# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/ # command:# Making conformation for sequence T0323 numbered 1 through 221 Created new target T0323 from T0323.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fn7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1fn7A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1fn7A/merged-good-all-a2m.gz for input Trying 1fn7A/merged-good-all-a2m Error: Couldn't open file 1fn7A/merged-good-all-a2m or 1fn7A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abk/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2abk expands to /projects/compbio/data/pdb/2abk.pdb.gz 2abk:Warning: there is no chain 2abk will retry with 2abkA Skipped atom 1276, because occupancy 0.5 <= existing 0.500 in 2abk Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1280, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1282, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1284, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1493, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1495, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1497, because occupancy 0.500 <= existing 0.500 in 2abk Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 2abk # T0323 read from 2abk/merged-good-all-a2m # 2abk read from 2abk/merged-good-all-a2m # adding 2abk to template set # found chain 2abk in template set T0323 15 :VAQDSRLFQFIEIAGEVQLPTKP 2abk 4 :AKRLEILTRLRENNPHPTTELNF # choosing archetypes in rotamer library T0323 38 :NPFQSLVSSIVEQQLSIKAASAIYGRV 2abk 28 :SPFELLIAVLLSAQATDVSVNKATAKL T0323 68 :VGGAL 2abk 55 :YPVAN T0323 74 :KPEQLYRVSDEAL 2abk 60 :TPAAMLELGVEGV T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLD 2abk 77 :KTIGLYNSKAENIIKTCRILLEQHNG T0323 118 :GAEAT 2abk 103 :EVPED T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 2abk 108 :RAALEALPGVGRKTANVVLNTAFGWP T0323 152 :VLSV 2abk 134 :TIAV T0323 157 :DVGLQRGAKWL 2abk 138 :DTHIFRVCNRT T0323 169 :GNGEGDGKKLLIYHGKAWAPYETVACLYLW 2abk 149 :QFAPGKNVEQVEEKLLKVVPAEFKVDCHHW T0323 199 :KAAGTFA 2abk 186 :TCIARKP T0323 210 :SLEELLHHGNQ 2abk 193 :RCGSCIIEDLC Number of specific fragments extracted= 12 number of extra gaps= 0 total=12 Number of alignments=1 # 2abk read from 2abk/merged-good-all-a2m # found chain 2abk in template set T0323 14 :IVAQDSRLFQFIEIAGEVQLPT 2abk 3 :KAKRLEILTRLRENNPHPTTEL T0323 36 :KPNPFQSLVSSIVEQQLSIKAASAIYGRV 2abk 26 :FSSPFELLIAVLLSAQATDVSVNKATAKL T0323 68 :VGGAL 2abk 55 :YPVAN T0323 74 :KPEQLYRVSDEAL 2abk 60 :TPAAMLELGVEGV T0323 87 :RQAGVSKRKIEYIRHVCEHVES 2abk 77 :KTIGLYNSKAENIIKTCRILLE T0323 114 :TELEGAEAT 2abk 99 :QHNGEVPED T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 2abk 108 :RAALEALPGVGRKTANVVLNTAFGWP T0323 152 :VLSV 2abk 134 :TIAV T0323 157 :DVGLQRGAKWLYGNGEG 2abk 138 :DTHIFRVCNRTQFAPGK T0323 175 :GKKLLIYHGKAWAP 2abk 155 :NVEQVEEKLLKVVP T0323 189 :YETVACLYLW 2abk 172 :KVDCHHWLIL T0323 199 :K 2abk 187 :C T0323 200 :AAGTFAEEYRSLEELLHHGN 2abk 189 :ARKPRCGSCIIEDLCEYKEK Number of specific fragments extracted= 13 number of extra gaps= 0 total=25 Number of alignments=2 # 2abk read from 2abk/merged-good-all-a2m # found chain 2abk in template set T0323 16 :AQDSRLFQFIEIAGEVQLP 2abk 5 :KRLEILTRLRENNPHPTTE T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRV 2abk 25 :NFSSPFELLIAVLLSAQATDVSVNKATAKL T0323 68 :VGG 2abk 55 :YPV T0323 72 :LEKPEQLYRVSDE 2abk 58 :ANTPAAMLELGVE T0323 85 :ALRQAGVSKRKIEYIRHVCEHVESG 2abk 75 :YIKTIGLYNSKAENIIKTCRILLEQ T0323 117 :EGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRL 2abk 100 :HNGEVPEDRAALEALPGVGRKTANVVLNTAFGWP T0323 153 :LSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 2abk 134 :TIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPA T0323 194 :CLYLWKAAGTFAEE 2abk 175 :CHHWLILHGRYTCI T0323 211 :LEELLHHGNQ 2abk 189 :ARKPRCGSCI Number of specific fragments extracted= 9 number of extra gaps= 0 total=34 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1muyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1muyA expands to /projects/compbio/data/pdb/1muy.pdb.gz 1muyA:# T0323 read from 1muyA/merged-good-all-a2m # 1muyA read from 1muyA/merged-good-all-a2m # adding 1muyA to template set # found chain 1muyA in template set Warning: unaligning (T0323)E49 because of BadResidue code BAD_PEPTIDE in next template residue (1muyA)Q41 Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE at template residue (1muyA)Q41 T0323 15 :VAQDSRLFQFIEIAG 1muyA 5 :QFSAQVLDWYDKYGR T0323 30 :EVQLPTKPNPFQSLVSSIV 1muyA 21 :TLPWQIDKTPYKVWLSEVM T0323 51 :QLSIKAASAIYGRVEQL 1muyA 42 :QTQVATVIPYFERFMAR T0323 72 :LEKPEQLYRVSDEAL 1muyA 59 :FPTVTDLANAPLDEV T0323 87 :RQAGV 1muyA 76 :LWTGL T0323 92 :SKRKIEYIRHVCEHVESGRLD 1muyA 82 :YYARARNLHKAAQQVATLHGG T0323 118 :GAEAT 1muyA 103 :KFPET T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1muyA 108 :FEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNGEGDG 1muyA 134 :FPILDGNVKRVLARCYAVSGWPG T0323 176 :KKLLIYHGKAWAPYETVACLYLW 1muyA 161 :ENKLWSLSEQVTPAVGVERFNQA T0323 199 :KAAGT 1muyA 191 :ICTRS T0323 208 :YRSLEELLHHGN 1muyA 196 :KPKCSLCPLQNG Number of specific fragments extracted= 12 number of extra gaps= 1 total=46 Number of alignments=4 # 1muyA read from 1muyA/merged-good-all-a2m # found chain 1muyA in template set Warning: unaligning (T0323)E49 because of BadResidue code BAD_PEPTIDE in next template residue (1muyA)Q41 Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE at template residue (1muyA)Q41 T0323 14 :IVAQDSRLFQFIEIAG 1muyA 4 :SQFSAQVLDWYDKYGR T0323 30 :EVQLPTKPNPFQSLVSSIV 1muyA 21 :TLPWQIDKTPYKVWLSEVM T0323 51 :QLSIKAASAIYGRVEQLV 1muyA 42 :QTQVATVIPYFERFMARF T0323 73 :EKPEQLYRVSDEAL 1muyA 60 :PTVTDLANAPLDEV T0323 87 :RQAGV 1muyA 76 :LWTGL T0323 92 :SKRKIEYIRHVCEHVES 1muyA 82 :YYARARNLHKAAQQVAT T0323 114 :TELEGAEAT 1muyA 99 :LHGGKFPET T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1muyA 108 :FEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 1muyA 134 :FPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSE T0323 189 :YETVACLYLW 1muyA 177 :VERFNQAMMD T0323 199 :K 1muyA 192 :C T0323 200 :AAGTFAEEYRSLEELLH 1muyA 194 :RSKPKCSLCPLQNGCIA Number of specific fragments extracted= 12 number of extra gaps= 1 total=58 Number of alignments=5 # 1muyA read from 1muyA/merged-good-all-a2m # found chain 1muyA in template set Warning: unaligning (T0323)E49 because of BadResidue code BAD_PEPTIDE in next template residue (1muyA)Q41 Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE at template residue (1muyA)Q41 T0323 16 :AQDSRLFQFIEIAGEVQLP 1muyA 5 :QFSAQVLDWYDKYGRKTLP T0323 35 :TKPNPFQSLVSSIV 1muyA 26 :IDKTPYKVWLSEVM T0323 51 :QLSIKAASAIYGRVEQLV 1muyA 42 :QTQVATVIPYFERFMARF T0323 73 :EKPEQLYRVSDE 1muyA 60 :PTVTDLANAPLD T0323 85 :ALRQAGV 1muyA 76 :LWTGLGY T0323 93 :KRKIEYIRHVCEHVES 1muyA 83 :YARARNLHKAAQQVAT T0323 109 :GRL 1muyA 102 :GKF T0323 122 :TTVIEKLTAIKGIGQWTAEMFMMFSLGRL 1muyA 105 :PETFEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNG 1muyA 134 :FPILDGNVKRVLARCYAVS T0323 172 :EGDGKKLLIYHGKAWAP 1muyA 157 :KKEVENKLWSLSEQVTP T0323 189 :YETVACLYLWKAAG 1muyA 176 :GVERFNQAMMDLGA T0323 207 :EYRSLEELLHHGN 1muyA 190 :MICTRSKPKCSLC Number of specific fragments extracted= 12 number of extra gaps= 1 total=70 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ebmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ebmA expands to /projects/compbio/data/pdb/1ebm.pdb.gz 1ebmA:# T0323 read from 1ebmA/merged-good-all-a2m # 1ebmA read from 1ebmA/merged-good-all-a2m # adding 1ebmA to template set # found chain 1ebmA in template set T0323 4 :FSTD 1ebmA 102 :LDVT T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1ebmA 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1ebmA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFG T0323 70 :GALEKPEQLYR 1ebmA 179 :HGFPSLQALAG T0323 83 :DEALRQAGVSK 1ebmA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLDFTEL 1ebmA 204 :RARYVSASARAILEEQGGLAWL T0323 117 :EGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ebmA 229 :RESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ebmA 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGK 1ebmA 289 :KGPSP T0323 177 :KLLIYHGKA 1ebmA 297 :KELGNFFRS T0323 186 :WAPYETVACLYLW 1ebmA 307 :WGPYAGWAQAVLF Number of specific fragments extracted= 11 number of extra gaps= 0 total=81 Number of alignments=7 # 1ebmA read from 1ebmA/merged-good-all-a2m # found chain 1ebmA in template set T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1ebmA 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG 1ebmA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP T0323 71 :ALEKPEQLYR 1ebmA 180 :GFPSLQALAG T0323 83 :DEALRQAGVSK 1ebmA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRL 1ebmA 204 :RARYVSASARAILEEQG T0323 112 :DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ebmA 224 :WLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ebmA 268 :DVHMWHIAQRDYSWH T0323 172 :EGDG 1ebmA 289 :KGPS T0323 176 :KKLLIYHGKAWAP 1ebmA 296 :NKELGNFFRSLWG T0323 189 :YETVACLYLW 1ebmA 310 :YAGWAQAVLF Number of specific fragments extracted= 10 number of extra gaps= 0 total=91 Number of alignments=8 # 1ebmA read from 1ebmA/merged-good-all-a2m # found chain 1ebmA in template set T0323 2 :RYFSTDSPE 1ebmA 100 :FQLDVTLAQ T0323 11 :VKTIVAQDSRLFQFIEIAGEVQLP 1ebmA 110 :YHHWGSVDSHFQEVAQKFQGVRLL T0323 36 :KPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1ebmA 134 :RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPR T0323 72 :LEKPEQLYR 1ebmA 181 :FPSLQALAG T0323 81 :VSDEALRQAGV 1ebmA 191 :EVEAHLRKLGL T0323 93 :KRKIEYIRHVCEHVESGRL 1ebmA 202 :GYRARYVSASARAILEEQG T0323 112 :DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ebmA 224 :WLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ebmA 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYH 1ebmA 289 :KGPSPQTNKEL T0323 183 :GKAWAPYETVACLYLWKAA 1ebmA 304 :RSLWGPYAGWAQAVLFSAD Number of specific fragments extracted= 10 number of extra gaps= 0 total=101 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yqrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1yqrA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1yqrA/merged-good-all-a2m.gz for input Trying 1yqrA/merged-good-all-a2m Error: Couldn't open file 1yqrA/merged-good-all-a2m or 1yqrA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pu6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0323 read from 1pu6A/merged-good-all-a2m # 1pu6A read from 1pu6A/merged-good-all-a2m # found chain 1pu6A in training set T0323 18 :DSRLFQFIEI 1pu6A 5 :FEILKALKSL T0323 28 :AGEVQ 1pu6A 17 :LKNAP T0323 33 :LP 1pu6A 25 :WP T0323 38 :NPFQSLVSSIVEQQLSIKAASAIYGRVEQL 1pu6A 29 :LKFEALLGAVLTQNTKFEAVLKSLENLKNA T0323 69 :GGALEK 1pu6A 59 :FILEND T0323 75 :PEQLYRVSDEAL 1pu6A 69 :LKKIAYIEFSKL T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLDFT 1pu6A 85 :RPSGFYNQKAKRLIDLSGNILKDFQSFE T0323 115 :ELEGAEAT 1pu6A 114 :FKQEVTRE T0323 127 :KLTAIKGIGQWTAEMFMMFSLGR 1pu6A 122 :WLLDQKGIGKESADAILCYACAK T0323 151 :DVLSV 1pu6A 145 :EVMVV T0323 157 :DVGLQRGAKWL 1pu6A 150 :DKYSYLFLKKL T0323 169 :GNGEG 1pu6A 161 :GIEIE T0323 175 :GKKLLIYHGKAWAPYE 1pu6A 166 :DYDELQHFFEKGVQEN Number of specific fragments extracted= 13 number of extra gaps= 0 total=114 Number of alignments=10 # 1pu6A read from 1pu6A/merged-good-all-a2m # found chain 1pu6A in training set Warning: unaligning (T0323)W198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pu6A)I206 T0323 17 :QDSRLFQFIEI 1pu6A 4 :SFEILKALKSL T0323 28 :AGEVQLPTKPNP 1pu6A 17 :LKNAPAWWWPNA T0323 40 :FQSLVSSIVEQQLSIKAASAIYGRVEQL 1pu6A 31 :FEALLGAVLTQNTKFEAVLKSLENLKNA T0323 69 :GGALEK 1pu6A 59 :FILEND T0323 75 :PEQLYRVSDEAL 1pu6A 69 :LKKIAYIEFSKL T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLDFT 1pu6A 85 :RPSGFYNQKAKRLIDLSGNILKDFQSFE T0323 115 :ELEGAEAT 1pu6A 114 :FKQEVTRE T0323 127 :KLTAIKGIGQWTAEMFMMFSLGR 1pu6A 122 :WLLDQKGIGKESADAILCYACAK T0323 151 :DVLSV 1pu6A 145 :EVMVV T0323 157 :DVGLQRGAKWLYG 1pu6A 150 :DKYSYLFLKKLGI T0323 171 :GEG 1pu6A 163 :EIE T0323 175 :GKKLLIYHGKAWAP 1pu6A 166 :DYDELQHFFEKGVQ T0323 189 :YETVACLYL 1pu6A 195 :LAQLYARFH Number of specific fragments extracted= 13 number of extra gaps= 0 total=127 Number of alignments=11 # 1pu6A read from 1pu6A/merged-good-all-a2m # found chain 1pu6A in training set Warning: unaligning (T0323)K199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pu6A)I206 Warning: unaligning (T0323)A201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pu6A)I206 T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1pu6A 26 :PNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILE T0323 73 :EKPEQLYRV 1pu6A 63 :NDDEINLKK T0323 82 :SDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEG 1pu6A 80 :LAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQ T0323 119 :AE 1pu6A 118 :VT T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1pu6A 120 :REWLLDQKGIGKESADAILCYACAKE T0323 153 :LSVGDVGLQRGAKWL 1pu6A 146 :VMVVDKYSYLFLKKL T0323 169 :GNGEGDGKKLLIYHGKAWAPY 1pu6A 161 :GIEIEDYDELQHFFEKGVQEN T0323 190 :ETVACLYLW 1pu6A 195 :LAQLYARFH T0323 202 :GTFAEEYRSLE 1pu6A 207 :VEFSKQKLELK Number of specific fragments extracted= 9 number of extra gaps= 0 total=136 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ornA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0323 read from 1ornA/merged-good-all-a2m # 1ornA read from 1ornA/merged-good-all-a2m # found chain 1ornA in training set T0323 15 :VAQDSRLFQFIEIAGEVQLPTKP 1ornA 5 :QQIRYCLDEMAKMFPDAHCELVH T0323 38 :NPFQSLVSSIVEQQLSIKAASAIYGRVEQL 1ornA 29 :NPFELLIAVVLSAQCTDALVNKVTKRLFEK T0323 72 :LEKPEQLYRVSDEAL 1ornA 59 :YRTPHDYIAVPLEEL T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLD 1ornA 78 :RSIGLYRNKARNIQKLCAMLIDKYNG T0323 118 :GAEAT 1ornA 104 :EVPRD T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1ornA 109 :RDELMKLPGVGRKTANVVVSVAFGVP T0323 152 :VLSV 1ornA 135 :AIAV T0323 157 :DVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLW 1ornA 139 :DTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHR T0323 199 :KAAGTFA 1ornA 188 :HCKAQSP T0323 210 :SLEELLHHGN 1ornA 195 :QCPSCPLLHL Number of specific fragments extracted= 10 number of extra gaps= 0 total=146 Number of alignments=13 # 1ornA read from 1ornA/merged-good-all-a2m # found chain 1ornA in training set T0323 14 :IVAQDSRLFQFIEIAGEVQLPT 1ornA 4 :KQQIRYCLDEMAKMFPDAHCEL T0323 36 :KPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1ornA 27 :HRNPFELLIAVVLSAQCTDALVNKVTKRLFEKY T0323 73 :EKPEQLYRVSDEAL 1ornA 60 :RTPHDYIAVPLEEL T0323 87 :RQAGVSKRKIEYIRHVCEHVES 1ornA 78 :RSIGLYRNKARNIQKLCAMLID T0323 114 :TELEGAEAT 1ornA 100 :KYNGEVPRD T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1ornA 109 :RDELMKLPGVGRKTANVVVSVAFGVP T0323 152 :VLSV 1ornA 135 :AIAV T0323 157 :DVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 1ornA 139 :DTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP T0323 189 :YETVACLYLW 1ornA 174 :WSITHHRMIF T0323 199 :K 1ornA 189 :C T0323 200 :AAGTFAEEYRSLEELLH 1ornA 191 :AQSPQCPSCPLLHLCRE Number of specific fragments extracted= 11 number of extra gaps= 0 total=157 Number of alignments=14 # 1ornA read from 1ornA/merged-good-all-a2m # found chain 1ornA in training set T0323 7 :DSPEVKTI 1ornA 3 :TKQQIRYC T0323 21 :LFQFIEIAGEVQLP 1ornA 11 :LDEMAKMFPDAHCE T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1ornA 26 :VHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKY T0323 73 :EKPEQLYRVSDEAL 1ornA 60 :RTPHDYIAVPLEEL T0323 87 :RQAGVSKRKIEYIRHVCEHVES 1ornA 78 :RSIGLYRNKARNIQKLCAMLID T0323 109 :GRL 1ornA 103 :GEV T0323 112 :DFT 1ornA 108 :DRD T0323 127 :KLTAIKGIGQWTAEMFMMFSLGRL 1ornA 111 :ELMKLPGVGRKTANVVVSVAFGVP T0323 153 :LSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 1ornA 135 :AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP T0323 189 :YETVACLYLWKAA 1ornA 173 :EWSITHHRMIFFG T0323 206 :EEYRSLEELLHHGNQ 1ornA 186 :RYHCKAQSPQCPSCP Number of specific fragments extracted= 11 number of extra gaps= 0 total=168 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lwyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lwyA expands to /projects/compbio/data/pdb/1lwy.pdb.gz 1lwyA:# T0323 read from 1lwyA/merged-good-all-a2m # 1lwyA read from 1lwyA/merged-good-all-a2m # adding 1lwyA to template set # found chain 1lwyA in template set T0323 4 :FSTD 1lwyA 102 :LDVT T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1lwyA 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1lwyA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFG T0323 70 :GALEKPEQLYR 1lwyA 179 :HGFPSLQALAG T0323 83 :DEALRQAGVSK 1lwyA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1lwyA 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1lwyA 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1lwyA 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGK 1lwyA 289 :KGPSP T0323 177 :KLLIYHGKA 1lwyA 297 :KELGNFFRS T0323 186 :WAPYETVACLYLW 1lwyA 307 :WGPYAGWAQAVLF Number of specific fragments extracted= 11 number of extra gaps= 0 total=179 Number of alignments=16 # 1lwyA read from 1lwyA/merged-good-all-a2m # found chain 1lwyA in template set T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1lwyA 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG 1lwyA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP T0323 71 :ALEKPEQLYR 1lwyA 180 :GFPSLQALAG T0323 83 :DEALRQAGVSK 1lwyA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1lwyA 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1lwyA 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1lwyA 268 :DVHMWHIAQRDYSWH T0323 173 :GDG 1lwyA 290 :GPS T0323 176 :KKLLIYHGKAWAP 1lwyA 296 :NKELGNFFRSLWG T0323 189 :YETVACLYLW 1lwyA 310 :YAGWAQAVLF Number of specific fragments extracted= 10 number of extra gaps= 0 total=189 Number of alignments=17 # 1lwyA read from 1lwyA/merged-good-all-a2m # found chain 1lwyA in template set T0323 2 :RYFSTDSPE 1lwyA 100 :FQLDVTLAQ T0323 11 :VKTIVAQDSRLFQFIEIAGEVQLP 1lwyA 110 :YHHWGSVDSHFQEVAQKFQGVRLL T0323 36 :KPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1lwyA 134 :RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPR T0323 72 :LEKPEQLYR 1lwyA 181 :FPSLQALAG T0323 81 :VSDEALRQAGV 1lwyA 191 :EVEAHLRKLGL T0323 93 :KRKIEYIRHVCEHVESGRL 1lwyA 202 :GYRARYVSASARAILEEQG T0323 112 :DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1lwyA 224 :WLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1lwyA 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYH 1lwyA 289 :KGPSPQTNKEL T0323 183 :GKAWAPYETVACLYLWKAAG 1lwyA 304 :RSLWGPYAGWAQAVLFSADL Number of specific fragments extracted= 10 number of extra gaps= 0 total=199 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2csbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2csbA expands to /projects/compbio/data/pdb/2csb.pdb.gz 2csbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2044, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2046, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2048, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2050, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2052, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2054, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 2056, because occupancy 0.400 <= existing 0.600 in 2csbA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2751, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2753, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2755, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2757, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2759, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2761, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2763, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2808, because occupancy 0.500 <= existing 0.500 in 2csbA Skipped atom 2810, because occupancy 0.500 <= existing 0.500 in 2csbA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3905, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 3907, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 3909, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 3911, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 4115, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 4117, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 4119, because occupancy 0.400 <= existing 0.600 in 2csbA Skipped atom 4121, because occupancy 0.400 <= existing 0.600 in 2csbA # T0323 read from 2csbA/merged-good-all-a2m # 2csbA read from 2csbA/merged-good-all-a2m # adding 2csbA to template set # found chain 2csbA in template set Warning: unaligning (T0323)A16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2csbA)R250 Warning: unaligning (T0323)Q17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2csbA)R250 T0323 4 :FSTDSPEVKTIV 2csbA 236 :IEYDERTAKRHV T0323 18 :DSRLFQFIEIAG 2csbA 251 :DRLLEELYEHLE T0323 30 :EVQLPTKP 2csbA 266 :ERYLRHPL T0323 38 :NPFQSLVSSIVEQQ 2csbA 276 :RWIVEHKRDIMRRY T0323 53 :SIKAASAIYGRVEQLVG 2csbA 290 :LEQRIVECALKLQDRYG T0323 74 :KPEQLYRVSDEAL 2csbA 376 :SIAGILATDLEEI T0323 87 :RQAGVSKRKIEYIRHVC 2csbA 393 :EEGRLSEEAYRAAVEIQ T0323 125 :IEKLTAIKGIGQWTAEMFM 2csbA 410 :LAELTKKEGVGRKTAERLL T0323 145 :FSLGR 2csbA 429 :RAFGN T0323 157 :DVGLQRGAKW 2csbA 434 :PERVKQLARE T0323 167 :LYGNG 2csbA 449 :LASVE T0323 172 :EGDGKKLLIYHGKAWAPYETV 2csbA 474 :RGIDRERAERLLKKYGGYSKV Number of specific fragments extracted= 12 number of extra gaps= 1 total=211 Number of alignments=19 # 2csbA read from 2csbA/merged-good-all-a2m # found chain 2csbA in template set Warning: unaligning (T0323)Q17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2csbA)R250 T0323 4 :FSTDSPEVKTIVA 2csbA 236 :IEYDERTAKRHVK T0323 18 :DSRLFQFIEIAG 2csbA 251 :DRLLEELYEHLE T0323 30 :EVQLPTKPNPFQSLVSSIVEQQL 2csbA 268 :YLRHPLTRRWIVEHKRDIMRRYL T0323 54 :IKAASAIYGRVEQLVGG 2csbA 291 :EQRIVECALKLQDRYGI T0323 71 :A 2csbA 375 :E T0323 74 :KPEQLYRVSDEAL 2csbA 376 :SIAGILATDLEEI T0323 87 :RQAGVSKRKIEYIRHVC 2csbA 393 :EEGRLSEEAYRAAVEIQ T0323 125 :IEKLTAIKGIGQWTAEMFM 2csbA 410 :LAELTKKEGVGRKTAERLL T0323 145 :FSLGR 2csbA 429 :RAFGN T0323 157 :DVGLQRGAKW 2csbA 434 :PERVKQLARE T0323 167 :LYGNG 2csbA 449 :LASVE T0323 172 :EGDGKKLLIYHGKAWAPYETV 2csbA 474 :RGIDRERAERLLKKYGGYSKV Number of specific fragments extracted= 12 number of extra gaps= 1 total=223 Number of alignments=20 # 2csbA read from 2csbA/merged-good-all-a2m # found chain 2csbA in template set Warning: unaligning (T0323)Q17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2csbA)R250 T0323 2 :RYFSTDSPEVKTIVA 2csbA 234 :VNIEYDERTAKRHVK T0323 18 :DSRLFQFIEIAG 2csbA 251 :DRLLEELYEHLE T0323 30 :EVQLPTKPNPFQSLVSSIVE 2csbA 268 :YLRHPLTRRWIVEHKRDIMR T0323 51 :QLSIKAASAIYGRVEQLVGGA 2csbA 288 :RYLEQRIVECALKLQDRYGIR T0323 74 :KPEQLYRVSDEALRQAGVSKRKIEYIRHV 2csbA 345 :EAKSVNRTLATLIDEHGLSPDAADELIEH T0323 104 :EHVES 2csbA 386 :EEIER T0323 109 :GRLDFTEL 2csbA 395 :GRLSEEAY T0323 118 :GAEATTVIEKLTAIKGIGQWTAEMFM 2csbA 403 :RAAVEIQLAELTKKEGVGRKTAERLL T0323 145 :FSLGRL 2csbA 429 :RAFGNP T0323 158 :VGLQRG 2csbA 435 :ERVKQL T0323 164 :AKWLYGNG 2csbA 446 :IEKLASVE T0323 172 :EGDGKKLLIYHGKAWAPYET 2csbA 474 :RGIDRERAERLLKKYGGYSK Number of specific fragments extracted= 12 number of extra gaps= 1 total=235 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ngnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ngnA expands to /projects/compbio/data/pdb/1ngn.pdb.gz 1ngnA:Skipped atom 495, because occupancy 0.500 <= existing 0.500 in 1ngnA Skipped atom 497, because occupancy 0.500 <= existing 0.500 in 1ngnA Skipped atom 499, because occupancy 0.500 <= existing 0.500 in 1ngnA Skipped atom 501, because occupancy 0.500 <= existing 0.500 in 1ngnA # T0323 read from 1ngnA/merged-good-all-a2m # 1ngnA read from 1ngnA/merged-good-all-a2m # adding 1ngnA to template set # found chain 1ngnA in template set Warning: unaligning (T0323)E30 because first residue in template chain is (1ngnA)K411 T0323 31 :VQLP 1ngnA 412 :WTPP T0323 37 :PNPFQSLVSSIVEQQLSIKAASAIYGRVEQL 1ngnA 428 :HDPWKLLIATIFLNRTSGKMAIPVLWEFLEK T0323 72 :LEKPEQLYRVSDEAL 1ngnA 459 :YPSAEVARAADWRDV T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLDFTE 1ngnA 478 :KPLGLYDLRAKTIIKFSDEYLTKQWRYPI T0323 130 :AIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWL 1ngnA 507 :ELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL T0323 184 :K 1ngnA 545 :W Number of specific fragments extracted= 6 number of extra gaps= 0 total=241 Number of alignments=22 # 1ngnA read from 1ngnA/merged-good-all-a2m # found chain 1ngnA in template set Warning: unaligning (T0323)E30 because first residue in template chain is (1ngnA)K411 T0323 31 :VQLPTKP 1ngnA 412 :WTPPRSP T0323 38 :NPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1ngnA 429 :DPWKLLIATIFLNRTSGKMAIPVLWEFLEKY T0323 73 :EKPEQLYRVSDEAL 1ngnA 460 :PSAEVARAADWRDV T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLDFTEL 1ngnA 478 :KPLGLYDLRAKTIIKFSDEYLTKQWRYPIE T0323 131 :IKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLY 1ngnA 508 :LHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLW Number of specific fragments extracted= 5 number of extra gaps= 0 total=246 Number of alignments=23 # 1ngnA read from 1ngnA/merged-good-all-a2m # found chain 1ngnA in template set Warning: unaligning (T0323)E30 because first residue in template chain is (1ngnA)K411 T0323 31 :VQLPTK 1ngnA 412 :WTPPRS T0323 37 :PNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1ngnA 428 :HDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYP T0323 74 :KPEQLYRVSDE 1ngnA 461 :SAEVARAADWR T0323 85 :ALRQAGVSKRKIEYIRHVCEHVESGRLDFT 1ngnA 476 :LLKPLGLYDLRAKTIIKFSDEYLTKQWRYP T0323 129 :TAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLY 1ngnA 506 :IELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLW Number of specific fragments extracted= 5 number of extra gaps= 0 total=251 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n3aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1n3aA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1n3aA/merged-good-all-a2m.gz for input Trying 1n3aA/merged-good-all-a2m Error: Couldn't open file 1n3aA/merged-good-all-a2m or 1n3aA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mpgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0323 read from 1mpgA/merged-good-all-a2m # 1mpgA read from 1mpgA/merged-good-all-a2m # found chain 1mpgA in training set T0323 7 :DSPEVKTIVAQDSRL 1mpgA 67 :LEPVAAECLAKMSRL T0323 22 :FQFIEIAGE 1mpgA 89 :QIVNGALGR T0323 31 :VQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1mpgA 105 :LRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYG T0323 70 :GALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDF 1mpgA 153 :ICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPM T0323 118 :GA 1mpgA 197 :TI T0323 120 :EATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQR 1mpgA 201 :DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQ T0323 166 :WL 1mpgA 244 :RF T0323 172 :EGDGKKLLIYHGKAWAPYETVACLYLWKAAGTFAE 1mpgA 246 :PGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPD Number of specific fragments extracted= 8 number of extra gaps= 0 total=259 Number of alignments=25 # 1mpgA read from 1mpgA/merged-good-all-a2m # found chain 1mpgA in training set T0323 14 :IVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG 1mpgA 88 :PQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGE T0323 71 :ALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELE 1mpgA 154 :CFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPG T0323 120 :EATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRG 1mpgA 201 :DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQR T0323 170 :NGEG 1mpgA 245 :FPGM T0323 175 :GKKLLIYHGKAWAPYETVACLYLWKAAGTFAE 1mpgA 249 :TPAQIRRYAERWKPWRSYALLHIWYTEGWQPD Number of specific fragments extracted= 5 number of extra gaps= 0 total=264 Number of alignments=26 # 1mpgA read from 1mpgA/merged-good-all-a2m # found chain 1mpgA in training set T0323 2 :RYFSTDSPEVK 1mpgA 82 :FDLQCNPQIVN T0323 19 :SRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1mpgA 93 :GALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGER T0323 72 :LEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLD 1mpgA 155 :FPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLP T0323 117 :EG 1mpgA 196 :MT T0323 119 :AEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGA 1mpgA 200 :GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF T0323 172 :EGDGKKLLIYHGKAWAPYETVACLYLW 1mpgA 246 :PGMTPAQIRRYAERWKPWRSYALLHIW Number of specific fragments extracted= 6 number of extra gaps= 0 total=270 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1weiA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1weiA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1weiA/merged-good-all-a2m.gz for input Trying 1weiA/merged-good-all-a2m Error: Couldn't open file 1weiA/merged-good-all-a2m or 1weiA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n3cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1n3cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1n3cA/merged-good-all-a2m.gz for input Trying 1n3cA/merged-good-all-a2m Error: Couldn't open file 1n3cA/merged-good-all-a2m or 1n3cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m3qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m3qA expands to /projects/compbio/data/pdb/1m3q.pdb.gz 1m3qA:# T0323 read from 1m3qA/merged-good-all-a2m # 1m3qA read from 1m3qA/merged-good-all-a2m # adding 1m3qA to template set # found chain 1m3qA in template set T0323 4 :FSTD 1m3qA 102 :LDVT T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1m3qA 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1m3qA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFG T0323 70 :GALEKPEQLYR 1m3qA 179 :HGFPSLQALAG T0323 83 :DEALRQAGVSK 1m3qA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1m3qA 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1m3qA 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1m3qA 268 :EVHMWHIAQRDYSWH T0323 172 :EGDGK 1m3qA 289 :KGPSP T0323 177 :KLLIYHGKA 1m3qA 297 :KELGNFFRS T0323 186 :WAPYETVACLYLW 1m3qA 307 :WGPYAGWAQAVLF Number of specific fragments extracted= 11 number of extra gaps= 0 total=281 Number of alignments=28 # 1m3qA read from 1m3qA/merged-good-all-a2m # found chain 1m3qA in template set T0323 9 :PEVKTIVAQDSRLFQFIEIAGEVQL 1m3qA 108 :QLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG 1m3qA 133 :LRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP T0323 71 :ALEKPEQLYR 1m3qA 180 :GFPSLQALAG T0323 83 :DEALRQAGVSK 1m3qA 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1m3qA 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1m3qA 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1m3qA 268 :EVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYHGKAWAP 1m3qA 292 :SPQTNKELGNFFRSLWG T0323 189 :YETVACLYLW 1m3qA 310 :YAGWAQAVLF Number of specific fragments extracted= 9 number of extra gaps= 0 total=290 Number of alignments=29 # 1m3qA read from 1m3qA/merged-good-all-a2m # found chain 1m3qA in template set T0323 2 :RYFSTDS 1m3qA 100 :FQLDVTL T0323 9 :PEVKTIVAQDSRLFQFIEIAGEVQLP 1m3qA 108 :QLYHHWGSVDSHFQEVAQKFQGVRLL T0323 36 :KPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1m3qA 134 :RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPR T0323 72 :LEKPEQLYR 1m3qA 181 :FPSLQALAG T0323 81 :VSDEALRQAGV 1m3qA 191 :EVEAHLRKLGL T0323 93 :KRKIEYIRHVCEHVESGRL 1m3qA 202 :GYRARYVSASARAILEEQG T0323 112 :DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1m3qA 224 :WLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1m3qA 268 :EVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYH 1m3qA 289 :KGPSPQTNKEL T0323 183 :GKAWAPYETVACLYLWKAA 1m3qA 304 :RSLWGPYAGWAQAVLFSAD Number of specific fragments extracted= 10 number of extra gaps= 0 total=300 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kg2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kg2A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kg2A/merged-good-all-a2m.gz for input Trying 1kg2A/merged-good-all-a2m Error: Couldn't open file 1kg2A/merged-good-all-a2m or 1kg2A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p59A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1p59A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1p59A/merged-good-all-a2m.gz for input Trying 1p59A/merged-good-all-a2m Error: Couldn't open file 1p59A/merged-good-all-a2m or 1p59A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lmzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lmzA expands to /projects/compbio/data/pdb/1lmz.pdb.gz 1lmzA:# T0323 read from 1lmzA/merged-good-all-a2m # 1lmzA read from 1lmzA/merged-good-all-a2m # adding 1lmzA to template set # found chain 1lmzA in template set T0323 2 :RYFSTDSP 1lmzA 2 :ERCGWVSQ T0323 18 :DSRLFQFIEIAGEVQL 1lmzA 10 :DPLYIAYHDNEWGVPE T0323 37 :PN 1lmzA 26 :TD T0323 39 :PFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1lmzA 31 :LFEMICLEGQQAGLSWITVLKKRENYRACFHQF T0323 74 :KPEQLYRVSDEAL 1lmzA 64 :DPVKVAAMQEEDV T0323 87 :RQAGV 1lmzA 81 :QDAGI T0323 92 :SKRKIEYIRHVCEHVES 1lmzA 88 :HRGKIQAIIGNARAYLQ T0323 118 :GAEA 1lmzA 134 :EIPT T0323 122 :TTVIEKLTA 1lmzA 143 :DALSKALKK T0323 131 :IKGIGQWTAEMFM 1lmzA 154 :FKFVGTTICYSFM T0323 145 :FSLGRLD 1lmzA 167 :QACGLVN Number of specific fragments extracted= 11 number of extra gaps= 0 total=311 Number of alignments=31 # 1lmzA read from 1lmzA/merged-good-all-a2m # found chain 1lmzA in template set T0323 2 :RYFSTDSP 1lmzA 2 :ERCGWVSQ T0323 18 :DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1lmzA 10 :DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQF T0323 74 :KPEQLYRVSDEAL 1lmzA 64 :DPVKVAAMQEEDV T0323 87 :RQAGV 1lmzA 81 :QDAGI T0323 92 :SKRKIEYIRHVCEHVES 1lmzA 88 :HRGKIQAIIGNARAYLQ T0323 109 :GRL 1lmzA 109 :GEP T0323 112 :DFTELEGAEA 1lmzA 128 :QATTLSEIPT T0323 122 :TTVIEKLTA 1lmzA 143 :DALSKALKK T0323 131 :IKGIGQWTAEMFM 1lmzA 154 :FKFVGTTICYSFM T0323 145 :FSLGRLDV 1lmzA 167 :QACGLVND Number of specific fragments extracted= 10 number of extra gaps= 0 total=321 Number of alignments=32 # 1lmzA read from 1lmzA/merged-good-all-a2m # found chain 1lmzA in template set T0323 18 :DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA 1lmzA 10 :DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQF T0323 74 :KPEQLYRVSDEALRQA 1lmzA 64 :DPVKVAAMQEEDVERL T0323 91 :VSKRKIEYIRHVCEHVES 1lmzA 87 :RHRGKIQAIIGNARAYLQ T0323 139 :AEMFMMFSLGRLDVLSV 1lmzA 113 :ADFVWSFVNHQPQMTQA T0323 169 :GNGEGDGKKLLIYHGKAWAPY 1lmzA 132 :LSEIPTSTPASDALSKALKKR T0323 190 :ETVACLYLWKAAG 1lmzA 158 :GTTICYSFMQACG Number of specific fragments extracted= 6 number of extra gaps= 0 total=327 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kqjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kqjA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kqjA/merged-good-all-a2m.gz for input Trying 1kqjA/merged-good-all-a2m Error: Couldn't open file 1kqjA/merged-good-all-a2m or 1kqjA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mun/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0323 read from 1mun/merged-good-all-a2m # 1mun read from 1mun/merged-good-all-a2m # found chain 1mun in training set T0323 15 :VAQDSRLFQFIEIAG 1mun 5 :QFSAQVLDWYDKYGR T0323 30 :EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQL 1mun 21 :TLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMAR T0323 72 :LEKPEQLYRVSDEAL 1mun 59 :FPTVTDLANAPLDEV T0323 87 :RQAGV 1mun 76 :LWTGL T0323 92 :SKRKIEYIRHVCEHVESGRLD 1mun 82 :YYARARNLHKAAQQVATLHGG T0323 118 :GAEAT 1mun 103 :KFPET T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1mun 108 :FEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNGEGDG 1mun 134 :FPILNGNVKRVLARCYAVSGWPG T0323 176 :KKLLIYHGKAWAPYETVACLYLW 1mun 161 :ENKLWSLSEQVTPAVGVERFNQA T0323 199 :KAAGT 1mun 191 :ICTRS T0323 208 :YRSLEELLHHGN 1mun 196 :KPKCSLCPLQNG Number of specific fragments extracted= 11 number of extra gaps= 0 total=338 Number of alignments=34 # 1mun read from 1mun/merged-good-all-a2m # found chain 1mun in training set T0323 14 :IVAQDSRLFQFIEIAG 1mun 4 :SQFSAQVLDWYDKYGR T0323 30 :EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1mun 21 :TLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARF T0323 73 :EKPEQLYRVSDEAL 1mun 60 :PTVTDLANAPLDEV T0323 87 :RQAGV 1mun 76 :LWTGL T0323 92 :SKRKIEYIRHVCEHVES 1mun 82 :YYARARNLHKAAQQVAT T0323 114 :TELEGAEAT 1mun 99 :LHGGKFPET T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1mun 108 :FEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 1mun 134 :FPILNGNVKRVLARCYAVSGWPGKKEVENKLWSLSE T0323 189 :YETVACLYLW 1mun 177 :VERFNQAMMD T0323 199 :K 1mun 192 :C T0323 200 :AAGTFAEEYRSLEELLH 1mun 194 :RSKPKCSLCPLQNGCIA Number of specific fragments extracted= 11 number of extra gaps= 0 total=349 Number of alignments=35 # 1mun read from 1mun/merged-good-all-a2m # found chain 1mun in training set T0323 16 :AQDSRLFQFIEIAGEVQLP 1mun 5 :QFSAQVLDWYDKYGRKTLP T0323 35 :TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1mun 26 :IDKTPYKVWLSEVMLQQTQVATVIPYFERFMARF T0323 73 :EKPEQLYRVSDE 1mun 60 :PTVTDLANAPLD T0323 85 :ALRQAGV 1mun 76 :LWTGLGY T0323 93 :KRKIEYIRHVCEHVES 1mun 83 :YARARNLHKAAQQVAT T0323 109 :GRL 1mun 102 :GKF T0323 122 :TTVIEKLTAIKGIGQWTAEMFMMFSLGRL 1mun 105 :PETFEEVAALPGVGRSTAGAILSLSLGKH T0323 153 :LSVGDVGLQRGAKWLYGNG 1mun 134 :FPILNGNVKRVLARCYAVS T0323 172 :EGDGKKLLIYHGKAWAP 1mun 157 :KKEVENKLWSLSEQVTP T0323 189 :YETVACLYLWKAAG 1mun 176 :GVERFNQAMMDLGA T0323 207 :EYRSLEELLHHGNQ 1mun 190 :MICTRSKPKCSLCP Number of specific fragments extracted= 11 number of extra gaps= 0 total=360 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ko9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ko9A expands to /projects/compbio/data/pdb/1ko9.pdb.gz 1ko9A:# T0323 read from 1ko9A/merged-good-all-a2m # 1ko9A read from 1ko9A/merged-good-all-a2m # adding 1ko9A to template set # found chain 1ko9A in template set Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE in next template residue (1ko9A)N149 Warning: unaligning (T0323)Q51 because of BadResidue code BAD_PEPTIDE at template residue (1ko9A)N149 T0323 4 :FSTD 1ko9A 102 :LDVT T0323 8 :SPEVKTIVAQDSRLFQFIEIAGEVQL 1ko9A 107 :AQLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVE 1ko9A 133 :LRQDPIECLFSFICS T0323 52 :LSIKAASAIYGRVEQLVG 1ko9A 150 :NNIARITGMVERLCQAFG T0323 70 :GALEKPEQLYR 1ko9A 179 :HGFPSLQALAG T0323 83 :DEALRQAGVSK 1ko9A 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1ko9A 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ko9A 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ko9A 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGK 1ko9A 289 :KGPSP T0323 177 :KLLIYHGKA 1ko9A 297 :KELGNFFRS T0323 186 :WAPYETVACLYLW 1ko9A 307 :WGPYAGWAQAVLF Number of specific fragments extracted= 12 number of extra gaps= 1 total=372 Number of alignments=37 # 1ko9A read from 1ko9A/merged-good-all-a2m # found chain 1ko9A in template set Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE in next template residue (1ko9A)N149 Warning: unaligning (T0323)Q51 because of BadResidue code BAD_PEPTIDE at template residue (1ko9A)N149 T0323 9 :PEVKTIVAQDSRLFQFIEIAGEVQL 1ko9A 108 :QLYHHWGSVDSHFQEVAQKFQGVRL T0323 35 :TKPNPFQSLVSSIVE 1ko9A 133 :LRQDPIECLFSFICS T0323 52 :LSIKAASAIYGRVEQLVGG 1ko9A 150 :NNIARITGMVERLCQAFGP T0323 71 :ALEKPEQLYR 1ko9A 180 :GFPSLQALAG T0323 83 :DEALRQAGVSK 1ko9A 193 :EAHLRKLGLGY T0323 95 :KIEYIRHVCEHVESGRLD 1ko9A 204 :RARYVSASARAILEEQGG T0323 113 :FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ko9A 225 :LQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ko9A 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYHGKAWAP 1ko9A 292 :SPQTNKELGNFFRSLWG T0323 189 :YETVACLYLW 1ko9A 310 :YAGWAQAVLF Number of specific fragments extracted= 10 number of extra gaps= 1 total=382 Number of alignments=38 # 1ko9A read from 1ko9A/merged-good-all-a2m # found chain 1ko9A in template set Warning: unaligning (T0323)Q50 because of BadResidue code BAD_PEPTIDE in next template residue (1ko9A)N149 Warning: unaligning (T0323)Q51 because of BadResidue code BAD_PEPTIDE at template residue (1ko9A)N149 Warning: unaligning (T0323)G202 because last residue in template chain is (1ko9A)L323 T0323 2 :RYFSTDS 1ko9A 100 :FQLDVTL T0323 9 :PEVKTIVAQDSRLFQFIEIAGEVQLP 1ko9A 108 :QLYHHWGSVDSHFQEVAQKFQGVRLL T0323 36 :KPNPFQSLVSSIVE 1ko9A 134 :RQDPIECLFSFICS T0323 52 :LSIKAASAIYGRVEQLVGGA 1ko9A 150 :NNIARITGMVERLCQAFGPR T0323 72 :LEKPEQLYR 1ko9A 181 :FPSLQALAG T0323 81 :VSDEALRQAGV 1ko9A 191 :EVEAHLRKLGL T0323 93 :KRKIEYIRHVCEHVESGRL 1ko9A 202 :GYRARYVSASARAILEEQG T0323 112 :DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 1ko9A 224 :WLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPV T0323 157 :DVGLQRGAKWLYGNG 1ko9A 268 :DVHMWHIAQRDYSWH T0323 172 :EGDGKKLLIYH 1ko9A 289 :KGPSPQTNKEL T0323 183 :GKAWAPYETVACLYLWKAA 1ko9A 304 :RSLWGPYAGWAQAVLFSAD Number of specific fragments extracted= 11 number of extra gaps= 1 total=393 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kg4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kg4A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kg4A/merged-good-all-a2m.gz for input Trying 1kg4A/merged-good-all-a2m Error: Couldn't open file 1kg4A/merged-good-all-a2m or 1kg4A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yqkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1yqkA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1yqkA/merged-good-all-a2m.gz for input Trying 1yqkA/merged-good-all-a2m Error: Couldn't open file 1yqkA/merged-good-all-a2m or 1yqkA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rrqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1rrqA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1rrqA/merged-good-all-a2m.gz for input Trying 1rrqA/merged-good-all-a2m Error: Couldn't open file 1rrqA/merged-good-all-a2m or 1rrqA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kg5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kg5A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kg5A/merged-good-all-a2m.gz for input Trying 1kg5A/merged-good-all-a2m Error: Couldn't open file 1kg5A/merged-good-all-a2m or 1kg5A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kg6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kg6A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kg6A/merged-good-all-a2m.gz for input Trying 1kg6A/merged-good-all-a2m Error: Couldn't open file 1kg6A/merged-good-all-a2m or 1kg6A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rrsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1rrsA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1rrsA/merged-good-all-a2m.gz for input Trying 1rrsA/merged-good-all-a2m Error: Couldn't open file 1rrsA/merged-good-all-a2m or 1rrsA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kg7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323/1kg7A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0323/1kg7A/merged-good-all-a2m.gz for input Trying 1kg7A/merged-good-all-a2m Error: Couldn't open file 1kg7A/merged-good-all-a2m or 1kg7A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1keaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1keaA expands to /projects/compbio/data/pdb/1kea.pdb.gz 1keaA:Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 326, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 854, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 856, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1482, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1484, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1486, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1490, because occupancy 0.500 <= existing 0.500 in 1keaA Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 1keaA # T0323 read from 1keaA/merged-good-all-a2m # 1keaA read from 1keaA/merged-good-all-a2m # adding 1keaA to template set # found chain 1keaA in template set Warning: unaligning (T0323)S8 because first residue in template chain is (1keaA)D3 T0323 9 :PEVKTIVAQDSRLFQFIEIAG 1keaA 4 :ATNKKRKVFVSTILTFWNTDR T0323 30 :EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQL 1keaA 26 :DFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVK T0323 72 :LEKPEQLYRVSDEAL 1keaA 64 :YKCFEDILKTPKSEI T0323 87 :RQAGVSKRKIEYIRHVCEHVESGRLD 1keaA 83 :KEIGLSNQRAEQLKELARVVINDYGG T0323 118 :GAEAT 1keaA 109 :RVPRN T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1keaA 114 :RKAILDLPGVGKYTCAAVMCLAFGKK T0323 152 :VLSV 1keaA 140 :AAMV T0323 157 :DVGLQRGAKWLYGNG 1keaA 144 :DANFVRVINRYFGGS T0323 172 :EGDGKKLLIYHGKAWAPYETVACLYLW 1keaA 162 :LNYNHKALWELAETLVPGGKCRDFNLG T0323 199 :KAAGTF 1keaA 196 :ICAPRK T0323 209 :RSLEELLHHGN 1keaA 202 :PKCEKCGMSKL Number of specific fragments extracted= 11 number of extra gaps= 0 total=404 Number of alignments=40 # 1keaA read from 1keaA/merged-good-all-a2m # found chain 1keaA in template set Warning: unaligning (T0323)S8 because first residue in template chain is (1keaA)D3 Warning: unaligning (T0323)Q220 because last residue in template chain is (1keaA)C219 T0323 9 :PEVKTIVAQDSRLFQFIEIAG 1keaA 4 :ATNKKRKVFVSTILTFWNTDR T0323 30 :EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLV 1keaA 26 :DFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKY T0323 73 :EKPEQLYRVSDEAL 1keaA 65 :KCFEDILKTPKSEI T0323 87 :RQAGVSKRKIEYIRHVCEHVES 1keaA 83 :KEIGLSNQRAEQLKELARVVIN T0323 114 :TELEGAEAT 1keaA 105 :DYGGRVPRN T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1keaA 114 :RKAILDLPGVGKYTCAAVMCLAFGKK T0323 152 :VLSV 1keaA 140 :AAMV T0323 157 :DVGLQRGAKWLYG 1keaA 144 :DANFVRVINRYFG T0323 170 :NGEGDGKKLLIYHGKAWAP 1keaA 160 :ENLNYNHKALWELAETLVP T0323 189 :YETVACLYLW 1keaA 182 :CRDFNLGLMD T0323 199 :K 1keaA 197 :C T0323 200 :AAGTFAEEYRSLEELLHHGN 1keaA 199 :PRKPKCEKCGMSKLCSYYEK Number of specific fragments extracted= 12 number of extra gaps= 0 total=416 Number of alignments=41 # 1keaA read from 1keaA/merged-good-all-a2m # found chain 1keaA in template set Warning: unaligning (T0323)S8 because first residue in template chain is (1keaA)D3 T0323 9 :PEVKTIVAQDSRLFQFIEI 1keaA 4 :ATNKKRKVFVSTILTFWNT T0323 28 :AGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVG 1keaA 24 :RRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYK T0323 74 :KPEQLYRVSDE 1keaA 66 :CFEDILKTPKS T0323 85 :ALRQAGVSKRKIEYIRHVCEHVES 1keaA 81 :DIKEIGLSNQRAEQLKELARVVIN T0323 109 :GRLD 1keaA 108 :GRVP T0323 119 :AE 1keaA 112 :RN T0323 125 :IEKLTAIKGIGQWTAEMFMMFSLGRL 1keaA 114 :RKAILDLPGVGKYTCAAVMCLAFGKK T0323 153 :LSVGDVGLQRGAKWLYGNG 1keaA 140 :AAMVDANFVRVINRYFGGS T0323 172 :EGDGKKLLIYHGKAWAPYETVACLYLWKAAG 1keaA 163 :NYNHKALWELAETLVPGGKCRDFNLGLMDFS T0323 206 :EEYRSLEELLHHGNQ 1keaA 194 :AIICAPRKPKCEKCG Number of specific fragments extracted= 10 number of extra gaps= 0 total=426 Number of alignments=42 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0323//projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0323/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)I96.CB) [> 2.6603 = 4.4339 < 5.7640] w=1.0000 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)C103.CB) [> 2.5670 = 4.2784 < 5.5619] w=0.9804 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)C103.CB) [> 2.4761 = 4.1268 < 5.3649] w=0.9545 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)I99.CB) [> 3.6618 = 6.1029 < 7.9338] w=0.9545 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)R100.CB) [> 3.2074 = 5.3458 < 6.9495] w=0.9467 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)F142.CB) [> 3.2669 = 5.4448 < 7.0783] w=0.9412 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)Y61.CB) [> 3.4371 = 5.7286 < 7.4471] w=0.9412 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)I99.CB) [> 3.6400 = 6.0666 < 7.8867] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)A57.CB) [> 3.1227 = 5.2044 < 6.7658] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)I60.CB) [> 3.5736 = 5.9560 < 7.7428] w=0.9412 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)K95.CB) [> 3.9602 = 6.6003 < 8.5804] w=0.9412 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)E107.CB) [> 3.2529 = 5.4216 < 7.0481] w=0.9412 to align # Constraint # added constraint: constraint((T0323)T129.CB, (T0323)A139.CB) [> 2.9111 = 4.8518 < 6.3074] w=0.9404 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)F142.CB) [> 3.4308 = 5.7180 < 7.4334] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)S146.CB) [> 2.6215 = 4.3691 < 5.6798] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)T138.CB) [> 2.9288 = 4.8814 < 6.3458] w=0.9386 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)M141.CB) [> 2.9757 = 4.9596 < 6.4474] w=0.9386 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)I134.CB) [> 3.9717 = 6.6196 < 8.6054] w=0.9386 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)T138.CB) [> 3.8912 = 6.4853 < 8.4309] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)K132.CB) [> 3.3525 = 5.5875 < 7.2638] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)G133.CA) [> 2.6464 = 4.4107 < 5.7340] w=0.9386 to align # Constraint # added constraint: constraint((T0323)H101.CB, (T0323)K132.CB) [> 3.4366 = 5.7277 < 7.4460] w=0.9386 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)I131.CB) [> 2.9416 = 4.9027 < 6.3735] w=0.9386 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)I131.CB) [> 3.6204 = 6.0340 < 7.8442] w=0.9386 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)R100.CB) [> 4.0248 = 6.7080 < 8.7205] w=0.9348 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)S146.CB) [> 2.8758 = 4.7930 < 6.2309] w=0.9334 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)P75.CB) [> 3.5258 = 5.8763 < 7.6392] w=0.9334 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)F145.CB) [> 3.2480 = 5.4133 < 7.0372] w=0.9334 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)I134.CB) [> 4.2495 = 7.0824 < 9.2071] w=0.9334 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)D157.CB) [> 3.4203 = 5.7006 < 7.4107] w=0.9334 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)L153.CB) [> 3.4244 = 5.7073 < 7.4195] w=0.9334 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)S154.CB) [> 3.0330 = 5.0549 < 6.5714] w=0.9334 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)A139.CB) [> 2.4876 = 4.1461 < 5.3899] w=0.9196 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)E97.CB) [> 3.5429 = 5.9047 < 7.6762] w=0.9152 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)E104.CB) [> 3.0273 = 5.0455 < 6.5591] w=0.9152 to align # Constraint # added constraint: constraint((T0323)E76.CB, (T0323)E107.CB) [> 3.9314 = 6.5523 < 8.5180] w=0.9152 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)C103.CB) [> 2.8728 = 4.7880 < 6.2244] w=0.9152 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)M143.CB) [> 4.2500 = 7.0834 < 9.2084] w=0.9144 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)F142.CB) [> 3.5558 = 5.9263 < 7.7042] w=0.9144 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)V106.CB) [> 3.2009 = 5.3348 < 6.9353] w=0.9075 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)A57.CB) [> 4.0028 = 6.6714 < 8.6728] w=0.8634 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)F142.CB) [> 3.5508 = 5.9180 < 7.6934] w=0.8608 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)G133.CA) [> 3.7081 = 6.1802 < 8.0343] w=0.8608 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)V155.CB) [> 3.7060 = 6.1767 < 8.0297] w=0.8556 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)Y61.CB) [> 3.6224 = 6.0374 < 7.8486] w=0.8556 to align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)I99.CB) [> 3.7358 = 6.2263 < 8.0942] w=0.8430 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)A139.CB) [> 3.0919 = 5.1532 < 6.6991] w=0.8418 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)M143.CB) [> 3.5038 = 5.8398 < 7.5917] w=0.8367 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)S154.CB) [> 4.1231 = 6.8718 < 8.9334] w=0.8297 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)V155.CB) [> 3.7316 = 6.2193 < 8.0851] w=0.8037 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)V102.CB) [> 3.9624 = 6.6041 < 8.5853] w=0.7856 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)L147.CB) [> 4.1589 = 6.9314 < 9.0108] w=0.7830 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)I131.CB) [> 4.6160 = 7.6934 < 10.0014] w=0.7830 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)F142.CB) [> 4.0447 = 6.7412 < 8.7636] w=0.7804 to align # Constraint # added constraint: constraint((T0323)D83.CB, (T0323)I96.CB) [> 2.9178 = 4.8630 < 6.3219] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)G133.CA) [> 3.8753 = 6.4588 < 8.3965] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V102.CB, (T0323)K132.CB) [> 3.6425 = 6.0709 < 7.8921] w=0.7778 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)I134.CB) [> 4.5279 = 7.5465 < 9.8104] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)I134.CB) [> 4.2654 = 7.1090 < 9.2416] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)V102.CB) [> 4.2963 = 7.1605 < 9.3086] w=0.7778 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)K74.CB) [> 4.3389 = 7.2314 < 9.4009] w=0.7778 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V64.CB) [> 4.2314 = 7.0524 < 9.1681] w=0.7778 to align # Constraint # added constraint: constraint((T0323)L128.CB, (T0323)T138.CB) [> 4.5516 = 7.5859 < 9.8617] w=0.7589 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)A89.CB) [> 3.7090 = 6.1816 < 8.0361] w=0.7519 to align # Constraint # added constraint: constraint((T0323)N38.CB, (T0323)S146.CB) [> 3.9561 = 6.5935 < 8.5716] w=0.7519 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)L153.CB) [> 3.7037 = 6.1728 < 8.0247] w=0.7519 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)L128.CB) [> 4.6351 = 7.7251 < 10.0427] w=0.7052 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)S146.CB) [> 4.0767 = 6.7945 < 8.8329] w=0.7001 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)V64.CB) [> 4.3441 = 7.2401 < 9.4121] w=0.7000 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)I131.CB) [> 4.2729 = 7.1214 < 9.2579] w=0.7000 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)M141.CB) [> 4.1835 = 6.9724 < 9.0642] w=0.7000 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)L78.CB) [> 3.2870 = 5.4783 < 7.1218] w=0.6756 to align # Constraint # added constraint: constraint((T0323)M143.CB, (T0323)V152.CB) [> 2.8463 = 4.7438 < 6.1669] w=0.6741 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)Q77.CB) [> 2.6510 = 4.4183 < 5.7438] w=0.6678 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)L179.CB) [> 3.0704 = 5.1173 < 6.6525] w=0.6482 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)F145.CB) [> 3.5522 = 5.9203 < 7.6964] w=0.6482 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)Y189.CB) [> 2.9690 = 4.9483 < 6.4328] w=0.6482 to align # Constraint # added constraint: constraint((T0323)A121.CB, (T0323)M143.CB) [> 3.6807 = 6.1345 < 7.9748] w=0.6482 to align # Constraint # added constraint: constraint((T0323)N170.CB, (T0323)H182.CB) [> 3.8208 = 6.3681 < 8.2785] w=0.6482 to align # Constraint # added constraint: constraint((T0323)Y79.CB, (T0323)V106.CB) [> 4.5145 = 7.5241 < 9.7813] w=0.6300 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)T138.CB) [> 3.8246 = 6.3743 < 8.2866] w=0.6275 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)G183.CA) [> 3.5498 = 5.9163 < 7.6912] w=0.6223 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)L179.CB) [> 3.8286 = 6.3810 < 8.2953] w=0.6223 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)W186.CB) [> 3.7212 = 6.2019 < 8.0625] w=0.6223 to align # Constraint # added constraint: constraint((T0323)K95.CB, (T0323)G133.CA) [> 4.3635 = 7.2724 < 9.4542] w=0.6222 to align # Constraint # added constraint: constraint((T0323)Y98.CB, (T0323)I134.CB) [> 4.4563 = 7.4271 < 9.6552] w=0.6222 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)Y61.CB) [> 4.2388 = 7.0647 < 9.1841] w=0.6222 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)L78.CB) [> 4.1936 = 6.9892 < 9.0860] w=0.5963 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)L86.CB) [> 4.1223 = 6.8706 < 8.9318] w=0.5963 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)S154.CB) [> 3.1931 = 5.3218 < 6.9184] w=0.5963 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)V152.CB) [> 2.7579 = 4.5965 < 5.9755] w=0.5963 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)S154.CB) [> 2.9584 = 4.9307 < 6.4099] w=0.5963 to align # Constraint # added constraint: constraint((T0323)P37.CB, (T0323)S146.CB) [> 2.9994 = 4.9989 < 6.4986] w=0.5963 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L179.CB) [> 3.4786 = 5.7976 < 7.5369] w=0.5900 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)E190.CB) [> 4.1700 = 6.9500 < 9.0349] w=0.5704 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)A85.CB) [> 3.9024 = 6.5040 < 8.4551] w=0.5704 to align # Constraint # added constraint: constraint((T0323)L86.CB, (T0323)K95.CB) [> 4.4373 = 7.3954 < 9.6140] w=0.5704 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)Q88.CB) [> 3.6010 = 6.0016 < 7.8021] w=0.5445 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)K132.CB) [> 4.2867 = 7.1446 < 9.2879] w=0.5445 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)V192.CB) [> 3.4824 = 5.8039 < 7.5451] w=0.5185 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)L195.CB) [> 3.4103 = 5.6838 < 7.3890] w=0.5185 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)C194.CB) [> 3.9192 = 6.5320 < 8.4916] w=0.5185 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)Y196.CB) [> 4.0825 = 6.8042 < 8.8454] w=0.5185 to align # Constraint # added constraint: constraint((T0323)D18.CB, (T0323)W186.CB) [> 3.6662 = 6.1103 < 7.9434] w=0.5185 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)L179.CB) [> 4.0585 = 6.7642 < 8.7934] w=0.5185 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)V91.CB) [> 3.4419 = 5.7366 < 7.4575] w=0.4978 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)L167.CB) [> 3.4551 = 5.7585 < 7.4861] w=0.4926 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)L197.CB) [> 3.7263 = 6.2105 < 8.0736] w=0.4926 to align # Constraint # added constraint: constraint((T0323)N170.CB, (T0323)L179.CB) [> 3.7948 = 6.3247 < 8.2221] w=0.4926 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V102.CB) [> 4.3428 = 7.2380 < 9.4095] w=0.4745 to align # Constraint # added constraint: constraint((T0323)E49.CB, (T0323)T138.CB) [> 4.4042 = 7.3404 < 9.5425] w=0.4719 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)V155.CB) [> 4.5227 = 7.5378 < 9.7992] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)Y196.CB) [> 2.8850 = 4.8083 < 6.2508] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)T191.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)T191.CB) [> 3.1648 = 5.2747 < 6.8571] w=0.4667 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)K176.CB) [> 3.9488 = 6.5812 < 8.5556] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)I99.CB) [> 4.4647 = 7.4412 < 9.6735] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)C103.CB) [> 4.6553 = 7.7589 < 10.0865] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)L150.CB) [> 4.4375 = 7.3958 < 9.6145] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)C194.CB) [> 3.2905 = 5.4841 < 7.1293] w=0.4667 to align # Constraint # added constraint: constraint((T0323)I25.CB, (T0323)Y196.CB) [> 3.5688 = 5.9479 < 7.7323] w=0.4667 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)C194.CB) [> 4.2618 = 7.1030 < 9.2339] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)W198.CB) [> 4.0355 = 6.7258 < 8.7435] w=0.4667 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)L197.CB) [> 4.0750 = 6.7917 < 8.8292] w=0.4667 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)S146.CB) [> 4.4902 = 7.4836 < 9.7287] w=0.4667 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)M143.CB) [> 3.5553 = 5.9254 < 7.7031] w=0.4656 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)G90.CA) [> 4.1380 = 6.8967 < 8.9658] w=0.4459 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)F113.CB) [> 4.0491 = 6.7485 < 8.7731] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A121.CB, (T0323)V152.CB) [> 3.8244 = 6.3740 < 8.2863] w=0.4408 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)E190.CB) [> 4.4209 = 7.3682 < 9.5786] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)Y196.CB) [> 3.6786 = 6.1309 < 7.9702] w=0.4408 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)L72.CB) [> 2.7372 = 4.5621 < 5.9307] w=0.4408 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)L72.CB) [> 4.5364 = 7.5607 < 9.8289] w=0.4408 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)A89.CB) [> 3.0760 = 5.1266 < 6.6646] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)A89.CB) [> 3.3923 = 5.6538 < 7.3499] w=0.4408 to align # Constraint # added constraint: constraint((T0323)A57.CB, (T0323)A89.CB) [> 3.7778 = 6.2963 < 8.1852] w=0.4408 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)A193.CB) [> 3.8038 = 6.3397 < 8.2416] w=0.4408 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)L197.CB) [> 4.1840 = 6.9734 < 9.0654] w=0.4408 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)Y189.CB) [> 4.0481 = 6.7469 < 8.7709] w=0.4148 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)E190.CB) [> 3.0090 = 5.0149 < 6.5194] w=0.4148 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)V152.CB) [> 4.6598 = 7.7663 < 10.0962] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)L195.CB) [> 3.4805 = 5.8008 < 7.5410] w=0.4148 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)E73.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)C194.CB) [> 4.1272 = 6.8787 < 8.9423] w=0.4148 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)K184.CB) [> 3.5650 = 5.9417 < 7.7243] w=0.4148 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)W198.CB) [> 4.0691 = 6.7819 < 8.8165] w=0.4148 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)G156.CA) [> 3.3017 = 5.5028 < 7.1536] w=0.4148 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)G90.CA) [> 4.3856 = 7.3093 < 9.5021] w=0.3941 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)G133.CA) [> 4.3648 = 7.2746 < 9.4570] w=0.3941 to align # Constraint # added constraint: constraint((T0323)L43.CB, (T0323)T138.CB) [> 4.1943 = 6.9904 < 9.0875] w=0.3941 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)T114.CB) [> 3.7756 = 6.2926 < 8.1804] w=0.3889 to align # Constraint # added constraint: constraint((T0323)A59.CB, (T0323)Q88.CB) [> 3.8693 = 6.4489 < 8.3835] w=0.3889 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)L147.CB) [> 3.2001 = 5.3334 < 6.9335] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V64.CB, (T0323)A89.CB) [> 4.0703 = 6.7838 < 8.8189] w=0.3889 to align # Constraint # added constraint: constraint((T0323)R87.CB, (T0323)I96.CB) [> 2.7155 = 4.5258 < 5.8835] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)L147.CB) [> 3.3866 = 5.6443 < 7.3376] w=0.3889 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)T191.CB) [> 3.5586 = 5.9310 < 7.7102] w=0.3889 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)T191.CB) [> 2.8317 = 4.7196 < 6.1354] w=0.3889 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)V91.CB) [> 4.2305 = 7.0509 < 9.1662] w=0.3889 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)E65.CB) [> 3.8544 = 6.4240 < 8.3512] w=0.3889 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)G90.CA) [> 4.3790 = 7.2984 < 9.4879] w=0.3630 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)V91.CB) [> 3.4020 = 5.6701 < 7.3711] w=0.3630 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)A119.CB) [> 3.9552 = 6.5920 < 8.5696] w=0.3630 to align # Constraint # added constraint: constraint((T0323)E117.CB, (T0323)G148.CA) [> 3.9101 = 6.5168 < 8.4719] w=0.3371 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)I25.CB) [> 3.2077 = 5.3462 < 6.9501] w=0.3371 to align # Constraint # added constraint: constraint((T0323)Q32.CB, (T0323)L195.CB) [> 4.4215 = 7.3692 < 9.5800] w=0.3371 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)T191.CB) [> 4.5234 = 7.5389 < 9.8006] w=0.3371 to align # Constraint # added constraint: constraint((T0323)P39.CB, (T0323)F113.CB) [> 2.7170 = 4.5283 < 5.8868] w=0.3371 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)I180.CB) [> 4.3926 = 7.3210 < 9.5173] w=0.3371 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)V81.CB) [> 4.1073 = 6.8455 < 8.8992] w=0.3370 to align # Constraint # added constraint: constraint((T0323)M143.CB, (T0323)L153.CB) [> 3.1475 = 5.2458 < 6.8196] w=0.3370 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)R149.CB) [> 3.7843 = 6.3072 < 8.1994] w=0.3307 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)V91.CB) [> 4.5623 = 7.6038 < 9.8850] w=0.3163 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)A139.CB) [> 4.7016 = 7.8361 < 10.1869] w=0.3163 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)G135.CA) [> 4.4735 = 7.4558 < 9.6926] w=0.3163 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)Y196.CB) [> 4.6749 = 7.7916 < 10.1290] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)A193.CB) [> 2.8728 = 4.7880 < 6.2244] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)Y196.CB) [> 4.6111 = 7.6851 < 9.9907] w=0.3111 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)Y168.CB) [> 4.0872 = 6.8120 < 8.8556] w=0.3111 to align # Constraint # added constraint: constraint((T0323)Q32.CB, (T0323)V192.CB) [> 4.4122 = 7.3536 < 9.5597] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L197.CB) [> 4.5781 = 7.6302 < 9.9193] w=0.3111 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)W186.CB) [> 3.4416 = 5.7360 < 7.4569] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)A187.CB) [> 4.2803 = 7.1338 < 9.2739] w=0.3111 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)D157.CB) [> 4.6341 = 7.7235 < 10.0406] w=0.3111 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)E65.CB) [> 4.4226 = 7.3709 < 9.5822] w=0.3111 to align # Constraint # added constraint: constraint((T0323)E140.CB, (T0323)G156.CA) [> 4.4477 = 7.4129 < 9.6367] w=0.3111 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)K127.CB) [> 3.5527 = 5.9211 < 7.6975] w=0.2852 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)L128.CB) [> 4.3513 = 7.2522 < 9.4278] w=0.2852 to align # Constraint # added constraint: constraint((T0323)G183.CA, (T0323)A193.CB) [> 4.5512 = 7.5854 < 9.8610] w=0.2852 to align # Constraint # added constraint: constraint((T0323)R110.CB, (T0323)K127.CB) [> 4.4940 = 7.4900 < 9.7369] w=0.2852 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)V192.CB) [> 4.1087 = 6.8478 < 8.9022] w=0.2852 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)G118.CA) [> 3.4295 = 5.7158 < 7.4306] w=0.2852 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)W198.CB) [> 3.5538 = 5.9229 < 7.6998] w=0.2852 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L179.CB) [> 4.0956 = 6.8261 < 8.8739] w=0.2852 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)L195.CB) [> 3.8009 = 6.3348 < 8.2352] w=0.2593 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)A119.CB) [> 3.1991 = 5.3319 < 6.9315] w=0.2593 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)L214.CB) [> 4.0356 = 6.7259 < 8.7437] w=0.2593 to align # Constraint # added constraint: constraint((T0323)L33.CB, (T0323)S45.CB) [> 2.9903 = 4.9838 < 6.4789] w=0.2593 to align # Constraint # added constraint: constraint((T0323)V106.CB, (T0323)E120.CB) [> 4.2234 = 7.0390 < 9.1507] w=0.2529 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)Y61.CB) [> 4.2270 = 7.0451 < 9.1586] w=0.2411 to align # Constraint # added constraint: constraint((T0323)G183.CA, (T0323)C194.CB) [> 4.5511 = 7.5851 < 9.8607] w=0.2359 to align # Constraint # added constraint: constraint((T0323)V124.CB, (T0323)F142.CB) [> 4.7601 = 7.9336 < 10.3137] w=0.2334 to align # Constraint # added constraint: constraint((T0323)I14.CB, (T0323)Y189.CB) [> 4.7464 = 7.9107 < 10.2839] w=0.2334 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)M143.CB) [> 4.7757 = 7.9595 < 10.3473] w=0.2334 to align # Constraint # added constraint: constraint((T0323)I60.CB, (T0323)K95.CB) [> 4.5540 = 7.5899 < 9.8669] w=0.2334 to align # Constraint # added constraint: constraint((T0323)A119.CB, (T0323)F142.CB) [> 4.2836 = 7.1393 < 9.2811] w=0.2334 to align # Constraint # added constraint: constraint((T0323)M144.CB, (T0323)L195.CB) [> 4.2887 = 7.1478 < 9.2921] w=0.2334 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)A187.CB) [> 4.2506 = 7.0844 < 9.2097] w=0.2333 to align # Constraint # added constraint: constraint((T0323)K165.CB, (T0323)L179.CB) [> 4.2846 = 7.1409 < 9.2832] w=0.2333 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)W198.CB) [> 3.5721 = 5.9534 < 7.7395] w=0.2333 to align # Constraint # added constraint: constraint((T0323)W137.CB, (T0323)L160.CB) [> 4.6231 = 7.7052 < 10.0168] w=0.2333 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)A200.CB) [> 3.4181 = 5.6968 < 7.4059] w=0.2100 to align # Constraint # added constraint: constraint((T0323)T138.CB, (T0323)S154.CB) [> 4.6769 = 7.7948 < 10.1332] w=0.2074 to align # Constraint # added constraint: constraint((T0323)Q136.CB, (T0323)G156.CA) [> 4.3736 = 7.2893 < 9.4761] w=0.2074 to align # Constraint # added constraint: constraint((T0323)A205.CB, (T0323)L214.CB) [> 4.4604 = 7.4341 < 9.6643] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A201.CB) [> 3.7987 = 6.3311 < 8.2304] w=0.2074 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)L195.CB) [> 3.2551 = 5.4251 < 7.0527] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)L197.CB) [> 4.1544 = 6.9240 < 9.0012] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)A200.CB) [> 4.5989 = 7.6649 < 9.9644] w=0.2074 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A200.CB) [> 3.4360 = 5.7267 < 7.4448] w=0.2074 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)A164.CB) [> 3.9683 = 6.6138 < 8.5979] w=0.1815 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)W198.CB) [> 4.4271 = 7.3785 < 9.5921] w=0.1815 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)A193.CB) [> 3.9512 = 6.5854 < 8.5610] w=0.1815 to align # Constraint # added constraint: constraint((T0323)Q17.CB, (T0323)L167.CB) [> 4.2210 = 7.0350 < 9.1454] w=0.1815 to align # Constraint # added constraint: constraint((T0323)I25.CB, (T0323)L195.CB) [> 3.8568 = 6.4281 < 8.3565] w=0.1815 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)Y196.CB) [> 3.3866 = 5.6443 < 7.3376] w=0.1815 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)G202.CA) [> 3.8602 = 6.4336 < 8.3637] w=0.1815 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)Y208.CB) [> 4.1723 = 6.9538 < 9.0400] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)I54.CB) [> 4.0663 = 6.7772 < 8.8104] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)S58.CB) [> 4.1845 = 6.9742 < 9.0665] w=0.1815 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)R209.CB) [> 4.1533 = 6.9223 < 8.9989] w=0.1815 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)S210.CB) [> 3.5232 = 5.8720 < 7.6336] w=0.1815 to align # Constraint # added constraint: constraint((T0323)A139.CB, (T0323)L153.CB) [> 4.3894 = 7.3157 < 9.5104] w=0.1815 to align # Constraint # added constraint: constraint((T0323)V81.CB, (T0323)I96.CB) [> 4.5728 = 7.6213 < 9.9077] w=0.1752 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)H182.CB) [> 4.0414 = 6.7357 < 8.7563] w=0.1556 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)G90.CA) [> 4.4531 = 7.4219 < 9.6485] w=0.1556 to align # Constraint # added constraint: constraint((T0323)S45.CB, (T0323)S58.CB) [> 4.7151 = 7.8584 < 10.2160] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)W186.CB) [> 4.3752 = 7.2920 < 9.4796] w=0.1556 to align # Constraint # added constraint: constraint((T0323)R63.CB, (T0323)A85.CB) [> 3.4609 = 5.7681 < 7.4985] w=0.1556 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)A201.CB) [> 2.6594 = 4.4323 < 5.7619] w=0.1556 to align # Constraint # added constraint: constraint((T0323)A28.CB, (T0323)L195.CB) [> 3.7784 = 6.2974 < 8.1866] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)Y196.CB) [> 3.8459 = 6.4099 < 8.3329] w=0.1556 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)L197.CB) [> 4.2183 = 7.0304 < 9.1396] w=0.1556 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)G202.CA) [> 3.7250 = 6.2082 < 8.0707] w=0.1556 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)K127.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L21.CB, (T0323)W198.CB) [> 3.7598 = 6.2663 < 8.1462] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)V192.CB) [> 3.8771 = 6.4618 < 8.4004] w=0.1556 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)A200.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.1556 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)C194.CB) [> 3.8148 = 6.3579 < 8.2653] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L160.CB, (T0323)G183.CA) [> 4.4857 = 7.4762 < 9.7190] w=0.1556 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)H182.CB) [> 3.6764 = 6.1273 < 7.9654] w=0.1556 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)V81.CB) [> 4.6634 = 7.7724 < 10.1041] w=0.1555 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)G183.CA) [> 4.3292 = 7.2153 < 9.3799] w=0.1555 to align # Constraint # added constraint: constraint((T0323)S82.CB, (T0323)I99.CB) [> 4.1430 = 6.9050 < 8.9766] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)Q32.CB) [> 3.5466 = 5.9109 < 7.6842] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)L33.CB) [> 3.5538 = 5.9230 < 7.7000] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)A193.CB) [> 4.2858 = 7.1430 < 9.2859] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V31.CB, (T0323)W198.CB) [> 3.2139 = 5.3566 < 6.9636] w=0.1296 to align # Constraint # added constraint: constraint((T0323)H105.CB, (T0323)E115.CB) [> 4.3180 = 7.1967 < 9.3557] w=0.1296 to align # Constraint # added constraint: constraint((T0323)K74.CB, (T0323)D112.CB) [> 4.1597 = 6.9329 < 9.0127] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Q23.CB, (T0323)L215.CB) [> 2.9072 = 4.8453 < 6.2989] w=0.1296 to align # Constraint # added constraint: constraint((T0323)R20.CB, (T0323)S210.CB) [> 3.5220 = 5.8701 < 7.6311] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G148.CA, (T0323)V192.CB) [> 3.7827 = 6.3045 < 8.1959] w=0.1296 to align # Constraint # added constraint: constraint((T0323)K199.CB, (T0323)L214.CB) [> 3.2394 = 5.3990 < 7.0187] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)L215.CB) [> 3.4564 = 5.7607 < 7.4888] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L214.CB) [> 2.6665 = 4.4442 < 5.7775] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)E213.CB) [> 4.3322 = 7.2203 < 9.3864] w=0.1296 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)S210.CB) [> 3.7248 = 6.2080 < 8.0704] w=0.1296 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)K199.CB) [> 3.8687 = 6.4479 < 8.3823] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)K199.CB) [> 3.0412 = 5.0686 < 6.5891] w=0.1296 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)L211.CB) [> 3.9658 = 6.6096 < 8.5925] w=0.1296 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)Y196.CB) [> 3.7395 = 6.2326 < 8.1023] w=0.1296 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)L197.CB) [> 4.3126 = 7.1877 < 9.3440] w=0.1296 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)I180.CB) [> 4.1579 = 6.9298 < 9.0087] w=0.1296 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)G171.CA) [> 4.3048 = 7.1747 < 9.3270] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)F113.CB) [> 3.1389 = 5.2315 < 6.8009] w=0.1037 to align # Constraint # added constraint: constraint((T0323)D151.CB, (T0323)G183.CA) [> 3.7270 = 6.2116 < 8.0751] w=0.1037 to align # Constraint # added constraint: constraint((T0323)R2.CB, (T0323)P34.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.1037 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)K176.CB) [> 3.0074 = 5.0123 < 6.5160] w=0.1037 to align # Constraint # added constraint: constraint((T0323)T35.CB, (T0323)A57.CB) [> 3.6808 = 6.1347 < 7.9751] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L178.CB) [> 3.8744 = 6.4574 < 8.3946] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P34.CB, (T0323)L195.CB) [> 4.4542 = 7.4237 < 9.6508] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)L78.CB) [> 4.2489 = 7.0815 < 9.2059] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F113.CB, (T0323)A139.CB) [> 3.3012 = 5.5020 < 7.1526] w=0.1037 to align # Constraint # added constraint: constraint((T0323)P75.CB, (T0323)G109.CA) [> 3.3983 = 5.6638 < 7.3630] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)V192.CB) [> 4.1478 = 6.9130 < 8.9868] w=0.1037 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)C194.CB) [> 3.5369 = 5.8948 < 7.6632] w=0.1037 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)L195.CB) [> 3.9480 = 6.5800 < 8.5540] w=0.1037 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)Y196.CB) [> 4.3035 = 7.1725 < 9.3242] w=0.1037 to align # Constraint # added constraint: constraint((T0323)Q51.CB, (T0323)S92.CB) [> 2.5996 = 4.3327 < 5.6325] w=0.1037 to align # Constraint # added constraint: constraint((T0323)L52.CB, (T0323)S92.CB) [> 4.4350 = 7.3917 < 9.6092] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A56.CB, (T0323)V91.CB) [> 4.5568 = 7.5947 < 9.8732] w=0.1037 to align # Constraint # added constraint: constraint((T0323)A57.CB, (T0323)V91.CB) [> 4.6293 = 7.7155 < 10.0302] w=0.1037 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)Y196.CB) [> 3.6272 = 6.0453 < 7.8589] w=0.1037 to align # Constraint # added constraint: constraint((T0323)S46.CB, (T0323)A57.CB) [> 4.6051 = 7.6751 < 9.9776] w=0.0856 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)L197.CB) [> 3.6295 = 6.0491 < 7.8639] w=0.0778 to align # Constraint # added constraint: constraint((T0323)S154.CB, (T0323)L195.CB) [> 3.9121 = 6.5202 < 8.4763] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V48.CB, (T0323)I96.CB) [> 4.5918 = 7.6529 < 9.9488] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)I134.CB) [> 4.7119 = 7.8531 < 10.2091] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q50.CB, (T0323)D157.CB) [> 4.4857 = 7.4761 < 9.7189] w=0.0778 to align # Constraint # added constraint: constraint((T0323)R94.CB, (T0323)K132.CB) [> 4.3647 = 7.2745 < 9.4568] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)C194.CB) [> 4.4227 = 7.3712 < 9.5826] w=0.0778 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)Y196.CB) [> 4.5452 = 7.5753 < 9.8479] w=0.0778 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)C194.CB) [> 4.7251 = 7.8752 < 10.2378] w=0.0778 to align # Constraint # added constraint: constraint((T0323)G159.CA, (T0323)L211.CB) [> 4.6756 = 7.7927 < 10.1305] w=0.0778 to align # Constraint # added constraint: constraint((T0323)W166.CB, (T0323)A205.CB) [> 4.5070 = 7.5116 < 9.7651] w=0.0778 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)Y196.CB) [> 4.4651 = 7.4418 < 9.6743] w=0.0778 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)R209.CB) [> 4.0241 = 6.7069 < 8.7190] w=0.0778 to align # Constraint # added constraint: constraint((T0323)Q41.CB, (T0323)V68.CB) [> 3.6201 = 6.0335 < 7.8436] w=0.0778 to align # Constraint # added constraint: constraint((T0323)L153.CB, (T0323)A164.CB) [> 4.0591 = 6.7652 < 8.7947] w=0.0778 to align # Constraint # added constraint: constraint((T0323)F22.CB, (T0323)V192.CB) [> 3.5179 = 5.8631 < 7.6221] w=0.0778 to align # Constraint # added constraint: constraint((T0323)T123.CB, (T0323)L147.CB) [> 3.5405 = 5.9009 < 7.6712] w=0.0778 to align # Constraint # added constraint: constraint((T0323)R149.CB, (T0323)V158.CB) [> 3.1665 = 5.2776 < 6.8609] w=0.0588 to align # Constraint # added constraint: constraint((T0323)E49.CB, (T0323)S92.CB) [> 4.3935 = 7.3225 < 9.5193] w=0.0519 to align # Constraint # added constraint: constraint((T0323)F40.CB, (T0323)A71.CB) [> 4.6988 = 7.8313 < 10.1806] w=0.0519 to align # Constraint # added constraint: constraint((T0323)Y61.CB, (T0323)A71.CB) [> 4.2355 = 7.0592 < 9.1769] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L178.CB) [> 3.8247 = 6.3745 < 8.2869] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)A205.CB) [> 4.2461 = 7.0768 < 9.1998] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)L21.CB) [> 3.7747 = 6.2911 < 8.1784] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)Y189.CB) [> 3.7944 = 6.3240 < 8.2212] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V152.CB, (T0323)V192.CB) [> 3.7908 = 6.3180 < 8.2134] w=0.0519 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)L195.CB) [> 4.5100 = 7.5166 < 9.7716] w=0.0519 to align # Constraint # added constraint: constraint((T0323)D157.CB, (T0323)K199.CB) [> 4.3519 = 7.2532 < 9.4291] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)Y196.CB) [> 4.3939 = 7.3232 < 9.5202] w=0.0519 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)L214.CB) [> 4.4098 = 7.3496 < 9.5545] w=0.0519 to align # Constraint # added constraint: constraint((T0323)V44.CB, (T0323)V68.CB) [> 4.5189 = 7.5316 < 9.7911] w=0.0519 to align # Constraint # added constraint: constraint((T0323)L150.CB, (T0323)A193.CB) [> 3.3871 = 5.6452 < 7.3388] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A139.CB, (T0323)V152.CB) [> 4.4483 = 7.4138 < 9.6380] w=0.0519 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)I134.CB) [> 3.1994 = 5.3323 < 6.9320] w=0.0519 to align # Constraint # added constraint: constraint((T0323)E115.CB, (T0323)G135.CA) [> 3.2079 = 5.3465 < 6.9504] w=0.0519 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)A187.CB) [> 3.6683 = 6.1138 < 7.9479] w=0.0518 to align # Constraint # added constraint: constraint((T0323)G163.CA, (T0323)S210.CB) [> 4.4512 = 7.4187 < 9.6443] w=0.0518 to align # Constraint # added constraint: constraint((T0323)M141.CB, (T0323)C194.CB) [> 3.8630 = 6.4383 < 8.3698] w=0.0518 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)A193.CB) [> 3.0806 = 5.1343 < 6.6746] w=0.0518 to align # Constraint # added constraint: constraint((T0323)C103.CB, (T0323)D157.CB) [> 3.2717 = 5.4529 < 7.0887] w=0.0392 to align # Constraint # added constraint: constraint((T0323)C103.CB, (T0323)R149.CB) [> 4.0552 = 6.7586 < 8.7862] w=0.0392 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)S210.CB) [> 4.4407 = 7.4012 < 9.6215] w=0.0259 to align # Constraint # added constraint: constraint((T0323)F24.CB, (T0323)E207.CB) [> 4.7971 = 7.9952 < 10.3938] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L78.CB, (T0323)F113.CB) [> 4.6569 = 7.7616 < 10.0900] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V11.CB, (T0323)G169.CA) [> 3.2775 = 5.4624 < 7.1011] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y3.CB, (T0323)T35.CB) [> 3.6613 = 6.1022 < 7.9329] w=0.0259 to align # Constraint # added constraint: constraint((T0323)R162.CB, (T0323)A205.CB) [> 4.1933 = 6.9888 < 9.0854] w=0.0259 to align # Constraint # added constraint: constraint((T0323)G156.CA, (T0323)W198.CB) [> 3.8071 = 6.3451 < 8.2487] w=0.0259 to align # Constraint # added constraint: constraint((T0323)F145.CB, (T0323)V155.CB) [> 4.6603 = 7.7671 < 10.0972] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L167.CB, (T0323)L178.CB) [> 4.2101 = 7.0169 < 9.1219] w=0.0259 to align # Constraint # added constraint: constraint((T0323)A164.CB, (T0323)L197.CB) [> 4.5861 = 7.6435 < 9.9365] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Q161.CB, (T0323)N170.CB) [> 3.8530 = 6.4217 < 8.3482] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V158.CB, (T0323)L211.CB) [> 4.3925 = 7.3209 < 9.5172] w=0.0259 to align # Constraint # added constraint: constraint((T0323)V158.CB, (T0323)A200.CB) [> 4.3845 = 7.3075 < 9.4998] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y208.CB, (T0323)H217.CB) [> 4.5914 = 7.6523 < 9.9480] w=0.0259 to align # Constraint # added constraint: constraint((T0323)A205.CB, (T0323)Q220.CB) [> 4.4938 = 7.4897 < 9.7366] w=0.0259 to align # Constraint # added constraint: constraint((T0323)G169.CA, (T0323)Q220.CB) [> 4.6300 = 7.7167 < 10.0317] w=0.0259 to align # Constraint # added constraint: constraint((T0323)Y168.CB, (T0323)E213.CB) [> 4.7513 = 7.9189 < 10.2945] w=0.0259 to align # Constraint # added constraint: constraint((T0323)I27.CB, (T0323)Y208.CB) [> 3.9949 = 6.6582 < 8.6557] w=0.0259 to align # Constraint # added constraint: constraint((T0323)R149.CB, (T0323)A193.CB) [> 4.4091 = 7.3485 < 9.5530] w=0.0259 to align # Constraint # added constraint: constraint((T0323)L116.CB, (T0323)I134.CB) [> 4.5171 = 7.5286 < 9.7871] w=0.0259 to align # Constraint # added constraint: constraint((T0323)S82.CB, (T0323)K93.CB) [> 4.5299 = 7.5498 < 9.8147] w=0.0196 to align # Constraint # added constraint: constraint((T0323)K165.CB, (T0323)I180.CB) [> 3.7286 = 6.2143 < 8.0786] w=0.0196 to align # Constraint # added constraint: constraint((T0323)V68.CB, (T0323)I99.CB) [> 4.5569 = 7.5948 < 9.8732] w=0.0078 to align # Constraint # added constraint: constraint((T0323)I125.CB, (T0323)G135.CA) [> 3.2385 = 5.3976 < 7.0168] w=0.0052 to align # Constraint # added constraint: constraint((T0323)L67.CB, (T0323)V91.CB) [> 4.2206 = 7.0344 < 9.1447] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I54.CB, (T0323)M141.CB) [> 3.4939 = 5.8231 < 7.5701] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I47.CB, (T0323)K132.CB) [> 4.4906 = 7.4844 < 9.7297] w=0.0052 to align # Constraint # added constraint: constraint((T0323)S42.CB, (T0323)L147.CB) [> 3.8728 = 6.4547 < 8.3912] w=0.0052 to align # Constraint # added constraint: constraint((T0323)I54.CB, (T0323)Y196.CB) [> 3.5068 = 5.8447 < 7.5981] w=0.0026 to align # Constraint # added constraint: constraint((T0323)V155.CB, (T0323)G169.CA) [> 3.4714 = 5.7857 < 7.5215] w=0.0026 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0323/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0323/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 702, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 706, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 686, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 690, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 692, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 4 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)L128.O and (T0323)T129.N only 0.000 apart, marking (T0323)T129.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)G218.O and (T0323)N219.N only 0.000 apart, marking (T0323)N219.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)K36.O and (T0323)P37.N only 0.000 apart, marking (T0323)P37.N as missing WARNING: atoms too close: (T0323)V68.O and (T0323)G69.N only 0.000 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)D83.O and (T0323)E84.N only 0.000 apart, marking (T0323)E84.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.1359 model score -0.1440 model score -0.1744 model score -0.1202 model score -0.0191 model score -0.1482 model score -0.2634 model score -0.1814 model score -0.1568 model score -0.1623 model score -0.1857 model score -0.1750 model score -0.1752 model score -0.1345 model score -0.1842 model score -0.4015 model score -0.4070 model score -0.3117 model score 0.1938 model score -0.0112 model score 1.3181 model score 1.5594 model score 1.3368 model score 1.3228 model score 1.2431 model score -0.2508 model score -0.1714 model score -0.1851 model score -0.1775 model score -0.1850 model score -0.1808 model score -0.3201 model score -0.3246 model score -0.4174 model score -0.3479 model score -0.0508 model score -0.0545 model score 0.3143 model score 0.0007 model score -0.0591 model score 0.0630 model score -0.2351 model score 1.2781 model score 1.2781 model score 1.2776 model score 1.2781 model score 1.2780 model score -0.2095 model score -0.1968 model score -0.1830 model score -0.0548 model score -0.3465 model score -0.2938 model score -0.3201 model score -0.4174 model score -0.3246 model score -0.2176 model score -0.3491 model score -0.3744 model score 0.2496 model score 0.3205 model score 0.9835 model score 1.2765 model score 1.2768 model score 1.2764 model score 1.2765 model score 1.2775 model score 1.2765 model score 1.2768 model score 1.2764 model score 1.2775 model score 1.2769 model score 2.2066 model score 2.4629 model score 2.4834 model score 2.2323 model score 2.2761 model score -0.1811 model score -0.0394 model score 0.3125 model score 0.4558 model score 0.3131 model score 1.2766 model score 1.2758 model score 1.2786 model score 1.2771 model score 1.2752 model score -0.1829 model score -0.0613 model score -0.0424 model score -0.1910 model score -0.2173 model score -0.2078 model score -0.1223 model score -0.1871 model score -0.1410 model score -0.3121 model score -0.1991 model score -0.2336 model score -0.2336 model score -0.2264 model score 1.5923 model score 1.6774 model score 1.2505 model score 1.5777 model score -0.0046 model score -0.1060 model score -0.0988 model score -0.1291 model score -0.3231 model score 1.2744 model score 1.8714 model score -0.4365 model score -0.1563 model score 2.0624 model score -0.0915 model score -0.3867 model score 1.8764 model score -0.1477 model score 0.2565 model score 2.0624 model score -0.4356 model score -0.2832 model score -0.3674 model score -0.3150 model score -0.3786 model score -0.0046 model score -0.2908 model score -0.2896 model score -0.3091 model score -0.2860 model score -0.2917 model score -0.2978 model score -0.3073 model score -0.2714 model score -0.2558 model score -0.3044 model score -0.2627 model score -0.2436 model score -0.1620 model score -0.2466 model score -0.2277 model score -0.1952 model score 0.0981 model score 0.1454 model score 0.1266 model score 0.1266 model score 0.1342 model score -0.2436 model score -0.2436 model score 0.0227 model score -0.0621 model score -0.0621 model score -0.3232 model score -0.2840 model score -0.2079 model score -0.3299 model score -0.1872 model score -0.1768 model score 0.0436 model score -0.0246 model score -0.3129 model score 0.0892 model score -0.2012 model score 0.0093 model score -0.0644 model score -0.3402 model score 0.0764 model score 0.2659 model score 0.1301 model score 0.2294 model score 0.1863 model score 0.0884 model score 0.1025 model score 0.1620 model score 0.1524 model score -0.1003 model score 1.2771 model score 1.2771 model score 1.2766 model score 1.2767 model score 1.2771 model score 1.2748 model score 1.2745 model score 1.2771 model score 1.2767 model score 1.2766 model score 0.0816 model score -0.1471 model score -0.1670 model score -0.4413 model score 0.0511 model score -0.2083 model score -0.1096 model score -0.3299 model score 0.0954 model score 0.2866 model score -0.2083 model score -0.1096 model score -0.3171 model score 0.0326 model score -0.0363 model score -0.0885 model score -0.2074 model score -0.3290 model score 0.0572 model score 0.0680 model score 1.2765 model score 1.2771 model score 1.2766 model score 1.2786 model score 1.2764 model score -0.2468 model score 1.2765 model score 1.2771 model score 1.2766 model score 1.2771 model score 1.2756 model score -0.2452 model score -0.3045 model score -0.3441 model score -0.3750 model score -0.2264 model score -0.1382 model score -0.1883 model score 1.2771 model score 1.2772 model score 1.2766 model score 1.2757 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2767 model score 1.2771 model score -0.0790 model score -0.0690 model score -0.0372 model score -0.0953 model score -0.1120 model score 2.3096 model score 2.2699 model score 2.1680 model score 2.4182 model score 2.0633 model score -0.1975 model score -0.2859 model score -0.0752 model score 0.0631 model score -0.2850 model score -0.2605 model score -0.2064 model score -0.2498 model score -0.2687 model score -0.4745 model score 0.3226 model score -0.2785 model score 0.2200 model score -0.2483 model score 0.2626 model score -0.2214 model score -0.0337 USE_META, weight: 0.8970 cost: -0.1359 min: -0.4745 max: 2.4834 USE_META, weight: 0.8995 cost: -0.1440 min: -0.4745 max: 2.4834 USE_META, weight: 0.9087 cost: -0.1744 min: -0.4745 max: 2.4834 USE_META, weight: 0.8922 cost: -0.1202 min: -0.4745 max: 2.4834 USE_META, weight: 0.8614 cost: -0.0191 min: -0.4745 max: 2.4834 USE_META, weight: 0.9007 cost: -0.1482 min: -0.4745 max: 2.4834 USE_META, weight: 0.9358 cost: -0.2634 min: -0.4745 max: 2.4834 USE_META, weight: 0.9108 cost: -0.1814 min: -0.4745 max: 2.4834 USE_META, weight: 0.9033 cost: -0.1568 min: -0.4745 max: 2.4834 USE_META, weight: 0.9050 cost: -0.1623 min: -0.4745 max: 2.4834 USE_META, weight: 0.9121 cost: -0.1857 min: -0.4745 max: 2.4834 USE_META, weight: 0.9089 cost: -0.1750 min: -0.4745 max: 2.4834 USE_META, weight: 0.9089 cost: -0.1752 min: -0.4745 max: 2.4834 USE_META, weight: 0.8965 cost: -0.1345 min: -0.4745 max: 2.4834 USE_META, weight: 0.9117 cost: -0.1842 min: -0.4745 max: 2.4834 USE_META, weight: 0.9778 cost: -0.4015 min: -0.4745 max: 2.4834 USE_META, weight: 0.9795 cost: -0.4070 min: -0.4745 max: 2.4834 USE_META, weight: 0.9505 cost: -0.3117 min: -0.4745 max: 2.4834 USE_META, weight: 0.7966 cost: 0.1938 min: -0.4745 max: 2.4834 USE_META, weight: 0.8590 cost: -0.0112 min: -0.4745 max: 2.4834 USE_META, weight: 0.4546 cost: 1.3181 min: -0.4745 max: 2.4834 USE_META, weight: 0.3811 cost: 1.5594 min: -0.4745 max: 2.4834 USE_META, weight: 0.4489 cost: 1.3368 min: -0.4745 max: 2.4834 USE_META, weight: 0.4531 cost: 1.3228 min: -0.4745 max: 2.4834 USE_META, weight: 0.4774 cost: 1.2431 min: -0.4745 max: 2.4834 USE_META, weight: 0.9319 cost: -0.2508 min: -0.4745 max: 2.4834 USE_META, weight: 0.9078 cost: -0.1714 min: -0.4745 max: 2.4834 USE_META, weight: 0.9119 cost: -0.1851 min: -0.4745 max: 2.4834 USE_META, weight: 0.9096 cost: -0.1775 min: -0.4745 max: 2.4834 USE_META, weight: 0.9119 cost: -0.1850 min: -0.4745 max: 2.4834 USE_META, weight: 0.9106 cost: -0.1808 min: -0.4745 max: 2.4834 USE_META, weight: 0.9530 cost: -0.3201 min: -0.4745 max: 2.4834 USE_META, weight: 0.9544 cost: -0.3246 min: -0.4745 max: 2.4834 USE_META, weight: 0.9826 cost: -0.4174 min: -0.4745 max: 2.4834 USE_META, weight: 0.9615 cost: -0.3479 min: -0.4745 max: 2.4834 USE_META, weight: 0.8711 cost: -0.0508 min: -0.4745 max: 2.4834 USE_META, weight: 0.8722 cost: -0.0545 min: -0.4745 max: 2.4834 USE_META, weight: 0.7600 cost: 0.3143 min: -0.4745 max: 2.4834 USE_META, weight: 0.8554 cost: 0.0007 min: -0.4745 max: 2.4834 USE_META, weight: 0.8736 cost: -0.0591 min: -0.4745 max: 2.4834 USE_META, weight: 0.8365 cost: 0.0630 min: -0.4745 max: 2.4834 USE_META, weight: 0.9272 cost: -0.2351 min: -0.4745 max: 2.4834 USE_META, weight: 0.4667 cost: 1.2781 min: -0.4745 max: 2.4834 USE_META, weight: 0.4667 cost: 1.2781 min: -0.4745 max: 2.4834 USE_META, weight: 0.4669 cost: 1.2776 min: -0.4745 max: 2.4834 USE_META, weight: 0.4667 cost: 1.2781 min: -0.4745 max: 2.4834 USE_META, weight: 0.4668 cost: 1.2780 min: -0.4745 max: 2.4834 USE_META, weight: 0.9194 cost: -0.2095 min: -0.4745 max: 2.4834 USE_META, weight: 0.9155 cost: -0.1968 min: -0.4745 max: 2.4834 USE_META, weight: 0.9113 cost: -0.1830 min: -0.4745 max: 2.4834 USE_META, weight: 0.8723 cost: -0.0548 min: -0.4745 max: 2.4834 USE_META, weight: 0.9611 cost: -0.3465 min: -0.4745 max: 2.4834 USE_META, weight: 0.9450 cost: -0.2938 min: -0.4745 max: 2.4834 USE_META, weight: 0.9530 cost: -0.3201 min: -0.4745 max: 2.4834 USE_META, weight: 0.9826 cost: -0.4174 min: -0.4745 max: 2.4834 USE_META, weight: 0.9544 cost: -0.3246 min: -0.4745 max: 2.4834 USE_META, weight: 0.9218 cost: 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-0.2214 min: -0.4745 max: 2.4834 USE_META, weight: 0.8659 cost: -0.0337 min: -0.4745 max: 2.4834 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.9997 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.9997 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.9997 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.7565 eval: 0.0099 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.7565 eval: 0.0099 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.7565 eval: 0.0099 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.1000 eval: 0.0365 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.1000 eval: 0.0365 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 0.1000 eval: 0.0365 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0365 Number of contacts in models: 262 Number of contacts in alignments: 42 NUMB_ALIGNS: 42 Adding 7708 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -367.1183, CN propb: -367.1183 weights: 0.3735 constraints: 402 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 402 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 402 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 7306 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 7306 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 7708 # command: