# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0322/ # command:# Making conformation for sequence T0322 numbered 1 through 157 Created new target T0322 from T0322.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0322/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0322//projects/compbio/experiments/protein-predict/casp7/T0322/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0322//projects/compbio/experiments/protein-predict/casp7/T0322/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0322/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0322/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0322)G106.CA, (T0322)R123.CB) [> 3.8948 = 6.4914 < 8.4388] w=1.0000 to align # Constraint # added constraint: constraint((T0322)G106.CA, (T0322)G122.CA) [> 3.9862 = 6.6437 < 8.6368] w=1.0000 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)I124.CB) [> 4.2225 = 7.0375 < 9.1487] w=1.0000 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)I124.CB) [> 3.6647 = 6.1078 < 7.9401] w=0.9899 to align # Constraint # added constraint: constraint((T0322)V104.CB, (T0322)I124.CB) [> 3.4001 = 5.6669 < 7.3669] w=0.9899 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)L131.CB) [> 3.5949 = 5.9914 < 7.7889] w=0.9862 to align # Constraint # added constraint: constraint((T0322)V120.CB, (T0322)G136.CA) [> 3.3075 = 5.5125 < 7.1662] w=0.9849 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)G136.CA) [> 3.7632 = 6.2721 < 8.1537] w=0.9849 to align # Constraint # added constraint: constraint((T0322)G108.CA, (T0322)G122.CA) [> 2.6912 = 4.4854 < 5.8310] w=0.9798 to align # Constraint # added constraint: constraint((T0322)G108.CA, (T0322)V120.CB) [> 3.6052 = 6.0086 < 7.8112] w=0.9798 to align # Constraint # added constraint: constraint((T0322)G106.CA, (T0322)I124.CB) [> 2.9884 = 4.9807 < 6.4749] w=0.9798 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)G134.CA) [> 3.1933 = 5.3222 < 6.9189] w=0.9758 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)V137.CB) [> 4.1495 = 6.9158 < 8.9905] w=0.9749 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)W125.CB) [> 2.8953 = 4.8255 < 6.2732] w=0.9697 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)A98.CB) [> 2.4803 = 4.1339 < 5.3740] w=0.9670 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)G97.CA) [> 4.0169 = 6.6948 < 8.7032] w=0.9670 to align # Constraint # added constraint: constraint((T0322)R123.CB, (T0322)T133.CB) [> 3.3227 = 5.5378 < 7.1992] w=0.9658 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)I132.CB) [> 3.7977 = 6.3296 < 8.2284] w=0.9658 to align # Constraint # added constraint: constraint((T0322)F94.CB, (T0322)I132.CB) [> 3.4616 = 5.7693 < 7.5001] w=0.9658 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)V137.CB) [> 3.3498 = 5.5830 < 7.2579] w=0.9648 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)V137.CB) [> 2.9497 = 4.9161 < 6.3909] w=0.9648 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)G136.CA) [> 3.0192 = 5.0320 < 6.5415] w=0.9648 to align # Constraint # added constraint: constraint((T0322)V104.CB, (T0322)W125.CB) [> 4.1490 = 6.9149 < 8.9894] w=0.9595 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)G134.CA) [> 4.0169 = 6.6949 < 8.7033] w=0.9556 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)G136.CA) [> 4.3978 = 7.3297 < 9.5286] w=0.9547 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)F138.CB) [> 4.0020 = 6.6700 < 8.6710] w=0.9537 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)G122.CA) [> 3.6204 = 6.0340 < 7.8442] w=0.9507 to align # Constraint # added constraint: constraint((T0322)E109.CB, (T0322)R121.CB) [> 3.1450 = 5.2417 < 6.8142] w=0.9494 to align # Constraint # added constraint: constraint((T0322)G108.CA, (T0322)R123.CB) [> 4.2379 = 7.0632 < 9.1821] w=0.9494 to align # Constraint # added constraint: constraint((T0322)G108.CA, (T0322)R121.CB) [> 3.7704 = 6.2840 < 8.1692] w=0.9494 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)R123.CB) [> 3.0157 = 5.0261 < 6.5340] w=0.9494 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)G122.CA) [> 3.6432 = 6.0721 < 7.8937] w=0.9494 to align # Constraint # added constraint: constraint((T0322)G106.CA, (T0322)W125.CB) [> 3.9440 = 6.5733 < 8.5453] w=0.9484 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)V137.CB) [> 4.1947 = 6.9912 < 9.0886] w=0.9473 to align # Constraint # added constraint: constraint((T0322)I76.CB, (T0322)G108.CA) [> 3.5945 = 5.9908 < 7.7880] w=0.9461 to align # Constraint # added constraint: constraint((T0322)R123.CB, (T0322)G134.CA) [> 4.1945 = 6.9909 < 9.0882] w=0.9456 to align # Constraint # added constraint: constraint((T0322)M91.CB, (T0322)T135.CB) [> 3.0485 = 5.0809 < 6.6052] w=0.9455 to align # Constraint # added constraint: constraint((T0322)C92.CB, (T0322)T133.CB) [> 4.1852 = 6.9753 < 9.0679] w=0.9455 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)K139.CB) [> 3.3516 = 5.5859 < 7.2617] w=0.9445 to align # Constraint # added constraint: constraint((T0322)E109.CB, (T0322)G122.CA) [> 4.0920 = 6.8200 < 8.8661] w=0.9393 to align # Constraint # added constraint: constraint((T0322)N59.CB, (T0322)A98.CB) [> 3.8110 = 6.3516 < 8.2570] w=0.9367 to align # Constraint # added constraint: constraint((T0322)N59.CB, (T0322)G97.CA) [> 3.1032 = 5.1720 < 6.7236] w=0.9367 to align # Constraint # added constraint: constraint((T0322)S96.CB, (T0322)L131.CB) [> 3.3141 = 5.5235 < 7.1805] w=0.9358 to align # Constraint # added constraint: constraint((T0322)C92.CB, (T0322)G134.CA) [> 3.0301 = 5.0501 < 6.5651] w=0.9354 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)T135.CB) [> 3.4858 = 5.8097 < 7.5525] w=0.9354 to align # Constraint # added constraint: constraint((T0322)I124.CB, (T0322)T133.CB) [> 4.1181 = 6.8635 < 8.9225] w=0.9354 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)T135.CB) [> 4.1830 = 6.9717 < 9.0632] w=0.9353 to align # Constraint # added constraint: constraint((T0322)M91.CB, (T0322)G136.CA) [> 3.8608 = 6.4347 < 8.3651] w=0.9344 to align # Constraint # added constraint: constraint((T0322)F68.CB, (T0322)G106.CA) [> 3.9607 = 6.6012 < 8.5816] w=0.9326 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)K139.CB) [> 3.8546 = 6.4243 < 8.3516] w=0.9268 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)I132.CB) [> 3.3770 = 5.6283 < 7.3169] w=0.9246 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)F138.CB) [> 3.1205 = 5.2008 < 6.7611] w=0.9234 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)L90.CB) [> 4.2391 = 7.0651 < 9.1847] w=0.9222 to align # Constraint # added constraint: constraint((T0322)L110.CB, (T0322)V120.CB) [> 3.4430 = 5.7383 < 7.4598] w=0.9213 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)E105.CB) [> 4.3784 = 7.2973 < 9.4865] w=0.9181 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)G106.CA) [> 3.7178 = 6.1963 < 8.0552] w=0.9181 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)F138.CB) [> 3.5656 = 5.9427 < 7.7255] w=0.9161 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)F138.CB) [> 3.8515 = 6.4191 < 8.3448] w=0.9161 to align # Constraint # added constraint: constraint((T0322)F68.CB, (T0322)I124.CB) [> 4.0505 = 6.7508 < 8.7760] w=0.9151 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)C92.CB) [> 3.7174 = 6.1957 < 8.0543] w=0.9143 to align # Constraint # added constraint: constraint((T0322)A72.CB, (T0322)G106.CA) [> 3.3154 = 5.5257 < 7.1834] w=0.9140 to align # Constraint # added constraint: constraint((T0322)E109.CB, (T0322)V120.CB) [> 4.0955 = 6.8258 < 8.8735] w=0.9090 to align # Constraint # added constraint: constraint((T0322)V104.CB, (T0322)A126.CB) [> 3.4687 = 5.7812 < 7.5155] w=0.9080 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)K99.CB) [> 4.3395 = 7.2326 < 9.4023] w=0.9065 to align # Constraint # added constraint: constraint((T0322)N59.CB, (T0322)K99.CB) [> 3.5572 = 5.9286 < 7.7072] w=0.9065 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)T135.CB) [> 4.1250 = 6.8749 < 8.9374] w=0.9051 to align # Constraint # added constraint: constraint((T0322)I111.CB, (T0322)R121.CB) [> 3.1572 = 5.2620 < 6.8406] w=0.9032 to align # Constraint # added constraint: constraint((T0322)I111.CB, (T0322)V120.CB) [> 3.9511 = 6.5852 < 8.5608] w=0.9032 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)K139.CB) [> 3.4763 = 5.7938 < 7.5320] w=0.9022 to align # Constraint # added constraint: constraint((T0322)D93.CB, (T0322)T133.CB) [> 3.2195 = 5.3659 < 6.9757] w=0.8950 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)F94.CB) [> 3.9153 = 6.5254 < 8.4830] w=0.8888 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)E105.CB) [> 3.7478 = 6.2463 < 8.1202] w=0.8878 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)T133.CB) [> 4.1398 = 6.8997 < 8.9696] w=0.8855 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)V120.CB) [> 3.0645 = 5.1074 < 6.6397] w=0.8850 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)K139.CB) [> 3.2675 = 5.4458 < 7.0796] w=0.8847 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)G136.CA) [> 3.8201 = 6.3668 < 8.2768] w=0.8838 to align # Constraint # added constraint: constraint((T0322)F68.CB, (T0322)V104.CB) [> 3.9173 = 6.5288 < 8.4874] w=0.8812 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)G101.CA) [> 3.0655 = 5.1092 < 6.6420] w=0.8790 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)A98.CB) [> 3.5158 = 5.8597 < 7.6177] w=0.8790 to align # Constraint # added constraint: constraint((T0322)L110.CB, (T0322)T119.CB) [> 4.4774 = 7.4624 < 9.7011] w=0.8786 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)T130.CB) [> 3.4999 = 5.8331 < 7.5831] w=0.8756 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)G106.CA) [> 3.2752 = 5.4587 < 7.0963] w=0.8750 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)F94.CB) [> 4.3962 = 7.3270 < 9.5251] w=0.8749 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)C60.CB) [> 3.3224 = 5.5374 < 7.1986] w=0.8689 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)T133.CB) [> 3.8691 = 6.4485 < 8.3830] w=0.8649 to align # Constraint # added constraint: constraint((T0322)A72.CB, (T0322)G108.CA) [> 3.3554 = 5.5924 < 7.2701] w=0.8648 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)A72.CB) [> 2.8260 = 4.7100 < 6.1230] w=0.8601 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)G106.CA) [> 4.1763 = 6.9605 < 9.0487] w=0.8570 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)G108.CA) [> 4.3630 = 7.2716 < 9.4531] w=0.8449 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)E107.CB) [> 3.1339 = 5.2231 < 6.7901] w=0.8449 to align # Constraint # added constraint: constraint((T0322)A46.CB, (T0322)V104.CB) [> 4.0859 = 6.8098 < 8.8528] w=0.8347 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)V137.CB) [> 4.3792 = 7.2987 < 9.4883] w=0.8338 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)W125.CB) [> 4.3064 = 7.1773 < 9.3305] w=0.8270 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)V137.CB) [> 3.6708 = 6.1180 < 7.9534] w=0.8258 to align # Constraint # added constraint: constraint((T0322)A46.CB, (T0322)E105.CB) [> 3.0996 = 5.1661 < 6.7159] w=0.8246 to align # Constraint # added constraint: constraint((T0322)D93.CB, (T0322)I132.CB) [> 4.0451 = 6.7419 < 8.7645] w=0.8236 to align # Constraint # added constraint: constraint((T0322)D102.CB, (T0322)A126.CB) [> 3.3459 = 5.5766 < 7.2496] w=0.8223 to align # Constraint # added constraint: constraint((T0322)V120.CB, (T0322)F138.CB) [> 4.1462 = 6.9103 < 8.9835] w=0.8190 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)V104.CB) [> 3.8256 = 6.3760 < 8.2887] w=0.8183 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)I76.CB) [> 2.7270 = 4.5450 < 5.9084] w=0.8175 to align # Constraint # added constraint: constraint((T0322)C92.CB, (T0322)I132.CB) [> 3.7030 = 6.1717 < 8.0232] w=0.8157 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)F138.CB) [> 2.8495 = 4.7492 < 6.1739] w=0.8155 to align # Constraint # added constraint: constraint((T0322)R123.CB, (T0322)I132.CB) [> 4.2736 = 7.1226 < 9.2594] w=0.8136 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)G134.CA) [> 3.9621 = 6.6035 < 8.5846] w=0.8090 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)V137.CB) [> 2.9993 = 4.9988 < 6.4984] w=0.8082 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)G136.CA) [> 3.9632 = 6.6054 < 8.5870] w=0.8082 to align # Constraint # added constraint: constraint((T0322)A98.CB, (T0322)L131.CB) [> 3.3187 = 5.5312 < 7.1906] w=0.8035 to align # Constraint # added constraint: constraint((T0322)G97.CA, (T0322)L131.CB) [> 3.6822 = 6.1370 < 7.9781] w=0.8035 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)L117.CB) [> 4.3766 = 7.2944 < 9.4826] w=0.8017 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)I124.CB) [> 3.8911 = 6.4851 < 8.4307] w=0.8007 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)F138.CB) [> 4.2531 = 7.0885 < 9.2150] w=0.7997 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)F68.CB) [> 3.2110 = 5.3516 < 6.9571] w=0.7982 to align # Constraint # added constraint: constraint((T0322)G58.CA, (T0322)K99.CB) [> 3.9865 = 6.6442 < 8.6375] w=0.7978 to align # Constraint # added constraint: constraint((T0322)A46.CB, (T0322)G106.CA) [> 4.3099 = 7.1831 < 9.3380] w=0.7952 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)G108.CA) [> 3.3473 = 5.5788 < 7.2524] w=0.7947 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)F138.CB) [> 3.9583 = 6.5971 < 8.5762] w=0.7944 to align # Constraint # added constraint: constraint((T0322)H53.CB, (T0322)M64.CB) [> 2.7206 = 4.5344 < 5.8947] w=0.7906 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)V104.CB) [> 3.0771 = 5.1286 < 6.6671] w=0.7881 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)E107.CB) [> 4.3702 = 7.2836 < 9.4687] w=0.7872 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)G108.CA) [> 3.9672 = 6.6120 < 8.5955] w=0.7807 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)A72.CB) [> 3.5159 = 5.8598 < 7.6178] w=0.7796 to align # Constraint # added constraint: constraint((T0322)M116.CB, (T0322)A140.CB) [> 3.3679 = 5.6132 < 7.2972] w=0.7790 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)R75.CB) [> 3.3297 = 5.5495 < 7.2144] w=0.7742 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)T135.CB) [> 3.7635 = 6.2725 < 8.1543] w=0.7695 to align # Constraint # added constraint: constraint((T0322)A72.CB, (T0322)G122.CA) [> 4.1611 = 6.9352 < 9.0158] w=0.7640 to align # Constraint # added constraint: constraint((T0322)R48.CB, (T0322)W103.CB) [> 3.3107 = 5.5179 < 7.1733] w=0.7603 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)L100.CB) [> 2.9802 = 4.9671 < 6.4572] w=0.7578 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)D102.CB) [> 3.0234 = 5.0390 < 6.5507] w=0.7576 to align # Constraint # added constraint: constraint((T0322)M116.CB, (T0322)K139.CB) [> 3.9248 = 6.5413 < 8.5037] w=0.7531 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)R75.CB) [> 3.8692 = 6.4486 < 8.3832] w=0.7502 to align # Constraint # added constraint: constraint((T0322)A46.CB, (T0322)W103.CB) [> 3.5195 = 5.8658 < 7.6255] w=0.7437 to align # Constraint # added constraint: constraint((T0322)D70.CB, (T0322)T87.CB) [> 3.8559 = 6.4265 < 8.3545] w=0.7404 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)G134.CA) [> 4.1355 = 6.8925 < 8.9602] w=0.7327 to align # Constraint # added constraint: constraint((T0322)R48.CB, (T0322)G101.CA) [> 3.8483 = 6.4139 < 8.3380] w=0.7266 to align # Constraint # added constraint: constraint((T0322)F94.CB, (T0322)L131.CB) [> 4.4138 = 7.3563 < 9.5632] w=0.7222 to align # Constraint # added constraint: constraint((T0322)I76.CB, (T0322)V120.CB) [> 3.7717 = 6.2861 < 8.1719] w=0.7185 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)F68.CB) [> 3.9467 = 6.5778 < 8.5511] w=0.7179 to align # Constraint # added constraint: constraint((T0322)W103.CB, (T0322)A126.CB) [> 4.1672 = 6.9453 < 9.0289] w=0.7174 to align # Constraint # added constraint: constraint((T0322)Q42.CB, (T0322)G108.CA) [> 3.6796 = 6.1326 < 7.9724] w=0.7169 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)A140.CB) [> 4.1016 = 6.8359 < 8.8867] w=0.7078 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)V104.CB) [> 4.2000 = 6.9999 < 9.0999] w=0.7049 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)T133.CB) [> 4.3598 = 7.2664 < 9.4463] w=0.7023 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)C92.CB) [> 4.2263 = 7.0439 < 9.1571] w=0.6941 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)A126.CB) [> 4.4570 = 7.4284 < 9.6569] w=0.6934 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)W103.CB) [> 4.2536 = 7.0893 < 9.2161] w=0.6870 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)M71.CB) [> 3.7155 = 6.1924 < 8.0502] w=0.6805 to align # Constraint # added constraint: constraint((T0322)G74.CA, (T0322)W85.CB) [> 3.7381 = 6.2302 < 8.0992] w=0.6780 to align # Constraint # added constraint: constraint((T0322)I76.CB, (T0322)L110.CB) [> 3.8974 = 6.4956 < 8.4443] w=0.6762 to align # Constraint # added constraint: constraint((T0322)Q42.CB, (T0322)E109.CB) [> 3.0839 = 5.1398 < 6.6817] w=0.6639 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)L79.CB) [> 4.0768 = 6.7946 < 8.8330] w=0.6521 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)F118.CB) [> 4.1391 = 6.8984 < 8.9680] w=0.6521 to align # Constraint # added constraint: constraint((T0322)E50.CB, (T0322)L100.CB) [> 3.9669 = 6.6116 < 8.5950] w=0.6425 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)I124.CB) [> 4.6162 = 7.6936 < 10.0017] w=0.6425 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)C92.CB) [> 4.0149 = 6.6915 < 8.6989] w=0.6416 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)G136.CA) [> 4.3572 = 7.2621 < 9.4407] w=0.6363 to align # Constraint # added constraint: constraint((T0322)V120.CB, (T0322)V137.CB) [> 4.1525 = 6.9208 < 8.9971] w=0.6233 to align # Constraint # added constraint: constraint((T0322)S84.CB, (T0322)A140.CB) [> 4.1970 = 6.9950 < 9.0936] w=0.6201 to align # Constraint # added constraint: constraint((T0322)R48.CB, (T0322)D102.CB) [> 4.2552 = 7.0920 < 9.2196] w=0.6109 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)G136.CA) [> 3.8963 = 6.4938 < 8.4420] w=0.6042 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)L131.CB) [> 4.2344 = 7.0572 < 9.1744] w=0.5965 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)G122.CA) [> 3.9781 = 6.6301 < 8.6191] w=0.5915 to align # Constraint # added constraint: constraint((T0322)S84.CB, (T0322)L141.CB) [> 3.5176 = 5.8628 < 7.6216] w=0.5900 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)V104.CB) [> 4.3128 = 7.1880 < 9.3444] w=0.5883 to align # Constraint # added constraint: constraint((T0322)S96.CB, (T0322)A126.CB) [> 4.3611 = 7.2685 < 9.4491] w=0.5822 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)V120.CB) [> 3.9221 = 6.5369 < 8.4980] w=0.5727 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)I132.CB) [> 4.1075 = 6.8458 < 8.8995] w=0.5716 to align # Constraint # added constraint: constraint((T0322)A72.CB, (T0322)E107.CB) [> 4.2910 = 7.1517 < 9.2972] w=0.5662 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)F138.CB) [> 4.1521 = 6.9202 < 8.9962] w=0.5604 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)K139.CB) [> 4.1048 = 6.8414 < 8.8938] w=0.5591 to align # Constraint # added constraint: constraint((T0322)G58.CA, (T0322)L100.CB) [> 4.0396 = 6.7327 < 8.7525] w=0.5553 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)F118.CB) [> 3.3526 = 5.5876 < 7.2639] w=0.5497 to align # Constraint # added constraint: constraint((T0322)T54.CB, (T0322)L100.CB) [> 3.5397 = 5.8995 < 7.6693] w=0.5456 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)K139.CB) [> 4.3077 = 7.1795 < 9.3333] w=0.5409 to align # Constraint # added constraint: constraint((T0322)E35.CB, (T0322)R44.CB) [> 4.1841 = 6.9734 < 9.0655] w=0.5218 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)G106.CA) [> 4.4958 = 7.4931 < 9.7410] w=0.5212 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)L100.CB) [> 4.1522 = 6.9203 < 8.9964] w=0.5187 to align # Constraint # added constraint: constraint((T0322)Q42.CB, (T0322)I76.CB) [> 4.0303 = 6.7171 < 8.7322] w=0.5158 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)L141.CB) [> 4.1691 = 6.9485 < 9.0330] w=0.5132 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)L141.CB) [> 3.6860 = 6.1434 < 7.9864] w=0.5090 to align # Constraint # added constraint: constraint((T0322)E50.CB, (T0322)G101.CA) [> 4.2366 = 7.0610 < 9.1793] w=0.5076 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)F138.CB) [> 3.2961 = 5.4934 < 7.1415] w=0.5051 to align # Constraint # added constraint: constraint((T0322)G41.CA, (T0322)L110.CB) [> 2.9902 = 4.9836 < 6.4787] w=0.4956 to align # Constraint # added constraint: constraint((T0322)C92.CB, (T0322)T135.CB) [> 4.0426 = 6.7377 < 8.7590] w=0.4891 to align # Constraint # added constraint: constraint((T0322)I111.CB, (T0322)T135.CB) [> 4.3812 = 7.3019 < 9.4925] w=0.4864 to align # Constraint # added constraint: constraint((T0322)A69.CB, (T0322)L90.CB) [> 4.3409 = 7.2348 < 9.4052] w=0.4839 to align # Constraint # added constraint: constraint((T0322)H36.CB, (T0322)L45.CB) [> 3.8786 = 6.4644 < 8.4037] w=0.4814 to align # Constraint # added constraint: constraint((T0322)W73.CB, (T0322)T87.CB) [> 4.2365 = 7.0609 < 9.1791] w=0.4788 to align # Constraint # added constraint: constraint((T0322)W103.CB, (T0322)G127.CA) [> 3.7644 = 6.2740 < 8.1562] w=0.4782 to align # Constraint # added constraint: constraint((T0322)D70.CB, (T0322)L90.CB) [> 3.9351 = 6.5585 < 8.5261] w=0.4688 to align # Constraint # added constraint: constraint((T0322)F34.CB, (T0322)A46.CB) [> 3.3250 = 5.5416 < 7.2041] w=0.4638 to align # Constraint # added constraint: constraint((T0322)H36.CB, (T0322)A46.CB) [> 3.2952 = 5.4920 < 7.1396] w=0.4613 to align # Constraint # added constraint: constraint((T0322)L33.CB, (T0322)L45.CB) [> 3.3128 = 5.5213 < 7.1777] w=0.4551 to align # Constraint # added constraint: constraint((T0322)L110.CB, (T0322)R121.CB) [> 4.6009 = 7.6682 < 9.9686] w=0.4494 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)L110.CB) [> 3.8951 = 6.4918 < 8.4394] w=0.4423 to align # Constraint # added constraint: constraint((T0322)I76.CB, (T0322)E109.CB) [> 4.1732 = 6.9553 < 9.0419] w=0.4267 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)D102.CB) [> 4.4863 = 7.4772 < 9.7204] w=0.4265 to align # Constraint # added constraint: constraint((T0322)L33.CB, (T0322)A46.CB) [> 4.2431 = 7.0718 < 9.1934] w=0.4248 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)C92.CB) [> 4.5754 = 7.6257 < 9.9134] w=0.4156 to align # Constraint # added constraint: constraint((T0322)Y83.CB, (T0322)A140.CB) [> 3.4886 = 5.8143 < 7.5585] w=0.3961 to align # Constraint # added constraint: constraint((T0322)H53.CB, (T0322)L100.CB) [> 4.1383 = 6.8972 < 8.9664] w=0.3804 to align # Constraint # added constraint: constraint((T0322)F34.CB, (T0322)F47.CB) [> 4.3100 = 7.1833 < 9.3383] w=0.3794 to align # Constraint # added constraint: constraint((T0322)L33.CB, (T0322)M71.CB) [> 3.4104 = 5.6841 < 7.3893] w=0.3743 to align # Constraint # added constraint: constraint((T0322)H36.CB, (T0322)E105.CB) [> 4.2567 = 7.0945 < 9.2228] w=0.3741 to align # Constraint # added constraint: constraint((T0322)S84.CB, (T0322)S142.CB) [> 3.9288 = 6.5480 < 8.5124] w=0.3572 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)E109.CB) [> 4.4127 = 7.3545 < 9.5609] w=0.3462 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)A140.CB) [> 3.9131 = 6.5219 < 8.4784] w=0.3369 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)M64.CB) [> 4.3579 = 7.2632 < 9.4421] w=0.3338 to align # Constraint # added constraint: constraint((T0322)Y83.CB, (T0322)L141.CB) [> 3.7765 = 6.2941 < 8.1824] w=0.3286 to align # Constraint # added constraint: constraint((T0322)G97.CA, (T0322)A126.CB) [> 4.3547 = 7.2578 < 9.4352] w=0.3276 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)E105.CB) [> 4.5648 = 7.6081 < 9.8905] w=0.3165 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)F118.CB) [> 3.9165 = 6.5275 < 8.4858] w=0.3113 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)I132.CB) [> 4.3346 = 7.2244 < 9.3917] w=0.3043 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)A98.CB) [> 4.4294 = 7.3823 < 9.5970] w=0.3004 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)I132.CB) [> 4.3602 = 7.2670 < 9.4471] w=0.2968 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)M64.CB) [> 4.3923 = 7.3205 < 9.5166] w=0.2962 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)T135.CB) [> 4.4667 = 7.4444 < 9.6778] w=0.2818 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)L110.CB) [> 4.3021 = 7.1702 < 9.3212] w=0.2709 to align # Constraint # added constraint: constraint((T0322)E109.CB, (T0322)R123.CB) [> 4.5710 = 7.6184 < 9.9039] w=0.2706 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)E113.CB) [> 3.7261 = 6.2102 < 8.0733] w=0.2529 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)R129.CB) [> 4.5913 = 7.6521 < 9.9477] w=0.2518 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)S67.CB) [> 4.4002 = 7.3337 < 9.5338] w=0.2428 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)G74.CA) [> 4.4224 = 7.3707 < 9.5819] w=0.2427 to align # Constraint # added constraint: constraint((T0322)L33.CB, (T0322)S67.CB) [> 4.4332 = 7.3888 < 9.6054] w=0.2326 to align # Constraint # added constraint: constraint((T0322)D70.CB, (T0322)G136.CA) [> 4.2449 = 7.0748 < 9.1972] w=0.2282 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)E107.CB) [> 4.6949 = 7.8248 < 10.1722] w=0.2216 to align # Constraint # added constraint: constraint((T0322)I30.CB, (T0322)M64.CB) [> 3.8642 = 6.4403 < 8.3724] w=0.2203 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)M71.CB) [> 3.6948 = 6.1580 < 8.0054] w=0.2203 to align # Constraint # added constraint: constraint((T0322)N59.CB, (T0322)L100.CB) [> 4.4344 = 7.3906 < 9.6078] w=0.2004 to align # Constraint # added constraint: constraint((T0322)I30.CB, (T0322)F68.CB) [> 4.0329 = 6.7215 < 8.7379] w=0.1979 to align # Constraint # added constraint: constraint((T0322)G101.CA, (T0322)A126.CB) [> 4.0986 = 6.8311 < 8.8804] w=0.1922 to align # Constraint # added constraint: constraint((T0322)F26.CB, (T0322)S67.CB) [> 4.2190 = 7.0316 < 9.1411] w=0.1922 to align # Constraint # added constraint: constraint((T0322)R75.CB, (T0322)G108.CA) [> 4.5293 = 7.5489 < 9.8135] w=0.1896 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)G106.CA) [> 3.9497 = 6.5828 < 8.5576] w=0.1881 to align # Constraint # added constraint: constraint((T0322)K81.CB, (T0322)F118.CB) [> 3.9353 = 6.5589 < 8.5266] w=0.1880 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)G134.CA) [> 4.4874 = 7.4790 < 9.7227] w=0.1861 to align # Constraint # added constraint: constraint((T0322)Q42.CB, (T0322)L79.CB) [> 4.3008 = 7.1680 < 9.3184] w=0.1821 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)L131.CB) [> 4.5262 = 7.5436 < 9.8067] w=0.1819 to align # Constraint # added constraint: constraint((T0322)F17.CB, (T0322)E35.CB) [> 3.2983 = 5.4972 < 7.1463] w=0.1720 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)N59.CB) [> 4.6801 = 7.8002 < 10.1403] w=0.1710 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)F138.CB) [> 4.4367 = 7.3944 < 9.6128] w=0.1692 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)F138.CB) [> 2.5578 = 4.2631 < 5.5420] w=0.1692 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)G136.CA) [> 4.5164 = 7.5274 < 9.7856] w=0.1692 to align # Constraint # added constraint: constraint((T0322)Y83.CB, (T0322)A143.CB) [> 4.0793 = 6.7989 < 8.8386] w=0.1690 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)T87.CB) [> 4.3979 = 7.3298 < 9.5288] w=0.1668 to align # Constraint # added constraint: constraint((T0322)A140.CB, (T0322)G149.CA) [> 3.3791 = 5.6318 < 7.3213] w=0.1627 to align # Constraint # added constraint: constraint((T0322)D93.CB, (T0322)T135.CB) [> 4.4767 = 7.4612 < 9.6996] w=0.1623 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)V137.CB) [> 4.3231 = 7.2051 < 9.3667] w=0.1591 to align # Constraint # added constraint: constraint((T0322)E35.CB, (T0322)A46.CB) [> 4.4424 = 7.4040 < 9.6252] w=0.1543 to align # Constraint # added constraint: constraint((T0322)F94.CB, (T0322)T133.CB) [> 3.2026 = 5.3377 < 6.9390] w=0.1522 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)A140.CB) [> 3.0655 = 5.1092 < 6.6419] w=0.1492 to align # Constraint # added constraint: constraint((T0322)I30.CB, (T0322)M71.CB) [> 4.2712 = 7.1187 < 9.2543] w=0.1473 to align # Constraint # added constraint: constraint((T0322)M116.CB, (T0322)G149.CA) [> 3.3147 = 5.5245 < 7.1819] w=0.1424 to align # Constraint # added constraint: constraint((T0322)M91.CB, (T0322)V137.CB) [> 4.5500 = 7.5833 < 9.8583] w=0.1415 to align # Constraint # added constraint: constraint((T0322)P32.CB, (T0322)R48.CB) [> 3.3913 = 5.6522 < 7.3479] w=0.1394 to align # Constraint # added constraint: constraint((T0322)P32.CB, (T0322)F47.CB) [> 3.4566 = 5.7610 < 7.4893] w=0.1394 to align # Constraint # added constraint: constraint((T0322)R28.CB, (T0322)M71.CB) [> 3.3602 = 5.6002 < 7.2803] w=0.1394 to align # Constraint # added constraint: constraint((T0322)P40.CB, (T0322)L110.CB) [> 4.0106 = 6.6842 < 8.6895] w=0.1314 to align # Constraint # added constraint: constraint((T0322)T54.CB, (T0322)M64.CB) [> 4.5534 = 7.5890 < 9.8657] w=0.1314 to align # Constraint # added constraint: constraint((T0322)F26.CB, (T0322)M71.CB) [> 4.4476 = 7.4127 < 9.6365] w=0.1293 to align # Constraint # added constraint: constraint((T0322)L20.CB, (T0322)L33.CB) [> 3.8897 = 6.4828 < 8.4277] w=0.1213 to align # Constraint # added constraint: constraint((T0322)D70.CB, (T0322)V137.CB) [> 3.8347 = 6.3911 < 8.3084] w=0.1189 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)G97.CA) [> 4.6632 = 7.7720 < 10.1035] w=0.1148 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)S78.CB) [> 4.4828 = 7.4713 < 9.7127] w=0.1111 to align # Constraint # added constraint: constraint((T0322)G63.CA, (T0322)C92.CB) [> 4.5626 = 7.6043 < 9.8856] w=0.1105 to align # Constraint # added constraint: constraint((T0322)D102.CB, (T0322)L131.CB) [> 4.4132 = 7.3554 < 9.5620] w=0.1091 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)V137.CB) [> 4.6251 = 7.7085 < 10.0210] w=0.1085 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)E105.CB) [> 4.0873 = 6.8122 < 8.8559] w=0.1036 to align # Constraint # added constraint: constraint((T0322)L95.CB, (T0322)G134.CA) [> 4.2921 = 7.1535 < 9.2995] w=0.1019 to align # Constraint # added constraint: constraint((T0322)R24.CB, (T0322)M71.CB) [> 4.2550 = 7.0917 < 9.2192] w=0.1012 to align # Constraint # added constraint: constraint((T0322)D115.CB, (T0322)G149.CA) [> 4.1892 = 6.9820 < 9.0766] w=0.1011 to align # Constraint # added constraint: constraint((T0322)K81.CB, (T0322)F138.CB) [> 3.8726 = 6.4544 < 8.3907] w=0.0930 to align # Constraint # added constraint: constraint((T0322)G31.CA, (T0322)M64.CB) [> 4.2734 = 7.1223 < 9.2590] w=0.0910 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)D102.CB) [> 4.3082 = 7.1803 < 9.3344] w=0.0910 to align # Constraint # added constraint: constraint((T0322)M64.CB, (T0322)V104.CB) [> 4.5374 = 7.5623 < 9.8310] w=0.0910 to align # Constraint # added constraint: constraint((T0322)F17.CB, (T0322)R75.CB) [> 4.1015 = 6.8358 < 8.8865] w=0.0910 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)T135.CB) [> 4.2306 = 7.0511 < 9.1664] w=0.0908 to align # Constraint # added constraint: constraint((T0322)R123.CB, (T0322)T135.CB) [> 4.5693 = 7.6154 < 9.9001] w=0.0908 to align # Constraint # added constraint: constraint((T0322)L20.CB, (T0322)S78.CB) [> 3.5726 = 5.9544 < 7.7407] w=0.0888 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)E128.CB) [> 4.6523 = 7.7538 < 10.0799] w=0.0844 to align # Constraint # added constraint: constraint((T0322)Y83.CB, (T0322)F118.CB) [> 4.2652 = 7.1087 < 9.2413] w=0.0823 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)P148.CB) [> 4.5505 = 7.5842 < 9.8595] w=0.0817 to align # Constraint # added constraint: constraint((T0322)I13.CB, (T0322)E38.CB) [> 4.0330 = 6.7217 < 8.7382] w=0.0809 to align # Constraint # added constraint: constraint((T0322)I111.CB, (T0322)G136.CA) [> 4.5473 = 7.5788 < 9.8525] w=0.0809 to align # Constraint # added constraint: constraint((T0322)S67.CB, (T0322)T87.CB) [> 4.3745 = 7.2909 < 9.4782] w=0.0743 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)W103.CB) [> 3.3805 = 5.6341 < 7.3243] w=0.0732 to align # Constraint # added constraint: constraint((T0322)R44.CB, (T0322)V104.CB) [> 4.3343 = 7.2238 < 9.3910] w=0.0732 to align # Constraint # added constraint: constraint((T0322)L45.CB, (T0322)W103.CB) [> 3.8829 = 6.4714 < 8.4129] w=0.0732 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)V120.CB) [> 4.0897 = 6.8161 < 8.8610] w=0.0728 to align # Constraint # added constraint: constraint((T0322)F34.CB, (T0322)R48.CB) [> 4.5167 = 7.5278 < 9.7861] w=0.0708 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)I124.CB) [> 4.0925 = 6.8208 < 8.8670] w=0.0701 to align # Constraint # added constraint: constraint((T0322)G16.CA, (T0322)E35.CB) [> 3.8453 = 6.4089 < 8.3315] w=0.0686 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)G136.CA) [> 4.0781 = 6.7968 < 8.8358] w=0.0633 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)I132.CB) [> 4.4407 = 7.4012 < 9.6216] w=0.0607 to align # Constraint # added constraint: constraint((T0322)G16.CA, (T0322)R75.CB) [> 4.1630 = 6.9383 < 9.0198] w=0.0607 to align # Constraint # added constraint: constraint((T0322)H52.CB, (T0322)M64.CB) [> 4.1464 = 6.9106 < 8.9838] w=0.0606 to align # Constraint # added constraint: constraint((T0322)T10.CB, (T0322)E35.CB) [> 3.4390 = 5.7316 < 7.4511] w=0.0585 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)G108.CA) [> 3.9895 = 6.6492 < 8.6439] w=0.0566 to align # Constraint # added constraint: constraint((T0322)Q29.CB, (T0322)M71.CB) [> 3.4971 = 5.8286 < 7.5771] w=0.0563 to align # Constraint # added constraint: constraint((T0322)S84.CB, (T0322)F138.CB) [> 3.9980 = 6.6633 < 8.6623] w=0.0558 to align # Constraint # added constraint: constraint((T0322)A43.CB, (T0322)Q80.CB) [> 4.2673 = 7.1121 < 9.2458] w=0.0535 to align # Constraint # added constraint: constraint((T0322)H61.CB, (T0322)L100.CB) [> 4.6084 = 7.6806 < 9.9848] w=0.0530 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)L151.CB) [> 4.0239 = 6.7066 < 8.7185] w=0.0515 to align # Constraint # added constraint: constraint((T0322)E114.CB, (T0322)L151.CB) [> 4.3749 = 7.2915 < 9.4789] w=0.0515 to align # Constraint # added constraint: constraint((T0322)I13.CB, (T0322)H36.CB) [> 4.3786 = 7.2977 < 9.4870] w=0.0506 to align # Constraint # added constraint: constraint((T0322)I13.CB, (T0322)R37.CB) [> 4.4296 = 7.3827 < 9.5975] w=0.0506 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)R121.CB) [> 4.5895 = 7.6491 < 9.9439] w=0.0506 to align # Constraint # added constraint: constraint((T0322)F47.CB, (T0322)L65.CB) [> 4.0227 = 6.7045 < 8.7158] w=0.0506 to align # Constraint # added constraint: constraint((T0322)Q19.CB, (T0322)R75.CB) [> 3.9391 = 6.5652 < 8.5347] w=0.0506 to align # Constraint # added constraint: constraint((T0322)I13.CB, (T0322)R75.CB) [> 3.9700 = 6.6167 < 8.6017] w=0.0506 to align # Constraint # added constraint: constraint((T0322)C60.CB, (T0322)A126.CB) [> 4.5960 = 7.6601 < 9.9581] w=0.0505 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)A152.CB) [> 3.6990 = 6.1650 < 8.0145] w=0.0505 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)T133.CB) [> 4.2791 = 7.1318 < 9.2714] w=0.0503 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)T133.CB) [> 4.4276 = 7.3794 < 9.5932] w=0.0503 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)R129.CB) [> 4.6394 = 7.7323 < 10.0520] w=0.0503 to align # Constraint # added constraint: constraint((T0322)I13.CB, (T0322)G31.CA) [> 3.6912 = 6.1520 < 7.9976] w=0.0462 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)F138.CB) [> 3.6536 = 6.0894 < 7.9162] w=0.0443 to align # Constraint # added constraint: constraint((T0322)M71.CB, (T0322)W85.CB) [> 4.0786 = 6.7977 < 8.8370] w=0.0440 to align # Constraint # added constraint: constraint((T0322)A11.CB, (T0322)L79.CB) [> 3.8585 = 6.4309 < 8.3602] w=0.0405 to align # Constraint # added constraint: constraint((T0322)Q19.CB, (T0322)S78.CB) [> 3.1200 = 5.2000 < 6.7600] w=0.0405 to align # Constraint # added constraint: constraint((T0322)L20.CB, (T0322)M64.CB) [> 4.3003 = 7.1671 < 9.3172] w=0.0404 to align # Constraint # added constraint: constraint((T0322)T10.CB, (T0322)E38.CB) [> 4.2564 = 7.0939 < 9.2221] w=0.0383 to align # Constraint # added constraint: constraint((T0322)Q29.CB, (T0322)M64.CB) [> 4.0077 = 6.6795 < 8.6833] w=0.0383 to align # Constraint # added constraint: constraint((T0322)I30.CB, (T0322)L45.CB) [> 3.7759 = 6.2932 < 8.1812] w=0.0383 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)V137.CB) [> 4.2409 = 7.0682 < 9.1886] w=0.0376 to align # Constraint # added constraint: constraint((T0322)G74.CA, (T0322)L90.CB) [> 4.2966 = 7.1610 < 9.3092] w=0.0329 to align # Constraint # added constraint: constraint((T0322)G74.CA, (T0322)V86.CB) [> 4.4614 = 7.4356 < 9.6663] w=0.0303 to align # Constraint # added constraint: constraint((T0322)G41.CA, (T0322)R121.CB) [> 4.6555 = 7.7592 < 10.0869] w=0.0303 to align # Constraint # added constraint: constraint((T0322)G74.CA, (T0322)S84.CB) [> 4.6746 = 7.7910 < 10.1283] w=0.0303 to align # Constraint # added constraint: constraint((T0322)V49.CB, (T0322)G58.CA) [> 4.1532 = 6.9220 < 8.9986] w=0.0303 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)M116.CB) [> 4.6730 = 7.7883 < 10.1248] w=0.0303 to align # Constraint # added constraint: constraint((T0322)S23.CB, (T0322)M71.CB) [> 4.2270 = 7.0450 < 9.1585] w=0.0303 to align # Constraint # added constraint: constraint((T0322)N21.CB, (T0322)M64.CB) [> 3.8059 = 6.3431 < 8.2460] w=0.0303 to align # Constraint # added constraint: constraint((T0322)A12.CB, (T0322)R75.CB) [> 3.2383 = 5.3971 < 7.0163] w=0.0303 to align # Constraint # added constraint: constraint((T0322)N55.CB, (T0322)M64.CB) [> 4.7041 = 7.8402 < 10.1923] w=0.0303 to align # Constraint # added constraint: constraint((T0322)H53.CB, (T0322)G63.CA) [> 4.7570 = 7.9284 < 10.3069] w=0.0303 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)L151.CB) [> 3.3250 = 5.5416 < 7.2042] w=0.0303 to align # Constraint # added constraint: constraint((T0322)L65.CB, (T0322)T130.CB) [> 3.4215 = 5.7024 < 7.4132] w=0.0302 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)G134.CA) [> 3.8622 = 6.4370 < 8.3681] w=0.0302 to align # Constraint # added constraint: constraint((T0322)M91.CB, (T0322)T133.CB) [> 3.5055 = 5.8424 < 7.5952] w=0.0302 to align # Constraint # added constraint: constraint((T0322)D93.CB, (T0322)T130.CB) [> 3.8145 = 6.3574 < 8.2647] w=0.0302 to align # Constraint # added constraint: constraint((T0322)D93.CB, (T0322)L131.CB) [> 3.1929 = 5.3214 < 6.9179] w=0.0302 to align # Constraint # added constraint: constraint((T0322)F94.CB, (T0322)T130.CB) [> 3.3324 = 5.5540 < 7.2202] w=0.0302 to align # Constraint # added constraint: constraint((T0322)I111.CB, (T0322)T133.CB) [> 3.7495 = 6.2492 < 8.1240] w=0.0302 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)T135.CB) [> 3.6495 = 6.0824 < 7.9071] w=0.0302 to align # Constraint # added constraint: constraint((T0322)L117.CB, (T0322)G136.CA) [> 3.3527 = 5.5878 < 7.2642] w=0.0302 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)T133.CB) [> 3.2790 = 5.4651 < 7.1046] w=0.0302 to align # Constraint # added constraint: constraint((T0322)T119.CB, (T0322)G134.CA) [> 3.7545 = 6.2576 < 8.1348] w=0.0302 to align # Constraint # added constraint: constraint((T0322)R121.CB, (T0322)I132.CB) [> 4.4344 = 7.3906 < 9.6078] w=0.0302 to align # Constraint # added constraint: constraint((T0322)G122.CA, (T0322)L131.CB) [> 3.5581 = 5.9301 < 7.7091] w=0.0302 to align # Constraint # added constraint: constraint((T0322)N59.CB, (T0322)S96.CB) [> 4.6999 = 7.8331 < 10.1830] w=0.0294 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)V137.CB) [> 3.2491 = 5.4151 < 7.0396] w=0.0278 to align # Constraint # added constraint: constraint((T0322)W85.CB, (T0322)G136.CA) [> 3.6056 = 6.0094 < 7.8122] w=0.0278 to align # Constraint # added constraint: constraint((T0322)L57.CB, (T0322)L100.CB) [> 4.1026 = 6.8377 < 8.8890] w=0.0277 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)S112.CB) [> 3.1149 = 5.1916 < 6.7490] w=0.0260 to align # Constraint # added constraint: constraint((T0322)H61.CB, (T0322)A98.CB) [> 4.7432 = 7.9053 < 10.2769] w=0.0229 to align # Constraint # added constraint: constraint((T0322)W103.CB, (T0322)W125.CB) [> 2.7546 = 4.5910 < 5.9683] w=0.0212 to align # Constraint # added constraint: constraint((T0322)G97.CA, (T0322)T130.CB) [> 4.4298 = 7.3829 < 9.5978] w=0.0212 to align # Constraint # added constraint: constraint((T0322)E105.CB, (T0322)G122.CA) [> 3.8826 = 6.4710 < 8.4123] w=0.0202 to align # Constraint # added constraint: constraint((T0322)R75.CB, (T0322)W85.CB) [> 3.8363 = 6.3939 < 8.3120] w=0.0202 to align # Constraint # added constraint: constraint((T0322)M71.CB, (T0322)F138.CB) [> 4.1953 = 6.9922 < 9.0899] w=0.0202 to align # Constraint # added constraint: constraint((T0322)M71.CB, (T0322)T87.CB) [> 4.3039 = 7.1732 < 9.3251] w=0.0202 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)V104.CB) [> 3.4237 = 5.7062 < 7.4181] w=0.0202 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)G122.CA) [> 3.4016 = 5.6693 < 7.3701] w=0.0202 to align # Constraint # added constraint: constraint((T0322)L5.CB, (T0322)M71.CB) [> 4.0451 = 6.7419 < 8.7645] w=0.0202 to align # Constraint # added constraint: constraint((T0322)G16.CA, (T0322)F26.CB) [> 4.7900 = 7.9833 < 10.3784] w=0.0202 to align # Constraint # added constraint: constraint((T0322)G16.CA, (T0322)S84.CB) [> 4.3887 = 7.3144 < 9.5088] w=0.0202 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)F68.CB) [> 4.4854 = 7.4757 < 9.7184] w=0.0202 to align # Constraint # added constraint: constraint((T0322)A11.CB, (T0322)L33.CB) [> 3.2919 = 5.4865 < 7.1325] w=0.0202 to align # Constraint # added constraint: constraint((T0322)A11.CB, (T0322)R75.CB) [> 4.4053 = 7.3421 < 9.5447] w=0.0202 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)F94.CB) [> 4.7913 = 7.9856 < 10.3812] w=0.0202 to align # Constraint # added constraint: constraint((T0322)E38.CB, (T0322)S82.CB) [> 4.6518 = 7.7530 < 10.0789] w=0.0202 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)Y153.CB) [> 3.5965 = 5.9941 < 7.7924] w=0.0202 to align # Constraint # added constraint: constraint((T0322)Q80.CB, (T0322)E156.CB) [> 3.1713 = 5.2854 < 6.8710] w=0.0202 to align # Constraint # added constraint: constraint((T0322)S23.CB, (T0322)L33.CB) [> 3.5024 = 5.8374 < 7.5886] w=0.0202 to align # Constraint # added constraint: constraint((T0322)L90.CB, (T0322)T133.CB) [> 4.4233 = 7.3723 < 9.5839] w=0.0202 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)T135.CB) [> 3.0241 = 5.0403 < 6.5523] w=0.0202 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)T135.CB) [> 4.1818 = 6.9697 < 9.0605] w=0.0202 to align # Constraint # added constraint: constraint((T0322)T87.CB, (T0322)G134.CA) [> 3.7096 = 6.1827 < 8.0375] w=0.0202 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)E107.CB) [> 4.0740 = 6.7900 < 8.8270] w=0.0201 to align # Constraint # added constraint: constraint((T0322)Q29.CB, (T0322)E107.CB) [> 3.0942 = 5.1570 < 6.7041] w=0.0201 to align # Constraint # added constraint: constraint((T0322)E107.CB, (T0322)T130.CB) [> 4.3222 = 7.2036 < 9.3647] w=0.0201 to align # Constraint # added constraint: constraint((T0322)R75.CB, (T0322)G122.CA) [> 3.8741 = 6.4569 < 8.3939] w=0.0201 to align # Constraint # added constraint: constraint((T0322)S23.CB, (T0322)R75.CB) [> 3.6828 = 6.1380 < 7.9794] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L20.CB, (T0322)E50.CB) [> 4.1862 = 6.9769 < 9.0700] w=0.0101 to align # Constraint # added constraint: constraint((T0322)H52.CB, (T0322)H61.CB) [> 3.1176 = 5.1961 < 6.7549] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L110.CB, (T0322)A157.CB) [> 3.2179 = 5.3632 < 6.9722] w=0.0101 to align # Constraint # added constraint: constraint((T0322)E113.CB, (T0322)A157.CB) [> 4.0095 = 6.6824 < 8.6872] w=0.0101 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)A157.CB) [> 4.5893 = 7.6489 < 9.9435] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L5.CB, (T0322)Q80.CB) [> 3.8071 = 6.3451 < 8.2487] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L5.CB, (T0322)R75.CB) [> 3.2056 = 5.3427 < 6.9455] w=0.0101 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)V137.CB) [> 4.6308 = 7.7180 < 10.0334] w=0.0101 to align # Constraint # added constraint: constraint((T0322)F26.CB, (T0322)R48.CB) [> 3.0480 = 5.0799 < 6.6039] w=0.0101 to align # Constraint # added constraint: constraint((T0322)M91.CB, (T0322)F138.CB) [> 4.7100 = 7.8500 < 10.2050] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)P148.CB) [> 4.6193 = 7.6989 < 10.0086] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)A152.CB) [> 3.7805 = 6.3008 < 8.1911] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)Y153.CB) [> 3.7911 = 6.3185 < 8.2141] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)G136.CA) [> 3.7841 = 6.3069 < 8.1989] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)L141.CB) [> 4.7024 = 7.8374 < 10.1886] w=0.0101 to align # Constraint # added constraint: constraint((T0322)R89.CB, (T0322)T133.CB) [> 4.7109 = 7.8516 < 10.2071] w=0.0101 to align # Constraint # added constraint: constraint((T0322)F118.CB, (T0322)Y153.CB) [> 3.8830 = 6.4716 < 8.4131] w=0.0101 to align # Constraint # added constraint: constraint((T0322)R24.CB, (T0322)L95.CB) [> 2.9722 = 4.9538 < 6.4399] w=0.0101 to align # Constraint # added constraint: constraint((T0322)F26.CB, (T0322)T130.CB) [> 3.1860 = 5.3099 < 6.9029] w=0.0101 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)R123.CB) [> 4.2295 = 7.0492 < 9.1639] w=0.0101 to align # Constraint # added constraint: constraint((T0322)G27.CA, (T0322)L131.CB) [> 4.7476 = 7.9126 < 10.2864] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L5.CB, (T0322)E107.CB) [> 4.5323 = 7.5539 < 9.8200] w=0.0101 to align # Constraint # added constraint: constraint((T0322)V88.CB, (T0322)P148.CB) [> 4.7462 = 7.9103 < 10.2833] w=0.0101 to align # Constraint # added constraint: constraint((T0322)S23.CB, (T0322)M64.CB) [> 4.2902 = 7.1502 < 9.2953] w=0.0101 to align # Constraint # added constraint: constraint((T0322)L20.CB, (T0322)T54.CB) [> 4.3188 = 7.1981 < 9.3575] w=0.0101 to align # Constraint # added constraint: constraint((T0322)I77.CB, (T0322)V86.CB) [> 4.7937 = 7.9894 < 10.3863] w=0.0101 to align # Constraint # added constraint: constraint((T0322)R75.CB, (T0322)E107.CB) [> 4.4442 = 7.4070 < 9.6291] w=0.0099 to align # Constraint # added constraint: constraint((T0322)V86.CB, (T0322)L117.CB) [> 4.1097 = 6.8494 < 8.9043] w=0.0099 to align # Constraint # added constraint: constraint((T0322)A11.CB, (T0322)E107.CB) [> 3.1122 = 5.1871 < 6.7432] w=0.0098 to align # Constraint # added constraint: constraint((T0322)R75.CB, (T0322)E105.CB) [> 4.1565 = 6.9275 < 9.0057] w=0.0079 to align # Constraint # added constraint: constraint((T0322)A8.CB, (T0322)V88.CB) [> 4.5687 = 7.6146 < 9.8989] w=0.0040 to align # Constraint # added constraint: constraint((T0322)M66.CB, (T0322)R89.CB) [> 4.4607 = 7.4345 < 9.6649] w=0.0040 to align # Constraint # added constraint: constraint((T0322)G62.CA, (T0322)M91.CB) [> 4.6770 = 7.7950 < 10.1335] w=0.0040 to align # Constraint # added constraint: constraint((T0322)I30.CB, (T0322)T119.CB) [> 4.4201 = 7.3668 < 9.5769] w=0.0040 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0322/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0322/decoys/ # ReadConformPDB reading from PDB file tr322.gromacs0.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr322.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr322.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr322.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-tr322-2fs2A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-tr322-2fs2A # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 79, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 337, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 103, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 79, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 337, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 103, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 127, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 356, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 430, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 Skipped atom 43, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 91, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 93, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 95, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 97, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 257, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 322, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 395, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0322)D7.CA and (T0322)E15.CA only 0.000 apart, marking (T0322)E15.CA as missing # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 127, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 244, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 356, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 430, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 Skipped atom 14, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 16, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 18, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 20, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 70, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 72, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 110, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 112, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 159, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 456, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 462, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0322)A143.O and (T0322)R144.N only 0.000 apart, marking (T0322)R144.N as missing # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 141 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0322 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 264 model score -0.6572 model score -0.6558 model score -0.6578 model score -0.6574 model score -0.6558 model score -0.6805 model score -0.6762 model score -0.6784 model score -0.6772 model score -0.6775 model score -0.6788 model score -0.6487 model score -0.6755 model score -0.6792 model score -0.6676 model score 0.7048 model score 0.7220 model score 0.6933 model score -0.6076 model score -0.5615 model score -0.5917 model score -0.5782 model score -0.3568 model score 0.0921 model score -0.0481 model score 1.2878 model score 0.9840 model score 1.2413 model score 1.2463 model score 1.3755 model score -0.6266 model score -0.4048 model score -0.5611 model score -0.5769 model score -0.6396 model score -0.6483 model score -0.6494 model score 0.5206 model score -0.6737 model score -0.6546 model score -0.6451 model score -0.4275 model score -0.4132 model score 1.2436 model score 1.2444 model score 1.2450 model score 1.2428 model score 1.2480 model score -0.5962 model score -0.6515 model score -0.6484 model score -0.6457 model score -0.6008 model score -0.6673 model score -0.5769 model score -0.6483 model score -0.6494 model score -0.6396 model score -0.5907 model score -0.6247 model score -0.2472 model score 0.1477 model score -0.4367 model score 1.2325 model score 1.2325 model score 1.2327 model score 1.2332 model score 1.2331 model score 1.2325 model score 1.2325 model score 1.2327 model score 1.2332 model score 1.2331 model score 1.9279 model score 2.1282 model score 2.4433 model score 1.8085 model score 1.9075 model score -0.5766 model score -0.3392 model score -0.3555 model score 0.8490 model score -0.3038 model score 1.2303 model score 1.2339 model score 1.2319 model score 1.2720 model score 1.2329 model score -0.6568 model score -0.6102 model score -0.6350 model score -0.6255 model score -0.5752 model score -0.6100 model score -0.6351 model score -0.6292 model score -0.6513 model score -0.5754 model score -0.6280 model score -0.6406 model score -0.6406 model score -0.5295 model score 0.4572 model score -0.5712 model score 1.7349 model score 2.0342 model score -0.6134 model score -0.6438 model score -0.2716 model score -0.5607 model score -0.5640 model score 1.2836 model score -0.2544 model score -0.6436 model score -0.5713 model score -0.6498 model score -0.5723 model score -0.6365 model score -0.5937 model score -0.6585 model score -0.5723 model score -0.5876 model score -0.5321 model score -0.5588 model score -0.5761 model score -0.5674 model score -0.5607 model score -0.6428 model score -0.5987 model score -0.5808 model score -0.5919 model score -0.5787 model score -0.5995 model score -0.5871 model score -0.5791 model score -0.5680 model score -0.5725 model score -0.5551 model score -0.6568 model score -0.6493 model score -0.6367 model score -0.6216 model score -0.6488 model score -0.5546 model score -0.6140 model score -0.6571 model score -0.6579 model score -0.6131 model score -0.6358 model score -0.6489 model score -0.6568 model score -0.6609 model score -0.6259 model score -0.5415 model score -0.6522 model score -0.6428 model score -0.6194 model score -0.6458 model score -0.5778 model score -0.5110 model score -0.4027 model score -0.5624 model score -0.5624 model score -0.5672 model score -0.5592 model score -0.4053 model score -0.6319 model score -0.6319 model score -0.6326 model score -0.5540 model score -0.4946 model score -0.5037 model score -0.4886 model score -0.6164 model score -0.5082 model score -0.4743 model score -0.5749 model score -0.6583 model score -0.6415 model score 1.2346 model score 1.2346 model score 1.2351 model score 1.2350 model score 1.2337 model score 1.2339 model score 1.2336 model score 1.2334 model score 1.2340 model score 1.2343 model score -0.5804 model score -0.4121 model score -0.5184 model score -0.6611 model score -0.6241 model score -0.6428 model score -0.5842 model score -0.4088 model score -0.3224 model score -0.4084 model score -0.6590 model score -0.5578 model score -0.5353 model score -0.1886 model score -0.5010 model score -0.6428 model score -0.3224 model score -0.5776 model score -0.3973 model score -0.5787 model score 1.2350 model score 1.2339 model score 1.2337 model score 1.2332 model score 1.2339 model score -0.6822 model score 1.2350 model score 1.2339 model score 1.2337 model score 1.2332 model score -0.6458 model score -0.6763 model score -0.6356 model score -0.6578 model score -0.6476 model score -0.5925 model score -0.6214 model score 1.2339 model score 1.2325 model score 1.2314 model score 1.2313 model score 1.2329 model score 1.2340 model score 1.2316 model score 1.2319 model score 1.2337 model score 1.2720 model score -0.6315 model score -0.6380 model score -0.5789 model score -0.6470 model score -0.5869 model score 1.4027 model score 1.7805 model score 1.8482 model score 2.0753 model score 1.8340 model score -0.6694 model score -0.6039 model score -0.6162 model score -0.6291 model score -0.3803 model score -0.5320 model score -0.5431 model score -0.5185 model score -0.5282 model score -0.5498 model score -0.6309 model score -0.6196 model score -0.5786 model score -0.6505 model score -0.6523 model score -0.4025 model score -0.6338 model score -0.6079 weight: 0.9928 eval: -0.6572 min: -0.6822 max: 2.4433 weight: 0.9924 eval: -0.6558 min: -0.6822 max: 2.4433 weight: 0.9930 eval: -0.6578 min: -0.6822 max: 2.4433 weight: 0.9929 eval: -0.6574 min: -0.6822 max: 2.4433 weight: 0.9924 eval: -0.6558 min: -0.6822 max: 2.4433 weight: 0.9995 eval: -0.6805 min: -0.6822 max: 2.4433 weight: 0.9983 eval: -0.6762 min: -0.6822 max: 2.4433 weight: 0.9989 eval: -0.6784 min: -0.6822 max: 2.4433 weight: 0.9986 eval: -0.6772 min: -0.6822 max: 2.4433 weight: 0.9987 eval: -0.6775 min: -0.6822 max: 2.4433 weight: 0.9990 eval: -0.6788 min: -0.6822 max: 2.4433 weight: 0.9904 eval: -0.6487 min: -0.6822 max: 2.4433 weight: 0.9981 eval: -0.6755 min: -0.6822 max: 2.4433 weight: 0.9991 eval: -0.6792 min: -0.6822 max: 2.4433 weight: 0.9958 eval: -0.6676 min: -0.6822 max: 2.4433 weight: 0.6006 eval: 0.7048 min: -0.6822 max: 2.4433 weight: 0.5957 eval: 0.7220 min: -0.6822 max: 2.4433 weight: 0.6039 eval: 0.6933 min: -0.6822 max: 2.4433 weight: 0.9785 eval: -0.6076 min: -0.6822 max: 2.4433 weight: 0.9652 eval: -0.5615 min: -0.6822 max: 2.4433 weight: 0.9739 eval: -0.5917 min: -0.6822 max: 2.4433 weight: 0.9701 eval: -0.5782 min: -0.6822 max: 2.4433 weight: 0.9063 eval: -0.3568 min: -0.6822 max: 2.4433 weight: 0.7770 eval: 0.0921 min: -0.6822 max: 2.4433 weight: 0.8174 eval: -0.0481 min: -0.6822 max: 2.4433 weight: 0.4327 eval: 1.2878 min: -0.6822 max: 2.4433 weight: 0.5202 eval: 0.9840 min: -0.6822 max: 2.4433 weight: 0.4461 eval: 1.2413 min: -0.6822 max: 2.4433 weight: 0.4447 eval: 1.2463 min: -0.6822 max: 2.4433 weight: 0.4075 eval: 1.3755 min: -0.6822 max: 2.4433 weight: 0.9840 eval: -0.6266 min: -0.6822 max: 2.4433 weight: 0.9201 eval: -0.4048 min: -0.6822 max: 2.4433 weight: 0.9651 eval: -0.5611 min: -0.6822 max: 2.4433 weight: 0.9697 eval: -0.5769 min: -0.6822 max: 2.4433 weight: 0.9877 eval: -0.6396 min: -0.6822 max: 2.4433 weight: 0.9903 eval: -0.6483 min: -0.6822 max: 2.4433 weight: 0.9906 eval: -0.6494 min: -0.6822 max: 2.4433 weight: 0.6536 eval: 0.5206 min: -0.6822 max: 2.4433 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min: -0.6822 max: 2.4433 weight: 0.2714 eval: 1.8482 min: -0.6822 max: 2.4433 weight: 0.2059 eval: 2.0753 min: -0.6822 max: 2.4433 weight: 0.2754 eval: 1.8340 min: -0.6822 max: 2.4433 weight: 0.9963 eval: -0.6694 min: -0.6822 max: 2.4433 weight: 0.9775 eval: -0.6039 min: -0.6822 max: 2.4433 weight: 0.9810 eval: -0.6162 min: -0.6822 max: 2.4433 weight: 0.9847 eval: -0.6291 min: -0.6822 max: 2.4433 weight: 0.9131 eval: -0.3803 min: -0.6822 max: 2.4433 weight: 0.9568 eval: -0.5320 min: -0.6822 max: 2.4433 weight: 0.9600 eval: -0.5431 min: -0.6822 max: 2.4433 weight: 0.9529 eval: -0.5185 min: -0.6822 max: 2.4433 weight: 0.9557 eval: -0.5282 min: -0.6822 max: 2.4433 weight: 0.9619 eval: -0.5498 min: -0.6822 max: 2.4433 weight: 0.9852 eval: -0.6309 min: -0.6822 max: 2.4433 weight: 0.9820 eval: -0.6196 min: -0.6822 max: 2.4433 weight: 0.9702 eval: -0.5786 min: -0.6822 max: 2.4433 weight: 0.9909 eval: -0.6505 min: -0.6822 max: 2.4433 weight: 0.9914 eval: -0.6523 min: -0.6822 max: 2.4433 weight: 0.9195 eval: -0.4025 min: -0.6822 max: 2.4433 weight: 0.9861 eval: -0.6338 min: -0.6822 max: 2.4433 weight: 0.9786 eval: -0.6079 min: -0.6822 max: 2.4433 Adding 4252 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -282.6618, CN propb: -282.6618 weights: 0.4169 constraints: 436 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 436 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 436 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 3816 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 3816 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4252 # command: