# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0324/
# command:# Making conformation for sequence T0324 numbered 1 through 208
Created new target T0324 from T0324.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0324/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0324//projects/compbio/experiments/protein-predict/casp7/T0324/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0324//projects/compbio/experiments/protein-predict/casp7/T0324/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0324/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0324/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)I160.CB) [> 4.2811 = 7.1351 < 9.2757] w=1.0000 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)F159.CB) [> 2.8756 = 4.7926 < 6.2304] w=1.0000 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)L158.CB) [> 4.1660 = 6.9434 < 9.0264] w=1.0000 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)L158.CB) [> 2.9630 = 4.9383 < 6.4198] w=1.0000 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)D162.CB) [> 3.0601 = 5.1002 < 6.6303] w=0.9857 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)G161.CA) [> 2.8803 = 4.8005 < 6.2407] w=0.9857 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)I160.CB) [> 3.5905 = 5.9842 < 7.7795] w=0.9857 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)D162.CB) [> 2.8540 = 4.7566 < 6.1836] w=0.9857 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)I160.CB) [> 4.1027 = 6.8377 < 8.8891] w=0.9787 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)A157.CB) [> 3.6872 = 6.1453 < 7.9889] w=0.9765 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)A157.CB) [> 4.4211 = 7.3685 < 9.5790] w=0.9765 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)L158.CB) [> 4.3597 = 7.2662 < 9.4461] w=0.9712 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)N156.CB) [> 3.8708 = 6.4513 < 8.3867] w=0.9555 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)A157.CB) [> 2.8143 = 4.6905 < 6.0977] w=0.9555 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)G178.CA) [> 3.9077 = 6.5129 < 8.4668] w=0.9218 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)G178.CA) [> 3.9858 = 6.6430 < 8.6359] w=0.9218 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)A170.CB) [> 2.6440 = 4.4067 < 5.7287] w=0.9127 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)N156.CB) [> 2.6746 = 4.4576 < 5.7949] w=0.8985 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)G101.CA) [> 3.1916 = 5.3193 < 6.9151] w=0.8930 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)G101.CA) [> 4.1181 = 6.8635 < 8.9225] w=0.8930 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)L100.CB) [> 3.2381 = 5.3968 < 7.0158] w=0.8930 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)L98.CB) [> 3.4199 = 5.6999 < 7.4099] w=0.8930 to align
# Constraint # added constraint: constraint((T0324)L143.CB, (T0324)T169.CB) [> 3.4468 = 5.7446 < 7.4680] w=0.8842 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)V150.CB) [> 3.3960 = 5.6601 < 7.3581] w=0.8842 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)F177.CB) [> 3.2104 = 5.3506 < 6.9558] w=0.8790 to align
# Constraint # added constraint: constraint((T0324)F91.CB, (T0324)L100.CB) [> 3.6669 = 6.1115 < 7.9449] w=0.8788 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)R99.CB) [> 4.3633 = 7.2721 < 9.4537] w=0.8716 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)R99.CB) [> 2.6481 = 4.4135 < 5.7375] w=0.8642 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)V152.CB) [> 2.9584 = 4.9307 < 6.4099] w=0.8628 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)L94.CB) [> 3.5396 = 5.8992 < 7.6690] w=0.8574 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)I87.CB) [> 3.2557 = 5.4262 < 7.0541] w=0.8574 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)A157.CB) [> 4.3312 = 7.2186 < 9.3842] w=0.8557 to align
# Constraint # added constraint: constraint((T0324)L147.CB, (T0324)A157.CB) [> 3.7403 = 6.2337 < 8.1039] w=0.8557 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)G178.CA) [> 3.2273 = 5.3788 < 6.9924] w=0.8506 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)A180.CB) [> 3.4439 = 5.7398 < 7.4617] w=0.8505 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)V103.CB) [> 3.2349 = 5.3914 < 7.0089] w=0.8502 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)L98.CB) [> 3.8609 = 6.4349 < 8.3653] w=0.8485 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)A180.CB) [> 3.5866 = 5.9776 < 7.7709] w=0.8433 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)D176.CB) [> 2.8380 = 4.7300 < 6.1491] w=0.8365 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)T104.CB) [> 4.1166 = 6.8610 < 8.9193] w=0.8359 to align
# Constraint # added constraint: constraint((T0324)L143.CB, (T0324)A173.CB) [> 2.9845 = 4.9741 < 6.4663] w=0.8341 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)G178.CA) [> 3.9794 = 6.6323 < 8.6220] w=0.8292 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)D162.CB) [> 3.7923 = 6.3205 < 8.2166] w=0.8288 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)G161.CA) [> 2.4229 = 4.0382 < 5.2496] w=0.8288 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)I160.CB) [> 3.9380 = 6.5634 < 8.5324] w=0.8288 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)G161.CA) [> 4.2661 = 7.1102 < 9.2432] w=0.8288 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)I160.CB) [> 3.1031 = 5.1719 < 6.7235] w=0.8288 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)G101.CA) [> 4.2944 = 7.1574 < 9.3047] w=0.8285 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)A146.CB) [> 3.6759 = 6.1265 < 7.9645] w=0.8200 to align
# Constraint # added constraint: constraint((T0324)A157.CB, (T0324)D176.CB) [> 4.0447 = 6.7411 < 8.7635] w=0.8199 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)L179.CB) [> 3.7898 = 6.3163 < 8.2113] w=0.8148 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)L100.CB) [> 4.4401 = 7.4002 < 9.6202] w=0.8142 to align
# Constraint # added constraint: constraint((T0324)P140.CB, (T0324)T169.CB) [> 3.4529 = 5.7548 < 7.4812] w=0.8129 to align
# Constraint # added constraint: constraint((T0324)P154.CB, (T0324)N174.CB) [> 2.8576 = 4.7626 < 6.1914] w=0.8129 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)F177.CB) [> 4.3333 = 7.2221 < 9.3888] w=0.8112 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)R99.CB) [> 4.0303 = 6.7171 < 8.7323] w=0.8072 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)L98.CB) [> 3.6605 = 6.1008 < 7.9310] w=0.8072 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)T104.CB) [> 2.6605 = 4.4341 < 5.7644] w=0.7932 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)I102.CB) [> 3.4611 = 5.7686 < 7.4992] w=0.7932 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)I102.CB) [> 4.3434 = 7.2390 < 9.4108] w=0.7864 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)L83.CB) [> 3.8030 = 6.3383 < 8.2399] w=0.7861 to align
# Constraint # added constraint: constraint((T0324)A157.CB, (T0324)V175.CB) [> 2.9111 = 4.8518 < 6.3074] w=0.7842 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)D176.CB) [> 4.0971 = 6.8285 < 8.8770] w=0.7723 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)L83.CB) [> 3.6229 = 6.0382 < 7.8496] w=0.7718 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)V175.CB) [> 3.0150 = 5.0251 < 6.5326] w=0.7653 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)V175.CB) [> 3.9826 = 6.6377 < 8.6290] w=0.7653 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)S163.CB) [> 4.3048 = 7.1747 < 9.3270] w=0.7646 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)D166.CB) [> 3.4935 = 5.8224 < 7.5691] w=0.7626 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)I81.CB) [> 3.2903 = 5.4838 < 7.1290] w=0.7575 to align
# Constraint # added constraint: constraint((T0324)P140.CB, (T0324)A172.CB) [> 3.0436 = 5.0727 < 6.5945] w=0.7557 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)M124.CB) [> 3.0765 = 5.1274 < 6.6657] w=0.7554 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)G161.CA) [> 4.5761 = 7.6269 < 9.9150] w=0.7509 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)A180.CB) [> 3.0653 = 5.1088 < 6.6415] w=0.7507 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)T127.CB) [> 3.9262 = 6.5437 < 8.5069] w=0.7434 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)D162.CB) [> 4.5685 = 7.6141 < 9.8983] w=0.7434 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)M124.CB) [> 3.4095 = 5.6825 < 7.3873] w=0.7412 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)I128.CB) [> 4.4213 = 7.3689 < 9.5795] w=0.7365 to align
# Constraint # added constraint: constraint((T0324)P154.CB, (T0324)A173.CB) [> 3.4121 = 5.6869 < 7.3930] w=0.7344 to align
# Constraint # added constraint: constraint((T0324)L143.CB, (T0324)F159.CB) [> 4.2012 = 7.0021 < 9.1027] w=0.7273 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)V152.CB) [> 3.2305 = 5.3842 < 6.9994] w=0.7273 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)N156.CB) [> 3.6256 = 6.0427 < 7.8556] w=0.7273 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)P142.CB) [> 3.5932 = 5.9886 < 7.7852] w=0.7273 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)V181.CB) [> 3.9884 = 6.6473 < 8.6415] w=0.7234 to align
# Constraint # added constraint: constraint((T0324)L83.CB, (T0324)Y118.CB) [> 3.4700 = 5.7833 < 7.5183] w=0.7231 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)Y84.CB) [> 3.7412 = 6.2353 < 8.1058] w=0.7220 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)G101.CA) [> 3.7848 = 6.3080 < 8.2004] w=0.7218 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)I102.CB) [> 3.2496 = 5.4160 < 7.0408] w=0.7218 to align
# Constraint # added constraint: constraint((T0324)Q155.CB, (T0324)N174.CB) [> 3.3615 = 5.6025 < 7.2832] w=0.7201 to align
# Constraint # added constraint: constraint((T0324)N16.CB, (T0324)Y84.CB) [> 3.6493 = 6.0821 < 7.9067] w=0.7161 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)T127.CB) [> 2.9427 = 4.9046 < 6.3760] w=0.7149 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)I102.CB) [> 4.2429 = 7.0716 < 9.1930] w=0.7147 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)A194.CB) [> 3.4810 = 5.8017 < 7.5422] w=0.7080 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)H195.CB) [> 4.0507 = 6.7512 < 8.7766] w=0.7080 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)I128.CB) [> 3.9358 = 6.5596 < 8.5275] w=0.7080 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)Y84.CB) [> 3.9273 = 6.5455 < 8.5091] w=0.7077 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)H195.CB) [> 2.9651 = 4.9418 < 6.4244] w=0.7009 to align
# Constraint # added constraint: constraint((T0324)A180.CB, (T0324)F197.CB) [> 3.4713 = 5.7855 < 7.5211] w=0.7008 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)V103.CB) [> 3.8931 = 6.4884 < 8.4350] w=0.7004 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)T104.CB) [> 3.8863 = 6.4773 < 8.4204] w=0.7004 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)V126.CB) [> 2.9739 = 4.9564 < 6.4433] w=0.6993 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)L179.CB) [> 4.1903 = 6.9839 < 9.0790] w=0.6937 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)L100.CB) [> 4.2407 = 7.0678 < 9.1881] w=0.6826 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)I128.CB) [> 2.9621 = 4.9369 < 6.4180] w=0.6795 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)L111.CB) [> 3.8647 = 6.4411 < 8.3734] w=0.6791 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)S129.CB) [> 3.5556 = 5.9261 < 7.7039] w=0.6723 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)A180.CB) [> 3.3367 = 5.5611 < 7.2295] w=0.6652 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)F159.CB) [> 4.6915 = 7.8191 < 10.1648] w=0.6648 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)V126.CB) [> 4.1943 = 6.9904 < 9.0876] w=0.6636 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)A146.CB) [> 3.4214 = 5.7023 < 7.4130] w=0.6632 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)R196.CB) [> 3.9717 = 6.6195 < 8.6053] w=0.6582 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)V103.CB) [> 4.4118 = 7.3531 < 9.5590] w=0.6577 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)M124.CB) [> 3.0058 = 5.0097 < 6.5126] w=0.6558 to align
# Constraint # added constraint: constraint((T0324)E167.CB, (T0324)F177.CB) [> 2.9641 = 4.9402 < 6.4223] w=0.6492 to align
# Constraint # added constraint: constraint((T0324)P154.CB, (T0324)V175.CB) [> 3.0504 = 5.0841 < 6.6093] w=0.6490 to align
# Constraint # added constraint: constraint((T0324)I128.CB, (T0324)A146.CB) [> 3.5295 = 5.8825 < 7.6472] w=0.6490 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)A157.CB) [> 4.0918 = 6.8196 < 8.8655] w=0.6419 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)F197.CB) [> 4.1101 = 6.8501 < 8.9051] w=0.6368 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)V193.CB) [> 2.5954 = 4.3257 < 5.6234] w=0.6346 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)R196.CB) [> 3.0052 = 5.0087 < 6.5113] w=0.6296 to align
# Constraint # added constraint: constraint((T0324)L90.CB, (T0324)P200.CB) [> 2.9898 = 4.9831 < 6.4780] w=0.6272 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)I203.CB) [> 3.8209 = 6.3682 < 8.2787] w=0.6251 to align
# Constraint # added constraint: constraint((T0324)L143.CB, (T0324)V175.CB) [> 3.9209 = 6.5348 < 8.4952] w=0.6241 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)L179.CB) [> 4.3478 = 7.2463 < 9.4201] w=0.6237 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)F197.CB) [> 4.2608 = 7.1014 < 9.2318] w=0.6225 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)L98.CB) [> 4.0664 = 6.7773 < 8.8104] w=0.6210 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)V193.CB) [> 3.1975 = 5.3292 < 6.9280] w=0.6204 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)L143.CB) [> 3.7393 = 6.2322 < 8.1019] w=0.6204 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)A125.CB) [> 3.4615 = 5.7691 < 7.4998] w=0.6201 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)L143.CB) [> 3.8142 = 6.3570 < 8.2642] w=0.6165 to align
# Constraint # added constraint: constraint((T0324)P138.CB, (T0324)Q168.CB) [> 3.1907 = 5.3179 < 6.9132] w=0.6133 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)A130.CB) [> 4.2054 = 7.0090 < 9.1117] w=0.6083 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)V175.CB) [> 4.3797 = 7.2994 < 9.4892] w=0.6081 to align
# Constraint # added constraint: constraint((T0324)P138.CB, (T0324)S165.CB) [> 3.2769 = 5.4615 < 7.0999] w=0.6062 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)F177.CB) [> 4.5597 = 7.5995 < 9.8793] w=0.6061 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)A125.CB) [> 3.3650 = 5.6083 < 7.2908] w=0.6058 to align
# Constraint # added constraint: constraint((T0324)R99.CB, (T0324)A125.CB) [> 3.1191 = 5.1984 < 6.7579] w=0.6058 to align
# Constraint # added constraint: constraint((T0324)I87.CB, (T0324)P200.CB) [> 3.3232 = 5.5387 < 7.2003] w=0.6037 to align
# Constraint # added constraint: constraint((T0324)L144.CB, (T0324)A173.CB) [> 3.8991 = 6.4985 < 8.4481] w=0.6025 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)I128.CB) [> 4.2775 = 7.1291 < 9.2678] w=0.6011 to align
# Constraint # added constraint: constraint((T0324)F177.CB, (T0324)A194.CB) [> 3.1940 = 5.3233 < 6.9203] w=0.6010 to align
# Constraint # added constraint: constraint((T0324)L90.CB, (T0324)I203.CB) [> 3.6753 = 6.1255 < 7.9631] w=0.5990 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)T169.CB) [> 3.5186 = 5.8643 < 7.6236] w=0.5990 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)F197.CB) [> 4.1482 = 6.9136 < 8.9877] w=0.5939 to align
# Constraint # added constraint: constraint((T0324)P138.CB, (T0324)T169.CB) [> 2.7474 = 4.5789 < 5.9526] w=0.5920 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)I102.CB) [> 4.4921 = 7.4868 < 9.7328] w=0.5863 to align
# Constraint # added constraint: constraint((T0324)L90.CB, (T0324)L204.CB) [> 3.6685 = 6.1142 < 7.9485] w=0.5823 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)A130.CB) [> 3.3951 = 5.6585 < 7.3561] w=0.5798 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)F177.CB) [> 4.5258 = 7.5430 < 9.8058] w=0.5797 to align
# Constraint # added constraint: constraint((T0324)F177.CB, (T0324)H195.CB) [> 4.2881 = 7.1469 < 9.2910] w=0.5776 to align
# Constraint # added constraint: constraint((T0324)F91.CB, (T0324)F120.CB) [> 3.9578 = 6.5964 < 8.5753] w=0.5772 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)Q106.CB) [> 3.8656 = 6.4427 < 8.3755] w=0.5771 to align
# Constraint # added constraint: constraint((T0324)G86.CA, (T0324)P200.CB) [> 3.1258 = 5.2097 < 6.7726] w=0.5752 to align
# Constraint # added constraint: constraint((T0324)Y84.CB, (T0324)P200.CB) [> 3.7049 = 6.1749 < 8.0273] w=0.5681 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)D176.CB) [> 4.0238 = 6.7064 < 8.7183] w=0.5635 to align
# Constraint # added constraint: constraint((T0324)V126.CB, (T0324)V150.CB) [> 3.7843 = 6.3071 < 8.1992] w=0.5563 to align
# Constraint # added constraint: constraint((T0324)K137.CB, (T0324)S165.CB) [> 3.2567 = 5.4278 < 7.0562] w=0.5563 to align
# Constraint # added constraint: constraint((T0324)D139.CB, (T0324)T169.CB) [> 3.9216 = 6.5359 < 8.4967] w=0.5563 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)T127.CB) [> 4.4793 = 7.4655 < 9.7052] w=0.5509 to align
# Constraint # added constraint: constraint((T0324)E167.CB, (T0324)G178.CA) [> 4.2012 = 7.0021 < 9.1027] w=0.5493 to align
# Constraint # added constraint: constraint((T0324)V126.CB, (T0324)K149.CB) [> 3.3159 = 5.5265 < 7.1845] w=0.5492 to align
# Constraint # added constraint: constraint((T0324)I128.CB, (T0324)T145.CB) [> 3.4886 = 5.8143 < 7.5586] w=0.5420 to align
# Constraint # added constraint: constraint((T0324)F177.CB, (T0324)V193.CB) [> 3.0126 = 5.0210 < 6.5273] w=0.5419 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)S105.CB) [> 4.3473 = 7.2455 < 9.4191] w=0.5414 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)F159.CB) [> 4.4913 = 7.4855 < 9.7312] w=0.5370 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)Y84.CB) [> 4.3167 = 7.1945 < 9.3528] w=0.5365 to align
# Constraint # added constraint: constraint((T0324)T133.CB, (T0324)P142.CB) [> 3.5489 = 5.9148 < 7.6892] w=0.5349 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)A146.CB) [> 3.8543 = 6.4239 < 8.3511] w=0.5345 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)R123.CB) [> 3.6920 = 6.1533 < 7.9993] w=0.5240 to align
# Constraint # added constraint: constraint((T0324)R108.CB, (T0324)S129.CB) [> 3.0093 = 5.0155 < 6.5201] w=0.5084 to align
# Constraint # added constraint: constraint((T0324)D176.CB, (T0324)A194.CB) [> 3.2474 = 5.4124 < 7.0361] w=0.5062 to align
# Constraint # added constraint: constraint((T0324)Q106.CB, (T0324)S129.CB) [> 3.6414 = 6.0689 < 7.8896] w=0.4993 to align
# Constraint # added constraint: constraint((T0324)T88.CB, (T0324)F120.CB) [> 3.9870 = 6.6450 < 8.6385] w=0.4989 to align
# Constraint # added constraint: constraint((T0324)H195.CB, (T0324)L206.CB) [> 3.4519 = 5.7531 < 7.4791] w=0.4920 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)W182.CB) [> 3.4131 = 5.6885 < 7.3951] w=0.4870 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)K137.CB) [> 4.1920 = 6.9866 < 9.0826] w=0.4849 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)A173.CB) [> 3.3733 = 5.6222 < 7.3089] w=0.4847 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)F207.CB) [> 4.0376 = 6.7293 < 8.7481] w=0.4765 to align
# Constraint # added constraint: constraint((T0324)W182.CB, (T0324)K199.CB) [> 3.8642 = 6.4404 < 8.3725] w=0.4755 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)L206.CB) [> 4.2331 = 7.0551 < 9.1717] w=0.4753 to align
# Constraint # added constraint: constraint((T0324)I128.CB, (T0324)K149.CB) [> 3.9392 = 6.5652 < 8.5348] w=0.4707 to align
# Constraint # added constraint: constraint((T0324)A130.CB, (T0324)P142.CB) [> 3.7389 = 6.2314 < 8.1009] w=0.4707 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)L147.CB) [> 4.0012 = 6.6686 < 8.6692] w=0.4706 to align
# Constraint # added constraint: constraint((T0324)Q155.CB, (T0324)V175.CB) [> 4.2946 = 7.1576 < 9.3049] w=0.4703 to align
# Constraint # added constraint: constraint((T0324)A180.CB, (T0324)P200.CB) [> 3.9188 = 6.5314 < 8.4908] w=0.4682 to align
# Constraint # added constraint: constraint((T0324)L111.CB, (T0324)T127.CB) [> 3.5032 = 5.8387 < 7.5902] w=0.4657 to align
# Constraint # added constraint: constraint((T0324)F91.CB, (T0324)R123.CB) [> 2.8255 = 4.7092 < 6.1219] w=0.4588 to align
# Constraint # added constraint: constraint((T0324)E112.CB, (T0324)T127.CB) [> 3.9950 = 6.6584 < 8.6559] w=0.4586 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)F120.CB) [> 4.2179 = 7.0299 < 9.1389] w=0.4565 to align
# Constraint # added constraint: constraint((T0324)G86.CA, (T0324)K199.CB) [> 4.0448 = 6.7413 < 8.7637] w=0.4564 to align
# Constraint # added constraint: constraint((T0324)L90.CB, (T0324)L201.CB) [> 3.6673 = 6.1121 < 7.9457] w=0.4564 to align
# Constraint # added constraint: constraint((T0324)R107.CB, (T0324)S129.CB) [> 3.6223 = 6.0372 < 7.8484] w=0.4564 to align
# Constraint # added constraint: constraint((T0324)L111.CB, (T0324)S129.CB) [> 3.5735 = 5.9558 < 7.7425] w=0.4514 to align
# Constraint # added constraint: constraint((T0324)E167.CB, (T0324)V193.CB) [> 3.2624 = 5.4373 < 7.0685] w=0.4494 to align
# Constraint # added constraint: constraint((T0324)A146.CB, (T0324)A157.CB) [> 4.3874 = 7.3124 < 9.5061] w=0.4493 to align
# Constraint # added constraint: constraint((T0324)Q93.CB, (T0324)L204.CB) [> 3.3036 = 5.5060 < 7.1578] w=0.4492 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)A170.CB) [> 4.4364 = 7.3939 < 9.6121] w=0.4492 to align
# Constraint # added constraint: constraint((T0324)L83.CB, (T0324)F120.CB) [> 3.7720 = 6.2867 < 8.1727] w=0.4490 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)G114.CA) [> 4.4075 = 7.3459 < 9.5497] w=0.4434 to align
# Constraint # added constraint: constraint((T0324)A157.CB, (T0324)A173.CB) [> 3.6811 = 6.1352 < 7.9758] w=0.4419 to align
# Constraint # added constraint: constraint((T0324)Q155.CB, (T0324)D176.CB) [> 4.2914 = 7.1523 < 9.2980] w=0.4419 to align
# Constraint # added constraint: constraint((T0324)T88.CB, (T0324)Y118.CB) [> 4.0563 = 6.7605 < 8.7886] w=0.4366 to align
# Constraint # added constraint: constraint((T0324)I128.CB, (T0324)P142.CB) [> 3.4282 = 5.7137 < 7.4279] w=0.4351 to align
# Constraint # added constraint: constraint((T0324)F91.CB, (T0324)M124.CB) [> 4.4529 = 7.4215 < 9.6479] w=0.4347 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)L100.CB) [> 4.6514 = 7.7523 < 10.0779] w=0.4336 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)A180.CB) [> 4.3339 = 7.2231 < 9.3900] w=0.4300 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)V126.CB) [> 4.4889 = 7.4815 < 9.7259] w=0.4286 to align
# Constraint # added constraint: constraint((T0324)P138.CB, (T0324)D166.CB) [> 3.9609 = 6.6015 < 8.5820] w=0.4279 to align
# Constraint # added constraint: constraint((T0324)Y78.CB, (T0324)E110.CB) [> 3.8202 = 6.3670 < 8.2771] w=0.4264 to align
# Constraint # added constraint: constraint((T0324)M115.CB, (T0324)T127.CB) [> 4.1012 = 6.8353 < 8.8859] w=0.4229 to align
# Constraint # added constraint: constraint((T0324)R99.CB, (T0324)V126.CB) [> 4.5105 = 7.5174 < 9.7727] w=0.4208 to align
# Constraint # added constraint: constraint((T0324)I87.CB, (T0324)F120.CB) [> 4.2144 = 7.0240 < 9.1312] w=0.4205 to align
# Constraint # added constraint: constraint((T0324)P138.CB, (T0324)A172.CB) [> 4.0104 = 6.6840 < 8.6892] w=0.4137 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)G183.CA) [> 3.6410 = 6.0683 < 7.8888] w=0.4136 to align
# Constraint # added constraint: constraint((T0324)M115.CB, (T0324)M124.CB) [> 4.0311 = 6.7186 < 8.7341] w=0.4128 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)F159.CB) [> 4.5380 = 7.5633 < 9.8322] w=0.4085 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)D166.CB) [> 4.6348 = 7.7247 < 10.0421] w=0.4062 to align
# Constraint # added constraint: constraint((T0324)P95.CB, (T0324)R123.CB) [> 3.7787 = 6.2978 < 8.1871] w=0.3963 to align
# Constraint # added constraint: constraint((T0324)R108.CB, (T0324)D131.CB) [> 3.4678 = 5.7796 < 7.5135] w=0.3923 to align
# Constraint # added constraint: constraint((T0324)F197.CB, (T0324)L206.CB) [> 3.8280 = 6.3800 < 8.2940] w=0.3923 to align
# Constraint # added constraint: constraint((T0324)S17.CB, (T0324)I81.CB) [> 3.5763 = 5.9606 < 7.7488] w=0.3918 to align
# Constraint # added constraint: constraint((T0324)V126.CB, (T0324)A146.CB) [> 3.7336 = 6.2226 < 8.0894] w=0.3887 to align
# Constraint # added constraint: constraint((T0324)D176.CB, (T0324)H195.CB) [> 4.4864 = 7.4773 < 9.7205] w=0.3871 to align
# Constraint # added constraint: constraint((T0324)Q171.CB, (T0324)K192.CB) [> 3.7927 = 6.3211 < 8.2175] w=0.3852 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)S163.CB) [> 4.5150 = 7.5250 < 9.7825] w=0.3852 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)Y118.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.3811 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)F207.CB) [> 3.5919 = 5.9864 < 7.7824] w=0.3780 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)P200.CB) [> 4.4444 = 7.4073 < 9.6295] w=0.3730 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)M184.CB) [> 3.5048 = 5.8414 < 7.5938] w=0.3729 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)S129.CB) [> 4.5401 = 7.5669 < 9.8369] w=0.3693 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)D185.CB) [> 3.2517 = 5.4195 < 7.0453] w=0.3658 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)F159.CB) [> 4.5629 = 7.6048 < 9.8863] w=0.3653 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)P200.CB) [> 4.2071 = 7.0119 < 9.1154] w=0.3565 to align
# Constraint # added constraint: constraint((T0324)L144.CB, (T0324)P154.CB) [> 4.0780 = 6.7967 < 8.8357] w=0.3564 to align
# Constraint # added constraint: constraint((T0324)V164.CB, (T0324)L179.CB) [> 3.9276 = 6.5460 < 8.5097] w=0.3516 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)P200.CB) [> 4.3447 = 7.2413 < 9.4136] w=0.3494 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)F207.CB) [> 4.3414 = 7.2357 < 9.4064] w=0.3494 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)F66.CB) [> 3.3860 = 5.6433 < 7.3363] w=0.3422 to align
# Constraint # added constraint: constraint((T0324)L94.CB, (T0324)L204.CB) [> 3.9316 = 6.5526 < 8.5184] w=0.3373 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)M115.CB) [> 4.4970 = 7.4950 < 9.7435] w=0.3361 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)I203.CB) [> 4.4102 = 7.3503 < 9.5553] w=0.3352 to align
# Constraint # added constraint: constraint((T0324)G178.CA, (T0324)I203.CB) [> 4.4565 = 7.4275 < 9.6558] w=0.3348 to align
# Constraint # added constraint: constraint((T0324)V24.CB, (T0324)V73.CB) [> 3.0016 = 5.0026 < 6.5034] w=0.3276 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)T169.CB) [> 4.1461 = 6.9102 < 8.9832] w=0.3208 to align
# Constraint # added constraint: constraint((T0324)A170.CB, (T0324)V193.CB) [> 4.0231 = 6.7052 < 8.7168] w=0.3208 to align
# Constraint # added constraint: constraint((T0324)D166.CB, (T0324)F177.CB) [> 4.3440 = 7.2400 < 9.4121] w=0.3138 to align
# Constraint # added constraint: constraint((T0324)L94.CB, (T0324)F207.CB) [> 4.3033 = 7.1722 < 9.3239] w=0.3137 to align
# Constraint # added constraint: constraint((T0324)V164.CB, (T0324)H190.CB) [> 3.9182 = 6.5304 < 8.4895] w=0.3087 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)D185.CB) [> 3.7929 = 6.3215 < 8.2180] w=0.3066 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)I87.CB) [> 4.2417 = 7.0695 < 9.1903] w=0.3016 to align
# Constraint # added constraint: constraint((T0324)I81.CB, (T0324)S117.CB) [> 3.6653 = 6.1088 < 7.9414] w=0.2996 to align
# Constraint # added constraint: constraint((T0324)A157.CB, (T0324)N174.CB) [> 3.5802 = 5.9670 < 7.7571] w=0.2994 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)V73.CB) [> 3.8547 = 6.4246 < 8.3519] w=0.2979 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)M124.CB) [> 4.4272 = 7.3787 < 9.5923] w=0.2960 to align
# Constraint # added constraint: constraint((T0324)V24.CB, (T0324)Y70.CB) [> 3.3496 = 5.5827 < 7.2575] w=0.2924 to align
# Constraint # added constraint: constraint((T0324)L94.CB, (T0324)I203.CB) [> 4.3326 = 7.2210 < 9.3873] w=0.2853 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)Y70.CB) [> 3.3250 = 5.5416 < 7.2041] w=0.2853 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)F91.CB) [> 4.4700 = 7.4500 < 9.6850] w=0.2802 to align
# Constraint # added constraint: constraint((T0324)A20.CB, (T0324)H77.CB) [> 3.1351 = 5.2251 < 6.7926] w=0.2795 to align
# Constraint # added constraint: constraint((T0324)T31.CB, (T0324)Q69.CB) [> 3.7881 = 6.3135 < 8.2076] w=0.2781 to align
# Constraint # added constraint: constraint((T0324)V24.CB, (T0324)H77.CB) [> 3.5766 = 5.9610 < 7.7493] w=0.2719 to align
# Constraint # added constraint: constraint((T0324)I87.CB, (T0324)Y118.CB) [> 4.2182 = 7.0303 < 9.1394] w=0.2705 to align
# Constraint # added constraint: constraint((T0324)V24.CB, (T0324)M74.CB) [> 2.9957 = 4.9928 < 6.4906] w=0.2699 to align
# Constraint # added constraint: constraint((T0324)L29.CB, (T0324)L56.CB) [> 3.7778 = 6.2964 < 8.1853] w=0.2698 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)S129.CB) [> 4.2716 = 7.1193 < 9.2551] w=0.2694 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)W182.CB) [> 3.6479 = 6.0799 < 7.9039] w=0.2660 to align
# Constraint # added constraint: constraint((T0324)L98.CB, (T0324)F207.CB) [> 4.3203 = 7.2006 < 9.3607] w=0.2639 to align
# Constraint # added constraint: constraint((T0324)Y32.CB, (T0324)F66.CB) [> 4.1376 = 6.8960 < 8.9648] w=0.2639 to align
# Constraint # added constraint: constraint((T0324)V164.CB, (T0324)P186.CB) [> 4.0147 = 6.6911 < 8.6985] w=0.2638 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)Y70.CB) [> 4.0082 = 6.6803 < 8.6844] w=0.2635 to align
# Constraint # added constraint: constraint((T0324)Q106.CB, (T0324)A130.CB) [> 3.8379 = 6.3965 < 8.3154] w=0.2627 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)A170.CB) [> 4.5390 = 7.5651 < 9.8346] w=0.2568 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)M115.CB) [> 4.5433 = 7.5721 < 9.8437] w=0.2552 to align
# Constraint # added constraint: constraint((T0324)A20.CB, (T0324)Q80.CB) [> 3.1935 = 5.3225 < 6.9193] w=0.2510 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)E97.CB) [> 4.3439 = 7.2397 < 9.4117] w=0.2510 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)L56.CB) [> 3.7712 = 6.2853 < 8.1709] w=0.2502 to align
# Constraint # added constraint: constraint((T0324)L83.CB, (T0324)P119.CB) [> 3.9348 = 6.5581 < 8.5255] w=0.2497 to align
# Constraint # added constraint: constraint((T0324)K137.CB, (T0324)S163.CB) [> 4.5381 = 7.5636 < 9.8326] w=0.2460 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)I87.CB) [> 4.5433 = 7.5722 < 9.8438] w=0.2446 to align
# Constraint # added constraint: constraint((T0324)L83.CB, (T0324)G114.CA) [> 4.3629 = 7.2714 < 9.4529] w=0.2435 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)G183.CA) [> 2.9853 = 4.9755 < 6.4681] w=0.2425 to align
# Constraint # added constraint: constraint((T0324)F177.CB, (T0324)K192.CB) [> 3.9829 = 6.6381 < 8.6295] w=0.2423 to align
# Constraint # added constraint: constraint((T0324)R107.CB, (T0324)A130.CB) [> 3.6999 = 6.1665 < 8.0165] w=0.2413 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)A194.CB) [> 3.6845 = 6.1408 < 7.9830] w=0.2374 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)F91.CB) [> 4.1986 = 6.9977 < 9.0970] w=0.2374 to align
# Constraint # added constraint: constraint((T0324)T22.CB, (T0324)A41.CB) [> 3.1050 = 5.1750 < 6.7276] w=0.2354 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)A153.CB) [> 4.5764 = 7.6273 < 9.9154] w=0.2354 to align
# Constraint # added constraint: constraint((T0324)L147.CB, (T0324)N156.CB) [> 4.5936 = 7.6560 < 9.9528] w=0.2352 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)T169.CB) [> 3.7605 = 6.2674 < 8.1477] w=0.2352 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)A172.CB) [> 4.3872 = 7.3121 < 9.5057] w=0.2349 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)A130.CB) [> 4.5238 = 7.5397 < 9.8017] w=0.2338 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)S163.CB) [> 4.5270 = 7.5450 < 9.8084] w=0.2315 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)D131.CB) [> 4.2452 = 7.0753 < 9.1979] w=0.2304 to align
# Constraint # added constraint: constraint((T0324)T22.CB, (T0324)Q42.CB) [> 3.6314 = 6.0524 < 7.8681] w=0.2283 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)P142.CB) [> 4.4119 = 7.3532 < 9.5592] w=0.2283 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)W182.CB) [> 3.7598 = 6.2664 < 8.1463] w=0.2282 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)V103.CB) [> 4.5379 = 7.5632 < 9.8322] w=0.2280 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)A173.CB) [> 4.1306 = 6.8843 < 8.9496] w=0.2279 to align
# Constraint # added constraint: constraint((T0324)Y21.CB, (T0324)M74.CB) [> 3.8981 = 6.4967 < 8.4458] w=0.2278 to align
# Constraint # added constraint: constraint((T0324)W182.CB, (T0324)P200.CB) [> 4.0083 = 6.6805 < 8.6847] w=0.2270 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)S129.CB) [> 4.4583 = 7.4306 < 9.6597] w=0.2210 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)N174.CB) [> 4.1063 = 6.8438 < 8.8970] w=0.2209 to align
# Constraint # added constraint: constraint((T0324)N156.CB, (T0324)N174.CB) [> 3.5806 = 5.9676 < 7.7579] w=0.2209 to align
# Constraint # added constraint: constraint((T0324)Y78.CB, (T0324)G114.CA) [> 3.8625 = 6.4375 < 8.3688] w=0.2160 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)T127.CB) [> 4.3150 = 7.1917 < 9.3492] w=0.2157 to align
# Constraint # added constraint: constraint((T0324)T23.CB, (T0324)H77.CB) [> 3.6374 = 6.0624 < 7.8811] w=0.2128 to align
# Constraint # added constraint: constraint((T0324)M74.CB, (T0324)E110.CB) [> 4.1267 = 6.8778 < 8.9412] w=0.2068 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)H190.CB) [> 3.4545 = 5.7575 < 7.4847] w=0.1997 to align
# Constraint # added constraint: constraint((T0324)T44.CB, (T0324)L56.CB) [> 3.7912 = 6.3187 < 8.2143] w=0.1996 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)G114.CA) [> 4.5973 = 7.6621 < 9.9608] w=0.1995 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)A146.CB) [> 4.1936 = 6.9893 < 9.0861] w=0.1926 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)A125.CB) [> 4.6889 = 7.8148 < 10.1593] w=0.1926 to align
# Constraint # added constraint: constraint((T0324)T2.CB, (T0324)N156.CB) [> 3.8840 = 6.4734 < 8.4154] w=0.1924 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)I81.CB) [> 4.0325 = 6.7208 < 8.7370] w=0.1912 to align
# Constraint # added constraint: constraint((T0324)V164.CB, (T0324)V193.CB) [> 4.3906 = 7.3177 < 9.5130] w=0.1855 to align
# Constraint # added constraint: constraint((T0324)W182.CB, (T0324)F197.CB) [> 3.7897 = 6.3161 < 8.2109] w=0.1854 to align
# Constraint # added constraint: constraint((T0324)W182.CB, (T0324)R196.CB) [> 4.1795 = 6.9659 < 9.0556] w=0.1853 to align
# Constraint # added constraint: constraint((T0324)S17.CB, (T0324)E82.CB) [> 4.0580 = 6.7633 < 8.7923] w=0.1852 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)I128.CB) [> 4.6891 = 7.8152 < 10.1598] w=0.1819 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)F120.CB) [> 3.6685 = 6.1142 < 7.9485] w=0.1795 to align
# Constraint # added constraint: constraint((T0324)P95.CB, (T0324)A125.CB) [> 4.4420 = 7.4033 < 9.6243] w=0.1783 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)W182.CB) [> 3.8291 = 6.3819 < 8.2964] w=0.1782 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)V181.CB) [> 3.6146 = 6.0243 < 7.8316] w=0.1782 to align
# Constraint # added constraint: constraint((T0324)E50.CB, (T0324)Q67.CB) [> 3.3566 = 5.5944 < 7.2727] w=0.1726 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)A170.CB) [> 4.6477 = 7.7463 < 10.0701] w=0.1712 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)L179.CB) [> 3.5880 = 5.9801 < 7.7741] w=0.1710 to align
# Constraint # added constraint: constraint((T0324)M53.CB, (T0324)F66.CB) [> 3.2445 = 5.4075 < 7.0297] w=0.1654 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)L179.CB) [> 4.2927 = 7.1544 < 9.3007] w=0.1640 to align
# Constraint # added constraint: constraint((T0324)A180.CB, (T0324)H195.CB) [> 3.6321 = 6.0534 < 7.8695] w=0.1639 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)M122.CB) [> 4.0270 = 6.7116 < 8.7251] w=0.1639 to align
# Constraint # added constraint: constraint((T0324)T54.CB, (T0324)F63.CB) [> 3.5791 = 5.9651 < 7.7547] w=0.1629 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)S105.CB) [> 4.6295 = 7.7159 < 10.0307] w=0.1601 to align
# Constraint # added constraint: constraint((T0324)G183.CA, (T0324)Q198.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.1569 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)P186.CB) [> 3.9559 = 6.5931 < 8.5711] w=0.1568 to align
# Constraint # added constraint: constraint((T0324)L179.CB, (T0324)K192.CB) [> 4.2764 = 7.1274 < 9.2656] w=0.1567 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)F120.CB) [> 3.2371 = 5.3951 < 7.0136] w=0.1567 to align
# Constraint # added constraint: constraint((T0324)N16.CB, (T0324)G183.CA) [> 4.1326 = 6.8876 < 8.9539] w=0.1546 to align
# Constraint # added constraint: constraint((T0324)I102.CB, (T0324)R123.CB) [> 2.9467 = 4.9112 < 6.3846] w=0.1517 to align
# Constraint # added constraint: constraint((T0324)P46.CB, (T0324)V164.CB) [> 4.2613 = 7.1021 < 9.2327] w=0.1498 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)V150.CB) [> 4.5836 = 7.6394 < 9.9312] w=0.1498 to align
# Constraint # added constraint: constraint((T0324)Y32.CB, (T0324)E62.CB) [> 4.2059 = 7.0098 < 9.1127] w=0.1497 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)M122.CB) [> 4.0929 = 6.8214 < 8.8679] w=0.1493 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)M121.CB) [> 3.4689 = 5.7815 < 7.5160] w=0.1484 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)R123.CB) [> 3.8258 = 6.3763 < 8.2893] w=0.1438 to align
# Constraint # added constraint: constraint((T0324)Y21.CB, (T0324)F45.CB) [> 4.0266 = 6.7110 < 8.7242] w=0.1427 to align
# Constraint # added constraint: constraint((T0324)L111.CB, (T0324)A130.CB) [> 3.8233 = 6.3722 < 8.2838] w=0.1426 to align
# Constraint # added constraint: constraint((T0324)R99.CB, (T0324)N151.CB) [> 4.4578 = 7.4297 < 9.6586] w=0.1426 to align
# Constraint # added constraint: constraint((T0324)S17.CB, (T0324)R26.CB) [> 4.1414 = 6.9023 < 8.9730] w=0.1425 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)F120.CB) [> 3.3235 = 5.5392 < 7.2010] w=0.1424 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)V181.CB) [> 4.3718 = 7.2864 < 9.4723] w=0.1391 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)V24.CB) [> 4.2976 = 7.1627 < 9.3115] w=0.1360 to align
# Constraint # added constraint: constraint((T0324)E50.CB, (T0324)F63.CB) [> 4.0342 = 6.7237 < 8.7408] w=0.1355 to align
# Constraint # added constraint: constraint((T0324)Y32.CB, (T0324)I58.CB) [> 3.7511 = 6.2519 < 8.1275] w=0.1355 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)G183.CA) [> 4.3724 = 7.2874 < 9.4736] w=0.1354 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)V126.CB) [> 4.5007 = 7.5012 < 9.7516] w=0.1349 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)Y21.CB) [> 4.1492 = 6.9153 < 8.9898] w=0.1344 to align
# Constraint # added constraint: constraint((T0324)Y21.CB, (T0324)H77.CB) [> 4.1430 = 6.9050 < 8.9765] w=0.1286 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)G183.CA) [> 4.1206 = 6.8677 < 8.9280] w=0.1284 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)A170.CB) [> 4.7404 = 7.9006 < 10.2708] w=0.1284 to align
# Constraint # added constraint: constraint((T0324)Y78.CB, (T0324)S117.CB) [> 4.0197 = 6.6995 < 8.7093] w=0.1284 to align
# Constraint # added constraint: constraint((T0324)N156.CB, (T0324)V175.CB) [> 4.6842 = 7.8070 < 10.1491] w=0.1284 to align
# Constraint # added constraint: constraint((T0324)L111.CB, (T0324)I128.CB) [> 4.1371 = 6.8951 < 8.9636] w=0.1283 to align
# Constraint # added constraint: constraint((T0324)N156.CB, (T0324)D176.CB) [> 3.8748 = 6.4580 < 8.3953] w=0.1283 to align
# Constraint # added constraint: constraint((T0324)Y32.CB, (T0324)H65.CB) [> 4.2429 = 7.0715 < 9.1929] w=0.1283 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)V181.CB) [> 4.2454 = 7.0757 < 9.1984] w=0.1283 to align
# Constraint # added constraint: constraint((T0324)G101.CA, (T0324)M122.CB) [> 2.7098 = 4.5163 < 5.8712] w=0.1282 to align
# Constraint # added constraint: constraint((T0324)S17.CB, (T0324)E27.CB) [> 3.3256 = 5.5426 < 7.2054] w=0.1270 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)Y78.CB) [> 4.4391 = 7.3984 < 9.6180] w=0.1234 to align
# Constraint # added constraint: constraint((T0324)D9.CB, (T0324)A180.CB) [> 4.3897 = 7.3161 < 9.5110] w=0.1232 to align
# Constraint # added constraint: constraint((T0324)M53.CB, (T0324)Q67.CB) [> 3.4022 = 5.6703 < 7.3714] w=0.1226 to align
# Constraint # added constraint: constraint((T0324)Q18.CB, (T0324)M184.CB) [> 4.2226 = 7.0376 < 9.1489] w=0.1226 to align
# Constraint # added constraint: constraint((T0324)T15.CB, (T0324)Q80.CB) [> 4.1311 = 6.8852 < 8.9508] w=0.1213 to align
# Constraint # added constraint: constraint((T0324)M1.CB, (T0324)N156.CB) [> 3.8049 = 6.3415 < 8.2439] w=0.1213 to align
# Constraint # added constraint: constraint((T0324)A180.CB, (T0324)V193.CB) [> 3.0783 = 5.1306 < 6.6697] w=0.1212 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)V181.CB) [> 3.8265 = 6.3774 < 8.2906] w=0.1211 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)V24.CB) [> 3.4235 = 5.7059 < 7.4176] w=0.1211 to align
# Constraint # added constraint: constraint((T0324)Q106.CB, (T0324)V126.CB) [> 3.7113 = 6.1856 < 8.0412] w=0.1211 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)V126.CB) [> 4.0044 = 6.6740 < 8.6762] w=0.1211 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)M184.CB) [> 4.3960 = 7.3267 < 9.5247] w=0.1189 to align
# Constraint # added constraint: constraint((T0324)F177.CB, (T0324)R196.CB) [> 4.2349 = 7.0582 < 9.1757] w=0.1141 to align
# Constraint # added constraint: constraint((T0324)F159.CB, (T0324)A180.CB) [> 4.1444 = 6.9074 < 8.9796] w=0.1140 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)M124.CB) [> 4.3034 = 7.1724 < 9.3241] w=0.1139 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)M25.CB) [> 4.3156 = 7.1927 < 9.3505] w=0.1128 to align
# Constraint # added constraint: constraint((T0324)S17.CB, (T0324)Y78.CB) [> 4.2271 = 7.0452 < 9.1587] w=0.1091 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)Y118.CB) [> 4.4941 = 7.4902 < 9.7372] w=0.1081 to align
# Constraint # added constraint: constraint((T0324)Y21.CB, (T0324)Y70.CB) [> 3.8927 = 6.4878 < 8.4342] w=0.1076 to align
# Constraint # added constraint: constraint((T0324)A130.CB, (T0324)L141.CB) [> 4.4582 = 7.4303 < 9.6594] w=0.1070 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)S163.CB) [> 4.3629 = 7.2714 < 9.4528] w=0.1070 to align
# Constraint # added constraint: constraint((T0324)M124.CB, (T0324)P142.CB) [> 3.4709 = 5.7848 < 7.5202] w=0.1068 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)S163.CB) [> 4.5903 = 7.6505 < 9.9457] w=0.1068 to align
# Constraint # added constraint: constraint((T0324)L94.CB, (T0324)R123.CB) [> 4.3338 = 7.2230 < 9.3899] w=0.1066 to align
# Constraint # added constraint: constraint((T0324)L90.CB, (T0324)F207.CB) [> 3.3099 = 5.5165 < 7.1715] w=0.1058 to align
# Constraint # added constraint: constraint((T0324)A130.CB, (T0324)D139.CB) [> 4.5806 = 7.6344 < 9.9247] w=0.0999 to align
# Constraint # added constraint: constraint((T0324)N16.CB, (T0324)M184.CB) [> 3.7213 = 6.2022 < 8.0628] w=0.0999 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)P200.CB) [> 4.2562 = 7.0937 < 9.2218] w=0.0999 to align
# Constraint # added constraint: constraint((T0324)L6.CB, (T0324)V28.CB) [> 3.6505 = 6.0841 < 7.9094] w=0.0999 to align
# Constraint # added constraint: constraint((T0324)T104.CB, (T0324)A125.CB) [> 2.6899 = 4.4831 < 5.8281] w=0.0925 to align
# Constraint # added constraint: constraint((T0324)R99.CB, (T0324)M121.CB) [> 2.8976 = 4.8293 < 6.2781] w=0.0925 to align
# Constraint # added constraint: constraint((T0324)M47.CB, (T0324)S163.CB) [> 2.9550 = 4.9250 < 6.4025] w=0.0870 to align
# Constraint # added constraint: constraint((T0324)L29.CB, (T0324)M53.CB) [> 3.9817 = 6.6361 < 8.6270] w=0.0856 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)Q155.CB) [> 3.5252 = 5.8754 < 7.6380] w=0.0856 to align
# Constraint # added constraint: constraint((T0324)I160.CB, (T0324)W182.CB) [> 4.1437 = 6.9061 < 8.9780] w=0.0856 to align
# Constraint # added constraint: constraint((T0324)T13.CB, (T0324)F197.CB) [> 3.0692 = 5.1154 < 6.6500] w=0.0856 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)D132.CB) [> 3.8476 = 6.4126 < 8.3364] w=0.0856 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)G57.CA) [> 3.7422 = 6.2370 < 8.1081] w=0.0855 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)H65.CB) [> 3.8679 = 6.4466 < 8.3805] w=0.0855 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)W182.CB) [> 4.2589 = 7.0981 < 9.2276] w=0.0855 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)H195.CB) [> 4.2234 = 7.0390 < 9.1507] w=0.0855 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)Q42.CB) [> 3.4495 = 5.7491 < 7.4738] w=0.0785 to align
# Constraint # added constraint: constraint((T0324)L29.CB, (T0324)F66.CB) [> 4.4468 = 7.4114 < 9.6348] w=0.0784 to align
# Constraint # added constraint: constraint((T0324)A180.CB, (T0324)D202.CB) [> 4.3345 = 7.2241 < 9.3913] w=0.0783 to align
# Constraint # added constraint: constraint((T0324)A60.CB, (T0324)A130.CB) [> 3.0999 = 5.1665 < 6.7164] w=0.0780 to align
# Constraint # added constraint: constraint((T0324)Q18.CB, (T0324)D162.CB) [> 3.8421 = 6.4035 < 8.3245] w=0.0761 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)T133.CB) [> 3.7373 = 6.2288 < 8.0975] w=0.0734 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)M25.CB) [> 4.1012 = 6.8354 < 8.8860] w=0.0713 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)N174.CB) [> 4.2734 = 7.1224 < 9.2591] w=0.0713 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)V193.CB) [> 2.2863 = 3.8105 < 4.9536] w=0.0713 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)E50.CB) [> 3.8977 = 6.4961 < 8.4449] w=0.0713 to align
# Constraint # added constraint: constraint((T0324)A157.CB, (T0324)F177.CB) [> 4.3077 = 7.1795 < 9.3333] w=0.0712 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)M124.CB) [> 4.6813 = 7.8022 < 10.1429] w=0.0642 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)M25.CB) [> 4.6505 = 7.7509 < 10.0762] w=0.0642 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)V193.CB) [> 4.7362 = 7.8937 < 10.2619] w=0.0642 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)D132.CB) [> 4.1510 = 6.9184 < 8.9939] w=0.0642 to align
# Constraint # added constraint: constraint((T0324)L100.CB, (T0324)T127.CB) [> 4.2381 = 7.0634 < 9.1825] w=0.0642 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)V150.CB) [> 4.0160 = 6.6933 < 8.7012] w=0.0640 to align
# Constraint # added constraint: constraint((T0324)Q4.CB, (T0324)L94.CB) [> 4.5335 = 7.5559 < 9.8227] w=0.0640 to align
# Constraint # added constraint: constraint((T0324)L14.CB, (T0324)I160.CB) [> 4.4860 = 7.4766 < 9.7196] w=0.0638 to align
# Constraint # added constraint: constraint((T0324)Y21.CB, (T0324)V73.CB) [> 3.8738 = 6.4564 < 8.3933] w=0.0577 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)A41.CB) [> 3.5739 = 5.9565 < 7.7435] w=0.0571 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)P200.CB) [> 3.5629 = 5.9381 < 7.7195] w=0.0569 to align
# Constraint # added constraint: constraint((T0324)Q93.CB, (T0324)P200.CB) [> 3.1962 = 5.3269 < 6.9250] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)G57.CA) [> 4.0879 = 6.8131 < 8.8570] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)F45.CB) [> 2.9609 = 4.9349 < 6.4154] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)Y3.CB, (T0324)Q155.CB) [> 4.5671 = 7.6119 < 9.8954] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)L111.CB, (T0324)D131.CB) [> 4.4054 = 7.3424 < 9.5451] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)F66.CB) [> 4.1071 = 6.8452 < 8.8987] w=0.0499 to align
# Constraint # added constraint: constraint((T0324)T2.CB, (T0324)V152.CB) [> 4.6899 = 7.8165 < 10.1614] w=0.0498 to align
# Constraint # added constraint: constraint((T0324)F63.CB, (T0324)I128.CB) [> 4.0597 = 6.7661 < 8.7959] w=0.0498 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)G183.CA) [> 4.6861 = 7.8102 < 10.1532] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)F45.CB, (T0324)S105.CB) [> 4.4997 = 7.4996 < 9.7494] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)L158.CB, (T0324)H195.CB) [> 4.0525 = 6.7542 < 8.7805] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)M47.CB, (T0324)D162.CB) [> 4.4822 = 7.4702 < 9.7113] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)V164.CB, (T0324)V181.CB) [> 4.5856 = 7.6427 < 9.9355] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)T127.CB) [> 4.6568 = 7.7613 < 10.0897] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)V181.CB) [> 4.1072 = 6.8453 < 8.8989] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)D162.CB, (T0324)P200.CB) [> 4.1996 = 6.9994 < 9.0992] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)T127.CB, (T0324)V150.CB) [> 4.1087 = 6.8478 < 8.9021] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)T2.CB, (T0324)Q155.CB) [> 4.0676 = 6.7794 < 8.8132] w=0.0428 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)I58.CB) [> 4.2017 = 7.0028 < 9.1036] w=0.0427 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)F45.CB) [> 4.6149 = 7.6915 < 9.9989] w=0.0357 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)M47.CB) [> 4.5919 = 7.6532 < 9.9492] w=0.0357 to align
# Constraint # added constraint: constraint((T0324)M1.CB, (T0324)L98.CB) [> 4.5957 = 7.6595 < 9.9573] w=0.0357 to align
# Constraint # added constraint: constraint((T0324)V181.CB, (T0324)K192.CB) [> 4.4754 = 7.4590 < 9.6967] w=0.0357 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)L179.CB) [> 3.5478 = 5.9130 < 7.6869] w=0.0356 to align
# Constraint # added constraint: constraint((T0324)N156.CB, (T0324)F177.CB) [> 4.3582 = 7.2636 < 9.4427] w=0.0355 to align
# Constraint # added constraint: constraint((T0324)A49.CB, (T0324)A60.CB) [> 4.6564 = 7.7606 < 10.0888] w=0.0285 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)P200.CB) [> 4.1083 = 6.8472 < 8.9014] w=0.0285 to align
# Constraint # added constraint: constraint((T0324)G161.CA, (T0324)H195.CB) [> 4.0539 = 6.7565 < 8.7835] w=0.0284 to align
# Constraint # added constraint: constraint((T0324)F36.CB, (T0324)M53.CB) [> 3.9820 = 6.6367 < 8.6277] w=0.0228 to align
# Constraint # added constraint: constraint((T0324)Q42.CB, (T0324)G183.CA) [> 4.1610 = 6.9350 < 9.0155] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)I10.CB, (T0324)F120.CB) [> 4.2390 = 7.0651 < 9.1846] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)A49.CB, (T0324)I58.CB) [> 4.1157 = 6.8595 < 8.9174] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)S105.CB, (T0324)T127.CB) [> 4.3999 = 7.3332 < 9.5331] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)I81.CB) [> 4.7154 = 7.8590 < 10.2167] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)F36.CB) [> 3.7962 = 6.3269 < 8.2250] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)S105.CB) [> 4.4089 = 7.3481 < 9.5526] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)A5.CB, (T0324)M121.CB) [> 4.5358 = 7.5596 < 9.8275] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)T127.CB) [> 4.1678 = 6.9463 < 9.0302] w=0.0214 to align
# Constraint # added constraint: constraint((T0324)M74.CB, (T0324)I128.CB) [> 4.3706 = 7.2843 < 9.4695] w=0.0213 to align
# Constraint # added constraint: constraint((T0324)D11.CB, (T0324)G161.CA) [> 4.1586 = 6.9310 < 9.0103] w=0.0213 to align
# Constraint # added constraint: constraint((T0324)V150.CB, (T0324)V175.CB) [> 4.7339 = 7.8899 < 10.2568] w=0.0210 to align
# Constraint # added constraint: constraint((T0324)F8.CB, (T0324)A180.CB) [> 4.4451 = 7.4085 < 9.6310] w=0.0180 to align
# Constraint # added constraint: constraint((T0324)L29.CB, (T0324)P46.CB) [> 3.7649 = 6.2749 < 8.1574] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)P200.CB) [> 3.3268 = 5.5446 < 7.2080] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)S163.CB, (T0324)A180.CB) [> 4.4918 = 7.4863 < 9.7323] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)M25.CB, (T0324)L100.CB) [> 3.0633 = 5.1055 < 6.6371] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)L98.CB) [> 2.6512 = 4.4187 < 5.7444] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)V28.CB, (T0324)L100.CB) [> 3.3983 = 5.6639 < 7.3631] w=0.0143 to align
# Constraint # added constraint: constraint((T0324)M7.CB, (T0324)A172.CB) [> 3.1363 = 5.2272 < 6.7953] w=0.0140 to align
# Constraint # added constraint: constraint((T0324)M1.CB, (T0324)L206.CB) [> 3.4914 = 5.8190 < 7.5647] w=0.0071 to align
# Constraint # added constraint: constraint((T0324)V103.CB, (T0324)G161.CA) [> 4.7616 = 7.9360 < 10.3168] w=0.0071 to align
# Constraint # added constraint: constraint((T0324)G12.CA, (T0324)M25.CB) [> 4.7758 = 7.9597 < 10.3476] w=0.0060 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0324/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0324/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 200
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# Found a chain break before 183
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# Found a chain break before 183
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 152
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 197
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 203
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 150
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 197
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 175
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 195
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 106
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# Found a chain break before 185
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 186
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 186
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 192
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
Skipped atom 15, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
Skipped atom 786, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 788, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 790, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 792, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 794, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 796, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 806, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 808, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 810, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 812, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 814, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 816, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 818, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 820, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 822, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 824, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 826, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 828, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
Skipped atom 15, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 194
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 171
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 168
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 168
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 194
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 195
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 192
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# Found a chain break before 45
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 142
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 59
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# Found a chain break before 182
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 150
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 117
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 150
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 142
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# Found a chain break before 193
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 173
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 185
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# Found a chain break before 183
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# Found a chain break before 192
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 2
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 157
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 201
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 192
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 174
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 104
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 654, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 656, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 658, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
Skipped atom 660, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 470, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 472, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 474, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
Skipped atom 476, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
Skipped atom 186, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 188, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
Skipped atom 22, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 24, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 88, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 90, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 92, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 466, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 468, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 470, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
Skipped atom 472, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T99_AL4
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 110, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 112, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 398, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 400, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 550, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 552, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 554, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
Skipped atom 556, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation SAM-T99_AL5
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 198
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 157
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 117
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 180
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 185
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 117
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 182
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 157
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 474, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 476, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 478, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
Skipped atom 480, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 306, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 354, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 356, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 658, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 660, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 662, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
Skipped atom 664, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 184
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 194
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 181
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 207
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# Found a chain break before 195
# copying to AlignedFragments data structure
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
Skipped atom 63, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 97, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 606, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 611, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 732, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
Skipped atom 62, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 82, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 84, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 88, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 642, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 644, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 646, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 648, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation gtg_AL4
# ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation gtg_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 187
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 191
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 45
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0324)T104.O and (T0324)S105.N only 0.000 apart, marking (T0324)S105.N as missing
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
WARNING: atoms too close: (T0324)S129.O and (T0324)A130.N only 0.000 apart, marking (T0324)A130.N as missing
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
WARNING: atoms too close: (T0324)A180.O and (T0324)V181.N only 0.000 apart, marking (T0324)V181.N as missing
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
WARNING: atoms too close: (T0324)T133.O and (T0324)P134.N only 0.000 apart, marking (T0324)P134.N as missing
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# Found a chain break before 191
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# Found a chain break before 191
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# Found a chain break before 181
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 192
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# Found a chain break before 175
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 194
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0324 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# Found a chain break before 203
# copying to AlignedFragments data structure
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 259
model score -0.3171
model score -0.4615
model score -0.2970
model score -0.4833
model score -0.4217
model score -0.4736
model score -0.4399
model score -0.5011
model score -0.4999
model score -0.4754
model score -0.0509
model score -0.4245
model score 0.1338
model score -0.5022
model score -0.4813
model score -0.6406
model score 1.1472
model score 1.2778
model score 1.3951
model score 1.6322
model score 1.7393
model score 1.8339
model score 1.6802
model score 1.7854
model score 1.9204
model score -0.4195
model score -0.5545
model score -0.5288
model score -0.5544
model score -0.2001
model score -0.1853
model score -0.5094
model score -0.5333
model score -0.4677
model score -0.4778
model score -0.3614
model score 0.1357
model score -0.0436
model score 0.0944
model score 0.4319
model score -0.4745
model score -0.0617
model score 1.2596
model score 1.2599
model score 1.2615
model score 1.2636
model score 1.2609
model score -0.4778
model score -0.5433
model score -0.5198
model score -0.5366
model score -0.4677
model score -0.5128
model score -0.5333
model score -0.4778
model score -0.4778
model score -0.4677
model score -0.6206
model score 1.1801
model score 1.0630
model score 1.0460
model score 1.1005
model score 1.2664
model score 1.2597
model score 1.2592
model score 1.2594
model score 1.2562
model score 1.2664
model score 1.2592
model score 1.2597
model score 1.2562
model score 1.2592
model score 2.1488
model score 2.0649
model score 2.3311
model score 2.3336
model score 2.5086
model score -0.5172
model score -0.1932
model score -0.0682
model score -0.0570
model score -0.0488
model score 1.2562
model score 1.2584
model score 1.2564
model score 1.2551
model score 1.2587
model score -0.4647
model score -0.3336
model score -0.5480
model score -0.3629
model score -0.4284
model score -0.5063
model score -0.5069
model score -0.4209
model score -0.5001
model score -0.3888
model score -0.5315
model score -0.3977
model score -0.3862
model score -0.4190
model score 0.0486
model score -0.4367
model score 0.1985
model score -0.1704
model score 0.1192
model score -0.0477
model score -0.1656
model score 0.0965
model score -0.1803
model score -0.4707
model score -0.5636
model score -0.4897
model score -0.5036
model score -0.5552
model score -0.3765
model score -0.5636
model score -0.5036
model score -0.4809
model score -0.5609
model score -0.5650
model score -0.3366
model score -0.2135
model score -0.4220
model score -0.5074
model score 0.1192
model score -0.5218
model score -0.5236
model score -0.5226
model score -0.4394
model score -0.4472
model score -0.3976
model score -0.3986
model score -0.4347
model score -0.4530
model score -0.5225
model score -0.5233
model score -0.5440
model score -0.5765
model score -0.3734
model score -0.3928
model score -0.4382
model score -0.4811
model score -0.4342
model score -0.4844
model score -0.4387
model score -0.4401
model score -0.4931
model score -0.5132
model score -0.5049
model score -0.5094
model score -0.5765
model score -0.5278
model score -0.5413
model score -0.5461
model score -0.5216
model score -0.5053
model score -0.5313
model score -0.2081
model score -0.5109
model score -0.4095
model score -0.3969
model score -0.5412
model score -0.2330
model score -0.5444
model score -0.4174
model score -0.3952
model score -0.5094
model score -0.4880
model score -0.5049
model score -0.5132
model score -0.5366
model score -0.5510
model score -0.3771
model score -0.1525
model score -0.4916
model score -0.2156
model score 1.2562
model score 1.2597
model score 1.2567
model score 1.2592
model score 1.2585
model score 1.2594
model score 1.2562
model score 1.2592
model score 1.2601
model score 1.2592
model score -0.4445
model score 0.0102
model score -0.3100
model score -0.0760
model score -0.2408
model score -0.3438
model score -0.5461
model score 0.0128
model score -0.3654
model score -0.2791
model score -0.5461
model score -0.3649
model score 0.0114
model score -0.3654
model score -0.4000
model score -0.5453
model score -0.3438
model score -0.1112
model score -0.3694
model score -0.3413
model score 1.2562
model score 1.2592
model score 1.2597
model score 1.2584
model score 1.2584
model score -0.5473
model score 1.2562
model score 1.2592
model score 1.2597
model score 1.2584
model score 1.2567
model score -0.6016
model score -0.6068
model score -0.3695
model score -0.3929
model score -0.3367
model score -0.5455
model score -0.5125
model score 1.2565
model score 1.2667
model score 1.2568
model score 1.2667
model score 1.2688
model score 1.2674
model score 1.2709
model score -0.5446
model score -0.5531
model score -0.5442
model score -0.2869
model score -0.5528
model score 1.9872
model score 2.4044
model score 2.3216
model score 1.9057
model score 2.0127
model score -0.2868
model score -0.4348
model score -0.4625
model score -0.4820
model score -0.4104
model score -0.4094
model score -0.4952
model score -0.5095
model score -0.5292
model score -0.5167
model score -0.4044
model score -0.3818
model score -0.5069
model score -0.4617
model score -0.2251
model score -0.0765
model score -0.4655
weight: 0.9076 eval: -0.3171 min: -0.6406 max: 2.5086
weight: 0.9488 eval: -0.4615 min: -0.6406 max: 2.5086
weight: 0.9018 eval: -0.2970 min: -0.6406 max: 2.5086
weight: 0.9550 eval: -0.4833 min: -0.6406 max: 2.5086
weight: 0.9374 eval: -0.4217 min: -0.6406 max: 2.5086
weight: 0.9523 eval: -0.4736 min: -0.6406 max: 2.5086
weight: 0.9426 eval: -0.4399 min: -0.6406 max: 2.5086
weight: 0.9601 eval: -0.5011 min: -0.6406 max: 2.5086
weight: 0.9598 eval: -0.4999 min: -0.6406 max: 2.5086
weight: 0.9528 eval: -0.4754 min: -0.6406 max: 2.5086
weight: 0.8315 eval: -0.0509 min: -0.6406 max: 2.5086
weight: 0.9382 eval: -0.4245 min: -0.6406 max: 2.5086
weight: 0.7787 eval: 0.1338 min: -0.6406 max: 2.5086
weight: 0.9604 eval: -0.5022 min: -0.6406 max: 2.5086
weight: 0.9545 eval: -0.4813 min: -0.6406 max: 2.5086
weight: 1.0000 eval: -0.6406 min: -0.6406 max: 2.5086
weight: 0.4891 eval: 1.1472 min: -0.6406 max: 2.5086
weight: 0.4517 eval: 1.2778 min: -0.6406 max: 2.5086
weight: 0.4182 eval: 1.3951 min: -0.6406 max: 2.5086
weight: 0.3504 eval: 1.6322 min: -0.6406 max: 2.5086
weight: 0.3199 eval: 1.7393 min: -0.6406 max: 2.5086
weight: 0.2928 eval: 1.8339 min: -0.6406 max: 2.5086
weight: 0.3367 eval: 1.6802 min: -0.6406 max: 2.5086
weight: 0.3067 eval: 1.7854 min: -0.6406 max: 2.5086
weight: 0.2681 eval: 1.9204 min: -0.6406 max: 2.5086
weight: 0.9368 eval: -0.4195 min: -0.6406 max: 2.5086
weight: 0.9754 eval: -0.5545 min: -0.6406 max: 2.5086
weight: 0.9680 eval: -0.5288 min: -0.6406 max: 2.5086
weight: 0.9754 eval: -0.5544 min: -0.6406 max: 2.5086
weight: 0.8741 eval: -0.2001 min: -0.6406 max: 2.5086
weight: 0.8699 eval: -0.1853 min: -0.6406 max: 2.5086
weight: 0.9625 eval: -0.5094 min: -0.6406 max: 2.5086
weight: 0.9693 eval: -0.5333 min: -0.6406 max: 2.5086
weight: 0.9506 eval: -0.4677 min: -0.6406 max: 2.5086
weight: 0.9535 eval: -0.4778 min: -0.6406 max: 2.5086
weight: 0.9202 eval: -0.3614 min: -0.6406 max: 2.5086
weight: 0.7781 eval: 0.1357 min: -0.6406 max: 2.5086
weight: 0.8294 eval: -0.0436 min: -0.6406 max: 2.5086
weight: 0.7899 eval: 0.0944 min: -0.6406 max: 2.5086
weight: 0.6935 eval: 0.4319 min: -0.6406 max: 2.5086
weight: 0.9525 eval: -0.4745 min: -0.6406 max: 2.5086
weight: 0.8346 eval: -0.0617 min: -0.6406 max: 2.5086
weight: 0.4569 eval: 1.2596 min: -0.6406 max: 2.5086
weight: 0.4569 eval: 1.2599 min: -0.6406 max: 2.5086
weight: 0.4564 eval: 1.2615 min: -0.6406 max: 2.5086
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Adding 6038 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -343.6532, CN propb: -343.6532 weights: 0.4581 constraints: 522
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 522
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 522
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 5516
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 5516
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 6038
# command: