# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/ # command:# Making conformation for sequence T0323 numbered 1 through 221 Created new target T0323 from T0323.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)I96.CB) [> 2.6603 = 4.4339 < 5.7640] w=1.0000 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)C103.CB) [> 2.5670 = 4.2784 < 5.5619] w=0.9804 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)C103.CB) [> 2.4761 = 4.1268 < 5.3649] w=0.9545 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)I99.CB) [> 3.6618 = 6.1029 < 7.9338] w=0.9545 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)R100.CB) [> 3.2074 = 5.3458 < 6.9495] w=0.9467 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)F142.CB) [> 3.2669 = 5.4448 < 7.0783] w=0.9412 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)Y61.CB) [> 3.4371 = 5.7286 < 7.4471] w=0.9412 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)I99.CB) [> 3.6400 = 6.0666 < 7.8867] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)A57.CB) [> 3.1227 = 5.2044 < 6.7658] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)I60.CB) [> 3.5736 = 5.9560 < 7.7428] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)K95.CB) [> 3.9602 = 6.6003 < 8.5804] w=0.9412 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)E107.CB) [> 3.2529 = 5.4216 < 7.0481] w=0.9412 to align # Constraint # added constraint: constraint((T0323)T129.CB, (T0323)A139.CB) [> 2.9111 = 4.8518 < 6.3074] w=0.9404 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)F142.CB) [> 3.4308 = 5.7180 < 7.4334] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)S146.CB) [> 2.6215 = 4.3691 < 5.6798] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)T138.CB) [> 2.9288 = 4.8814 < 6.3458] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)M141.CB) [> 2.9757 = 4.9596 < 6.4474] w=0.9386 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)I134.CB) [> 3.9717 = 6.6196 < 8.6054] w=0.9386 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)T138.CB) [> 3.8912 = 6.4853 < 8.4309] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)K132.CB) [> 3.3525 = 5.5875 < 7.2638] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)G133.CA) [> 2.6464 = 4.4107 < 5.7340] w=0.9386 to align # Constraint # added constraint: constraint((T0323)H101.CB, (T0323)K132.CB) [> 3.4366 = 5.7277 < 7.4460] w=0.9386 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)I131.CB) [> 2.9416 = 4.9027 < 6.3735] w=0.9386 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)I131.CB) [> 3.6204 = 6.0340 < 7.8442] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)R100.CB) [> 4.0248 = 6.7080 < 8.7205] w=0.9348 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)S146.CB) [> 2.8758 = 4.7930 < 6.2309] w=0.9334 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)P75.CB) [> 3.5258 = 5.8763 < 7.6392] w=0.9334 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)F145.CB) [> 3.2480 = 5.4133 < 7.0372] w=0.9334 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)I134.CB) [> 4.2495 = 7.0824 < 9.2071] w=0.9334 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)D157.CB) [> 3.4203 = 5.7006 < 7.4107] w=0.9334 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)L153.CB) [> 3.4244 = 5.7073 < 7.4195] w=0.9334 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)S154.CB) [> 3.0330 = 5.0549 < 6.5714] w=0.9334 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)A139.CB) [> 2.4876 = 4.1461 < 5.3899] w=0.9196 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)E97.CB) [> 3.5429 = 5.9047 < 7.6762] w=0.9152 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)E104.CB) [> 3.0273 = 5.0455 < 6.5591] w=0.9152 to align # Constraint # added constraint: constraint((T0323)E76.CB, (T0323)E107.CB) [> 3.9314 = 6.5523 < 8.5180] w=0.9152 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)C103.CB) [> 2.8728 = 4.7880 < 6.2244] w=0.9152 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)M143.CB) [> 4.2500 = 7.0834 < 9.2084] w=0.9144 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)F142.CB) [> 3.5558 = 5.9263 < 7.7042] w=0.9144 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)V106.CB) [> 3.2009 = 5.3348 < 6.9353] w=0.9075 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)A57.CB) [> 4.0028 = 6.6714 < 8.6728] w=0.8634 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)F142.CB) [> 3.5508 = 5.9180 < 7.6934] w=0.8608 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)G133.CA) [> 3.7081 = 6.1802 < 8.0343] w=0.8608 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)V155.CB) [> 3.7060 = 6.1767 < 8.0297] w=0.8556 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)Y61.CB) [> 3.6224 = 6.0374 < 7.8486] w=0.8556 to align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)I99.CB) [> 3.7358 = 6.2263 < 8.0942] w=0.8430 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)A139.CB) [> 3.0919 = 5.1532 < 6.6991] w=0.8418 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)M143.CB) [> 3.5038 = 5.8398 < 7.5917] w=0.8367 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)S154.CB) [> 4.1231 = 6.8718 < 8.9334] w=0.8297 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)V155.CB) [> 3.7316 = 6.2193 < 8.0851] w=0.8037 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)V102.CB) [> 3.9624 = 6.6041 < 8.5853] w=0.7856 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)L147.CB) [> 4.1589 = 6.9314 < 9.0108] w=0.7830 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)I131.CB) [> 4.6160 = 7.6934 < 10.0014] w=0.7830 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)F142.CB) [> 4.0447 = 6.7412 < 8.7636] w=0.7804 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)I96.CB) [> 2.9178 = 4.8630 < 6.3219] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)G133.CA) [> 3.8753 = 6.4588 < 8.3965] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)K132.CB) [> 3.6425 = 6.0709 < 7.8921] w=0.7778 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)I134.CB) [> 4.5279 = 7.5465 < 9.8104] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)I134.CB) [> 4.2654 = 7.1090 < 9.2416] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)V102.CB) [> 4.2963 = 7.1605 < 9.3086] w=0.7778 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)K74.CB) [> 4.3389 = 7.2314 < 9.4009] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V64.CB) [> 4.2314 = 7.0524 < 9.1681] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)T138.CB) [> 4.5516 = 7.5859 < 9.8617] w=0.7589 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)A89.CB) [> 3.7090 = 6.1816 < 8.0361] w=0.7519 to align # Constraint # added constraint: constraint((T0323)N38.CB, (T0323)S146.CB) [> 3.9561 = 6.5935 < 8.5716] w=0.7519 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)L153.CB) [> 3.7037 = 6.1728 < 8.0247] w=0.7519 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)L128.CB) [> 4.6351 = 7.7251 < 10.0427] w=0.7052 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)S146.CB) [> 4.0767 = 6.7945 < 8.8329] w=0.7001 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)V64.CB) [> 4.3441 = 7.2401 < 9.4121] w=0.7000 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)I131.CB) [> 4.2729 = 7.1214 < 9.2579] w=0.7000 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)M141.CB) [> 4.1835 = 6.9724 < 9.0642] w=0.7000 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)L78.CB) [> 3.2870 = 5.4783 < 7.1218] w=0.6756 to align # Constraint # added constraint: constraint((T0323)M143.CB, (T0323)V152.CB) [> 2.8463 = 4.7438 < 6.1669] w=0.6741 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)Q77.CB) [> 2.6510 = 4.4183 < 5.7438] w=0.6678 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)L179.CB) [> 3.0704 = 5.1173 < 6.6525] w=0.6482 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)F145.CB) [> 3.5522 = 5.9203 < 7.6964] w=0.6482 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)Y189.CB) [> 2.9690 = 4.9483 < 6.4328] w=0.6482 to align # Constraint # added constraint: constraint((T0323)A121.CB, (T0323)M143.CB) [> 3.6807 = 6.1345 < 7.9748] w=0.6482 to align # Constraint # added constraint: constraint((T0323)N170.CB, (T0323)H182.CB) [> 3.8208 = 6.3681 < 8.2785] w=0.6482 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)V106.CB) [> 4.5145 = 7.5241 < 9.7813] w=0.6300 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)T138.CB) [> 3.8246 = 6.3743 < 8.2866] w=0.6275 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)G183.CA) [> 3.5498 = 5.9163 < 7.6912] w=0.6223 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)L179.CB) [> 3.8286 = 6.3810 < 8.2953] w=0.6223 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)W186.CB) [> 3.7212 = 6.2019 < 8.0625] w=0.6223 to align # Constraint # added constraint: constraint((T0323)K95.CB, (T0323)G133.CA) [> 4.3635 = 7.2724 < 9.4542] w=0.6222 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)I134.CB) [> 4.4563 = 7.4271 < 9.6552] w=0.6222 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)Y61.CB) [> 4.2388 = 7.0647 < 9.1841] w=0.6222 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)L78.CB) [> 4.1936 = 6.9892 < 9.0860] w=0.5963 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)L86.CB) [> 4.1223 = 6.8706 < 8.9318] w=0.5963 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)S154.CB) [> 3.1931 = 5.3218 < 6.9184] w=0.5963 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)V152.CB) [> 2.7579 = 4.5965 < 5.9755] w=0.5963 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)S154.CB) [> 2.9584 = 4.9307 < 6.4099] w=0.5963 to align # Constraint # added constraint: constraint((T0323)P37.CB, (T0323)S146.CB) [> 2.9994 = 4.9989 < 6.4986] w=0.5963 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L179.CB) [> 3.4786 = 5.7976 < 7.5369] w=0.5900 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)E190.CB) [> 4.1700 = 6.9500 < 9.0349] w=0.5704 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)A85.CB) [> 3.9024 = 6.5040 < 8.4551] w=0.5704 to align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)K95.CB) [> 4.4373 = 7.3954 < 9.6140] w=0.5704 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)Q88.CB) [> 3.6010 = 6.0016 < 7.8021] w=0.5445 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)K132.CB) [> 4.2867 = 7.1446 < 9.2879] w=0.5445 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)V192.CB) [> 3.4824 = 5.8039 < 7.5451] w=0.5185 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)L195.CB) [> 3.4103 = 5.6838 < 7.3890] w=0.5185 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)C194.CB) [> 3.9192 = 6.5320 < 8.4916] w=0.5185 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)Y196.CB) [> 4.0825 = 6.8042 < 8.8454] w=0.5185 to align # Constraint # added constraint: constraint((T0323)D18.CB, (T0323)W186.CB) [> 3.6662 = 6.1103 < 7.9434] w=0.5185 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)L179.CB) [> 4.0585 = 6.7642 < 8.7934] w=0.5185 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)V91.CB) [> 3.4419 = 5.7366 < 7.4575] w=0.4978 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)L167.CB) [> 3.4551 = 5.7585 < 7.4861] w=0.4926 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)L197.CB) [> 3.7263 = 6.2105 < 8.0736] w=0.4926 to align # Constraint # added constraint: constraint((T0323)N170.CB, (T0323)L179.CB) [> 3.7948 = 6.3247 < 8.2221] w=0.4926 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V102.CB) [> 4.3428 = 7.2380 < 9.4095] w=0.4745 to align # Constraint # added constraint: constraint((T0323)E49.CB, (T0323)T138.CB) [> 4.4042 = 7.3404 < 9.5425] w=0.4719 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)V155.CB) [> 4.5227 = 7.5378 < 9.7992] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)Y196.CB) [> 2.8850 = 4.8083 < 6.2508] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)T191.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)T191.CB) [> 3.1648 = 5.2747 < 6.8571] w=0.4667 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)K176.CB) [> 3.9488 = 6.5812 < 8.5556] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)I99.CB) [> 4.4647 = 7.4412 < 9.6735] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)C103.CB) [> 4.6553 = 7.7589 < 10.0865] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)L150.CB) [> 4.4375 = 7.3958 < 9.6145] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)C194.CB) [> 3.2905 = 5.4841 < 7.1293] w=0.4667 to align # Constraint # added constraint: constraint((T0323)I25.CB, (T0323)Y196.CB) [> 3.5688 = 5.9479 < 7.7323] w=0.4667 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)C194.CB) [> 4.2618 = 7.1030 < 9.2339] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)W198.CB) [> 4.0355 = 6.7258 < 8.7435] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)L197.CB) [> 4.0750 = 6.7917 < 8.8292] w=0.4667 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)S146.CB) [> 4.4902 = 7.4836 < 9.7287] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)M143.CB) [> 3.5553 = 5.9254 < 7.7031] w=0.4656 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)G90.CA) [> 4.1380 = 6.8967 < 8.9658] w=0.4459 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)F113.CB) [> 4.0491 = 6.7485 < 8.7731] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A121.CB, (T0323)V152.CB) [> 3.8244 = 6.3740 < 8.2863] w=0.4408 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)E190.CB) [> 4.4209 = 7.3682 < 9.5786] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)Y196.CB) [> 3.6786 = 6.1309 < 7.9702] w=0.4408 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)L72.CB) [> 2.7372 = 4.5621 < 5.9307] w=0.4408 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)L72.CB) [> 4.5364 = 7.5607 < 9.8289] w=0.4408 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)A89.CB) [> 3.0760 = 5.1266 < 6.6646] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)A89.CB) [> 3.3923 = 5.6538 < 7.3499] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A57.CB, (T0323)A89.CB) [> 3.7778 = 6.2963 < 8.1852] w=0.4408 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)A193.CB) [> 3.8038 = 6.3397 < 8.2416] w=0.4408 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)L197.CB) [> 4.1840 = 6.9734 < 9.0654] w=0.4408 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)Y189.CB) [> 4.0481 = 6.7469 < 8.7709] w=0.4148 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)E190.CB) [> 3.0090 = 5.0149 < 6.5194] w=0.4148 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)V152.CB) [> 4.6598 = 7.7663 < 10.0962] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)L195.CB) [> 3.4805 = 5.8008 < 7.5410] w=0.4148 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)E73.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)C194.CB) [> 4.1272 = 6.8787 < 8.9423] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)K184.CB) [> 3.5650 = 5.9417 < 7.7243] w=0.4148 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)W198.CB) [> 4.0691 = 6.7819 < 8.8165] w=0.4148 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)G156.CA) [> 3.3017 = 5.5028 < 7.1536] w=0.4148 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)G90.CA) [> 4.3856 = 7.3093 < 9.5021] w=0.3941 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)G133.CA) [> 4.3648 = 7.2746 < 9.4570] w=0.3941 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)T138.CB) [> 4.1943 = 6.9904 < 9.0875] w=0.3941 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)T114.CB) [> 3.7756 = 6.2926 < 8.1804] w=0.3889 to align # Constraint # added constraint: constraint((T0323)A59.CB, (T0323)Q88.CB) [> 3.8693 = 6.4489 < 8.3835] w=0.3889 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)L147.CB) [> 3.2001 = 5.3334 < 6.9335] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)A89.CB) [> 4.0703 = 6.7838 < 8.8189] w=0.3889 to align # Constraint # added constraint: constraint((T0323)R87.CB, (T0323)I96.CB) [> 2.7155 = 4.5258 < 5.8835] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)L147.CB) [> 3.3866 = 5.6443 < 7.3376] w=0.3889 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)T191.CB) [> 3.5586 = 5.9310 < 7.7102] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)T191.CB) [> 2.8317 = 4.7196 < 6.1354] w=0.3889 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)V91.CB) [> 4.2305 = 7.0509 < 9.1662] w=0.3889 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)E65.CB) [> 3.8544 = 6.4240 < 8.3512] w=0.3889 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)G90.CA) [> 4.3790 = 7.2984 < 9.4879] w=0.3630 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)V91.CB) [> 3.4020 = 5.6701 < 7.3711] w=0.3630 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)A119.CB) [> 3.9552 = 6.5920 < 8.5696] w=0.3630 to align # Constraint # added constraint: constraint((T0323)E117.CB, (T0323)G148.CA) [> 3.9101 = 6.5168 < 8.4719] w=0.3371 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)I25.CB) [> 3.2077 = 5.3462 < 6.9501] w=0.3371 to align # Constraint # added constraint: constraint((T0323)Q32.CB, (T0323)L195.CB) [> 4.4215 = 7.3692 < 9.5800] w=0.3371 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)T191.CB) [> 4.5234 = 7.5389 < 9.8006] w=0.3371 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)F113.CB) [> 2.7170 = 4.5283 < 5.8868] w=0.3371 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)I180.CB) [> 4.3926 = 7.3210 < 9.5173] w=0.3371 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)V81.CB) [> 4.1073 = 6.8455 < 8.8992] w=0.3370 to align # Constraint # added constraint: constraint((T0323)M143.CB, (T0323)L153.CB) [> 3.1475 = 5.2458 < 6.8196] w=0.3370 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)R149.CB) [> 3.7843 = 6.3072 < 8.1994] w=0.3307 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)V91.CB) [> 4.5623 = 7.6038 < 9.8850] w=0.3163 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)A139.CB) [> 4.7016 = 7.8361 < 10.1869] w=0.3163 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)G135.CA) [> 4.4735 = 7.4558 < 9.6926] w=0.3163 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)Y196.CB) [> 4.6749 = 7.7916 < 10.1290] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)A193.CB) [> 2.8728 = 4.7880 < 6.2244] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)Y196.CB) [> 4.6111 = 7.6851 < 9.9907] w=0.3111 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)Y168.CB) [> 4.0872 = 6.8120 < 8.8556] w=0.3111 to align # Constraint # added constraint: constraint((T0323)Q32.CB, (T0323)V192.CB) [> 4.4122 = 7.3536 < 9.5597] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L197.CB) [> 4.5781 = 7.6302 < 9.9193] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)W186.CB) [> 3.4416 = 5.7360 < 7.4569] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)A187.CB) [> 4.2803 = 7.1338 < 9.2739] w=0.3111 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)D157.CB) [> 4.6341 = 7.7235 < 10.0406] w=0.3111 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)E65.CB) [> 4.4226 = 7.3709 < 9.5822] w=0.3111 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)G156.CA) [> 4.4477 = 7.4129 < 9.6367] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)K127.CB) [> 3.5527 = 5.9211 < 7.6975] w=0.2852 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)L128.CB) [> 4.3513 = 7.2522 < 9.4278] w=0.2852 to align # Constraint # added constraint: constraint((T0323)G183.CA, (T0323)A193.CB) [> 4.5512 = 7.5854 < 9.8610] w=0.2852 to align # Constraint # added constraint: constraint((T0323)R110.CB, (T0323)K127.CB) [> 4.4940 = 7.4900 < 9.7369] w=0.2852 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)V192.CB) [> 4.1087 = 6.8478 < 8.9022] w=0.2852 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)G118.CA) [> 3.4295 = 5.7158 < 7.4306] w=0.2852 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)W198.CB) [> 3.5538 = 5.9229 < 7.6998] w=0.2852 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L179.CB) [> 4.0956 = 6.8261 < 8.8739] w=0.2852 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)L195.CB) [> 3.8009 = 6.3348 < 8.2352] w=0.2593 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)A119.CB) [> 3.1991 = 5.3319 < 6.9315] w=0.2593 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)L214.CB) [> 4.0356 = 6.7259 < 8.7437] w=0.2593 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)S45.CB) [> 2.9903 = 4.9838 < 6.4789] w=0.2593 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)E120.CB) [> 4.2234 = 7.0390 < 9.1507] w=0.2529 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)Y61.CB) [> 4.2270 = 7.0451 < 9.1586] w=0.2411 to align # Constraint # added constraint: constraint((T0323)G183.CA, (T0323)C194.CB) [> 4.5511 = 7.5851 < 9.8607] w=0.2359 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)F142.CB) [> 4.7601 = 7.9336 < 10.3137] w=0.2334 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)Y189.CB) [> 4.7464 = 7.9107 < 10.2839] w=0.2334 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)M143.CB) [> 4.7757 = 7.9595 < 10.3473] w=0.2334 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)K95.CB) [> 4.5540 = 7.5899 < 9.8669] w=0.2334 to align # Constraint # added constraint: constraint((T0323)A119.CB, (T0323)F142.CB) [> 4.2836 = 7.1393 < 9.2811] w=0.2334 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)L195.CB) [> 4.2887 = 7.1478 < 9.2921] w=0.2334 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)A187.CB) [> 4.2506 = 7.0844 < 9.2097] w=0.2333 to align # Constraint # added constraint: constraint((T0323)K165.CB, (T0323)L179.CB) [> 4.2846 = 7.1409 < 9.2832] w=0.2333 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)W198.CB) [> 3.5721 = 5.9534 < 7.7395] w=0.2333 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)L160.CB) [> 4.6231 = 7.7052 < 10.0168] w=0.2333 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)A200.CB) [> 3.4181 = 5.6968 < 7.4059] w=0.2100 to align # Constraint # added constraint: constraint((T0323)T138.CB, (T0323)S154.CB) [> 4.6769 = 7.7948 < 10.1332] w=0.2074 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)G156.CA) [> 4.3736 = 7.2893 < 9.4761] w=0.2074 to align # Constraint # added constraint: constraint((T0323)A205.CB, (T0323)L214.CB) [> 4.4604 = 7.4341 < 9.6643] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A201.CB) [> 3.7987 = 6.3311 < 8.2304] w=0.2074 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)L195.CB) [> 3.2551 = 5.4251 < 7.0527] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)L197.CB) [> 4.1544 = 6.9240 < 9.0012] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)A200.CB) [> 4.5989 = 7.6649 < 9.9644] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A200.CB) [> 3.4360 = 5.7267 < 7.4448] w=0.2074 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)A164.CB) [> 3.9683 = 6.6138 < 8.5979] w=0.1815 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)W198.CB) [> 4.4271 = 7.3785 < 9.5921] w=0.1815 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)A193.CB) [> 3.9512 = 6.5854 < 8.5610] w=0.1815 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)L167.CB) [> 4.2210 = 7.0350 < 9.1454] w=0.1815 to align # Constraint # added constraint: constraint((T0323)I25.CB, (T0323)L195.CB) [> 3.8568 = 6.4281 < 8.3565] w=0.1815 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)Y196.CB) [> 3.3866 = 5.6443 < 7.3376] w=0.1815 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)G202.CA) [> 3.8602 = 6.4336 < 8.3637] w=0.1815 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)Y208.CB) [> 4.1723 = 6.9538 < 9.0400] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)I54.CB) [> 4.0663 = 6.7772 < 8.8104] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)S58.CB) [> 4.1845 = 6.9742 < 9.0665] w=0.1815 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)R209.CB) [> 4.1533 = 6.9223 < 8.9989] w=0.1815 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)S210.CB) [> 3.5232 = 5.8720 < 7.6336] w=0.1815 to align # Constraint # added constraint: constraint((T0323)A139.CB, (T0323)L153.CB) [> 4.3894 = 7.3157 < 9.5104] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V81.CB, (T0323)I96.CB) [> 4.5728 = 7.6213 < 9.9077] w=0.1752 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)H182.CB) [> 4.0414 = 6.7357 < 8.7563] w=0.1556 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)G90.CA) [> 4.4531 = 7.4219 < 9.6485] w=0.1556 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)S58.CB) [> 4.7151 = 7.8584 < 10.2160] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)W186.CB) [> 4.3752 = 7.2920 < 9.4796] w=0.1556 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)A85.CB) [> 3.4609 = 5.7681 < 7.4985] w=0.1556 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)A201.CB) [> 2.6594 = 4.4323 < 5.7619] w=0.1556 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)L195.CB) [> 3.7784 = 6.2974 < 8.1866] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)Y196.CB) [> 3.8459 = 6.4099 < 8.3329] w=0.1556 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)L197.CB) [> 4.2183 = 7.0304 < 9.1396] w=0.1556 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)G202.CA) [> 3.7250 = 6.2082 < 8.0707] w=0.1556 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)K127.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)W198.CB) [> 3.7598 = 6.2663 < 8.1462] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)V192.CB) [> 3.8771 = 6.4618 < 8.4004] w=0.1556 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)A200.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.1556 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)C194.CB) [> 3.8148 = 6.3579 < 8.2653] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)G183.CA) [> 4.4857 = 7.4762 < 9.7190] w=0.1556 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)H182.CB) [> 3.6764 = 6.1273 < 7.9654] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)V81.CB) [> 4.6634 = 7.7724 < 10.1041] w=0.1555 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)G183.CA) [> 4.3292 = 7.2153 < 9.3799] w=0.1555 to align # Constraint # added constraint: constraint((T0323)S82.CB, (T0323)I99.CB) [> 4.1430 = 6.9050 < 8.9766] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)Q32.CB) [> 3.5466 = 5.9109 < 7.6842] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)L33.CB) [> 3.5538 = 5.9230 < 7.7000] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)A193.CB) [> 4.2858 = 7.1430 < 9.2859] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)W198.CB) [> 3.2139 = 5.3566 < 6.9636] w=0.1296 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)E115.CB) [> 4.3180 = 7.1967 < 9.3557] w=0.1296 to align # Constraint # added constraint: constraint((T0323)K74.CB, (T0323)D112.CB) [> 4.1597 = 6.9329 < 9.0127] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Q23.CB, (T0323)L215.CB) [> 2.9072 = 4.8453 < 6.2989] w=0.1296 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)S210.CB) [> 3.5220 = 5.8701 < 7.6311] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G148.CA, (T0323)V192.CB) [> 3.7827 = 6.3045 < 8.1959] w=0.1296 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)L214.CB) [> 3.2394 = 5.3990 < 7.0187] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)L215.CB) [> 3.4564 = 5.7607 < 7.4888] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L214.CB) [> 2.6665 = 4.4442 < 5.7775] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)E213.CB) [> 4.3322 = 7.2203 < 9.3864] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)S210.CB) [> 3.7248 = 6.2080 < 8.0704] w=0.1296 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)K199.CB) [> 3.8687 = 6.4479 < 8.3823] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)K199.CB) [> 3.0412 = 5.0686 < 6.5891] w=0.1296 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)L211.CB) [> 3.9658 = 6.6096 < 8.5925] w=0.1296 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)Y196.CB) [> 3.7395 = 6.2326 < 8.1023] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)L197.CB) [> 4.3126 = 7.1877 < 9.3440] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)I180.CB) [> 4.1579 = 6.9298 < 9.0087] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)G171.CA) [> 4.3048 = 7.1747 < 9.3270] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)F113.CB) [> 3.1389 = 5.2315 < 6.8009] w=0.1037 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)G183.CA) [> 3.7270 = 6.2116 < 8.0751] w=0.1037 to align # Constraint # added constraint: constraint((T0323)R2.CB, (T0323)P34.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.1037 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)K176.CB) [> 3.0074 = 5.0123 < 6.5160] w=0.1037 to align # Constraint # added constraint: constraint((T0323)T35.CB, (T0323)A57.CB) [> 3.6808 = 6.1347 < 7.9751] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L178.CB) [> 3.8744 = 6.4574 < 8.3946] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P34.CB, (T0323)L195.CB) [> 4.4542 = 7.4237 < 9.6508] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)L78.CB) [> 4.2489 = 7.0815 < 9.2059] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F113.CB, (T0323)A139.CB) [> 3.3012 = 5.5020 < 7.1526] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)G109.CA) [> 3.3983 = 5.6638 < 7.3630] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)V192.CB) [> 4.1478 = 6.9130 < 8.9868] w=0.1037 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)C194.CB) [> 3.5369 = 5.8948 < 7.6632] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)L195.CB) [> 3.9480 = 6.5800 < 8.5540] w=0.1037 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)Y196.CB) [> 4.3035 = 7.1725 < 9.3242] w=0.1037 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)S92.CB) [> 2.5996 = 4.3327 < 5.6325] w=0.1037 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)S92.CB) [> 4.4350 = 7.3917 < 9.6092] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)V91.CB) [> 4.5568 = 7.5947 < 9.8732] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A57.CB, (T0323)V91.CB) [> 4.6293 = 7.7155 < 10.0302] w=0.1037 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)Y196.CB) [> 3.6272 = 6.0453 < 7.8589] w=0.1037 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)A57.CB) [> 4.6051 = 7.6751 < 9.9776] w=0.0856 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)L197.CB) [> 3.6295 = 6.0491 < 7.8639] w=0.0778 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)L195.CB) [> 3.9121 = 6.5202 < 8.4763] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)I96.CB) [> 4.5918 = 7.6529 < 9.9488] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)I134.CB) [> 4.7119 = 7.8531 < 10.2091] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)D157.CB) [> 4.4857 = 7.4761 < 9.7189] w=0.0778 to align # Constraint # added constraint: constraint((T0323)R94.CB, (T0323)K132.CB) [> 4.3647 = 7.2745 < 9.4568] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)C194.CB) [> 4.4227 = 7.3712 < 9.5826] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)Y196.CB) [> 4.5452 = 7.5753 < 9.8479] w=0.0778 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)C194.CB) [> 4.7251 = 7.8752 < 10.2378] w=0.0778 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)L211.CB) [> 4.6756 = 7.7927 < 10.1305] w=0.0778 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)A205.CB) [> 4.5070 = 7.5116 < 9.7651] w=0.0778 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)Y196.CB) [> 4.4651 = 7.4418 < 9.6743] w=0.0778 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)R209.CB) [> 4.0241 = 6.7069 < 8.7190] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)V68.CB) [> 3.6201 = 6.0335 < 7.8436] w=0.0778 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)A164.CB) [> 4.0591 = 6.7652 < 8.7947] w=0.0778 to align # Constraint # added constraint: constraint((T0323)F22.CB, (T0323)V192.CB) [> 3.5179 = 5.8631 < 7.6221] w=0.0778 to align # Constraint # added constraint: constraint((T0323)T123.CB, (T0323)L147.CB) [> 3.5405 = 5.9009 < 7.6712] w=0.0778 to align # Constraint # added constraint: constraint((T0323)R149.CB, (T0323)V158.CB) [> 3.1665 = 5.2776 < 6.8609] w=0.0588 to align # Constraint # added constraint: constraint((T0323)E49.CB, (T0323)S92.CB) [> 4.3935 = 7.3225 < 9.5193] w=0.0519 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)A71.CB) [> 4.6988 = 7.8313 < 10.1806] w=0.0519 to align # Constraint # added constraint: constraint((T0323)Y61.CB, (T0323)A71.CB) [> 4.2355 = 7.0592 < 9.1769] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L178.CB) [> 3.8247 = 6.3745 < 8.2869] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A205.CB) [> 4.2461 = 7.0768 < 9.1998] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)L21.CB) [> 3.7747 = 6.2911 < 8.1784] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)Y189.CB) [> 3.7944 = 6.3240 < 8.2212] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)V192.CB) [> 3.7908 = 6.3180 < 8.2134] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L195.CB) [> 4.5100 = 7.5166 < 9.7716] w=0.0519 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)K199.CB) [> 4.3519 = 7.2532 < 9.4291] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)Y196.CB) [> 4.3939 = 7.3232 < 9.5202] w=0.0519 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)L214.CB) [> 4.4098 = 7.3496 < 9.5545] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V68.CB) [> 4.5189 = 7.5316 < 9.7911] w=0.0519 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)A193.CB) [> 3.3871 = 5.6452 < 7.3388] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A139.CB, (T0323)V152.CB) [> 4.4483 = 7.4138 < 9.6380] w=0.0519 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)I134.CB) [> 3.1994 = 5.3323 < 6.9320] w=0.0519 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)G135.CA) [> 3.2079 = 5.3465 < 6.9504] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)A187.CB) [> 3.6683 = 6.1138 < 7.9479] w=0.0518 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)S210.CB) [> 4.4512 = 7.4187 < 9.6443] w=0.0518 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)C194.CB) [> 3.8630 = 6.4383 < 8.3698] w=0.0518 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)A193.CB) [> 3.0806 = 5.1343 < 6.6746] w=0.0518 to align # Constraint # added constraint: constraint((T0323)C103.CB, (T0323)D157.CB) [> 3.2717 = 5.4529 < 7.0887] w=0.0392 to align # Constraint # added constraint: constraint((T0323)C103.CB, (T0323)R149.CB) [> 4.0552 = 6.7586 < 8.7862] w=0.0392 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)S210.CB) [> 4.4407 = 7.4012 < 9.6215] w=0.0259 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)E207.CB) [> 4.7971 = 7.9952 < 10.3938] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)F113.CB) [> 4.6569 = 7.7616 < 10.0900] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)G169.CA) [> 3.2775 = 5.4624 < 7.1011] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)T35.CB) [> 3.6613 = 6.1022 < 7.9329] w=0.0259 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)A205.CB) [> 4.1933 = 6.9888 < 9.0854] w=0.0259 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)W198.CB) [> 3.8071 = 6.3451 < 8.2487] w=0.0259 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)V155.CB) [> 4.6603 = 7.7671 < 10.0972] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L178.CB) [> 4.2101 = 7.0169 < 9.1219] w=0.0259 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L197.CB) [> 4.5861 = 7.6435 < 9.9365] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)N170.CB) [> 3.8530 = 6.4217 < 8.3482] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V158.CB, (T0323)L211.CB) [> 4.3925 = 7.3209 < 9.5172] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V158.CB, (T0323)A200.CB) [> 4.3845 = 7.3075 < 9.4998] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y208.CB, (T0323)H217.CB) [> 4.5914 = 7.6523 < 9.9480] w=0.0259 to align # Constraint # added constraint: constraint((T0323)A205.CB, (T0323)Q220.CB) [> 4.4938 = 7.4897 < 9.7366] w=0.0259 to align # Constraint # added constraint: constraint((T0323)G169.CA, (T0323)Q220.CB) [> 4.6300 = 7.7167 < 10.0317] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)E213.CB) [> 4.7513 = 7.9189 < 10.2945] w=0.0259 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)Y208.CB) [> 3.9949 = 6.6582 < 8.6557] w=0.0259 to align # Constraint # added constraint: constraint((T0323)R149.CB, (T0323)A193.CB) [> 4.4091 = 7.3485 < 9.5530] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)I134.CB) [> 4.5171 = 7.5286 < 9.7871] w=0.0259 to align # Constraint # added constraint: constraint((T0323)S82.CB, (T0323)K93.CB) [> 4.5299 = 7.5498 < 9.8147] w=0.0196 to align # Constraint # added constraint: constraint((T0323)K165.CB, (T0323)I180.CB) [> 3.7286 = 6.2143 < 8.0786] w=0.0196 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)I99.CB) [> 4.5569 = 7.5948 < 9.8732] w=0.0078 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)G135.CA) [> 3.2385 = 5.3976 < 7.0168] w=0.0052 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)V91.CB) [> 4.2206 = 7.0344 < 9.1447] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I54.CB, (T0323)M141.CB) [> 3.4939 = 5.8231 < 7.5701] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)K132.CB) [> 4.4906 = 7.4844 < 9.7297] w=0.0052 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)L147.CB) [> 3.8728 = 6.4547 < 8.3912] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I54.CB, (T0323)Y196.CB) [> 3.5068 = 5.8447 < 7.5981] w=0.0026 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)G169.CA) [> 3.4714 = 5.7857 < 7.5215] w=0.0026 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 702, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 706, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 686, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 690, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 692, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 4 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)L128.O and (T0323)T129.N only 0.000 apart, marking (T0323)T129.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)G218.O and (T0323)N219.N only 0.000 apart, marking (T0323)N219.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)K36.O and (T0323)P37.N only 0.000 apart, marking (T0323)P37.N as missing WARNING: atoms too close: (T0323)V68.O and (T0323)G69.N only 0.000 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)D83.O and (T0323)E84.N only 0.000 apart, marking (T0323)E84.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 262 model score -0.1359 model score -0.1440 model score -0.1744 model score -0.1202 model score -0.0191 model score -0.1482 model score -0.2634 model score -0.1814 model score -0.1568 model score -0.1623 model score -0.1857 model score -0.1750 model score -0.1752 model score -0.1345 model score -0.1842 model score -0.4015 model score -0.4070 model score -0.3117 model score 0.1938 model score -0.0112 model score 1.3181 model score 1.5594 model score 1.3368 model score 1.3228 model score 1.2431 model score -0.2508 model score -0.1714 model score -0.1851 model score -0.1775 model score -0.1850 model score -0.1808 model score -0.3201 model score -0.3246 model score -0.4174 model score -0.3479 model score -0.0508 model score -0.0545 model score 0.3143 model score 0.0007 model score -0.0591 model score 0.0630 model score -0.2351 model score 1.2781 model score 1.2781 model score 1.2776 model score 1.2781 model score 1.2780 model score -0.2095 model score -0.1968 model score -0.1830 model score -0.0548 model score -0.3465 model score -0.2938 model score -0.3201 model score -0.4174 model score -0.3246 model score -0.2176 model score -0.3491 model score -0.3744 model score 0.2496 model score 0.3205 model score 0.9835 model score 1.2765 model score 1.2768 model score 1.2764 model score 1.2765 model score 1.2775 model score 1.2765 model score 1.2768 model score 1.2764 model score 1.2775 model score 1.2769 model score 2.2066 model score 2.4629 model score 2.4834 model score 2.2323 model score 2.2761 model score -0.1811 model score -0.0394 model score 0.3125 model score 0.4558 model score 0.3131 model score 1.2766 model score 1.2758 model score 1.2786 model score 1.2771 model score 1.2752 model score -0.1829 model score -0.0613 model score -0.0424 model score -0.1910 model score -0.2173 model score -0.2078 model score -0.1223 model score -0.1871 model score -0.1410 model score -0.3121 model score -0.1991 model score -0.2336 model score -0.2336 model score -0.2264 model score 1.5923 model score 1.6774 model score 1.2505 model score 1.5777 model score -0.0046 model score -0.1060 model score -0.0988 model score -0.1291 model score -0.3231 model score 1.2744 model score 1.8714 model score -0.4365 model score -0.1563 model score 2.0624 model score -0.0915 model score -0.3867 model score 1.8764 model score -0.1477 model score 0.2565 model score 2.0624 model score -0.4356 model score -0.2832 model score -0.3674 model score -0.3150 model score -0.3786 model score -0.0046 model score -0.2908 model score -0.2896 model score -0.3091 model score -0.2860 model score -0.2917 model score -0.2978 model score -0.3073 model score -0.2714 model score -0.2558 model score -0.3044 model score -0.2627 model score -0.2436 model score -0.1620 model score -0.2466 model score -0.2277 model score -0.1952 model score 0.0981 model score 0.1454 model score 0.1266 model score 0.1266 model score 0.1342 model score -0.2436 model score -0.2436 model score 0.0227 model score -0.0621 model score -0.0621 model score -0.3232 model score -0.2840 model score -0.2079 model score -0.3299 model score -0.1872 model score -0.1768 model score 0.0436 model score -0.0246 model score -0.3129 model score 0.0892 model score -0.2012 model score 0.0093 model score -0.0644 model score -0.3402 model score 0.0764 model score 0.2659 model score 0.1301 model score 0.2294 model score 0.1863 model score 0.0884 model score 0.1025 model score 0.1620 model score 0.1524 model score -0.1003 model score 1.2771 model score 1.2771 model score 1.2766 model score 1.2767 model score 1.2771 model score 1.2748 model score 1.2745 model score 1.2771 model score 1.2767 model score 1.2766 model score 0.0816 model score -0.1471 model score -0.1670 model score -0.4413 model score 0.0511 model score -0.2083 model score -0.1096 model score -0.3299 model score 0.0954 model score 0.2866 model score -0.2083 model score -0.1096 model score -0.3171 model score 0.0326 model score -0.0363 model score -0.0885 model score -0.2074 model score -0.3290 model score 0.0572 model score 0.0680 model score 1.2765 model score 1.2771 model score 1.2766 model score 1.2786 model score 1.2764 model score -0.2468 model score 1.2765 model score 1.2771 model score 1.2766 model score 1.2771 model score 1.2756 model score -0.2452 model score -0.3045 model score -0.3441 model score -0.3750 model score -0.2264 model score -0.1382 model score -0.1883 model score 1.2771 model score 1.2772 model score 1.2766 model score 1.2757 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2767 model score 1.2771 model score -0.0790 model score -0.0690 model score -0.0372 model score -0.0953 model score -0.1120 model score 2.3096 model score 2.2699 model score 2.1680 model score 2.4182 model score 2.0633 model score -0.1975 model score -0.2859 model score -0.0752 model score 0.0631 model score -0.2850 model score -0.2605 model score -0.2064 model score -0.2498 model score -0.2687 model score -0.4745 model score 0.3226 model score -0.2785 model score 0.2200 model score -0.2483 model score 0.2626 model score -0.2214 model score -0.0337 weight: 0.8970 eval: -0.1359 min: -0.4745 max: 2.4834 weight: 0.8995 eval: -0.1440 min: -0.4745 max: 2.4834 weight: 0.9087 eval: -0.1744 min: -0.4745 max: 2.4834 weight: 0.8922 eval: -0.1202 min: -0.4745 max: 2.4834 weight: 0.8614 eval: -0.0191 min: -0.4745 max: 2.4834 weight: 0.9007 eval: -0.1482 min: -0.4745 max: 2.4834 weight: 0.9358 eval: -0.2634 min: -0.4745 max: 2.4834 weight: 0.9108 eval: -0.1814 min: -0.4745 max: 2.4834 weight: 0.9033 eval: -0.1568 min: -0.4745 max: 2.4834 weight: 0.9050 eval: -0.1623 min: -0.4745 max: 2.4834 weight: 0.9121 eval: -0.1857 min: -0.4745 max: 2.4834 weight: 0.9089 eval: -0.1750 min: -0.4745 max: 2.4834 weight: 0.9089 eval: -0.1752 min: -0.4745 max: 2.4834 weight: 0.8965 eval: -0.1345 min: -0.4745 max: 2.4834 weight: 0.9117 eval: -0.1842 min: -0.4745 max: 2.4834 weight: 0.9778 eval: -0.4015 min: -0.4745 max: 2.4834 weight: 0.9795 eval: -0.4070 min: -0.4745 max: 2.4834 weight: 0.9505 eval: -0.3117 min: -0.4745 max: 2.4834 weight: 0.7966 eval: 0.1938 min: -0.4745 max: 2.4834 weight: 0.8590 eval: -0.0112 min: -0.4745 max: 2.4834 weight: 0.4546 eval: 1.3181 min: -0.4745 max: 2.4834 weight: 0.3811 eval: 1.5594 min: -0.4745 max: 2.4834 weight: 0.4489 eval: 1.3368 min: -0.4745 max: 2.4834 weight: 0.4531 eval: 1.3228 min: -0.4745 max: 2.4834 weight: 0.4774 eval: 1.2431 min: -0.4745 max: 2.4834 weight: 0.9319 eval: -0.2508 min: -0.4745 max: 2.4834 weight: 0.9078 eval: -0.1714 min: -0.4745 max: 2.4834 weight: 0.9119 eval: -0.1851 min: -0.4745 max: 2.4834 weight: 0.9096 eval: -0.1775 min: -0.4745 max: 2.4834 weight: 0.9119 eval: -0.1850 min: -0.4745 max: 2.4834 weight: 0.9106 eval: -0.1808 min: -0.4745 max: 2.4834 weight: 0.9530 eval: -0.3201 min: -0.4745 max: 2.4834 weight: 0.9544 eval: -0.3246 min: -0.4745 max: 2.4834 weight: 0.9826 eval: -0.4174 min: -0.4745 max: 2.4834 weight: 0.9615 eval: -0.3479 min: -0.4745 max: 2.4834 weight: 0.8711 eval: -0.0508 min: -0.4745 max: 2.4834 weight: 0.8722 eval: -0.0545 min: -0.4745 max: 2.4834 weight: 0.7600 eval: 0.3143 min: -0.4745 max: 2.4834 weight: 0.8554 eval: 0.0007 min: -0.4745 max: 2.4834 weight: 0.8736 eval: -0.0591 min: -0.4745 max: 2.4834 weight: 0.8365 eval: 0.0630 min: -0.4745 max: 2.4834 weight: 0.9272 eval: -0.2351 min: -0.4745 max: 2.4834 weight: 0.4667 eval: 1.2781 min: -0.4745 max: 2.4834 weight: 0.4667 eval: 1.2781 min: -0.4745 max: 2.4834 weight: 0.4669 eval: 1.2776 min: -0.4745 max: 2.4834 weight: 0.4667 eval: 1.2781 min: -0.4745 max: 2.4834 weight: 0.4668 eval: 1.2780 min: -0.4745 max: 2.4834 weight: 0.9194 eval: -0.2095 min: -0.4745 max: 2.4834 weight: 0.9155 eval: -0.1968 min: -0.4745 max: 2.4834 weight: 0.9113 eval: -0.1830 min: -0.4745 max: 2.4834 weight: 0.8723 eval: -0.0548 min: -0.4745 max: 2.4834 weight: 0.9611 eval: -0.3465 min: -0.4745 max: 2.4834 weight: 0.9450 eval: -0.2938 min: -0.4745 max: 2.4834 weight: 0.9530 eval: -0.3201 min: -0.4745 max: 2.4834 weight: 0.9826 eval: -0.4174 min: -0.4745 max: 2.4834 weight: 0.9544 eval: -0.3246 min: -0.4745 max: 2.4834 weight: 0.9218 eval: -0.2176 min: -0.4745 max: 2.4834 weight: 0.9619 eval: -0.3491 min: -0.4745 max: 2.4834 weight: 0.9695 eval: -0.3744 min: -0.4745 max: 2.4834 weight: 0.7797 eval: 0.2496 min: -0.4745 max: 2.4834 weight: 0.7581 eval: 0.3205 min: -0.4745 max: 2.4834 weight: 0.5564 eval: 0.9835 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2765 min: -0.4745 max: 2.4834 weight: 0.4671 eval: 1.2768 min: -0.4745 max: 2.4834 weight: 0.4673 eval: 1.2764 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2765 min: -0.4745 max: 2.4834 weight: 0.4669 eval: 1.2775 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2765 min: -0.4745 max: 2.4834 weight: 0.4671 eval: 1.2768 min: -0.4745 max: 2.4834 weight: 0.4673 eval: 1.2764 min: -0.4745 max: 2.4834 weight: 0.4669 eval: 1.2775 min: -0.4745 max: 2.4834 weight: 0.4671 eval: 1.2769 min: -0.4745 max: 2.4834 weight: 0.1842 eval: 2.2066 min: -0.4745 max: 2.4834 weight: 0.1062 eval: 2.4629 min: -0.4745 max: 2.4834 weight: 0.1000 eval: 2.4834 min: -0.4745 max: 2.4834 weight: 0.1764 eval: 2.2323 min: -0.4745 max: 2.4834 weight: 0.1631 eval: 2.2761 min: -0.4745 max: 2.4834 weight: 0.9107 eval: -0.1811 min: -0.4745 max: 2.4834 weight: 0.8676 eval: -0.0394 min: -0.4745 max: 2.4834 weight: 0.7605 eval: 0.3125 min: -0.4745 max: 2.4834 weight: 0.7169 eval: 0.4558 min: -0.4745 max: 2.4834 weight: 0.7604 eval: 0.3131 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.4674 eval: 1.2758 min: -0.4745 max: 2.4834 weight: 0.4666 eval: 1.2786 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4676 eval: 1.2752 min: -0.4745 max: 2.4834 weight: 0.9113 eval: -0.1829 min: -0.4745 max: 2.4834 weight: 0.8743 eval: -0.0613 min: -0.4745 max: 2.4834 weight: 0.8685 eval: -0.0424 min: -0.4745 max: 2.4834 weight: 0.9137 eval: -0.1910 min: -0.4745 max: 2.4834 weight: 0.9217 eval: -0.2173 min: -0.4745 max: 2.4834 weight: 0.9189 eval: -0.2078 min: -0.4745 max: 2.4834 weight: 0.8928 eval: -0.1223 min: -0.4745 max: 2.4834 weight: 0.9126 eval: -0.1871 min: -0.4745 max: 2.4834 weight: 0.8985 eval: -0.1410 min: -0.4745 max: 2.4834 weight: 0.9506 eval: -0.3121 min: -0.4745 max: 2.4834 weight: 0.9162 eval: -0.1991 min: -0.4745 max: 2.4834 weight: 0.9267 eval: -0.2336 min: -0.4745 max: 2.4834 weight: 0.9267 eval: -0.2336 min: -0.4745 max: 2.4834 weight: 0.9245 eval: -0.2264 min: -0.4745 max: 2.4834 weight: 0.3711 eval: 1.5923 min: -0.4745 max: 2.4834 weight: 0.3452 eval: 1.6774 min: -0.4745 max: 2.4834 weight: 0.4751 eval: 1.2505 min: -0.4745 max: 2.4834 weight: 0.3756 eval: 1.5777 min: -0.4745 max: 2.4834 weight: 0.8570 eval: -0.0046 min: -0.4745 max: 2.4834 weight: 0.8879 eval: -0.1060 min: -0.4745 max: 2.4834 weight: 0.8857 eval: -0.0988 min: -0.4745 max: 2.4834 weight: 0.8949 eval: -0.1291 min: -0.4745 max: 2.4834 weight: 0.9539 eval: -0.3231 min: -0.4745 max: 2.4834 weight: 0.4679 eval: 1.2744 min: -0.4745 max: 2.4834 weight: 0.2862 eval: 1.8714 min: -0.4745 max: 2.4834 weight: 0.9884 eval: -0.4365 min: -0.4745 max: 2.4834 weight: 0.9032 eval: -0.1563 min: -0.4745 max: 2.4834 weight: 0.2281 eval: 2.0624 min: -0.4745 max: 2.4834 weight: 0.8835 eval: -0.0915 min: -0.4745 max: 2.4834 weight: 0.9733 eval: -0.3867 min: -0.4745 max: 2.4834 weight: 0.2847 eval: 1.8764 min: -0.4745 max: 2.4834 weight: 0.9005 eval: -0.1477 min: -0.4745 max: 2.4834 weight: 0.7776 eval: 0.2565 min: -0.4745 max: 2.4834 weight: 0.2281 eval: 2.0624 min: -0.4745 max: 2.4834 weight: 0.9882 eval: -0.4356 min: -0.4745 max: 2.4834 weight: 0.9418 eval: -0.2832 min: -0.4745 max: 2.4834 weight: 0.9674 eval: -0.3674 min: -0.4745 max: 2.4834 weight: 0.9515 eval: -0.3150 min: -0.4745 max: 2.4834 weight: 0.9708 eval: -0.3786 min: -0.4745 max: 2.4834 weight: 0.8570 eval: -0.0046 min: -0.4745 max: 2.4834 weight: 0.9441 eval: -0.2908 min: -0.4745 max: 2.4834 weight: 0.9437 eval: -0.2896 min: -0.4745 max: 2.4834 weight: 0.9497 eval: -0.3091 min: -0.4745 max: 2.4834 weight: 0.9426 eval: -0.2860 min: -0.4745 max: 2.4834 weight: 0.9444 eval: -0.2917 min: -0.4745 max: 2.4834 weight: 0.9462 eval: -0.2978 min: -0.4745 max: 2.4834 weight: 0.9491 eval: -0.3073 min: -0.4745 max: 2.4834 weight: 0.9382 eval: -0.2714 min: -0.4745 max: 2.4834 weight: 0.9334 eval: -0.2558 min: -0.4745 max: 2.4834 weight: 0.9482 eval: -0.3044 min: -0.4745 max: 2.4834 weight: 0.9356 eval: -0.2627 min: -0.4745 max: 2.4834 weight: 0.9298 eval: -0.2436 min: -0.4745 max: 2.4834 weight: 0.9049 eval: -0.1620 min: -0.4745 max: 2.4834 weight: 0.9307 eval: -0.2466 min: -0.4745 max: 2.4834 weight: 0.9249 eval: -0.2277 min: -0.4745 max: 2.4834 weight: 0.9150 eval: -0.1952 min: -0.4745 max: 2.4834 weight: 0.8258 eval: 0.0981 min: -0.4745 max: 2.4834 weight: 0.8114 eval: 0.1454 min: -0.4745 max: 2.4834 weight: 0.8171 eval: 0.1266 min: -0.4745 max: 2.4834 weight: 0.8171 eval: 0.1266 min: -0.4745 max: 2.4834 weight: 0.8148 eval: 0.1342 min: -0.4745 max: 2.4834 weight: 0.9298 eval: -0.2436 min: -0.4745 max: 2.4834 weight: 0.9298 eval: -0.2436 min: -0.4745 max: 2.4834 weight: 0.8487 eval: 0.0227 min: -0.4745 max: 2.4834 weight: 0.8745 eval: -0.0621 min: -0.4745 max: 2.4834 weight: 0.8745 eval: -0.0621 min: -0.4745 max: 2.4834 weight: 0.9540 eval: -0.3232 min: -0.4745 max: 2.4834 weight: 0.9420 eval: -0.2840 min: -0.4745 max: 2.4834 weight: 0.9189 eval: -0.2079 min: -0.4745 max: 2.4834 weight: 0.9560 eval: -0.3299 min: -0.4745 max: 2.4834 weight: 0.9126 eval: -0.1872 min: -0.4745 max: 2.4834 weight: 0.9094 eval: -0.1768 min: -0.4745 max: 2.4834 weight: 0.8424 eval: 0.0436 min: -0.4745 max: 2.4834 weight: 0.8631 eval: -0.0246 min: -0.4745 max: 2.4834 weight: 0.9508 eval: -0.3129 min: -0.4745 max: 2.4834 weight: 0.8285 eval: 0.0892 min: -0.4745 max: 2.4834 weight: 0.9169 eval: -0.2012 min: -0.4745 max: 2.4834 weight: 0.8528 eval: 0.0093 min: -0.4745 max: 2.4834 weight: 0.8752 eval: -0.0644 min: -0.4745 max: 2.4834 weight: 0.9591 eval: -0.3402 min: -0.4745 max: 2.4834 weight: 0.8324 eval: 0.0764 min: -0.4745 max: 2.4834 weight: 0.7747 eval: 0.2659 min: -0.4745 max: 2.4834 weight: 0.8160 eval: 0.1301 min: -0.4745 max: 2.4834 weight: 0.7858 eval: 0.2294 min: -0.4745 max: 2.4834 weight: 0.7989 eval: 0.1863 min: -0.4745 max: 2.4834 weight: 0.8287 eval: 0.0884 min: -0.4745 max: 2.4834 weight: 0.8244 eval: 0.1025 min: -0.4745 max: 2.4834 weight: 0.8063 eval: 0.1620 min: -0.4745 max: 2.4834 weight: 0.8092 eval: 0.1524 min: -0.4745 max: 2.4834 weight: 0.8861 eval: -0.1003 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2767 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4677 eval: 1.2748 min: -0.4745 max: 2.4834 weight: 0.4678 eval: 1.2745 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2767 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.8308 eval: 0.0816 min: -0.4745 max: 2.4834 weight: 0.9004 eval: -0.1471 min: -0.4745 max: 2.4834 weight: 0.9064 eval: -0.1670 min: -0.4745 max: 2.4834 weight: 0.9899 eval: -0.4413 min: -0.4745 max: 2.4834 weight: 0.8401 eval: 0.0511 min: -0.4745 max: 2.4834 weight: 0.9190 eval: -0.2083 min: -0.4745 max: 2.4834 weight: 0.8890 eval: -0.1096 min: -0.4745 max: 2.4834 weight: 0.9560 eval: -0.3299 min: -0.4745 max: 2.4834 weight: 0.8266 eval: 0.0954 min: -0.4745 max: 2.4834 weight: 0.7684 eval: 0.2866 min: -0.4745 max: 2.4834 weight: 0.9190 eval: -0.2083 min: -0.4745 max: 2.4834 weight: 0.8890 eval: -0.1096 min: -0.4745 max: 2.4834 weight: 0.9521 eval: -0.3171 min: -0.4745 max: 2.4834 weight: 0.8457 eval: 0.0326 min: -0.4745 max: 2.4834 weight: 0.8667 eval: -0.0363 min: -0.4745 max: 2.4834 weight: 0.8826 eval: -0.0885 min: -0.4745 max: 2.4834 weight: 0.9187 eval: -0.2074 min: -0.4745 max: 2.4834 weight: 0.9557 eval: -0.3290 min: -0.4745 max: 2.4834 weight: 0.8382 eval: 0.0572 min: -0.4745 max: 2.4834 weight: 0.8349 eval: 0.0680 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2765 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.4666 eval: 1.2786 min: -0.4745 max: 2.4834 weight: 0.4673 eval: 1.2764 min: -0.4745 max: 2.4834 weight: 0.9307 eval: -0.2468 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2765 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4675 eval: 1.2756 min: -0.4745 max: 2.4834 weight: 0.9302 eval: -0.2452 min: -0.4745 max: 2.4834 weight: 0.9483 eval: -0.3045 min: -0.4745 max: 2.4834 weight: 0.9603 eval: -0.3441 min: -0.4745 max: 2.4834 weight: 0.9697 eval: -0.3750 min: -0.4745 max: 2.4834 weight: 0.9245 eval: -0.2264 min: -0.4745 max: 2.4834 weight: 0.8977 eval: -0.1382 min: -0.4745 max: 2.4834 weight: 0.9129 eval: -0.1883 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2772 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2766 min: -0.4745 max: 2.4834 weight: 0.4674 eval: 1.2757 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.4672 eval: 1.2767 min: -0.4745 max: 2.4834 weight: 0.4670 eval: 1.2771 min: -0.4745 max: 2.4834 weight: 0.8797 eval: -0.0790 min: -0.4745 max: 2.4834 weight: 0.8766 eval: -0.0690 min: -0.4745 max: 2.4834 weight: 0.8669 eval: -0.0372 min: -0.4745 max: 2.4834 weight: 0.8846 eval: -0.0953 min: -0.4745 max: 2.4834 weight: 0.8897 eval: -0.1120 min: -0.4745 max: 2.4834 weight: 0.1529 eval: 2.3096 min: -0.4745 max: 2.4834 weight: 0.1650 eval: 2.2699 min: -0.4745 max: 2.4834 weight: 0.1959 eval: 2.1680 min: -0.4745 max: 2.4834 weight: 0.1198 eval: 2.4182 min: -0.4745 max: 2.4834 weight: 0.2278 eval: 2.0633 min: -0.4745 max: 2.4834 weight: 0.9157 eval: -0.1975 min: -0.4745 max: 2.4834 weight: 0.9426 eval: -0.2859 min: -0.4745 max: 2.4834 weight: 0.8785 eval: -0.0752 min: -0.4745 max: 2.4834 weight: 0.8364 eval: 0.0631 min: -0.4745 max: 2.4834 weight: 0.9423 eval: -0.2850 min: -0.4745 max: 2.4834 weight: 0.9349 eval: -0.2605 min: -0.4745 max: 2.4834 weight: 0.9184 eval: -0.2064 min: -0.4745 max: 2.4834 weight: 0.9316 eval: -0.2498 min: -0.4745 max: 2.4834 weight: 0.9374 eval: -0.2687 min: -0.4745 max: 2.4834 weight: 1.0000 eval: -0.4745 min: -0.4745 max: 2.4834 weight: 0.7575 eval: 0.3226 min: -0.4745 max: 2.4834 weight: 0.9404 eval: -0.2785 min: -0.4745 max: 2.4834 weight: 0.7887 eval: 0.2200 min: -0.4745 max: 2.4834 weight: 0.9312 eval: -0.2483 min: -0.4745 max: 2.4834 weight: 0.7757 eval: 0.2626 min: -0.4745 max: 2.4834 weight: 0.9230 eval: -0.2214 min: -0.4745 max: 2.4834 weight: 0.8659 eval: -0.0337 min: -0.4745 max: 2.4834 Adding 7498 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -366.6776, CN propb: -366.6776 weights: 0.3762 constraints: 401 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 401 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 401 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 7097 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 7097 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 7498 # command: