> 3.8561 = 6.4268 < 8.3549] w=0.7533 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)I60.CB) [> 3.9123 = 6.5206 < 8.4767] w=0.7483 to align # Constraint # added constraint: constraint((T0325)D110.CB, (T0325)L146.CB) [> 3.1312 = 5.2187 < 6.7844] w=0.7461 to align # Constraint # added constraint: constraint((T0325)M48.CB, (T0325)S119.CB) [> 3.1928 = 5.3213 < 6.9177] w=0.7363 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)P123.CB) [> 3.5639 = 5.9398 < 7.7217] w=0.7355 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)I60.CB) [> 3.8493 = 6.4155 < 8.3401] w=0.7309 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)L58.CB) [> 3.7179 = 6.1964 < 8.0554] w=0.7084 to align # Constraint # added constraint: constraint((T0325)M48.CB, (T0325)F116.CB) [> 3.8879 = 6.4798 < 8.4237] w=0.6928 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)P123.CB) [> 3.5376 = 5.8960 < 7.6648] w=0.6923 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)S34.CB) [> 3.7112 = 6.1854 < 8.0410] w=0.6833 to align # Constraint # added constraint: constraint((T0325)D124.CB, (T0325)P153.CB) [> 3.7686 = 6.2810 < 8.1653] w=0.6809 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)D124.CB) [> 3.7521 = 6.2535 < 8.1295] w=0.6735 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)V62.CB) [> 3.8610 = 6.4351 < 8.3656] w=0.6734 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)T35.CB) [> 3.8145 = 6.3575 < 8.2647] w=0.6709 to align # Constraint # added constraint: constraint((T0325)I113.CB, (T0325)Y150.CB) [> 3.5534 = 5.9224 < 7.6991] w=0.6685 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T36.CB) [> 3.6826 = 6.1377 < 7.9790] w=0.6642 to align # Constraint # added constraint: constraint((T0325)A143.CB, (T0325)L154.CB) [> 3.9756 = 6.6259 < 8.6137] w=0.6633 to align # Constraint # added constraint: constraint((T0325)I113.CB, (T0325)A147.CB) [> 3.9678 = 6.6131 < 8.5970] w=0.6608 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)I126.CB) [> 3.0697 = 5.1162 < 6.6510] w=0.6602 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)H63.CB) [> 3.3533 = 5.5888 < 7.2654] w=0.6591 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)T35.CB) [> 3.7804 = 6.3006 < 8.1908] w=0.6589 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)N156.CB) [> 4.0884 = 6.8140 < 8.8581] w=0.6506 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)A37.CB) [> 3.9523 = 6.5871 < 8.5633] w=0.6430 to align # Constraint # added constraint: constraint((T0325)E49.CB, (T0325)S119.CB) [> 3.6309 = 6.0514 < 7.8668] w=0.6385 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)A143.CB) [> 3.6695 = 6.1159 < 7.9506] w=0.6328 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)H63.CB) [> 3.4960 = 5.8267 < 7.5747] w=0.6315 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)A143.CB) [> 3.6042 = 6.0071 < 7.8092] w=0.6307 to align # Constraint # added constraint: constraint((T0325)W109.CB, (T0325)I126.CB) [> 4.0196 = 6.6994 < 8.7092] w=0.6301 to align # Constraint # added constraint: constraint((T0325)M117.CB, (T0325)L152.CB) [> 3.6070 = 6.0117 < 7.8152] w=0.6266 to align # Constraint # added constraint: constraint((T0325)H125.CB, (T0325)L152.CB) [> 3.6864 = 6.1440 < 7.9872] w=0.6219 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T36.CB) [> 3.6390 = 6.0650 < 7.8845] w=0.6125 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)G61.CA) [> 3.9725 = 6.6209 < 8.6071] w=0.6123 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)F116.CB) [> 3.4086 = 5.6809 < 7.3852] w=0.6056 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)G61.CA) [> 3.5538 = 5.9230 < 7.6999] w=0.5999 to align # Constraint # added constraint: constraint((T0325)L45.CB, (T0325)S119.CB) [> 3.3004 = 5.5006 < 7.1508] w=0.5948 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)R121.CB) [> 3.4861 = 5.8101 < 7.5531] w=0.5947 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)A157.CB) [> 3.5518 = 5.9196 < 7.6955] w=0.5932 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)I126.CB) [> 3.9552 = 6.5921 < 8.5697] w=0.5796 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)S34.CB) [> 4.0837 = 6.8062 < 8.8481] w=0.5764 to align # Constraint # added constraint: constraint((T0325)W109.CB, (T0325)A143.CB) [> 3.8780 = 6.4633 < 8.4023] w=0.5730 to align # Constraint # added constraint: constraint((T0325)R52.CB, (T0325)R121.CB) [> 3.7694 = 6.2823 < 8.1670] w=0.5710 to align # Constraint # added constraint: constraint((T0325)H27.CB, (T0325)L58.CB) [> 3.9170 = 6.5283 < 8.4868] w=0.5626 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T35.CB) [> 3.4542 = 5.7570 < 7.4841] w=0.5613 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)N156.CB) [> 3.5350 = 5.8916 < 7.6591] w=0.5557 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)N156.CB) [> 3.6206 = 6.0344 < 7.8447] w=0.5543 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)S34.CB) [> 3.4543 = 5.7571 < 7.4842] w=0.5477 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)D127.CB) [> 4.0602 = 6.7670 < 8.7971] w=0.5468 to align # Constraint # added constraint: constraint((T0325)I114.CB, (T0325)Y150.CB) [> 3.7116 = 6.1860 < 8.0418] w=0.5467 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)A147.CB) [> 3.7345 = 6.2242 < 8.0915] w=0.5463 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)L139.CB) [> 3.3289 = 5.5481 < 7.2126] w=0.5445 to align # Constraint # added constraint: constraint((T0325)D124.CB, (T0325)R155.CB) [> 4.0888 = 6.8147 < 8.8591] w=0.5437 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)D127.CB) [> 3.2789 = 5.4648 < 7.1042] w=0.5384 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)H63.CB) [> 3.5440 = 5.9067 < 7.6787] w=0.5349 to align # Constraint # added constraint: constraint((T0325)Y106.CB, (T0325)V142.CB) [> 3.0127 = 5.0212 < 6.5276] w=0.5318 to align # Constraint # added constraint: constraint((T0325)M48.CB, (T0325)R121.CB) [> 3.3233 = 5.5389 < 7.2005] w=0.5307 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)L154.CB) [> 3.8631 = 6.4385 < 8.3701] w=0.5304 to align # Constraint # added constraint: constraint((T0325)H125.CB, (T0325)P153.CB) [> 3.3191 = 5.5319 < 7.1915] w=0.5228 to align # Constraint # added constraint: constraint((T0325)R52.CB, (T0325)G120.CA) [> 3.7915 = 6.3192 < 8.2150] w=0.5184 to align # Constraint # added constraint: constraint((T0325)L197.CB, (T0325)I210.CB) [> 3.7081 = 6.1802 < 8.0343] w=0.5178 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)V62.CB) [> 3.8919 = 6.4866 < 8.4326] w=0.5158 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)D127.CB) [> 4.1375 = 6.8958 < 8.9645] w=0.5123 to align # Constraint # added constraint: constraint((T0325)F44.CB, (T0325)F116.CB) [> 3.5456 = 5.9094 < 7.6822] w=0.5050 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)S34.CB) [> 3.7499 = 6.2499 < 8.1249] w=0.5032 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)I60.CB) [> 3.9716 = 6.6194 < 8.6052] w=0.4980 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T35.CB) [> 3.9429 = 6.5715 < 8.5429] w=0.4975 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)A37.CB) [> 3.3416 = 5.5693 < 7.2401] w=0.4972 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)A47.CB) [> 3.8113 = 6.3522 < 8.2579] w=0.4946 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)A157.CB) [> 4.0874 = 6.8124 < 8.8561] w=0.4840 to align # Constraint # added constraint: constraint((T0325)Y106.CB, (T0325)L146.CB) [> 3.6253 = 6.0421 < 7.8548] w=0.4811 to align # Constraint # added constraint: constraint((T0325)I113.CB, (T0325)P123.CB) [> 3.8425 = 6.4042 < 8.3254] w=0.4774 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)I113.CB) [> 3.8837 = 6.4728 < 8.4146] w=0.4719 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)R122.CB) [> 3.8657 = 6.4428 < 8.3756] w=0.4695 to align # Constraint # added constraint: constraint((T0325)L102.CB, (T0325)K138.CB) [> 3.6337 = 6.0562 < 7.8731] w=0.4685 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)T33.CB) [> 3.3053 = 5.5089 < 7.1615] w=0.4669 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)A47.CB) [> 3.3879 = 5.6465 < 7.3405] w=0.4633 to align # Constraint # added constraint: constraint((T0325)W109.CB, (T0325)V142.CB) [> 3.9630 = 6.6051 < 8.5866] w=0.4631 to align # Constraint # added constraint: constraint((T0325)D110.CB, (T0325)V142.CB) [> 3.7711 = 6.2852 < 8.1707] w=0.4609 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)H125.CB) [> 4.2439 = 7.0732 < 9.1952] w=0.4592 to align # Constraint # added constraint: constraint((T0325)D124.CB, (T0325)L154.CB) [> 3.6465 = 6.0776 < 7.9008] w=0.4541 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)M48.CB) [> 4.2164 = 7.0273 < 9.1355] w=0.4540 to align # Constraint # added constraint: constraint((T0325)L45.CB, (T0325)S115.CB) [> 3.5861 = 5.9769 < 7.7700] w=0.4524 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)A157.CB) [> 4.1347 = 6.8912 < 8.9585] w=0.4501 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)L139.CB) [> 3.9685 = 6.6141 < 8.5983] w=0.4488 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)V243.CB) [> 4.1740 = 6.9567 < 9.0437] w=0.4446 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)S34.CB) [> 3.9272 = 6.5454 < 8.5090] w=0.4409 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)I126.CB) [> 3.3569 = 5.5948 < 7.2733] w=0.4389 to align # Constraint # added constraint: constraint((T0325)L102.CB, (T0325)V142.CB) [> 3.2612 = 5.4353 < 7.0659] w=0.4385 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)P153.CB) [> 4.1576 = 6.9293 < 9.0082] w=0.4346 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)H63.CB) [> 3.6199 = 6.0331 < 7.8430] w=0.4314 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)I126.CB) [> 4.4371 = 7.3952 < 9.6138] w=0.4286 to align # Constraint # added constraint: constraint((T0325)L197.CB, (T0325)V243.CB) [> 3.5036 = 5.8393 < 7.5911] w=0.4247 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)T33.CB) [> 3.6539 = 6.0899 < 7.9168] w=0.4220 to align # Constraint # added constraint: constraint((T0325)I113.CB, (T0325)I126.CB) [> 3.9298 = 6.5497 < 8.5146] w=0.4218 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)N211.CB) [> 3.6900 = 6.1500 < 7.9950] w=0.4194 to align # Constraint # added constraint: constraint((T0325)L140.CB, (T0325)N156.CB) [> 3.8867 = 6.4778 < 8.4212] w=0.4173 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)A55.CB) [> 3.8942 = 6.4903 < 8.4373] w=0.4162 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)L58.CB) [> 3.6322 = 6.0536 < 7.8698] w=0.4116 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)V105.CB) [> 3.7898 = 6.3163 < 8.2112] w=0.4109 to align # Constraint # added constraint: constraint((T0325)V32.CB, (T0325)L58.CB) [> 3.8873 = 6.4789 < 8.4225] w=0.4103 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)V32.CB) [> 3.9687 = 6.6145 < 8.5988] w=0.4102 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)L58.CB) [> 3.8698 = 6.4497 < 8.3846] w=0.4093 to align # Constraint # added constraint: constraint((T0325)K244.CB, (T0325)L254.CB) [> 3.7173 = 6.1954 < 8.0541] w=0.4055 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)I210.CB) [> 3.5094 = 5.8490 < 7.6037] w=0.4034 to align # Constraint # added constraint: constraint((T0325)F44.CB, (T0325)V62.CB) [> 3.7016 = 6.1693 < 8.0201] w=0.4018 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)A51.CB) [> 3.9023 = 6.5039 < 8.4550] w=0.4013 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)V62.CB) [> 4.0956 = 6.8259 < 8.8737] w=0.4011 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)V142.CB) [> 3.4617 = 5.7694 < 7.5003] w=0.4004 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)F116.CB) [> 4.0047 = 6.6744 < 8.6768] w=0.3989 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)L154.CB) [> 3.7251 = 6.2085 < 8.0710] w=0.3958 to align # Constraint # added constraint: constraint((T0325)L197.CB, (T0325)A246.CB) [> 3.6092 = 6.0154 < 7.8200] w=0.3958 to align # Constraint # added constraint: constraint((T0325)T20.CB, (T0325)S50.CB) [> 3.6855 = 6.1425 < 7.9853] w=0.3938 to align # Constraint # added constraint: constraint((T0325)T20.CB, (T0325)A47.CB) [> 3.7649 = 6.2748 < 8.1573] w=0.3929 to align # Constraint # added constraint: constraint((T0325)L197.CB, (T0325)I247.CB) [> 4.0950 = 6.8250 < 8.8726] w=0.3927 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)D124.CB) [> 3.7325 = 6.2209 < 8.0871] w=0.3903 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)L140.CB) [> 3.4583 = 5.7639 < 7.4930] w=0.3884 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)T36.CB) [> 3.9523 = 6.5872 < 8.5634] w=0.3843 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)T35.CB) [> 4.2082 = 7.0137 < 9.1178] w=0.3825 to align # Constraint # added constraint: constraint((T0325)I24.CB, (T0325)P56.CB) [> 3.6456 = 6.0760 < 7.8988] w=0.3825 to align # Constraint # added constraint: constraint((T0325)V19.CB, (T0325)A47.CB) [> 3.6574 = 6.0956 < 7.9243] w=0.3807 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)V32.CB) [> 3.6780 = 6.1299 < 7.9689] w=0.3796 to align # Constraint # added constraint: constraint((T0325)V200.CB, (T0325)I210.CB) [> 3.6774 = 6.1290 < 7.9677] w=0.3779 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)W109.CB) [> 4.1222 = 6.8703 < 8.9314] w=0.3758 to align # Constraint # added constraint: constraint((T0325)G61.CA, (T0325)F116.CB) [> 4.3693 = 7.2822 < 9.4669] w=0.3736 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)D127.CB) [> 3.7516 = 6.2526 < 8.1284] w=0.3722 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)R231.CB) [> 3.4606 = 5.7676 < 7.4979] w=0.3701 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)E209.CB) [> 3.9458 = 6.5763 < 8.5492] w=0.3667 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)T33.CB) [> 3.9780 = 6.6300 < 8.6190] w=0.3656 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)I210.CB) [> 3.8086 = 6.3476 < 8.2519] w=0.3640 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)Q112.CB) [> 3.9251 = 6.5418 < 8.5043] w=0.3633 to align # Constraint # added constraint: constraint((T0325)T190.CB, (T0325)E242.CB) [> 3.8958 = 6.4929 < 8.4408] w=0.3626 to align # Constraint # added constraint: constraint((T0325)V132.CB, (T0325)N156.CB) [> 3.9790 = 6.6317 < 8.6212] w=0.3620 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)A37.CB) [> 3.9237 = 6.5395 < 8.5013] w=0.3571 to align # Constraint # added constraint: constraint((T0325)I24.CB, (T0325)S50.CB) [> 3.5779 = 5.9631 < 7.7521] w=0.3565 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)F208.CB) [> 4.1054 = 6.8424 < 8.8951] w=0.3564 to align # Constraint # added constraint: constraint((T0325)H129.CB, (T0325)N156.CB) [> 3.9958 = 6.6596 < 8.6575] w=0.3548 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)A51.CB) [> 3.3544 = 5.5907 < 7.2679] w=0.3507 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)V32.CB) [> 3.5065 = 5.8442 < 7.5975] w=0.3494 to align # Constraint # added constraint: constraint((T0325)M48.CB, (T0325)V62.CB) [> 3.9550 = 6.5916 < 8.5691] w=0.3489 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)E234.CB) [> 3.8116 = 6.3527 < 8.2585] w=0.3480 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)C212.CB) [> 3.3944 = 5.6573 < 7.3545] w=0.3456 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)S128.CB) [> 3.7865 = 6.3109 < 8.2041] w=0.3452 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)Q112.CB) [> 3.3012 = 5.5020 < 7.1526] w=0.3414 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)I23.CB) [> 4.0234 = 6.7057 < 8.7175] w=0.3384 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)P123.CB) [> 3.7407 = 6.2346 < 8.1049] w=0.3383 to align # Constraint # added constraint: constraint((T0325)P123.CB, (T0325)R155.CB) [> 3.8014 = 6.3357 < 8.2364] w=0.3382 to align # Constraint # added constraint: constraint((T0325)W109.CB, (T0325)L139.CB) [> 3.6520 = 6.0866 < 7.9126] w=0.3374 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)S54.CB) [> 4.1360 = 6.8932 < 8.9612] w=0.3369 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)I126.CB) [> 4.2126 = 7.0211 < 9.1274] w=0.3351 to align # Constraint # added constraint: constraint((T0325)V19.CB, (T0325)S50.CB) [> 4.2533 = 7.0887 < 9.2154] w=0.3351 to align # Constraint # added constraint: constraint((T0325)F208.CB, (T0325)L253.CB) [> 3.3671 = 5.6118 < 7.2953] w=0.3342 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)E234.CB) [> 3.3588 = 5.5980 < 7.2774] w=0.3333 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)T65.CB) [> 3.5373 = 5.8955 < 7.6641] w=0.3316 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)I210.CB) [> 4.1716 = 6.9527 < 9.0385] w=0.3308 to align # Constraint # added constraint: constraint((T0325)H129.CB, (T0325)A157.CB) [> 3.7379 = 6.2298 < 8.0988] w=0.3304 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)L38.CB) [> 4.0582 = 6.7636 < 8.7927] w=0.3295 to align # Constraint # added constraint: constraint((T0325)T20.CB, (T0325)A51.CB) [> 4.0472 = 6.7454 < 8.7690] w=0.3285 to align # Constraint # added constraint: constraint((T0325)S41.CB, (T0325)S115.CB) [> 3.6030 = 6.0050 < 7.8064] w=0.3284 to align # Constraint # added constraint: constraint((T0325)T35.CB, (T0325)H63.CB) [> 3.8037 = 6.3394 < 8.2413] w=0.3280 to align # Constraint # added constraint: constraint((T0325)T190.CB, (T0325)R233.CB) [> 3.2930 = 5.4883 < 7.1348] w=0.3253 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)A37.CB) [> 4.1410 = 6.9016 < 8.9721] w=0.3234 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)T36.CB) [> 3.7898 = 6.3163 < 8.2112] w=0.3227 to align # Constraint # added constraint: constraint((T0325)N131.CB, (T0325)A157.CB) [> 3.6564 = 6.0940 < 7.9222] w=0.3169 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)I60.CB) [> 4.0732 = 6.7887 < 8.8253] w=0.3154 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)D127.CB) [> 4.2235 = 7.0391 < 9.1508] w=0.3145 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)C212.CB) [> 3.9784 = 6.6306 < 8.6198] w=0.3077 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)D127.CB) [> 3.2749 = 5.4582 < 7.0957] w=0.3051 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)E209.CB) [> 3.4759 = 5.7932 < 7.5311] w=0.3046 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)A255.CB) [> 4.1937 = 6.9895 < 9.0864] w=0.3029 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)H125.CB) [> 3.7705 = 6.2841 < 8.1693] w=0.3023 to align # Constraint # added constraint: constraint((T0325)H27.CB, (T0325)P56.CB) [> 4.2049 = 7.0081 < 9.1105] w=0.3014 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)A59.CB) [> 3.7666 = 6.2777 < 8.1610] w=0.3012 to align # Constraint # added constraint: constraint((T0325)W109.CB, (T0325)Y150.CB) [> 4.0098 = 6.6830 < 8.6879] w=0.3008 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)I23.CB) [> 3.5859 = 5.9765 < 7.7695] w=0.2998 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)C212.CB) [> 3.8115 = 6.3526 < 8.2583] w=0.2990 to align # Constraint # added constraint: constraint((T0325)L194.CB, (T0325)R250.CB) [> 3.7152 = 6.1920 < 8.0496] w=0.2964 to align # Constraint # added constraint: constraint((T0325)H130.CB, (T0325)N156.CB) [> 3.8298 = 6.3829 < 8.2978] w=0.2957 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)C212.CB) [> 4.4497 = 7.4162 < 9.6411] w=0.2956 to align # Constraint # added constraint: constraint((T0325)A157.CB, (T0325)Y166.CB) [> 3.9399 = 6.5664 < 8.5363] w=0.2954 to align # Constraint # added constraint: constraint((T0325)I23.CB, (T0325)V32.CB) [> 3.6724 = 6.1207 < 7.9569] w=0.2946 to align # Constraint # added constraint: constraint((T0325)V235.CB, (T0325)K244.CB) [> 3.8358 = 6.3930 < 8.3110] w=0.2940 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)I210.CB) [> 3.8709 = 6.4514 < 8.3869] w=0.2932 to align # Constraint # added constraint: constraint((T0325)F208.CB, (T0325)I252.CB) [> 3.7709 = 6.2848 < 8.1703] w=0.2932 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T20.CB) [> 4.1818 = 6.9697 < 9.0606] w=0.2928 to align # Constraint # added constraint: constraint((T0325)V132.CB, (T0325)A157.CB) [> 3.9258 = 6.5430 < 8.5059] w=0.2911 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)S128.CB) [> 3.6464 = 6.0774 < 7.9006] w=0.2906 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)T65.CB) [> 3.9846 = 6.6409 < 8.6332] w=0.2906 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)I60.CB) [> 3.7822 = 6.3038 < 8.1949] w=0.2885 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)G61.CA) [> 3.6894 = 6.1490 < 7.9937] w=0.2882 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)L254.CB) [> 3.4666 = 5.7777 < 7.5111] w=0.2864 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)T36.CB) [> 3.8870 = 6.4784 < 8.4219] w=0.2863 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)F208.CB) [> 3.3218 = 5.5364 < 7.1973] w=0.2862 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)S128.CB) [> 3.5246 = 5.8743 < 7.6366] w=0.2857 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)L253.CB) [> 3.4928 = 5.8214 < 7.5678] w=0.2856 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)H129.CB) [> 3.5401 = 5.9001 < 7.6702] w=0.2845 to align # Constraint # added constraint: constraint((T0325)H27.CB, (T0325)T57.CB) [> 4.0107 = 6.6845 < 8.6899] w=0.2843 to align # Constraint # added constraint: constraint((T0325)V19.CB, (T0325)P214.CB) [> 3.3785 = 5.6308 < 7.3200] w=0.2806 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)A255.CB) [> 3.8644 = 6.4406 < 8.3728] w=0.2803 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)E209.CB) [> 3.7528 = 6.2547 < 8.1311] w=0.2801 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)H125.CB) [> 4.2378 = 7.0630 < 9.1819] w=0.2799 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)S34.CB) [> 3.9247 = 6.5412 < 8.5036] w=0.2790 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)H129.CB) [> 3.8953 = 6.4922 < 8.4399] w=0.2766 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)A255.CB) [> 3.4171 = 5.6951 < 7.4036] w=0.2752 to align # Constraint # added constraint: constraint((T0325)I24.CB, (T0325)A51.CB) [> 3.9397 = 6.5663 < 8.5361] w=0.2740 to align # Constraint # added constraint: constraint((T0325)R155.CB, (T0325)F208.CB) [> 3.6779 = 6.1299 < 7.9689] w=0.2738 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)V32.CB) [> 4.0350 = 6.7251 < 8.7426] w=0.2736 to align # Constraint # added constraint: constraint((T0325)S41.CB, (T0325)E108.CB) [> 3.5291 = 5.8818 < 7.6464] w=0.2733 to align # Constraint # added constraint: constraint((T0325)F44.CB, (T0325)S115.CB) [> 3.7804 = 6.3007 < 8.1909] w=0.2721 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)A255.CB) [> 3.5254 = 5.8756 < 7.6383] w=0.2704 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)H213.CB) [> 3.8246 = 6.3743 < 8.2866] w=0.2687 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)E206.CB) [> 3.9534 = 6.5890 < 8.5657] w=0.2684 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)L254.CB) [> 4.2973 = 7.1622 < 9.3108] w=0.2678 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)L66.CB) [> 3.4322 = 5.7204 < 7.4365] w=0.2667 to align # Constraint # added constraint: constraint((T0325)H130.CB, (T0325)A157.CB) [> 3.4754 = 5.7924 < 7.5301] w=0.2666 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)N211.CB) [> 3.4045 = 5.6741 < 7.3763] w=0.2665 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)A143.CB) [> 3.6693 = 6.1155 < 7.9502] w=0.2662 to align # Constraint # added constraint: constraint((T0325)K28.CB, (T0325)P56.CB) [> 3.5297 = 5.8828 < 7.6477] w=0.2658 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)I210.CB) [> 3.6371 = 6.0619 < 7.8804] w=0.2648 to align # Constraint # added constraint: constraint((T0325)N131.CB, (T0325)N156.CB) [> 4.1469 = 6.9115 < 8.9850] w=0.2632 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)H129.CB) [> 3.8439 = 6.4065 < 8.3284] w=0.2624 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)L253.CB) [> 3.0642 = 5.1070 < 6.6391] w=0.2621 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)L254.CB) [> 4.4324 = 7.3873 < 9.6035] w=0.2621 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)V207.CB) [> 3.2123 = 5.3538 < 6.9599] w=0.2620 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)I247.CB) [> 3.8073 = 6.3454 < 8.2491] w=0.2612 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)T67.CB) [> 4.0582 = 6.7637 < 8.7928] w=0.2609 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)L144.CB) [> 3.8700 = 6.4501 < 8.3851] w=0.2604 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)A246.CB) [> 3.6287 = 6.0479 < 7.8622] w=0.2600 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)L66.CB) [> 3.6471 = 6.0784 < 7.9020] w=0.2595 to align # Constraint # added constraint: constraint((T0325)F208.CB, (T0325)L254.CB) [> 3.8548 = 6.4247 < 8.3521] w=0.2584 to align # Constraint # added constraint: constraint((T0325)A26.CB, (T0325)L58.CB) [> 4.3115 = 7.1859 < 9.3417] w=0.2570 to align # Constraint # added constraint: constraint((T0325)V201.CB, (T0325)A246.CB) [> 3.6433 = 6.0722 < 7.8939] w=0.2566 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)L254.CB) [> 3.5813 = 5.9688 < 7.7595] w=0.2565 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)E108.CB) [> 3.8740 = 6.4567 < 8.3937] w=0.2556 to align # Constraint # added constraint: constraint((T0325)A157.CB, (T0325)E209.CB) [> 3.6953 = 6.1588 < 8.0064] w=0.2555 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)Q112.CB) [> 4.3066 = 7.1776 < 9.3309] w=0.2544 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)V105.CB) [> 4.2525 = 7.0875 < 9.2137] w=0.2538 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)S128.CB) [> 4.1657 = 6.9428 < 9.0257] w=0.2517 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)L146.CB) [> 3.5206 = 5.8677 < 7.6280] w=0.2509 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)A255.CB) [> 4.2190 = 7.0316 < 9.1411] w=0.2501 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)I252.CB) [> 3.6563 = 6.0939 < 7.9220] w=0.2492 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)N156.CB) [> 3.8639 = 6.4399 < 8.3718] w=0.2491 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)H125.CB) [> 3.9852 = 6.6419 < 8.6345] w=0.2488 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)L254.CB) [> 4.3758 = 7.2929 < 9.4808] w=0.2483 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)L254.CB) [> 3.9745 = 6.6241 < 8.6114] w=0.2475 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)A255.CB) [> 3.1525 = 5.2541 < 6.8303] w=0.2445 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)Q112.CB) [> 3.7078 = 6.1796 < 8.0335] w=0.2443 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)L253.CB) [> 4.4254 = 7.3756 < 9.5883] w=0.2437 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)I252.CB) [> 4.0159 = 6.6932 < 8.7012] w=0.2437 to align # Constraint # added constraint: constraint((T0325)F44.CB, (T0325)E108.CB) [> 2.7956 = 4.6594 < 6.0572] w=0.2411 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)T67.CB) [> 3.7662 = 6.2771 < 8.1602] w=0.2408 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)N211.CB) [> 4.1251 = 6.8752 < 8.9378] w=0.2407 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)V19.CB) [> 3.3758 = 5.6264 < 7.3143] w=0.2407 to align # Constraint # added constraint: constraint((T0325)I161.CB, (T0325)L196.CB) [> 3.5391 = 5.8985 < 7.6681] w=0.2392 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)P73.CB) [> 3.8458 = 6.4096 < 8.3325] w=0.2383 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L254.CB) [> 3.5398 = 5.8997 < 7.6696] w=0.2381 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)V207.CB) [> 4.4204 = 7.3673 < 9.5775] w=0.2381 to align # Constraint # added constraint: constraint((T0325)M117.CB, (T0325)A147.CB) [> 3.7620 = 6.2701 < 8.1511] w=0.2379 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)I210.CB) [> 4.1657 = 6.9429 < 9.0257] w=0.2372 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)V62.CB) [> 3.7852 = 6.3086 < 8.2012] w=0.2372 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)Q112.CB) [> 3.4505 = 5.7509 < 7.4761] w=0.2369 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)F208.CB) [> 3.4743 = 5.7905 < 7.5276] w=0.2365 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)A47.CB) [> 3.9074 = 6.5124 < 8.4661] w=0.2359 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)A47.CB) [> 3.7801 = 6.3002 < 8.1903] w=0.2354 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)P73.CB) [> 3.5626 = 5.9377 < 7.7190] w=0.2350 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)L38.CB) [> 3.3202 = 5.5337 < 7.1938] w=0.2348 to align # Constraint # added constraint: constraint((T0325)V201.CB, (T0325)R250.CB) [> 3.7092 = 6.1821 < 8.0367] w=0.2319 to align # Constraint # added constraint: constraint((T0325)V207.CB, (T0325)I252.CB) [> 3.7981 = 6.3302 < 8.2292] w=0.2314 to align # Constraint # added constraint: constraint((T0325)K5.CB, (T0325)A59.CB) [> 3.4912 = 5.8186 < 7.5642] w=0.2310 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)I210.CB) [> 4.0108 = 6.6846 < 8.6900] w=0.2310 to align # Constraint # added constraint: constraint((T0325)Q70.CB, (T0325)Q112.CB) [> 3.4067 = 5.6778 < 7.3811] w=0.2292 to align # Constraint # added constraint: constraint((T0325)T20.CB, (T0325)A55.CB) [> 3.6563 = 6.0938 < 7.9219] w=0.2290 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)L64.CB) [> 3.7281 = 6.2135 < 8.0776] w=0.2287 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)N211.CB) [> 3.8488 = 6.4146 < 8.3390] w=0.2281 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)E234.CB) [> 3.9112 = 6.5186 < 8.4742] w=0.2279 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)R231.CB) [> 3.8567 = 6.4279 < 8.3563] w=0.2277 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)L64.CB) [> 3.5907 = 5.9845 < 7.7799] w=0.2269 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)G61.CA) [> 3.5746 = 5.9577 < 7.7450] w=0.2264 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)A143.CB) [> 4.1746 = 6.9577 < 9.0450] w=0.2237 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)I237.CB) [> 3.1772 = 5.2953 < 6.8839] w=0.2231 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)F116.CB) [> 4.3172 = 7.1953 < 9.3539] w=0.2229 to align # Constraint # added constraint: constraint((T0325)V200.CB, (T0325)E209.CB) [> 3.6162 = 6.0270 < 7.8351] w=0.2225 to align # Constraint # added constraint: constraint((T0325)T20.CB, (T0325)T36.CB) [> 4.2606 = 7.1011 < 9.2314] w=0.2217 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)N211.CB) [> 4.0536 = 6.7561 < 8.7829] w=0.2204 to align # Constraint # added constraint: constraint((T0325)N131.CB, (T0325)S158.CB) [> 3.3809 = 5.6348 < 7.3252] w=0.2204 to align # Constraint # added constraint: constraint((T0325)V207.CB, (T0325)L253.CB) [> 3.5739 = 5.9565 < 7.7434] w=0.2193 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)A147.CB) [> 3.7764 = 6.2940 < 8.1822] w=0.2177 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)H130.CB) [> 3.8001 = 6.3335 < 8.2335] w=0.2177 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)A255.CB) [> 3.7800 = 6.2999 < 8.1899] w=0.2173 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)T65.CB) [> 3.5124 = 5.8540 < 7.6102] w=0.2168 to align # Constraint # added constraint: constraint((T0325)T16.CB, (T0325)T36.CB) [> 4.3199 = 7.1998 < 9.3597] w=0.2164 to align # Constraint # added constraint: constraint((T0325)G205.CA, (T0325)I252.CB) [> 4.1979 = 6.9964 < 9.0954] w=0.2156 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)T67.CB) [> 3.3918 = 5.6530 < 7.3489] w=0.2155 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)P214.CB) [> 2.7830 = 4.6383 < 6.0298] w=0.2152 to align # Constraint # added constraint: constraint((T0325)L167.CB, (T0325)M199.CB) [> 3.7954 = 6.3257 < 8.2235] w=0.2148 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)I247.CB) [> 3.9179 = 6.5299 < 8.4889] w=0.2144 to align # Constraint # added constraint: constraint((T0325)L140.CB, (T0325)M199.CB) [> 4.1234 = 6.8724 < 8.9341] w=0.2142 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)P81.CB) [> 3.4510 = 5.7517 < 7.4773] w=0.2137 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)I126.CB) [> 4.2735 = 7.1225 < 9.2593] w=0.2135 to align # Constraint # added constraint: constraint((T0325)A71.CB, (T0325)E108.CB) [> 3.9329 = 6.5548 < 8.5213] w=0.2132 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)I193.CB) [> 3.9294 = 6.5490 < 8.5137] w=0.2130 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)P39.CB) [> 3.4687 = 5.7812 < 7.5155] w=0.2120 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)E108.CB) [> 3.7209 = 6.2014 < 8.0619] w=0.2120 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)A71.CB) [> 3.9580 = 6.5966 < 8.5756] w=0.2116 to align # Constraint # added constraint: constraint((T0325)T16.CB, (T0325)A51.CB) [> 3.4009 = 5.6682 < 7.3686] w=0.2092 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)S50.CB) [> 4.1790 = 6.9651 < 9.0546] w=0.2092 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)T33.CB) [> 3.9957 = 6.6595 < 8.6573] w=0.2069 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)V207.CB) [> 4.0487 = 6.7478 < 8.7721] w=0.2063 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)E209.CB) [> 4.3564 = 7.2607 < 9.4389] w=0.2051 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)T67.CB) [> 3.5877 = 5.9795 < 7.7733] w=0.2051 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)R233.CB) [> 3.6922 = 6.1537 < 7.9998] w=0.2051 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)I210.CB) [> 3.5300 = 5.8833 < 7.6483] w=0.2048 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)L38.CB) [> 4.0258 = 6.7097 < 8.7226] w=0.2041 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)E108.CB) [> 2.9182 = 4.8637 < 6.3228] w=0.2040 to align # Constraint # added constraint: constraint((T0325)V32.CB, (T0325)A59.CB) [> 3.8971 = 6.4952 < 8.4438] w=0.2026 to align # Constraint # added constraint: constraint((T0325)L83.CB, (T0325)E108.CB) [> 4.0418 = 6.7363 < 8.7572] w=0.2008 to align # Constraint # added constraint: constraint((T0325)G30.CA, (T0325)K244.CB) [> 3.7291 = 6.2151 < 8.0797] w=0.1997 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)E108.CB) [> 3.9918 = 6.6530 < 8.6490] w=0.1971 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)I247.CB) [> 4.0862 = 6.8103 < 8.8534] w=0.1960 to align # Constraint # added constraint: constraint((T0325)V200.CB, (T0325)V243.CB) [> 4.1192 = 6.8654 < 8.9250] w=0.1958 to align # Constraint # added constraint: constraint((T0325)H130.CB, (T0325)L139.CB) [> 3.7416 = 6.2360 < 8.1068] w=0.1954 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)P230.CB) [> 3.3214 = 5.5356 < 7.1963] w=0.1952 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)A71.CB) [> 4.1535 = 6.9226 < 8.9993] w=0.1940 to align # Constraint # added constraint: constraint((T0325)L102.CB, (T0325)A145.CB) [> 3.9491 = 6.5819 < 8.5564] w=0.1934 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)I193.CB) [> 3.2986 = 5.4977 < 7.1470] w=0.1931 to align # Constraint # added constraint: constraint((T0325)E46.CB, (T0325)S119.CB) [> 4.5756 = 7.6260 < 9.9138] w=0.1920 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)N211.CB) [> 3.6744 = 6.1240 < 7.9613] w=0.1904 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)L139.CB) [> 3.3046 = 5.5077 < 7.1600] w=0.1901 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)C212.CB) [> 3.6198 = 6.0329 < 7.8428] w=0.1900 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)L253.CB) [> 3.9151 = 6.5252 < 8.4827] w=0.1895 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)I252.CB) [> 2.9733 = 4.9555 < 6.4421] w=0.1895 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)I193.CB) [> 3.7673 = 6.2788 < 8.1625] w=0.1863 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)A47.CB) [> 3.3834 = 5.6390 < 7.3307] w=0.1859 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)V80.CB) [> 3.8894 = 6.4823 < 8.4270] w=0.1859 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)N256.CB) [> 3.6846 = 6.1411 < 7.9834] w=0.1856 to align # Constraint # added constraint: constraint((T0325)F183.CB, (T0325)C212.CB) [> 3.7503 = 6.2506 < 8.1257] w=0.1856 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)G205.CA) [> 4.1350 = 6.8917 < 8.9592] w=0.1852 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)I74.CB) [> 4.1472 = 6.9120 < 8.9856] w=0.1851 to align # Constraint # added constraint: constraint((T0325)F216.CB, (T0325)Y227.CB) [> 3.9516 = 6.5861 < 8.5619] w=0.1847 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)R231.CB) [> 3.5289 = 5.8816 < 7.6460] w=0.1844 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)H213.CB) [> 3.7476 = 6.2460 < 8.1198] w=0.1839 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)N211.CB) [> 3.9878 = 6.6464 < 8.6403] w=0.1837 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)I60.CB) [> 3.6158 = 6.0264 < 7.8343] w=0.1826 to align # Constraint # added constraint: constraint((T0325)H129.CB, (T0325)L139.CB) [> 3.5473 = 5.9121 < 7.6858] w=0.1823 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T67.CB) [> 3.4600 = 5.7666 < 7.4966] w=0.1817 to align # Constraint # added constraint: constraint((T0325)L83.CB, (T0325)E104.CB) [> 3.8076 = 6.3460 < 8.2498] w=0.1813 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)R159.CB) [> 3.8393 = 6.3988 < 8.3185] w=0.1807 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)D185.CB) [> 3.9659 = 6.6098 < 8.5928] w=0.1801 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)E209.CB) [> 3.4495 = 5.7492 < 7.4740] w=0.1800 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)H63.CB) [> 4.5211 = 7.5352 < 9.7957] w=0.1796 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)E234.CB) [> 4.0257 = 6.7094 < 8.7223] w=0.1790 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)I126.CB) [> 3.8296 = 6.3827 < 8.2975] w=0.1786 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)R231.CB) [> 3.7021 = 6.1702 < 8.0212] w=0.1778 to align # Constraint # added constraint: constraint((T0325)F208.CB, (T0325)A255.CB) [> 3.8761 = 6.4602 < 8.3983] w=0.1775 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)H129.CB) [> 3.8449 = 6.4081 < 8.3305] w=0.1773 to align # Constraint # added constraint: constraint((T0325)I74.CB, (T0325)W91.CB) [> 3.8684 = 6.4473 < 8.3815] w=0.1755 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)H213.CB) [> 3.6105 = 6.0174 < 7.8227] w=0.1753 to align # Constraint # added constraint: constraint((T0325)L167.CB, (T0325)L196.CB) [> 3.6790 = 6.1317 < 7.9712] w=0.1748 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)L139.CB) [> 4.2341 = 7.0568 < 9.1739] w=0.1746 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)Y184.CB) [> 3.4074 = 5.6789 < 7.3826] w=0.1741 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)A59.CB) [> 4.3651 = 7.2752 < 9.4578] w=0.1734 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)Y257.CB) [> 3.6422 = 6.0703 < 7.8914] w=0.1732 to align # Constraint # added constraint: constraint((T0325)T175.CB, (T0325)I210.CB) [> 3.6270 = 6.0450 < 7.8584] w=0.1727 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)Y257.CB) [> 3.7903 = 6.3172 < 8.2124] w=0.1723 to align # Constraint # added constraint: constraint((T0325)F183.CB, (T0325)I193.CB) [> 3.7931 = 6.3218 < 8.2183] w=0.1719 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)P81.CB) [> 3.8903 = 6.4838 < 8.4290] w=0.1719 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)A255.CB) [> 3.9842 = 6.6403 < 8.6324] w=0.1712 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)T65.CB) [> 3.6083 = 6.0139 < 7.8180] w=0.1711 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)L66.CB) [> 3.0700 = 5.1167 < 6.6517] w=0.1708 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)M79.CB) [> 3.5296 = 5.8826 < 7.6474] w=0.1707 to align # Constraint # added constraint: constraint((T0325)H129.CB, (T0325)S158.CB) [> 3.6582 = 6.0971 < 7.9262] w=0.1705 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)L75.CB) [> 3.7504 = 6.2506 < 8.1258] w=0.1700 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)V32.CB) [> 3.2076 = 5.3460 < 6.9498] w=0.1696 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)V105.CB) [> 4.0805 = 6.8008 < 8.8410] w=0.1692 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)V173.CB) [> 3.5456 = 5.9094 < 7.6822] w=0.1692 to align # Constraint # added constraint: constraint((T0325)T175.CB, (T0325)N211.CB) [> 3.7583 = 6.2639 < 8.1431] w=0.1692 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)A37.CB) [> 3.9066 = 6.5111 < 8.4644] w=0.1685 to align # Constraint # added constraint: constraint((T0325)T16.CB, (T0325)P214.CB) [> 4.2294 = 7.0490 < 9.1638] w=0.1680 to align # Constraint # added constraint: constraint((T0325)K135.CB, (T0325)F183.CB) [> 3.8090 = 6.3484 < 8.2529] w=0.1676 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)G251.CA) [> 3.5306 = 5.8844 < 7.6497] w=0.1673 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)D127.CB) [> 4.1037 = 6.8394 < 8.8913] w=0.1672 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)Y43.CB) [> 3.3306 = 5.5511 < 7.2164] w=0.1667 to align # Constraint # added constraint: constraint((T0325)T219.CB, (T0325)R231.CB) [> 3.7113 = 6.1856 < 8.0412] w=0.1664 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)L64.CB) [> 4.1809 = 6.9681 < 9.0585] w=0.1648 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)N256.CB) [> 3.7978 = 6.3296 < 8.2285] w=0.1642 to align # Constraint # added constraint: constraint((T0325)S160.CB, (T0325)L196.CB) [> 3.7681 = 6.2802 < 8.1642] w=0.1638 to align # Constraint # added constraint: constraint((T0325)N131.CB, (T0325)R159.CB) [> 3.4348 = 5.7247 < 7.4421] w=0.1638 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)K138.CB) [> 3.5960 = 5.9933 < 7.7912] w=0.1637 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)R231.CB) [> 4.0733 = 6.7888 < 8.8254] w=0.1633 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)N211.CB) [> 3.8498 = 6.4164 < 8.3413] w=0.1629 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)V100.CB) [> 3.3890 = 5.6483 < 7.3428] w=0.1621 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)I232.CB) [> 3.3457 = 5.5762 < 7.2490] w=0.1620 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)D127.CB) [> 3.7468 = 6.2446 < 8.1180] w=0.1620 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)N256.CB) [> 2.7876 = 4.6460 < 6.0398] w=0.1618 to align # Constraint # added constraint: constraint((T0325)H130.CB, (T0325)S158.CB) [> 3.7918 = 6.3196 < 8.2155] w=0.1615 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)V100.CB) [> 3.5486 = 5.9143 < 7.6885] w=0.1611 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)C212.CB) [> 4.0940 = 6.8233 < 8.8703] w=0.1611 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)T36.CB) [> 4.1023 = 6.8371 < 8.8882] w=0.1611 to align # Constraint # added constraint: constraint((T0325)A26.CB, (T0325)T35.CB) [> 3.9708 = 6.6181 < 8.6035] w=0.1607 to align # Constraint # added constraint: constraint((T0325)H133.CB, (T0325)S160.CB) [> 3.9254 = 6.5424 < 8.5051] w=0.1606 to align # Constraint # added constraint: constraint((T0325)Y184.CB, (T0325)I193.CB) [> 3.7446 = 6.2409 < 8.1132] w=0.1604 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)L38.CB) [> 3.8135 = 6.3559 < 8.2627] w=0.1595 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)V207.CB) [> 3.1081 = 5.1802 < 6.7343] w=0.1594 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)N211.CB) [> 3.7132 = 6.1887 < 8.0453] w=0.1586 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)A37.CB) [> 3.6982 = 6.1637 < 8.0128] w=0.1583 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)V105.CB) [> 4.1096 = 6.8493 < 8.9041] w=0.1582 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)V31.CB) [> 4.1300 = 6.8833 < 8.9483] w=0.1582 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)S203.CB) [> 3.6937 = 6.1561 < 8.0030] w=0.1580 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)A59.CB) [> 3.7220 = 6.2034 < 8.0644] w=0.1579 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)Y43.CB) [> 3.9436 = 6.5726 < 8.5444] w=0.1578 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)K72.CB) [> 3.4085 = 5.6808 < 7.3850] w=0.1576 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)F44.CB) [> 2.7350 = 4.5583 < 5.9258] w=0.1575 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)P230.CB) [> 3.5055 = 5.8425 < 7.5952] w=0.1573 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)N256.CB) [> 3.9708 = 6.6180 < 8.6033] w=0.1569 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)A47.CB) [> 3.9273 = 6.5455 < 8.5092] w=0.1563 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)N256.CB) [> 2.6700 = 4.4501 < 5.7851] w=0.1562 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)F183.CB) [> 3.8740 = 6.4566 < 8.3937] w=0.1546 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)L38.CB) [> 4.0089 = 6.6814 < 8.6859] w=0.1538 to align # Constraint # added constraint: constraint((T0325)L140.CB, (T0325)V207.CB) [> 3.2841 = 5.4736 < 7.1157] w=0.1534 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)D127.CB) [> 3.5227 = 5.8712 < 7.6325] w=0.1531 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)N211.CB) [> 3.7517 = 6.2529 < 8.1288] w=0.1528 to align # Constraint # added constraint: constraint((T0325)D11.CB, (T0325)H63.CB) [> 3.5595 = 5.9325 < 7.7122] w=0.1519 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)L66.CB) [> 3.8634 = 6.4390 < 8.3707] w=0.1518 to align # Constraint # added constraint: constraint((T0325)N3.CB, (T0325)E206.CB) [> 4.0438 = 6.7397 < 8.7617] w=0.1516 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)T65.CB) [> 3.9631 = 6.6052 < 8.5868] w=0.1501 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)L38.CB) [> 3.5893 = 5.9822 < 7.7768] w=0.1495 to align # Constraint # added constraint: constraint((T0325)E162.CB, (T0325)I188.CB) [> 3.3583 = 5.5971 < 7.2762] w=0.1482 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)C212.CB) [> 3.3450 = 5.5750 < 7.2475] w=0.1482 to align # Constraint # added constraint: constraint((T0325)K4.CB, (T0325)G205.CA) [> 3.3431 = 5.5718 < 7.2433] w=0.1477 to align # Constraint # added constraint: constraint((T0325)I74.CB, (T0325)F90.CB) [> 3.4997 = 5.8328 < 7.5827] w=0.1474 to align # Constraint # added constraint: constraint((T0325)R233.CB, (T0325)E242.CB) [> 3.6999 = 6.1665 < 8.0164] w=0.1470 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)P39.CB) [> 4.3889 = 7.3148 < 9.5093] w=0.1468 to align # Constraint # added constraint: constraint((T0325)H133.CB, (T0325)Y166.CB) [> 3.8380 = 6.3967 < 8.3157] w=0.1465 to align # Constraint # added constraint: constraint((T0325)F183.CB, (T0325)P214.CB) [> 3.8455 = 6.4092 < 8.3320] w=0.1459 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)L196.CB) [> 4.0243 = 6.7071 < 8.7193] w=0.1458 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)I60.CB) [> 4.0406 = 6.7343 < 8.7546] w=0.1457 to align # Constraint # added constraint: constraint((T0325)S82.CB, (T0325)N136.CB) [> 3.9118 = 6.5198 < 8.4757] w=0.1451 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)V62.CB) [> 4.0064 = 6.6774 < 8.6806] w=0.1445 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)T40.CB) [> 2.9332 = 4.8887 < 6.3554] w=0.1445 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)L75.CB) [> 3.6417 = 6.0695 < 7.8904] w=0.1442 to align # Constraint # added constraint: constraint((T0325)R174.CB, (T0325)I210.CB) [> 4.0180 = 6.6967 < 8.7057] w=0.1441 to align # Constraint # added constraint: constraint((T0325)F216.CB, (T0325)G226.CA) [> 3.4513 = 5.7521 < 7.4778] w=0.1439 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)W91.CB) [> 3.0610 = 5.1017 < 6.6323] w=0.1437 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)P214.CB) [> 3.3605 = 5.6008 < 7.2810] w=0.1436 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)L146.CB) [> 4.0705 = 6.7842 < 8.8195] w=0.1434 to align # Constraint # added constraint: constraint((T0325)I217.CB, (T0325)V243.CB) [> 3.6255 = 6.0426 < 7.8553] w=0.1432 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)L64.CB) [> 3.6642 = 6.1071 < 7.9392] w=0.1432 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)N211.CB) [> 4.2406 = 7.0677 < 9.1880] w=0.1431 to align # Constraint # added constraint: constraint((T0325)L83.CB, (T0325)V100.CB) [> 3.7530 = 6.2550 < 8.1315] w=0.1428 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)Y257.CB) [> 3.6045 = 6.0076 < 7.8099] w=0.1424 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)H213.CB) [> 3.7276 = 6.2127 < 8.0766] w=0.1422 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)C212.CB) [> 3.9894 = 6.6491 < 8.6438] w=0.1419 to align # Constraint # added constraint: constraint((T0325)S41.CB, (T0325)A71.CB) [> 3.6843 = 6.1404 < 7.9826] w=0.1419 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)P214.CB) [> 4.0437 = 6.7396 < 8.7614] w=0.1415 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)I126.CB) [> 4.5806 = 7.6342 < 9.9245] w=0.1413 to align # Constraint # added constraint: constraint((T0325)T175.CB, (T0325)C212.CB) [> 3.4549 = 5.7582 < 7.4857] w=0.1411 to align # Constraint # added constraint: constraint((T0325)F216.CB, (T0325)C228.CB) [> 3.3065 = 5.5108 < 7.1641] w=0.1405 to align # Constraint # added constraint: constraint((T0325)Q21.CB, (T0325)S50.CB) [> 4.6497 = 7.7496 < 10.0744] w=0.1403 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)L83.CB) [> 4.1222 = 6.8704 < 8.9315] w=0.1400 to align # Constraint # added constraint: constraint((T0325)A26.CB, (T0325)I232.CB) [> 3.7869 = 6.3115 < 8.2050] w=0.1399 to align # Constraint # added constraint: constraint((T0325)K137.CB, (T0325)L169.CB) [> 3.6427 = 6.0711 < 7.8925] w=0.1389 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)H213.CB) [> 4.0858 = 6.8098 < 8.8527] w=0.1389 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)E108.CB) [> 4.0086 = 6.6809 < 8.6852] w=0.1385 to align # Constraint # added constraint: constraint((T0325)R174.CB, (T0325)L196.CB) [> 4.0110 = 6.6849 < 8.6904] w=0.1384 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)T36.CB) [> 3.7057 = 6.1761 < 8.0289] w=0.1383 to align # Constraint # added constraint: constraint((T0325)V132.CB, (T0325)R159.CB) [> 4.2216 = 7.0360 < 9.1468] w=0.1382 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)T36.CB) [> 3.8507 = 6.4179 < 8.3433] w=0.1379 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)V105.CB) [> 3.6299 = 6.0498 < 7.8648] w=0.1376 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)D127.CB) [> 2.6212 = 4.3688 < 5.6794] w=0.1376 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)A37.CB) [> 3.4790 = 5.7983 < 7.5378] w=0.1372 to align # Constraint # added constraint: constraint((T0325)A26.CB, (T0325)V235.CB) [> 3.3796 = 5.6326 < 7.3224] w=0.1371 to align # Constraint # added constraint: constraint((T0325)P176.CB, (T0325)I193.CB) [> 4.0334 = 6.7224 < 8.7391] w=0.1368 to align # Constraint # added constraint: constraint((T0325)Y184.CB, (T0325)L196.CB) [> 4.1632 = 6.9387 < 9.0203] w=0.1366 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)T67.CB) [> 3.8393 = 6.3988 < 8.3184] w=0.1363 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)A246.CB) [> 4.1893 = 6.9822 < 9.0768] w=0.1362 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)P214.CB) [> 4.0636 = 6.7726 < 8.8044] w=0.1361 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)P76.CB) [> 3.9548 = 6.5914 < 8.5688] w=0.1358 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)N136.CB) [> 3.6860 = 6.1433 < 7.9863] w=0.1357 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)H130.CB) [> 4.2031 = 7.0052 < 9.1068] w=0.1356 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)Y257.CB) [> 3.5560 = 5.9266 < 7.7046] w=0.1355 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)H213.CB) [> 3.3284 = 5.5474 < 7.2116] w=0.1354 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)Y257.CB) [> 4.2806 = 7.1343 < 9.2745] w=0.1350 to align # Constraint # added constraint: constraint((T0325)L167.CB, (T0325)V200.CB) [> 4.3949 = 7.3249 < 9.5224] w=0.1350 to align # Constraint # added constraint: constraint((T0325)R174.CB, (T0325)F208.CB) [> 3.7649 = 6.2748 < 8.1573] w=0.1346 to align # Constraint # added constraint: constraint((T0325)G141.CA, (T0325)S203.CB) [> 2.8281 = 4.7134 < 6.1275] w=0.1330 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)L144.CB) [> 3.9940 = 6.6567 < 8.6537] w=0.1330 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)A111.CB) [> 4.3940 = 7.3234 < 9.5204] w=0.1313 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)L196.CB) [> 3.8805 = 6.4675 < 8.4077] w=0.1310 to align # Constraint # added constraint: constraint((T0325)T163.CB, (T0325)L196.CB) [> 3.1617 = 5.2694 < 6.8503] w=0.1310 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)R250.CB) [> 4.1488 = 6.9147 < 8.9891] w=0.1309 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)E209.CB) [> 3.2116 = 5.3526 < 6.9584] w=0.1307 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)H213.CB) [> 3.6788 = 6.1313 < 7.9707] w=0.1303 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)Y257.CB) [> 3.7981 = 6.3302 < 8.2292] w=0.1300 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)N131.CB) [> 3.6351 = 6.0586 < 7.8762] w=0.1300 to align # Constraint # added constraint: constraint((T0325)S82.CB, (T0325)N101.CB) [> 3.9274 = 6.5457 < 8.5093] w=0.1299 to align # Constraint # added constraint: constraint((T0325)F183.CB, (T0325)V243.CB) [> 4.0926 = 6.8210 < 8.8673] w=0.1295 to align # Constraint # added constraint: constraint((T0325)P176.CB, (T0325)L196.CB) [> 3.8673 = 6.4455 < 8.3791] w=0.1292 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)S41.CB) [> 4.1906 = 6.9843 < 9.0796] w=0.1283 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)A47.CB) [> 3.9619 = 6.6032 < 8.5842] w=0.1274 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)Y257.CB) [> 3.3051 = 5.5086 < 7.1611] w=0.1268 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)P73.CB) [> 4.2615 = 7.1025 < 9.2333] w=0.1245 to align # Constraint # added constraint: constraint((T0325)V173.CB, (T0325)I210.CB) [> 3.1605 = 5.2674 < 6.8477] w=0.1241 to align # Constraint # added constraint: constraint((T0325)L140.CB, (T0325)S203.CB) [> 2.6746 = 4.4577 < 5.7950] w=0.1238 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)I126.CB) [> 3.5515 = 5.9192 < 7.6949] w=0.1222 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)I126.CB) [> 4.0816 = 6.8027 < 8.8435] w=0.1222 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)P123.CB) [> 3.4191 = 5.6985 < 7.4080] w=0.1222 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)P123.CB) [> 3.5549 = 5.9248 < 7.7022] w=0.1222 to align # Constraint # added constraint: constraint((T0325)I74.CB, (T0325)H129.CB) [> 3.7242 = 6.2070 < 8.0691] w=0.1221 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)T36.CB) [> 4.2376 = 7.0626 < 9.1814] w=0.1216 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)L66.CB) [> 3.5662 = 5.9436 < 7.7267] w=0.1209 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)L66.CB) [> 4.1481 = 6.9135 < 8.9875] w=0.1208 to align # Constraint # added constraint: constraint((T0325)Y15.CB, (T0325)T40.CB) [> 3.8270 = 6.3783 < 8.2917] w=0.1206 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)V142.CB) [> 4.2285 = 7.0475 < 9.1617] w=0.1200 to align # Constraint # added constraint: constraint((T0325)L154.CB, (T0325)T175.CB) [> 3.6523 = 6.0872 < 7.9134] w=0.1188 to align # Constraint # added constraint: constraint((T0325)Y184.CB, (T0325)P214.CB) [> 3.9454 = 6.5756 < 8.5483] w=0.1185 to align # Constraint # added constraint: constraint((T0325)I217.CB, (T0325)M229.CB) [> 3.7499 = 6.2499 < 8.1248] w=0.1184 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)Q182.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.1183 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)P39.CB) [> 3.7848 = 6.3080 < 8.2004] w=0.1179 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)V105.CB) [> 3.3545 = 5.5908 < 7.2680] w=0.1171 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)P214.CB) [> 4.2301 = 7.0501 < 9.1652] w=0.1168 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)H92.CB) [> 4.1210 = 6.8682 < 8.9287] w=0.1166 to align # Constraint # added constraint: constraint((T0325)T175.CB, (T0325)I193.CB) [> 3.2669 = 5.4449 < 7.0784] w=0.1163 to align # Constraint # added constraint: constraint((T0325)F208.CB, (T0325)R250.CB) [> 3.9031 = 6.5051 < 8.4567] w=0.1157 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)K72.CB) [> 3.9967 = 6.6611 < 8.6595] w=0.1154 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)V105.CB) [> 4.0903 = 6.8171 < 8.8622] w=0.1150 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)A47.CB) [> 3.8884 = 6.4806 < 8.4249] w=0.1150 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)V132.CB) [> 4.2833 = 7.1388 < 9.2804] w=0.1149 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)V132.CB) [> 4.2540 = 7.0899 < 9.2169] w=0.1145 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)Y166.CB) [> 3.7510 = 6.2517 < 8.1272] w=0.1143 to align # Constraint # added constraint: constraint((T0325)K72.CB, (T0325)H92.CB) [> 4.1330 = 6.8884 < 8.9549] w=0.1139 to align # Constraint # added constraint: constraint((T0325)P176.CB, (T0325)N211.CB) [> 3.8188 = 6.3646 < 8.2740] w=0.1139 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)V132.CB) [> 3.7591 = 6.2652 < 8.1447] w=0.1135 to align # Constraint # added constraint: constraint((T0325)P17.CB, (T0325)Y43.CB) [> 4.0748 = 6.7914 < 8.8288] w=0.1135 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)T192.CB) [> 3.4781 = 5.7968 < 7.5358] w=0.1122 to align # Constraint # added constraint: constraint((T0325)V173.CB, (T0325)N211.CB) [> 3.8706 = 6.4510 < 8.3863] w=0.1120 to align # Constraint # added constraint: constraint((T0325)I220.CB, (T0325)R233.CB) [> 3.7302 = 6.2169 < 8.0820] w=0.1116 to align # Constraint # added constraint: constraint((T0325)V173.CB, (T0325)V207.CB) [> 3.7625 = 6.2708 < 8.1520] w=0.1116 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)E209.CB) [> 4.2695 = 7.1158 < 9.2506] w=0.1115 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T65.CB) [> 3.7444 = 6.2407 < 8.1130] w=0.1114 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)T65.CB) [> 3.6267 = 6.0444 < 7.8578] w=0.1114 to align # Constraint # added constraint: constraint((T0325)N3.CB, (T0325)V31.CB) [> 4.1863 = 6.9771 < 9.0702] w=0.1113 to align # Constraint # added constraint: constraint((T0325)V31.CB, (T0325)L58.CB) [> 4.0454 = 6.7424 < 8.7651] w=0.1113 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)I210.CB) [> 3.5438 = 5.9064 < 7.6783] w=0.1112 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)E234.CB) [> 3.5802 = 5.9670 < 7.7571] w=0.1108 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)P214.CB) [> 3.8671 = 6.4451 < 8.3786] w=0.1103 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)E209.CB) [> 3.8821 = 6.4702 < 8.4113] w=0.1095 to align # Constraint # added constraint: constraint((T0325)T163.CB, (T0325)I217.CB) [> 3.4057 = 5.6761 < 7.3789] w=0.1095 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)I193.CB) [> 3.8647 = 6.4412 < 8.3735] w=0.1092 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)V62.CB) [> 4.2913 = 7.1522 < 9.2978] w=0.1086 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)Y257.CB) [> 3.8411 = 6.4018 < 8.3223] w=0.1084 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)E209.CB) [> 4.0761 = 6.7935 < 8.8316] w=0.1084 to align # Constraint # added constraint: constraint((T0325)I161.CB, (T0325)I193.CB) [> 3.2679 = 5.4465 < 7.0805] w=0.1084 to align # Constraint # added constraint: constraint((T0325)I74.CB, (T0325)N131.CB) [> 3.6377 = 6.0629 < 7.8817] w=0.1081 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)M229.CB) [> 4.0781 = 6.7969 < 8.8360] w=0.1081 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)V62.CB) [> 4.3559 = 7.2598 < 9.4377] w=0.1078 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)E204.CB) [> 4.0615 = 6.7692 < 8.8000] w=0.1078 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)H63.CB) [> 4.3797 = 7.2994 < 9.4893] w=0.1074 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)S128.CB) [> 4.2686 = 7.1143 < 9.2486] w=0.1073 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)Y257.CB) [> 3.8229 = 6.3715 < 8.2829] w=0.1073 to align # Constraint # added constraint: constraint((T0325)S50.CB, (T0325)I60.CB) [> 4.0465 = 6.7442 < 8.7674] w=0.1073 to align # Constraint # added constraint: constraint((T0325)V19.CB, (T0325)M229.CB) [> 4.0471 = 6.7452 < 8.7688] w=0.1073 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)I193.CB) [> 3.8184 = 6.3640 < 8.2732] w=0.1069 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)H63.CB) [> 3.4950 = 5.8250 < 7.5725] w=0.1067 to align # Constraint # added constraint: constraint((T0325)I161.CB, (T0325)I188.CB) [> 3.6130 = 6.0217 < 7.8283] w=0.1064 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)L38.CB) [> 3.4170 = 5.6950 < 7.4035] w=0.1062 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)V235.CB) [> 3.2224 = 5.3707 < 6.9819] w=0.1061 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)Y43.CB) [> 3.4946 = 5.8244 < 7.5717] w=0.1057 to align # Constraint # added constraint: constraint((T0325)Y166.CB, (T0325)L196.CB) [> 3.9187 = 6.5311 < 8.4905] w=0.1055 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)H130.CB) [> 3.5041 = 5.8402 < 7.5923] w=0.1053 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)C228.CB) [> 3.6750 = 6.1249 < 7.9624] w=0.1052 to align # Constraint # added constraint: constraint((T0325)P176.CB, (T0325)T192.CB) [> 4.2499 = 7.0833 < 9.2082] w=0.1044 to align # Constraint # added constraint: constraint((T0325)K72.CB, (T0325)F90.CB) [> 4.0880 = 6.8133 < 8.8573] w=0.1037 to align # Constraint # added constraint: constraint((T0325)L68.CB, (T0325)H129.CB) [> 3.7535 = 6.2559 < 8.1326] w=0.1035 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)E108.CB) [> 4.3580 = 7.2634 < 9.4424] w=0.1034 to align # Constraint # added constraint: constraint((T0325)Y184.CB, (T0325)I217.CB) [> 3.7323 = 6.2205 < 8.0866] w=0.1032 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)S128.CB) [> 4.1680 = 6.9467 < 9.0307] w=0.1028 to align # Constraint # added constraint: constraint((T0325)H133.CB, (T0325)Y170.CB) [> 3.7838 = 6.3064 < 8.1983] w=0.1027 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)V62.CB) [> 3.0164 = 5.0274 < 6.5356] w=0.1025 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)I60.CB) [> 3.1537 = 5.2561 < 6.8329] w=0.1025 to align # Constraint # added constraint: constraint((T0325)L154.CB, (T0325)M179.CB) [> 3.9374 = 6.5624 < 8.5311] w=0.1022 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)V62.CB) [> 3.7866 = 6.3109 < 8.2042] w=0.1021 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)P230.CB) [> 3.4880 = 5.8134 < 7.5574] w=0.1020 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)L169.CB) [> 4.0437 = 6.7395 < 8.7613] w=0.0997 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)V62.CB) [> 4.2197 = 7.0328 < 9.1427] w=0.0995 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)S128.CB) [> 3.4753 = 5.7922 < 7.5299] w=0.0992 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)E209.CB) [> 3.3818 = 5.6364 < 7.3273] w=0.0990 to align # Constraint # added constraint: constraint((T0325)V32.CB, (T0325)A255.CB) [> 3.9187 = 6.5311 < 8.4905] w=0.0989 to align # Constraint # added constraint: constraint((T0325)V32.CB, (T0325)E248.CB) [> 4.4466 = 7.4110 < 9.6343] w=0.0989 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)I188.CB) [> 3.7799 = 6.2999 < 8.1898] w=0.0989 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)V200.CB) [> 2.7057 = 4.5095 < 5.8624] w=0.0981 to align # Constraint # added constraint: constraint((T0325)T16.CB, (T0325)A47.CB) [> 3.8684 = 6.4474 < 8.3816] w=0.0975 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)I126.CB) [> 4.2289 = 7.0482 < 9.1626] w=0.0974 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T65.CB) [> 3.3877 = 5.6461 < 7.3399] w=0.0973 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)L66.CB) [> 4.2470 = 7.0783 < 9.2018] w=0.0973 to align # Constraint # added constraint: constraint((T0325)I74.CB, (T0325)H130.CB) [> 4.1392 = 6.8986 < 8.9682] w=0.0968 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)P73.CB) [> 3.9905 = 6.6509 < 8.6461] w=0.0965 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)A255.CB) [> 3.3709 = 5.6182 < 7.3037] w=0.0964 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)I210.CB) [> 3.9147 = 6.5245 < 8.4818] w=0.0963 to align # Constraint # added constraint: constraint((T0325)L68.CB, (T0325)N131.CB) [> 3.4515 = 5.7525 < 7.4782] w=0.0960 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)E108.CB) [> 3.7230 = 6.2051 < 8.0666] w=0.0956 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)V200.CB) [> 4.1201 = 6.8668 < 8.9268] w=0.0955 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)R159.CB) [> 4.0764 = 6.7939 < 8.8321] w=0.0951 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)T40.CB) [> 4.0779 = 6.7965 < 8.8354] w=0.0949 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)E234.CB) [> 3.7228 = 6.2047 < 8.0661] w=0.0945 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)I210.CB) [> 3.8678 = 6.4463 < 8.3802] w=0.0941 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)E209.CB) [> 3.6006 = 6.0010 < 7.8013] w=0.0936 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)H63.CB) [> 3.6527 = 6.0878 < 7.9142] w=0.0935 to align # Constraint # added constraint: constraint((T0325)P76.CB, (T0325)H130.CB) [> 3.8176 = 6.3627 < 8.2715] w=0.0929 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)P230.CB) [> 3.4311 = 5.7185 < 7.4341] w=0.0926 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)M229.CB) [> 3.2364 = 5.3939 < 7.0121] w=0.0924 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)V80.CB) [> 3.5030 = 5.8383 < 7.5898] w=0.0921 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T33.CB) [> 3.8029 = 6.3382 < 8.2396] w=0.0917 to align # Constraint # added constraint: constraint((T0325)V173.CB, (T0325)L196.CB) [> 4.1493 = 6.9156 < 8.9902] w=0.0916 to align # Constraint # added constraint: constraint((T0325)T163.CB, (T0325)Q195.CB) [> 3.5993 = 5.9988 < 7.7985] w=0.0910 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)L196.CB) [> 3.3217 = 5.5362 < 7.1970] w=0.0906 to align # Constraint # added constraint: constraint((T0325)V132.CB, (T0325)L196.CB) [> 4.2822 = 7.1370 < 9.2781] w=0.0905 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)N211.CB) [> 3.5573 = 5.9289 < 7.7076] w=0.0904 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)C212.CB) [> 4.0601 = 6.7669 < 8.7969] w=0.0903 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)L75.CB) [> 4.1077 = 6.8463 < 8.9001] w=0.0902 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)G226.CA) [> 3.2964 = 5.4939 < 7.1421] w=0.0901 to align # Constraint # added constraint: constraint((T0325)N69.CB, (T0325)N131.CB) [> 4.2921 = 7.1535 < 9.2995] w=0.0901 to align # Constraint # added constraint: constraint((T0325)N3.CB, (T0325)V32.CB) [> 4.1991 = 6.9984 < 9.0980] w=0.0901 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)E234.CB) [> 3.4570 = 5.7616 < 7.4901] w=0.0899 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)I210.CB) [> 4.0131 = 6.6884 < 8.6950] w=0.0895 to align # Constraint # added constraint: constraint((T0325)V80.CB, (T0325)E108.CB) [> 4.2739 = 7.1232 < 9.2602] w=0.0894 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)T67.CB) [> 3.6851 = 6.1418 < 7.9844] w=0.0892 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)E178.CB) [> 4.3212 = 7.2020 < 9.3627] w=0.0889 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)V62.CB) [> 3.4743 = 5.7904 < 7.5276] w=0.0884 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)I126.CB) [> 4.0378 = 6.7296 < 8.7485] w=0.0882 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)E209.CB) [> 3.7199 = 6.1998 < 8.0597] w=0.0880 to align # Constraint # added constraint: constraint((T0325)I220.CB, (T0325)P230.CB) [> 3.6388 = 6.0647 < 7.8841] w=0.0879 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)Y43.CB) [> 3.9526 = 6.5877 < 8.5639] w=0.0879 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)A47.CB) [> 3.6177 = 6.0294 < 7.8383] w=0.0879 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)Y89.CB) [> 3.2446 = 5.4077 < 7.0301] w=0.0864 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)N256.CB) [> 3.8808 = 6.4680 < 8.4085] w=0.0862 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)N211.CB) [> 4.2263 = 7.0438 < 9.1570] w=0.0861 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)I126.CB) [> 3.8106 = 6.3510 < 8.2563] w=0.0854 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)I95.CB) [> 3.7488 = 6.2480 < 8.1224] w=0.0848 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)C228.CB) [> 4.0692 = 6.7819 < 8.8165] w=0.0842 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)F208.CB) [> 3.3354 = 5.5591 < 7.2268] w=0.0842 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)I60.CB) [> 3.4743 = 5.7904 < 7.5275] w=0.0841 to align # Constraint # added constraint: constraint((T0325)H27.CB, (T0325)V235.CB) [> 4.5596 = 7.5993 < 9.8791] w=0.0836 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)L180.CB) [> 2.9494 = 4.9156 < 6.3903] w=0.0829 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)H213.CB) [> 4.0111 = 6.6852 < 8.6907] w=0.0816 to align # Constraint # added constraint: constraint((T0325)Q182.CB, (T0325)L196.CB) [> 3.7925 = 6.3208 < 8.2170] w=0.0814 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)L68.CB) [> 3.4117 = 5.6861 < 7.3920] w=0.0814 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)Q224.CB) [> 3.4009 = 5.6682 < 7.3686] w=0.0811 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)I210.CB) [> 4.3231 = 7.2051 < 9.3667] w=0.0808 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)L66.CB) [> 3.9473 = 6.5789 < 8.5526] w=0.0803 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)H213.CB) [> 3.4591 = 5.7651 < 7.4947] w=0.0803 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)A111.CB) [> 3.5020 = 5.8366 < 7.5876] w=0.0800 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)L68.CB) [> 3.3850 = 5.6416 < 7.3341] w=0.0799 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)D127.CB) [> 3.4124 = 5.6873 < 7.3935] w=0.0798 to align # Constraint # added constraint: constraint((T0325)L83.CB, (T0325)I95.CB) [> 3.3120 = 5.5201 < 7.1761] w=0.0797 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)Q182.CB) [> 4.0951 = 6.8252 < 8.8727] w=0.0794 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)V105.CB) [> 3.6864 = 6.1440 < 7.9872] w=0.0793 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)V62.CB) [> 4.3119 = 7.1865 < 9.3424] w=0.0791 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)L66.CB) [> 4.0568 = 6.7614 < 8.7898] w=0.0786 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)C228.CB) [> 4.5062 = 7.5104 < 9.7635] w=0.0782 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)C228.CB) [> 3.9393 = 6.5655 < 8.5351] w=0.0782 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)P39.CB) [> 2.6121 = 4.3535 < 5.6596] w=0.0777 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)Q224.CB) [> 3.6202 = 6.0337 < 7.8439] w=0.0774 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)A255.CB) [> 3.1129 = 5.1882 < 6.7446] w=0.0771 to align # Constraint # added constraint: constraint((T0325)R77.CB, (T0325)A87.CB) [> 3.0984 = 5.1641 < 6.7133] w=0.0765 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)N69.CB) [> 4.3147 = 7.1912 < 9.3485] w=0.0761 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)R233.CB) [> 3.9858 = 6.6430 < 8.6359] w=0.0757 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)I126.CB) [> 3.4368 = 5.7280 < 7.4464] w=0.0750 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)V32.CB) [> 3.9773 = 6.6288 < 8.6174] w=0.0748 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)G120.CA) [> 4.1235 = 6.8726 < 8.9343] w=0.0746 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)M179.CB) [> 3.6014 = 6.0024 < 7.8031] w=0.0738 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)I210.CB) [> 3.7132 = 6.1887 < 8.0453] w=0.0733 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)L196.CB) [> 3.8638 = 6.4397 < 8.3716] w=0.0732 to align # Constraint # added constraint: constraint((T0325)T219.CB, (T0325)R233.CB) [> 3.6496 = 6.0826 < 7.9074] w=0.0730 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)G22.CA) [> 4.0484 = 6.7473 < 8.7715] w=0.0730 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)E209.CB) [> 3.8458 = 6.4096 < 8.3325] w=0.0728 to align # Constraint # added constraint: constraint((T0325)L68.CB, (T0325)E108.CB) [> 3.5112 = 5.8520 < 7.6077] w=0.0728 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)E258.CB) [> 3.7056 = 6.1760 < 8.0288] w=0.0727 to align # Constraint # added constraint: constraint((T0325)S41.CB, (T0325)A111.CB) [> 3.3081 = 5.5135 < 7.1676] w=0.0723 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)I60.CB) [> 4.1271 = 6.8784 < 8.9420] w=0.0723 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)F216.CB) [> 3.1006 = 5.1676 < 6.7179] w=0.0720 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)P76.CB) [> 3.4315 = 5.7192 < 7.4349] w=0.0712 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)D127.CB) [> 3.5862 = 5.9770 < 7.7701] w=0.0712 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)A47.CB) [> 3.3817 = 5.6361 < 7.3269] w=0.0703 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)S128.CB) [> 3.3137 = 5.5228 < 7.1796] w=0.0701 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)N211.CB) [> 3.8973 = 6.4955 < 8.4441] w=0.0699 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)V235.CB) [> 3.4039 = 5.6732 < 7.3751] w=0.0698 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)L68.CB) [> 2.8495 = 4.7492 < 6.1740] w=0.0694 to align # Constraint # added constraint: constraint((T0325)F90.CB, (T0325)V105.CB) [> 3.8589 = 6.4316 < 8.3611] w=0.0690 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)N211.CB) [> 4.4334 = 7.3891 < 9.6058] w=0.0689 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)S128.CB) [> 3.3950 = 5.6583 < 7.3558] w=0.0689 to align # Constraint # added constraint: constraint((T0325)R77.CB, (T0325)G134.CA) [> 3.5083 = 5.8472 < 7.6014] w=0.0688 to align # Constraint # added constraint: constraint((T0325)S41.CB, (T0325)W91.CB) [> 3.4921 = 5.8202 < 7.5663] w=0.0688 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)R233.CB) [> 4.2730 = 7.1216 < 9.2581] w=0.0686 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)N156.CB) [> 3.7994 = 6.3323 < 8.2320] w=0.0685 to align # Constraint # added constraint: constraint((T0325)A26.CB, (T0325)E236.CB) [> 3.8228 = 6.3713 < 8.2827] w=0.0685 to align # Constraint # added constraint: constraint((T0325)E178.CB, (T0325)I210.CB) [> 4.2954 = 7.1589 < 9.3066] w=0.0682 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)D127.CB) [> 4.0690 = 6.7816 < 8.8161] w=0.0681 to align # Constraint # added constraint: constraint((T0325)D218.CB, (T0325)I232.CB) [> 3.7929 = 6.3215 < 8.2179] w=0.0681 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)S128.CB) [> 3.6963 = 6.1606 < 8.0087] w=0.0678 to align # Constraint # added constraint: constraint((T0325)L68.CB, (T0325)V132.CB) [> 4.0508 = 6.7514 < 8.7768] w=0.0677 to align # Constraint # added constraint: constraint((T0325)M179.CB, (T0325)E209.CB) [> 3.8448 = 6.4080 < 8.3305] w=0.0674 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)H213.CB) [> 2.8498 = 4.7497 < 6.1746] w=0.0673 to align # Constraint # added constraint: constraint((T0325)G22.CA, (T0325)T33.CB) [> 4.4349 = 7.3914 < 9.6088] w=0.0668 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)E108.CB) [> 4.0311 = 6.7185 < 8.7340] w=0.0668 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)V207.CB) [> 3.8200 = 6.3667 < 8.2767] w=0.0667 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)L64.CB) [> 4.2832 = 7.1387 < 9.2803] w=0.0666 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)G30.CA) [> 3.7642 = 6.2737 < 8.1558] w=0.0659 to align # Constraint # added constraint: constraint((T0325)L221.CB, (T0325)V243.CB) [> 3.3378 = 5.5630 < 7.2320] w=0.0656 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)L238.CB) [> 3.6624 = 6.1040 < 7.9352] w=0.0655 to align # Constraint # added constraint: constraint((T0325)F216.CB, (T0325)V235.CB) [> 3.9378 = 6.5630 < 8.5319] w=0.0652 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)V235.CB) [> 4.0588 = 6.7646 < 8.7940] w=0.0648 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)I237.CB) [> 4.2880 = 7.1466 < 9.2906] w=0.0646 to align # Constraint # added constraint: constraint((T0325)L221.CB, (T0325)P230.CB) [> 3.8826 = 6.4709 < 8.4122] w=0.0644 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)G226.CA) [> 4.1793 = 6.9655 < 9.0551] w=0.0642 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)V62.CB) [> 3.8798 = 6.4663 < 8.4062] w=0.0641 to align # Constraint # added constraint: constraint((T0325)T163.CB, (T0325)P214.CB) [> 2.5413 = 4.2355 < 5.5062] w=0.0639 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)I237.CB) [> 3.6774 = 6.1291 < 7.9678] w=0.0638 to align # Constraint # added constraint: constraint((T0325)L68.CB, (T0325)D127.CB) [> 4.2720 = 7.1201 < 9.2561] w=0.0636 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)S259.CB) [> 3.7004 = 6.1673 < 8.0175] w=0.0625 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)I210.CB) [> 4.1917 = 6.9861 < 9.0820] w=0.0624 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)E209.CB) [> 3.4222 = 5.7037 < 7.4148] w=0.0624 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)N211.CB) [> 4.3594 = 7.2656 < 9.4453] w=0.0612 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)N211.CB) [> 3.9724 = 6.6206 < 8.6068] w=0.0611 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)C212.CB) [> 3.9584 = 6.5973 < 8.5765] w=0.0610 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)P73.CB) [> 4.4023 = 7.3371 < 9.5383] w=0.0604 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)I74.CB) [> 4.1233 = 6.8721 < 8.9337] w=0.0604 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)R159.CB) [> 3.9280 = 6.5466 < 8.5106] w=0.0602 to align # Constraint # added constraint: constraint((T0325)Y227.CB, (T0325)E236.CB) [> 3.0219 = 5.0364 < 6.5473] w=0.0600 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)P214.CB) [> 4.0239 = 6.7065 < 8.7185] w=0.0592 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)A47.CB) [> 4.3320 = 7.2201 < 9.3861] w=0.0590 to align # Constraint # added constraint: constraint((T0325)G14.CA, (T0325)H213.CB) [> 3.7413 = 6.2354 < 8.1061] w=0.0590 to align # Constraint # added constraint: constraint((T0325)D177.CB, (T0325)E209.CB) [> 4.3109 = 7.1849 < 9.3403] w=0.0587 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)E234.CB) [> 4.0042 = 6.6737 < 8.6758] w=0.0587 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)N211.CB) [> 3.4794 = 5.7990 < 7.5387] w=0.0579 to align # Constraint # added constraint: constraint((T0325)P230.CB, (T0325)T239.CB) [> 2.9814 = 4.9689 < 6.4596] w=0.0578 to align # Constraint # added constraint: constraint((T0325)M229.CB, (T0325)S240.CB) [> 4.4304 = 7.3840 < 9.5992] w=0.0578 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)L144.CB) [> 3.8530 = 6.4216 < 8.3481] w=0.0571 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)D177.CB) [> 4.0778 = 6.7963 < 8.8352] w=0.0566 to align # Constraint # added constraint: constraint((T0325)N211.CB, (T0325)C228.CB) [> 3.2390 = 5.3984 < 7.0179] w=0.0565 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L66.CB) [> 4.2180 = 7.0300 < 9.1390] w=0.0564 to align # Constraint # added constraint: constraint((T0325)H213.CB, (T0325)M229.CB) [> 4.4519 = 7.4198 < 9.6458] w=0.0563 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)Y227.CB) [> 3.8578 = 6.4297 < 8.3586] w=0.0555 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)I126.CB) [> 3.5930 = 5.9883 < 7.7848] w=0.0554 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)L238.CB) [> 3.8956 = 6.4927 < 8.4404] w=0.0546 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)A47.CB) [> 2.9481 = 4.9135 < 6.3875] w=0.0544 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)P214.CB) [> 3.6721 = 6.1201 < 7.9562] w=0.0544 to align # Constraint # added constraint: constraint((T0325)L180.CB, (T0325)P214.CB) [> 3.0065 = 5.0108 < 6.5141] w=0.0544 to align # Constraint # added constraint: constraint((T0325)M199.CB, (T0325)T239.CB) [> 4.2805 = 7.1342 < 9.2744] w=0.0539 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)I126.CB) [> 4.2914 = 7.1523 < 9.2979] w=0.0533 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)Y89.CB) [> 3.6821 = 6.1369 < 7.9780] w=0.0533 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)L196.CB) [> 3.9803 = 6.6339 < 8.6241] w=0.0527 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)A59.CB) [> 4.1678 = 6.9464 < 9.0303] w=0.0526 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)C212.CB) [> 4.7087 = 7.8478 < 10.2021] w=0.0525 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)H63.CB) [> 3.0497 = 5.0828 < 6.6076] w=0.0520 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)V84.CB) [> 3.6058 = 6.0097 < 7.8127] w=0.0518 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)H213.CB) [> 4.2382 = 7.0636 < 9.1827] w=0.0515 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)I237.CB) [> 3.4014 = 5.6691 < 7.3698] w=0.0511 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)I193.CB) [> 3.7189 = 6.1982 < 8.0577] w=0.0509 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)M229.CB) [> 4.1926 = 6.9876 < 9.0839] w=0.0509 to align # Constraint # added constraint: constraint((T0325)D218.CB, (T0325)S240.CB) [> 3.8299 = 6.3832 < 8.2981] w=0.0492 to align # Constraint # added constraint: constraint((T0325)I193.CB, (T0325)H213.CB) [> 4.5452 = 7.5753 < 9.8479] w=0.0490 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)C212.CB) [> 3.0231 = 5.0386 < 6.5501] w=0.0488 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)S128.CB) [> 3.9773 = 6.6289 < 8.6175] w=0.0486 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L238.CB) [> 4.5534 = 7.5890 < 9.8656] w=0.0484 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)V84.CB) [> 3.1652 = 5.2753 < 6.8579] w=0.0479 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)H213.CB) [> 4.3954 = 7.3257 < 9.5233] w=0.0473 to align # Constraint # added constraint: constraint((T0325)S2.CB, (T0325)I252.CB) [> 4.2511 = 7.0852 < 9.2107] w=0.0471 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)I126.CB) [> 4.6901 = 7.8168 < 10.1618] w=0.0461 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)V105.CB) [> 3.0750 = 5.1250 < 6.6625] w=0.0459 to align # Constraint # added constraint: constraint((T0325)Y89.CB, (T0325)Y181.CB) [> 3.9325 = 6.5542 < 8.5204] w=0.0456 to align # Constraint # added constraint: constraint((T0325)R29.CB, (T0325)T57.CB) [> 4.7306 = 7.8843 < 10.2496] w=0.0456 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)A215.CB) [> 4.0465 = 6.7441 < 8.7673] w=0.0454 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)I237.CB) [> 2.8830 = 4.8050 < 6.2465] w=0.0454 to align # Constraint # added constraint: constraint((T0325)E209.CB, (T0325)Y227.CB) [> 4.5660 = 7.6100 < 9.8930] w=0.0453 to align # Constraint # added constraint: constraint((T0325)I220.CB, (T0325)T239.CB) [> 3.3700 = 5.6166 < 7.3016] w=0.0447 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)N211.CB) [> 2.7753 = 4.6255 < 6.0131] w=0.0445 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)N211.CB) [> 4.6839 = 7.8065 < 10.1484] w=0.0445 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)E209.CB) [> 4.2986 = 7.1643 < 9.3135] w=0.0445 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)D127.CB) [> 4.2667 = 7.1111 < 9.2444] w=0.0444 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)D127.CB) [> 3.6343 = 6.0571 < 7.8743] w=0.0444 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)N211.CB) [> 4.4552 = 7.4254 < 9.6530] w=0.0438 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)H213.CB) [> 4.3257 = 7.2096 < 9.3724] w=0.0438 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)P214.CB) [> 4.0406 = 6.7343 < 8.7546] w=0.0436 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)L196.CB) [> 3.8691 = 6.4486 < 8.3831] w=0.0433 to align # Constraint # added constraint: constraint((T0325)L221.CB, (T0325)I232.CB) [> 2.5949 = 4.3248 < 5.6222] w=0.0433 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)F90.CB) [> 3.7512 = 6.2520 < 8.1277] w=0.0428 to align # Constraint # added constraint: constraint((T0325)Y170.CB, (T0325)H213.CB) [> 2.9677 = 4.9461 < 6.4299] w=0.0427 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)N211.CB) [> 4.1464 = 6.9107 < 8.9839] w=0.0424 to align # Constraint # added constraint: constraint((T0325)C212.CB, (T0325)L260.CB) [> 3.6215 = 6.0358 < 7.8466] w=0.0418 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)C212.CB) [> 3.7022 = 6.1703 < 8.0214] w=0.0408 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)P214.CB) [> 4.5043 = 7.5071 < 9.7593] w=0.0408 to align # Constraint # added constraint: constraint((T0325)H130.CB, (T0325)Y170.CB) [> 3.8938 = 6.4896 < 8.4365] w=0.0402 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)I193.CB) [> 4.1657 = 6.9429 < 9.0258] w=0.0398 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)L75.CB) [> 2.2762 = 3.7937 < 4.9319] w=0.0397 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)E108.CB) [> 3.3974 = 5.6624 < 7.3611] w=0.0396 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)I210.CB) [> 4.2723 = 7.1204 < 9.2565] w=0.0392 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)L196.CB) [> 4.0529 = 6.7548 < 8.7812] w=0.0384 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)I60.CB) [> 3.6633 = 6.1055 < 7.9372] w=0.0383 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)H63.CB) [> 4.3685 = 7.2809 < 9.4651] w=0.0368 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)D127.CB) [> 3.8060 = 6.3434 < 8.2464] w=0.0364 to align # Constraint # added constraint: constraint((T0325)A18.CB, (T0325)R29.CB) [> 4.0608 = 6.7680 < 8.7984] w=0.0363 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)S128.CB) [> 3.6016 = 6.0027 < 7.8035] w=0.0362 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)P73.CB) [> 3.1613 = 5.2688 < 6.8494] w=0.0362 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)H63.CB) [> 4.0227 = 6.7045 < 8.7158] w=0.0360 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)N156.CB) [> 3.4464 = 5.7441 < 7.4673] w=0.0360 to align # Constraint # added constraint: constraint((T0325)E25.CB, (T0325)L238.CB) [> 2.4143 = 4.0239 < 5.2311] w=0.0360 to align # Constraint # added constraint: constraint((T0325)V80.CB, (T0325)F96.CB) [> 4.0486 = 6.7477 < 8.7720] w=0.0356 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)D127.CB) [> 2.8999 = 4.8332 < 6.2832] w=0.0355 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)R159.CB) [> 3.8588 = 6.4314 < 8.3608] w=0.0353 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)F90.CB) [> 2.8847 = 4.8078 < 6.2502] w=0.0353 to align # Constraint # added constraint: constraint((T0325)F44.CB, (T0325)V84.CB) [> 4.0622 = 6.7704 < 8.8015] w=0.0353 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)T36.CB) [> 4.3453 = 7.2421 < 9.4148] w=0.0352 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)L38.CB) [> 3.7106 = 6.1844 < 8.0397] w=0.0352 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L38.CB) [> 4.3571 = 7.2618 < 9.4404] w=0.0352 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)F96.CB) [> 4.5091 = 7.5152 < 9.7697] w=0.0352 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)Y170.CB) [> 4.4568 = 7.4280 < 9.6564] w=0.0351 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)L196.CB) [> 4.2516 = 7.0861 < 9.2119] w=0.0347 to align # Constraint # added constraint: constraint((T0325)I217.CB, (T0325)L260.CB) [> 4.4873 = 7.4789 < 9.7226] w=0.0347 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)L260.CB) [> 2.9491 = 4.9151 < 6.3896] w=0.0347 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)L260.CB) [> 2.6604 = 4.4341 < 5.7643] w=0.0347 to align # Constraint # added constraint: constraint((T0325)P214.CB, (T0325)S259.CB) [> 4.4959 = 7.4932 < 9.7411] w=0.0347 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)H213.CB) [> 4.4905 = 7.4842 < 9.7294] w=0.0346 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)L64.CB) [> 4.1600 = 6.9333 < 9.0133] w=0.0343 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)L66.CB) [> 4.5462 = 7.5770 < 9.8501] w=0.0341 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)E209.CB) [> 3.8624 = 6.4373 < 8.3685] w=0.0338 to align # Constraint # added constraint: constraint((T0325)I210.CB, (T0325)L260.CB) [> 4.3909 = 7.3182 < 9.5136] w=0.0335 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T67.CB) [> 3.9253 = 6.5422 < 8.5048] w=0.0335 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)D127.CB) [> 4.7026 = 7.8377 < 10.1890] w=0.0334 to align # Constraint # added constraint: constraint((T0325)F90.CB, (T0325)E108.CB) [> 3.6237 = 6.0396 < 7.8515] w=0.0332 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)T40.CB) [> 4.5018 = 7.5030 < 9.7539] w=0.0330 to align # Constraint # added constraint: constraint((T0325)E25.CB, (T0325)Y227.CB) [> 4.2265 = 7.0441 < 9.1574] w=0.0328 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)C212.CB) [> 3.5776 = 5.9626 < 7.7514] w=0.0325 to align # Constraint # added constraint: constraint((T0325)A215.CB, (T0325)I237.CB) [> 3.0305 = 5.0509 < 6.5662] w=0.0325 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)L238.CB) [> 4.6788 = 7.7980 < 10.1374] w=0.0324 to align # Constraint # added constraint: constraint((T0325)N156.CB, (T0325)H213.CB) [> 3.3094 = 5.5157 < 7.1704] w=0.0320 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)P214.CB) [> 4.2939 = 7.1566 < 9.3035] w=0.0318 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)N156.CB) [> 4.6461 = 7.7436 < 10.0666] w=0.0316 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)C212.CB) [> 4.5046 = 7.5077 < 9.7600] w=0.0315 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)L64.CB) [> 4.1290 = 6.8816 < 8.9461] w=0.0313 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)H63.CB) [> 4.4705 = 7.4508 < 9.6860] w=0.0311 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)H63.CB) [> 3.4658 = 5.7764 < 7.5093] w=0.0311 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)H63.CB) [> 3.8486 = 6.4144 < 8.3387] w=0.0311 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)S128.CB) [> 3.3589 = 5.5982 < 7.2776] w=0.0306 to align # Constraint # added constraint: constraint((T0325)Y181.CB, (T0325)G226.CA) [> 4.4439 = 7.4064 < 9.6284] w=0.0305 to align # Constraint # added constraint: constraint((T0325)P42.CB, (T0325)T65.CB) [> 4.5408 = 7.5679 < 9.8383] w=0.0296 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)N211.CB) [> 3.6531 = 6.0885 < 7.9150] w=0.0296 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)I210.CB) [> 3.4249 = 5.7083 < 7.4207] w=0.0296 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)I193.CB) [> 3.9354 = 6.5590 < 8.5266] w=0.0296 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)L196.CB) [> 4.6958 = 7.8263 < 10.1741] w=0.0296 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)I210.CB) [> 3.8573 = 6.4288 < 8.3574] w=0.0295 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)E209.CB) [> 4.5507 = 7.5845 < 9.8599] w=0.0294 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)C212.CB) [> 4.1233 = 6.8721 < 8.9337] w=0.0293 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)I193.CB) [> 2.8745 = 4.7909 < 6.2281] w=0.0292 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)T65.CB) [> 4.0418 = 6.7364 < 8.7573] w=0.0290 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)R159.CB) [> 3.6463 = 6.0771 < 7.9003] w=0.0287 to align # Constraint # added constraint: constraint((T0325)S2.CB, (T0325)A59.CB) [> 4.7057 = 7.8428 < 10.1957] w=0.0283 to align # Constraint # added constraint: constraint((T0325)S2.CB, (T0325)I60.CB) [> 3.3063 = 5.5105 < 7.1636] w=0.0283 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)T40.CB) [> 4.4141 = 7.3568 < 9.5638] w=0.0283 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)P73.CB) [> 4.2834 = 7.1390 < 9.2807] w=0.0283 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)A59.CB) [> 4.3984 = 7.3306 < 9.5298] w=0.0283 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)I60.CB) [> 3.9494 = 6.5823 < 8.5570] w=0.0252 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)A59.CB) [> 4.4430 = 7.4050 < 9.6265] w=0.0249 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)R159.CB) [> 4.5703 = 7.6172 < 9.9024] w=0.0246 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)R159.CB) [> 3.2940 = 5.4901 < 7.1371] w=0.0246 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)R159.CB) [> 4.6723 = 7.7872 < 10.1233] w=0.0242 to align # Constraint # added constraint: constraint((T0325)L64.CB, (T0325)N156.CB) [> 4.0541 = 6.7569 < 8.7840] w=0.0241 to align # Constraint # added constraint: constraint((T0325)R159.CB, (T0325)C202.CB) [> 2.9313 = 4.8855 < 6.3512] w=0.0241 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)L75.CB) [> 3.7796 = 6.2994 < 8.1892] w=0.0238 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L75.CB) [> 4.2202 = 7.0337 < 9.1439] w=0.0237 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)I126.CB) [> 4.7581 = 7.9302 < 10.3093] w=0.0237 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)S128.CB) [> 4.0836 = 6.8060 < 8.8478] w=0.0237 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)F96.CB) [> 4.2308 = 7.0513 < 9.1667] w=0.0237 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)L75.CB) [> 2.8110 = 4.6851 < 6.0906] w=0.0237 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)L75.CB) [> 2.5791 = 4.2985 < 5.5880] w=0.0237 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)L66.CB) [> 4.2581 = 7.0968 < 9.2259] w=0.0236 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)L64.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.0235 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)E209.CB) [> 4.5318 = 7.5529 < 9.8188] w=0.0231 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)I217.CB) [> 4.7432 = 7.9053 < 10.2768] w=0.0231 to align # Constraint # added constraint: constraint((T0325)E108.CB, (T0325)N211.CB) [> 2.9959 = 4.9931 < 6.4911] w=0.0231 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)E209.CB) [> 4.7938 = 7.9897 < 10.3866] w=0.0231 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)F216.CB) [> 4.4080 = 7.3467 < 9.5507] w=0.0231 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)S34.CB) [> 3.6897 = 6.1494 < 7.9943] w=0.0231 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)L75.CB) [> 4.5972 = 7.6621 < 9.9607] w=0.0231 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)I210.CB) [> 3.1935 = 5.3226 < 6.9193] w=0.0228 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)T65.CB) [> 4.0340 = 6.7234 < 8.7404] w=0.0222 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)T65.CB) [> 4.6266 = 7.7110 < 10.0243] w=0.0222 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)T67.CB) [> 3.0666 = 5.1110 < 6.6442] w=0.0222 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)A215.CB) [> 4.5240 = 7.5399 < 9.8019] w=0.0222 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)I217.CB) [> 3.7671 = 6.2784 < 8.1620] w=0.0222 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)N211.CB) [> 4.6285 = 7.7141 < 10.0284] w=0.0222 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)C212.CB) [> 3.8750 = 6.4584 < 8.3959] w=0.0222 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)H213.CB) [> 4.3813 = 7.3021 < 9.4927] w=0.0222 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)P214.CB) [> 4.0872 = 6.8120 < 8.8556] w=0.0222 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)E209.CB) [> 4.2825 = 7.1375 < 9.2788] w=0.0222 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)L64.CB) [> 4.1111 = 6.8519 < 8.9075] w=0.0205 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)N156.CB) [> 3.9419 = 6.5699 < 8.5408] w=0.0205 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)N156.CB) [> 3.3036 = 5.5060 < 7.1578] w=0.0205 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)L144.CB) [> 4.6083 = 7.6805 < 9.9846] w=0.0205 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)C212.CB) [> 4.2239 = 7.0398 < 9.1517] w=0.0205 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)A215.CB) [> 3.0619 = 5.1032 < 6.6341] w=0.0205 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)P214.CB) [> 4.2800 = 7.1334 < 9.2734] w=0.0205 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)K149.CB) [> 4.1369 = 6.8948 < 8.9633] w=0.0202 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)I210.CB) [> 4.5618 = 7.6030 < 9.8839] w=0.0200 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)C212.CB) [> 4.3004 = 7.1673 < 9.3175] w=0.0198 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)E209.CB) [> 3.2124 = 5.3541 < 6.9603] w=0.0198 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)P214.CB) [> 2.9447 = 4.9078 < 6.3801] w=0.0198 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)P214.CB) [> 3.8615 = 6.4359 < 8.3667] w=0.0198 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)A215.CB) [> 4.2075 = 7.0124 < 9.1162] w=0.0198 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)C212.CB) [> 3.6297 = 6.0495 < 7.8643] w=0.0198 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)C212.CB) [> 4.3517 = 7.2529 < 9.4288] w=0.0198 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)I193.CB) [> 4.5528 = 7.5880 < 9.8644] w=0.0198 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)E108.CB) [> 3.6340 = 6.0567 < 7.8738] w=0.0196 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)E108.CB) [> 3.4443 = 5.7405 < 7.4626] w=0.0196 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)V105.CB) [> 4.7530 = 7.9218 < 10.2983] w=0.0196 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)L196.CB) [> 3.8660 = 6.4434 < 8.3764] w=0.0195 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)L64.CB) [> 3.6448 = 6.0746 < 7.8970] w=0.0194 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)S128.CB) [> 4.2329 = 7.0549 < 9.1714] w=0.0194 to align # Constraint # added constraint: constraint((T0325)D12.CB, (T0325)S34.CB) [> 3.3314 = 5.5523 < 7.2180] w=0.0193 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T33.CB) [> 4.5391 = 7.5651 < 9.8347] w=0.0193 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)C202.CB) [> 4.5537 = 7.5895 < 9.8664] w=0.0185 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)T67.CB) [> 4.3560 = 7.2601 < 9.4381] w=0.0178 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)C212.CB) [> 4.5895 = 7.6491 < 9.9439] w=0.0176 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)A215.CB) [> 3.5898 = 5.9831 < 7.7780] w=0.0176 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)A215.CB) [> 4.1106 = 6.8510 < 8.9063] w=0.0176 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)P214.CB) [> 3.9587 = 6.5979 < 8.5772] w=0.0176 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)A215.CB) [> 2.4746 = 4.1243 < 5.3616] w=0.0176 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)P214.CB) [> 3.9125 = 6.5209 < 8.4772] w=0.0174 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)D127.CB) [> 3.5931 = 5.9885 < 7.7851] w=0.0170 to align # Constraint # added constraint: constraint((T0325)Q21.CB, (T0325)E108.CB) [> 4.7015 = 7.8359 < 10.1866] w=0.0169 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)A215.CB) [> 4.3663 = 7.2772 < 9.4604] w=0.0169 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)A215.CB) [> 4.0650 = 6.7751 < 8.8076] w=0.0169 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)N211.CB) [> 2.7066 = 4.5110 < 5.8643] w=0.0148 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)L75.CB) [> 3.5336 = 5.8893 < 7.6561] w=0.0121 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)S128.CB) [> 2.5453 = 4.2421 < 5.5148] w=0.0121 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)I126.CB) [> 4.2317 = 7.0528 < 9.1686] w=0.0121 to align # Constraint # added constraint: constraint((T0325)L144.CB, (T0325)E209.CB) [> 4.2696 = 7.1160 < 9.2508] w=0.0121 to align # Constraint # added constraint: constraint((T0325)V105.CB, (T0325)L196.CB) [> 3.9368 = 6.5614 < 8.5298] w=0.0120 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)L196.CB) [> 4.7758 = 7.9597 < 10.3477] w=0.0120 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)L196.CB) [> 3.3228 = 5.5380 < 7.1994] w=0.0119 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)I193.CB) [> 4.0645 = 6.7742 < 8.8064] w=0.0119 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)E209.CB) [> 4.0823 = 6.8039 < 8.8450] w=0.0119 to align # Constraint # added constraint: constraint((T0325)T36.CB, (T0325)P73.CB) [> 4.6120 = 7.6867 < 9.9927] w=0.0119 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)E209.CB) [> 3.3910 = 5.6517 < 7.3472] w=0.0119 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)L169.CB) [> 3.5285 = 5.8809 < 7.6452] w=0.0119 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)R159.CB) [> 4.5332 = 7.5553 < 9.8219] w=0.0119 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)R159.CB) [> 3.5146 = 5.8576 < 7.6149] w=0.0119 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)I193.CB) [> 4.5645 = 7.6075 < 9.8897] w=0.0119 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)L196.CB) [> 2.7362 = 4.5603 < 5.9284] w=0.0119 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)P73.CB) [> 4.3195 = 7.1992 < 9.3590] w=0.0119 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)P73.CB) [> 4.4620 = 7.4366 < 9.6676] w=0.0119 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)L144.CB) [> 2.8039 = 4.6732 < 6.0752] w=0.0119 to align # Constraint # added constraint: constraint((T0325)H63.CB, (T0325)R159.CB) [> 4.0343 = 6.7238 < 8.7410] w=0.0119 to align # Constraint # added constraint: constraint((T0325)T65.CB, (T0325)R159.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.0119 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)R159.CB) [> 3.7590 = 6.2649 < 8.1444] w=0.0119 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)H63.CB) [> 3.8057 = 6.3429 < 8.2458] w=0.0119 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)E108.CB) [> 4.7590 = 7.9317 < 10.3112] w=0.0117 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)L75.CB) [> 3.1719 = 5.2865 < 6.8725] w=0.0117 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)L75.CB) [> 3.9102 = 6.5171 < 8.4722] w=0.0117 to align # Constraint # added constraint: constraint((T0325)I126.CB, (T0325)H213.CB) [> 4.0607 = 6.7678 < 8.7981] w=0.0116 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)P214.CB) [> 3.8419 = 6.4032 < 8.3241] w=0.0116 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)H213.CB) [> 4.3050 = 7.1750 < 9.3275] w=0.0116 to align # Constraint # added constraint: constraint((T0325)S128.CB, (T0325)A215.CB) [> 4.2441 = 7.0734 < 9.1954] w=0.0116 to align # Constraint # added constraint: constraint((T0325)T40.CB, (T0325)D127.CB) [> 3.4540 = 5.7566 < 7.4837] w=0.0116 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)D127.CB) [> 3.9178 = 6.5296 < 8.4885] w=0.0116 to align # Constraint # added constraint: constraint((T0325)L66.CB, (T0325)E209.CB) [> 3.6897 = 6.1496 < 7.9945] w=0.0113 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)A215.CB) [> 2.3696 = 3.9494 < 5.1342] w=0.0112 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)N156.CB) [> 3.2472 = 5.4119 < 7.0355] w=0.0112 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)A215.CB) [> 2.3261 = 3.8769 < 5.0400] w=0.0112 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)P214.CB) [> 4.3185 = 7.1975 < 9.3568] w=0.0112 to align # Constraint # added constraint: constraint((T0325)I7.CB, (T0325)H213.CB) [> 3.7819 = 6.3032 < 8.1941] w=0.0112 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)N156.CB) [> 4.6344 = 7.7240 < 10.0412] w=0.0112 to align # Constraint # added constraint: constraint((T0325)L6.CB, (T0325)H63.CB) [> 4.4101 = 7.3501 < 9.5551] w=0.0112 to align # Constraint # added constraint: constraint((T0325)V62.CB, (T0325)V105.CB) [> 4.1378 = 6.8963 < 8.9652] w=0.0111 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)C202.CB) [> 4.1023 = 6.8371 < 8.8883] w=0.0101 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)R159.CB) [> 3.1920 = 5.3199 < 6.9159] w=0.0099 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)I210.CB) [> 3.2632 = 5.4386 < 7.0702] w=0.0099 to align # Constraint # added constraint: constraint((T0325)T67.CB, (T0325)H213.CB) [> 4.7748 = 7.9580 < 10.3453] w=0.0099 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)H213.CB) [> 4.4117 = 7.3528 < 9.5586] w=0.0099 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)H213.CB) [> 4.6285 = 7.7141 < 10.0284] w=0.0099 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)C212.CB) [> 4.2183 = 7.0305 < 9.1397] w=0.0099 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)H213.CB) [> 3.8668 = 6.4446 < 8.3780] w=0.0099 to align # Constraint # added constraint: constraint((T0325)L38.CB, (T0325)A215.CB) [> 3.8093 = 6.3489 < 8.2535] w=0.0099 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)H213.CB) [> 2.5130 = 4.1883 < 5.4448] w=0.0099 to align # Constraint # added constraint: constraint((T0325)P39.CB, (T0325)A215.CB) [> 3.3191 = 5.5319 < 7.1915] w=0.0099 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)D127.CB) [> 2.8751 = 4.7919 < 6.2294] w=0.0098 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)S128.CB) [> 3.6616 = 6.1026 < 7.9334] w=0.0098 to align # Constraint # added constraint: constraint((T0325)A47.CB, (T0325)N156.CB) [> 4.4055 = 7.3424 < 9.5452] w=0.0098 to align # Constraint # added constraint: constraint((T0325)M1.CB, (T0325)V31.CB) [> 3.6892 = 6.1487 < 7.9933] w=0.0098 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)I126.CB) [> 3.9423 = 6.5706 < 8.5418] w=0.0098 to align # Constraint # added constraint: constraint((T0325)S34.CB, (T0325)D127.CB) [> 3.2533 = 5.4222 < 7.0489] w=0.0098 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)D127.CB) [> 3.0605 = 5.1007 < 6.6310] w=0.0096 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)L75.CB) [> 4.0178 = 6.6963 < 8.7051] w=0.0094 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)H213.CB) [> 3.1646 = 5.2743 < 6.8566] w=0.0092 to align # Constraint # added constraint: constraint((T0325)A59.CB, (T0325)E209.CB) [> 4.6600 = 7.7667 < 10.0967] w=0.0092 to align # Constraint # added constraint: constraint((T0325)T33.CB, (T0325)A47.CB) [> 4.5300 = 7.5499 < 9.8149] w=0.0085 to align # Constraint # added constraint: constraint((T0325)I60.CB, (T0325)P73.CB) [> 4.4841 = 7.4735 < 9.7155] w=0.0083 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)T40.CB) [> 3.8890 = 6.4817 < 8.4263] w=0.0082 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)H213.CB) [> 3.2837 = 5.4729 < 7.1148] w=0.0082 to align # Constraint # added constraint: constraint((T0325)P73.CB, (T0325)A215.CB) [> 2.5468 = 4.2447 < 5.5181] w=0.0082 to align # Constraint # added constraint: constraint((T0325)I8.CB, (T0325)L64.CB) [> 4.3702 = 7.2837 < 9.4688] w=0.0082 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)L64.CB) [> 4.6080 = 7.6800 < 9.9840] w=0.0082 to align # Constraint # added constraint: constraint((T0325)F13.CB, (T0325)T65.CB) [> 4.1768 = 6.9614 < 9.0498] w=0.0082 to align # Constraint # added constraint: constraint((T0325)L75.CB, (T0325)P214.CB) [> 4.3611 = 7.2684 < 9.4490] w=0.0082 to align # Constraint # added constraint: constraint((T0325)D127.CB, (T0325)I193.CB) [> 4.6072 = 7.6786 < 9.9822] w=0.0082 to align # Constraint # added constraint: constraint((T0325)N9.CB, (T0325)P73.CB) [> 3.4151 = 5.6918 < 7.3993] w=0.0075 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)P73.CB) [> 4.1144 = 6.8574 < 8.9146] w=0.0075 to align # Constraint # added constraint: constraint((T0325)A37.CB, (T0325)E108.CB) [> 4.6966 = 7.8277 < 10.1760] w=0.0075 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)H213.CB) [> 4.6314 = 7.7189 < 10.0346] w=0.0057 to align # Constraint # added constraint: constraint((T0325)L196.CB, (T0325)P214.CB) [> 4.1675 = 6.9458 < 9.0295] w=0.0057 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)N156.CB) [> 4.5766 = 7.6276 < 9.9159] w=0.0056 to align # Constraint # added constraint: constraint((T0325)A10.CB, (T0325)I210.CB) [> 4.4693 = 7.4489 < 9.6836] w=0.0056 to align Unrecognized cost function all for SetCost Unrecognized cost function 1 for SetCost # SetCost created cost = # ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0325/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0325/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 149, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 150, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 151, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 545, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 546, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 547, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 Faking rotamer for incomplete or colinear backbone at (T0325)N107 Faking rotamer for incomplete or colinear backbone at (T0325)N107 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)N9.CA and (T0325)N9.CB only 0.000 apart, marking (T0325)N9.CB as missing WARNING: atoms too close: (T0325)V19.CA and (T0325)V19.CB only 0.000 apart, marking (T0325)V19.CB as missing WARNING: atoms too close: (T0325)E25.CA and (T0325)E25.CB only 0.000 apart, marking (T0325)E25.CB as missing WARNING: atoms too close: (T0325)T40.CA and (T0325)T40.CB only 0.000 apart, marking (T0325)T40.CB as missing WARNING: atoms too close: (T0325)Y43.CA and (T0325)Y43.CB only 0.000 apart, marking (T0325)Y43.CB as missing WARNING: atoms too close: (T0325)P73.CA and (T0325)P73.CB only 0.000 apart, marking (T0325)P73.CB as missing WARNING: atoms too close: (T0325)R77.CA and (T0325)R77.CB only 0.000 apart, marking (T0325)R77.CB as missing WARNING: atoms too close: (T0325)V80.CA and (T0325)V80.CB only 0.000 apart, marking (T0325)V80.CB as missing WARNING: atoms too close: (T0325)D85.CA and (T0325)D85.CB only 0.000 apart, marking (T0325)D85.CB as missing WARNING: atoms too close: (T0325)A87.CA and (T0325)A87.CB only 0.000 apart, marking (T0325)A87.CB as missing WARNING: atoms too close: (T0325)F90.CA and (T0325)F90.CB only 0.000 apart, marking (T0325)F90.CB as missing WARNING: atoms too close: (T0325)S94.CA and (T0325)S94.CB only 0.000 apart, marking (T0325)S94.CB as missing WARNING: atoms too close: (T0325)E97.CA and (T0325)E97.CB only 0.000 apart, marking (T0325)E97.CB as missing WARNING: atoms too close: (T0325)E103.CA and (T0325)E103.CB only 0.000 apart, marking (T0325)E103.CB as missing WARNING: atoms too close: (T0325)E108.CA and (T0325)E108.CB only 0.000 apart, marking (T0325)E108.CB as missing WARNING: atoms too close: (T0325)I114.CA and (T0325)I114.CB only 0.000 apart, marking (T0325)I114.CB as missing WARNING: atoms too close: (T0325)D124.CA and (T0325)D124.CB only 0.000 apart, marking (T0325)D124.CB as missing WARNING: atoms too close: (T0325)V132.CA and (T0325)V132.CB only 0.000 apart, marking (T0325)V132.CB as missing WARNING: atoms too close: (T0325)A147.CA and (T0325)A147.CB only 0.000 apart, marking (T0325)A147.CB as missing WARNING: atoms too close: (T0325)Y150.CA and (T0325)Y150.CB only 0.000 apart, marking (T0325)Y150.CB as missing WARNING: atoms too close: (T0325)S160.CA and (T0325)S160.CB only 0.000 apart, marking (T0325)S160.CB as missing WARNING: atoms too close: (T0325)T163.CA and (T0325)T163.CB only 0.000 apart, marking (T0325)T163.CB as missing WARNING: atoms too close: (T0325)Y166.CA and (T0325)Y166.CB only 0.000 apart, marking (T0325)Y166.CB as missing WARNING: atoms too close: (T0325)L169.CA and (T0325)L169.CB only 0.000 apart, marking (T0325)L169.CB as missing WARNING: atoms too close: (T0325)Q171.CA and (T0325)Q171.CB only 0.000 apart, marking (T0325)Q171.CB as missing WARNING: atoms too close: (T0325)K186.CA and (T0325)K186.CB only 0.000 apart, marking (T0325)K186.CB as missing WARNING: atoms too close: (T0325)T192.CA and (T0325)T192.CB only 0.000 apart, marking (T0325)T192.CB as missing WARNING: atoms too close: (T0325)I193.CA and (T0325)I193.CB only 0.000 apart, marking (T0325)I193.CB as missing WARNING: atoms too close: (T0325)M199.CA and (T0325)M199.CB only 0.000 apart, marking (T0325)M199.CB as missing WARNING: atoms too close: (T0325)E209.CA and (T0325)E209.CB only 0.000 apart, marking (T0325)E209.CB as missing WARNING: atoms too close: (T0325)C228.CA and (T0325)C228.CB only 0.000 apart, marking (T0325)C228.CB as missing WARNING: atoms too close: (T0325)E236.CA and (T0325)E236.CB only 0.000 apart, marking (T0325)E236.CB as missing WARNING: atoms too close: (T0325)S259.CA and (T0325)S259.CB only 0.000 apart, marking (T0325)S259.CB as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)K4.CA and (T0325)K4.CB only 0.000 apart, marking (T0325)K4.CB as missing WARNING: atoms too close: (T0325)Y15.CA and (T0325)Y15.CB only 0.000 apart, marking (T0325)Y15.CB as missing WARNING: atoms too close: (T0325)I23.CA and (T0325)I23.CB only 0.000 apart, marking (T0325)I23.CB as missing WARNING: atoms too close: (T0325)L38.CA and (T0325)L38.CB only 0.000 apart, marking (T0325)L38.CB as missing WARNING: atoms too close: (T0325)Y43.CA and (T0325)Y43.CB only 0.000 apart, marking (T0325)Y43.CB as missing WARNING: atoms too close: (T0325)A51.CA and (T0325)A51.CB only 0.000 apart, marking (T0325)A51.CB as missing WARNING: atoms too close: (T0325)R52.CA and (T0325)R52.CB only 0.000 apart, marking (T0325)R52.CB as missing WARNING: atoms too close: (T0325)A59.CA and (T0325)A59.CB only 0.000 apart, marking (T0325)A59.CB as missing WARNING: atoms too close: (T0325)I60.CA and (T0325)I60.CB only 0.000 apart, marking (T0325)I60.CB as missing WARNING: atoms too close: (T0325)P73.CA and (T0325)P73.CB only 0.000 apart, marking (T0325)P73.CB as missing WARNING: atoms too close: (T0325)E78.CA and (T0325)E78.CB only 0.000 apart, marking (T0325)E78.CB as missing WARNING: atoms too close: (T0325)V80.CA and (T0325)V80.CB only 0.000 apart, marking (T0325)V80.CB as missing WARNING: atoms too close: (T0325)P81.CA and (T0325)P81.CB only 0.000 apart, marking (T0325)P81.CB as missing WARNING: atoms too close: (T0325)D85.CA and (T0325)D85.CB only 0.000 apart, marking (T0325)D85.CB as missing WARNING: atoms too close: (T0325)Y89.CA and (T0325)Y89.CB only 0.000 apart, marking (T0325)Y89.CB as missing WARNING: atoms too close: (T0325)E97.CA and (T0325)E97.CB only 0.000 apart, marking (T0325)E97.CB as missing WARNING: atoms too close: (T0325)I114.CA and (T0325)I114.CB only 0.000 apart, marking (T0325)I114.CB as missing WARNING: atoms too close: (T0325)M117.CA and (T0325)M117.CB only 0.000 apart, marking (T0325)M117.CB as missing WARNING: atoms too close: (T0325)D124.CA and (T0325)D124.CB only 0.000 apart, marking (T0325)D124.CB as missing WARNING: atoms too close: (T0325)R148.CA and (T0325)R148.CB only 0.000 apart, marking (T0325)R148.CB as missing WARNING: atoms too close: (T0325)Y150.CA and (T0325)Y150.CB only 0.000 apart, marking (T0325)Y150.CB as missing WARNING: atoms too close: (T0325)L154.CA and (T0325)L154.CB only 0.000 apart, marking (T0325)L154.CB as missing WARNING: atoms too close: (T0325)R155.CA and (T0325)R155.CB only 0.000 apart, marking (T0325)R155.CB as missing WARNING: atoms too close: (T0325)S158.CA and (T0325)S158.CB only 0.000 apart, marking (T0325)S158.CB as missing WARNING: atoms too close: (T0325)K164.CA and (T0325)K164.CB only 0.000 apart, marking (T0325)K164.CB as missing WARNING: atoms too close: (T0325)V173.CA and (T0325)V173.CB only 0.000 apart, marking (T0325)V173.CB as missing WARNING: atoms too close: (T0325)Y184.CA and (T0325)Y184.CB only 0.000 apart, marking (T0325)Y184.CB as missing WARNING: atoms too close: (T0325)I193.CA and (T0325)I193.CB only 0.000 apart, marking (T0325)I193.CB as missing WARNING: atoms too close: (T0325)L194.CA and (T0325)L194.CB only 0.000 apart, marking (T0325)L194.CB as missing WARNING: atoms too close: (T0325)Q222.CA and (T0325)Q222.CB only 0.000 apart, marking (T0325)Q222.CB as missing WARNING: atoms too close: (T0325)C228.CA and (T0325)C228.CB only 0.000 apart, marking (T0325)C228.CB as missing WARNING: atoms too close: (T0325)E236.CA and (T0325)E236.CB only 0.000 apart, marking (T0325)E236.CB as missing WARNING: atoms too close: (T0325)Q241.CA and (T0325)Q241.CB only 0.000 apart, marking (T0325)Q241.CB as missing WARNING: atoms too close: (T0325)K244.CA and (T0325)K244.CB only 0.000 apart, marking (T0325)K244.CB as missing WARNING: atoms too close: (T0325)E249.CA and (T0325)E249.CB only 0.000 apart, marking (T0325)E249.CB as missing WARNING: atoms too close: (T0325)L253.CA and (T0325)L253.CB only 0.000 apart, marking (T0325)L253.CB as missing WARNING: atoms too close: (T0325)M262.CA and (T0325)M262.CB only 0.000 apart, marking (T0325)M262.CB as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)S2.CA and (T0325)S2.CB only 0.000 apart, marking (T0325)S2.CB as missing WARNING: atoms too close: (T0325)I7.CA and (T0325)I7.CB only 0.000 apart, marking (T0325)I7.CB as missing WARNING: atoms too close: (T0325)D11.CA and (T0325)D11.CB only 0.000 apart, marking (T0325)D11.CB as missing WARNING: atoms too close: (T0325)F13.CA and (T0325)F13.CB only 0.000 apart, marking (T0325)F13.CB as missing WARNING: atoms too close: (T0325)Q21.CA and (T0325)Q21.CB only 0.000 apart, marking (T0325)Q21.CB as missing WARNING: atoms too close: (T0325)L38.CA and (T0325)L38.CB only 0.000 apart, marking (T0325)L38.CB as missing WARNING: atoms too close: (T0325)T40.CA and (T0325)T40.CB only 0.000 apart, marking (T0325)T40.CB as missing WARNING: atoms too close: (T0325)S41.CA and (T0325)S41.CB only 0.000 apart, marking (T0325)S41.CB as missing WARNING: atoms too close: (T0325)P56.CA and (T0325)P56.CB only 0.000 apart, marking (T0325)P56.CB as missing WARNING: atoms too close: (T0325)T65.CA and (T0325)T65.CB only 0.000 apart, marking (T0325)T65.CB as missing WARNING: atoms too close: (T0325)S82.CA and (T0325)S82.CB only 0.000 apart, marking (T0325)S82.CB as missing WARNING: atoms too close: (T0325)V84.CA and (T0325)V84.CB only 0.000 apart, marking (T0325)V84.CB as missing WARNING: atoms too close: (T0325)F90.CA and (T0325)F90.CB only 0.000 apart, marking (T0325)F90.CB as missing WARNING: atoms too close: (T0325)V105.CA and (T0325)V105.CB only 0.000 apart, marking (T0325)V105.CB as missing WARNING: atoms too close: (T0325)I114.CA and (T0325)I114.CB only 0.000 apart, marking (T0325)I114.CB as missing WARNING: atoms too close: (T0325)H125.CA and (T0325)H125.CB only 0.000 apart, marking (T0325)H125.CB as missing WARNING: atoms too close: (T0325)D127.CA and (T0325)D127.CB only 0.000 apart, marking (T0325)D127.CB as missing WARNING: atoms too close: (T0325)K138.CA and (T0325)K138.CB only 0.000 apart, marking (T0325)K138.CB as missing WARNING: atoms too close: (T0325)A147.CA and (T0325)A147.CB only 0.000 apart, marking (T0325)A147.CB as missing WARNING: atoms too close: (T0325)K149.CA and (T0325)K149.CB only 0.000 apart, marking (T0325)K149.CB as missing WARNING: atoms too close: (T0325)Y150.CA and (T0325)Y150.CB only 0.000 apart, marking (T0325)Y150.CB as missing WARNING: atoms too close: (T0325)K164.CA and (T0325)K164.CB only 0.000 apart, marking (T0325)K164.CB as missing WARNING: atoms too close: (T0325)Q171.CA and (T0325)Q171.CB only 0.000 apart, marking (T0325)Q171.CB as missing WARNING: atoms too close: (T0325)K186.CA and (T0325)K186.CB only 0.000 apart, marking (T0325)K186.CB as missing WARNING: atoms too close: (T0325)I188.CA and (T0325)I188.CB only 0.000 apart, marking (T0325)I188.CB as missing WARNING: atoms too close: (T0325)T190.CA and (T0325)T190.CB only 0.000 apart, marking (T0325)T190.CB as missing WARNING: atoms too close: (T0325)L194.CA and (T0325)L194.CB only 0.000 apart, marking (T0325)L194.CB as missing WARNING: atoms too close: (T0325)L196.CA and (T0325)L196.CB only 0.000 apart, marking (T0325)L196.CB as missing WARNING: atoms too close: (T0325)I210.CA and (T0325)I210.CB only 0.000 apart, marking (T0325)I210.CB as missing WARNING: atoms too close: (T0325)R231.CA and (T0325)R231.CB only 0.000 apart, marking (T0325)R231.CB as missing WARNING: atoms too close: (T0325)L238.CA and (T0325)L238.CB only 0.000 apart, marking (T0325)L238.CB as missing WARNING: atoms too close: (T0325)R250.CA and (T0325)R250.CB only 0.000 apart, marking (T0325)R250.CB as missing WARNING: atoms too close: (T0325)L253.CA and (T0325)L253.CB only 0.000 apart, marking (T0325)L253.CB as missing WARNING: atoms too close: (T0325)A255.CA and (T0325)A255.CB only 0.000 apart, marking (T0325)A255.CB as missing WARNING: atoms too close: (T0325)S259.CA and (T0325)S259.CB only 0.000 apart, marking (T0325)S259.CB as missing WARNING: atoms too close: (T0325)M262.CA and (T0325)M262.CB only 0.000 apart, marking (T0325)M262.CB as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)M1.CA and (T0325)M1.CB only 0.000 apart, marking (T0325)M1.CB as missing WARNING: atoms too close: (T0325)K4.CA and (T0325)K4.CB only 0.000 apart, marking (T0325)K4.CB as missing WARNING: atoms too close: (T0325)I24.CA and (T0325)I24.CB only 0.000 apart, marking (T0325)I24.CB as missing WARNING: atoms too close: (T0325)Y43.CA and (T0325)Y43.CB only 0.000 apart, marking (T0325)Y43.CB as missing WARNING: atoms too close: (T0325)R52.CA and (T0325)R52.CB only 0.000 apart, marking (T0325)R52.CB as missing WARNING: atoms too close: (T0325)P56.CA and (T0325)P56.CB only 0.000 apart, marking (T0325)P56.CB as missing WARNING: atoms too close: (T0325)L58.CA and (T0325)L58.CB only 0.000 apart, marking (T0325)L58.CB as missing WARNING: atoms too close: (T0325)A59.CA and (T0325)A59.CB only 0.000 apart, marking (T0325)A59.CB as missing WARNING: atoms too close: (T0325)I60.CA and (T0325)I60.CB only 0.000 apart, marking (T0325)I60.CB as missing WARNING: atoms too close: (T0325)T65.CA and (T0325)T65.CB only 0.000 apart, marking (T0325)T65.CB as missing WARNING: atoms too close: (T0325)R77.CA and (T0325)R77.CB only 0.000 apart, marking (T0325)R77.CB as missing WARNING: atoms too close: (T0325)E97.CA and (T0325)E97.CB only 0.000 apart, marking (T0325)E97.CB as missing WARNING: atoms too close: (T0325)N101.CA and (T0325)N101.CB only 0.000 apart, marking (T0325)N101.CB as missing WARNING: atoms too close: (T0325)I113.CA and (T0325)I113.CB only 0.000 apart, marking (T0325)I113.CB as missing WARNING: atoms too close: (T0325)F116.CA and (T0325)F116.CB only 0.000 apart, marking (T0325)F116.CB as missing WARNING: atoms too close: (T0325)M117.CA and (T0325)M117.CB only 0.000 apart, marking (T0325)M117.CB as missing WARNING: atoms too close: (T0325)R122.CA and (T0325)R122.CB only 0.000 apart, marking (T0325)R122.CB as missing WARNING: atoms too close: (T0325)D124.CA and (T0325)D124.CB only 0.000 apart, marking (T0325)D124.CB as missing WARNING: atoms too close: (T0325)H129.CA and (T0325)H129.CB only 0.000 apart, marking (T0325)H129.CB as missing WARNING: atoms too close: (T0325)A145.CA and (T0325)A145.CB only 0.000 apart, marking (T0325)A145.CB as missing WARNING: atoms too close: (T0325)L146.CA and (T0325)L146.CB only 0.000 apart, marking (T0325)L146.CB as missing WARNING: atoms too close: (T0325)K149.CA and (T0325)K149.CB only 0.000 apart, marking (T0325)K149.CB as missing WARNING: atoms too close: (T0325)Y150.CA and (T0325)Y150.CB only 0.000 apart, marking (T0325)Y150.CB as missing WARNING: atoms too close: (T0325)T163.CA and (T0325)T163.CB only 0.000 apart, marking (T0325)T163.CB as missing WARNING: atoms too close: (T0325)D177.CA and (T0325)D177.CB only 0.000 apart, marking (T0325)D177.CB as missing WARNING: atoms too close: (T0325)K186.CA and (T0325)K186.CB only 0.000 apart, marking (T0325)K186.CB as missing WARNING: atoms too close: (T0325)I193.CA and (T0325)I193.CB only 0.000 apart, marking (T0325)I193.CB as missing WARNING: atoms too close: (T0325)L197.CA and (T0325)L197.CB only 0.000 apart, marking (T0325)L197.CB as missing WARNING: atoms too close: (T0325)S203.CA and (T0325)S203.CB only 0.000 apart, marking (T0325)S203.CB as missing WARNING: atoms too close: (T0325)V207.CA and (T0325)V207.CB only 0.000 apart, marking (T0325)V207.CB as missing WARNING: atoms too close: (T0325)C212.CA and (T0325)C212.CB only 0.000 apart, marking (T0325)C212.CB as missing WARNING: atoms too close: (T0325)H213.CA and (T0325)H213.CB only 0.000 apart, marking (T0325)H213.CB as missing WARNING: atoms too close: (T0325)N223.CA and (T0325)N223.CB only 0.000 apart, marking (T0325)N223.CB as missing WARNING: atoms too close: (T0325)S225.CA and (T0325)S225.CB only 0.000 apart, marking (T0325)S225.CB as missing WARNING: atoms too close: (T0325)L238.CA and (T0325)L238.CB only 0.000 apart, marking (T0325)L238.CB as missing WARNING: atoms too close: (T0325)L253.CA and (T0325)L253.CB only 0.000 apart, marking (T0325)L253.CB as missing WARNING: atoms too close: (T0325)A255.CA and (T0325)A255.CB only 0.000 apart, marking (T0325)A255.CB as missing WARNING: atoms too close: (T0325)S259.CA and (T0325)S259.CB only 0.000 apart, marking (T0325)S259.CB as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)S2.CA and (T0325)S2.CB only 0.000 apart, marking (T0325)S2.CB as missing WARNING: atoms too close: (T0325)N9.CA and (T0325)N9.CB only 0.000 apart, marking (T0325)N9.CB as missing WARNING: atoms too close: (T0325)Q21.CA and (T0325)Q21.CB only 0.000 apart, marking (T0325)Q21.CB as missing WARNING: atoms too close: (T0325)I24.CA and (T0325)I24.CB only 0.000 apart, marking (T0325)I24.CB as missing WARNING: atoms too close: (T0325)M48.CA and (T0325)M48.CB only 0.000 apart, marking (T0325)M48.CB as missing WARNING: atoms too close: (T0325)A51.CA and (T0325)A51.CB only 0.000 apart, marking (T0325)A51.CB as missing WARNING: atoms too close: (T0325)A55.CA and (T0325)A55.CB only 0.000 apart, marking (T0325)A55.CB as missing WARNING: atoms too close: (T0325)L58.CA and (T0325)L58.CB only 0.000 apart, marking (T0325)L58.CB as missing WARNING: atoms too close: (T0325)I60.CA and (T0325)I60.CB only 0.000 apart, marking (T0325)I60.CB as missing WARNING: atoms too close: (T0325)L64.CA and (T0325)L64.CB only 0.000 apart, marking (T0325)L64.CB as missing WARNING: atoms too close: (T0325)Q70.CA and (T0325)Q70.CB only 0.000 apart, marking (T0325)Q70.CB as missing WARNING: atoms too close: (T0325)K72.CA and (T0325)K72.CB only 0.000 apart, marking (T0325)K72.CB as missing WARNING: atoms too close: (T0325)M79.CA and (T0325)M79.CB only 0.000 apart, marking (T0325)M79.CB as missing WARNING: atoms too close: (T0325)A87.CA and (T0325)A87.CB only 0.000 apart, marking (T0325)A87.CB as missing WARNING: atoms too close: (T0325)F90.CA and (T0325)F90.CB only 0.000 apart, marking (T0325)F90.CB as missing WARNING: atoms too close: (T0325)V100.CA and (T0325)V100.CB only 0.000 apart, marking (T0325)V100.CB as missing WARNING: atoms too close: (T0325)N101.CA and (T0325)N101.CB only 0.000 apart, marking (T0325)N101.CB as missing WARNING: atoms too close: (T0325)V105.CA and (T0325)V105.CB only 0.000 apart, marking (T0325)V105.CB as missing WARNING: atoms too close: (T0325)H125.CA and (T0325)H125.CB only 0.000 apart, marking (T0325)H125.CB as missing WARNING: atoms too close: (T0325)H130.CA and (T0325)H130.CB only 0.000 apart, marking (T0325)H130.CB as missing WARNING: atoms too close: (T0325)K149.CA and (T0325)K149.CB only 0.000 apart, marking (T0325)K149.CB as missing WARNING: atoms too close: (T0325)L152.CA and (T0325)L152.CB only 0.000 apart, marking (T0325)L152.CB as missing WARNING: atoms too close: (T0325)A157.CA and (T0325)A157.CB only 0.000 apart, marking (T0325)A157.CB as missing WARNING: atoms too close: (T0325)L169.CA and (T0325)L169.CB only 0.000 apart, marking (T0325)L169.CB as missing WARNING: atoms too close: (T0325)Q171.CA and (T0325)Q171.CB only 0.000 apart, marking (T0325)Q171.CB as missing WARNING: atoms too close: (T0325)T175.CA and (T0325)T175.CB only 0.000 apart, marking (T0325)T175.CB as missing WARNING: atoms too close: (T0325)L180.CA and (T0325)L180.CB only 0.000 apart, marking (T0325)L180.CB as missing WARNING: atoms too close: (T0325)Q182.CA and (T0325)Q182.CB only 0.000 apart, marking (T0325)Q182.CB as missing WARNING: atoms too close: (T0325)F183.CA and (T0325)F183.CB only 0.000 apart, marking (T0325)F183.CB as missing WARNING: atoms too close: (T0325)S189.CA and (T0325)S189.CB only 0.000 apart, marking (T0325)S189.CB as missing WARNING: atoms too close: (T0325)E206.CA and (T0325)E206.CB only 0.000 apart, marking (T0325)E206.CB as missing WARNING: atoms too close: (T0325)F208.CA and (T0325)F208.CB only 0.000 apart, marking (T0325)F208.CB as missing WARNING: atoms too close: (T0325)H213.CA and (T0325)H213.CB only 0.000 apart, marking (T0325)H213.CB as missing WARNING: atoms too close: (T0325)I232.CA and (T0325)I232.CB only 0.000 apart, marking (T0325)I232.CB as missing WARNING: atoms too close: (T0325)E236.CA and (T0325)E236.CB only 0.000 apart, marking (T0325)E236.CB as missing WARNING: atoms too close: (T0325)K244.CA and (T0325)K244.CB only 0.000 apart, marking (T0325)K244.CB as missing WARNING: atoms too close: (T0325)A246.CA and (T0325)A246.CB only 0.000 apart, marking (T0325)A246.CB as missing WARNING: atoms too close: (T0325)R250.CA and (T0325)R250.CB only 0.000 apart, marking (T0325)R250.CB as missing WARNING: atoms too close: (T0325)A255.CA and (T0325)A255.CB only 0.000 apart, marking (T0325)A255.CB as missing WARNING: atoms too close: (T0325)M262.CA and (T0325)M262.CB only 0.000 apart, marking (T0325)M262.CB as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 2, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 4, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 8, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 10, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 12, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 14, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 16, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 18, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 20, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 22, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 24, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 170, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 172, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 174, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 176, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)A157.CA and (T0325)D177.CA only 0.000 apart, marking (T0325)D177.CA as missing WARNING: atoms too close: (T0325)S158.CA and (T0325)E178.CA only 0.000 apart, marking (T0325)E178.CA as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 13, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 14, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 15, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 16, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 25, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 157, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 158, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 159, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 165, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 166, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 167, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 168, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 193, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 207, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 311, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 313, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 327, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 329, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 383, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 385, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 57, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 170, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 255, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 313, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 419, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 420, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 465, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 675, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 705, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 Skipped atom 139, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 221, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 311, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)N9.O and (T0325)A10.N only 0.000 apart, marking (T0325)A10.N as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)S2.O and (T0325)N3.N only 0.000 apart, marking (T0325)N3.N as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)A87.O and (T0325)G88.N only 0.000 apart, marking (T0325)G88.N as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0325)T33.O and (T0325)S34.N only 0.000 apart, marking (T0325)S34.N as missing WARNING: atoms too close: (T0325)A87.O and (T0325)G88.N only 0.000 apart, marking (T0325)G88.N as missing # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 903 has residue number 1 < previous residue 262 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 32 < previous residue 262 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0325 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 254 undertaker: AlignmentsContactsCommands.cc:191: std::vector > GetAlignmentsContactsConstraintsPool(const ConformationPool&, std::ostream*, WeightStyle, double): Assertion `weight>=0' failed. Probability sum: -475.3712, CN propb: -475.3712 weights: 0.1860 constraints: 1030 # command:Found ConstraintSet # PrintContacts align.constraints_v3 Number of constraints in align.constraints 1030 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_v3 Number of constraints in align.constraints.bonus 1030 # command:Found ConstraintSet # PrintContacts rejected.constraints_v3 Number of constraints in rejected.constraints 6676 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_v3 Number of constraints in rejected.constraints.bonus 6676 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_v3 Number of constraints in noncontact.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_v3 Number of constraints in noncontact.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_v3 Number of constraints in all.constraints 7706 # command: