# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0318/ # command:# Making conformation for sequence T0318 numbered 1 through 491 Created new target T0318 from T0318.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0318/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0318//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0318/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0318//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0318/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0318/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0318/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x13A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x13A expands to /projects/compbio/data/pdb/1x13.pdb.gz 1x13A:# T0318 read from 1x13A/merged-good-all-a2m # 1x13A read from 1x13A/merged-good-all-a2m # adding 1x13A to template set # found chain 1x13A in template set T0318 13 :VGDGLTSLIIVGKKSV 1x13A 1083 :LNPGTTLVSFIWPAQN # choosing archetypes in rotamer library T0318 39 :KEVAQKFVTD 1x13A 1099 :PELMQKLAER T0318 66 :PLHYELAHLITVPDASSRGNTPTNAHSIY 1x13A 1109 :NVTVMAMDSVPRISRAQSLDALSSMANIA T0318 120 :VLSHVAAIARTFCKFSMKTSGIRELNVNIDVVC 1x13A 1138 :GYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV T0318 153 :DK 1x13A 1173 :AG T0318 164 :TDLSE 1x13A 1175 :VAGLA T0318 193 :AVKVGNATGSKITVIR 1x13A 1180 :AIGAANSLGAIVRAFD T0318 209 :GEELLKAGFGGI 1x13A 1201 :KEQVQSMGAEFL T0318 246 :HIALV 1x13A 1250 :DIIVT T0318 261 :LQIKTKTGMPNMKRDM 1x13A 1255 :TALIPGKPAPKLITRE T0318 290 :VKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTV 1x13A 1271 :MVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKV T0318 330 :INNTDAEGRL 1x13A 1310 :IGYTDLPGRL T0318 340 :ILADGVFYAKE 1x13A 1326 :LYGTNLVNLLK Number of specific fragments extracted= 13 number of extra gaps= 0 total=13 Number of alignments=1 # 1x13A read from 1x13A/merged-good-all-a2m # found chain 1x13A in template set Warning: unaligning (T0318)V240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x13A)G1223 T0318 36 :GKFKEVAQKFVTDGDSWNSMI 1x13A 1048 :KAFVQAGAEIVEGNSVWQSEI T0318 57 :SRIPASGRHPLHYELAHL 1x13A 1081 :ALLNPGTTLVSFIWPAQN T0318 87 :PTNAHSIYKELKP 1x13A 1099 :PELMQKLAERNVT T0318 100 :INYPEDTKNVHFVLF 1x13A 1118 :VPRISRAQSLDALSS T0318 116 :EYPDVLSHVAAIARTF 1x13A 1133 :MANIAGYRAIVEAAHE T0318 132 :CKFSMK 1x13A 1150 :GRFFTG T0318 138 :TSGIRELNVNIDVVCDKL 1x13A 1158 :TAAGKVPPAKVMVIGAGV T0318 165 :DLSE 1x13A 1176 :AGLA T0318 193 :AVKVGNATGSKITVIR 1x13A 1180 :AIGAANSLGAIVRAFD T0318 209 :GEELLKAGFGGI 1x13A 1201 :KEQVQSMGAEFL T0318 241 :P 1x13A 1224 :D T0318 246 :HIALV 1x13A 1250 :DIIVT T0318 261 :LQIKTKTGMPNMKR 1x13A 1255 :TALIPGKPAPKLIT T0318 275 :D 1x13A 1270 :E T0318 290 :VKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTV 1x13A 1271 :MVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKV T0318 330 :INNTDAEGR 1x13A 1310 :IGYTDLPGR Number of specific fragments extracted= 16 number of extra gaps= 0 total=29 Number of alignments=2 # 1x13A read from 1x13A/merged-good-all-a2m # found chain 1x13A in template set T0318 59 :IPASGRHPLHYELAHL 1x13A 1083 :LNPGTTLVSFIWPAQN T0318 88 :TNAHSIYKELKPI 1x13A 1099 :PELMQKLAERNVT T0318 101 :NYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSM 1x13A 1119 :PRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFT T0318 137 :KTSGIRELNVNIDVVCD 1x13A 1158 :TAAGKVPPAKVMVIGAG T0318 155 :L 1x13A 1175 :V T0318 165 :DLS 1x13A 1176 :AGL T0318 192 :EAVKVGNATGSKITVIR 1x13A 1179 :AAIGAANSLGAIVRAFD T0318 209 :GEELLKAGFGGI 1x13A 1201 :KEQVQSMGAEFL T0318 229 :TPPAFVVLSHEVPGS 1x13A 1248 :EVDIIVTTALIPGKP T0318 244 :TEHI 1x13A 1264 :PKLI T0318 265 :TKTGMPNMKRD 1x13A 1268 :TREMVDSMKAG T0318 299 :HACLCIVENNVSPIANKPDDIIKMLSGKTV 1x13A 1280 :VIVDLAAQNGGNCEYTVPGEIFTTENGVKV T0318 330 :INNTDAEGRL 1x13A 1310 :IGYTDLPGRL Number of specific fragments extracted= 13 number of extra gaps= 0 total=42 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u9yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1u9yA expands to /projects/compbio/data/pdb/1u9y.pdb.gz 1u9yA:# T0318 read from 1u9yA/merged-good-all-a2m # 1u9yA read from 1u9yA/merged-good-all-a2m # adding 1u9yA to template set # found chain 1u9yA in template set Warning: unaligning (T0318)R208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u9yA)I196 Warning: unaligning (T0318)H238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u9yA)I196 T0318 19 :SLIIVGK 1u9yA 2 :IVVSGSQ T0318 38 :FKEVAQKFVTDGDSWNSMISRIPASGRH 1u9yA 9 :SQNLAFKVAKLLNTKLTRVEYKRFPDNE T0318 66 :PLHYELAHLITV 1u9yA 46 :NDDEAVIINTQK T0318 82 :SRGNTPTNAHSIYKELKPINYPEDTKNVHFVL 1u9yA 58 :NQNDAIVETILLCDALRDEGVKKITLVAPYLA T0318 117 :YPDVLSHVAAIARTFCK 1u9yA 102 :AISIRALAKIYSNIVDK T0318 134 :FSMKTS 1u9yA 126 :ETHIKD T0318 143 :ELNVNIDVVC 1u9yA 132 :FFTIPFIYGD T0318 166 :LSESVRETARLIDTP 1u9yA 143 :VPKLAEYVKDKLNDP T0318 182 :NILTTDALVDEAVKVG 1u9yA 162 :PDKGALEFAKTASKIL T0318 201 :GSKITVI 1u9yA 178 :NAEYDYL T0318 239 :EVPG 1u9yA 197 :APKT T0318 243 :STEHIALVGKGV 1u9yA 204 :KDRDVFIVDDII T0318 266 :KT 1u9yA 217 :TG T0318 280 :AGMLEAYSALVKHGFS 1u9yA 219 :GTMATAVKLLKEQGAK T0318 298 :LHACLCI 1u9yA 236 :IIAACVH T0318 307 :NNVSPI 1u9yA 243 :PVLIGD T0318 344 :GVFYAKET 1u9yA 249 :ALNKLYSA T0318 353 :KATTIFDMA 1u9yA 257 :GVEEVVGTD Number of specific fragments extracted= 18 number of extra gaps= 0 total=60 Number of alignments=4 # 1u9yA read from 1u9yA/merged-good-all-a2m # found chain 1u9yA in template set Warning: unaligning (T0318)R208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u9yA)I196 Warning: unaligning (T0318)H238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u9yA)I196 T0318 33 :TFEGKFKEVAQKF 1u9yA 12 :LAFKVAKLLNTKL T0318 46 :VTDGDSWNSMISRIPASGRHPLHYE 1u9yA 32 :FPDNEIYVRIVDEINDDEAVIINTQ T0318 75 :ITVPDASSRGNTPTNAHSIYKELKP 1u9yA 57 :KNQNDAIVETILLCDALRDEGVKKI T0318 100 :INYPEDTKNVHFVLFA 1u9yA 85 :APYLAYARQDKKFNPG T0318 116 :EYPDVLSHVAAIARTF 1u9yA 104 :SIRALAKIYSNIVDKL T0318 134 :FSMKTSGIRELNVNIDVV 1u9yA 125 :HETHIKDFFTIPFIYGDA T0318 170 :VRETARLIDTPANIL 1u9yA 143 :VPKLAEYVKDKLNDP T0318 185 :TTDALVDEAVKVG 1u9yA 165 :GALEFAKTASKIL T0318 201 :GSKITVI 1u9yA 178 :NAEYDYL T0318 239 :EVPG 1u9yA 197 :APKT T0318 243 :STEHIALVGKGV 1u9yA 204 :KDRDVFIVDDII T0318 266 :KT 1u9yA 217 :TG T0318 280 :AGMLEAYSALVKHGFS 1u9yA 219 :GTMATAVKLLKEQGAK T0318 298 :LHACLCI 1u9yA 236 :IIAACVH T0318 307 :NNVSPI 1u9yA 243 :PVLIGD T0318 344 :GVFYAKET 1u9yA 249 :ALNKLYSA T0318 353 :KATTIFDMAT 1u9yA 257 :GVEEVVGTDT Number of specific fragments extracted= 17 number of extra gaps= 0 total=77 Number of alignments=5 # 1u9yA read from 1u9yA/merged-good-all-a2m # found chain 1u9yA in template set Warning: unaligning (T0318)R208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1u9yA)I196 Warning: unaligning (T0318)H238 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1u9yA)I196 T0318 43 :QKFVTDGDSWNSMISRIPASGRHPLHY 1u9yA 29 :YKRFPDNEIYVRIVDEINDDEAVIINT T0318 74 :LITVPDASSRGNTPTNAHSIYKELKP 1u9yA 56 :QKNQNDAIVETILLCDALRDEGVKKI T0318 100 :INYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCK 1u9yA 85 :APYLAYARQDKKFNPGEAISIRALAKIYSNIVDK T0318 134 :FSMKTSGIRELNVNIDVV 1u9yA 125 :HETHIKDFFTIPFIYGDA T0318 170 :VRETARLIDTPANIL 1u9yA 143 :VPKLAEYVKDKLNDP T0318 185 :TTDALVDEAVKVG 1u9yA 165 :GALEFAKTASKIL T0318 201 :GSKITVI 1u9yA 178 :NAEYDYL T0318 239 :EVPGS 1u9yA 197 :APKTL T0318 244 :TEHIALVGKGV 1u9yA 205 :DRDVFIVDDII T0318 266 :KT 1u9yA 217 :TG T0318 280 :AGMLEAYSALVKHGFS 1u9yA 219 :GTMATAVKLLKEQGAK T0318 298 :LHACLCI 1u9yA 236 :IIAACVH T0318 307 :NNVSPI 1u9yA 243 :PVLIGD T0318 344 :GVFYA 1u9yA 249 :ALNKL T0318 350 :ETLKATTIFDM 1u9yA 254 :YSAGVEEVVGT Number of specific fragments extracted= 15 number of extra gaps= 0 total=92 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ysjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ysjA expands to /projects/compbio/data/pdb/1ysj.pdb.gz 1ysjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 282, because occupancy 0.5 <= existing 0.500 in 1ysjA Skipped atom 284, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 286, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 288, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 290, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 292, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 294, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 296, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 298, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 300, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 320, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 322, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 324, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 699, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 701, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1676, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1680, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1682, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1684, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1686, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1688, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1690, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1692, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2167, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2171, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 1ysjA Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 1ysjA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0318 read from 1ysjA/merged-good-all-a2m # 1ysjA read from 1ysjA/merged-good-all-a2m # adding 1ysjA to template set # found chain 1ysjA in template set Warning: unaligning (T0318)T156 because first residue in template chain is (1ysjA)A2 Warning: unaligning (T0318)M360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ysjA)H158 Warning: unaligning (T0318)A361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ysjA)H158 T0318 157 :NEDAV 1ysjA 3 :DKAFH T0318 167 :SESVRETARLIDTPANILTTDALVDEAVKVGNATGSKI 1ysjA 8 :TRLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQIEI T0318 227 :GPTPPAFVVLSH 1ysjA 50 :QLKTGVIAEIKG T0318 242 :GSTEHIAL 1ysjA 62 :REDGPVIA T0318 254 :VVYDTGGLQIKTKTGMPNMKR 1ysjA 70 :IRADIDALPIQEQTNLPFASK T0318 275 :DMGG 1ysjA 96 :HACG T0318 279 :AAGMLEAYSALVK 1ysjA 104 :TASIIGTAMLLNQ T0318 315 :KPDDI 1ysjA 117 :RRAEL T0318 324 :SG 1ysjA 122 :KG T0318 327 :TVEINNTDAEG 1ysjA 124 :TVRFIFQPAEE T0318 342 :ADGVFYAKET 1ysjA 136 :AAGARKVLEA T0318 353 :KATTIFD 1ysjA 150 :GVSAIFG T0318 362 :T 1ysjA 159 :N Number of specific fragments extracted= 13 number of extra gaps= 1 total=105 Number of alignments=7 # 1ysjA read from 1ysjA/merged-good-all-a2m # found chain 1ysjA in template set Warning: unaligning (T0318)T156 because first residue in template chain is (1ysjA)A2 Warning: unaligning (T0318)M360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ysjA)H158 Warning: unaligning (T0318)A361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ysjA)H158 T0318 157 :NEDAV 1ysjA 3 :DKAFH T0318 167 :SESVRETARLIDTPANILTTDALVDEAVKVGNATGSKI 1ysjA 8 :TRLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQIEI T0318 227 :GPTPPAFVVLSH 1ysjA 50 :QLKTGVIAEIKG T0318 242 :GSTEHIAL 1ysjA 62 :REDGPVIA T0318 254 :VVYDTGGLQIKTKTGMPNMKR 1ysjA 70 :IRADIDALPIQEQTNLPFASK T0318 275 :DMGG 1ysjA 96 :HACG T0318 279 :AAGMLEAYSALVK 1ysjA 104 :TASIIGTAMLLNQ T0318 315 :KPDDI 1ysjA 117 :RRAEL T0318 324 :SG 1ysjA 122 :KG T0318 327 :TVEINNTDAE 1ysjA 124 :TVRFIFQPAE T0318 344 :GVFYAKET 1ysjA 138 :GARKVLEA T0318 352 :LKATTIFD 1ysjA 149 :NGVSAIFG T0318 362 :T 1ysjA 159 :N Number of specific fragments extracted= 13 number of extra gaps= 1 total=118 Number of alignments=8 # 1ysjA read from 1ysjA/merged-good-all-a2m # found chain 1ysjA in template set Warning: unaligning (T0318)L155 because first residue in template chain is (1ysjA)A2 Warning: unaligning (T0318)M360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ysjA)H158 Warning: unaligning (T0318)A361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ysjA)H158 T0318 156 :TNEDA 1ysjA 3 :DKAFH T0318 167 :SESVRETARLIDTPANILTTDALVDEAVKVGNATGSKI 1ysjA 8 :TRLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQIEI T0318 227 :GPTPPAFVVLSH 1ysjA 50 :QLKTGVIAEIKG T0318 241 :PGS 1ysjA 62 :RED T0318 245 :EHIAL 1ysjA 65 :GPVIA T0318 254 :VVYDTGGLQIKTKTGMPNMKR 1ysjA 70 :IRADIDALPIQEQTNLPFASK T0318 275 :DMGG 1ysjA 96 :HACG T0318 279 :AAGMLEAYSALVK 1ysjA 104 :TASIIGTAMLLNQ T0318 315 :KPDDI 1ysjA 117 :RRAEL T0318 324 :S 1ysjA 122 :K T0318 326 :KTVEINNTDAE 1ysjA 123 :GTVRFIFQPAE T0318 344 :GVFYAKET 1ysjA 138 :GARKVLEA T0318 352 :LKATTIFD 1ysjA 149 :NGVSAIFG T0318 362 :TLTG 1ysjA 159 :NKPD T0318 383 :EQLENEIIKA 1ysjA 203 :IAAAGQIISG Number of specific fragments extracted= 15 number of extra gaps= 1 total=133 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ewbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0318/2ewbA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0318/2ewbA/merged-good-all-a2m.gz for input Trying 2ewbA/merged-good-all-a2m Error: Couldn't open file 2ewbA/merged-good-all-a2m or 2ewbA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tkjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tkjA expands to /projects/compbio/data/pdb/1tkj.pdb.gz 1tkjA:Skipped atom 14, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 16, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 18, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 20, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 22, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 24, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 26, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 28, because occupancy 0.470 <= existing 0.530 in 1tkjA Skipped atom 77, because occupancy 0.380 <= existing 0.620 in 1tkjA Skipped atom 79, because occupancy 0.380 <= existing 0.620 in 1tkjA Skipped atom 81, because occupancy 0.380 <= existing 0.620 in 1tkjA Skipped atom 83, because occupancy 0.380 <= existing 0.620 in 1tkjA Skipped atom 85, because occupancy 0.380 <= existing 0.620 in 1tkjA Skipped atom 236, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 238, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 240, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 242, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 244, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 246, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 248, because occupancy 0.440 <= existing 0.560 in 1tkjA Skipped atom 625, because occupancy 0.200 <= existing 0.800 in 1tkjA Skipped atom 627, because occupancy 0.200 <= existing 0.800 in 1tkjA Skipped atom 629, because occupancy 0.200 <= existing 0.800 in 1tkjA Skipped atom 631, because occupancy 0.200 <= existing 0.800 in 1tkjA Skipped atom 696, because occupancy 0.170 <= existing 0.830 in 1tkjA Skipped atom 698, because occupancy 0.170 <= existing 0.830 in 1tkjA Skipped atom 841, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 843, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 845, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 847, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 849, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 851, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 853, because occupancy 0.410 <= existing 0.590 in 1tkjA Skipped atom 1121, because occupancy 0.460 <= existing 0.540 in 1tkjA Skipped atom 1123, because occupancy 0.460 <= existing 0.540 in 1tkjA Skipped atom 1134, because occupancy 0.320 <= existing 0.680 in 1tkjA Skipped atom 1136, because occupancy 0.320 <= existing 0.680 in 1tkjA Skipped atom 1138, because occupancy 0.320 <= existing 0.680 in 1tkjA Skipped atom 1140, because occupancy 0.320 <= existing 0.680 in 1tkjA Skipped atom 1146, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1148, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1150, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1152, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1154, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1156, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1158, because occupancy 0.420 <= existing 0.580 in 1tkjA Skipped atom 1394, because occupancy 0.450 <= existing 0.550 in 1tkjA Skipped atom 1396, because occupancy 0.450 <= existing 0.550 in 1tkjA Skipped atom 1398, because occupancy 0.450 <= existing 0.550 in 1tkjA Skipped atom 1400, because occupancy 0.450 <= existing 0.550 in 1tkjA Skipped atom 1402, because occupancy 0.450 <= existing 0.550 in 1tkjA Skipped atom 1408, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1410, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1412, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1429, because occupancy 0.290 <= existing 0.710 in 1tkjA Skipped atom 1431, because occupancy 0.290 <= existing 0.710 in 1tkjA Skipped atom 1433, because occupancy 0.290 <= existing 0.710 in 1tkjA Skipped atom 1435, because occupancy 0.290 <= existing 0.710 in 1tkjA Skipped atom 1437, because occupancy 0.290 <= existing 0.710 in 1tkjA Skipped atom 1491, because occupancy 0.400 <= existing 0.600 in 1tkjA Skipped atom 1493, because occupancy 0.400 <= existing 0.600 in 1tkjA Skipped atom 1495, because occupancy 0.400 <= existing 0.600 in 1tkjA Skipped atom 1497, because occupancy 0.400 <= existing 0.600 in 1tkjA Skipped atom 1557, because occupancy 0.160 <= existing 0.840 in 1tkjA Skipped atom 1559, because occupancy 0.160 <= existing 0.840 in 1tkjA Skipped atom 1561, because occupancy 0.160 <= existing 0.840 in 1tkjA Skipped atom 1563, because occupancy 0.160 <= existing 0.840 in 1tkjA Skipped atom 1565, because occupancy 0.160 <= existing 0.840 in 1tkjA Skipped atom 1750, because occupancy 0.370 <= existing 0.630 in 1tkjA Skipped atom 1752, because occupancy 0.370 <= existing 0.630 in 1tkjA Skipped atom 1754, because occupancy 0.370 <= existing 0.630 in 1tkjA Skipped atom 1799, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1801, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1803, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1805, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1807, because occupancy 0.300 <= existing 0.700 in 1tkjA Skipped atom 1938, because occupancy 0.290 <= existing 0.700 in 1tkjA Skipped atom 1940, because occupancy 0.290 <= existing 0.700 in 1tkjA Skipped atom 1974, because occupancy 0.480 <= existing 0.520 in 1tkjA Skipped atom 1976, because occupancy 0.480 <= existing 0.520 in 1tkjA Skipped atom 2127, because occupancy 0.250 <= existing 0.750 in 1tkjA Skipped atom 2129, because occupancy 0.250 <= existing 0.750 in 1tkjA Skipped atom 2131, because occupancy 0.250 <= existing 0.750 in 1tkjA # T0318 read from 1tkjA/merged-good-all-a2m # 1tkjA read from 1tkjA/merged-good-all-a2m # adding 1tkjA to template set # found chain 1tkjA in template set Warning: unaligning (T0318)A232 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1tkjA)N66 Warning: unaligning (T0318)F233 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1tkjA)N66 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tkjA)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)G168 Warning: unaligning (T0318)P407 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)G201 Warning: unaligning (T0318)D408 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)G201 T0318 153 :DKLTNEDAVF 1tkjA 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1tkjA 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1tkjA 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPP 1tkjA 58 :TSGGATG T0318 234 :VVLSH 1tkjA 67 :LIANW T0318 240 :VPG 1tkjA 72 :PGG T0318 244 :TEHIALVGKGVV 1tkjA 76 :PNKVLMAGAHLD T0318 265 :TKTGMPNMK 1tkjA 88 :SVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tkjA 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tkjA 121 :KHLRFAWWGAEEL T0318 317 :DD 1tkjA 134 :GL T0318 343 :DGVFYAKETLK 1tkjA 136 :IGSKFYVNNLP T0318 354 :ATTIFDMATL 1tkjA 153 :LAGYLNFDMI T0318 370 :LSG 1tkjA 163 :GSP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLFA 1tkjA 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETEG T0318 415 :KSSIADMKN 1tkjA 202 :RSDHAPFKN T0318 449 :EGLRWLHLDIAAP 1tkjA 211 :VGVPVGGLFTGAG Number of specific fragments extracted= 17 number of extra gaps= 4 total=150 Number of alignments=10 # 1tkjA read from 1tkjA/merged-good-all-a2m # found chain 1tkjA in template set Warning: unaligning (T0318)A232 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1tkjA)N66 Warning: unaligning (T0318)F233 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1tkjA)N66 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tkjA)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)G168 Warning: unaligning (T0318)M429 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)G201 Warning: unaligning (T0318)D430 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)G201 T0318 153 :DKLTNEDAVF 1tkjA 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1tkjA 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1tkjA 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPP 1tkjA 58 :TSGGATG T0318 234 :VVLSHEV 1tkjA 67 :LIANWPG T0318 242 :G 1tkjA 74 :G T0318 244 :TEHIALVGKGV 1tkjA 76 :PNKVLMAGAHL T0318 264 :KTKTGMPNMK 1tkjA 87 :DSVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tkjA 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tkjA 121 :KHLRFAWWGAEEL T0318 317 :DD 1tkjA 134 :GL T0318 343 :DGVFYAKETL 1tkjA 136 :IGSKFYVNNL T0318 353 :KATTIFDMATL 1tkjA 152 :KLAGYLNFDMI T0318 370 :LSG 1tkjA 163 :GSP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLF 1tkjA 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETE T0318 428 :K 1tkjA 199 :G T0318 431 :GPPSA 1tkjA 202 :RSDHA T0318 443 :AHIG 1tkjA 207 :PFKN T0318 449 :EGLRWLHL 1tkjA 211 :VGVPVGGL Number of specific fragments extracted= 19 number of extra gaps= 4 total=169 Number of alignments=11 # 1tkjA read from 1tkjA/merged-good-all-a2m # found chain 1tkjA in template set Warning: unaligning (T0318)A232 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1tkjA)N66 Warning: unaligning (T0318)F233 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1tkjA)N66 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tkjA)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tkjA)G168 Warning: unaligning (T0318)P407 because of BadResidue code BAD_PEPTIDE in next template residue (1tkjA)G201 Warning: unaligning (T0318)D408 because of BadResidue code BAD_PEPTIDE at template residue (1tkjA)G201 T0318 153 :DKLTNEDAVFL 1tkjA 2 :PDIPLANVKAH T0318 166 :LSESVRETARLIDT 1tkjA 13 :LTQLSTIAANNGGN T0318 180 :PANILTTDALVDEAVKVGNATGSKITVIR 1tkjA 28 :AHGRPGYKASVDYVKAKLDAAGYTTTLQQ T0318 226 :AGPTPP 1tkjA 59 :SGGATG T0318 234 :VVLSH 1tkjA 67 :LIANW T0318 242 :GS 1tkjA 72 :PG T0318 244 :TEHIALVGKG 1tkjA 76 :PNKVLMAGAH T0318 263 :IKTKTGMPNMK 1tkjA 86 :LDSVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tkjA 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tkjA 121 :KHLRFAWWGAEEL T0318 344 :GVFYAKET 1tkjA 137 :GSKFYVNN T0318 352 :LKATTIFDMATLT 1tkjA 151 :SKLAGYLNFDMIG T0318 371 :SG 1tkjA 164 :SP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLFA 1tkjA 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETEG T0318 409 :LF 1tkjA 202 :RS T0318 426 :L 1tkjA 204 :D T0318 441 :IGAHIG 1tkjA 205 :HAPFKN T0318 449 :EGLRWLHL 1tkjA 211 :VGVPVGGL Number of specific fragments extracted= 18 number of extra gaps= 4 total=187 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a9xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0318 read from 1a9xA/merged-good-all-a2m # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)D558 Warning: unaligning (T0318)G442 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)T740 Warning: unaligning (T0318)A443 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)T740 Warning: unaligning (T0318)H444 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a9xA)V750 Warning: unaligning (T0318)I445 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a9xA)V750 T0318 76 :TVPDASSRGN 1a9xA 408 :GFDPKVSLDD T0318 87 :PTNAHSIYKELKPINYP 1a9xA 418 :PEALTKIRRELKDAGAD T0318 120 :VLSHVAAIARTFCKFSMKTS 1a9xA 435 :RIWYIADAFRAGLSVDGVFN T0318 160 :AVFLTDLSESVRETARLIDTPANILTTDALVD 1a9xA 460 :RWFLVQIEELVRLEEKVAEVGITGLNADFLRQ T0318 192 :EAVKVGNATGSKITVIR 1a9xA 512 :EIRKLRDQYDLHPVYKR T0318 217 :FGGIYHVGKAGPTPPA 1a9xA 538 :TDTAYMYSTYEEECEA T0318 239 :EVP 1a9xA 554 :NPS T0318 244 :TEHIALVGKGVV 1a9xA 559 :REKIMVLGGGPN T0318 271 :NMKRDMGGAAGMLEAYSALVKHGF 1a9xA 571 :RIGQGIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNVSPIAN 1a9xA 595 :ETIMVNCNPETVSTDYDT T0318 325 :GKTVEINNTDAE 1a9xA 613 :SDRLYFEPVTLE T0318 343 :DGVFYA 1a9xA 625 :DVLEIV T0318 350 :ETLKATTIF 1a9xA 631 :RIEKPKGVI T0318 361 :ATLTGAQAW 1a9xA 640 :VQYGGQTPL T0318 370 :LSGRLHGAAMTNDEQL 1a9xA 654 :LEAAGVPVIGTSPDAI T0318 386 :ENEIIKAGKASGDLVAPM 1a9xA 675 :RERFQHAVERLKLKQPAN T0318 404 :LFAPDLFFGDLKSS 1a9xA 695 :VTAIEMAVEKAKEI T0318 425 :NLG 1a9xA 709 :GYP T0318 430 :DG 1a9xA 729 :YD T0318 434 :SAVAGLLI 1a9xA 731 :EADLRRYF T0318 446 :GFGEGLRWLHLDIAAPA 1a9xA 754 :HFLDDAVEVDVDAICDG T0318 467 :RGTGYGPALFSTLLGK 1a9xA 800 :TLSQEIQDVMRQQVQK Number of specific fragments extracted= 22 number of extra gaps= 2 total=209 Number of alignments=13 # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)D558 T0318 83 :RGNTPTNAHSIYKELKP 1a9xA 417 :DPEALTKIRRELKDAGA T0318 116 :EYPDVLSHVAA 1a9xA 434 :DRIWYIADAFR T0318 153 :DKLTNEDA 1a9xA 445 :AGLSVDGV T0318 161 :VFLTDLSESVRETARLIDTPANILTTDALVD 1a9xA 461 :WFLVQIEELVRLEEKVAEVGITGLNADFLRQ T0318 192 :EAVKVGNATGSKITVIR 1a9xA 512 :EIRKLRDQYDLHPVYKR T0318 217 :FGGIYHVGKAGPTPPA 1a9xA 538 :TDTAYMYSTYEEECEA T0318 239 :EVP 1a9xA 554 :NPS T0318 244 :TEHIALVGKGVVY 1a9xA 559 :REKIMVLGGGPNR T0318 272 :MKRDMGGAAGMLEAYSALVKHGF 1a9xA 572 :IGQGIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNVSPIA 1a9xA 595 :ETIMVNCNPETVSTDYD T0318 324 :SGKTVEINNTDAE 1a9xA 612 :TSDRLYFEPVTLE T0318 343 :DGVFYA 1a9xA 625 :DVLEIV T0318 350 :ETLKATTIF 1a9xA 631 :RIEKPKGVI T0318 361 :ATLTGAQAW 1a9xA 640 :VQYGGQTPL T0318 370 :LSGRLHGAAMTNDEQL 1a9xA 654 :LEAAGVPVIGTSPDAI T0318 386 :ENEIIKAGKASGDLVAPM 1a9xA 675 :RERFQHAVERLKLKQPAN T0318 404 :LFAPDLFFGDLKS 1a9xA 695 :VTAIEMAVEKAKE Number of specific fragments extracted= 17 number of extra gaps= 1 total=226 Number of alignments=14 # 1a9xA read from 1a9xA/merged-good-all-a2m # found chain 1a9xA in training set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1a9xA)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1a9xA)D558 T0318 74 :LITVPDASSRGNTPTNAHSI 1a9xA 446 :GLSVDGVFNLTNIDRWFLVQ T0318 117 :YPDVLSHVAAIART 1a9xA 466 :IEELVRLEEKVAEV T0318 151 :VCDKLTNEDAVFLTDLSESVRETARLIDTP 1a9xA 480 :GITGLNADFLRQLKRKGFADARLAKLAGVR T0318 190 :VDEAVKVGNATGSKITVIR 1a9xA 510 :EAEIRKLRDQYDLHPVYKR T0318 223 :VGKAG 1a9xA 529 :VDTCA T0318 228 :PTPPAFVVLSHEVP 1a9xA 537 :ATDTAYMYSTYEEE T0318 244 :TEHIALVGKG 1a9xA 559 :REKIMVLGGG T0318 262 :QIKTK 1a9xA 569 :PNRIG T0318 274 :RDMGGAAGMLEAYSALVKHGF 1a9xA 574 :QGIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNV 1a9xA 595 :ETIMVNCNPETVS T0318 333 :TDAEGR 1a9xA 608 :TDYDTS T0318 339 :LILADGVFYA 1a9xA 621 :VTLEDVLEIV T0318 350 :ETLKATTIF 1a9xA 631 :RIEKPKGVI T0318 363 :LTGAQAWLSGR 1a9xA 650 :LARALEAAGVP T0318 377 :AAMTNDEQL 1a9xA 661 :VIGTSPDAI T0318 386 :ENEIIKAGKASG 1a9xA 675 :RERFQHAVERLK Number of specific fragments extracted= 16 number of extra gaps= 1 total=242 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yloA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yloA expands to /projects/compbio/data/pdb/1ylo.pdb.gz 1yloA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 240, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 250, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 256, because occupancy 0.500 <= existing 0.500 in 1yloA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 799, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 803, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 805, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 811, because occupancy 0.500 <= existing 0.500 in 1yloA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 1yloA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1552, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1556, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1558, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1560, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 1yloA Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 1yloA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0318 read from 1yloA/merged-good-all-a2m # 1yloA read from 1yloA/merged-good-all-a2m # adding 1yloA to template set # found chain 1yloA in template set Warning: unaligning (T0318)K273 because of BadResidue code BAD_PEPTIDE in next template residue (1yloA)D166 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE at template residue (1yloA)D166 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1yloA)D167 Warning: unaligning (T0318)R338 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)R203 Warning: unaligning (T0318)D343 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)R203 Warning: unaligning (T0318)W453 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)L298 Warning: unaligning (T0318)L454 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)L298 T0318 170 :VRETARLIDTPANILTTDALVDEAVKVGNATGSKITVI 1yloA 3 :LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFD T0318 216 :GFGGIY 1yloA 41 :GLGSVL T0318 228 :PTPPAFVVLSHEV 1yloA 52 :STGPKVMICAHMD T0318 241 :PG 1yloA 75 :RE T0318 254 :VVYDT 1yloA 146 :VTFDT T0318 261 :LQIKTKT 1yloA 152 :FQVLPHQ T0318 271 :NM 1yloA 163 :KA T0318 276 :MGGAAGMLEAYSALVKHGFSQTLH 1yloA 168 :RLSCYLLVTLLRELHDAELPAEVW T0318 328 :VEINNTDAEG 1yloA 192 :LVASSSEEVG T0318 344 :GVFYAKETLKATTIFDMATLT 1yloA 204 :GGQTATRAVSPDVAIVLDTAC T0318 371 :SGRLHGAAMTN 1yloA 239 :IGNGPMLVLSD T0318 382 :DEQLENEIIKAGKASGDLVAPMLF 1yloA 255 :PPKLTAWIETVAAEIGVPLQADMF T0318 427 :GK 1yloA 279 :SN T0318 430 :DG 1yloA 281 :GG T0318 434 :SAVAGLL 1yloA 283 :TDGGAVH T0318 447 :FGEGLR 1yloA 291 :TGTGVP T0318 455 :HLDIAAPAEVGD 1yloA 299 :VMGPATRHGHCA T0318 468 :GTGYGPALFSTLLGKYT 1yloA 314 :ADCRDILQMEQLLSALI Number of specific fragments extracted= 18 number of extra gaps= 3 total=260 Number of alignments=16 # 1yloA read from 1yloA/merged-good-all-a2m # found chain 1yloA in template set Warning: unaligning (T0318)K273 because of BadResidue code BAD_PEPTIDE in next template residue (1yloA)D166 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE at template residue (1yloA)D166 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1yloA)D167 Warning: unaligning (T0318)R338 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)R203 Warning: unaligning (T0318)D343 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)R203 Warning: unaligning (T0318)W453 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)L298 Warning: unaligning (T0318)L454 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)L298 T0318 170 :VRETARLIDTPANILTTDALVDEAVKVGNATGSKITVI 1yloA 3 :LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFD T0318 216 :GFGGIYH 1yloA 41 :GLGSVLI T0318 225 :KAGPTPPAFVVLSHEV 1yloA 49 :LNESTGPKVMICAHMD T0318 254 :VVYDT 1yloA 146 :VTFDT T0318 261 :LQIKTKT 1yloA 152 :FQVLPHQ T0318 271 :NM 1yloA 163 :KA T0318 276 :MGGAAGMLEAYSALVKHGFSQTLH 1yloA 168 :RLSCYLLVTLLRELHDAELPAEVW T0318 328 :VEINNTDAEG 1yloA 192 :LVASSSEEVG T0318 344 :GVFYAKETLKATTIFDMATLT 1yloA 204 :GGQTATRAVSPDVAIVLDTAC T0318 371 :SGRLHGAAMTN 1yloA 239 :IGNGPMLVLSD T0318 382 :DEQLENEIIKAGKASGDLVAPMLF 1yloA 255 :PPKLTAWIETVAAEIGVPLQADMF T0318 430 :DGPPSAVAG 1yloA 279 :SNGGTDGGA T0318 444 :HIGFGEGLR 1yloA 288 :VHLTGTGVP T0318 455 :HLDIAAPAEVGD 1yloA 299 :VMGPATRHGHCA T0318 471 :YGPALFSTLLGKYT 1yloA 317 :RDILQMEQLLSALI Number of specific fragments extracted= 15 number of extra gaps= 3 total=275 Number of alignments=17 # 1yloA read from 1yloA/merged-good-all-a2m # found chain 1yloA in template set Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1yloA)D167 Warning: unaligning (T0318)R338 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)R203 Warning: unaligning (T0318)D343 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)R203 Warning: unaligning (T0318)W453 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yloA)L298 Warning: unaligning (T0318)L454 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yloA)L298 T0318 170 :VRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIR 1yloA 3 :LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDG T0318 217 :FGG 1yloA 42 :LGS T0318 228 :PTPPAFVVLSHEV 1yloA 52 :STGPKVMICAHMD T0318 243 :S 1yloA 118 :N T0318 244 :TEHIA 1yloA 121 :SAMRV T0318 254 :VVYDT 1yloA 146 :VTFDT T0318 261 :LQIKTKT 1yloA 152 :FQVLPHQ T0318 276 :MGGAAGMLEAYSALVKHGFSQTLH 1yloA 168 :RLSCYLLVTLLRELHDAELPAEVW T0318 328 :VEINNTDAEG 1yloA 192 :LVASSSEEVG T0318 344 :GVFYAKETLKATTIFDMATLT 1yloA 204 :GGQTATRAVSPDVAIVLDTAC T0318 371 :SGRLHGAAMTND 1yloA 239 :IGNGPMLVLSDK T0318 383 :EQLENEIIKAGKASGDLVAP 1yloA 256 :PKLTAWIETVAAEIGVPLQA T0318 421 :MK 1yloA 276 :DM T0318 429 :MDGPPSAVAG 1yloA 278 :FSNGGTDGGA T0318 444 :HIGFGEGLR 1yloA 288 :VHLTGTGVP T0318 455 :HLDIAAP 1yloA 299 :VMGPATR Number of specific fragments extracted= 16 number of extra gaps= 3 total=291 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1amp/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1amp expands to /projects/compbio/data/pdb/1amp.pdb.gz 1amp:Warning: there is no chain 1amp will retry with 1ampA # T0318 read from 1amp/merged-good-all-a2m # 1amp read from 1amp/merged-good-all-a2m # adding 1amp to template set # found chain 1amp in template set Warning: unaligning (T0318)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)S59 Warning: unaligning (T0318)A199 because of BadResidue code BAD_PEPTIDE at template residue (1amp)S59 Warning: unaligning (T0318)R274 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1amp)D118 Warning: unaligning (T0318)D275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1amp)D118 Warning: unaligning (T0318)A361 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)M180 Warning: unaligning (T0318)T362 because of BadResidue code BAD_PEPTIDE at template residue (1amp)M180 T0318 92 :SIYKELKPI 1amp 9 :TVTAWLPQV T0318 116 :EYPDVLSHVAAIA 1amp 18 :DASQITGTISSLE T0318 133 :KFSMKT 1amp 31 :SFTNRF T0318 153 :DKL 1amp 37 :YTT T0318 158 :E 1amp 40 :T T0318 165 :DLSES 1amp 41 :SGAQA T0318 186 :TDALVDEAVKVG 1amp 46 :SDWIASEWQALS T0318 200 :TG 1amp 60 :LP T0318 202 :SKITVIR 1amp 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1amp 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGGLQIKTKTGMPNMK 1amp 100 :STIGSHTNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGFS 1amp 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLCIVENN 1amp 141 :RSIAFMAYAAEEV T0318 335 :AEGRL 1amp 155 :LRGSQ T0318 343 :DGVFYAKET 1amp 160 :DLANQYKSE T0318 352 :LKATTIFDM 1amp 170 :KNVVSALQL T0318 363 :LTG 1amp 181 :TNY T0318 371 :SGRLHGAAM 1amp 184 :KGSAQDVVF T0318 380 :TNDEQLENEIIKAGK 1amp 196 :YTDSNFTQYLTQLMD T0318 412 :GDLKSSIAD 1amp 211 :EYLPSLTYG T0318 426 :LGKMDGPPSAVAGLL 1amp 220 :FDTCGYACSDHASWH T0318 448 :GEGLRW 1amp 235 :NAGYPA T0318 459 :AAPA 1amp 241 :AMPF T0318 467 :RGTGYGPALFSTLLGKY 1amp 266 :DPTGSHAKKFTQLGLAY Number of specific fragments extracted= 24 number of extra gaps= 3 total=315 Number of alignments=19 # 1amp read from 1amp/merged-good-all-a2m # found chain 1amp in template set Warning: unaligning (T0318)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)S59 Warning: unaligning (T0318)A199 because of BadResidue code BAD_PEPTIDE at template residue (1amp)S59 Warning: unaligning (T0318)R274 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1amp)D118 Warning: unaligning (T0318)D275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1amp)D118 Warning: unaligning (T0318)A361 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)M180 Warning: unaligning (T0318)T362 because of BadResidue code BAD_PEPTIDE at template residue (1amp)M180 T0318 167 :SESVRETARLIDTPANI 1amp 20 :SQITGTISSLESFTNRF T0318 186 :TDALVDEAVKVG 1amp 46 :SDWIASEWQALS T0318 200 :TG 1amp 60 :LP T0318 202 :SKITVIR 1amp 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1amp 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGGLQIKTKTGMPNMK 1amp 100 :STIGSHTNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGFS 1amp 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLCIVENN 1amp 141 :RSIAFMAYAAEEV T0318 335 :AEGRL 1amp 155 :LRGSQ T0318 343 :DGVFYAKET 1amp 160 :DLANQYKSE T0318 352 :LKATTIFDM 1amp 170 :KNVVSALQL T0318 363 :LTG 1amp 181 :TNY T0318 371 :SGRLHGAAM 1amp 184 :KGSAQDVVF T0318 380 :TNDEQLENEIIKAGK 1amp 196 :YTDSNFTQYLTQLMD T0318 412 :GDLKSSIADMK 1amp 211 :EYLPSLTYGFD T0318 428 :KMDGPPSAVAGLL 1amp 222 :TCGYACSDHASWH T0318 449 :EGLRW 1amp 236 :AGYPA T0318 459 :AAPAE 1amp 241 :AMPFE T0318 465 :GD 1amp 246 :SK T0318 467 :RGTGYGPALFSTLLGKY 1amp 266 :DPTGSHAKKFTQLGLAY Number of specific fragments extracted= 20 number of extra gaps= 3 total=335 Number of alignments=20 # 1amp read from 1amp/merged-good-all-a2m # found chain 1amp in template set Warning: unaligning (T0318)N198 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)S59 Warning: unaligning (T0318)A199 because of BadResidue code BAD_PEPTIDE at template residue (1amp)S59 Warning: unaligning (T0318)D275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1amp)D118 Warning: unaligning (T0318)A361 because of BadResidue code BAD_PEPTIDE in next template residue (1amp)M180 Warning: unaligning (T0318)T362 because of BadResidue code BAD_PEPTIDE at template residue (1amp)M180 T0318 166 :LSESVRETARLIDTPANILT 1amp 19 :ASQITGTISSLESFTNRFYT T0318 186 :TDALVDEAVKVG 1amp 46 :SDWIASEWQALS T0318 200 :T 1amp 60 :L T0318 201 :GSKITVIR 1amp 62 :NASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 1amp 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTKTGMPNMKR 1amp 98 :LDSTIGSHTNEQSV T0318 276 :MGGAAGMLEAYSALVKHGFS 1amp 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLCIVEN 1amp 141 :RSIAFMAYAAEE T0318 309 :VSPI 1amp 153 :VGLR T0318 343 :DGVFYAKET 1amp 160 :DLANQYKSE T0318 352 :LKATTIFDM 1amp 170 :KNVVSALQL T0318 363 :LT 1amp 181 :TN T0318 371 :SGRLHGAAMTND 1amp 184 :KGSAQDVVFITD T0318 383 :EQLENEIIKAGKA 1amp 199 :SNFTQYLTQLMDE T0318 413 :DLKSSIADMKNSNL 1amp 212 :YLPSLTYGFDTCGY T0318 430 :DGPPS 1amp 226 :ACSDH T0318 438 :GLLIG 1amp 231 :ASWHN T0318 449 :EGLRWLHLDI 1amp 236 :AGYPAAMPFE T0318 459 :AAPAEVGDRGTGYGPALFSTLLGKYTSV 1amp 251 :YNPRIHTTQDTLANSDPTGSHAKKFTQL Number of specific fragments extracted= 19 number of extra gaps= 3 total=354 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lokA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lokA expands to /projects/compbio/data/pdb/1lok.pdb.gz 1lokA:Skipped atom 7, because occupancy 0.500 <= existing 0.500 in 1lokA Skipped atom 9, because occupancy 0.500 <= existing 0.500 in 1lokA Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1lokA Skipped atom 161, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 163, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 165, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 235, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 316, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 318, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 395, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 402, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 404, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 406, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 408, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 496, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 510, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 512, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 514, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 516, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 828, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 830, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 832, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 834, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1083, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1187, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1189, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1191, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1193, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1195, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1342, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1344, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1613, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1615, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1724, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1726, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1728, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1730, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1732, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 1734, because occupancy 1.000 <= existing 1.000 in 1lokA Skipped atom 2097, because occupancy 1.000 <= existing 1.000 in 1lokA # T0318 read from 1lokA/merged-good-all-a2m # 1lokA read from 1lokA/merged-good-all-a2m # adding 1lokA to template set # found chain 1lokA in template set Warning: unaligning (T0318)A199 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)L60 Warning: unaligning (T0318)T200 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)L60 Warning: unaligning (T0318)G201 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N62 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)D118 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N182 T0318 92 :SIYKELKPI 1lokA 9 :TVTAWLPQV T0318 116 :EYPDVLSHVAAIA 1lokA 18 :DASQITGTISSLE T0318 133 :KFSMKTS 1lokA 31 :SFTNRFY T0318 154 :KL 1lokA 38 :TT T0318 171 :RETARL 1lokA 40 :TSGAQA T0318 186 :TDALVDEAVKVGN 1lokA 46 :SDWIASEWQALSA T0318 202 :SKITVIR 1lokA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1lokA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGGLQIKTKTGMPNMK 1lokA 100 :STIGSHTNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGF 1lokA 119 :ASGIAAVTEVIRVLSENNF T0318 295 :SQTLHACLCIVEN 1lokA 140 :KRSIAFMAYAAEE T0318 336 :EGR 1lokA 156 :RGS T0318 342 :ADGVFYAKET 1lokA 159 :QDLANQYKSE T0318 352 :LKATTIFDMAT 1lokA 170 :KNVVSALQLDM T0318 365 :G 1lokA 183 :Y T0318 371 :SGRLHGAAM 1lokA 184 :KGSAQDVVF T0318 380 :TNDEQLENEIIKAGKA 1lokA 196 :YTDSNFTQYLTQLMDE T0318 410 :FFGDLK 1lokA 212 :YLPSLT T0318 424 :SNLGKMDGPPSAVAGLL 1lokA 218 :YGFDTCGYACSDHASWH T0318 448 :GEGLRWL 1lokA 235 :NAGYPAA T0318 456 :LDI 1lokA 242 :MPF T0318 467 :RGTGYGPALFSTLLG 1lokA 266 :DPTGSHAKKFTQLGL Number of specific fragments extracted= 22 number of extra gaps= 4 total=376 Number of alignments=22 # 1lokA read from 1lokA/merged-good-all-a2m # found chain 1lokA in template set Warning: unaligning (T0318)A199 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)L60 Warning: unaligning (T0318)T200 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)L60 Warning: unaligning (T0318)G201 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N62 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)D118 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N182 T0318 168 :ESVRETARLIDTPANILT 1lokA 21 :QITGTISSLESFTNRFYT T0318 186 :TDALVDEAVKVGN 1lokA 46 :SDWIASEWQALSA T0318 202 :SKITVIR 1lokA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1lokA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGGLQIKTKTGMPNMK 1lokA 100 :STIGSHTNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGFS 1lokA 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLCIVEN 1lokA 141 :RSIAFMAYAAEE T0318 336 :EGR 1lokA 156 :RGS T0318 343 :DGVFYAKET 1lokA 160 :DLANQYKSE T0318 352 :LKATTIFDMAT 1lokA 170 :KNVVSALQLDM T0318 365 :G 1lokA 183 :Y T0318 371 :SGRLHGAAM 1lokA 184 :KGSAQDVVF T0318 380 :TNDEQLENEIIKAGKA 1lokA 196 :YTDSNFTQYLTQLMDE T0318 410 :FFGDLKS 1lokA 212 :YLPSLTY T0318 425 :NLGKMDGPPSAVAGLL 1lokA 219 :GFDTCGYACSDHASWH T0318 449 :EGLRWL 1lokA 236 :AGYPAA T0318 460 :APAE 1lokA 242 :MPFE T0318 465 :GD 1lokA 246 :SK T0318 467 :RGTGYGPALFSTLLG 1lokA 266 :DPTGSHAKKFTQLGL Number of specific fragments extracted= 19 number of extra gaps= 4 total=395 Number of alignments=23 # 1lokA read from 1lokA/merged-good-all-a2m # found chain 1lokA in template set Warning: unaligning (T0318)G201 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N62 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)D118 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1lokA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1lokA)N182 T0318 166 :LSESVRETARLIDTPANILTTDALVD 1lokA 19 :ASQITGTISSLESFTNRFYTTTSGAQ T0318 192 :EAVKVGNAT 1lokA 48 :WIASEWQAL T0318 202 :SKITVIR 1lokA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 1lokA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTKTGMPNMKR 1lokA 98 :LDSTIGSHTNEQSV T0318 276 :MGGAAGMLEAYSALVKHGFS 1lokA 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLCIVEN 1lokA 141 :RSIAFMAYAAEE T0318 309 :VSP 1lokA 153 :VGL T0318 343 :DGVFYAKET 1lokA 160 :DLANQYKSE T0318 352 :LKATTIFDMAT 1lokA 170 :KNVVSALQLDM T0318 371 :SGRLHGAAMTND 1lokA 184 :KGSAQDVVFITD T0318 383 :EQLENEIIKAGKAS 1lokA 199 :SNFTQYLTQLMDEY T0318 406 :APDL 1lokA 213 :LPSL T0318 418 :IADMKNSNL 1lokA 217 :TYGFDTCGY T0318 430 :DGPPSA 1lokA 226 :ACSDHA T0318 439 :LLIG 1lokA 232 :SWHN T0318 449 :EGLRWLHLDIAAPAE 1lokA 236 :AGYPAAMPFESKFND T0318 464 :VGDRGTGYGPALFSTLLGKYTSV 1lokA 256 :HTTQDTLANSDPTGSHAKKFTQL Number of specific fragments extracted= 18 number of extra gaps= 3 total=413 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2amxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2amxA expands to /projects/compbio/data/pdb/2amx.pdb.gz 2amxA:# T0318 read from 2amxA/merged-good-all-a2m # 2amxA read from 2amxA/merged-good-all-a2m # adding 2amxA to template set # found chain 2amxA in template set T0318 39 :KEVAQKFVTDGDSWNSMIS 2amxA 64 :AEFFLKWARKYNLQPNMSD T0318 75 :IT 2amxA 90 :LF T0318 81 :SSRGNTPTNAHSIYKELKPI 2amxA 92 :TKEGKSLAEFIRKAISVSDL T0318 114 :FAEYPDVLSHVAAIARTFCKFS 2amxA 112 :YRDYDFIEDLAKWAVIEKYKEG T0318 146 :V 2amxA 134 :V T0318 148 :IDVVC 2amxA 135 :VLMEF T0318 172 :ETAR 2amxA 145 :FVSS T0318 181 :ANILTTDALVDEAVKVGNAT 2amxA 149 :SYGLDVELIHKAFIKGIKNA T0318 213 :LKAGFGGIYH 2amxA 169 :TELLNNKIHV T0318 232 :AFVVLSHEVPG 2amxA 179 :ALICISDTGHA T0318 253 :GVVYDTGGLQIKTKTG 2amxA 207 :FVGFDHGGREIDLKDH T0318 285 :AYSALVKHGFSQTLHA 2amxA 225 :VYHSVRDHGLHLTVHA T0318 310 :SPIANKPDD 2amxA 241 :GEDATLPNL T0318 343 :DGVFYAKETLKATTIFDMAT 2amxA 250 :NTLYTAINILNVERIGHGIR T0318 379 :MTNDEQLENEIIKA 2amxA 270 :VSESDELIELVKKK T0318 393 :GKASGDLVAPMLFAP 2amxA 293 :SNLLLNNVKSMDTHP T0318 410 :FFGDLKSSIADMKNSNLG 2amxA 308 :IRKLYDAGVKVSVNSDDP T0318 429 :MDG 2amxA 329 :LSN T0318 434 :SAVAGLLIGAHI 2amxA 332 :INDNYEKLYIHL T0318 467 :RGTGYGPALFSTLLGKYT 2amxA 344 :NFTLEEFMIMNNWAFEKS Number of specific fragments extracted= 20 number of extra gaps= 0 total=433 Number of alignments=25 # 2amxA read from 2amxA/merged-good-all-a2m # found chain 2amxA in template set T0318 31 :NVTFEGKFKEVAQK 2amxA 64 :AEFFLKWARKYNLQ T0318 73 :HLITVPDASSR 2amxA 78 :PNMSDDEILDH T0318 84 :GNTPTNAHSIYKELKPINY 2amxA 95 :GKSLAEFIRKAISVSDLYR T0318 113 :LFAEYPDVLSHVAAIARTFC 2amxA 114 :DYDFIEDLAKWAVIEKYKEG T0318 144 :LNVNIDVVC 2amxA 134 :VVLMEFRYS T0318 161 :V 2amxA 144 :T T0318 172 :ETAR 2amxA 145 :FVSS T0318 181 :ANILTTDALVDEAVKVGNAT 2amxA 149 :SYGLDVELIHKAFIKGIKNA T0318 213 :LKAGFGGIYH 2amxA 169 :TELLNNKIHV T0318 232 :AFVVLSHEVP 2amxA 179 :ALICISDTGH T0318 253 :GVVYDTGGLQIKTKTG 2amxA 207 :FVGFDHGGREIDLKDH T0318 285 :AYSALVKHGFSQTLHA 2amxA 225 :VYHSVRDHGLHLTVHA T0318 310 :SPIANKPDD 2amxA 241 :GEDATLPNL T0318 343 :DGVFYAKETLKATTIFDMAT 2amxA 250 :NTLYTAINILNVERIGHGIR T0318 379 :MTNDEQLENEIIKA 2amxA 270 :VSESDELIELVKKK T0318 393 :GKASGDLVAPMLFAP 2amxA 293 :SNLLLNNVKSMDTHP T0318 410 :FFGDLKSSIADMKNSNL 2amxA 308 :IRKLYDAGVKVSVNSDD T0318 437 :AGLL 2amxA 325 :PGMF T0318 441 :IGAHI 2amxA 339 :LYIHL T0318 467 :RGTGYGPALFSTLLGKYT 2amxA 344 :NFTLEEFMIMNNWAFEKS Number of specific fragments extracted= 20 number of extra gaps= 0 total=453 Number of alignments=26 # 2amxA read from 2amxA/merged-good-all-a2m # found chain 2amxA in template set Warning: unaligning (T0318)G63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2amxA)K51 Warning: unaligning (T0318)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2amxA)K51 T0318 26 :KSVLKNVTFEGKFKEV 2amxA 34 :LNGMSKKERYEIWRRI T0318 65 :HPLHYELAHLITVPDASSRGNTP 2amxA 52 :VELHCHLDLTFSAEFFLKWARKY T0318 88 :TNAHSIYKELKPI 2amxA 83 :DEILDHYLFTKEG T0318 115 :AEYPD 2amxA 96 :KSLAE T0318 124 :VAAIARTFCKFSM 2amxA 101 :FIRKAISVSDLYR T0318 156 :TNEDAVFLTD 2amxA 114 :DYDFIEDLAK T0318 168 :ESVRETARLI 2amxA 124 :WAVIEKYKEG T0318 181 :ANILTTDALVDEAVKVGNAT 2amxA 149 :SYGLDVELIHKAFIKGIKNA T0318 214 :KAGFGGIYH 2amxA 170 :ELLNNKIHV T0318 232 :AFVVLSHEVPGS 2amxA 179 :ALICISDTGHAA T0318 254 :VVYDTGGLQIKTKTG 2amxA 208 :VGFDHGGREIDLKDH T0318 276 :MG 2amxA 223 :KD T0318 285 :AYSALVKHGFSQTLHA 2amxA 225 :VYHSVRDHGLHLTVHA T0318 310 :SPIANKPDD 2amxA 241 :GEDATLPNL T0318 343 :DGVFYAKETLKATTIFDMA 2amxA 250 :NTLYTAINILNVERIGHGI T0318 378 :AMTNDEQLENEIIKA 2amxA 269 :RVSESDELIELVKKK Number of specific fragments extracted= 16 number of extra gaps= 1 total=469 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v71A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v71A expands to /projects/compbio/data/pdb/1v71.pdb.gz 1v71A:# T0318 read from 1v71A/merged-good-all-a2m # 1v71A read from 1v71A/merged-good-all-a2m # adding 1v71A to template set # found chain 1v71A in template set T0318 39 :KEVAQKFVTDGDSWNSMISRIPA 1v71A 10 :YDDVASASERIKKFANKTPVLTS T0318 66 :PLHYELAHLITV 1v71A 40 :VAEVFFKCENFQ T0318 82 :SRGNT 1v71A 52 :KMGAF T0318 89 :NAHSIYKELK 1v71A 57 :KFRGALNALS T0318 101 :NYPEDTKNVHFVLFAEYPDVLSHVAAIART 1v71A 67 :QLNEAQRKAGVLTFSSGNHAQAIALSAKIL T0318 145 :NVNIDVVC 1v71A 97 :GIPAKIIM T0318 153 :DKLTNED 1v71A 106 :LDAPEAK T0318 194 :VKVGNATGSKITVIRG 1v71A 113 :VAATKGYGGQVIMYDR T0318 210 :EELLKAGFGGI 1v71A 139 :EISEREGLTII T0318 230 :PPA 1v71A 150 :PPY T0318 243 :STEHIALVGKG 1v71A 173 :GPLDALFVCLG T0318 278 :GA 1v71A 184 :GG T0318 281 :GMLEAYSALVKHGFS 1v71A 186 :GLLSGSALAARHFAP T0318 296 :QTLHACLC 1v71A 202 :CEVYGVEP T0318 308 :NVSPIANKPDD 1v71A 232 :TIADGAQTQHL T0318 343 :DGVFYAKET 1v71A 245 :YTFSIIKEK T0318 354 :ATTIFDM 1v71A 254 :VDDILTV T0318 381 :NDEQLENEIIKAGKASGDLVAPM 1v71A 261 :SDEELIDCLKFYAARMKIVVEPT T0318 430 :DG 1v71A 284 :GC T0318 434 :SAVAGLL 1v71A 286 :LSFAAAR T0318 443 :AHIGFGEGLRWLHLDIAAPA 1v71A 293 :AMKEKLKNKRIGIIISGGNV Number of specific fragments extracted= 21 number of extra gaps= 0 total=490 Number of alignments=28 # 1v71A read from 1v71A/merged-good-all-a2m # found chain 1v71A in template set T0318 74 :LITVPDA 1v71A 7 :LPTYDDV T0318 88 :TNAHSIYKELKPINYPEDTKNVHFVLFA 1v71A 14 :ASASERIKKFANKTPVLTSSTVNKEFVA T0318 120 :VLSHVAAIARTFCKFSMKT 1v71A 57 :KFRGALNALSQLNEAQRKA T0318 147 :NIDVVCDK 1v71A 76 :GVLTFSSG T0318 165 :DLSESVRETARLIDTPA 1v71A 84 :NHAQAIALSAKILGIPA T0318 183 :ILTTDALVDEA 1v71A 106 :LDAPEAKVAAT T0318 198 :NATGSKITVIR 1v71A 117 :KGYGGQVIMYD T0318 209 :GEELLKAGFGGI 1v71A 138 :KEISEREGLTII T0318 230 :PPA 1v71A 150 :PPY T0318 243 :STEHIALVGKG 1v71A 173 :GPLDALFVCLG T0318 259 :G 1v71A 184 :G T0318 279 :A 1v71A 185 :G T0318 281 :GMLEAYSALVKHGFS 1v71A 186 :GLLSGSALAARHFAP T0318 296 :QTLHACLC 1v71A 202 :CEVYGVEP T0318 343 :DGVFYAKET 1v71A 214 :DGQQSFRKG T0318 353 :KAT 1v71A 229 :TPK T0318 373 :RLHGAAMTND 1v71A 232 :TIADGAQTQH T0318 383 :EQLENEIIKA 1v71A 244 :NYTFSIIKEK T0318 397 :GDLVAPM 1v71A 254 :VDDILTV T0318 406 :APDLFFGDLKSSIADMKNS 1v71A 261 :SDEELIDCLKFYAARMKIV T0318 428 :KMDGPPSAVAGLL 1v71A 280 :VEPTGCLSFAAAR T0318 445 :I 1v71A 298 :L T0318 449 :EGLRWLHLDIAAPA 1v71A 299 :KNKRIGIIISGGNV Number of specific fragments extracted= 23 number of extra gaps= 0 total=513 Number of alignments=29 # 1v71A read from 1v71A/merged-good-all-a2m # found chain 1v71A in template set T0318 75 :ITVPDASSRGNTP 1v71A 8 :PTYDDVASASERI T0318 95 :KE 1v71A 21 :KK T0318 105 :DTKNVHFVLFAEYPDVL 1v71A 23 :FANKTPVLTSSTVNKEF T0318 145 :NVNIDVVC 1v71A 40 :VAEVFFKC T0318 153 :DKLTNEDAVF 1v71A 66 :SQLNEAQRKA T0318 165 :DLSESVRETARLIDTPA 1v71A 84 :NHAQAIALSAKILGIPA T0318 182 :NILTTDALVDEA 1v71A 105 :PLDAPEAKVAAT T0318 198 :NATGSKITVIRG 1v71A 117 :KGYGGQVIMYDR T0318 210 :EELLKAGFGGI 1v71A 139 :EISEREGLTII T0318 230 :PPA 1v71A 150 :PPY T0318 243 :STEHIALVGKG 1v71A 173 :GPLDALFVCLG T0318 278 :GAAGMLEAYSALVKHGFSQTLHACLC 1v71A 184 :GGGLLSGSALAARHFAPNCEVYGVEP T0318 304 :IVENNVSPIANKPDD 1v71A 215 :GQQSFRKGSIVHIDT T0318 333 :TDAEGR 1v71A 232 :TIADGA T0318 343 :DGVFYAKETL 1v71A 245 :YTFSIIKEKV T0318 355 :TTIFDM 1v71A 255 :DDILTV T0318 381 :NDEQLENEIIKAGKASGDLV 1v71A 261 :SDEELIDCLKFYAARMKIVV T0318 429 :MDGPPSAVAGL 1v71A 281 :EPTGCLSFAAA T0318 442 :GA 1v71A 292 :RA T0318 445 :IGFGEGLRWLHLDIAAP 1v71A 294 :MKEKLKNKRIGIIISGG Number of specific fragments extracted= 20 number of extra gaps= 0 total=533 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gytA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gytA expands to /projects/compbio/data/pdb/1gyt.pdb.gz 1gytA:# T0318 read from 1gytA/merged-good-all-a2m # 1gytA read from 1gytA/merged-good-all-a2m # adding 1gytA to template set # found chain 1gytA in template set T0318 1 :MTQVLVRNGIQAVGDGLTSLIIVGKKSVLKNVT 1gytA 1 :MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAE T0318 34 :FEGKFKEVAQKFVTDGDSWNSMISRIPASGRHPLH 1gytA 35 :LDKISDGYISALLRRGELEGKPGQTLLLHHVPNVL T0318 69 :YELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAE 1gytA 72 :RILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKG T0318 117 :YPDVLSHVAAIARTFCKFSMKTSGIRELNVNIDVVC 1gytA 123 :YWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMV T0318 154 :KLT 1gytA 163 :TRR T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1gytA 171 :ERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSY T0318 202 :SKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEV 1gytA 218 :VITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKG T0318 241 :PGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1gytA 259 :SEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPD 1gytA 367 :ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDE T0318 410 :FFGDLKSSIADMKNSN 1gytA 426 :YQEQLESNFADMANIG T0318 427 :GKMDG 1gytA 442 :GRPGG T0318 434 :SAVAGLLIGAHI 1gytA 447 :AITAGCFLSRFT T0318 449 :EGLRWLHLDIAAPAEVGD 1gytA 459 :RKYNWAHLDIAGTAWRSG T0318 467 :RGTGYGPALFSTLLGKYTSVP 1gytA 480 :GATGRPVALLAQFLLNRAGFN Number of specific fragments extracted= 14 number of extra gaps= 0 total=547 Number of alignments=31 # 1gytA read from 1gytA/merged-good-all-a2m # found chain 1gytA in template set T0318 4 :VLVRNGIQAVGDGLTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISRIPASGRHPLHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSMKTSGIRELNVNIDVVCDKLT 1gytA 13 :QRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRR T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1gytA 171 :ERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSY T0318 202 :SKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEV 1gytA 218 :VITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKG T0318 241 :PGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1gytA 259 :SEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPD 1gytA 367 :ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDE T0318 410 :FFGDLKSSIADMKNS 1gytA 426 :YQEQLESNFADMANI T0318 428 :KMDGPPSAVAGLLIGAHI 1gytA 441 :GGRPGGAITAGCFLSRFT T0318 449 :EGLRWLHLDIAAPAEVGD 1gytA 459 :RKYNWAHLDIAGTAWRSG T0318 467 :RGTGYGPALFSTLLGKYTSVP 1gytA 480 :GATGRPVALLAQFLLNRAGFN Number of specific fragments extracted= 9 number of extra gaps= 0 total=556 Number of alignments=32 # 1gytA read from 1gytA/merged-good-all-a2m # found chain 1gytA in template set T0318 3 :QVLVRNGIQAVGDGLTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISRIPASGRHPLHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSMKTSGIRELNVNIDVVC 1gytA 12 :KQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNV T0318 155 :LT 1gytA 164 :RR T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1gytA 171 :ERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSY T0318 202 :SKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1gytA 218 :VITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNAS T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1gytA 262 :ARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDL 1gytA 367 :ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEY T0318 411 :FGDLKSSIADMKNSNL 1gytA 427 :QEQLESNFADMANIGG T0318 430 :DGPPSAVAGLLIGAHIG 1gytA 443 :RPGGAITAGCFLSRFTR T0318 450 :GLRWLHLDIAAPAEVGDRGTGYGPALFSTLLGKYTSV 1gytA 460 :KYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNR Number of specific fragments extracted= 9 number of extra gaps= 0 total=565 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rtqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0318 read from 1rtqA/merged-good-all-a2m # 1rtqA read from 1rtqA/merged-good-all-a2m # found chain 1rtqA in training set Warning: unaligning (T0318)L261 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 Warning: unaligning (T0318)Q262 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)H105 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)D118 Warning: unaligning (T0318)I304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rtqA)A150 Warning: unaligning (T0318)V305 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rtqA)A150 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)N182 T0318 92 :SIYKELKPI 1rtqA 9 :TVTAWLPQV T0318 116 :EYPDVLSHVAAIARTFCKFSMK 1rtqA 18 :DASQITGTISSLESFTNRFYTT T0318 171 :RETARL 1rtqA 40 :TSGAQA T0318 186 :TDALVDEAVKVGNATG 1rtqA 46 :SDWIASEWQALSASLP T0318 202 :SKITVI 1rtqA 63 :ASVKQV T0318 225 :KAGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1rtqA 69 :SHSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGG 1rtqA 100 :STIG T0318 263 :IKTKTGMPNMK 1rtqA 106 :TNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGF 1rtqA 119 :ASGIAAVTEVIRVLSENNF T0318 295 :SQTLHACLC 1rtqA 140 :KRSIAFMAY T0318 306 :EN 1rtqA 151 :EE T0318 336 :EGR 1rtqA 156 :RGS T0318 343 :DGVFYAKET 1rtqA 160 :DLANQYKSE T0318 353 :KAT 1rtqA 169 :GKN T0318 356 :TIFDMAT 1rtqA 174 :SALQLDM T0318 365 :G 1rtqA 183 :Y T0318 371 :SGRLHGAAM 1rtqA 184 :KGSAQDVVF T0318 380 :TNDEQLENEIIKAGKA 1rtqA 196 :YTDSNFTQYLTQLMDE T0318 410 :FFGDLK 1rtqA 212 :YLPSLT T0318 424 :SNLGKMDGPPSAVAGLL 1rtqA 218 :YGFDTCGYACSDHASWH T0318 448 :GEGLRWL 1rtqA 235 :NAGYPAA T0318 460 :APA 1rtqA 242 :MPF T0318 467 :RGTGYGPALFSTLLGK 1rtqA 266 :DPTGSHAKKFTQLGLA Number of specific fragments extracted= 23 number of extra gaps= 4 total=588 Number of alignments=34 # 1rtqA read from 1rtqA/merged-good-all-a2m # found chain 1rtqA in training set Warning: unaligning (T0318)L261 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 Warning: unaligning (T0318)Q262 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)H105 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)D118 Warning: unaligning (T0318)I304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rtqA)A150 Warning: unaligning (T0318)V305 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rtqA)A150 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)N182 T0318 168 :ESVRETARLIDTPANIL 1rtqA 21 :QITGTISSLESFTNRFY T0318 186 :TDALVDEAVKVGNATG 1rtqA 46 :SDWIASEWQALSASLP T0318 202 :SKITVI 1rtqA 63 :ASVKQV T0318 225 :KAGPTPPAFVVLSHEVPGSTEHIALVGKGVV 1rtqA 69 :SHSGYNQKSVVMTITGSEAPDEWIVIGGHLD T0318 257 :DTGG 1rtqA 100 :STIG T0318 263 :IKTKTGMPNMK 1rtqA 106 :TNEQSVAPGAD T0318 276 :MGGAAGMLEAYSALVKHGFS 1rtqA 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLC 1rtqA 141 :RSIAFMAY T0318 306 :EN 1rtqA 151 :EE T0318 336 :EGR 1rtqA 156 :RGS T0318 343 :DGVFYAKET 1rtqA 160 :DLANQYKSE T0318 353 :KAT 1rtqA 169 :GKN T0318 356 :TIFDMAT 1rtqA 174 :SALQLDM T0318 370 :LSGRLHGAAM 1rtqA 183 :YKGSAQDVVF T0318 380 :TNDEQLENEIIKAGKA 1rtqA 196 :YTDSNFTQYLTQLMDE T0318 410 :FFGDLK 1rtqA 212 :YLPSLT T0318 425 :NLGKMDGPPSAVAGLL 1rtqA 219 :GFDTCGYACSDHASWH T0318 449 :EGLRW 1rtqA 236 :AGYPA T0318 459 :AAPAEVGD 1rtqA 241 :AMPFESKF T0318 467 :RGTGYGPALFSTLLGK 1rtqA 266 :DPTGSHAKKFTQLGLA Number of specific fragments extracted= 20 number of extra gaps= 4 total=608 Number of alignments=35 # 1rtqA read from 1rtqA/merged-good-all-a2m # found chain 1rtqA in training set Warning: unaligning (T0318)T267 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)H105 Warning: unaligning (T0318)G268 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)H105 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)D118 Warning: unaligning (T0318)I304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rtqA)A150 Warning: unaligning (T0318)V305 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rtqA)A150 Warning: unaligning (T0318)L363 because of BadResidue code BAD_PEPTIDE in next template residue (1rtqA)N182 Warning: unaligning (T0318)T364 because of BadResidue code BAD_PEPTIDE at template residue (1rtqA)N182 T0318 157 :N 1rtqA 19 :A T0318 167 :SESVRETARLIDTPANILTTDALVD 1rtqA 20 :SQITGTISSLESFTNRFYTTTSGAQ T0318 192 :EAVKVGNAT 1rtqA 48 :WIASEWQAL T0318 201 :GSKITVIR 1rtqA 62 :NASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 1rtqA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTK 1rtqA 98 :LDSTIG T0318 269 :MPN 1rtqA 106 :TNE T0318 272 :MK 1rtqA 115 :AD T0318 276 :MGGAAGMLEAYSALVKHGFS 1rtqA 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QTLHACLC 1rtqA 141 :RSIAFMAY T0318 306 :ENN 1rtqA 151 :EEV T0318 310 :SP 1rtqA 154 :GL T0318 343 :DGVFYAKET 1rtqA 160 :DLANQYKSE T0318 352 :LKATTIFDMAT 1rtqA 170 :KNVVSALQLDM T0318 371 :SGRLHGAAMTND 1rtqA 184 :KGSAQDVVFITD T0318 383 :EQLENEIIKAGKAS 1rtqA 199 :SNFTQYLTQLMDEY T0318 414 :LKSSIADMKNSNL 1rtqA 213 :LPSLTYGFDTCGY T0318 430 :DGPPS 1rtqA 226 :ACSDH T0318 438 :GLLIG 1rtqA 231 :ASWHN T0318 449 :EGLRWLHLDIAAPAE 1rtqA 236 :AGYPAAMPFESKFND T0318 464 :VGDRGTGYGPALFSTLLGKYTSV 1rtqA 256 :HTTQDTLANSDPTGSHAKKFTQL Number of specific fragments extracted= 21 number of extra gaps= 4 total=629 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2anpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2anpA expands to /projects/compbio/data/pdb/2anp.pdb.gz 2anpA:# T0318 read from 2anpA/merged-good-all-a2m # 2anpA read from 2anpA/merged-good-all-a2m # adding 2anpA to template set # found chain 2anpA in template set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (2anpA)D118 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (2anpA)D118 T0318 166 :LSESVRETARLIDTPANILT 2anpA 19 :ASQITGTISSLESFTNRFYT T0318 186 :TDALVDEAVKVGNATG 2anpA 46 :SDWIASEWQALSASLP T0318 202 :SKITVIR 2anpA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 2anpA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTKTGMPN 2anpA 98 :LDSTIGSHTNE T0318 272 :MK 2anpA 115 :AD T0318 276 :MGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSP 2anpA 119 :ASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAHEVG T0318 342 :A 2anpA 158 :S T0318 343 :DGVFYAKET 2anpA 160 :DLANQYKSE T0318 352 :LKATTIFDMATLT 2anpA 170 :KNVVSALQLDMTN T0318 370 :LSGRLHGAAMTND 2anpA 183 :YKGSAQDVVFITD T0318 383 :EQLENEIIKAGKAS 2anpA 199 :SNFTQYLTQLMDEY T0318 411 :FGDLK 2anpA 213 :LPSLT T0318 424 :SNLGKMDGPPSAVAGLL 2anpA 218 :YGFDTCGYACSDHASWH T0318 448 :GEGLRWLHLDIAAP 2anpA 235 :NAGYPAAMPFESKF T0318 467 :RGTGYGPALFSTLLGK 2anpA 266 :DPTGSHAKKFTQLGLA Number of specific fragments extracted= 16 number of extra gaps= 1 total=645 Number of alignments=37 # 2anpA read from 2anpA/merged-good-all-a2m # found chain 2anpA in template set Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (2anpA)D118 T0318 157 :NEDAVFLTD 2anpA 7 :QATVTAWLP T0318 166 :LSESVRETARLIDTPANILTTDALV 2anpA 19 :ASQITGTISSLESFTNRFYTTTSGA T0318 191 :DEAVKVGNAT 2anpA 47 :DWIASEWQAL T0318 201 :G 2anpA 61 :P T0318 202 :SKITVIR 2anpA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 2anpA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTKTGMPNMKR 2anpA 98 :LDSTIGSHTNEQSV T0318 276 :MGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPI 2anpA 119 :ASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAHEVGL T0318 343 :DGVFYAKET 2anpA 160 :DLANQYKSE T0318 352 :LKATTIFDMATLT 2anpA 170 :KNVVSALQLDMTN T0318 370 :LSGRLHGAAMTND 2anpA 183 :YKGSAQDVVFITD T0318 383 :EQLENEIIKAGKA 2anpA 199 :SNFTQYLTQLMDE T0318 413 :DLKSSIADMKNS 2anpA 212 :YLPSLTYGFDTC T0318 428 :KMDGPPSAVAG 2anpA 224 :GYACSDHASWH T0318 448 :GEGLRWL 2anpA 235 :NAGYPAA T0318 461 :PAEVGD 2anpA 242 :MPFESK T0318 467 :RGTGYGPALFSTLLGK 2anpA 266 :DPTGSHAKKFTQLGLA Number of specific fragments extracted= 17 number of extra gaps= 1 total=662 Number of alignments=38 # 2anpA read from 2anpA/merged-good-all-a2m # found chain 2anpA in template set Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (2anpA)D118 T0318 166 :LSESVRETARLIDTPANILT 2anpA 19 :ASQITGTISSLESFTNRFYT T0318 186 :TDALVDEAVKVGNATG 2anpA 46 :SDWIASEWQALSASLP T0318 202 :SKITVIR 2anpA 63 :ASVKQVS T0318 226 :AGPTPPAFVVLSHEVPGSTEHIALVGKG 2anpA 70 :HSGYNQKSVVMTITGSEAPDEWIVIGGH T0318 261 :LQIKTKTGMPNMKR 2anpA 98 :LDSTIGSHTNEQSV T0318 276 :MGGAAGMLEAYSALVKHGFS 2anpA 119 :ASGIAAVTEVIRVLSENNFQ T0318 296 :QT 2anpA 141 :RS T0318 299 :HACLCIVENNVSPI 2anpA 143 :IAFMAYAAHEVGLR T0318 343 :DGVFYAKET 2anpA 160 :DLANQYKSE T0318 352 :LKATTIFDMATLT 2anpA 170 :KNVVSALQLDMTN T0318 372 :GRLHGAAMTND 2anpA 185 :GSAQDVVFITD T0318 383 :EQLENEIIKAG 2anpA 199 :SNFTQYLTQLM T0318 411 :FGDLKSSIADMKNSNL 2anpA 210 :DEYLPSLTYGFDTCGY T0318 430 :DGPPS 2anpA 226 :ACSDH T0318 438 :GLLIG 2anpA 231 :ASWHN T0318 449 :EGLRWLHLDIAAPAE 2anpA 236 :AGYPAAMPFESKFND T0318 464 :VGDRGTGYGPALFSTLLGKYTSV 2anpA 256 :HTTQDTLANSDPTGSHAKKFTQL Number of specific fragments extracted= 17 number of extra gaps= 1 total=679 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tf9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tf9A expands to /projects/compbio/data/pdb/1tf9.pdb.gz 1tf9A:Skipped atom 14, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 16, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 18, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 20, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 22, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 24, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 26, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 28, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 77, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 79, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 81, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 83, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 85, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 340, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 342, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 344, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 346, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 348, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 438, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 440, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 442, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 444, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 446, because occupancy 0.400 <= existing 0.600 in 1tf9A Skipped atom 625, because occupancy 0.220 <= existing 0.780 in 1tf9A Skipped atom 627, because occupancy 0.220 <= existing 0.780 in 1tf9A Skipped atom 629, because occupancy 0.220 <= existing 0.780 in 1tf9A Skipped atom 631, because occupancy 0.220 <= existing 0.780 in 1tf9A Skipped atom 696, because occupancy 0.230 <= existing 0.770 in 1tf9A Skipped atom 698, because occupancy 0.230 <= existing 0.770 in 1tf9A Skipped atom 841, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 843, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 845, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 847, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 849, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 851, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 853, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1051, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1053, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1055, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1057, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1059, because occupancy 0.320 <= existing 0.680 in 1tf9A Skipped atom 1126, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1128, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1147, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1149, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1151, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1153, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1155, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1157, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1159, because occupancy 0.380 <= existing 0.620 in 1tf9A Skipped atom 1165, because occupancy 0.370 <= existing 0.630 in 1tf9A Skipped atom 1167, because occupancy 0.370 <= existing 0.630 in 1tf9A Skipped atom 1400, because occupancy 0.460 <= existing 0.540 in 1tf9A Skipped atom 1402, because occupancy 0.460 <= existing 0.540 in 1tf9A Skipped atom 1404, because occupancy 0.460 <= existing 0.540 in 1tf9A Skipped atom 1406, because occupancy 0.460 <= existing 0.540 in 1tf9A Skipped atom 1408, because occupancy 0.460 <= existing 0.540 in 1tf9A Skipped atom 1432, because occupancy 0.430 <= existing 0.570 in 1tf9A Skipped atom 1434, because occupancy 0.430 <= existing 0.570 in 1tf9A Skipped atom 1436, because occupancy 0.430 <= existing 0.570 in 1tf9A Skipped atom 1438, because occupancy 0.430 <= existing 0.570 in 1tf9A Skipped atom 1440, because occupancy 0.430 <= existing 0.570 in 1tf9A Skipped atom 1494, because occupancy 0.340 <= existing 0.660 in 1tf9A Skipped atom 1496, because occupancy 0.340 <= existing 0.660 in 1tf9A Skipped atom 1498, because occupancy 0.340 <= existing 0.660 in 1tf9A Skipped atom 1500, because occupancy 0.340 <= existing 0.660 in 1tf9A Skipped atom 1924, because occupancy 0.280 <= existing 0.720 in 1tf9A Skipped atom 1926, because occupancy 0.280 <= existing 0.720 in 1tf9A Skipped atom 1960, because occupancy 0.310 <= existing 0.690 in 1tf9A Skipped atom 1962, because occupancy 0.310 <= existing 0.690 in 1tf9A # T0318 read from 1tf9A/merged-good-all-a2m # 1tf9A read from 1tf9A/merged-good-all-a2m # adding 1tf9A to template set # found chain 1tf9A in template set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tf9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tf9A)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tf9A)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)G168 Warning: unaligning (T0318)A406 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tf9A)R202 Warning: unaligning (T0318)K428 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tf9A)R202 T0318 153 :DKLTNEDAVF 1tf9A 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1tf9A 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1tf9A 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHEV 1tf9A 58 :TSGGATGYNLIANWPG T0318 243 :S 1tf9A 74 :G T0318 244 :TEHIALVGKGVV 1tf9A 76 :PNKVLMAGAHLD T0318 265 :TKTGMPNMK 1tf9A 88 :SVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tf9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tf9A 121 :KHLRFAWWGAEEL T0318 317 :DD 1tf9A 134 :GL T0318 343 :DGVFYAKETLK 1tf9A 136 :IGSKFYVNNLP T0318 354 :ATTIFDMATL 1tf9A 153 :LAGYLNFDMI T0318 370 :LSG 1tf9A 163 :GSP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLF 1tf9A 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETE T0318 429 :MDG 1tf9A 203 :SDH T0318 442 :GAHI 1tf9A 206 :APFK T0318 448 :GEGLRWLHLDIAAP 1tf9A 210 :NVGVPVGGLFTGAG T0318 464 :VGD 1tf9A 247 :HSS T0318 467 :RGTG 1tf9A 255 :NIND T0318 471 :YGPALFSTLLGKYT 1tf9A 263 :RNSDAAAHAIWTLS Number of specific fragments extracted= 20 number of extra gaps= 2 total=699 Number of alignments=40 # 1tf9A read from 1tf9A/merged-good-all-a2m # found chain 1tf9A in template set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tf9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tf9A)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tf9A)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)G168 Warning: unaligning (T0318)K428 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tf9A)R202 Warning: unaligning (T0318)G431 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tf9A)R202 T0318 153 :DKLTNEDAVF 1tf9A 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1tf9A 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1tf9A 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHEV 1tf9A 58 :TSGGATGYNLIANWPG T0318 244 :TEHIALVGKGV 1tf9A 76 :PNKVLMAGAHL T0318 264 :KTKTGMPNMK 1tf9A 87 :DSVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tf9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tf9A 121 :KHLRFAWWGAEEL T0318 317 :DD 1tf9A 134 :GL T0318 343 :DGVFYAKETLK 1tf9A 136 :IGSKFYVNNLP T0318 354 :ATTIFDMATL 1tf9A 153 :LAGYLNFDMI T0318 370 :LSG 1tf9A 163 :GSP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLF 1tf9A 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETE T0318 432 :PPS 1tf9A 203 :SDH T0318 442 :GAHIG 1tf9A 206 :APFKN T0318 449 :EGLRWL 1tf9A 211 :VGVPVG Number of specific fragments extracted= 16 number of extra gaps= 2 total=715 Number of alignments=41 # 1tf9A read from 1tf9A/merged-good-all-a2m # found chain 1tf9A in template set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1tf9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1tf9A)N98 Warning: unaligning (T0318)R373 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tf9A)P167 Warning: unaligning (T0318)L374 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)P167 Warning: unaligning (T0318)H375 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tf9A)G168 T0318 153 :DKLTNEDAVFL 1tf9A 2 :PDIPLANVKAH T0318 166 :LSESVRETARLIDT 1tf9A 13 :LTQLSTIAANNGGN T0318 180 :PANILTTDALVDEAVKVGNATGSKITVIR 1tf9A 28 :AHGRPGYKASVDYVKAKLDAAGYTTTLQQ T0318 226 :AGPTPPAFVVLSH 1tf9A 59 :SGGATGYNLIANW T0318 242 :GS 1tf9A 72 :PG T0318 244 :TEHIALVGKG 1tf9A 76 :PNKVLMAGAH T0318 263 :IKTKTGMPNMK 1tf9A 86 :LDSVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1tf9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1tf9A 121 :KHLRFAWWGAEEL T0318 343 :DGVFYAKET 1tf9A 136 :IGSKFYVNN T0318 352 :LKATTIFDMATLT 1tf9A 151 :SKLAGYLNFDMIG T0318 371 :SG 1tf9A 164 :SP T0318 376 :GAAMTNDEQLENEIIKAGKASGDLVAPMLF 1tf9A 169 :YFVYDDDPVIEKTFKNYFAGLNVPTEIETE Number of specific fragments extracted= 13 number of extra gaps= 2 total=728 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xjo/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xjo expands to /projects/compbio/data/pdb/1xjo.pdb.gz 1xjo:Warning: there is no chain 1xjo will retry with 1xjoA # T0318 read from 1xjo/merged-good-all-a2m # 1xjo read from 1xjo/merged-good-all-a2m # adding 1xjo to template set # found chain 1xjo in template set Warning: unaligning (T0318)K273 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xjo)D97 Warning: unaligning (T0318)R274 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)D97 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1xjo)N98 Warning: unaligning (T0318)A361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)I162 Warning: unaligning (T0318)L363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)I162 Warning: unaligning (T0318)P402 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)R202 Warning: unaligning (T0318)K415 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)R202 Warning: unaligning (T0318)S416 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)S203 T0318 153 :DKLTNEDAVF 1xjo 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1xjo 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1xjo 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHEV 1xjo 58 :TSGGATGYNLIANWPG T0318 242 :G 1xjo 74 :G T0318 244 :TEHIALVGKGVVYDTGGLQ 1xjo 76 :PNKVLMAGAHLDSVSSGAG T0318 272 :M 1xjo 95 :I T0318 276 :MGGAAGMLEAYSALVKHGFS 1xjo 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1xjo 121 :KHLRFAWWGAEEL T0318 317 :DD 1xjo 134 :GL T0318 343 :DGVFYAKETLK 1xjo 136 :IGSKFYVNNLP T0318 354 :ATTIFDM 1xjo 153 :LAGYLNF T0318 370 :LSGRLHGAAMTNDEQLENEIIKAGKASGDLVA 1xjo 163 :GSPNPGYFVYDDDPVIEKTFKNYFAGLNVPTE T0318 417 :SIADMKNSNL 1xjo 204 :DHAPFKNVGV Number of specific fragments extracted= 14 number of extra gaps= 1 total=742 Number of alignments=43 # 1xjo read from 1xjo/merged-good-all-a2m # found chain 1xjo in template set Warning: unaligning (T0318)K273 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xjo)D97 Warning: unaligning (T0318)R274 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)D97 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1xjo)N98 Warning: unaligning (T0318)A361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)I162 Warning: unaligning (T0318)L363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)I162 Warning: unaligning (T0318)P402 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)R202 Warning: unaligning (T0318)G431 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)R202 Warning: unaligning (T0318)P432 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)S203 T0318 153 :DKLTNEDAVF 1xjo 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1xjo 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1xjo 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHEV 1xjo 58 :TSGGATGYNLIANWPG T0318 244 :TEHIALVGKGVVYDTGGL 1xjo 76 :PNKVLMAGAHLDSVSSGA T0318 271 :NM 1xjo 94 :GI T0318 276 :MGGAAGMLEAYSALVKHGFS 1xjo 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1xjo 121 :KHLRFAWWGAEEL T0318 317 :DD 1xjo 134 :GL T0318 343 :DGVFYAKETLK 1xjo 136 :IGSKFYVNNLP T0318 354 :ATTIFDM 1xjo 153 :LAGYLNF T0318 370 :LSGRLHGAAMTNDEQLENEIIKAGKASGDLVA 1xjo 163 :GSPNPGYFVYDDDPVIEKTFKNYFAGLNVPTE T0318 433 :PS 1xjo 204 :DH T0318 442 :GAHIGFG 1xjo 206 :APFKNVG Number of specific fragments extracted= 14 number of extra gaps= 1 total=756 Number of alignments=44 # 1xjo read from 1xjo/merged-good-all-a2m # found chain 1xjo in template set Warning: unaligning (T0318)K273 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xjo)D97 Warning: unaligning (T0318)R274 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)D97 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1xjo)N98 Warning: unaligning (T0318)A361 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)I162 Warning: unaligning (T0318)L363 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)I162 Warning: unaligning (T0318)P402 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xjo)R202 Warning: unaligning (T0318)G431 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xjo)R202 Warning: unaligning (T0318)P432 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xjo)S203 T0318 153 :DKLTNEDAVFL 1xjo 2 :PDIPLANVKAH T0318 166 :LSESVRETARLIDTPA 1xjo 13 :LTQLSTIAANNGGNRA T0318 182 :NILTTDALVDEAVKVGNATGSKITVIR 1xjo 30 :GRPGYKASVDYVKAKLDAAGYTTTLQQ T0318 226 :AGPTPPAFVVLSH 1xjo 59 :SGGATGYNLIANW T0318 242 :GS 1xjo 72 :PG T0318 244 :TEHIALVGKG 1xjo 76 :PNKVLMAGAH T0318 263 :IKTKTGMPNM 1xjo 86 :LDSVSSGAGI T0318 276 :MGGAAGMLEAYSALVKHGFS 1xjo 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1xjo 121 :KHLRFAWWGAEEL T0318 343 :DGVFYAKET 1xjo 136 :IGSKFYVNN T0318 352 :LKATTIFDM 1xjo 151 :SKLAGYLNF T0318 364 :T 1xjo 163 :G T0318 371 :SGRLHGAAMTNDEQLENEIIKAGKASGDLVA 1xjo 164 :SPNPGYFVYDDDPVIEKTFKNYFAGLNVPTE T0318 433 :P 1xjo 204 :D T0318 441 :IGAHIG 1xjo 205 :HAPFKN T0318 449 :EGLRWLHL 1xjo 211 :VGVPVGGL Number of specific fragments extracted= 16 number of extra gaps= 1 total=772 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cg2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cg2A expands to /projects/compbio/data/pdb/1cg2.pdb.gz 1cg2A:# T0318 read from 1cg2A/merged-good-all-a2m # 1cg2A read from 1cg2A/merged-good-all-a2m # adding 1cg2A to template set # found chain 1cg2A in template set Warning: unaligning (T0318)D153 because first residue in template chain is (1cg2A)Q26 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1cg2A)D142 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1cg2A)D142 T0318 154 :KLTNEDAVFLTDL 1cg2A 27 :KRDNVLFQAATDE T0318 167 :SESVRETARLIDTPANILTTD 1cg2A 41 :PAVIKTLEKLVNIETGTGDAE T0318 188 :ALVDEAVKVGNATGSKITVIR 1cg2A 65 :AAGNFLEAELKNLGFTVTRSK T0318 225 :KAGPTPPAFVVLSHEVPGSTEHIALVGKGVVY 1cg2A 86 :SAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVY T0318 261 :LQIKTKTG 1cg2A 125 :APFRVEGD T0318 269 :MPNMK 1cg2A 136 :GPGIA T0318 276 :MGGAAGMLEAYSALVKHGFS 1cg2A 143 :KGGNAVILHTLKLLKEYGVR T0318 325 :GKTVEINNTDAE 1cg2A 165 :GTITVLFNTDEE T0318 342 :ADGVFYAKET 1cg2A 183 :RDLIQEEAKL T0318 354 :ATTIFDMA 1cg2A 193 :ADYVLSFE Number of specific fragments extracted= 10 number of extra gaps= 1 total=782 Number of alignments=46 # 1cg2A read from 1cg2A/merged-good-all-a2m # found chain 1cg2A in template set Warning: unaligning (T0318)D153 because first residue in template chain is (1cg2A)Q26 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1cg2A)D142 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1cg2A)D142 T0318 154 :KLTNEDAVFLTDL 1cg2A 27 :KRDNVLFQAATDE T0318 167 :SESVRETARLIDTPANILTTD 1cg2A 41 :PAVIKTLEKLVNIETGTGDAE T0318 188 :ALVDEAVKVGNATGSKITVIR 1cg2A 65 :AAGNFLEAELKNLGFTVTRSK T0318 225 :KAGPTPPAFVVLSHEVPGSTEHIALVGKGVVY 1cg2A 86 :SAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVY T0318 261 :LQIKTKTG 1cg2A 125 :APFRVEGD T0318 269 :MPNMK 1cg2A 136 :GPGIA T0318 276 :MGGAAGMLEAYSALVKHGFS 1cg2A 143 :KGGNAVILHTLKLLKEYGVR T0318 325 :GKTVEINNTDAE 1cg2A 165 :GTITVLFNTDEE T0318 342 :ADGVFYAKET 1cg2A 183 :RDLIQEEAKL T0318 354 :ATTIFDMAT 1cg2A 193 :ADYVLSFEP Number of specific fragments extracted= 10 number of extra gaps= 1 total=792 Number of alignments=47 # 1cg2A read from 1cg2A/merged-good-all-a2m # found chain 1cg2A in template set Warning: unaligning (T0318)D153 because first residue in template chain is (1cg2A)Q26 Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1cg2A)D142 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1cg2A)D142 T0318 154 :KLTNEDAVFLTDL 1cg2A 27 :KRDNVLFQAATDE T0318 167 :SESVRETARLIDTPANILTTD 1cg2A 41 :PAVIKTLEKLVNIETGTGDAE T0318 188 :ALVDEAVKVGNATGSKITVIR 1cg2A 65 :AAGNFLEAELKNLGFTVTRSK T0318 225 :KAGPTPPAFVVLSHEVPGS 1cg2A 86 :SAGLVVGDNIVGKIKGRGG T0318 245 :EHIALVGK 1cg2A 105 :KNLLLMSH T0318 267 :TGM 1cg2A 119 :KGI T0318 270 :PNMK 1cg2A 137 :PGIA T0318 276 :MGGAAGMLEAYSALVKHGFS 1cg2A 143 :KGGNAVILHTLKLLKEYGVR T0318 325 :GKTVEINNTDAE 1cg2A 165 :GTITVLFNTDEE T0318 342 :ADGVFYAKE 1cg2A 183 :RDLIQEEAK T0318 353 :KATTIFDMA 1cg2A 192 :LADYVLSFE Number of specific fragments extracted= 11 number of extra gaps= 1 total=803 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lam/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0318 read from 1lam/merged-good-all-a2m # 1lam read from 1lam/merged-good-all-a2m # found chain 1lam in training set T0318 16 :GLTSLIIVGKKSVLKNVT 1lam 2 :KGLVLGIYSKEKEEDEPQ T0318 34 :FEGKFKEVAQKFVTDGDSWNSMISRIPASGRH 1lam 27 :FNKLVSGKLREILNISGPPLKAGKTRTFYGLH T0318 66 :PLHYELAHLITVPDAS 1lam 60 :DFPSVVVVGLGKKTAG T0318 82 :SRGN 1lam 78 :EQEN T0318 86 :TPTNAHSIYKELKPINYP 1lam 89 :IRAAVAAGCRQIQDLEIP T0318 111 :FVLFAEYPDVLSHVAAIARTFCKFSMKTSGIR 1lam 107 :SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRK T0318 144 :LNVNID 1lam 139 :VVVSAK T0318 151 :VCDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lam 145 :LHGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEV 1lam 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKG T0318 241 :PGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lam 239 :NASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDG 1lam 347 :HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAG T0318 434 :SAVAGLLIGAHIGFG 1lam 429 :ACTAAAFLKEFVTHP T0318 452 :RWLHLDIAAPA 1lam 444 :KWAHLDIAGVM T0318 463 :EVGDRGTGYGPALFSTLLGKY 1lam 462 :YLRKGMAGRPTRTLIEFLFRF Number of specific fragments extracted= 14 number of extra gaps= 0 total=817 Number of alignments=49 # 1lam read from 1lam/merged-good-all-a2m # found chain 1lam in training set T0318 10 :IQAVG 1lam 8 :IYSKE T0318 15 :DGLTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISR 1lam 16 :DEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE T0318 60 :PASGRHPLHYELAHL 1lam 60 :DFPSVVVVGLGKKTA T0318 76 :TVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFS 1lam 75 :GIDEQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLK T0318 138 :TSGIRELNVNI 1lam 135 :QKRKVVVSAKL T0318 152 :CDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lam 146 :HGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEV 1lam 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKG T0318 241 :PGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lam 239 :NASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSN 1lam 347 :HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIG T0318 428 :KMDGPPSAVAGLLIGAHIGFG 1lam 423 :KYRSAGACTAAAFLKEFVTHP T0318 452 :RWLHLDIAAPAEVGD 1lam 444 :KWAHLDIAGVMTNKD T0318 467 :RGTGYGPALFSTLLGKYT 1lam 466 :GMAGRPTRTLIEFLFRFS Number of specific fragments extracted= 12 number of extra gaps= 0 total=829 Number of alignments=50 # 1lam read from 1lam/merged-good-all-a2m # found chain 1lam in training set T0318 15 :DGLTSLIIVGKKSVLKNVTFEGKFKEVAQ 1lam 16 :DEPQFTSAGENFNKLVSGKLREILNISGP T0318 45 :FVTDGDSWNSMISRIPASGRHPLHYELAHLIT 1lam 45 :PLKAGKTRTFYGLHEDFPSVVVVGLGKKTAGI T0318 77 :VPDASSRGNTPTNAHSIYKELKPI 1lam 83 :HEGKENIRAAVAAGCRQIQDLEIP T0318 108 :NVHFVLFAEYPDVLSHVAAIARTFCKFSM 1lam 107 :SVEVDPCGDAQAAAEGAVLGLYEYDDLKQ T0318 139 :SG 1lam 136 :KR T0318 143 :ELNVN 1lam 138 :KVVVS T0318 149 :DVVCDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lam 143 :AKLHGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1lam 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lam 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNL 1lam 347 :HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGK T0318 429 :MDGPPSAVAGLLIGAHIG 1lam 424 :YRSAGACTAAAFLKEFVT T0318 450 :GLRWLHLDIAAPAEVGDRGTGYGPALFSTLLGKYTSVP 1lam 442 :HPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFL Number of specific fragments extracted= 12 number of extra gaps= 0 total=841 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ebdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ebdA expands to /projects/compbio/data/pdb/1ebd.pdb.gz 1ebdA:# T0318 read from 1ebdA/merged-good-all-a2m # 1ebdA read from 1ebdA/merged-good-all-a2m # adding 1ebdA to template set # found chain 1ebdA in template set T0318 70 :ELAHLIT 1ebdA 12 :TLVVGAG T0318 88 :TNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSMKTS 1ebdA 19 :PGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKH T0318 140 :GIRELNVN 1ebdA 77 :KAENVTID T0318 166 :LSESVRETARLI 1ebdA 85 :FAKVQEWKASVV T0318 187 :DALVDEAVKVGNATGSKITVIR 1ebdA 97 :KKLTGGVEGLLKGNKVEIVKGE T0318 232 :AFV 1ebdA 120 :YFV T0318 235 :VLSHEVPGSTEHIA 1ebdA 126 :TVRVVNGDSAQTYT T0318 251 :GKGVVYDTGGLQIKTKTG 1ebdA 140 :FKNAIIATGSRPIELPNF T0318 269 :MPNMKRDMGGA 1ebdA 159 :FSNRILDSTGA T0318 292 :HGFS 1ebdA 170 :LNLG T0318 296 :QTLHACLC 1ebdA 177 :KSLVVIGG T0318 337 :GRLILADGVFYA 1ebdA 185 :GYIGIELGTAYA T0318 351 :TLKATTIFDMAT 1ebdA 197 :NFGTKVTILEGA T0318 372 :GRLHGAA 1ebdA 209 :GEILSGF T0318 382 :DEQLENEIIKAGKASG 1ebdA 216 :EKQMAAIIKKRLKKKG Number of specific fragments extracted= 15 number of extra gaps= 0 total=856 Number of alignments=52 # 1ebdA read from 1ebdA/merged-good-all-a2m # found chain 1ebdA in template set T0318 110 :HFVLFAEYPDVLSHVAAIARTFCKFSMKTSGIREL 1ebdA 44 :GGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA T0318 145 :NVNID 1ebdA 80 :NVTID T0318 166 :LSESVRETARLI 1ebdA 85 :FAKVQEWKASVV T0318 187 :DALVDEAVKVGNATGSKITVIR 1ebdA 97 :KKLTGGVEGLLKGNKVEIVKGE T0318 231 :PAFV 1ebdA 119 :AYFV T0318 235 :VLSHEVPGSTEHIAL 1ebdA 126 :TVRVVNGDSAQTYTF T0318 252 :KGVVYDTGGLQIKTKTG 1ebdA 141 :KNAIIATGSRPIELPNF T0318 269 :MPNMKRDMGGA 1ebdA 159 :FSNRILDSTGA T0318 292 :HGFS 1ebdA 170 :LNLG T0318 296 :QTLHACLC 1ebdA 177 :KSLVVIGG T0318 337 :GRLILADGVFYA 1ebdA 185 :GYIGIELGTAYA T0318 351 :TLKATTIFDMAT 1ebdA 197 :NFGTKVTILEGA T0318 372 :GRLHGAA 1ebdA 209 :GEILSGF T0318 382 :DEQLENEIIKAGKASG 1ebdA 216 :EKQMAAIIKKRLKKKG Number of specific fragments extracted= 14 number of extra gaps= 0 total=870 Number of alignments=53 # 1ebdA read from 1ebdA/merged-good-all-a2m # found chain 1ebdA in template set T0318 88 :TNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSMKTSGI 1ebdA 22 :YVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMG T0318 143 :ELNVNIDVVCDKLTNEDAVFLTDL 1ebdA 76 :IKAENVTIDFAKVQEWKASVVKKL T0318 190 :VDEAVKVGNATGSKITVIR 1ebdA 100 :TGGVEGLLKGNKVEIVKGE T0318 232 :AF 1ebdA 120 :YF T0318 235 :VLSHEVPGSTEHIAL 1ebdA 126 :TVRVVNGDSAQTYTF T0318 252 :KGVVYDTGGLQIKTKTG 1ebdA 141 :KNAIIATGSRPIELPNF T0318 269 :MPNMKRDMGGA 1ebdA 159 :FSNRILDSTGA T0318 292 :HGFS 1ebdA 170 :LNLG T0318 296 :QTLHACLC 1ebdA 177 :KSLVVIGG T0318 337 :GRLILADGVFYA 1ebdA 185 :GYIGIELGTAYA T0318 351 :TLKATTIFDMAT 1ebdA 197 :NFGTKVTILEGA T0318 372 :GRLHGAA 1ebdA 209 :GEILSGF T0318 382 :DEQLENEIIKAGKASG 1ebdA 216 :EKQMAAIIKKRLKKKG Number of specific fragments extracted= 13 number of extra gaps= 0 total=883 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lap/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lap expands to /projects/compbio/data/pdb/1lap.pdb.gz 1lap:Warning: there is no chain 1lap will retry with 1lapA # T0318 read from 1lap/merged-good-all-a2m # 1lap read from 1lap/merged-good-all-a2m # adding 1lap to template set # found chain 1lap in template set Warning: unaligning (T0318)D15 because first residue in template chain is (1lap)T1 Warning: unaligning (T0318)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lap)E15 Warning: unaligning (T0318)K26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lap)E15 Warning: unaligning (T0318)N31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)P18 Warning: unaligning (T0318)V32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)P18 Warning: unaligning (T0318)C132 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)E129 Warning: unaligning (T0318)K133 because of BadResidue code BAD_PEPTIDE at template residue (1lap)E129 Warning: unaligning (T0318)L155 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)D150 Warning: unaligning (T0318)T156 because of BadResidue code BAD_PEPTIDE at template residue (1lap)D150 Warning: unaligning (T0318)L363 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)T361 Warning: unaligning (T0318)T364 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)T361 Warning: unaligning (T0318)S417 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)L415 Warning: unaligning (T0318)I418 because of BadResidue code BAD_PEPTIDE at template residue (1lap)L415 Warning: unaligning (T0318)D457 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)I450 Warning: unaligning (T0318)I458 because of BadResidue code BAD_PEPTIDE at template residue (1lap)I450 Warning: unaligning (T0318)S485 because last residue in template chain is (1lap)Q484 T0318 16 :GLTSLIIVG 1lap 2 :KGLVLGIYS T0318 30 :K 1lap 16 :D T0318 33 :T 1lap 19 :Q T0318 34 :FEGKFKEVAQKFVTDGDSWNSMISRIPASGRH 1lap 27 :FNKLVSGKLREILNISGPPLKAGKTRTFYGLH T0318 66 :PLHYELAHLITVPDAS 1lap 60 :DFPSVVVVGLGKKTAG T0318 82 :SRGN 1lap 78 :EQEN T0318 86 :TPTNAHSIYKELKPINY 1lap 89 :IRAAVAAGCRQIQDLEI T0318 110 :HFVLFAEYPDVLSHVAAIARTF 1lap 106 :PSVEVDPCGDAQAAAEGAVLGL T0318 134 :FSMKTSGI 1lap 130 :YDDLKQKR T0318 143 :ELNVNID 1lap 138 :KVVVSAK T0318 151 :VCDK 1lap 145 :LHGS T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lap 151 :QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1lap 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lap 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMAT 1lap 347 :HTFNPKVIINAAT T0318 365 :GAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKS 1lap 362 :GAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDC T0318 419 :ADMKNSNLGKMDG 1lap 416 :ADVNNIGKYRSAG T0318 434 :SAVAGLLIGAHIGFG 1lap 429 :ACTAAAFLKEFVTHP T0318 452 :RWLHL 1lap 444 :KWAHL T0318 459 :AAPAEVGD 1lap 451 :AGVMTNKD T0318 467 :RGTGYGPALFSTLLGKYT 1lap 466 :GMAGRPTRTLIEFLFRFS Number of specific fragments extracted= 21 number of extra gaps= 7 total=904 Number of alignments=55 # 1lap read from 1lap/merged-good-all-a2m # found chain 1lap in template set Warning: unaligning (T0318)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)P18 Warning: unaligning (T0318)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)P18 Warning: unaligning (T0318)R129 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)E129 Warning: unaligning (T0318)T130 because of BadResidue code BAD_PEPTIDE at template residue (1lap)E129 Warning: unaligning (T0318)L155 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)D150 Warning: unaligning (T0318)T156 because of BadResidue code BAD_PEPTIDE at template residue (1lap)D150 Warning: unaligning (T0318)L363 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)T361 Warning: unaligning (T0318)T364 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)T361 Warning: unaligning (T0318)S417 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)L415 Warning: unaligning (T0318)I418 because of BadResidue code BAD_PEPTIDE at template residue (1lap)L415 Warning: unaligning (T0318)D457 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)I450 Warning: unaligning (T0318)I458 because of BadResidue code BAD_PEPTIDE at template residue (1lap)I450 Warning: unaligning (T0318)S485 because last residue in template chain is (1lap)Q484 T0318 15 :D 1lap 16 :D T0318 18 :TSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISR 1lap 19 :QFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE T0318 60 :PASGRHPLHYE 1lap 60 :DFPSVVVVGLG T0318 71 :LAHLITVPDASSRGNTPTNAHSIYKE 1lap 78 :EQENWHEGKENIRAAVAAGCRQIQDL T0318 105 :DTKNVHFVLFAEYPDVLSHVAAIA 1lap 104 :EIPSVEVDPCGDAQAAAEGAVLGL T0318 131 :FCKF 1lap 130 :YDDL T0318 137 :KTSGIRELNVNI 1lap 134 :KQKRKVVVSAKL T0318 152 :CDK 1lap 146 :HGS T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lap 151 :QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1lap 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lap 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMAT 1lap 347 :HTFNPKVIINAAT T0318 365 :GAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKS 1lap 362 :GAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDC T0318 419 :ADMKNSN 1lap 416 :ADVNNIG T0318 428 :KMDGPPSAVAGLLIGAHIGFG 1lap 423 :KYRSAGACTAAAFLKEFVTHP T0318 452 :RWLHL 1lap 444 :KWAHL T0318 459 :AAPAEVGD 1lap 451 :AGVMTNKD T0318 467 :RGTGYGPALFSTLLGKYT 1lap 466 :GMAGRPTRTLIEFLFRFS Number of specific fragments extracted= 18 number of extra gaps= 6 total=922 Number of alignments=56 # 1lap read from 1lap/merged-good-all-a2m # found chain 1lap in template set Warning: unaligning (T0318)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)P18 Warning: unaligning (T0318)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)P18 Warning: unaligning (T0318)C132 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)E129 Warning: unaligning (T0318)K133 because of BadResidue code BAD_PEPTIDE at template residue (1lap)E129 Warning: unaligning (T0318)L155 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)D150 Warning: unaligning (T0318)T156 because of BadResidue code BAD_PEPTIDE at template residue (1lap)D150 Warning: unaligning (T0318)L363 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1lap)T361 Warning: unaligning (T0318)T364 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1lap)T361 Warning: unaligning (T0318)S417 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)L415 Warning: unaligning (T0318)I418 because of BadResidue code BAD_PEPTIDE at template residue (1lap)L415 Warning: unaligning (T0318)D457 because of BadResidue code BAD_PEPTIDE in next template residue (1lap)I450 Warning: unaligning (T0318)I458 because of BadResidue code BAD_PEPTIDE at template residue (1lap)I450 T0318 18 :TSLIIVGKKSVLKNVTFEGKFKEVAQKFV 1lap 19 :QFTSAGENFNKLVSGKLREILNISGPPLK T0318 48 :DGDSWNSMISRIPASGRHPLHYELAHLITVP 1lap 48 :AGKTRTFYGLHEDFPSVVVVGLGKKTAGIDE T0318 79 :DASSRGNTPTNAHSIYKELKPIN 1lap 85 :GKENIRAAVAAGCRQIQDLEIPS T0318 109 :VHFVLFAEYPDVLSHVAAIA 1lap 108 :VEVDPCGDAQAAAEGAVLGL T0318 134 :FSM 1lap 130 :YDD T0318 137 :KTSGIRELN 1lap 134 :KQKRKVVVS T0318 149 :DVVCDK 1lap 143 :AKLHGS T0318 157 :NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1lap 151 :QEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1lap 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1lap 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMAT 1lap 347 :HTFNPKVIINAAT T0318 365 :GAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKS 1lap 362 :GAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDC T0318 419 :ADMKNSNL 1lap 416 :ADVNNIGK T0318 429 :MDGPPSAVAGLLIGAHIG 1lap 424 :YRSAGACTAAAFLKEFVT T0318 450 :GLRWLHL 1lap 442 :HPKWAHL T0318 459 :AAPAEVGDRGTGYGPALFSTLLGKYTSVP 1lap 451 :AGVMTNKDEVPYLRKGMAGRPTRTLIEFL Number of specific fragments extracted= 16 number of extra gaps= 6 total=938 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cs0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cs0A expands to /projects/compbio/data/pdb/1cs0.pdb.gz 1cs0A:Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 220, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 442, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 4294, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 4296, because occupancy 0.500 <= existing 0.500 in 1cs0A Skipped atom 7661, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7663, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7665, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7667, because occupancy 0.500 <= existing 1.000 in 1cs0A Skipped atom 7669, because occupancy 0.500 <= existing 1.000 in 1cs0A # T0318 read from 1cs0A/merged-good-all-a2m # 1cs0A read from 1cs0A/merged-good-all-a2m # adding 1cs0A to template set # found chain 1cs0A in template set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0A)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 T0318 15 :DGLTSLIIV 1cs0A 352 :IDYVVTKIP T0318 24 :GKKSVLK 1cs0A 363 :NFEKFAG T0318 56 :ISRIPASGRHPLHYELAHLIT 1cs0A 370 :ANDRLTTQMKSVGEVMAIGRT T0318 77 :VPDASSRGN 1cs0A 409 :FDPKVSLDD T0318 87 :PTNAHSIYKELKPIN 1cs0A 418 :PEALTKIRRELKDAG T0318 117 :YPDVLSHVAAIAR 1cs0A 433 :ADRIWYIADAFRA T0318 154 :KLTNED 1cs0A 446 :GLSVDG T0318 160 :AVFLTDLSESVRETARLIDTPANILTTDALVD 1cs0A 460 :RWFLVQIEELVRLEEKVAEVGITGLNADFLRQ T0318 192 :EAVKVGNATGSKITVIR 1cs0A 512 :EIRKLRDQYDLHPVYKR T0318 223 :VGKAG 1cs0A 529 :VDTCA T0318 228 :PTPPAFVVLSHEVP 1cs0A 537 :ATDTAYMYSTYEEE T0318 244 :TEHIALVGKG 1cs0A 559 :REKIMVLGGG T0318 262 :QIKTK 1cs0A 569 :PNRIG T0318 274 :RDMGGAAGMLEAYSALVKHGF 1cs0A 574 :QGIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNVSPIA 1cs0A 595 :ETIMVNCNPETVSTDYD T0318 335 :AEG 1cs0A 612 :TSD T0318 338 :RLILADGVFYA 1cs0A 620 :PVTLEDVLEIV T0318 350 :ETLKATTIFDMAT 1cs0A 631 :RIEKPKGVIVQYG T0318 363 :LTGA 1cs0A 650 :LARA T0318 368 :AWLSG 1cs0A 654 :LEAAG T0318 375 :HGAAMTNDEQL 1cs0A 659 :VPVIGTSPDAI T0318 386 :ENEIIKAGKASG 1cs0A 675 :RERFQHAVERLK Number of specific fragments extracted= 22 number of extra gaps= 1 total=960 Number of alignments=58 # 1cs0A read from 1cs0A/merged-good-all-a2m # found chain 1cs0A in template set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0A)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 T0318 84 :GNTPTNAHSIYKELK 1cs0A 418 :PEALTKIRRELKDAG T0318 114 :FAEYPDVLSHVA 1cs0A 433 :ADRIWYIADAFR T0318 153 :DKLTNEDA 1cs0A 445 :AGLSVDGV T0318 161 :VFLTDLSESVRETARLIDTPANILTTDALVD 1cs0A 461 :WFLVQIEELVRLEEKVAEVGITGLNADFLRQ T0318 192 :EAVKVGNATGSKITVIR 1cs0A 512 :EIRKLRDQYDLHPVYKR T0318 223 :VGKAGP 1cs0A 529 :VDTCAA T0318 229 :TPPAFVVLSHEVP 1cs0A 538 :TDTAYMYSTYEEE T0318 244 :TEHIALVGKG 1cs0A 559 :REKIMVLGGG T0318 262 :QIKTKT 1cs0A 569 :PNRIGQ T0318 275 :DMGGAAGMLEAYSALVKHGF 1cs0A 575 :GIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNVSPIANK 1cs0A 595 :ETIMVNCNPETVSTDYDTS T0318 326 :KTVEIN 1cs0A 614 :DRLYFE T0318 338 :RLILADGVFYA 1cs0A 620 :PVTLEDVLEIV T0318 350 :ETLKATTIFDMAT 1cs0A 631 :RIEKPKGVIVQYG T0318 363 :LTGAQ 1cs0A 650 :LARAL T0318 369 :WLSG 1cs0A 655 :EAAG T0318 375 :HGAAMTNDEQL 1cs0A 659 :VPVIGTSPDAI T0318 386 :ENEIIKAGKASG 1cs0A 675 :RERFQHAVERLK Number of specific fragments extracted= 18 number of extra gaps= 1 total=978 Number of alignments=59 # 1cs0A read from 1cs0A/merged-good-all-a2m # found chain 1cs0A in template set Warning: unaligning (T0318)G242 because of BadResidue code BAD_PEPTIDE in next template residue (1cs0A)D558 Warning: unaligning (T0318)S243 because of BadResidue code BAD_PEPTIDE at template residue (1cs0A)D558 T0318 74 :LITVPDASSRGNTPTNAHSI 1cs0A 446 :GLSVDGVFNLTNIDRWFLVQ T0318 117 :YPDVLSHVAAIART 1cs0A 466 :IEELVRLEEKVAEV T0318 151 :VCDKLTNEDAVFLTDLSESVRETARLIDTP 1cs0A 480 :GITGLNADFLRQLKRKGFADARLAKLAGVR T0318 190 :VDEAVKVGNATGSKITVIR 1cs0A 510 :EAEIRKLRDQYDLHPVYKR T0318 223 :VGKAG 1cs0A 529 :VDTCA T0318 228 :PTPPAFVVLSHEVP 1cs0A 537 :ATDTAYMYSTYEEE T0318 244 :TEHIALVGKG 1cs0A 559 :REKIMVLGGG T0318 262 :QIKTK 1cs0A 569 :PNRIG T0318 274 :RDMGGAAGMLEAYSALVKHGF 1cs0A 574 :QGIEFDYCCVHASLALREDGY T0318 297 :TLHACLCIVENNVSPIA 1cs0A 595 :ETIMVNCNPETVSTDYD T0318 335 :AEGR 1cs0A 612 :TSDR T0318 339 :LILADGVFYA 1cs0A 621 :VTLEDVLEIV T0318 350 :ETLKATTIF 1cs0A 631 :RIEKPKGVI T0318 363 :LTGAQAWL 1cs0A 650 :LARALEAA T0318 374 :LHGAAMTNDEQL 1cs0A 658 :GVPVIGTSPDAI T0318 386 :ENEIIKAGKASG 1cs0A 675 :RERFQHAVERLK Number of specific fragments extracted= 16 number of extra gaps= 1 total=994 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qq9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0318 read from 1qq9A/merged-good-all-a2m # 1qq9A read from 1qq9A/merged-good-all-a2m # found chain 1qq9A in training set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1qq9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1qq9A)N98 T0318 153 :DKLTNEDAVF 1qq9A 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1qq9A 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1qq9A 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHE 1qq9A 58 :TSGGATGYNLIANWP T0318 241 :PG 1qq9A 73 :GG T0318 244 :TEHIALVGKGVV 1qq9A 76 :PNKVLMAGAHLD T0318 265 :TKTGMPNMK 1qq9A 88 :SVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1qq9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1qq9A 121 :KHLRFAWWGAEEL T0318 317 :DD 1qq9A 134 :GL T0318 343 :DGVFYAKETLK 1qq9A 136 :IGSKFYVNNLP T0318 354 :ATTIFDMATL 1qq9A 153 :LAGYLNFDMI T0318 370 :LSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPD 1qq9A 163 :GSPNPGYFVYDDDPVIEKTFKNYFAGLNVPTEIETEGDG T0318 415 :KSSIADMKNSN 1qq9A 202 :RSDHAPFKNVG T0318 451 :LRWLHLDIAA 1qq9A 213 :VPVGGLFTGA Number of specific fragments extracted= 15 number of extra gaps= 1 total=1009 Number of alignments=61 # 1qq9A read from 1qq9A/merged-good-all-a2m # found chain 1qq9A in training set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1qq9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1qq9A)N98 T0318 153 :DKLTNEDAVF 1qq9A 2 :PDIPLANVKA T0318 165 :DLSESVRETARLIDTPANIL 1qq9A 12 :HLTQLSTIAANNGGNRAHGR T0318 185 :TTDALVDEAVKVGNATGSKITVIR 1qq9A 33 :GYKASVDYVKAKLDAAGYTTTLQQ T0318 225 :KAGPTPPAFVVLSHEV 1qq9A 58 :TSGGATGYNLIANWPG T0318 242 :G 1qq9A 74 :G T0318 244 :TEHIALVGKGVV 1qq9A 76 :PNKVLMAGAHLD T0318 265 :TKTGMPNMK 1qq9A 88 :SVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1qq9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1qq9A 121 :KHLRFAWWGAEEL T0318 317 :DD 1qq9A 134 :GL T0318 343 :DGVFYAKETL 1qq9A 136 :IGSKFYVNNL T0318 353 :KATTIFDMATL 1qq9A 152 :KLAGYLNFDMI T0318 370 :LSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPD 1qq9A 163 :GSPNPGYFVYDDDPVIEKTFKNYFAGLNVPTEIETEGDG T0318 431 :GPPSA 1qq9A 202 :RSDHA T0318 443 :AHIG 1qq9A 207 :PFKN T0318 449 :EGLR 1qq9A 211 :VGVP Number of specific fragments extracted= 16 number of extra gaps= 1 total=1025 Number of alignments=62 # 1qq9A read from 1qq9A/merged-good-all-a2m # found chain 1qq9A in training set Warning: unaligning (T0318)R274 because of BadResidue code BAD_PEPTIDE in next template residue (1qq9A)N98 Warning: unaligning (T0318)D275 because of BadResidue code BAD_PEPTIDE at template residue (1qq9A)N98 T0318 153 :DKLTNEDAVFL 1qq9A 2 :PDIPLANVKAH T0318 166 :LSESVRETARLIDT 1qq9A 13 :LTQLSTIAANNGGN T0318 180 :PANILTTDALVDEAVKVGNATGSKITVIR 1qq9A 28 :AHGRPGYKASVDYVKAKLDAAGYTTTLQQ T0318 226 :AGPTPPAFVVLSH 1qq9A 59 :SGGATGYNLIANW T0318 242 :GS 1qq9A 72 :PG T0318 244 :TEHIALVGK 1qq9A 76 :PNKVLMAGA T0318 262 :QIKTKTGMPNMK 1qq9A 85 :HLDSVSSGAGIN T0318 276 :MGGAAGMLEAYSALVKHGFS 1qq9A 99 :GSGSAAVLETALAVSRAGYQ T0318 296 :QTLHACLCIVENN 1qq9A 121 :KHLRFAWWGAEEL T0318 344 :GVFYAKET 1qq9A 137 :GSKFYVNN T0318 352 :LKATTIFDMATLT 1qq9A 151 :SKLAGYLNFDMIG T0318 371 :SGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDL 1qq9A 164 :SPNPGYFVYDDDPVIEKTFKNYFAGLNVPTEIETEGDGR T0318 424 :SNL 1qq9A 203 :SDH T0318 442 :GAHIG 1qq9A 206 :APFKN T0318 449 :EGLRWLHL 1qq9A 211 :VGVPVGGL Number of specific fragments extracted= 15 number of extra gaps= 1 total=1040 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bllE/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bllE expands to /projects/compbio/data/pdb/1bll.pdb.gz 1bllE:# T0318 read from 1bllE/merged-good-all-a2m # 1bllE read from 1bllE/merged-good-all-a2m # adding 1bllE to template set # found chain 1bllE in template set Warning: unaligning (T0318)D15 because first residue in template chain is (1bllE)T1 Warning: unaligning (T0318)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)E15 Warning: unaligning (T0318)K26 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)E15 Warning: unaligning (T0318)K30 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D16 Warning: unaligning (T0318)N31 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)E17 Warning: unaligning (T0318)F134 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)D131 Warning: unaligning (T0318)S135 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D131 Warning: unaligning (T0318)S371 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)G369 Warning: unaligning (T0318)G372 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)G369 Warning: unaligning (T0318)R373 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)S370 Warning: unaligning (T0318)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)R396 Warning: unaligning (T0318)L399 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)R396 T0318 16 :GLTSLIIVG 1bllE 2 :KGLVLGIYS T0318 32 :VT 1bllE 18 :PQ T0318 34 :FEGKFKEVAQKFVTDGDSWNSMISRIPASGRH 1bllE 27 :FNKLVSGKLREILNISGPPLKAGKTRTFYGLH T0318 66 :PLHYELAHLITVPDAS 1bllE 60 :DFPSVVVVGLGKKTAG T0318 82 :SRGN 1bllE 78 :EQEN T0318 86 :TPTNAHSIYKELKPINY 1bllE 89 :IRAAVAAGCRQIQDLEI T0318 110 :HFVLFAEYPDVLSHVAAIARTFCK 1bllE 106 :PSVEVDPCGDAQAAAEGAVLGLYE T0318 136 :MKTSGIR 1bllE 132 :DLKQKRK T0318 144 :LNVNI 1bllE 139 :VVVSA T0318 150 :VVCDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1bllE 144 :KLHGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1bllE 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1bllE 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWL 1bllE 347 :HTFNPKVIINAATLTGAMDIA T0318 374 :LHGAAMTNDEQLENEIIKAGKASG 1bllE 371 :GATGVFTNSSWLWNKLFEASIETG T0318 400 :VAPMLFAPDLFFGDLKSSIADMKNSNLGKMDG 1bllE 397 :VWRMPLFEHYTRQVIDCQLADVNNIGKYRSAG T0318 434 :SAVAGLLIGAHIGFG 1bllE 429 :ACTAAAFLKEFVTHP T0318 452 :RWLHLDIAAPA 1bllE 444 :KWAHLDIAGVM T0318 463 :EVGDRGTGYGPALFSTLLGKYT 1bllE 462 :YLRKGMAGRPTRTLIEFLFRFS Number of specific fragments extracted= 18 number of extra gaps= 4 total=1058 Number of alignments=64 # 1bllE read from 1bllE/merged-good-all-a2m # found chain 1bllE in template set Warning: unaligning (T0318)D15 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D16 Warning: unaligning (T0318)G16 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)E17 Warning: unaligning (T0318)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)D131 Warning: unaligning (T0318)C132 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D131 Warning: unaligning (T0318)S371 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)G369 Warning: unaligning (T0318)G372 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)G369 Warning: unaligning (T0318)R373 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)S370 Warning: unaligning (T0318)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)R396 Warning: unaligning (T0318)L399 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)R396 T0318 17 :LTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISR 1bllE 18 :PQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHE T0318 60 :PASGRHPLHYELA 1bllE 60 :DFPSVVVVGLGKK T0318 73 :HLITVPDASSRGNTPTNAHSIYKE 1bllE 80 :ENWHEGKENIRAAVAAGCRQIQDL T0318 105 :DTKNVHFVLFAEYPDVLSHVAAIART 1bllE 104 :EIPSVEVDPCGDAQAAAEGAVLGLYE T0318 133 :KFS 1bllE 132 :DLK T0318 138 :TSGIRELNVNI 1bllE 135 :QKRKVVVSAKL T0318 152 :CDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1bllE 146 :HGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1bllE 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1bllE 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWL 1bllE 347 :HTFNPKVIINAATLTGAMDIA T0318 374 :LHGAAMTNDEQLENEIIKAGKASG 1bllE 371 :GATGVFTNSSWLWNKLFEASIETG T0318 400 :VAPMLFAPDLFFGDLKSSIADMKNSN 1bllE 397 :VWRMPLFEHYTRQVIDCQLADVNNIG T0318 428 :KMDGPPSAVAGLLIGAHIGFG 1bllE 423 :KYRSAGACTAAAFLKEFVTHP T0318 452 :RWLHLDIAAPAEVGD 1bllE 444 :KWAHLDIAGVMTNKD T0318 467 :RGTGYGPALFSTLLGKYT 1bllE 466 :GMAGRPTRTLIEFLFRFS Number of specific fragments extracted= 15 number of extra gaps= 3 total=1073 Number of alignments=65 # 1bllE read from 1bllE/merged-good-all-a2m # found chain 1bllE in template set Warning: unaligning (T0318)D15 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D16 Warning: unaligning (T0318)G16 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)E17 Warning: unaligning (T0318)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)D131 Warning: unaligning (T0318)C132 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)D131 Warning: unaligning (T0318)S371 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)G369 Warning: unaligning (T0318)G372 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)G369 Warning: unaligning (T0318)R373 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)S370 Warning: unaligning (T0318)D398 because of BadResidue code BAD_PEPTIDE in next template residue (1bllE)R396 Warning: unaligning (T0318)L399 because of BadResidue code BAD_PEPTIDE at template residue (1bllE)R396 T0318 17 :LTSLIIVGKKSVLKNVTFEGKFKEVAQKFV 1bllE 18 :PQFTSAGENFNKLVSGKLREILNISGPPLK T0318 48 :DGDSWNSMISRIPASGRHPLHYELAHLITVP 1bllE 48 :AGKTRTFYGLHEDFPSVVVVGLGKKTAGIDE T0318 79 :DASSRGNTPTNAHSIYKELKPIN 1bllE 85 :GKENIRAAVAAGCRQIQDLEIPS T0318 110 :HFVLFAEYPDVLSHVAAIART 1bllE 109 :EVDPCGDAQAAAEGAVLGLYE T0318 133 :KF 1bllE 132 :DL T0318 137 :KTSGIRELN 1bllE 134 :KQKRKVVVS T0318 149 :DVVCDKLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNAT 1bllE 143 :AKLHGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSA T0318 201 :GSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS 1bllE 197 :KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPN T0318 244 :TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYA 1bllE 242 :EPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA T0318 350 :ETLKATTIFDMATLTGAQAWL 1bllE 347 :HTFNPKVIINAATLTGAMDIA T0318 374 :LHGAAMTNDEQLENEIIKAGKASG 1bllE 371 :GATGVFTNSSWLWNKLFEASIETG T0318 400 :VAPMLFAPDLFFGDLKSSIADMKNSNL 1bllE 397 :VWRMPLFEHYTRQVIDCQLADVNNIGK T0318 429 :MDGPPSAVAGLLIGAHIG 1bllE 424 :YRSAGACTAAAFLKEFVT T0318 450 :GLRWLHLDIAAPAEVGDRGTGYGPALFSTLLGKYTSVP 1bllE 442 :HPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFL Number of specific fragments extracted= 14 number of extra gaps= 3 total=1087 Number of alignments=66 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0318//projects/compbio/experiments/protein-predict/casp7/T0318/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0318//projects/compbio/experiments/protein-predict/casp7/T0318/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0318/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0318/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)C301.CB) [> 3.7984 = 6.3307 < 8.2299] w=1.0000 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)H299.CB) [> 3.5899 = 5.9832 < 7.7781] w=1.0000 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)H299.CB) [> 3.7856 = 6.3093 < 8.2021] w=1.0000 to align # Constraint # added constraint: constraint((T0318)V194.CB, (T0318)I204.CB) [> 2.9771 = 4.9619 < 6.4505] w=0.9871 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)C301.CB) [> 3.9115 = 6.5191 < 8.4749] w=0.9819 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)F358.CB) [> 3.7793 = 6.2988 < 8.1884] w=0.9615 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)A354.CB) [> 3.4048 = 5.6747 < 7.3771] w=0.9615 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)T355.CB) [> 3.4740 = 5.7900 < 7.5270] w=0.9615 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)L302.CB) [> 3.5719 = 5.9532 < 7.7392] w=0.9593 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)M282.CB) [> 3.7316 = 6.2193 < 8.0850] w=0.9495 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A279.CB) [> 3.3125 = 5.5209 < 7.1771] w=0.9495 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)M282.CB) [> 3.1078 = 5.1797 < 6.7336] w=0.9299 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)L298.CB) [> 3.7790 = 6.2983 < 8.1877] w=0.9284 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)L298.CB) [> 3.7679 = 6.2798 < 8.1638] w=0.9232 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)C301.CB) [> 3.3470 = 5.5784 < 7.2519] w=0.9230 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)H299.CB) [> 3.5068 = 5.8447 < 7.5981] w=0.9230 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)T356.CB) [> 3.7211 = 6.2018 < 8.0623] w=0.9224 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)T297.CB) [> 3.3880 = 5.6466 < 7.3406] w=0.9148 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)G278.CA) [> 4.0673 = 6.7788 < 8.8125] w=0.9104 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)L302.CB) [> 3.4863 = 5.8106 < 7.5537] w=0.9014 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)G278.CA) [> 2.7861 = 4.6435 < 6.0365] w=0.8908 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)C303.CB) [> 3.0658 = 5.1097 < 6.6426] w=0.8791 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)T297.CB) [> 3.4493 = 5.7488 < 7.4734] w=0.8741 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)H238.CB) [> 3.3375 = 5.5625 < 7.2312] w=0.8724 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)L236.CB) [> 2.9374 = 4.8956 < 6.3643] w=0.8724 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)L236.CB) [> 4.6701 = 7.7836 < 10.1186] w=0.8724 to align # Constraint # added constraint: constraint((T0318)V206.CB, (T0318)V234.CB) [> 3.5128 = 5.8546 < 7.6110] w=0.8724 to align # Constraint # added constraint: constraint((T0318)I207.CB, (T0318)V235.CB) [> 3.7018 = 6.1697 < 8.0207] w=0.8724 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)F358.CB) [> 3.4026 = 5.6709 < 7.3722] w=0.8713 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)I357.CB) [> 4.2617 = 7.1027 < 9.2336] w=0.8713 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)A300.CB) [> 3.4501 = 5.7501 < 7.4751] w=0.8658 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)L302.CB) [> 3.9919 = 6.6532 < 8.6492] w=0.8580 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)L283.CB) [> 3.6857 = 6.1428 < 7.9856] w=0.8575 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)L236.CB) [> 3.4402 = 5.7337 < 7.4538] w=0.8510 to align # Constraint # added constraint: constraint((T0318)K203.CB, (T0318)L236.CB) [> 4.3792 = 7.2987 < 9.4883] w=0.8510 to align # Constraint # added constraint: constraint((T0318)K203.CB, (T0318)S237.CB) [> 3.0074 = 5.0123 < 6.5160] w=0.8510 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)V234.CB) [> 4.0435 = 6.7392 < 8.7610] w=0.8510 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)V235.CB) [> 4.2264 = 7.0440 < 9.1572] w=0.8510 to align # Constraint # added constraint: constraint((T0318)Y286.CB, (T0318)A300.CB) [> 3.1128 = 5.1880 < 6.7443] w=0.8463 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)I304.CB) [> 3.6608 = 6.1013 < 7.9317] w=0.8369 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)L302.CB) [> 4.1748 = 6.9580 < 9.0454] w=0.8336 to align # Constraint # added constraint: constraint((T0318)R208.CB, (T0318)A232.CB) [> 3.8067 = 6.3446 < 8.2479] w=0.8252 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)A300.CB) [> 3.6723 = 6.1205 < 7.9567] w=0.8249 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)V234.CB) [> 3.5242 = 5.8737 < 7.6358] w=0.8203 to align # Constraint # added constraint: constraint((T0318)T200.CB, (T0318)V290.CB) [> 2.6496 = 4.4159 < 5.7407] w=0.8196 to align # Constraint # added constraint: constraint((T0318)T244.CB, (T0318)T297.CB) [> 3.1083 = 5.1804 < 6.7346] w=0.8155 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)S237.CB) [> 4.5132 = 7.5219 < 9.7785] w=0.8107 to align # Constraint # added constraint: constraint((T0318)V206.CB, (T0318)V235.CB) [> 4.6078 = 7.6796 < 9.9835] w=0.8073 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)M360.CB) [> 3.5332 = 5.8886 < 7.6552] w=0.8064 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)M360.CB) [> 3.8501 = 6.4169 < 8.3419] w=0.8064 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)M360.CB) [> 2.4316 = 4.0527 < 5.2685] w=0.8064 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)M360.CB) [> 4.4897 = 7.4828 < 9.7276] w=0.8064 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)L236.CB) [> 3.9955 = 6.6592 < 8.6570] w=0.7999 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)S237.CB) [> 3.8834 = 6.4723 < 8.4140] w=0.7999 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)V235.CB) [> 2.7489 = 4.5815 < 5.9560] w=0.7999 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)M360.CB) [> 4.2786 = 7.1311 < 9.2704] w=0.7999 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)V290.CB) [> 4.1392 = 6.8986 < 8.9682] w=0.7989 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)L302.CB) [> 3.2572 = 5.4287 < 7.0573] w=0.7974 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)Y286.CB) [> 4.1838 = 6.9730 < 9.0649] w=0.7925 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)Y286.CB) [> 3.6802 = 6.1336 < 7.9737] w=0.7924 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)V206.CB) [> 3.5487 = 5.9146 < 7.6890] w=0.7912 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)C303.CB) [> 4.1836 = 6.9727 < 9.0645] w=0.7902 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)C303.CB) [> 4.1818 = 6.9698 < 9.0607] w=0.7902 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)F358.CB) [> 4.4475 = 7.4125 < 9.6362] w=0.7881 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)A232.CB) [> 3.5553 = 5.9256 < 7.7032] w=0.7862 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A279.CB) [> 3.2603 = 5.4338 < 7.0640] w=0.7783 to align # Constraint # added constraint: constraint((T0318)V206.CB, (T0318)A232.CB) [> 2.9543 = 4.9238 < 6.4010] w=0.7731 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)I357.CB) [> 3.0923 = 5.1539 < 6.7000] w=0.7663 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)Q296.CB) [> 3.9309 = 6.5515 < 8.5170] w=0.7637 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)C301.CB) [> 3.3508 = 5.5846 < 7.2600] w=0.7617 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)M360.CB) [> 3.4565 = 5.7609 < 7.4891] w=0.7608 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)D359.CB) [> 3.7304 = 6.2174 < 8.0826] w=0.7608 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A300.CB) [> 3.8036 = 6.3393 < 8.2411] w=0.7595 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)G278.CA) [> 4.1336 = 6.8894 < 8.9562] w=0.7588 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)A354.CB) [> 3.5629 = 5.9381 < 7.7196] w=0.7551 to align # Constraint # added constraint: constraint((T0318)Y286.CB, (T0318)L298.CB) [> 3.8656 = 6.4426 < 8.3754] w=0.7548 to align # Constraint # added constraint: constraint((T0318)I207.CB, (T0318)V234.CB) [> 4.4956 = 7.4927 < 9.7406] w=0.7487 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)L385.CB) [> 3.5069 = 5.8448 < 7.5982] w=0.7478 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)V234.CB) [> 2.9946 = 4.9910 < 6.4883] w=0.7423 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)S237.CB) [> 4.4591 = 7.4318 < 9.6614] w=0.7423 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)M360.CB) [> 3.3407 = 5.5678 < 7.2382] w=0.7413 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)D359.CB) [> 4.4541 = 7.4235 < 9.6505] w=0.7413 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)G277.CA) [> 4.3799 = 7.2998 < 9.4898] w=0.7413 to align # Constraint # added constraint: constraint((T0318)S237.CB, (T0318)H299.CB) [> 3.3591 = 5.5984 < 7.2779] w=0.7413 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)V234.CB) [> 4.5120 = 7.5200 < 9.7760] w=0.7413 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)A279.CB) [> 4.2328 = 7.0546 < 9.1710] w=0.7413 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)T362.CB) [> 3.9987 = 6.6645 < 8.6638] w=0.7379 to align # Constraint # added constraint: constraint((T0318)I207.CB, (T0318)A232.CB) [> 3.8163 = 6.3606 < 8.2688] w=0.7351 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)P231.CB) [> 3.8744 = 6.4573 < 8.3944] w=0.7311 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A300.CB) [> 3.9777 = 6.6295 < 8.6184] w=0.7259 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)A361.CB) [> 3.7130 = 6.1884 < 8.0449] w=0.7259 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)A300.CB) [> 4.3876 = 7.3126 < 9.5064] w=0.7254 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)L298.CB) [> 4.2860 = 7.1434 < 9.2864] w=0.7201 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)C301.CB) [> 4.1059 = 6.8431 < 8.8961] w=0.7073 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)L302.CB) [> 2.5762 = 4.2937 < 5.5818] w=0.7051 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)A300.CB) [> 2.5779 = 4.2965 < 5.5855] w=0.7051 to align # Constraint # added constraint: constraint((T0318)S237.CB, (T0318)T297.CB) [> 4.3326 = 7.2210 < 9.3873] w=0.7051 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)T297.CB) [> 4.1307 = 6.8845 < 8.9499] w=0.7051 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)T362.CB) [> 3.8801 = 6.4668 < 8.4068] w=0.7023 to align # Constraint # added constraint: constraint((T0318)L289.CB, (T0318)L298.CB) [> 3.6038 = 6.0064 < 7.8083] w=0.6989 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)Q296.CB) [> 3.2672 = 5.4453 < 7.0789] w=0.6986 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)H299.CB) [> 4.0078 = 6.6797 < 8.6837] w=0.6934 to align # Constraint # added constraint: constraint((T0318)V194.CB, (T0318)V206.CB) [> 4.0800 = 6.8000 < 8.8401] w=0.6909 to align # Constraint # added constraint: constraint((T0318)V196.CB, (T0318)S287.CB) [> 3.4404 = 5.7340 < 7.4541] w=0.6902 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)H299.CB) [> 4.1972 = 6.9954 < 9.0941] w=0.6869 to align # Constraint # added constraint: constraint((T0318)S237.CB, (T0318)L298.CB) [> 4.4662 = 7.4437 < 9.6768] w=0.6869 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)L298.CB) [> 2.7443 = 4.5739 < 5.9461] w=0.6869 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)C301.CB) [> 4.4321 = 7.3868 < 9.6028] w=0.6865 to align # Constraint # added constraint: constraint((T0318)L385.CB, (T0318)R452.CB) [> 3.2053 = 5.3422 < 6.9449] w=0.6861 to align # Constraint # added constraint: constraint((T0318)Q384.CB, (T0318)R452.CB) [> 4.3328 = 7.2213 < 9.3877] w=0.6861 to align # Constraint # added constraint: constraint((T0318)I357.CB, (T0318)R452.CB) [> 4.3043 = 7.1739 < 9.3261] w=0.6861 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)R452.CB) [> 3.0144 = 5.0240 < 6.5312] w=0.6861 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)V290.CB) [> 3.9899 = 6.6499 < 8.6449] w=0.6837 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)C303.CB) [> 3.3203 = 5.5339 < 7.1940] w=0.6765 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)G344.CA) [> 4.1504 = 6.9173 < 8.9925] w=0.6700 to align # Constraint # added constraint: constraint((T0318)V206.CB, (T0318)F233.CB) [> 4.4132 = 7.3554 < 9.5620] w=0.6700 to align # Constraint # added constraint: constraint((T0318)V196.CB, (T0318)L283.CB) [> 3.9343 = 6.5571 < 8.5243] w=0.6624 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)W453.CB) [> 4.5308 = 7.5513 < 9.8167] w=0.6580 to align # Constraint # added constraint: constraint((T0318)I357.CB, (T0318)W453.CB) [> 3.0525 = 5.0876 < 6.6138] w=0.6580 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)W453.CB) [> 4.4847 = 7.4745 < 9.7169] w=0.6580 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)M282.CB) [> 3.3845 = 5.6408 < 7.3330] w=0.6502 to align # Constraint # added constraint: constraint((T0318)T355.CB, (T0318)R452.CB) [> 4.3109 = 7.1848 < 9.3402] w=0.6450 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)V305.CB) [> 2.7624 = 4.6040 < 5.9851] w=0.6434 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)C301.CB) [> 4.0657 = 6.7762 < 8.8090] w=0.6424 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)L302.CB) [> 4.1606 = 6.9344 < 9.0147] w=0.6402 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)L289.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.6321 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)I304.CB) [> 3.0966 = 5.1611 < 6.7094] w=0.6253 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A361.CB) [> 3.0449 = 5.0748 < 6.5972] w=0.6251 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)I304.CB) [> 3.2874 = 5.4790 < 7.1227] w=0.6244 to align # Constraint # added constraint: constraint((T0318)T200.CB, (T0318)S287.CB) [> 3.2264 = 5.3773 < 6.9904] w=0.6224 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)A232.CB) [> 3.1800 = 5.3001 < 6.8901] w=0.6188 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)I304.CB) [> 3.5687 = 5.9479 < 7.7323] w=0.6148 to align # Constraint # added constraint: constraint((T0318)V240.CB, (T0318)T297.CB) [> 3.3897 = 5.6496 < 7.3444] w=0.6137 to align # Constraint # added constraint: constraint((T0318)I389.CB, (T0318)L454.CB) [> 3.6742 = 6.1237 < 7.9608] w=0.6009 to align # Constraint # added constraint: constraint((T0318)E386.CB, (T0318)L454.CB) [> 3.6446 = 6.0743 < 7.8965] w=0.6009 to align # Constraint # added constraint: constraint((T0318)L385.CB, (T0318)L454.CB) [> 2.7244 = 4.5407 < 5.9029] w=0.6009 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)L454.CB) [> 3.8187 = 6.3646 < 8.2739] w=0.6009 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)L454.CB) [> 4.1998 = 6.9997 < 9.0996] w=0.6009 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)L454.CB) [> 2.9501 = 4.9168 < 6.3918] w=0.6009 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)L454.CB) [> 4.3381 = 7.2301 < 9.3992] w=0.6009 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)W453.CB) [> 4.1762 = 6.9603 < 9.0484] w=0.5930 to align # Constraint # added constraint: constraint((T0318)I357.CB, (T0318)L454.CB) [> 4.5607 = 7.6012 < 9.8815] w=0.5802 to align # Constraint # added constraint: constraint((T0318)E239.CB, (T0318)T297.CB) [> 3.5605 = 5.9342 < 7.7145] w=0.5774 to align # Constraint # added constraint: constraint((T0318)E245.CB, (T0318)K353.CB) [> 3.3956 = 5.6594 < 7.3572] w=0.5745 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)K353.CB) [> 4.0084 = 6.6807 < 8.6849] w=0.5744 to align # Constraint # added constraint: constraint((T0318)D382.CB, (T0318)R452.CB) [> 2.4207 = 4.0345 < 5.2449] w=0.5718 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)A300.CB) [> 4.5288 = 7.5481 < 9.8125] w=0.5679 to align # Constraint # added constraint: constraint((T0318)E245.CB, (T0318)T297.CB) [> 4.3030 = 7.1716 < 9.3231] w=0.5622 to align # Constraint # added constraint: constraint((T0318)A232.CB, (T0318)I304.CB) [> 3.0371 = 5.0619 < 6.5805] w=0.5604 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)I357.CB) [> 4.4052 = 7.3419 < 9.5445] w=0.5602 to align # Constraint # added constraint: constraint((T0318)I389.CB, (T0318)V400.CB) [> 3.8473 = 6.4123 < 8.3359] w=0.5591 to align # Constraint # added constraint: constraint((T0318)I390.CB, (T0318)V400.CB) [> 3.3920 = 5.6534 < 7.3494] w=0.5580 to align # Constraint # added constraint: constraint((T0318)L283.CB, (T0318)A300.CB) [> 4.0079 = 6.6798 < 8.6837] w=0.5526 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)G344.CA) [> 3.4095 = 5.6826 < 7.3873] w=0.5498 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)A280.CB) [> 3.3275 = 5.5459 < 7.2096] w=0.5464 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)A279.CB) [> 4.1649 = 6.9414 < 9.0239] w=0.5464 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)A280.CB) [> 2.6784 = 4.4640 < 5.8032] w=0.5464 to align # Constraint # added constraint: constraint((T0318)E172.CB, (T0318)A280.CB) [> 3.4834 = 5.8057 < 7.5474] w=0.5464 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)W453.CB) [> 3.1276 = 5.2127 < 6.7766] w=0.5459 to align # Constraint # added constraint: constraint((T0318)D382.CB, (T0318)W453.CB) [> 3.7501 = 6.2502 < 8.1253] w=0.5459 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)L302.CB) [> 3.8498 = 6.4164 < 8.3413] w=0.5441 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)E306.CB) [> 3.3155 = 5.5258 < 7.1836] w=0.5403 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)A354.CB) [> 3.6647 = 6.1078 < 7.9401] w=0.5400 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)E284.CB) [> 2.8681 = 4.7801 < 6.2142] w=0.5399 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)Q296.CB) [> 3.1918 = 5.3197 < 6.9156] w=0.5397 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)I357.CB) [> 3.3255 = 5.5425 < 7.2052] w=0.5347 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A280.CB) [> 3.5714 = 5.9524 < 7.7381] w=0.5330 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)T356.CB) [> 4.0596 = 6.7661 < 8.7959] w=0.5322 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)L456.CB) [> 3.2829 = 5.4716 < 7.1130] w=0.5290 to align # Constraint # added constraint: constraint((T0318)D187.CB, (T0318)A232.CB) [> 3.9033 = 6.5054 < 8.4571] w=0.5278 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)I204.CB) [> 3.7249 = 6.2082 < 8.0706] w=0.5248 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)A401.CB) [> 3.5146 = 5.8576 < 7.6149] w=0.5200 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)A401.CB) [> 3.7771 = 6.2953 < 8.1838] w=0.5200 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)V400.CB) [> 3.3895 = 5.6492 < 7.3439] w=0.5200 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)N308.CB) [> 3.1284 = 5.2140 < 6.7783] w=0.5135 to align # Constraint # added constraint: constraint((T0318)G227.CA, (T0318)N308.CB) [> 3.4547 = 5.7578 < 7.4851] w=0.5135 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)Y286.CB) [> 3.9405 = 6.5675 < 8.5377] w=0.5135 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)V290.CB) [> 3.7494 = 6.2490 < 8.1237] w=0.5135 to align # Constraint # added constraint: constraint((T0318)L283.CB, (T0318)L302.CB) [> 4.1935 = 6.9891 < 9.0858] w=0.5135 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)A348.CB) [> 3.8939 = 6.4899 < 8.4369] w=0.5135 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)I389.CB) [> 3.2300 = 5.3834 < 6.9984] w=0.5135 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)V400.CB) [> 2.9950 = 4.9916 < 6.4891] w=0.5135 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)A401.CB) [> 4.2805 = 7.1341 < 9.2744] w=0.5135 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)H455.CB) [> 4.2768 = 7.1280 < 9.2664] w=0.5100 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)H455.CB) [> 2.6291 = 4.3819 < 5.6964] w=0.5100 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)L456.CB) [> 3.9859 = 6.6432 < 8.6362] w=0.5100 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)L456.CB) [> 3.6090 = 6.0150 < 7.8195] w=0.5100 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)H455.CB) [> 2.8962 = 4.8270 < 6.2751] w=0.5035 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)H299.CB) [> 4.5160 = 7.5267 < 9.7847] w=0.5035 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)T297.CB) [> 4.2965 = 7.1608 < 9.3091] w=0.5035 to align # Constraint # added constraint: constraint((T0318)P241.CB, (T0318)S295.CB) [> 3.4663 = 5.7772 < 7.5104] w=0.5031 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)H299.CB) [> 4.3976 = 7.3294 < 9.5282] w=0.5029 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A285.CB) [> 4.0700 = 6.7833 < 8.8182] w=0.5006 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)G281.CA) [> 4.4835 = 7.4725 < 9.7142] w=0.5006 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)S287.CB) [> 3.7166 = 6.1944 < 8.0527] w=0.4996 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)I304.CB) [> 3.7348 = 6.2247 < 8.0921] w=0.4992 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)C301.CB) [> 3.9701 = 6.6168 < 8.6019] w=0.4965 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)L298.CB) [> 3.7318 = 6.2196 < 8.0855] w=0.4965 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)D343.CB) [> 3.1933 = 5.3222 < 6.9189] w=0.4965 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)G277.CA) [> 3.7544 = 6.2573 < 8.1344] w=0.4953 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)M276.CB) [> 3.3786 = 5.6310 < 7.3203] w=0.4953 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)G277.CA) [> 4.4871 = 7.4785 < 9.7221] w=0.4953 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)M276.CB) [> 3.8596 = 6.4327 < 8.3626] w=0.4953 to align # Constraint # added constraint: constraint((T0318)A285.CB, (T0318)A300.CB) [> 4.4908 = 7.4847 < 9.7301] w=0.4918 to align # Constraint # added constraint: constraint((T0318)I357.CB, (T0318)L451.CB) [> 3.3648 = 5.6080 < 7.2904] w=0.4910 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)L451.CB) [> 4.3619 = 7.2698 < 9.4508] w=0.4910 to align # Constraint # added constraint: constraint((T0318)V240.CB, (T0318)Q296.CB) [> 2.8811 = 4.8019 < 6.2424] w=0.4880 to align # Constraint # added constraint: constraint((T0318)Q296.CB, (T0318)T355.CB) [> 3.7748 = 6.2914 < 8.1788] w=0.4858 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L298.CB) [> 4.5451 = 7.5751 < 9.8476] w=0.4853 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)D359.CB) [> 3.2730 = 5.4550 < 7.0915] w=0.4816 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)F358.CB) [> 4.0746 = 6.7910 < 8.8283] w=0.4811 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)I357.CB) [> 4.5424 = 7.5707 < 9.8420] w=0.4811 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)I304.CB) [> 4.2549 = 7.0916 < 9.2190] w=0.4765 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)H455.CB) [> 4.2982 = 7.1637 < 9.3128] w=0.4713 to align # Constraint # added constraint: constraint((T0318)E245.CB, (T0318)T355.CB) [> 2.7811 = 4.6351 < 6.0257] w=0.4704 to align # Constraint # added constraint: constraint((T0318)V240.CB, (T0318)L298.CB) [> 4.2379 = 7.0631 < 9.1820] w=0.4699 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)A300.CB) [> 4.3229 = 7.2048 < 9.3662] w=0.4657 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)V305.CB) [> 3.9291 = 6.5485 < 8.5131] w=0.4612 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)E306.CB) [> 4.3820 = 7.3033 < 9.4942] w=0.4599 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)M403.CB) [> 3.0909 = 5.1515 < 6.6969] w=0.4565 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)M403.CB) [> 3.8956 = 6.4927 < 8.4405] w=0.4565 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)M403.CB) [> 2.6680 = 4.4467 < 5.7807] w=0.4565 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)I204.CB) [> 3.9112 = 6.5187 < 8.4743] w=0.4533 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)P402.CB) [> 3.6995 = 6.1658 < 8.0155] w=0.4522 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)P402.CB) [> 3.6770 = 6.1284 < 7.9669] w=0.4522 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)L236.CB) [> 3.5293 = 5.8822 < 7.6469] w=0.4507 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L302.CB) [> 4.2056 = 7.0094 < 9.1122] w=0.4496 to align # Constraint # added constraint: constraint((T0318)T200.CB, (T0318)K291.CB) [> 3.7825 = 6.3041 < 8.1953] w=0.4485 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)L302.CB) [> 4.3837 = 7.3061 < 9.4980] w=0.4485 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)H299.CB) [> 3.1590 = 5.2650 < 6.8444] w=0.4476 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)A354.CB) [> 4.2084 = 7.0140 < 9.1182] w=0.4456 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)A188.CB) [> 3.7237 = 6.2061 < 8.0680] w=0.4443 to align # Constraint # added constraint: constraint((T0318)A348.CB, (T0318)I357.CB) [> 3.4545 = 5.7575 < 7.4847] w=0.4429 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)E306.CB) [> 3.0134 = 5.0223 < 6.5290] w=0.4414 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)M282.CB) [> 2.8189 = 4.6982 < 6.1076] w=0.4391 to align # Constraint # added constraint: constraint((T0318)A285.CB, (T0318)L480.CB) [> 3.4829 = 5.8049 < 7.5463] w=0.4372 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)L456.CB) [> 4.1872 = 6.9787 < 9.0723] w=0.4350 to align # Constraint # added constraint: constraint((T0318)L176.CB, (T0318)E192.CB) [> 4.2679 = 7.1132 < 9.2472] w=0.4341 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)H444.CB) [> 3.3547 = 5.5912 < 7.2685] w=0.4334 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)V234.CB) [> 3.7367 = 6.2278 < 8.0961] w=0.4303 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)L454.CB) [> 3.8665 = 6.4442 < 8.3775] w=0.4303 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)T356.CB) [> 3.2006 = 5.3343 < 6.9346] w=0.4293 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)F358.CB) [> 4.4123 = 7.3538 < 9.5600] w=0.4293 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A279.CB) [> 3.3337 = 5.5562 < 7.2231] w=0.4293 to align # Constraint # added constraint: constraint((T0318)A193.CB, (T0318)A279.CB) [> 4.0888 = 6.8146 < 8.8590] w=0.4272 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)I304.CB) [> 3.9256 = 6.5427 < 8.5055] w=0.4264 to align # Constraint # added constraint: constraint((T0318)E172.CB, (T0318)E192.CB) [> 4.1737 = 6.9561 < 9.0430] w=0.4232 to align # Constraint # added constraint: constraint((T0318)S237.CB, (T0318)A300.CB) [> 4.5738 = 7.6230 < 9.9099] w=0.4229 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)A285.CB) [> 3.7072 = 6.1786 < 8.0322] w=0.4196 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)Y286.CB) [> 3.8769 = 6.4616 < 8.4000] w=0.4196 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)N307.CB) [> 3.2741 = 5.4569 < 7.0940] w=0.4167 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)H455.CB) [> 4.2594 = 7.0991 < 9.2288] w=0.4160 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)L456.CB) [> 4.0240 = 6.7066 < 8.7186] w=0.4160 to align # Constraint # added constraint: constraint((T0318)K203.CB, (T0318)E239.CB) [> 4.2845 = 7.1409 < 9.2831] w=0.4075 to align # Constraint # added constraint: constraint((T0318)K349.CB, (T0318)E449.CB) [> 3.1129 = 5.1882 < 6.7446] w=0.3978 to align # Constraint # added constraint: constraint((T0318)T356.CB, (T0318)D382.CB) [> 4.2222 = 7.0370 < 9.1482] w=0.3974 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)G442.CA) [> 4.5688 = 7.6146 < 9.8990] w=0.3968 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)L352.CB) [> 3.3959 = 5.6598 < 7.3577] w=0.3967 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)P402.CB) [> 4.4122 = 7.3536 < 9.5597] w=0.3936 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)A401.CB) [> 3.0624 = 5.1039 < 6.6351] w=0.3929 to align # Constraint # added constraint: constraint((T0318)T185.CB, (T0318)T229.CB) [> 3.2871 = 5.4785 < 7.1221] w=0.3914 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)A348.CB) [> 3.2489 = 5.4148 < 7.0392] w=0.3902 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)V400.CB) [> 4.3286 = 7.2144 < 9.3787] w=0.3899 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)L399.CB) [> 4.4031 = 7.3384 < 9.5400] w=0.3871 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)V255.CB) [> 3.4060 = 5.6767 < 7.3797] w=0.3867 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)V255.CB) [> 3.2180 = 5.3633 < 6.9722] w=0.3867 to align # Constraint # added constraint: constraint((T0318)P180.CB, (T0318)K273.CB) [> 3.6303 = 6.0504 < 7.8656] w=0.3848 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)V305.CB) [> 3.3712 = 5.6188 < 7.3044] w=0.3832 to align # Constraint # added constraint: constraint((T0318)N182.CB, (T0318)P231.CB) [> 4.1154 = 6.8590 < 8.9166] w=0.3822 to align # Constraint # added constraint: constraint((T0318)I389.CB, (T0318)L456.CB) [> 4.1496 = 6.9160 < 8.9908] w=0.3799 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)L456.CB) [> 4.2124 = 7.0207 < 9.1270] w=0.3797 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)I389.CB) [> 4.2229 = 7.0383 < 9.1497] w=0.3783 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)Y286.CB) [> 3.9928 = 6.6547 < 8.6511] w=0.3760 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)M269.CB) [> 4.1106 = 6.8510 < 8.9064] w=0.3758 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)N307.CB) [> 3.0982 = 5.1637 < 6.7128] w=0.3758 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)N307.CB) [> 3.6164 = 6.0273 < 7.8355] w=0.3758 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)W453.CB) [> 3.8816 = 6.4694 < 8.4102] w=0.3758 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)V328.CB) [> 3.9254 = 6.5423 < 8.5050] w=0.3724 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)L454.CB) [> 3.1426 = 5.2376 < 6.8089] w=0.3724 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)D457.CB) [> 4.2409 = 7.0682 < 9.1886] w=0.3722 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)D457.CB) [> 3.0009 = 5.0016 < 6.5020] w=0.3722 to align # Constraint # added constraint: constraint((T0318)A392.CB, (T0318)L479.CB) [> 3.2634 = 5.4390 < 7.0707] w=0.3721 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)F476.CB) [> 3.9912 = 6.6520 < 8.6476] w=0.3721 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)P473.CB) [> 3.3647 = 5.6078 < 7.2901] w=0.3721 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)G344.CA) [> 3.6678 = 6.1130 < 7.9469] w=0.3706 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)P230.CB) [> 3.5645 = 5.9409 < 7.7232] w=0.3699 to align # Constraint # added constraint: constraint((T0318)V194.CB, (T0318)V234.CB) [> 3.3231 = 5.5384 < 7.2000] w=0.3696 to align # Constraint # added constraint: constraint((T0318)G442.CA, (T0318)W453.CB) [> 4.3306 = 7.2177 < 9.3830] w=0.3654 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)P473.CB) [> 3.6582 = 6.0970 < 7.9261] w=0.3651 to align # Constraint # added constraint: constraint((T0318)E172.CB, (T0318)V196.CB) [> 4.0784 = 6.7974 < 8.8366] w=0.3625 to align # Constraint # added constraint: constraint((T0318)T362.CB, (T0318)I458.CB) [> 3.3125 = 5.5208 < 7.1771] w=0.3604 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)D457.CB) [> 4.0887 = 6.8145 < 8.8588] w=0.3571 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)H455.CB) [> 3.7858 = 6.3096 < 8.2025] w=0.3543 to align # Constraint # added constraint: constraint((T0318)I389.CB, (T0318)L479.CB) [> 3.7439 = 6.2398 < 8.1117] w=0.3504 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)F476.CB) [> 4.0663 = 6.7772 < 8.8104] w=0.3504 to align # Constraint # added constraint: constraint((T0318)A285.CB, (T0318)S477.CB) [> 3.3598 = 5.5996 < 7.2795] w=0.3504 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)V255.CB) [> 4.1825 = 6.9708 < 9.0620] w=0.3458 to align # Constraint # added constraint: constraint((T0318)P180.CB, (T0318)N271.CB) [> 4.0195 = 6.6991 < 8.7089] w=0.3450 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)G281.CA) [> 3.7644 = 6.2739 < 8.1561] w=0.3447 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)S477.CB) [> 3.4224 = 5.7041 < 7.4153] w=0.3434 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)G470.CA) [> 3.4588 = 5.7648 < 7.4942] w=0.3434 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A361.CB) [> 4.0395 = 6.7326 < 8.7523] w=0.3433 to align # Constraint # added constraint: constraint((T0318)T362.CB, (T0318)D457.CB) [> 4.3453 = 7.2421 < 9.4148] w=0.3414 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)D457.CB) [> 3.9897 = 6.6495 < 8.6444] w=0.3414 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)L363.CB) [> 4.0733 = 6.7889 < 8.8256] w=0.3391 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)L363.CB) [> 2.9816 = 4.9693 < 6.4601] w=0.3391 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)K273.CB) [> 2.7421 = 4.5702 < 5.9412] w=0.3337 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)L302.CB) [> 2.4443 = 4.0739 < 5.2961] w=0.3334 to align # Constraint # added constraint: constraint((T0318)T362.CB, (T0318)A459.CB) [> 3.1836 = 5.3060 < 6.8978] w=0.3307 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)T362.CB) [> 3.0290 = 5.0483 < 6.5628] w=0.3292 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)L456.CB) [> 4.1730 = 6.9550 < 9.0415] w=0.3273 to align # Constraint # added constraint: constraint((T0318)V190.CB, (T0318)I304.CB) [> 4.0331 = 6.7217 < 8.7383] w=0.3251 to align # Constraint # added constraint: constraint((T0318)T229.CB, (T0318)V305.CB) [> 4.1158 = 6.8597 < 8.9175] w=0.3250 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)G470.CA) [> 3.2013 = 5.3355 < 6.9361] w=0.3245 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)C303.CB) [> 3.8321 = 6.3868 < 8.3028] w=0.3225 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)C301.CB) [> 4.5159 = 7.5264 < 9.7844] w=0.3216 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)I330.CB) [> 4.1195 = 6.8658 < 8.9255] w=0.3213 to align # Constraint # added constraint: constraint((T0318)D317.CB, (T0318)N331.CB) [> 4.1553 = 6.9254 < 9.0030] w=0.3213 to align # Constraint # added constraint: constraint((T0318)P316.CB, (T0318)T333.CB) [> 3.6041 = 6.0069 < 7.8090] w=0.3213 to align # Constraint # added constraint: constraint((T0318)P316.CB, (T0318)N331.CB) [> 3.5894 = 5.9823 < 7.7770] w=0.3213 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)I458.CB) [> 3.7770 = 6.2950 < 8.1835] w=0.3209 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)L341.CB) [> 4.2282 = 7.0470 < 9.1611] w=0.3190 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)I340.CB) [> 2.9030 = 4.8383 < 6.2897] w=0.3190 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)P231.CB) [> 4.2913 = 7.1522 < 9.2978] w=0.3189 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)M360.CB) [> 4.6228 = 7.7047 < 10.0161] w=0.3188 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)M360.CB) [> 4.2001 = 7.0002 < 9.1003] w=0.3188 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)A288.CB) [> 3.8503 = 6.4172 < 8.3424] w=0.3188 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)S434.CB) [> 2.7187 = 4.5312 < 5.8906] w=0.3187 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)I390.CB) [> 3.6013 = 6.0021 < 7.8027] w=0.3184 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)G344.CA) [> 3.8141 = 6.3568 < 8.2639] w=0.3172 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A361.CB) [> 3.8077 = 6.3462 < 8.2500] w=0.3154 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)A377.CB) [> 2.9872 = 4.9786 < 6.4722] w=0.3148 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)V305.CB) [> 3.9597 = 6.5995 < 8.5794] w=0.3146 to align # Constraint # added constraint: constraint((T0318)T229.CB, (T0318)E306.CB) [> 3.0729 = 5.1215 < 6.6579] w=0.3146 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)I458.CB) [> 4.1393 = 6.8988 < 8.9685] w=0.3137 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)A348.CB) [> 4.5463 = 7.5772 < 9.8504] w=0.3119 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)G281.CA) [> 2.8955 = 4.8259 < 6.2736] w=0.3113 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)K273.CB) [> 4.4784 = 7.4641 < 9.7033] w=0.3113 to align # Constraint # added constraint: constraint((T0318)T179.CB, (T0318)K273.CB) [> 4.3876 = 7.3127 < 9.5065] w=0.3113 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)D334.CB) [> 4.3858 = 7.3097 < 9.5026] w=0.3113 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)E336.CB) [> 3.8286 = 6.3810 < 8.2953] w=0.3113 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)D334.CB) [> 2.5729 = 4.2881 < 5.5746] w=0.3113 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)E336.CB) [> 4.1460 = 6.9100 < 8.9830] w=0.3113 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)A361.CB) [> 4.5813 = 7.6356 < 9.9263] w=0.3105 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)N307.CB) [> 3.4583 = 5.7639 < 7.4931] w=0.3091 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)V254.CB) [> 4.0645 = 6.7741 < 8.8063] w=0.3078 to align # Constraint # added constraint: constraint((T0318)T185.CB, (T0318)P230.CB) [> 4.3615 = 7.2692 < 9.4499] w=0.3059 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)Y347.CB) [> 3.8581 = 6.4301 < 8.3592] w=0.3056 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)Y347.CB) [> 4.5934 = 7.6556 < 9.9523] w=0.3044 to align # Constraint # added constraint: constraint((T0318)I441.CB, (T0318)H455.CB) [> 3.3618 = 5.6031 < 7.2840] w=0.3023 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)I441.CB) [> 4.6615 = 7.7691 < 10.0998] w=0.3023 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)I441.CB) [> 3.9700 = 6.6167 < 8.6017] w=0.3023 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)I441.CB) [> 4.0061 = 6.6769 < 8.6800] w=0.3023 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)N307.CB) [> 4.1495 = 6.9158 < 8.9906] w=0.3011 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)Y256.CB) [> 2.3567 = 3.9279 < 5.1062] w=0.3011 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)L363.CB) [> 3.1594 = 5.2656 < 6.8453] w=0.3011 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)I330.CB) [> 4.3032 = 7.1720 < 9.3236] w=0.3004 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)I304.CB) [> 4.2522 = 7.0870 < 9.2131] w=0.3003 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)V255.CB) [> 3.6209 = 6.0349 < 7.8454] w=0.2998 to align # Constraint # added constraint: constraint((T0318)M403.CB, (T0318)S434.CB) [> 3.7702 = 6.2837 < 8.1688] w=0.2993 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)E336.CB) [> 3.9338 = 6.5563 < 8.5232] w=0.2993 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)D359.CB) [> 4.2803 = 7.1338 < 9.2739] w=0.2993 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)G253.CA) [> 4.4687 = 7.4478 < 9.6821] w=0.2993 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)D275.CB) [> 4.2959 = 7.1599 < 9.3079] w=0.2982 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)M276.CB) [> 3.1328 = 5.2214 < 6.7878] w=0.2982 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)P231.CB) [> 4.5480 = 7.5799 < 9.8539] w=0.2977 to align # Constraint # added constraint: constraint((T0318)V120.CB, (T0318)L163.CB) [> 4.0744 = 6.7906 < 8.8278] w=0.2976 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)L480.CB) [> 3.6114 = 6.0191 < 7.8248] w=0.2972 to align # Constraint # added constraint: constraint((T0318)A335.CB, (T0318)A437.CB) [> 4.3164 = 7.1940 < 9.3523] w=0.2968 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)N308.CB) [> 3.3154 = 5.5256 < 7.1833] w=0.2968 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)I312.CB) [> 3.6442 = 6.0737 < 7.8958] w=0.2966 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)I304.CB) [> 3.5122 = 5.8537 < 7.6098] w=0.2965 to align # Constraint # added constraint: constraint((T0318)I263.CB, (T0318)V309.CB) [> 3.5067 = 5.8444 < 7.5978] w=0.2965 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)G376.CA) [> 4.3880 = 7.3134 < 9.5074] w=0.2958 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)C301.CB) [> 4.3559 = 7.2598 < 9.4378] w=0.2943 to align # Constraint # added constraint: constraint((T0318)E168.CB, (T0318)S287.CB) [> 4.0024 = 6.6706 < 8.6718] w=0.2936 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)E239.CB) [> 4.4875 = 7.4791 < 9.7228] w=0.2934 to align # Constraint # added constraint: constraint((T0318)A280.CB, (T0318)S477.CB) [> 4.5539 = 7.5899 < 9.8668] w=0.2928 to align # Constraint # added constraint: constraint((T0318)G201.CA, (T0318)E239.CB) [> 3.3529 = 5.5881 < 7.2646] w=0.2921 to align # Constraint # added constraint: constraint((T0318)G372.CA, (T0318)A460.CB) [> 3.1066 = 5.1777 < 6.7311] w=0.2892 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)P473.CB) [> 3.2453 = 5.4089 < 7.0315] w=0.2892 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)P473.CB) [> 3.2622 = 5.4370 < 7.0681] w=0.2892 to align # Constraint # added constraint: constraint((T0318)A160.CB, (T0318)E284.CB) [> 3.1580 = 5.2633 < 6.8423] w=0.2874 to align # Constraint # added constraint: constraint((T0318)L289.CB, (T0318)G481.CA) [> 4.4663 = 7.4439 < 9.6771] w=0.2863 to align # Constraint # added constraint: constraint((T0318)E386.CB, (T0318)P402.CB) [> 3.4601 = 5.7668 < 7.4968] w=0.2863 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)L456.CB) [> 4.3007 = 7.1679 < 9.3182] w=0.2857 to align # Constraint # added constraint: constraint((T0318)A280.CB, (T0318)P473.CB) [> 4.2866 = 7.1443 < 9.2876] w=0.2854 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)A279.CB) [> 3.2640 = 5.4400 < 7.0721] w=0.2845 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)V254.CB) [> 3.4428 = 5.7379 < 7.4593] w=0.2845 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)V254.CB) [> 3.9354 = 6.5591 < 8.5268] w=0.2845 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)M272.CB) [> 3.4397 = 5.7328 < 7.4526] w=0.2836 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)G472.CA) [> 4.4587 = 7.4313 < 9.6606] w=0.2820 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)D159.CB) [> 3.8707 = 6.4511 < 8.3865] w=0.2798 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)G281.CA) [> 4.5582 = 7.5970 < 9.8760] w=0.2798 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)V345.CB) [> 3.7573 = 6.2621 < 8.1407] w=0.2798 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)A160.CB) [> 3.4225 = 5.7042 < 7.4154] w=0.2792 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)L163.CB) [> 2.0533 = 3.4222 < 4.4489] w=0.2792 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)S167.CB) [> 2.4566 = 4.0943 < 5.3226] w=0.2792 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)K273.CB) [> 3.5124 = 5.8541 < 7.6103] w=0.2792 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)D275.CB) [> 4.0796 = 6.7993 < 8.8391] w=0.2792 to align # Constraint # added constraint: constraint((T0318)N307.CB, (T0318)D334.CB) [> 4.5408 = 7.5680 < 9.8384] w=0.2792 to align # Constraint # added constraint: constraint((T0318)L189.CB, (T0318)I304.CB) [> 3.3036 = 5.5059 < 7.1577] w=0.2783 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)E306.CB) [> 4.2765 = 7.1276 < 9.2659] w=0.2783 to align # Constraint # added constraint: constraint((T0318)T186.CB, (T0318)V305.CB) [> 3.6661 = 6.1102 < 7.9433] w=0.2783 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)L166.CB) [> 4.4131 = 7.3551 < 9.5617] w=0.2740 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)L189.CB) [> 3.6515 = 6.0858 < 7.9115] w=0.2716 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)G470.CA) [> 3.7062 = 6.1771 < 8.0302] w=0.2711 to align # Constraint # added constraint: constraint((T0318)A174.CB, (T0318)G470.CA) [> 3.3584 = 5.5974 < 7.2766] w=0.2711 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)A460.CB) [> 3.0611 = 5.1019 < 6.6324] w=0.2709 to align # Constraint # added constraint: constraint((T0318)D159.CB, (T0318)E284.CB) [> 3.1477 = 5.2462 < 6.8200] w=0.2704 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)C303.CB) [> 4.3778 = 7.2964 < 9.4853] w=0.2699 to align # Constraint # added constraint: constraint((T0318)S424.CB, (T0318)V436.CB) [> 4.3642 = 7.2736 < 9.4557] w=0.2680 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)A348.CB) [> 4.2503 = 7.0839 < 9.2091] w=0.2668 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)G277.CA) [> 3.1113 = 5.1855 < 6.7412] w=0.2667 to align # Constraint # added constraint: constraint((T0318)F217.CB, (T0318)G344.CA) [> 4.3036 = 7.1726 < 9.3244] w=0.2667 to align # Constraint # added constraint: constraint((T0318)F217.CB, (T0318)Y347.CB) [> 4.3740 = 7.2901 < 9.4771] w=0.2667 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)D359.CB) [> 3.9622 = 6.6037 < 8.5849] w=0.2667 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)V400.CB) [> 3.4504 = 5.7507 < 7.4759] w=0.2667 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)P402.CB) [> 4.4694 = 7.4491 < 9.6838] w=0.2667 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)D457.CB) [> 4.0552 = 6.7586 < 8.7862] w=0.2657 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)D457.CB) [> 3.1851 = 5.3085 < 6.9011] w=0.2657 to align # Constraint # added constraint: constraint((T0318)F346.CB, (T0318)H444.CB) [> 3.3903 = 5.6504 < 7.3456] w=0.2646 to align # Constraint # added constraint: constraint((T0318)I357.CB, (T0318)I445.CB) [> 3.9895 = 6.6491 < 8.6439] w=0.2646 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)L404.CB) [> 4.5725 = 7.6208 < 9.9070] w=0.2646 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)F405.CB) [> 3.9396 = 6.5659 < 8.5357] w=0.2646 to align # Constraint # added constraint: constraint((T0318)T265.CB, (T0318)M276.CB) [> 4.4299 = 7.3831 < 9.5980] w=0.2635 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)P230.CB) [> 4.1508 = 6.9180 < 8.9935] w=0.2614 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)T265.CB) [> 3.9201 = 6.5336 < 8.4936] w=0.2606 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)S310.CB) [> 2.8895 = 4.8159 < 6.2607] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G227.CA, (T0318)E306.CB) [> 3.3065 = 5.5109 < 7.1641] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G227.CA, (T0318)S310.CB) [> 3.5494 = 5.9156 < 7.6903] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G227.CA, (T0318)I312.CB) [> 4.4414 = 7.4023 < 9.6230] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)A279.CB) [> 4.4379 = 7.3965 < 9.6155] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)L283.CB) [> 4.1639 = 6.9398 < 9.0217] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V240.CB, (T0318)F294.CB) [> 3.1877 = 5.3128 < 6.9067] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L341.CB) [> 3.9543 = 6.5906 < 8.5677] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A348.CB) [> 3.5455 = 5.9091 < 7.6818] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)G277.CA) [> 4.6757 = 7.7929 < 10.1307] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)L261.CB) [> 4.6909 = 7.8181 < 10.1636] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A226.CB, (T0318)G260.CA) [> 3.6553 = 6.0921 < 7.9197] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)N314.CB) [> 4.2152 = 7.0253 < 9.1329] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)A313.CB) [> 4.0704 = 6.7840 < 8.8192] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)I312.CB) [> 3.3762 = 5.6270 < 7.3151] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)N307.CB) [> 4.1428 = 6.9046 < 8.9760] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)E306.CB) [> 3.9038 = 6.5064 < 8.4583] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)V305.CB) [> 2.6769 = 4.4614 < 5.7998] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)I340.CB) [> 3.2843 = 5.4738 < 7.1159] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)L339.CB) [> 3.1921 = 5.3202 < 6.9163] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)G337.CA) [> 4.3143 = 7.1905 < 9.3477] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)E336.CB) [> 2.6626 = 4.4377 < 5.7690] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)N314.CB) [> 3.9404 = 6.5674 < 8.5376] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)N307.CB) [> 3.3959 = 5.6598 < 7.3578] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)V305.CB) [> 3.3283 = 5.5472 < 7.2114] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)D334.CB) [> 3.9406 = 6.5676 < 8.5379] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)T333.CB) [> 2.8030 = 4.6717 < 6.0732] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)A313.CB) [> 3.4056 = 5.6761 < 7.3789] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)V309.CB) [> 2.7411 = 4.5684 < 5.9390] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)T333.CB) [> 3.5552 = 5.9254 < 7.7030] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)V309.CB) [> 4.5637 = 7.6062 < 9.8880] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)N307.CB) [> 3.2034 = 5.3390 < 6.9408] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)V309.CB) [> 3.6800 = 6.1334 < 7.9734] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)M272.CB) [> 4.2268 = 7.0446 < 9.1580] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)D275.CB) [> 2.4378 = 4.0629 < 5.2818] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)M272.CB) [> 2.5057 = 4.1761 < 5.4289] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)N308.CB) [> 4.5194 = 7.5324 < 9.7921] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)E306.CB) [> 3.0098 = 5.0163 < 6.5211] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)K273.CB) [> 4.3585 = 7.2641 < 9.4434] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)I340.CB) [> 4.2073 = 7.0122 < 9.1159] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)V305.CB) [> 3.5920 = 5.9867 < 7.7828] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)M276.CB) [> 3.3726 = 5.6209 < 7.3072] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)D275.CB) [> 2.4134 = 4.0223 < 5.2290] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)M272.CB) [> 4.6136 = 7.6893 < 9.9961] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)I340.CB) [> 4.3320 = 7.2200 < 9.3860] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)G277.CA) [> 4.1163 = 6.8604 < 8.9185] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)M276.CB) [> 2.2333 = 3.7222 < 4.8389] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)D275.CB) [> 4.1929 = 6.9882 < 9.0847] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)L341.CB) [> 3.5561 = 5.9268 < 7.7048] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)I340.CB) [> 3.8015 = 6.3359 < 8.2367] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)G337.CA) [> 3.0938 = 5.1564 < 6.7033] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)M276.CB) [> 4.1647 = 6.9412 < 9.0236] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)D275.CB) [> 4.2920 = 7.1534 < 9.2994] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)L341.CB) [> 4.4073 = 7.3455 < 9.5492] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L212.CB, (T0318)P231.CB) [> 3.9393 = 6.5655 < 8.5351] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L212.CB, (T0318)Y221.CB) [> 3.5221 = 5.8701 < 7.6311] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G209.CA, (T0318)A232.CB) [> 4.5161 = 7.5269 < 9.7849] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T185.CB, (T0318)V255.CB) [> 3.3249 = 5.5414 < 7.2039] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)M276.CB) [> 4.4924 = 7.4872 < 9.7334] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)K273.CB) [> 4.5827 = 7.6379 < 9.9292] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)E306.CB) [> 4.3155 = 7.1926 < 9.3503] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)A462.CB) [> 4.4081 = 7.3468 < 9.5508] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I177.CB, (T0318)A280.CB) [> 2.9919 = 4.9865 < 6.4824] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)E284.CB) [> 2.3832 = 3.9720 < 5.1636] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T173.CB, (T0318)L283.CB) [> 4.4406 = 7.4011 < 9.6214] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)E284.CB) [> 3.9990 = 6.6649 < 8.6644] w=0.2602 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A288.CB) [> 2.0989 = 3.4982 < 4.5476] w=0.2602 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A285.CB) [> 3.7260 = 6.2101 < 8.0731] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)S396.CB) [> 4.6446 = 7.7411 < 10.0634] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D165.CB, (T0318)A288.CB) [> 3.4100 = 5.6834 < 7.3884] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)L163.CB) [> 3.8005 = 6.3341 < 8.2344] w=0.2602 to align # Constraint # added constraint: constraint((T0318)S122.CB, (T0318)L163.CB) [> 3.1950 = 5.3250 < 6.9225] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)V254.CB) [> 4.6515 = 7.7525 < 10.0783] w=0.2602 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)L339.CB) [> 3.9704 = 6.6174 < 8.6026] w=0.2602 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)I320.CB) [> 2.8722 = 4.7870 < 6.2231] w=0.2602 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)D318.CB) [> 4.1579 = 6.9299 < 9.0089] w=0.2602 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)N314.CB) [> 3.0477 = 5.0795 < 6.6033] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Y221.CB, (T0318)P231.CB) [> 4.2261 = 7.0436 < 9.1566] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)G344.CA) [> 4.2085 = 7.0141 < 9.1184] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)D343.CB) [> 2.5942 = 4.3237 < 5.6208] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)I340.CB) [> 2.8333 = 4.7221 < 6.1387] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)L339.CB) [> 4.0233 = 6.7056 < 8.7173] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)V305.CB) [> 4.2487 = 7.0811 < 9.2054] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)C303.CB) [> 3.3207 = 5.5346 < 7.1949] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)F233.CB) [> 4.5617 = 7.6029 < 9.8837] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)D343.CB) [> 3.3266 = 5.5443 < 7.2076] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)A342.CB) [> 3.8858 = 6.4764 < 8.4193] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)I340.CB) [> 4.3387 = 7.2312 < 9.4005] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L212.CB, (T0318)F233.CB) [> 3.4321 = 5.7202 < 7.4363] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A215.CB, (T0318)L323.CB) [> 3.8997 = 6.4995 < 8.4494] w=0.2602 to align # Constraint # added constraint: constraint((T0318)F217.CB, (T0318)L323.CB) [> 3.1541 = 5.2568 < 6.8339] w=0.2602 to align # Constraint # added constraint: constraint((T0318)F217.CB, (T0318)D343.CB) [> 2.4484 = 4.0807 < 5.3049] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G218.CA, (T0318)I320.CB) [> 3.4945 = 5.8242 < 7.5715] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G218.CA, (T0318)K321.CB) [> 3.6472 = 6.0787 < 7.9023] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G218.CA, (T0318)M322.CB) [> 4.0629 = 6.7715 < 8.8029] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G218.CA, (T0318)L323.CB) [> 4.2190 = 7.0317 < 9.1411] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G218.CA, (T0318)D343.CB) [> 3.8893 = 6.4821 < 8.4267] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)I320.CB) [> 2.6102 = 4.3503 < 5.6554] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)K321.CB) [> 4.3722 = 7.2870 < 9.4732] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)M322.CB) [> 3.4373 = 5.7289 < 7.4476] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)V328.CB) [> 4.0070 = 6.6784 < 8.6819] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)L339.CB) [> 2.9612 = 4.9353 < 6.4160] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)A437.CB) [> 4.4873 = 7.4788 < 9.7225] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)S434.CB) [> 2.5880 = 4.3134 < 5.6074] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)G431.CA) [> 3.7717 = 6.2861 < 8.1720] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)A460.CB) [> 4.4615 = 7.4359 < 9.6666] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)A459.CB) [> 3.0320 = 5.0533 < 6.5693] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)S434.CB) [> 4.5866 = 7.6444 < 9.9377] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)A459.CB) [> 4.6298 = 7.7164 < 10.0313] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)I445.CB) [> 3.3213 = 5.5355 < 7.1961] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A342.CB, (T0318)H444.CB) [> 2.7836 = 4.6394 < 6.0312] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A342.CB, (T0318)A443.CB) [> 4.6240 = 7.7067 < 10.0187] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A342.CB, (T0318)L440.CB) [> 4.5754 = 7.6257 < 9.9134] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)H444.CB) [> 4.5557 = 7.5928 < 9.8706] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)I441.CB) [> 3.5416 = 5.9027 < 7.6735] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)A361.CB) [> 3.7991 = 6.3319 < 8.2314] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)D359.CB) [> 3.6181 = 6.0301 < 7.8391] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L339.CB, (T0318)N423.CB) [> 3.6947 = 6.1578 < 8.0051] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)I441.CB) [> 3.8242 = 6.3737 < 8.2858] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)L440.CB) [> 3.0661 = 5.1101 < 6.6431] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)A437.CB) [> 3.5049 = 5.8415 < 7.5940] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)N423.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G337.CA, (T0318)A361.CB) [> 3.7916 = 6.3193 < 8.2151] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A335.CB, (T0318)S424.CB) [> 2.9358 = 4.8930 < 6.3608] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A335.CB, (T0318)N423.CB) [> 2.8661 = 4.7768 < 6.2098] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N332.CB, (T0318)S424.CB) [> 2.8940 = 4.8233 < 6.2702] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N332.CB, (T0318)N423.CB) [> 3.9556 = 6.5927 < 8.5705] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N331.CB, (T0318)S424.CB) [> 3.0060 = 5.0100 < 6.5130] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N331.CB, (T0318)N423.CB) [> 3.4516 = 5.7526 < 7.4784] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N331.CB, (T0318)K422.CB) [> 3.3155 = 5.5259 < 7.1837] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I330.CB, (T0318)N423.CB) [> 2.7935 = 4.6559 < 6.0526] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I330.CB, (T0318)L339.CB) [> 3.9374 = 6.5623 < 8.5310] w=0.2602 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)N423.CB) [> 3.9579 = 6.5965 < 8.5755] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G442.CA, (T0318)H455.CB) [> 4.6672 = 7.7786 < 10.1122] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G438.CA, (T0318)H455.CB) [> 3.3274 = 5.5457 < 7.2094] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N423.CB, (T0318)L440.CB) [> 4.0162 = 6.6936 < 8.7017] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M421.CB, (T0318)A443.CB) [> 3.4016 = 5.6693 < 7.3701] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M421.CB, (T0318)L440.CB) [> 3.8557 = 6.4261 < 8.3540] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)L439.CB) [> 4.5444 = 7.5741 < 9.8463] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A406.CB, (T0318)L439.CB) [> 4.6449 = 7.7415 < 10.0640] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A406.CB, (T0318)A435.CB) [> 4.3957 = 7.3261 < 9.5239] w=0.2602 to align # Constraint # added constraint: constraint((T0318)F405.CB, (T0318)L439.CB) [> 3.8737 = 6.4561 < 8.3930] w=0.2602 to align # Constraint # added constraint: constraint((T0318)F405.CB, (T0318)A435.CB) [> 4.4095 = 7.3491 < 9.5538] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L404.CB, (T0318)A435.CB) [> 3.6777 = 6.1294 < 7.9683] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M403.CB, (T0318)A435.CB) [> 3.7204 = 6.2006 < 8.0608] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V400.CB, (T0318)L456.CB) [> 4.4530 = 7.4217 < 9.6482] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)S434.CB) [> 2.5687 = 4.2812 < 5.5655] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)A459.CB) [> 2.7588 = 4.5980 < 5.9774] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)A460.CB) [> 2.9411 = 4.9019 < 6.3725] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A368.CB, (T0318)A460.CB) [> 2.3921 = 3.9868 < 5.1829] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L370.CB, (T0318)M403.CB) [> 4.4644 = 7.4407 < 9.6729] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L370.CB, (T0318)S434.CB) [> 3.5251 = 5.8752 < 7.6377] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)A460.CB) [> 3.7420 = 6.2367 < 8.1077] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)P461.CB) [> 2.9074 = 4.8456 < 6.2993] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)S434.CB) [> 3.4703 = 5.7838 < 7.5189] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)A460.CB) [> 4.3085 = 7.1809 < 9.3351] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)F405.CB) [> 3.1057 = 5.1761 < 6.7290] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)A435.CB) [> 4.5368 = 7.5613 < 9.8297] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)G438.CA) [> 3.1429 = 5.2381 < 6.8095] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)I389.CB) [> 4.6084 = 7.6807 < 9.9849] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I390.CB, (T0318)P402.CB) [> 4.3947 = 7.3245 < 9.5218] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D318.CB, (T0318)E329.CB) [> 4.4300 = 7.3833 < 9.5983] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D317.CB, (T0318)I330.CB) [> 4.5043 = 7.5072 < 9.7593] w=0.2602 to align # Constraint # added constraint: constraint((T0318)P316.CB, (T0318)N332.CB) [> 3.8678 = 6.4464 < 8.3803] w=0.2602 to align # Constraint # added constraint: constraint((T0318)P316.CB, (T0318)I330.CB) [> 4.1796 = 6.9661 < 9.0559] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K315.CB, (T0318)T333.CB) [> 4.3746 = 7.2910 < 9.4783] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N314.CB, (T0318)I330.CB) [> 3.5992 = 5.9987 < 7.7983] w=0.2602 to align # Constraint # added constraint: constraint((T0318)A313.CB, (T0318)T333.CB) [> 4.1770 = 6.9617 < 9.0503] w=0.2602 to align # Constraint # added constraint: constraint((T0318)N307.CB, (T0318)E336.CB) [> 2.8657 = 4.7761 < 6.2090] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)I340.CB) [> 3.8039 = 6.3398 < 8.2418] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)A462.CB) [> 3.9101 = 6.5168 < 8.4719] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)I304.CB) [> 4.0954 = 6.8257 < 8.8734] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D275.CB, (T0318)T362.CB) [> 3.1183 = 5.1972 < 6.7564] w=0.2602 to align # Constraint # added constraint: constraint((T0318)D275.CB, (T0318)N307.CB) [> 4.7103 = 7.8505 < 10.2056] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R274.CB, (T0318)A462.CB) [> 3.3198 = 5.5331 < 7.1930] w=0.2602 to align # Constraint # added constraint: constraint((T0318)R274.CB, (T0318)T362.CB) [> 3.8675 = 6.4459 < 8.3796] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K264.CB, (T0318)D334.CB) [> 3.9269 = 6.5448 < 8.5083] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I263.CB, (T0318)D334.CB) [> 4.6879 = 7.8131 < 10.1571] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Q262.CB, (T0318)T333.CB) [> 2.4083 = 4.0138 < 5.2180] w=0.2602 to align # Constraint # added constraint: constraint((T0318)Q262.CB, (T0318)N332.CB) [> 2.8774 = 4.7956 < 6.2343] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)T333.CB) [> 2.8705 = 4.7841 < 6.2193] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)P316.CB) [> 3.6523 = 6.0872 < 7.9133] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)K315.CB) [> 3.4983 = 5.8304 < 7.5796] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)N314.CB) [> 4.0445 = 6.7409 < 8.7631] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)A313.CB) [> 3.2829 = 5.4715 < 7.1130] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)V309.CB) [> 3.3890 = 5.6484 < 7.3429] w=0.2602 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)E336.CB) [> 4.6071 = 7.6785 < 9.9821] w=0.2602 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)K422.CB) [> 3.1139 = 5.1899 < 6.7469] w=0.2602 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)M421.CB) [> 4.4123 = 7.3539 < 9.5601] w=0.2602 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)A419.CB) [> 2.3901 = 3.9836 < 5.1786] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)N423.CB) [> 3.2818 = 5.4697 < 7.1106] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)K422.CB) [> 4.5181 = 7.5301 < 9.7892] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)M421.CB) [> 3.3641 = 5.6069 < 7.2889] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)D420.CB) [> 4.2733 = 7.1221 < 9.2588] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)A419.CB) [> 3.4592 = 5.7653 < 7.4948] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)A342.CB) [> 4.1300 = 6.8833 < 8.9483] w=0.2602 to align # Constraint # added constraint: constraint((T0318)V328.CB, (T0318)L339.CB) [> 3.9318 = 6.5531 < 8.5190] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T327.CB, (T0318)M421.CB) [> 4.5396 = 7.5660 < 9.8358] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T327.CB, (T0318)D420.CB) [> 2.9193 = 4.8656 < 6.3253] w=0.2602 to align # Constraint # added constraint: constraint((T0318)T327.CB, (T0318)A419.CB) [> 2.3179 = 3.8631 < 5.0221] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K326.CB, (T0318)A443.CB) [> 4.0469 = 6.7449 < 8.7683] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K326.CB, (T0318)M421.CB) [> 3.8491 = 6.4152 < 8.3397] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)E329.CB) [> 2.9128 = 4.8547 < 6.3111] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)A419.CB) [> 2.7494 = 4.5823 < 5.9569] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I320.CB, (T0318)I330.CB) [> 3.6586 = 6.0977 < 7.9270] w=0.2602 to align # Constraint # added constraint: constraint((T0318)I320.CB, (T0318)L339.CB) [> 4.0940 = 6.8233 < 8.8703] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M322.CB, (T0318)A342.CB) [> 2.9592 = 4.9319 < 6.4115] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M322.CB, (T0318)D343.CB) [> 3.5042 = 5.8403 < 7.5923] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M322.CB, (T0318)F346.CB) [> 3.9777 = 6.6296 < 8.6185] w=0.2602 to align # Constraint # added constraint: constraint((T0318)M322.CB, (T0318)H444.CB) [> 4.0773 = 6.7955 < 8.8341] w=0.2602 to align # Constraint # added constraint: constraint((T0318)L323.CB, (T0318)A342.CB) [> 4.5350 = 7.5583 < 9.8258] w=0.2602 to align # Constraint # added constraint: constraint((T0318)S324.CB, (T0318)F346.CB) [> 2.7433 = 4.5721 < 5.9438] w=0.2602 to align # Constraint # added constraint: constraint((T0318)S324.CB, (T0318)H444.CB) [> 3.5704 = 5.9507 < 7.7359] w=0.2602 to align # Constraint # added constraint: constraint((T0318)K326.CB, (T0318)D420.CB) [> 2.6957 = 4.4929 < 5.8408] w=0.2602 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)Y347.CB) [> 4.2456 = 7.0760 < 9.1988] w=0.2535 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)M276.CB) [> 4.5957 = 7.6594 < 9.9573] w=0.2533 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)M272.CB) [> 3.6639 = 6.1065 < 7.9384] w=0.2533 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A279.CB) [> 4.3672 = 7.2787 < 9.4623] w=0.2533 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)M276.CB) [> 2.7323 = 4.5539 < 5.9201] w=0.2533 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)E192.CB) [> 4.4105 = 7.3509 < 9.5561] w=0.2533 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)A280.CB) [> 3.1924 = 5.3206 < 6.9168] w=0.2533 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)G277.CA) [> 3.8467 = 6.4111 < 8.3344] w=0.2533 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)M276.CB) [> 3.0496 = 5.0827 < 6.6075] w=0.2533 to align # Constraint # added constraint: constraint((T0318)V161.CB, (T0318)A280.CB) [> 4.7130 = 7.8549 < 10.2114] w=0.2533 to align # Constraint # added constraint: constraint((T0318)A160.CB, (T0318)A280.CB) [> 2.9036 = 4.8393 < 6.2911] w=0.2533 to align # Constraint # added constraint: constraint((T0318)T156.CB, (T0318)E284.CB) [> 4.5581 = 7.5968 < 9.8758] w=0.2533 to align # Constraint # added constraint: constraint((T0318)L155.CB, (T0318)A288.CB) [> 3.4287 = 5.7145 < 7.4289] w=0.2533 to align # Constraint # added constraint: constraint((T0318)L155.CB, (T0318)A285.CB) [> 3.6977 = 6.1628 < 8.0116] w=0.2533 to align # Constraint # added constraint: constraint((T0318)D153.CB, (T0318)A288.CB) [> 2.9537 = 4.9229 < 6.3998] w=0.2533 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)M379.CB) [> 4.0027 = 6.6711 < 8.6724] w=0.2533 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)V345.CB) [> 4.1197 = 6.8662 < 8.9261] w=0.2533 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)Y347.CB) [> 4.6825 = 7.8042 < 10.1454] w=0.2533 to align # Constraint # added constraint: constraint((T0318)I304.CB, (T0318)Y347.CB) [> 4.6445 = 7.7409 < 10.0632] w=0.2533 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)V345.CB) [> 2.8330 = 4.7217 < 6.1382] w=0.2533 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)V345.CB) [> 4.7311 = 7.8852 < 10.2508] w=0.2533 to align # Constraint # added constraint: constraint((T0318)S202.CB, (T0318)A300.CB) [> 4.6000 = 7.6667 < 9.9668] w=0.2533 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)N307.CB) [> 4.0126 = 6.6877 < 8.6940] w=0.2533 to align # Constraint # added constraint: constraint((T0318)T265.CB, (T0318)N307.CB) [> 4.1749 = 6.9581 < 9.0456] w=0.2531 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)S477.CB) [> 3.1270 = 5.2116 < 6.7751] w=0.2505 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)H455.CB) [> 3.9084 = 6.5140 < 8.4682] w=0.2498 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)L302.CB) [> 4.3342 = 7.2237 < 9.3908] w=0.2481 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)L363.CB) [> 4.6777 = 7.7961 < 10.1349] w=0.2466 to align # Constraint # added constraint: constraint((T0318)D178.CB, (T0318)R274.CB) [> 4.2055 = 7.0092 < 9.1119] w=0.2463 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)G438.CA) [> 3.9298 = 6.5497 < 8.5147] w=0.2457 to align # Constraint # added constraint: constraint((T0318)G393.CA, (T0318)L479.CB) [> 4.2120 = 7.0200 < 9.1260] w=0.2429 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)N307.CB) [> 3.0933 = 5.1556 < 6.7022] w=0.2421 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)C303.CB) [> 4.5442 = 7.5737 < 9.8459] w=0.2421 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)K264.CB) [> 3.8800 = 6.4666 < 8.4066] w=0.2390 to align # Constraint # added constraint: constraint((T0318)L113.CB, (T0318)C152.CB) [> 3.4716 = 5.7859 < 7.5217] w=0.2385 to align # Constraint # added constraint: constraint((T0318)E116.CB, (T0318)D159.CB) [> 4.4701 = 7.4501 < 9.6852] w=0.2385 to align # Constraint # added constraint: constraint((T0318)F410.CB, (T0318)L439.CB) [> 2.6466 = 4.4110 < 5.7344] w=0.2385 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)N425.CB) [> 3.2636 = 5.4392 < 7.0710] w=0.2385 to align # Constraint # added constraint: constraint((T0318)I263.CB, (T0318)M276.CB) [> 4.1280 = 6.8800 < 8.9440] w=0.2357 to align # Constraint # added constraint: constraint((T0318)V124.CB, (T0318)S167.CB) [> 4.2513 = 7.0855 < 9.2112] w=0.2347 to align # Constraint # added constraint: constraint((T0318)K349.CB, (T0318)L451.CB) [> 4.7015 = 7.8359 < 10.1866] w=0.2343 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)I357.CB) [> 4.2168 = 7.0280 < 9.1364] w=0.2341 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)I304.CB) [> 4.0503 = 6.7505 < 8.7757] w=0.2333 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)F358.CB) [> 4.5225 = 7.5375 < 9.7988] w=0.2308 to align # Constraint # added constraint: constraint((T0318)N182.CB, (T0318)V255.CB) [> 3.3220 = 5.5367 < 7.1977] w=0.2299 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)D343.CB) [> 2.5417 = 4.2362 < 5.5071] w=0.2282 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)D343.CB) [> 4.4919 = 7.4865 < 9.7325] w=0.2278 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)F294.CB) [> 4.4377 = 7.3962 < 9.6150] w=0.2278 to align # Constraint # added constraint: constraint((T0318)K349.CB, (T0318)G450.CA) [> 4.4558 = 7.4264 < 9.6543] w=0.2278 to align # Constraint # added constraint: constraint((T0318)K264.CB, (T0318)N307.CB) [> 3.2380 = 5.3967 < 7.0157] w=0.2253 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A474.CB) [> 4.0141 = 6.6901 < 8.6972] w=0.2242 to align # Constraint # added constraint: constraint((T0318)E284.CB, (T0318)S477.CB) [> 3.3142 = 5.5237 < 7.1809] w=0.2212 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)S477.CB) [> 3.0026 = 5.0044 < 6.5057] w=0.2212 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)L283.CB) [> 4.6311 = 7.7186 < 10.0341] w=0.2211 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)A280.CB) [> 4.5960 = 7.6600 < 9.9580] w=0.2211 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)P433.CB) [> 4.1970 = 6.9950 < 9.0936] w=0.2188 to align # Constraint # added constraint: constraint((T0318)S396.CB, (T0318)T478.CB) [> 3.0667 = 5.1112 < 6.6445] w=0.2176 to align # Constraint # added constraint: constraint((T0318)R274.CB, (T0318)E463.CB) [> 3.9631 = 6.6052 < 8.5868] w=0.2168 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)F162.CB) [> 3.9623 = 6.6038 < 8.5850] w=0.2168 to align # Constraint # added constraint: constraint((T0318)L409.CB, (T0318)A435.CB) [> 2.6633 = 4.4389 < 5.7705] w=0.2168 to align # Constraint # added constraint: constraint((T0318)F410.CB, (T0318)G442.CA) [> 4.6354 = 7.7256 < 10.0433] w=0.2168 to align # Constraint # added constraint: constraint((T0318)E284.CB, (T0318)P473.CB) [> 3.1623 = 5.2705 < 6.8517] w=0.2159 to align # Constraint # added constraint: constraint((T0318)L289.CB, (T0318)L480.CB) [> 3.3971 = 5.6619 < 7.3605] w=0.2159 to align # Constraint # added constraint: constraint((T0318)Q296.CB, (T0318)Y483.CB) [> 3.9319 = 6.5531 < 8.5191] w=0.2159 to align # Constraint # added constraint: constraint((T0318)G393.CA, (T0318)L475.CB) [> 3.0555 = 5.0925 < 6.6203] w=0.2159 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)A300.CB) [> 4.3615 = 7.2691 < 9.4499] w=0.2155 to align # Constraint # added constraint: constraint((T0318)D413.CB, (T0318)L440.CB) [> 3.1281 = 5.2134 < 6.7775] w=0.2147 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)I458.CB) [> 3.9541 = 6.5901 < 8.5672] w=0.2141 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)C303.CB) [> 4.3718 = 7.2863 < 9.4722] w=0.2133 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)P270.CB) [> 4.1315 = 6.8859 < 8.9516] w=0.2124 to align # Constraint # added constraint: constraint((T0318)T179.CB, (T0318)T265.CB) [> 3.5726 = 5.9543 < 7.7406] w=0.2124 to align # Constraint # added constraint: constraint((T0318)S243.CB, (T0318)Q296.CB) [> 2.9808 = 4.9681 < 6.4585] w=0.2123 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)V464.CB) [> 4.3365 = 7.2276 < 9.3958] w=0.2122 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)D359.CB) [> 4.1837 = 6.9728 < 9.0647] w=0.2118 to align # Constraint # added constraint: constraint((T0318)D318.CB, (T0318)V345.CB) [> 3.0331 = 5.0553 < 6.5718] w=0.2118 to align # Constraint # added constraint: constraint((T0318)D318.CB, (T0318)G344.CA) [> 3.9526 = 6.5876 < 8.5639] w=0.2118 to align # Constraint # added constraint: constraint((T0318)N308.CB, (T0318)D343.CB) [> 2.8519 = 4.7532 < 6.1791] w=0.2101 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)D343.CB) [> 4.3616 = 7.2693 < 9.4501] w=0.2101 to align # Constraint # added constraint: constraint((T0318)I304.CB, (T0318)D343.CB) [> 4.0662 = 6.7771 < 8.8102] w=0.2101 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)D343.CB) [> 3.9523 = 6.5871 < 8.5633] w=0.2101 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)A474.CB) [> 2.9844 = 4.9739 < 6.4661] w=0.2097 to align # Constraint # added constraint: constraint((T0318)L440.CB, (T0318)W453.CB) [> 2.6269 = 4.3782 < 5.6917] w=0.2096 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)P432.CB) [> 3.5917 = 5.9861 < 7.7820] w=0.2096 to align # Constraint # added constraint: constraint((T0318)G438.CA, (T0318)W453.CB) [> 4.1234 = 6.8724 < 8.9341] w=0.2088 to align # Constraint # added constraint: constraint((T0318)G393.CA, (T0318)L414.CB) [> 3.3029 = 5.5048 < 7.1563] w=0.2088 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)G268.CA) [> 4.1276 = 6.8794 < 8.9432] w=0.2062 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)T229.CB) [> 3.2888 = 5.4813 < 7.1257] w=0.2028 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)A401.CB) [> 4.4563 = 7.4271 < 9.6553] w=0.2017 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)L399.CB) [> 2.3812 = 3.9686 < 5.1592] w=0.2017 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)L399.CB) [> 3.9571 = 6.5952 < 8.5737] w=0.2017 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)A459.CB) [> 3.4678 = 5.7797 < 7.5136] w=0.2017 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)I458.CB) [> 3.6741 = 6.1236 < 7.9607] w=0.2017 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)I458.CB) [> 4.1019 = 6.8365 < 8.8875] w=0.2017 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)F405.CB) [> 4.3306 = 7.2176 < 9.3829] w=0.1995 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)P433.CB) [> 4.1171 = 6.8618 < 8.9204] w=0.1989 to align # Constraint # added constraint: constraint((T0318)E245.CB, (T0318)F294.CB) [> 3.5084 = 5.8474 < 7.6016] w=0.1984 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)V254.CB) [> 4.3842 = 7.3070 < 9.4992] w=0.1977 to align # Constraint # added constraint: constraint((T0318)I263.CB, (T0318)I304.CB) [> 3.6628 = 6.1047 < 7.9361] w=0.1976 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)I458.CB) [> 4.7796 = 7.9660 < 10.3558] w=0.1952 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)D457.CB) [> 2.5628 = 4.2713 < 5.5527] w=0.1952 to align # Constraint # added constraint: constraint((T0318)T364.CB, (T0318)A437.CB) [> 3.0803 = 5.1338 < 6.6739] w=0.1952 to align # Constraint # added constraint: constraint((T0318)T364.CB, (T0318)S434.CB) [> 2.8298 = 4.7163 < 6.1312] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)G438.CA) [> 4.6657 = 7.7762 < 10.1091] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)A437.CB) [> 3.2571 = 5.4285 < 7.0571] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)S434.CB) [> 4.3526 = 7.2543 < 9.4306] w=0.1952 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)I458.CB) [> 3.4902 = 5.8170 < 7.5622] w=0.1952 to align # Constraint # added constraint: constraint((T0318)S371.CB, (T0318)A401.CB) [> 3.4683 = 5.7806 < 7.5147] w=0.1952 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)P461.CB) [> 3.3304 = 5.5507 < 7.2159] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)A460.CB) [> 4.6266 = 7.7111 < 10.0244] w=0.1952 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)D457.CB) [> 3.3063 = 5.5104 < 7.1636] w=0.1952 to align # Constraint # added constraint: constraint((T0318)A437.CB, (T0318)D457.CB) [> 4.3802 = 7.3004 < 9.4904] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G438.CA, (T0318)D457.CB) [> 4.5917 = 7.6528 < 9.9486] w=0.1952 to align # Constraint # added constraint: constraint((T0318)F34.CB, (T0318)R64.CB) [> 4.3026 = 7.1710 < 9.3223] w=0.1952 to align # Constraint # added constraint: constraint((T0318)Y117.CB, (T0318)D159.CB) [> 2.4109 = 4.0181 < 5.2236] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G219.CA, (T0318)L323.CB) [> 4.6639 = 7.7732 < 10.1052] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)N308.CB) [> 4.6461 = 7.7435 < 10.0666] w=0.1952 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)Y483.CB) [> 4.2834 = 7.1390 < 9.2807] w=0.1952 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)L363.CB) [> 4.0550 = 6.7584 < 8.7859] w=0.1952 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)E306.CB) [> 4.7052 = 7.8419 < 10.1945] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)M272.CB) [> 4.7255 = 7.8759 < 10.2386] w=0.1952 to align # Constraint # added constraint: constraint((T0318)D317.CB, (T0318)I418.CB) [> 4.3861 = 7.3102 < 9.5032] w=0.1952 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)I418.CB) [> 3.2358 = 5.3929 < 7.0108] w=0.1952 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)S416.CB) [> 3.0652 = 5.1087 < 6.6413] w=0.1952 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)I418.CB) [> 2.7880 = 4.6466 < 6.0406] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G337.CA, (T0318)L363.CB) [> 3.7901 = 6.3169 < 8.2119] w=0.1952 to align # Constraint # added constraint: constraint((T0318)R338.CB, (T0318)L363.CB) [> 4.1487 = 6.9145 < 8.9888] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)A361.CB) [> 4.7030 = 7.8384 < 10.1899] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)L302.CB) [> 4.5053 = 7.5088 < 9.7615] w=0.1952 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)D343.CB) [> 4.0742 = 6.7903 < 8.8274] w=0.1952 to align # Constraint # added constraint: constraint((T0318)K326.CB, (T0318)A342.CB) [> 4.6494 = 7.7490 < 10.0737] w=0.1952 to align # Constraint # added constraint: constraint((T0318)K326.CB, (T0318)A419.CB) [> 4.7152 = 7.8587 < 10.2163] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L370.CB, (T0318)A460.CB) [> 4.3278 = 7.2129 < 9.3768] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)K422.CB) [> 4.4864 = 7.4774 < 9.7206] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)V436.CB) [> 3.7894 = 6.3158 < 8.2105] w=0.1952 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)T164.CB) [> 3.6833 = 6.1388 < 7.9805] w=0.1952 to align # Constraint # added constraint: constraint((T0318)R129.CB, (T0318)R171.CB) [> 3.5521 = 5.9202 < 7.6963] w=0.1952 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)A115.CB) [> 3.5963 = 5.9939 < 7.7920] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)H238.CB) [> 4.7598 = 7.9329 < 10.3128] w=0.1952 to align # Constraint # added constraint: constraint((T0318)E211.CB, (T0318)F233.CB) [> 3.9527 = 6.5878 < 8.5641] w=0.1952 to align # Constraint # added constraint: constraint((T0318)G260.CA, (T0318)N314.CB) [> 4.2201 = 7.0336 < 9.1437] w=0.1952 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)E306.CB) [> 4.5443 = 7.5739 < 9.8460] w=0.1952 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)C303.CB) [> 4.4981 = 7.4969 < 9.7460] w=0.1952 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)A342.CB) [> 4.6104 = 7.6839 < 9.9891] w=0.1952 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)F476.CB) [> 4.2466 = 7.0777 < 9.2011] w=0.1943 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)L480.CB) [> 4.2168 = 7.0280 < 9.1364] w=0.1943 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)F476.CB) [> 4.4983 = 7.4971 < 9.7463] w=0.1943 to align # Constraint # added constraint: constraint((T0318)E388.CB, (T0318)L479.CB) [> 3.4687 = 5.7812 < 7.5156] w=0.1943 to align # Constraint # added constraint: constraint((T0318)E388.CB, (T0318)Y483.CB) [> 4.1901 = 6.9834 < 9.0785] w=0.1943 to align # Constraint # added constraint: constraint((T0318)A392.CB, (T0318)L475.CB) [> 3.0463 = 5.0771 < 6.6002] w=0.1943 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)Y69.CB) [> 4.3861 = 7.3101 < 9.5031] w=0.1938 to align # Constraint # added constraint: constraint((T0318)S54.CB, (T0318)G63.CA) [> 3.6374 = 6.0624 < 7.8811] w=0.1938 to align # Constraint # added constraint: constraint((T0318)L121.CB, (T0318)S167.CB) [> 3.8651 = 6.4418 < 8.3743] w=0.1938 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)T364.CB) [> 2.9697 = 4.9495 < 6.4344] w=0.1936 to align # Constraint # added constraint: constraint((T0318)A126.CB, (T0318)V170.CB) [> 3.9721 = 6.6202 < 8.6063] w=0.1925 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A435.CB) [> 3.8852 = 6.4753 < 8.4179] w=0.1924 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)L439.CB) [> 3.7741 = 6.2902 < 8.1773] w=0.1924 to align # Constraint # added constraint: constraint((T0318)D318.CB, (T0318)D343.CB) [> 3.6513 = 6.0855 < 7.9111] w=0.1922 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)M403.CB) [> 3.9334 = 6.5556 < 8.5223] w=0.1919 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)L404.CB) [> 4.6734 = 7.7891 < 10.1258] w=0.1919 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)G372.CA) [> 4.3872 = 7.3120 < 9.5056] w=0.1919 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)S371.CB) [> 3.5106 = 5.8509 < 7.6062] w=0.1919 to align # Constraint # added constraint: constraint((T0318)V23.CB, (T0318)P66.CB) [> 4.1928 = 6.9880 < 9.0844] w=0.1913 to align # Constraint # added constraint: constraint((T0318)A90.CB, (T0318)H123.CB) [> 3.3601 = 5.6002 < 7.2802] w=0.1886 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)L352.CB) [> 3.4035 = 5.6725 < 7.3742] w=0.1867 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)E463.CB) [> 3.9185 = 6.5308 < 8.4900] w=0.1851 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)E306.CB) [> 4.0599 = 6.7666 < 8.7965] w=0.1845 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)L456.CB) [> 3.7326 = 6.2210 < 8.0873] w=0.1833 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)L480.CB) [> 3.9434 = 6.5724 < 8.5441] w=0.1770 to align # Constraint # added constraint: constraint((T0318)Q296.CB, (T0318)T484.CB) [> 2.8946 = 4.8244 < 6.2717] w=0.1769 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)A435.CB) [> 4.2409 = 7.0681 < 9.1885] w=0.1742 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)L475.CB) [> 3.8574 = 6.4290 < 8.3576] w=0.1735 to align # Constraint # added constraint: constraint((T0318)W52.CB, (T0318)H65.CB) [> 3.5421 = 5.9035 < 7.6746] w=0.1735 to align # Constraint # added constraint: constraint((T0318)W52.CB, (T0318)P66.CB) [> 3.9428 = 6.5714 < 8.5428] w=0.1735 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)G63.CA) [> 3.8136 = 6.3560 < 8.2628] w=0.1735 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)R64.CB) [> 3.2696 = 5.4494 < 7.0842] w=0.1735 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)H65.CB) [> 4.0490 = 6.7484 < 8.7729] w=0.1735 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)P66.CB) [> 4.3061 = 7.1768 < 9.3299] w=0.1735 to align # Constraint # added constraint: constraint((T0318)Y117.CB, (T0318)A160.CB) [> 2.8046 = 4.6743 < 6.0766] w=0.1735 to align # Constraint # added constraint: constraint((T0318)Y117.CB, (T0318)L163.CB) [> 3.9883 = 6.6471 < 8.6412] w=0.1735 to align # Constraint # added constraint: constraint((T0318)P118.CB, (T0318)A160.CB) [> 4.3155 = 7.1926 < 9.3503] w=0.1735 to align # Constraint # added constraint: constraint((T0318)P118.CB, (T0318)F162.CB) [> 3.2215 = 5.3691 < 6.9799] w=0.1735 to align # Constraint # added constraint: constraint((T0318)S51.CB, (T0318)P66.CB) [> 3.4230 = 5.7049 < 7.4164] w=0.1735 to align # Constraint # added constraint: constraint((T0318)S51.CB, (T0318)H65.CB) [> 4.0288 = 6.7147 < 8.7291] w=0.1735 to align # Constraint # added constraint: constraint((T0318)D50.CB, (T0318)H68.CB) [> 3.6821 = 6.1368 < 7.9779] w=0.1735 to align # Constraint # added constraint: constraint((T0318)F34.CB, (T0318)P66.CB) [> 4.4259 = 7.3765 < 9.5894] w=0.1735 to align # Constraint # added constraint: constraint((T0318)K26.CB, (T0318)R64.CB) [> 4.5750 = 7.6249 < 9.9124] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G24.CA, (T0318)F34.CB) [> 4.6267 = 7.7112 < 10.0245] w=0.1735 to align # Constraint # added constraint: constraint((T0318)V23.CB, (T0318)F34.CB) [> 4.3407 = 7.2346 < 9.4049] w=0.1735 to align # Constraint # added constraint: constraint((T0318)S19.CB, (T0318)E35.CB) [> 4.4425 = 7.4042 < 9.6255] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)D430.CB) [> 4.4393 = 7.3988 < 9.6185] w=0.1735 to align # Constraint # added constraint: constraint((T0318)P461.CB, (T0318)G472.CA) [> 4.0003 = 6.6671 < 8.6673] w=0.1735 to align # Constraint # added constraint: constraint((T0318)P461.CB, (T0318)Y471.CB) [> 2.7135 = 4.5225 < 5.8793] w=0.1735 to align # Constraint # added constraint: constraint((T0318)N425.CB, (T0318)L439.CB) [> 4.5995 = 7.6658 < 9.9656] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G397.CA, (T0318)L475.CB) [> 4.6317 = 7.7194 < 10.0353] w=0.1735 to align # Constraint # added constraint: constraint((T0318)S396.CB, (T0318)L475.CB) [> 2.9829 = 4.9715 < 6.4630] w=0.1735 to align # Constraint # added constraint: constraint((T0318)S396.CB, (T0318)A474.CB) [> 2.5400 = 4.2333 < 5.5033] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A392.CB, (T0318)F476.CB) [> 4.6285 = 7.7141 < 10.0284] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)Y471.CB) [> 4.5241 = 7.5402 < 9.8022] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)P433.CB) [> 1.7230 = 2.8716 < 3.7331] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)P432.CB) [> 4.2107 = 7.0179 < 9.1232] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)P433.CB) [> 4.1278 = 6.8797 < 8.9436] w=0.1735 to align # Constraint # added constraint: constraint((T0318)Q296.CB, (T0318)L480.CB) [> 4.0682 = 6.7803 < 8.8143] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A126.CB, (T0318)S167.CB) [> 3.2320 = 5.3867 < 7.0027] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A174.CB, (T0318)G468.CA) [> 3.2192 = 5.3653 < 6.9749] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A174.CB, (T0318)T469.CB) [> 4.0823 = 6.8038 < 8.8449] w=0.1735 to align # Constraint # added constraint: constraint((T0318)D178.CB, (T0318)G468.CA) [> 3.3134 = 5.5224 < 7.1791] w=0.1735 to align # Constraint # added constraint: constraint((T0318)R274.CB, (T0318)G468.CA) [> 3.6914 = 6.1523 < 7.9981] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)G470.CA) [> 4.3862 = 7.3103 < 9.5034] w=0.1735 to align # Constraint # added constraint: constraint((T0318)A280.CB, (T0318)G470.CA) [> 4.0017 = 6.6696 < 8.6704] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)G470.CA) [> 3.7748 = 6.2914 < 8.1788] w=0.1735 to align # Constraint # added constraint: constraint((T0318)E284.CB, (T0318)G470.CA) [> 4.4691 = 7.4484 < 9.6830] w=0.1735 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)C301.CB) [> 4.6906 = 7.8177 < 10.1630] w=0.1734 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)R338.CB) [> 2.8476 = 4.7459 < 6.1697] w=0.1708 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)F358.CB) [> 3.8907 = 6.4845 < 8.4299] w=0.1701 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)F358.CB) [> 3.6903 = 6.1504 < 7.9956] w=0.1701 to align # Constraint # added constraint: constraint((T0318)E388.CB, (T0318)L454.CB) [> 4.5319 = 7.5531 < 9.8191] w=0.1700 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)G277.CA) [> 4.2967 = 7.1612 < 9.3095] w=0.1700 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)I263.CB) [> 3.2741 = 5.4568 < 7.0938] w=0.1700 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)I263.CB) [> 3.3439 = 5.5731 < 7.2451] w=0.1700 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)K264.CB) [> 3.9210 = 6.5350 < 8.4954] w=0.1700 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)M269.CB) [> 3.1080 = 5.1800 < 6.7340] w=0.1700 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)T229.CB) [> 1.9754 = 3.2923 < 4.2800] w=0.1689 to align # Constraint # added constraint: constraint((T0318)I183.CB, (T0318)G227.CA) [> 4.2708 = 7.1181 < 9.2535] w=0.1689 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)D318.CB) [> 3.3513 = 5.5854 < 7.2611] w=0.1689 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)D318.CB) [> 4.5899 = 7.6499 < 9.9449] w=0.1689 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)L370.CB) [> 2.8545 = 4.7575 < 6.1847] w=0.1689 to align # Constraint # added constraint: constraint((T0318)G84.CA, (T0318)I127.CB) [> 4.3712 = 7.2854 < 9.4710] w=0.1681 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)I458.CB) [> 4.4238 = 7.3730 < 9.5849] w=0.1676 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)L370.CB) [> 2.9923 = 4.9872 < 6.4833] w=0.1666 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)L302.CB) [> 4.1034 = 6.8390 < 8.8906] w=0.1664 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)V305.CB) [> 4.0010 = 6.6683 < 8.6688] w=0.1661 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)L144.CB) [> 3.4132 = 5.6887 < 7.3953] w=0.1651 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)I304.CB) [> 4.4104 = 7.3506 < 9.5558] w=0.1648 to align # Constraint # added constraint: constraint((T0318)N182.CB, (T0318)L261.CB) [> 3.9660 = 6.6101 < 8.5931] w=0.1633 to align # Constraint # added constraint: constraint((T0318)P461.CB, (T0318)L479.CB) [> 3.6750 = 6.1249 < 7.9624] w=0.1617 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)K422.CB) [> 3.8817 = 6.4695 < 8.4103] w=0.1599 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)P432.CB) [> 3.2647 = 5.4411 < 7.0735] w=0.1580 to align # Constraint # added constraint: constraint((T0318)G372.CA, (T0318)I458.CB) [> 4.2925 = 7.1542 < 9.3004] w=0.1580 to align # Constraint # added constraint: constraint((T0318)I263.CB, (T0318)A279.CB) [> 3.8108 = 6.3513 < 8.2566] w=0.1569 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)I263.CB) [> 4.3039 = 7.1733 < 9.3252] w=0.1569 to align # Constraint # added constraint: constraint((T0318)I458.CB, (T0318)G472.CA) [> 4.0462 = 6.7436 < 8.7668] w=0.1526 to align # Constraint # added constraint: constraint((T0318)G393.CA, (T0318)G412.CA) [> 3.5114 = 5.8524 < 7.6081] w=0.1518 to align # Constraint # added constraint: constraint((T0318)A462.CB, (T0318)Y471.CB) [> 4.2598 = 7.0997 < 9.2296] w=0.1518 to align # Constraint # added constraint: constraint((T0318)T18.CB, (T0318)A72.CB) [> 4.2458 = 7.0763 < 9.1992] w=0.1518 to align # Constraint # added constraint: constraint((T0318)K44.CB, (T0318)H68.CB) [> 4.4760 = 7.4601 < 9.6981] w=0.1518 to align # Constraint # added constraint: constraint((T0318)L67.CB, (T0318)T86.CB) [> 3.1665 = 5.2775 < 6.8608] w=0.1518 to align # Constraint # added constraint: constraint((T0318)F134.CB, (T0318)P180.CB) [> 4.4152 = 7.3586 < 9.5662] w=0.1518 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)G472.CA) [> 4.4365 = 7.3941 < 9.6124] w=0.1518 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)P231.CB) [> 2.6162 = 4.3603 < 5.6684] w=0.1517 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)A354.CB) [> 3.0621 = 5.1034 < 6.6344] w=0.1506 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)T258.CB) [> 4.0618 = 6.7697 < 8.8006] w=0.1498 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)G259.CA) [> 4.2974 = 7.1624 < 9.3111] w=0.1498 to align # Constraint # added constraint: constraint((T0318)L113.CB, (T0318)V151.CB) [> 4.1307 = 6.8844 < 8.9497] w=0.1497 to align # Constraint # added constraint: constraint((T0318)V112.CB, (T0318)C152.CB) [> 3.1411 = 5.2351 < 6.8056] w=0.1497 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)C152.CB) [> 3.4143 = 5.6905 < 7.3977] w=0.1497 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)N147.CB) [> 3.6955 = 6.1591 < 8.0068] w=0.1497 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)V146.CB) [> 3.6805 = 6.1342 < 7.9744] w=0.1497 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)S434.CB) [> 4.4532 = 7.4219 < 9.6485] w=0.1495 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)A459.CB) [> 4.2647 = 7.1079 < 9.2402] w=0.1486 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)D149.CB) [> 3.6936 = 6.1559 < 8.0027] w=0.1475 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)M360.CB) [> 2.8636 = 4.7727 < 6.2045] w=0.1468 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)D359.CB) [> 4.3000 = 7.1667 < 9.3167] w=0.1468 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)M360.CB) [> 4.3110 = 7.1850 < 9.3405] w=0.1468 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)D359.CB) [> 3.7420 = 6.2366 < 8.1076] w=0.1468 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)F358.CB) [> 4.6058 = 7.6764 < 9.9792] w=0.1468 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)F358.CB) [> 3.6231 = 6.0385 < 7.8500] w=0.1468 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)V146.CB) [> 3.6056 = 6.0093 < 7.8120] w=0.1467 to align # Constraint # added constraint: constraint((T0318)S371.CB, (T0318)I458.CB) [> 3.2353 = 5.3921 < 7.0097] w=0.1464 to align # Constraint # added constraint: constraint((T0318)V124.CB, (T0318)I148.CB) [> 4.2477 = 7.0796 < 9.2034] w=0.1443 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)G481.CA) [> 3.5798 = 5.9664 < 7.7564] w=0.1421 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)C303.CB) [> 4.0014 = 6.6690 < 8.6697] w=0.1420 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)A435.CB) [> 3.2278 = 5.3797 < 6.9937] w=0.1402 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)P432.CB) [> 2.7871 = 4.6452 < 6.0388] w=0.1398 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)G337.CA) [> 3.5504 = 5.9173 < 7.6926] w=0.1395 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)E336.CB) [> 3.3345 = 5.5575 < 7.2247] w=0.1395 to align # Constraint # added constraint: constraint((T0318)V124.CB, (T0318)L166.CB) [> 4.2247 = 7.0412 < 9.1535] w=0.1392 to align # Constraint # added constraint: constraint((T0318)M272.CB, (T0318)T364.CB) [> 4.4942 = 7.4904 < 9.7375] w=0.1391 to align # Constraint # added constraint: constraint((T0318)G63.CA, (T0318)P99.CB) [> 4.0316 = 6.7194 < 8.7352] w=0.1384 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)L363.CB) [> 3.9723 = 6.6205 < 8.6067] w=0.1375 to align # Constraint # added constraint: constraint((T0318)L439.CB, (T0318)L451.CB) [> 2.7565 = 4.5942 < 5.9724] w=0.1359 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)Y102.CB) [> 3.4455 = 5.7425 < 7.4653] w=0.1357 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)I263.CB) [> 3.7578 = 6.2630 < 8.1419] w=0.1353 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)S434.CB) [> 4.6995 = 7.8325 < 10.1822] w=0.1353 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)E329.CB) [> 3.8055 = 6.3425 < 8.2452] w=0.1340 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)E329.CB) [> 4.2784 = 7.1307 < 9.2699] w=0.1340 to align # Constraint # added constraint: constraint((T0318)Q262.CB, (T0318)N307.CB) [> 3.4873 = 5.8121 < 7.5557] w=0.1338 to align # Constraint # added constraint: constraint((T0318)K394.CB, (T0318)G412.CA) [> 3.4152 = 5.6919 < 7.3995] w=0.1337 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)V436.CB) [> 3.6256 = 6.0427 < 7.8555] w=0.1337 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A435.CB) [> 3.7908 = 6.3181 < 8.2135] w=0.1337 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A435.CB) [> 4.5814 = 7.6356 < 9.9263] w=0.1337 to align # Constraint # added constraint: constraint((T0318)L184.CB, (T0318)N307.CB) [> 3.8744 = 6.4573 < 8.3945] w=0.1336 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)I304.CB) [> 3.6508 = 6.0846 < 7.9100] w=0.1323 to align # Constraint # added constraint: constraint((T0318)T200.CB, (T0318)G293.CA) [> 3.6130 = 6.0216 < 7.8281] w=0.1322 to align # Constraint # added constraint: constraint((T0318)K264.CB, (T0318)D275.CB) [> 4.7744 = 7.9573 < 10.3445] w=0.1312 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)H238.CB) [> 3.9697 = 6.6161 < 8.6010] w=0.1312 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)D420.CB) [> 4.0988 = 6.8314 < 8.8808] w=0.1306 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)I418.CB) [> 4.3368 = 7.2281 < 9.3965] w=0.1306 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)I418.CB) [> 2.8537 = 4.7562 < 6.1830] w=0.1306 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)A419.CB) [> 3.3644 = 5.6073 < 7.2895] w=0.1306 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)D420.CB) [> 2.4097 = 4.0162 < 5.2211] w=0.1306 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)I418.CB) [> 3.4838 = 5.8064 < 7.5483] w=0.1306 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)A419.CB) [> 3.8173 = 6.3621 < 8.2707] w=0.1306 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)I418.CB) [> 4.6743 = 7.7906 < 10.1277] w=0.1306 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)A419.CB) [> 2.5479 = 4.2464 < 5.5204] w=0.1306 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)D420.CB) [> 4.4289 = 7.3814 < 9.5958] w=0.1306 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)A419.CB) [> 4.0515 = 6.7525 < 8.7782] w=0.1306 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)D420.CB) [> 2.6772 = 4.4620 < 5.8007] w=0.1306 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)D420.CB) [> 4.4241 = 7.3735 < 9.5856] w=0.1306 to align # Constraint # added constraint: constraint((T0318)G393.CA, (T0318)A419.CB) [> 4.2880 = 7.1467 < 9.2907] w=0.1306 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)I247.CB) [> 4.2162 = 7.0269 < 9.1350] w=0.1302 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)V112.CB) [> 3.2193 = 5.3654 < 6.9751] w=0.1301 to align # Constraint # added constraint: constraint((T0318)R129.CB, (T0318)S167.CB) [> 3.7622 = 6.2703 < 8.1514] w=0.1301 to align # Constraint # added constraint: constraint((T0318)P87.CB, (T0318)A126.CB) [> 2.8441 = 4.7401 < 6.1621] w=0.1301 to align # Constraint # added constraint: constraint((T0318)T86.CB, (T0318)F114.CB) [> 3.9760 = 6.6268 < 8.6148] w=0.1301 to align # Constraint # added constraint: constraint((T0318)I458.CB, (T0318)Y471.CB) [> 3.8860 = 6.4767 < 8.4198] w=0.1301 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)L113.CB) [> 4.5880 = 7.6466 < 9.9406] w=0.1301 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)F114.CB) [> 3.3171 = 5.5286 < 7.1871] w=0.1301 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)V112.CB) [> 2.6977 = 4.4962 < 5.8450] w=0.1301 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)L113.CB) [> 3.9622 = 6.6037 < 8.5849] w=0.1301 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)F114.CB) [> 4.7099 = 7.8498 < 10.2048] w=0.1301 to align # Constraint # added constraint: constraint((T0318)S54.CB, (T0318)R64.CB) [> 3.5861 = 5.9768 < 7.7699] w=0.1301 to align # Constraint # added constraint: constraint((T0318)A61.CB, (T0318)H110.CB) [> 4.4757 = 7.4595 < 9.6974] w=0.1301 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)F114.CB) [> 3.4361 = 5.7269 < 7.4449] w=0.1301 to align # Constraint # added constraint: constraint((T0318)P228.CB, (T0318)N308.CB) [> 4.6781 = 7.7968 < 10.1358] w=0.1301 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A280.CB) [> 4.7372 = 7.8953 < 10.2639] w=0.1301 to align # Constraint # added constraint: constraint((T0318)K315.CB, (T0318)I330.CB) [> 4.5202 = 7.5336 < 9.7937] w=0.1301 to align # Constraint # added constraint: constraint((T0318)I320.CB, (T0318)E329.CB) [> 4.7298 = 7.8830 < 10.2480] w=0.1301 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)A459.CB) [> 4.7253 = 7.8754 < 10.2381] w=0.1301 to align # Constraint # added constraint: constraint((T0318)L17.CB, (T0318)F45.CB) [> 4.0970 = 6.8284 < 8.8769] w=0.1301 to align # Constraint # added constraint: constraint((T0318)T47.CB, (T0318)H68.CB) [> 2.8121 = 4.6868 < 6.0928] w=0.1301 to align # Constraint # added constraint: constraint((T0318)T47.CB, (T0318)E70.CB) [> 2.9876 = 4.9794 < 6.4732] w=0.1301 to align # Constraint # added constraint: constraint((T0318)A80.CB, (T0318)D119.CB) [> 3.3896 = 5.6493 < 7.3441] w=0.1301 to align # Constraint # added constraint: constraint((T0318)T364.CB, (T0318)P433.CB) [> 2.9637 = 4.9394 < 6.4213] w=0.1301 to align # Constraint # added constraint: constraint((T0318)Q367.CB, (T0318)P433.CB) [> 4.5810 = 7.6350 < 9.9255] w=0.1301 to align # Constraint # added constraint: constraint((T0318)W369.CB, (T0318)P433.CB) [> 4.6379 = 7.7298 < 10.0487] w=0.1301 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)L302.CB) [> 4.6394 = 7.7323 < 10.0520] w=0.1301 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)D359.CB) [> 4.5367 = 7.5612 < 9.8295] w=0.1301 to align # Constraint # added constraint: constraint((T0318)T327.CB, (T0318)I418.CB) [> 4.5378 = 7.5630 < 9.8319] w=0.1301 to align # Constraint # added constraint: constraint((T0318)E329.CB, (T0318)S417.CB) [> 4.2045 = 7.0075 < 9.1097] w=0.1301 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)A435.CB) [> 4.7419 = 7.9031 < 10.2740] w=0.1301 to align # Constraint # added constraint: constraint((T0318)A368.CB, (T0318)A462.CB) [> 4.7580 = 7.9300 < 10.3090] w=0.1301 to align # Constraint # added constraint: constraint((T0318)G372.CA, (T0318)P461.CB) [> 4.4480 = 7.4133 < 9.6372] w=0.1301 to align # Constraint # added constraint: constraint((T0318)D382.CB, (T0318)G448.CA) [> 3.6676 = 6.1126 < 7.9464] w=0.1301 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)L426.CB) [> 3.0466 = 5.0778 < 6.6011] w=0.1301 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)M429.CB) [> 4.4991 = 7.4985 < 9.7481] w=0.1301 to align # Constraint # added constraint: constraint((T0318)K415.CB, (T0318)L426.CB) [> 3.7127 = 6.1878 < 8.0442] w=0.1301 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)V120.CB) [> 3.3580 = 5.5966 < 7.2756] w=0.1301 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)V124.CB) [> 3.0908 = 5.1514 < 6.6968] w=0.1301 to align # Constraint # added constraint: constraint((T0318)Q262.CB, (T0318)A335.CB) [> 4.6577 = 7.7628 < 10.0916] w=0.1301 to align # Constraint # added constraint: constraint((T0318)V196.CB, (T0318)E284.CB) [> 4.7853 = 7.9755 < 10.3682] w=0.1301 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)Y471.CB) [> 4.4184 = 7.3641 < 9.5733] w=0.1301 to align # Constraint # added constraint: constraint((T0318)M403.CB, (T0318)H455.CB) [> 4.3651 = 7.2752 < 9.4578] w=0.1288 to align # Constraint # added constraint: constraint((T0318)H65.CB, (T0318)I93.CB) [> 3.4523 = 5.7538 < 7.4799] w=0.1288 to align # Constraint # added constraint: constraint((T0318)F45.CB, (T0318)L67.CB) [> 4.1481 = 6.9135 < 8.9876] w=0.1288 to align # Constraint # added constraint: constraint((T0318)H65.CB, (T0318)Y94.CB) [> 4.1119 = 6.8532 < 8.9091] w=0.1288 to align # Constraint # added constraint: constraint((T0318)S371.CB, (T0318)A459.CB) [> 3.6859 = 6.1432 < 7.9862] w=0.1281 to align # Constraint # added constraint: constraint((T0318)T265.CB, (T0318)R274.CB) [> 4.3634 = 7.2724 < 9.4541] w=0.1281 to align # Constraint # added constraint: constraint((T0318)L97.CB, (T0318)V146.CB) [> 3.5940 = 5.9899 < 7.7869] w=0.1280 to align # Constraint # added constraint: constraint((T0318)V120.CB, (T0318)V151.CB) [> 4.2508 = 7.0847 < 9.2101] w=0.1280 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)L370.CB) [> 4.7402 = 7.9004 < 10.2705] w=0.1280 to align # Constraint # added constraint: constraint((T0318)K264.CB, (T0318)C303.CB) [> 4.5002 = 7.5004 < 9.7505] w=0.1268 to align # Constraint # added constraint: constraint((T0318)K264.CB, (T0318)I304.CB) [> 3.5401 = 5.9001 < 7.6702] w=0.1268 to align # Constraint # added constraint: constraint((T0318)A90.CB, (T0318)A126.CB) [> 2.6410 = 4.4016 < 5.7221] w=0.1258 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)A72.CB) [> 3.5320 = 5.8866 < 7.6526] w=0.1249 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)L166.CB) [> 3.6161 = 6.0269 < 7.8349] w=0.1247 to align # Constraint # added constraint: constraint((T0318)H91.CB, (T0318)A126.CB) [> 3.2148 = 5.3580 < 6.9654] w=0.1247 to align # Constraint # added constraint: constraint((T0318)E70.CB, (T0318)D79.CB) [> 4.2871 = 7.1452 < 9.2888] w=0.1247 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)I148.CB) [> 3.9331 = 6.5552 < 8.5217] w=0.1246 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)I148.CB) [> 4.0864 = 6.8106 < 8.8539] w=0.1245 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)V328.CB) [> 4.6628 = 7.7713 < 10.1026] w=0.1234 to align # Constraint # added constraint: constraint((T0318)L414.CB, (T0318)S424.CB) [> 4.2927 = 7.1546 < 9.3009] w=0.1227 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)S434.CB) [> 2.8618 = 4.7697 < 6.2006] w=0.1227 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)V146.CB) [> 3.7446 = 6.2409 < 8.1132] w=0.1226 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)P432.CB) [> 4.4012 = 7.3353 < 9.5359] w=0.1218 to align # Constraint # added constraint: constraint((T0318)T297.CB, (T0318)T356.CB) [> 4.2564 = 7.0941 < 9.2223] w=0.1212 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)V170.CB) [> 3.8446 = 6.4077 < 8.3300] w=0.1209 to align # Constraint # added constraint: constraint((T0318)L20.CB, (T0318)L71.CB) [> 4.1127 = 6.8545 < 8.9108] w=0.1209 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)T364.CB) [> 2.9300 = 4.8833 < 6.3483] w=0.1186 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)G393.CA) [> 4.7839 = 7.9731 < 10.3650] w=0.1186 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)A335.CB) [> 4.1356 = 6.8927 < 8.9604] w=0.1172 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)V328.CB) [> 2.9043 = 4.8405 < 6.2927] w=0.1169 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)V328.CB) [> 4.2416 = 7.0693 < 9.1901] w=0.1169 to align # Constraint # added constraint: constraint((T0318)P311.CB, (T0318)V328.CB) [> 4.0558 = 6.7597 < 8.7876] w=0.1169 to align # Constraint # added constraint: constraint((T0318)H65.CB, (T0318)P99.CB) [> 4.4550 = 7.4249 < 9.6524] w=0.1167 to align # Constraint # added constraint: constraint((T0318)L261.CB, (T0318)C303.CB) [> 3.3219 = 5.5366 < 7.1975] w=0.1166 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)V328.CB) [> 4.0142 = 6.6904 < 8.6975] w=0.1162 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)M269.CB) [> 3.0159 = 5.0264 < 6.5344] w=0.1156 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)M276.CB) [> 4.5395 = 7.5658 < 9.8356] w=0.1156 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)M269.CB) [> 2.5161 = 4.1935 < 5.4516] w=0.1156 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)G337.CA) [> 3.1438 = 5.2397 < 6.8116] w=0.1156 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)V255.CB) [> 3.8834 = 6.4723 < 8.4140] w=0.1156 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)V254.CB) [> 4.4439 = 7.4066 < 9.6285] w=0.1156 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)L440.CB) [> 3.9469 = 6.5781 < 8.5516] w=0.1156 to align # Constraint # added constraint: constraint((T0318)T380.CB, (T0318)G431.CA) [> 4.2791 = 7.1318 < 9.2713] w=0.1156 to align # Constraint # added constraint: constraint((T0318)E306.CB, (T0318)S434.CB) [> 3.9451 = 6.5752 < 8.5478] w=0.1156 to align # Constraint # added constraint: constraint((T0318)G372.CA, (T0318)E463.CB) [> 3.3448 = 5.5746 < 7.2470] w=0.1155 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)A300.CB) [> 4.2178 = 7.0297 < 9.1386] w=0.1154 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)S310.CB) [> 4.0837 = 6.8061 < 8.8479] w=0.1148 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)A462.CB) [> 4.0483 = 6.7472 < 8.7714] w=0.1147 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)A462.CB) [> 3.1945 = 5.3241 < 6.9214] w=0.1147 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)A462.CB) [> 4.2663 = 7.1104 < 9.2436] w=0.1147 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)M421.CB) [> 3.9515 = 6.5858 < 8.5616] w=0.1145 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)K422.CB) [> 2.9992 = 4.9987 < 6.4983] w=0.1145 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)M421.CB) [> 3.3916 = 5.6527 < 7.3485] w=0.1145 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)K422.CB) [> 4.3649 = 7.2748 < 9.4573] w=0.1145 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)I458.CB) [> 4.1554 = 6.9256 < 9.0033] w=0.1130 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)Q262.CB) [> 3.8704 = 6.4506 < 8.3858] w=0.1122 to align # Constraint # added constraint: constraint((T0318)T229.CB, (T0318)I304.CB) [> 4.0114 = 6.6857 < 8.6914] w=0.1117 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)S417.CB) [> 3.2257 = 5.3762 < 6.9891] w=0.1116 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)S417.CB) [> 3.7996 = 6.3326 < 8.2324] w=0.1116 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)V309.CB) [> 2.9485 = 4.9142 < 6.3884] w=0.1104 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)V309.CB) [> 2.8851 = 4.8086 < 6.2512] w=0.1104 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)N307.CB) [> 2.7875 = 4.6459 < 6.0397] w=0.1104 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)N307.CB) [> 4.4994 = 7.4990 < 9.7487] w=0.1104 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)V309.CB) [> 3.6671 = 6.1119 < 7.9455] w=0.1104 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L363.CB) [> 4.3341 = 7.2234 < 9.3904] w=0.1104 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)Y347.CB) [> 4.3950 = 7.3250 < 9.5225] w=0.1104 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)A378.CB) [> 4.5158 = 7.5263 < 9.7842] w=0.1104 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)M379.CB) [> 4.3093 = 7.1822 < 9.3369] w=0.1104 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)A378.CB) [> 3.6330 = 6.0549 < 7.8714] w=0.1104 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)D343.CB) [> 4.6085 = 7.6808 < 9.9850] w=0.1104 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)V309.CB) [> 3.5584 = 5.9306 < 7.7098] w=0.1104 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)D420.CB) [> 4.6431 = 7.7386 < 10.0601] w=0.1100 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)N332.CB) [> 3.5022 = 5.8370 < 7.5881] w=0.1097 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)V328.CB) [> 3.4992 = 5.8320 < 7.5816] w=0.1097 to align # Constraint # added constraint: constraint((T0318)S237.CB, (T0318)T327.CB) [> 3.7003 = 6.1672 < 8.0173] w=0.1097 to align # Constraint # added constraint: constraint((T0318)H246.CB, (T0318)T327.CB) [> 3.9273 = 6.5456 < 8.5092] w=0.1097 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)T327.CB) [> 3.2948 = 5.4914 < 7.1388] w=0.1097 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)V328.CB) [> 3.8463 = 6.4106 < 8.3337] w=0.1097 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)V328.CB) [> 3.7084 = 6.1807 < 8.0349] w=0.1097 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)E329.CB) [> 3.8718 = 6.4530 < 8.3889] w=0.1097 to align # Constraint # added constraint: constraint((T0318)G197.CA, (T0318)V234.CB) [> 4.3548 = 7.2579 < 9.4353] w=0.1088 to align # Constraint # added constraint: constraint((T0318)W52.CB, (T0318)G63.CA) [> 3.9762 = 6.6269 < 8.6150] w=0.1084 to align # Constraint # added constraint: constraint((T0318)W52.CB, (T0318)R64.CB) [> 4.3072 = 7.1786 < 9.3322] w=0.1084 to align # Constraint # added constraint: constraint((T0318)L67.CB, (T0318)P87.CB) [> 3.5858 = 5.9763 < 7.7693] w=0.1084 to align # Constraint # added constraint: constraint((T0318)L67.CB, (T0318)A90.CB) [> 3.2238 = 5.3729 < 6.9848] w=0.1084 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)R83.CB) [> 3.6763 = 6.1272 < 7.9653] w=0.1084 to align # Constraint # added constraint: constraint((T0318)A80.CB, (T0318)E116.CB) [> 3.9247 = 6.5411 < 8.5034] w=0.1084 to align # Constraint # added constraint: constraint((T0318)G84.CA, (T0318)V120.CB) [> 4.0155 = 6.6925 < 8.7002] w=0.1084 to align # Constraint # added constraint: constraint((T0318)T47.CB, (T0318)Y69.CB) [> 3.6078 = 6.0130 < 7.8169] w=0.1084 to align # Constraint # added constraint: constraint((T0318)K37.CB, (T0318)N53.CB) [> 3.6860 = 6.1434 < 7.9865] w=0.1084 to align # Constraint # added constraint: constraint((T0318)F34.CB, (T0318)I56.CB) [> 3.8609 = 6.4348 < 8.3652] w=0.1084 to align # Constraint # added constraint: constraint((T0318)T33.CB, (T0318)S57.CB) [> 3.0463 = 5.0772 < 6.6004] w=0.1084 to align # Constraint # added constraint: constraint((T0318)L29.CB, (T0318)R58.CB) [> 4.0399 = 6.7332 < 8.7531] w=0.1084 to align # Constraint # added constraint: constraint((T0318)L29.CB, (T0318)S57.CB) [> 4.2989 = 7.1649 < 9.3144] w=0.1084 to align # Constraint # added constraint: constraint((T0318)V109.CB, (T0318)V124.CB) [> 4.4515 = 7.4192 < 9.6449] w=0.1084 to align # Constraint # added constraint: constraint((T0318)R83.CB, (T0318)H123.CB) [> 3.0517 = 5.0861 < 6.6119] w=0.1084 to align # Constraint # added constraint: constraint((T0318)R83.CB, (T0318)D119.CB) [> 2.7987 = 4.6645 < 6.0639] w=0.1084 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)D178.CB) [> 2.6928 = 4.4880 < 5.8344] w=0.1084 to align # Constraint # added constraint: constraint((T0318)F45.CB, (T0318)P66.CB) [> 3.9338 = 6.5564 < 8.5233] w=0.1084 to align # Constraint # added constraint: constraint((T0318)F111.CB, (T0318)I148.CB) [> 3.7954 = 6.3256 < 8.2233] w=0.1063 to align # Constraint # added constraint: constraint((T0318)V109.CB, (T0318)N147.CB) [> 4.3779 = 7.2964 < 9.4853] w=0.1063 to align # Constraint # added constraint: constraint((T0318)I59.CB, (T0318)L71.CB) [> 3.9715 = 6.6192 < 8.6049] w=0.1063 to align # Constraint # added constraint: constraint((T0318)R129.CB, (T0318)V170.CB) [> 3.8783 = 6.4639 < 8.4031] w=0.1057 to align # Constraint # added constraint: constraint((T0318)F134.CB, (T0318)R175.CB) [> 3.8312 = 6.3854 < 8.3010] w=0.1057 to align # Constraint # added constraint: constraint((T0318)I127.CB, (T0318)I148.CB) [> 2.8768 = 4.7946 < 6.2330] w=0.1042 to align # Constraint # added constraint: constraint((T0318)L113.CB, (T0318)I148.CB) [> 3.9096 = 6.5160 < 8.4708] w=0.1041 to align # Constraint # added constraint: constraint((T0318)V23.CB, (T0318)I75.CB) [> 3.3651 = 5.6084 < 7.2909] w=0.1030 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)I458.CB) [> 4.6041 = 7.6736 < 9.9756] w=0.1027 to align # Constraint # added constraint: constraint((T0318)S424.CB, (T0318)A437.CB) [> 4.4267 = 7.3778 < 9.5911] w=0.1023 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)V305.CB) [> 4.5919 = 7.6532 < 9.9492] w=0.1013 to align # Constraint # added constraint: constraint((T0318)G372.CA, (T0318)A459.CB) [> 2.8024 = 4.6706 < 6.0718] w=0.1006 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)D359.CB) [> 4.4387 = 7.3978 < 9.6171] w=0.1000 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)M282.CB) [> 3.4237 = 5.7061 < 7.4179] w=0.1000 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)D257.CB) [> 3.4700 = 5.7833 < 7.5182] w=0.0987 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)K415.CB) [> 4.3155 = 7.1924 < 9.3502] w=0.0972 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)N425.CB) [> 2.4872 = 4.1454 < 5.3890] w=0.0972 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)L414.CB) [> 3.2546 = 5.4244 < 7.0517] w=0.0972 to align # Constraint # added constraint: constraint((T0318)A377.CB, (T0318)L414.CB) [> 3.7877 = 6.3129 < 8.2068] w=0.0972 to align # Constraint # added constraint: constraint((T0318)A395.CB, (T0318)G412.CA) [> 4.5250 = 7.5417 < 9.8042] w=0.0972 to align # Constraint # added constraint: constraint((T0318)C152.CB, (T0318)L166.CB) [> 2.8064 = 4.6774 < 6.0806] w=0.0969 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)A460.CB) [> 3.6833 = 6.1388 < 7.9805] w=0.0966 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)A460.CB) [> 3.7704 = 6.2841 < 8.1693] w=0.0966 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)A460.CB) [> 4.2384 = 7.0639 < 9.1831] w=0.0966 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)A460.CB) [> 4.4409 = 7.4015 < 9.6219] w=0.0966 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)A460.CB) [> 2.4904 = 4.1507 < 5.3960] w=0.0966 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)A460.CB) [> 4.5321 = 7.5535 < 9.8195] w=0.0966 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)T327.CB) [> 4.4030 = 7.3383 < 9.5398] w=0.0965 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)G365.CA) [> 3.5953 = 5.9922 < 7.7899] w=0.0950 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)G472.CA) [> 4.0245 = 6.7075 < 8.7197] w=0.0950 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)G468.CA) [> 3.4497 = 5.7496 < 7.4744] w=0.0940 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)T469.CB) [> 4.3137 = 7.1895 < 9.3464] w=0.0940 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)M421.CB) [> 3.2353 = 5.3923 < 7.0099] w=0.0940 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)G472.CA) [> 4.0169 = 6.6949 < 8.7034] w=0.0936 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)R274.CB) [> 3.3719 = 5.6199 < 7.3058] w=0.0926 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)V436.CB) [> 4.7122 = 7.8537 < 10.2098] w=0.0926 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)E329.CB) [> 3.9943 = 6.6571 < 8.6542] w=0.0902 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)L74.CB) [> 2.2121 = 3.6869 < 4.7929] w=0.0867 to align # Constraint # added constraint: constraint((T0318)V41.CB, (T0318)R64.CB) [> 3.3164 = 5.5273 < 7.1855] w=0.0867 to align # Constraint # added constraint: constraint((T0318)F38.CB, (T0318)R64.CB) [> 3.0219 = 5.0365 < 6.5475] w=0.0867 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)L74.CB) [> 3.0927 = 5.1545 < 6.7008] w=0.0867 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)I75.CB) [> 4.0010 = 6.6683 < 8.6688] w=0.0867 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)T76.CB) [> 2.3642 = 3.9403 < 5.1224] w=0.0867 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)T88.CB) [> 4.1386 = 6.8977 < 8.9670] w=0.0867 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)N89.CB) [> 3.8358 = 6.3930 < 8.3110] w=0.0867 to align # Constraint # added constraint: constraint((T0318)I56.CB, (T0318)T88.CB) [> 3.2985 = 5.4976 < 7.1468] w=0.0867 to align # Constraint # added constraint: constraint((T0318)R58.CB, (T0318)E96.CB) [> 3.2286 = 5.3810 < 6.9953] w=0.0867 to align # Constraint # added constraint: constraint((T0318)N101.CB, (T0318)D149.CB) [> 4.2632 = 7.1054 < 9.2371] w=0.0867 to align # Constraint # added constraint: constraint((T0318)N101.CB, (T0318)V150.CB) [> 3.6454 = 6.0757 < 7.8983] w=0.0867 to align # Constraint # added constraint: constraint((T0318)L370.CB, (T0318)P432.CB) [> 4.6715 = 7.7858 < 10.1215] w=0.0867 to align # Constraint # added constraint: constraint((T0318)S19.CB, (T0318)L97.CB) [> 4.1883 = 6.9805 < 9.0746] w=0.0867 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)I75.CB) [> 2.4636 = 4.1060 < 5.3377] w=0.0867 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)I75.CB) [> 3.6411 = 6.0684 < 7.8889] w=0.0867 to align # Constraint # added constraint: constraint((T0318)V23.CB, (T0318)V77.CB) [> 3.9079 = 6.5131 < 8.4671] w=0.0867 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)K428.CB) [> 3.3853 = 5.6422 < 7.3349] w=0.0867 to align # Constraint # added constraint: constraint((T0318)A462.CB, (T0318)L475.CB) [> 4.2540 = 7.0899 < 9.2169] w=0.0867 to align # Constraint # added constraint: constraint((T0318)Y102.CB, (T0318)L144.CB) [> 4.0639 = 6.7732 < 8.8052] w=0.0867 to align # Constraint # added constraint: constraint((T0318)N108.CB, (T0318)V146.CB) [> 4.6324 = 7.7206 < 10.0368] w=0.0867 to align # Constraint # added constraint: constraint((T0318)V109.CB, (T0318)V146.CB) [> 3.3328 = 5.5547 < 7.2212] w=0.0867 to align # Constraint # added constraint: constraint((T0318)L113.CB, (T0318)T156.CB) [> 2.8256 = 4.7092 < 6.1220] w=0.0867 to align # Constraint # added constraint: constraint((T0318)R373.CB, (T0318)T469.CB) [> 4.4931 = 7.4885 < 9.7350] w=0.0867 to align # Constraint # added constraint: constraint((T0318)L71.CB, (T0318)L97.CB) [> 3.7935 = 6.3225 < 8.2193] w=0.0867 to align # Constraint # added constraint: constraint((T0318)H91.CB, (T0318)R129.CB) [> 4.0159 = 6.6932 < 8.7012] w=0.0867 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)T164.CB) [> 3.5462 = 5.9104 < 7.6835] w=0.0867 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)L163.CB) [> 4.3297 = 7.2161 < 9.3809] w=0.0867 to align # Constraint # added constraint: constraint((T0318)A125.CB, (T0318)A474.CB) [> 4.4508 = 7.4180 < 9.6434] w=0.0867 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)V436.CB) [> 4.7356 = 7.8927 < 10.2605] w=0.0856 to align # Constraint # added constraint: constraint((T0318)L17.CB, (T0318)L67.CB) [> 3.8148 = 6.3580 < 8.2654] w=0.0854 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)R64.CB) [> 4.4982 = 7.4970 < 9.7461] w=0.0854 to align # Constraint # added constraint: constraint((T0318)Y102.CB, (T0318)V146.CB) [> 4.1066 = 6.8444 < 8.8977] w=0.0846 to align # Constraint # added constraint: constraint((T0318)H110.CB, (T0318)I148.CB) [> 4.3715 = 7.2858 < 9.4715] w=0.0846 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)A459.CB) [> 4.7247 = 7.8745 < 10.2369] w=0.0846 to align # Constraint # added constraint: constraint((T0318)L163.CB, (T0318)E284.CB) [> 3.9230 = 6.5383 < 8.4997] w=0.0844 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)I445.CB) [> 3.3498 = 5.5830 < 7.2579] w=0.0844 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)P311.CB) [> 3.5606 = 5.9344 < 7.7147] w=0.0844 to align # Constraint # added constraint: constraint((T0318)V464.CB, (T0318)F476.CB) [> 3.0345 = 5.0574 < 6.5747] w=0.0832 to align # Constraint # added constraint: constraint((T0318)A462.CB, (T0318)F476.CB) [> 3.8057 = 6.3429 < 8.2457] w=0.0832 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)E329.CB) [> 2.9158 = 4.8597 < 6.3176] w=0.0829 to align # Constraint # added constraint: constraint((T0318)L113.CB, (T0318)D149.CB) [> 3.7964 = 6.3274 < 8.2256] w=0.0825 to align # Constraint # added constraint: constraint((T0318)G376.CA, (T0318)A459.CB) [> 4.5805 = 7.6342 < 9.9244] w=0.0823 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)D359.CB) [> 4.1276 = 6.8793 < 8.9431] w=0.0821 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)D359.CB) [> 4.3131 = 7.1885 < 9.3450] w=0.0821 to align # Constraint # added constraint: constraint((T0318)K37.CB, (T0318)H65.CB) [> 4.3233 = 7.2055 < 9.3671] w=0.0814 to align # Constraint # added constraint: constraint((T0318)F134.CB, (T0318)N145.CB) [> 3.8098 = 6.3496 < 8.2545] w=0.0807 to align # Constraint # added constraint: constraint((T0318)N147.CB, (T0318)K203.CB) [> 3.6779 = 6.1299 < 7.9688] w=0.0806 to align # Constraint # added constraint: constraint((T0318)P180.CB, (T0318)Y256.CB) [> 3.2955 = 5.4925 < 7.1402] w=0.0800 to align # Constraint # added constraint: constraint((T0318)E463.CB, (T0318)G472.CA) [> 4.3477 = 7.2461 < 9.4199] w=0.0795 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)I418.CB) [> 4.1487 = 6.9145 < 8.9889] w=0.0792 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)H292.CB) [> 3.7052 = 6.1754 < 8.0280] w=0.0791 to align # Constraint # added constraint: constraint((T0318)F410.CB, (T0318)L479.CB) [> 4.6848 = 7.8080 < 10.1504] w=0.0791 to align # Constraint # added constraint: constraint((T0318)A392.CB, (T0318)F410.CB) [> 3.3367 = 5.5612 < 7.2296] w=0.0791 to align # Constraint # added constraint: constraint((T0318)K315.CB, (T0318)V328.CB) [> 4.2455 = 7.0759 < 9.1986] w=0.0789 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)G325.CA) [> 3.7496 = 6.2493 < 8.1241] w=0.0787 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)H375.CB) [> 3.6831 = 6.1385 < 7.9801] w=0.0783 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)L374.CB) [> 2.3289 = 3.8814 < 5.0459] w=0.0783 to align # Constraint # added constraint: constraint((T0318)A128.CB, (T0318)V170.CB) [> 3.7724 = 6.2874 < 8.1736] w=0.0780 to align # Constraint # added constraint: constraint((T0318)K266.CB, (T0318)G465.CA) [> 4.5637 = 7.6062 < 9.8881] w=0.0777 to align # Constraint # added constraint: constraint((T0318)Q262.CB, (T0318)S310.CB) [> 4.0779 = 6.7964 < 8.8354] w=0.0770 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)C303.CB) [> 3.9428 = 6.5713 < 8.5427] w=0.0770 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)C301.CB) [> 3.9715 = 6.6191 < 8.6048] w=0.0770 to align # Constraint # added constraint: constraint((T0318)P311.CB, (T0318)P432.CB) [> 4.2141 = 7.0236 < 9.1306] w=0.0759 to align # Constraint # added constraint: constraint((T0318)P311.CB, (T0318)G431.CA) [> 4.4546 = 7.4243 < 9.6516] w=0.0759 to align # Constraint # added constraint: constraint((T0318)P311.CB, (T0318)D430.CB) [> 4.1878 = 6.9797 < 9.0736] w=0.0759 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)T484.CB) [> 2.5914 = 4.3190 < 5.6147] w=0.0759 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)E463.CB) [> 3.9374 = 6.5623 < 8.5310] w=0.0759 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)A460.CB) [> 3.3687 = 5.6144 < 7.2988] w=0.0758 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)A459.CB) [> 3.4542 = 5.7570 < 7.4841] w=0.0758 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)A377.CB) [> 4.7073 = 7.8455 < 10.1991] w=0.0748 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)C303.CB) [> 3.6244 = 6.0406 < 7.8528] w=0.0747 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A361.CB) [> 3.8574 = 6.4290 < 8.3577] w=0.0736 to align # Constraint # added constraint: constraint((T0318)R64.CB, (T0318)P99.CB) [> 3.3490 = 5.5816 < 7.2561] w=0.0733 to align # Constraint # added constraint: constraint((T0318)T364.CB, (T0318)G468.CA) [> 4.6144 = 7.6907 < 9.9979] w=0.0728 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L339.CB) [> 3.3254 = 5.5424 < 7.2051] w=0.0724 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)D343.CB) [> 3.8154 = 6.3589 < 8.2666] w=0.0724 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)F233.CB) [> 4.3105 = 7.1842 < 9.3395] w=0.0724 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)V235.CB) [> 4.2822 = 7.1371 < 9.2782] w=0.0724 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)V234.CB) [> 4.3681 = 7.2801 < 9.4642] w=0.0724 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)F233.CB) [> 2.6013 = 4.3354 < 5.6361] w=0.0724 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)H238.CB) [> 3.3771 = 5.6284 < 7.3170] w=0.0724 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)E383.CB) [> 4.7518 = 7.9196 < 10.2955] w=0.0724 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)D382.CB) [> 2.2614 = 3.7689 < 4.8996] w=0.0724 to align # Constraint # added constraint: constraint((T0318)G365.CA, (T0318)A377.CB) [> 4.6305 = 7.7175 < 10.0327] w=0.0724 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)A366.CB) [> 3.0150 = 5.0250 < 6.5325] w=0.0724 to align # Constraint # added constraint: constraint((T0318)I340.CB, (T0318)L363.CB) [> 4.4836 = 7.4727 < 9.7146] w=0.0724 to align # Constraint # added constraint: constraint((T0318)L339.CB, (T0318)L363.CB) [> 4.4483 = 7.4139 < 9.6381] w=0.0724 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)L339.CB) [> 4.0308 = 6.7181 < 8.7335] w=0.0724 to align # Constraint # added constraint: constraint((T0318)T265.CB, (T0318)D275.CB) [> 3.8009 = 6.3348 < 8.2352] w=0.0724 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)T258.CB) [> 4.0992 = 6.8320 < 8.8816] w=0.0707 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)E329.CB) [> 2.7612 = 4.6020 < 5.9826] w=0.0706 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)V328.CB) [> 4.3694 = 7.2824 < 9.4671] w=0.0706 to align # Constraint # added constraint: constraint((T0318)N381.CB, (T0318)S434.CB) [> 4.5822 = 7.6370 < 9.9281] w=0.0705 to align # Constraint # added constraint: constraint((T0318)V206.CB, (T0318)G218.CA) [> 3.7943 = 6.3239 < 8.2210] w=0.0676 to align # Constraint # added constraint: constraint((T0318)F134.CB, (T0318)V146.CB) [> 3.5036 = 5.8394 < 7.5912] w=0.0673 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)N307.CB) [> 4.1340 = 6.8899 < 8.9569] w=0.0670 to align # Constraint # added constraint: constraint((T0318)T205.CB, (T0318)I220.CB) [> 3.4836 = 5.8061 < 7.5479] w=0.0654 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)E329.CB) [> 3.7900 = 6.3166 < 8.2116] w=0.0651 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)A90.CB) [> 4.6415 = 7.7358 < 10.0566] w=0.0651 to align # Constraint # added constraint: constraint((T0318)T364.CB, (T0318)G431.CA) [> 3.2957 = 5.4928 < 7.1406] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S19.CB, (T0318)L113.CB) [> 4.2110 = 7.0183 < 9.1238] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S19.CB, (T0318)F114.CB) [> 2.7373 = 4.5621 < 5.9307] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S51.CB, (T0318)L67.CB) [> 3.2372 = 5.3954 < 7.0140] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S51.CB, (T0318)H68.CB) [> 4.4905 = 7.4842 < 9.7295] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S54.CB, (T0318)H65.CB) [> 4.6619 = 7.7698 < 10.1007] w=0.0651 to align # Constraint # added constraint: constraint((T0318)S54.CB, (T0318)P66.CB) [> 4.0354 = 6.7256 < 8.7433] w=0.0651 to align # Constraint # added constraint: constraint((T0318)K37.CB, (T0318)I56.CB) [> 4.3493 = 7.2489 < 9.4235] w=0.0651 to align # Constraint # added constraint: constraint((T0318)F38.CB, (T0318)S54.CB) [> 4.5410 = 7.5683 < 9.8388] w=0.0651 to align # Constraint # added constraint: constraint((T0318)V41.CB, (T0318)S51.CB) [> 3.5566 = 5.9277 < 7.7060] w=0.0651 to align # Constraint # added constraint: constraint((T0318)V41.CB, (T0318)N53.CB) [> 4.5033 = 7.5055 < 9.7572] w=0.0651 to align # Constraint # added constraint: constraint((T0318)F45.CB, (T0318)R64.CB) [> 4.3313 = 7.2188 < 9.3845] w=0.0651 to align # Constraint # added constraint: constraint((T0318)L212.CB, (T0318)D343.CB) [> 4.6028 = 7.6714 < 9.9728] w=0.0651 to align # Constraint # added constraint: constraint((T0318)I220.CB, (T0318)L323.CB) [> 4.6406 = 7.7343 < 10.0546] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)A313.CB) [> 4.7297 = 7.8829 < 10.2477] w=0.0651 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)V305.CB) [> 4.7911 = 7.9851 < 10.3807] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)E463.CB) [> 4.7609 = 7.9348 < 10.3153] w=0.0651 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)L67.CB) [> 4.4658 = 7.4429 < 9.6758] w=0.0651 to align # Constraint # added constraint: constraint((T0318)V13.CB, (T0318)H68.CB) [> 3.4222 = 5.7036 < 7.4147] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G14.CA, (T0318)H68.CB) [> 3.5247 = 5.8745 < 7.6368] w=0.0651 to align # Constraint # added constraint: constraint((T0318)K98.CB, (T0318)N147.CB) [> 3.1274 = 5.2123 < 6.7761] w=0.0651 to align # Constraint # added constraint: constraint((T0318)P103.CB, (T0318)V150.CB) [> 4.6433 = 7.7389 < 10.0606] w=0.0651 to align # Constraint # added constraint: constraint((T0318)D105.CB, (T0318)V151.CB) [> 3.5243 = 5.8738 < 7.6359] w=0.0651 to align # Constraint # added constraint: constraint((T0318)C132.CB, (T0318)A174.CB) [> 3.8672 = 6.4454 < 8.3790] w=0.0651 to align # Constraint # added constraint: constraint((T0318)I320.CB, (T0318)A419.CB) [> 4.7775 = 7.9626 < 10.3513] w=0.0651 to align # Constraint # added constraint: constraint((T0318)L374.CB, (T0318)P461.CB) [> 4.4340 = 7.3899 < 9.6069] w=0.0651 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)P66.CB) [> 4.1416 = 6.9027 < 8.9734] w=0.0651 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)L67.CB) [> 3.9421 = 6.5702 < 8.5412] w=0.0651 to align # Constraint # added constraint: constraint((T0318)P228.CB, (T0318)S310.CB) [> 4.7294 = 7.8824 < 10.2471] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)D359.CB) [> 4.7257 = 7.8761 < 10.2390] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)L456.CB) [> 4.7422 = 7.9036 < 10.2747] w=0.0651 to align # Constraint # added constraint: constraint((T0318)H123.CB, (T0318)V151.CB) [> 4.7572 = 7.9287 < 10.3073] w=0.0651 to align # Constraint # added constraint: constraint((T0318)V124.CB, (T0318)F162.CB) [> 4.4542 = 7.4237 < 9.6508] w=0.0651 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)I458.CB) [> 4.6639 = 7.7732 < 10.1051] w=0.0651 to align # Constraint # added constraint: constraint((T0318)M322.CB, (T0318)L339.CB) [> 4.7920 = 7.9866 < 10.3827] w=0.0651 to align # Constraint # added constraint: constraint((T0318)P87.CB, (T0318)T130.CB) [> 4.4795 = 7.4658 < 9.7056] w=0.0651 to align # Constraint # added constraint: constraint((T0318)Y117.CB, (T0318)V151.CB) [> 3.7406 = 6.2343 < 8.1046] w=0.0651 to align # Constraint # added constraint: constraint((T0318)T106.CB, (T0318)L144.CB) [> 3.9167 = 6.5279 < 8.4862] w=0.0651 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)G472.CA) [> 4.3616 = 7.2694 < 9.4502] w=0.0641 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)P231.CB) [> 3.4588 = 5.7647 < 7.4942] w=0.0640 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)I304.CB) [> 3.7423 = 6.2372 < 8.1083] w=0.0640 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)V305.CB) [> 2.6707 = 4.4512 < 5.7865] w=0.0640 to align # Constraint # added constraint: constraint((T0318)D318.CB, (T0318)G431.CA) [> 4.4050 = 7.3416 < 9.5441] w=0.0640 to align # Constraint # added constraint: constraint((T0318)V13.CB, (T0318)L67.CB) [> 3.8046 = 6.3409 < 8.2432] w=0.0637 to align # Constraint # added constraint: constraint((T0318)V13.CB, (T0318)F45.CB) [> 2.8985 = 4.8309 < 6.2801] w=0.0637 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)M421.CB) [> 4.7175 = 7.8625 < 10.2213] w=0.0637 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)S417.CB) [> 4.0035 = 6.6726 < 8.6743] w=0.0637 to align # Constraint # added constraint: constraint((T0318)V345.CB, (T0318)M421.CB) [> 4.4294 = 7.3823 < 9.5970] w=0.0637 to align # Constraint # added constraint: constraint((T0318)F346.CB, (T0318)D420.CB) [> 2.8150 = 4.6917 < 6.0992] w=0.0637 to align # Constraint # added constraint: constraint((T0318)I75.CB, (T0318)T106.CB) [> 3.4593 = 5.7655 < 7.4952] w=0.0630 to align # Constraint # added constraint: constraint((T0318)P103.CB, (T0318)V120.CB) [> 4.1168 = 6.8613 < 8.9197] w=0.0624 to align # Constraint # added constraint: constraint((T0318)H299.CB, (T0318)E329.CB) [> 4.0586 = 6.7643 < 8.7937] w=0.0623 to align # Constraint # added constraint: constraint((T0318)S135.CB, (T0318)L144.CB) [> 4.2917 = 7.1528 < 9.2986] w=0.0616 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)A232.CB) [> 3.6941 = 6.1568 < 8.0038] w=0.0613 to align # Constraint # added constraint: constraint((T0318)I127.CB, (T0318)C301.CB) [> 3.2566 = 5.4277 < 7.0560] w=0.0611 to align # Constraint # added constraint: constraint((T0318)S135.CB, (T0318)S202.CB) [> 3.2717 = 5.4529 < 7.0888] w=0.0611 to align # Constraint # added constraint: constraint((T0318)N147.CB, (T0318)S202.CB) [> 3.2787 = 5.4646 < 7.1039] w=0.0611 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)N332.CB) [> 3.9527 = 6.5878 < 8.5641] w=0.0611 to align # Constraint # added constraint: constraint((T0318)A313.CB, (T0318)M322.CB) [> 3.5742 = 5.9570 < 7.7440] w=0.0611 to align # Constraint # added constraint: constraint((T0318)I319.CB, (T0318)N332.CB) [> 4.6187 = 7.6978 < 10.0072] w=0.0611 to align # Constraint # added constraint: constraint((T0318)I320.CB, (T0318)N331.CB) [> 4.0505 = 6.7509 < 8.7762] w=0.0611 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)P311.CB) [> 2.6806 = 4.4677 < 5.8080] w=0.0611 to align # Constraint # added constraint: constraint((T0318)V150.CB, (T0318)I204.CB) [> 3.2805 = 5.4675 < 7.1077] w=0.0603 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)A460.CB) [> 3.9150 = 6.5249 < 8.4824] w=0.0601 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)P103.CB) [> 4.3979 = 7.3298 < 9.5287] w=0.0597 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)M379.CB) [> 3.2512 = 5.4187 < 7.0444] w=0.0590 to align # Constraint # added constraint: constraint((T0318)M276.CB, (T0318)D343.CB) [> 3.8831 = 6.4718 < 8.4133] w=0.0588 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)H292.CB) [> 2.6619 = 4.4365 < 5.7674] w=0.0588 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)H292.CB) [> 3.4294 = 5.7156 < 7.4303] w=0.0588 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)L298.CB) [> 4.6502 = 7.7503 < 10.0754] w=0.0588 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)D343.CB) [> 3.0223 = 5.0372 < 6.5484] w=0.0588 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)I340.CB) [> 3.0636 = 5.1060 < 6.6378] w=0.0588 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)D343.CB) [> 4.2288 = 7.0479 < 9.1623] w=0.0588 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)I340.CB) [> 4.4565 = 7.4275 < 9.6557] w=0.0588 to align # Constraint # added constraint: constraint((T0318)C132.CB, (T0318)T351.CB) [> 3.0488 = 5.0813 < 6.6057] w=0.0588 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)A248.CB) [> 2.6014 = 4.3358 < 5.6365] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)I247.CB) [> 3.0979 = 5.1632 < 6.7121] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)V254.CB) [> 4.3096 = 7.1826 < 9.3374] w=0.0588 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)I247.CB) [> 3.6542 = 6.0903 < 7.9174] w=0.0588 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)L374.CB) [> 4.2863 = 7.1439 < 9.2871] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)I340.CB) [> 2.9286 = 4.8811 < 6.3454] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)A361.CB) [> 4.5264 = 7.5440 < 9.8072] w=0.0588 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)F358.CB) [> 3.2064 = 5.3439 < 6.9471] w=0.0588 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)G376.CA) [> 4.5728 = 7.6214 < 9.9078] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)H375.CB) [> 3.6800 = 6.1334 < 7.9734] w=0.0588 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)G438.CA) [> 3.8118 = 6.3529 < 8.2588] w=0.0586 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)V436.CB) [> 4.1830 = 6.9717 < 9.0632] w=0.0586 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)L456.CB) [> 4.5294 = 7.5491 < 9.8138] w=0.0586 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)S434.CB) [> 4.2469 = 7.0781 < 9.2015] w=0.0586 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)S434.CB) [> 4.2032 = 7.0053 < 9.1069] w=0.0586 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)S434.CB) [> 2.5344 = 4.2240 < 5.4912] w=0.0586 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)L456.CB) [> 3.7054 = 6.1757 < 8.0285] w=0.0586 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)G431.CA) [> 4.4591 = 7.4319 < 9.6615] w=0.0586 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)S434.CB) [> 2.6544 = 4.4240 < 5.7512] w=0.0586 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A300.CB) [> 2.3104 = 3.8506 < 5.0058] w=0.0586 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)S434.CB) [> 4.2320 = 7.0533 < 9.1692] w=0.0586 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)M282.CB) [> 4.6458 = 7.7430 < 10.0659] w=0.0586 to align # Constraint # added constraint: constraint((T0318)A279.CB, (T0318)A300.CB) [> 4.6699 = 7.7831 < 10.1180] w=0.0586 to align # Constraint # added constraint: constraint((T0318)E239.CB, (T0318)G325.CA) [> 3.5427 = 5.9045 < 7.6758] w=0.0586 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)E284.CB) [> 3.2209 = 5.3681 < 6.9785] w=0.0586 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)N332.CB) [> 3.8396 = 6.3993 < 8.3191] w=0.0586 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A335.CB) [> 3.4920 = 5.8200 < 7.5660] w=0.0586 to align # Constraint # added constraint: constraint((T0318)S371.CB, (T0318)A474.CB) [> 4.0179 = 6.6965 < 8.7055] w=0.0578 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)P231.CB) [> 2.4045 = 4.0075 < 5.2097] w=0.0574 to align # Constraint # added constraint: constraint((T0318)M429.CB, (T0318)P461.CB) [> 3.4966 = 5.8277 < 7.5760] w=0.0572 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)A459.CB) [> 3.3441 = 5.5735 < 7.2456] w=0.0571 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)A459.CB) [> 4.1369 = 6.8949 < 8.9633] w=0.0571 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)A459.CB) [> 4.0144 = 6.6906 < 8.6978] w=0.0571 to align # Constraint # added constraint: constraint((T0318)K133.CB, (T0318)N145.CB) [> 3.8766 = 6.4610 < 8.3994] w=0.0570 to align # Constraint # added constraint: constraint((T0318)D382.CB, (T0318)D430.CB) [> 4.4956 = 7.4927 < 9.7405] w=0.0566 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)C303.CB) [> 4.0314 = 6.7190 < 8.7347] w=0.0566 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)I304.CB) [> 4.2349 = 7.0581 < 9.1756] w=0.0566 to align # Constraint # added constraint: constraint((T0318)A335.CB, (T0318)S434.CB) [> 4.2552 = 7.0920 < 9.2196] w=0.0561 to align # Constraint # added constraint: constraint((T0318)I93.CB, (T0318)Y117.CB) [> 3.4148 = 5.6914 < 7.3988] w=0.0558 to align # Constraint # added constraint: constraint((T0318)V290.CB, (T0318)K326.CB) [> 3.8319 = 6.3864 < 8.3024] w=0.0558 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)E329.CB) [> 4.2085 = 7.0141 < 9.1183] w=0.0558 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)E329.CB) [> 2.9061 = 4.8434 < 6.2965] w=0.0558 to align # Constraint # added constraint: constraint((T0318)S310.CB, (T0318)V328.CB) [> 4.0531 = 6.7552 < 8.7817] w=0.0558 to align # Constraint # added constraint: constraint((T0318)S310.CB, (T0318)I330.CB) [> 3.5239 = 5.8732 < 7.6352] w=0.0558 to align # Constraint # added constraint: constraint((T0318)I312.CB, (T0318)V328.CB) [> 3.2922 = 5.4870 < 7.1330] w=0.0558 to align # Constraint # added constraint: constraint((T0318)L341.CB, (T0318)Q367.CB) [> 4.0498 = 6.7496 < 8.7745] w=0.0546 to align # Constraint # added constraint: constraint((T0318)A368.CB, (T0318)D382.CB) [> 3.4046 = 5.6743 < 7.3766] w=0.0546 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)L71.CB) [> 3.8463 = 6.4106 < 8.3337] w=0.0545 to align # Constraint # added constraint: constraint((T0318)A280.CB, (T0318)L363.CB) [> 4.7963 = 7.9939 < 10.3920] w=0.0544 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)G325.CA) [> 4.2600 = 7.1000 < 9.2300] w=0.0536 to align # Constraint # added constraint: constraint((T0318)V151.CB, (T0318)C303.CB) [> 3.5855 = 5.9759 < 7.7686] w=0.0530 to align # Constraint # added constraint: constraint((T0318)P230.CB, (T0318)T258.CB) [> 4.5630 = 7.6050 < 9.8865] w=0.0511 to align # Constraint # added constraint: constraint((T0318)I204.CB, (T0318)F233.CB) [> 4.1749 = 6.9581 < 9.0456] w=0.0511 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)E329.CB) [> 4.0369 = 6.7282 < 8.7466] w=0.0511 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)V290.CB) [> 3.7226 = 6.2043 < 8.0656] w=0.0511 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)I319.CB) [> 4.1679 = 6.9466 < 9.0305] w=0.0511 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)A279.CB) [> 3.1355 = 5.2259 < 6.7937] w=0.0511 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)N332.CB) [> 3.0761 = 5.1268 < 6.6648] w=0.0511 to align # Constraint # added constraint: constraint((T0318)T258.CB, (T0318)D334.CB) [> 3.4427 = 5.7378 < 7.4591] w=0.0511 to align # Constraint # added constraint: constraint((T0318)L289.CB, (T0318)I319.CB) [> 4.0295 = 6.7158 < 8.7305] w=0.0511 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)D318.CB) [> 4.7772 = 7.9621 < 10.3507] w=0.0511 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)I319.CB) [> 2.2296 = 3.7160 < 4.8309] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)V328.CB) [> 3.6556 = 6.0927 < 7.9205] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)E329.CB) [> 4.4450 = 7.4084 < 9.6309] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)F358.CB) [> 3.1342 = 5.2237 < 6.7908] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)M282.CB) [> 4.5423 = 7.5705 < 9.8416] w=0.0511 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)A279.CB) [> 4.5011 = 7.5018 < 9.7523] w=0.0511 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)D359.CB) [> 4.3651 = 7.2751 < 9.4576] w=0.0511 to align # Constraint # added constraint: constraint((T0318)Y256.CB, (T0318)T333.CB) [> 4.0563 = 6.7606 < 8.7887] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)D359.CB) [> 2.3577 = 3.9294 < 5.1082] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)F358.CB) [> 4.1550 = 6.9250 < 9.0024] w=0.0511 to align # Constraint # added constraint: constraint((T0318)V254.CB, (T0318)A300.CB) [> 4.3145 = 7.1908 < 9.3481] w=0.0489 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)V250.CB) [> 4.0426 = 6.7376 < 8.7589] w=0.0489 to align # Constraint # added constraint: constraint((T0318)I304.CB, (T0318)D359.CB) [> 4.1776 = 6.9627 < 9.0516] w=0.0489 to align # Constraint # added constraint: constraint((T0318)I304.CB, (T0318)M360.CB) [> 3.9510 = 6.5850 < 8.5605] w=0.0489 to align # Constraint # added constraint: constraint((T0318)N307.CB, (T0318)D359.CB) [> 1.5597 = 2.5996 < 3.3795] w=0.0489 to align # Constraint # added constraint: constraint((T0318)N307.CB, (T0318)M360.CB) [> 3.9332 = 6.5553 < 8.5219] w=0.0489 to align # Constraint # added constraint: constraint((T0318)K266.CB, (T0318)G281.CA) [> 4.5877 = 7.6461 < 9.9399] w=0.0489 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)D457.CB) [> 4.0803 = 6.8005 < 8.8406] w=0.0471 to align # Constraint # added constraint: constraint((T0318)I93.CB, (T0318)T130.CB) [> 4.1644 = 6.9406 < 9.0228] w=0.0463 to align # Constraint # added constraint: constraint((T0318)Q43.CB, (T0318)H68.CB) [> 3.6638 = 6.1063 < 7.9383] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q43.CB, (T0318)P66.CB) [> 3.5031 = 5.8386 < 7.5901] w=0.0434 to align # Constraint # added constraint: constraint((T0318)L29.CB, (T0318)I59.CB) [> 3.5264 = 5.8773 < 7.6405] w=0.0434 to align # Constraint # added constraint: constraint((T0318)L97.CB, (T0318)N147.CB) [> 4.6488 = 7.7480 < 10.0724] w=0.0434 to align # Constraint # added constraint: constraint((T0318)L67.CB, (T0318)P103.CB) [> 4.1762 = 6.9603 < 9.0484] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R83.CB, (T0318)P103.CB) [> 3.8935 = 6.4892 < 8.4360] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R7.CB, (T0318)K98.CB) [> 3.0556 = 5.0927 < 6.6205] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)S62.CB) [> 4.1050 = 6.8417 < 8.8942] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)G63.CA) [> 2.7088 = 4.5146 < 5.8690] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)R64.CB) [> 4.1359 = 6.8931 < 8.9611] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)H65.CB) [> 3.2368 = 5.3947 < 7.0131] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)H91.CB) [> 3.9654 = 6.6089 < 8.5916] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)Y94.CB) [> 3.9195 = 6.5325 < 8.4922] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)P99.CB) [> 2.9999 = 4.9998 < 6.4997] w=0.0434 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)I100.CB) [> 4.7869 = 7.9781 < 10.3715] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)G63.CA) [> 3.8632 = 6.4387 < 8.3703] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)R64.CB) [> 3.4880 = 5.8133 < 7.5573] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)H65.CB) [> 3.7130 = 6.1884 < 8.0449] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)P99.CB) [> 3.5630 = 5.9383 < 7.7198] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)I100.CB) [> 3.1647 = 5.2745 < 6.8569] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V4.CB, (T0318)P60.CB) [> 3.5075 = 5.8459 < 7.5997] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V4.CB, (T0318)A61.CB) [> 3.0003 = 5.0006 < 6.5007] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V4.CB, (T0318)I100.CB) [> 3.1085 = 5.1808 < 6.7350] w=0.0434 to align # Constraint # added constraint: constraint((T0318)L5.CB, (T0318)A61.CB) [> 4.0172 = 6.6953 < 8.7039] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)P60.CB) [> 4.7319 = 7.8865 < 10.2525] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)A61.CB) [> 2.5954 = 4.3257 < 5.6235] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)S62.CB) [> 4.4697 = 7.4495 < 9.6844] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)G63.CA) [> 4.5553 = 7.5922 < 9.8698] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)E96.CB) [> 4.6460 = 7.7433 < 10.0663] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)K98.CB) [> 3.8365 = 6.3942 < 8.3124] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)P99.CB) [> 3.6318 = 6.0530 < 7.8689] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)I100.CB) [> 2.8640 = 4.7733 < 6.2053] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V6.CB, (T0318)D149.CB) [> 4.6295 = 7.7159 < 10.0307] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R7.CB, (T0318)A61.CB) [> 4.3142 = 7.1904 < 9.3475] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R7.CB, (T0318)S62.CB) [> 3.4397 = 5.7328 < 7.4527] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R7.CB, (T0318)Y94.CB) [> 4.7769 = 7.9616 < 10.3501] w=0.0434 to align # Constraint # added constraint: constraint((T0318)A12.CB, (T0318)L67.CB) [> 3.7300 = 6.2167 < 8.0817] w=0.0434 to align # Constraint # added constraint: constraint((T0318)A12.CB, (T0318)Y102.CB) [> 4.1990 = 6.9983 < 9.0977] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V13.CB, (T0318)Q43.CB) [> 3.5680 = 5.9467 < 7.7306] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V13.CB, (T0318)P66.CB) [> 3.1547 = 5.2579 < 6.8352] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G14.CA, (T0318)Y69.CB) [> 2.9498 = 4.9164 < 6.3913] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)N101.CB) [> 4.2465 = 7.0775 < 9.2008] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)Y102.CB) [> 4.2513 = 7.0855 < 9.2112] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)R64.CB) [> 4.4982 = 7.4970 < 9.7461] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)H65.CB) [> 2.5799 = 4.2999 < 5.5899] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)P87.CB) [> 3.5404 = 5.9007 < 7.6708] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)P99.CB) [> 3.8050 = 6.3417 < 8.2443] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)I100.CB) [> 4.5760 = 7.6266 < 9.9146] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)N101.CB) [> 3.0631 = 5.1051 < 6.6367] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)Y102.CB) [> 3.7979 = 6.3299 < 8.2289] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)I22.CB) [> 3.5047 = 5.8411 < 7.5935] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)V23.CB) [> 2.3929 = 3.9882 < 5.1846] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)K26.CB) [> 3.8811 = 6.4684 < 8.4090] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)R64.CB) [> 4.1004 = 6.8340 < 8.8842] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Q11.CB, (T0318)P66.CB) [> 3.4687 = 5.7811 < 7.5155] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V109.CB, (T0318)D149.CB) [> 3.0884 = 5.1473 < 6.6915] w=0.0434 to align # Constraint # added constraint: constraint((T0318)C132.CB, (T0318)V464.CB) [> 4.4989 = 7.4982 < 9.7477] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)G427.CA) [> 4.4981 = 7.4968 < 9.7458] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V109.CB, (T0318)V150.CB) [> 4.4152 = 7.3586 < 9.5662] w=0.0434 to align # Constraint # added constraint: constraint((T0318)R129.CB, (T0318)Y471.CB) [> 4.4422 = 7.4037 < 9.6248] w=0.0434 to align # Constraint # added constraint: constraint((T0318)I10.CB, (T0318)L20.CB) [> 4.0265 = 6.7108 < 8.7241] w=0.0434 to align # Constraint # added constraint: constraint((T0318)A366.CB, (T0318)K428.CB) [> 4.4989 = 7.4982 < 9.7477] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V32.CB, (T0318)W52.CB) [> 3.2287 = 5.3812 < 6.9956] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Y117.CB, (T0318)V150.CB) [> 3.1955 = 5.3258 < 6.9235] w=0.0434 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)Y471.CB) [> 4.7745 = 7.9576 < 10.3448] w=0.0434 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)S81.CB) [> 3.3155 = 5.5258 < 7.1835] w=0.0434 to align # Constraint # added constraint: constraint((T0318)V32.CB, (T0318)N53.CB) [> 4.5437 = 7.5729 < 9.8448] w=0.0434 to align # Constraint # added constraint: constraint((T0318)M55.CB, (T0318)V77.CB) [> 4.7682 = 7.9470 < 10.3312] w=0.0434 to align # Constraint # added constraint: constraint((T0318)W52.CB, (T0318)L67.CB) [> 4.6628 = 7.7713 < 10.1027] w=0.0434 to align # Constraint # added constraint: constraint((T0318)A406.CB, (T0318)A459.CB) [> 4.4139 = 7.3566 < 9.5636] w=0.0432 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)S416.CB) [> 2.6166 = 4.3611 < 5.6694] w=0.0432 to align # Constraint # added constraint: constraint((T0318)Y221.CB, (T0318)V328.CB) [> 3.2243 = 5.3738 < 6.9859] w=0.0423 to align # Constraint # added constraint: constraint((T0318)V46.CB, (T0318)P66.CB) [> 3.8826 = 6.4709 < 8.4122] w=0.0420 to align # Constraint # added constraint: constraint((T0318)C152.CB, (T0318)V250.CB) [> 4.3918 = 7.3197 < 9.5156] w=0.0407 to align # Constraint # added constraint: constraint((T0318)T130.CB, (T0318)I319.CB) [> 4.0963 = 6.8271 < 8.8752] w=0.0407 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)P311.CB) [> 2.9543 = 4.9239 < 6.4011] w=0.0407 to align # Constraint # added constraint: constraint((T0318)K273.CB, (T0318)A300.CB) [> 4.1954 = 6.9923 < 9.0900] w=0.0407 to align # Constraint # added constraint: constraint((T0318)T297.CB, (T0318)G325.CA) [> 3.8538 = 6.4230 < 8.3499] w=0.0407 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)I304.CB) [> 3.5583 = 5.9305 < 7.7097] w=0.0407 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)K273.CB) [> 3.9567 = 6.5946 < 8.5730] w=0.0407 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)P311.CB) [> 4.7864 = 7.9773 < 10.3705] w=0.0407 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)K273.CB) [> 3.9209 = 6.5349 < 8.4953] w=0.0407 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)L249.CB) [> 4.2979 = 7.1632 < 9.3121] w=0.0407 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)D457.CB) [> 4.7516 = 7.9194 < 10.2952] w=0.0406 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)D430.CB) [> 4.3660 = 7.2766 < 9.4597] w=0.0403 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)E329.CB) [> 3.0373 = 5.0622 < 6.5808] w=0.0402 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)V328.CB) [> 3.9216 = 6.5360 < 8.4968] w=0.0402 to align # Constraint # added constraint: constraint((T0318)F134.CB, (T0318)I148.CB) [> 3.5579 = 5.9299 < 7.7088] w=0.0399 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)L249.CB) [> 4.1223 = 6.8705 < 8.9317] w=0.0392 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)L249.CB) [> 4.2967 = 7.1612 < 9.3095] w=0.0392 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)L352.CB) [> 4.5792 = 7.6321 < 9.9217] w=0.0392 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)G278.CA) [> 4.5595 = 7.5992 < 9.8790] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)L456.CB) [> 2.9643 = 4.9405 < 6.4226] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)I458.CB) [> 4.7177 = 7.8628 < 10.2216] w=0.0391 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)L456.CB) [> 4.0712 = 6.7853 < 8.8209] w=0.0391 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)I458.CB) [> 3.3366 = 5.5611 < 7.2294] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)A181.CB) [> 3.6195 = 6.0325 < 7.8423] w=0.0391 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)I458.CB) [> 4.4279 = 7.3798 < 9.5937] w=0.0391 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)G281.CA) [> 4.6614 = 7.7690 < 10.0998] w=0.0391 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)L456.CB) [> 4.1947 = 6.9912 < 9.0886] w=0.0391 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)I458.CB) [> 3.8145 = 6.3574 < 8.2647] w=0.0391 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)S434.CB) [> 3.7251 = 6.2085 < 8.0711] w=0.0391 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)M360.CB) [> 3.7633 = 6.2721 < 8.1537] w=0.0391 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)K252.CB) [> 4.6907 = 7.8178 < 10.1632] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)K252.CB) [> 4.7107 = 7.8512 < 10.2066] w=0.0391 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)V254.CB) [> 3.1412 = 5.2354 < 6.8060] w=0.0391 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)G253.CA) [> 2.5568 = 4.2613 < 5.5397] w=0.0391 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)K252.CB) [> 3.1024 = 5.1706 < 6.7218] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)E329.CB) [> 4.7535 = 7.9225 < 10.2992] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A279.CB) [> 3.0989 = 5.1648 < 6.7142] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)G278.CA) [> 2.8354 = 4.7257 < 6.1434] w=0.0391 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)G277.CA) [> 4.7984 = 7.9974 < 10.3966] w=0.0391 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)M360.CB) [> 4.1069 = 6.8447 < 8.8982] w=0.0391 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)M282.CB) [> 3.1752 = 5.2920 < 6.8796] w=0.0391 to align # Constraint # added constraint: constraint((T0318)D382.CB, (T0318)M429.CB) [> 4.1703 = 6.9505 < 9.0357] w=0.0384 to align # Constraint # added constraint: constraint((T0318)I56.CB, (T0318)H65.CB) [> 4.6938 = 7.8230 < 10.1699] w=0.0382 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)Y69.CB) [> 4.0141 = 6.6902 < 8.6973] w=0.0382 to align # Constraint # added constraint: constraint((T0318)G224.CA, (T0318)E329.CB) [> 4.6842 = 7.8070 < 10.1491] w=0.0380 to align # Constraint # added constraint: constraint((T0318)V223.CB, (T0318)N331.CB) [> 3.7290 = 6.2150 < 8.0795] w=0.0380 to align # Constraint # added constraint: constraint((T0318)H222.CB, (T0318)N331.CB) [> 4.6913 = 7.8189 < 10.1646] w=0.0380 to align # Constraint # added constraint: constraint((T0318)Y221.CB, (T0318)I330.CB) [> 4.2720 = 7.1201 < 9.2561] w=0.0380 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)L363.CB) [> 3.7808 = 6.3014 < 8.1918] w=0.0380 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)Q367.CB) [> 4.4226 = 7.3710 < 9.5823] w=0.0380 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A368.CB) [> 2.1784 = 3.6306 < 4.7198] w=0.0380 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)L363.CB) [> 4.3113 = 7.1854 < 9.3411] w=0.0380 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)Q367.CB) [> 4.0557 = 6.7595 < 8.7873] w=0.0380 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)A377.CB) [> 3.4917 = 5.8195 < 7.5654] w=0.0380 to align # Constraint # added constraint: constraint((T0318)W369.CB, (T0318)L385.CB) [> 3.8794 = 6.4657 < 8.4054] w=0.0380 to align # Constraint # added constraint: constraint((T0318)P402.CB, (T0318)S416.CB) [> 4.4293 = 7.3821 < 9.5967] w=0.0380 to align # Constraint # added constraint: constraint((T0318)L404.CB, (T0318)L414.CB) [> 4.7259 = 7.8766 < 10.2395] w=0.0380 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A368.CB) [> 3.6243 = 6.0405 < 7.8526] w=0.0380 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A366.CB) [> 4.7222 = 7.8703 < 10.2314] w=0.0380 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A368.CB) [> 4.2747 = 7.1246 < 9.2619] w=0.0380 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)A279.CB) [> 4.7626 = 7.9376 < 10.3189] w=0.0380 to align # Constraint # added constraint: constraint((T0318)R274.CB, (T0318)A366.CB) [> 3.5825 = 5.9708 < 7.7620] w=0.0380 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)E329.CB) [> 4.6953 = 7.8255 < 10.1732] w=0.0380 to align # Constraint # added constraint: constraint((T0318)C301.CB, (T0318)V328.CB) [> 4.7971 = 7.9952 < 10.3938] w=0.0380 to align # Constraint # added constraint: constraint((T0318)E284.CB, (T0318)L363.CB) [> 4.7909 = 7.9848 < 10.3803] w=0.0380 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)L363.CB) [> 2.8152 = 4.6919 < 6.0995] w=0.0380 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)A342.CB) [> 3.5486 = 5.9144 < 7.6887] w=0.0368 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)C301.CB) [> 4.7984 = 7.9973 < 10.3965] w=0.0362 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)N307.CB) [> 4.7629 = 7.9382 < 10.3197] w=0.0362 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)E306.CB) [> 2.5685 = 4.2809 < 5.5652] w=0.0362 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)N307.CB) [> 3.6575 = 6.0959 < 7.9246] w=0.0362 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)T469.CB) [> 3.8389 = 6.3981 < 8.3175] w=0.0362 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)I304.CB) [> 4.3499 = 7.2498 < 9.4247] w=0.0362 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)V305.CB) [> 4.2943 = 7.1571 < 9.3042] w=0.0362 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)A361.CB) [> 2.8695 = 4.7824 < 6.2172] w=0.0356 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)A361.CB) [> 2.9427 = 4.9046 < 6.3759] w=0.0356 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)A361.CB) [> 3.9928 = 6.6547 < 8.6512] w=0.0356 to align # Constraint # added constraint: constraint((T0318)W369.CB, (T0318)N381.CB) [> 4.4409 = 7.4015 < 9.6219] w=0.0356 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)A377.CB) [> 3.3210 = 5.5349 < 7.1954] w=0.0356 to align # Constraint # added constraint: constraint((T0318)Y69.CB, (T0318)A80.CB) [> 4.0483 = 6.7472 < 8.7714] w=0.0326 to align # Constraint # added constraint: constraint((T0318)Q43.CB, (T0318)N53.CB) [> 3.3806 = 5.6344 < 7.3247] w=0.0326 to align # Constraint # added constraint: constraint((T0318)H68.CB, (T0318)P87.CB) [> 4.6248 = 7.7080 < 10.0204] w=0.0326 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)A248.CB) [> 3.4949 = 5.8249 < 7.5724] w=0.0326 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)H299.CB) [> 3.6156 = 6.0260 < 7.8338] w=0.0326 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)G251.CA) [> 4.7327 = 7.8879 < 10.2542] w=0.0326 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)K252.CB) [> 4.7167 = 7.8612 < 10.2196] w=0.0326 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)C303.CB) [> 4.0958 = 6.8263 < 8.8742] w=0.0326 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)D457.CB) [> 4.2609 = 7.1014 < 9.2319] w=0.0281 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)I458.CB) [> 3.4162 = 5.6937 < 7.4018] w=0.0281 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)H299.CB) [> 4.5253 = 7.5422 < 9.8049] w=0.0269 to align # Constraint # added constraint: constraint((T0318)A401.CB, (T0318)A459.CB) [> 3.3590 = 5.5984 < 7.2779] w=0.0261 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)S434.CB) [> 3.9750 = 6.6250 < 8.6125] w=0.0261 to align # Constraint # added constraint: constraint((T0318)N101.CB, (T0318)Y117.CB) [> 3.4814 = 5.8023 < 7.5430] w=0.0256 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)V328.CB) [> 4.3664 = 7.2773 < 9.4605] w=0.0243 to align # Constraint # added constraint: constraint((T0318)V255.CB, (T0318)T297.CB) [> 3.4655 = 5.7758 < 7.5085] w=0.0233 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)T297.CB) [> 3.1161 = 5.1934 < 6.7515] w=0.0233 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)L298.CB) [> 3.8811 = 6.4685 < 8.4091] w=0.0233 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)H299.CB) [> 4.3174 = 7.1957 < 9.3544] w=0.0233 to align # Constraint # added constraint: constraint((T0318)D257.CB, (T0318)F358.CB) [> 4.1303 = 6.8839 < 8.9491] w=0.0233 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)L298.CB) [> 4.4568 = 7.4281 < 9.6565] w=0.0233 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)H299.CB) [> 2.4685 = 4.1142 < 5.3484] w=0.0233 to align # Constraint # added constraint: constraint((T0318)G259.CA, (T0318)F358.CB) [> 4.3939 = 7.3231 < 9.5201] w=0.0233 to align # Constraint # added constraint: constraint((T0318)Y221.CB, (T0318)A232.CB) [> 4.2957 = 7.1595 < 9.3074] w=0.0233 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)V255.CB) [> 4.6058 = 7.6763 < 9.9792] w=0.0233 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)V255.CB) [> 2.1484 = 3.5807 < 4.6549] w=0.0233 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)D257.CB) [> 3.0965 = 5.1608 < 6.7091] w=0.0233 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)T297.CB) [> 4.1312 = 6.8854 < 8.9509] w=0.0233 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)V255.CB) [> 4.4079 = 7.3466 < 9.5506] w=0.0233 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)D257.CB) [> 4.1183 = 6.8639 < 8.9230] w=0.0233 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)D257.CB) [> 2.6043 = 4.3404 < 5.6426] w=0.0233 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)G259.CA) [> 3.6606 = 6.1011 < 7.9314] w=0.0233 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)M379.CB) [> 4.1361 = 6.8934 < 8.9615] w=0.0233 to align # Constraint # added constraint: constraint((T0318)T265.CB, (T0318)L298.CB) [> 4.0283 = 6.7138 < 8.7280] w=0.0233 to align # Constraint # added constraint: constraint((T0318)A300.CB, (T0318)M360.CB) [> 3.9474 = 6.5791 < 8.5528] w=0.0233 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)F358.CB) [> 3.9075 = 6.5126 < 8.4663] w=0.0233 to align # Constraint # added constraint: constraint((T0318)T297.CB, (T0318)F358.CB) [> 3.5224 = 5.8706 < 7.6318] w=0.0233 to align # Constraint # added constraint: constraint((T0318)I458.CB, (T0318)T469.CB) [> 4.3983 = 7.3305 < 9.5297] w=0.0229 to align # Constraint # added constraint: constraint((T0318)S371.CB, (T0318)T469.CB) [> 3.6204 = 6.0340 < 7.8442] w=0.0229 to align # Constraint # added constraint: constraint((T0318)V4.CB, (T0318)A160.CB) [> 4.2177 = 7.0295 < 9.1384] w=0.0217 to align # Constraint # added constraint: constraint((T0318)L5.CB, (T0318)H110.CB) [> 4.7333 = 7.8889 < 10.2555] w=0.0217 to align # Constraint # added constraint: constraint((T0318)L5.CB, (T0318)V120.CB) [> 3.8469 = 6.4115 < 8.3350] w=0.0217 to align # Constraint # added constraint: constraint((T0318)N8.CB, (T0318)T106.CB) [> 4.5964 = 7.6607 < 9.9589] w=0.0217 to align # Constraint # added constraint: constraint((T0318)G9.CA, (T0318)N108.CB) [> 4.7179 = 7.8632 < 10.2222] w=0.0217 to align # Constraint # added constraint: constraint((T0318)M1.CB, (T0318)V146.CB) [> 4.2537 = 7.0895 < 9.2164] w=0.0217 to align # Constraint # added constraint: constraint((T0318)M1.CB, (T0318)D149.CB) [> 3.3966 = 5.6610 < 7.3593] w=0.0217 to align # Constraint # added constraint: constraint((T0318)T2.CB, (T0318)D149.CB) [> 3.8295 = 6.3824 < 8.2972] w=0.0217 to align # Constraint # added constraint: constraint((T0318)T2.CB, (T0318)V150.CB) [> 2.5973 = 4.3289 < 5.6275] w=0.0217 to align # Constraint # added constraint: constraint((T0318)T2.CB, (T0318)V151.CB) [> 4.1826 = 6.9711 < 9.0624] w=0.0217 to align # Constraint # added constraint: constraint((T0318)Q3.CB, (T0318)I127.CB) [> 4.5768 = 7.6279 < 9.9163] w=0.0217 to align # Constraint # added constraint: constraint((T0318)Q3.CB, (T0318)V150.CB) [> 4.5743 = 7.6238 < 9.9110] w=0.0217 to align # Constraint # added constraint: constraint((T0318)V4.CB, (T0318)V150.CB) [> 4.2642 = 7.1069 < 9.2390] w=0.0217 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)V32.CB) [> 4.0690 = 6.7816 < 8.8161] w=0.0217 to align # Constraint # added constraint: constraint((T0318)L426.CB, (T0318)I445.CB) [> 3.4718 = 5.7864 < 7.5223] w=0.0216 to align # Constraint # added constraint: constraint((T0318)P407.CB, (T0318)G431.CA) [> 3.7204 = 6.2008 < 8.0610] w=0.0216 to align # Constraint # added constraint: constraint((T0318)L409.CB, (T0318)S424.CB) [> 3.2848 = 5.4747 < 7.1171] w=0.0216 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)D430.CB) [> 4.4742 = 7.4569 < 9.6940] w=0.0208 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)D430.CB) [> 3.5266 = 5.8777 < 7.6410] w=0.0208 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)D430.CB) [> 2.9154 = 4.8590 < 6.3167] w=0.0208 to align # Constraint # added constraint: constraint((T0318)A181.CB, (T0318)D343.CB) [> 4.5799 = 7.6332 < 9.9231] w=0.0208 to align # Constraint # added constraint: constraint((T0318)I56.CB, (T0318)P66.CB) [> 4.2495 = 7.0824 < 9.2072] w=0.0204 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)I247.CB) [> 3.9753 = 6.6256 < 8.6132] w=0.0204 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)A300.CB) [> 2.8785 = 4.7976 < 6.2368] w=0.0204 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)I304.CB) [> 4.0274 = 6.7124 < 8.7261] w=0.0204 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)C303.CB) [> 4.0224 = 6.7040 < 8.7153] w=0.0204 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)I304.CB) [> 2.3301 = 3.8836 < 5.0487] w=0.0204 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)E306.CB) [> 4.3671 = 7.2785 < 9.4621] w=0.0204 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)N307.CB) [> 3.2311 = 5.3852 < 7.0008] w=0.0204 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)V234.CB) [> 4.3361 = 7.2268 < 9.3948] w=0.0204 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)L236.CB) [> 2.7041 = 4.5068 < 5.8589] w=0.0204 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)K273.CB) [> 4.0252 = 6.7087 < 8.7213] w=0.0204 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)H299.CB) [> 4.3009 = 7.1681 < 9.3185] w=0.0204 to align # Constraint # added constraint: constraint((T0318)I247.CB, (T0318)L302.CB) [> 4.5998 = 7.6664 < 9.9663] w=0.0204 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)I247.CB) [> 4.1324 = 6.8873 < 8.9535] w=0.0204 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)T297.CB) [> 4.1109 = 6.8516 < 8.9070] w=0.0204 to align # Constraint # added constraint: constraint((T0318)F131.CB, (T0318)I319.CB) [> 4.0626 = 6.7709 < 8.8022] w=0.0204 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)G251.CA) [> 4.5752 = 7.6254 < 9.9130] w=0.0196 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)G251.CA) [> 4.0840 = 6.8067 < 8.8487] w=0.0196 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)D191.CB) [> 4.3017 = 7.1695 < 9.3203] w=0.0196 to align # Constraint # added constraint: constraint((T0318)N53.CB, (T0318)V77.CB) [> 4.5164 = 7.5274 < 9.7856] w=0.0195 to align # Constraint # added constraint: constraint((T0318)P66.CB, (T0318)I445.CB) [> 4.3060 = 7.1767 < 9.3297] w=0.0195 to align # Constraint # added constraint: constraint((T0318)A80.CB, (T0318)L289.CB) [> 3.3007 = 5.5012 < 7.1516] w=0.0195 to align # Constraint # added constraint: constraint((T0318)A80.CB, (T0318)E284.CB) [> 3.6893 = 6.1488 < 7.9935] w=0.0195 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)I445.CB) [> 4.7105 = 7.8508 < 10.2061] w=0.0195 to align # Constraint # added constraint: constraint((T0318)P311.CB, (T0318)P402.CB) [> 3.7280 = 6.2134 < 8.0774] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)A437.CB) [> 4.5853 = 7.6422 < 9.9348] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G412.CA, (T0318)P433.CB) [> 4.7128 = 7.8547 < 10.2111] w=0.0195 to align # Constraint # added constraint: constraint((T0318)K252.CB, (T0318)A378.CB) [> 3.9330 = 6.5550 < 8.5215] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A459.CB) [> 3.3809 = 5.6347 < 7.3252] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)D457.CB) [> 3.8781 = 6.4635 < 8.4026] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G251.CA, (T0318)A378.CB) [> 4.2082 = 7.0136 < 9.1177] w=0.0195 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)A459.CB) [> 4.6585 = 7.7642 < 10.0934] w=0.0195 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)D457.CB) [> 2.8649 = 4.7748 < 6.2072] w=0.0195 to align # Constraint # added constraint: constraint((T0318)V250.CB, (T0318)G281.CA) [> 3.7149 = 6.1914 < 8.0489] w=0.0195 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)D457.CB) [> 4.0085 = 6.6808 < 8.6850] w=0.0195 to align # Constraint # added constraint: constraint((T0318)A248.CB, (T0318)D457.CB) [> 4.4864 = 7.4774 < 9.7205] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)I304.CB) [> 4.2917 = 7.1528 < 9.2986] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)M379.CB) [> 4.7792 = 7.9653 < 10.3549] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A378.CB) [> 2.5981 = 4.3301 < 5.6292] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G253.CA, (T0318)A377.CB) [> 4.3754 = 7.2923 < 9.4800] w=0.0195 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)A280.CB) [> 4.3484 = 7.2473 < 9.4215] w=0.0195 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)D359.CB) [> 3.6620 = 6.1033 < 7.9343] w=0.0195 to align # Constraint # added constraint: constraint((T0318)V305.CB, (T0318)F358.CB) [> 4.5217 = 7.5362 < 9.7971] w=0.0195 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)M379.CB) [> 4.7196 = 7.8660 < 10.2258] w=0.0195 to align # Constraint # added constraint: constraint((T0318)C303.CB, (T0318)A378.CB) [> 3.2842 = 5.4737 < 7.1158] w=0.0195 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)A378.CB) [> 3.7115 = 6.1858 < 8.0415] w=0.0195 to align # Constraint # added constraint: constraint((T0318)L302.CB, (T0318)D343.CB) [> 4.5288 = 7.5480 < 9.8124] w=0.0195 to align # Constraint # added constraint: constraint((T0318)E284.CB, (T0318)D343.CB) [> 4.2299 = 7.0498 < 9.1647] w=0.0195 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)L298.CB) [> 4.6964 = 7.8273 < 10.1755] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)A459.CB) [> 4.5683 = 7.6138 < 9.8979] w=0.0195 to align # Constraint # added constraint: constraint((T0318)G281.CA, (T0318)D457.CB) [> 4.6978 = 7.8296 < 10.1785] w=0.0195 to align # Constraint # added constraint: constraint((T0318)F358.CB, (T0318)D457.CB) [> 4.4144 = 7.3573 < 9.5645] w=0.0190 to align # Constraint # added constraint: constraint((T0318)S434.CB, (T0318)L456.CB) [> 3.5618 = 5.9364 < 7.7173] w=0.0190 to align # Constraint # added constraint: constraint((T0318)M379.CB, (T0318)I458.CB) [> 4.0858 = 6.8097 < 8.8525] w=0.0190 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)V255.CB) [> 4.6266 = 7.7110 < 10.0243] w=0.0183 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)V254.CB) [> 3.5774 = 5.9624 < 7.7511] w=0.0183 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)P231.CB) [> 4.4988 = 7.4981 < 9.7475] w=0.0183 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)P230.CB) [> 4.3712 = 7.2853 < 9.4708] w=0.0183 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)V255.CB) [> 3.5988 = 5.9980 < 7.7974] w=0.0183 to align # Constraint # added constraint: constraint((T0318)N307.CB, (T0318)A361.CB) [> 4.7075 = 7.8458 < 10.1996] w=0.0181 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)C303.CB) [> 4.3537 = 7.2562 < 9.4331] w=0.0181 to align # Constraint # added constraint: constraint((T0318)L249.CB, (T0318)L302.CB) [> 3.9288 = 6.5480 < 8.5124] w=0.0181 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)V305.CB) [> 3.8764 = 6.4607 < 8.3990] w=0.0178 to align # Constraint # added constraint: constraint((T0318)I59.CB, (T0318)N101.CB) [> 3.7313 = 6.2188 < 8.0845] w=0.0178 to align # Constraint # added constraint: constraint((T0318)K25.CB, (T0318)I56.CB) [> 3.7412 = 6.2353 < 8.1058] w=0.0178 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)V328.CB) [> 2.9348 = 4.8913 < 6.3587] w=0.0178 to align # Constraint # added constraint: constraint((T0318)Q43.CB, (T0318)S54.CB) [> 4.7523 = 7.9205 < 10.2966] w=0.0163 to align # Constraint # added constraint: constraint((T0318)I22.CB, (T0318)S54.CB) [> 4.3875 = 7.3126 < 9.5063] w=0.0163 to align # Constraint # added constraint: constraint((T0318)I21.CB, (T0318)I56.CB) [> 3.3833 = 5.6388 < 7.3305] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S19.CB, (T0318)S54.CB) [> 2.9147 = 4.8578 < 6.3151] w=0.0163 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)C301.CB) [> 4.7217 = 7.8694 < 10.2303] w=0.0163 to align # Constraint # added constraint: constraint((T0318)V170.CB, (T0318)A248.CB) [> 4.4938 = 7.4896 < 9.7365] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)M360.CB) [> 4.4067 = 7.3445 < 9.5479] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)F358.CB) [> 3.9366 = 6.5610 < 8.5293] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)C303.CB) [> 4.1999 = 6.9998 < 9.0997] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)L302.CB) [> 4.7046 = 7.8410 < 10.1933] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)C301.CB) [> 2.5580 = 4.2632 < 5.5422] w=0.0163 to align # Constraint # added constraint: constraint((T0318)S169.CB, (T0318)V250.CB) [> 3.8095 = 6.3492 < 8.2539] w=0.0163 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)C303.CB) [> 4.0911 = 6.8185 < 8.8640] w=0.0163 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)K252.CB) [> 4.7293 = 7.8822 < 10.2469] w=0.0163 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)G251.CA) [> 4.7424 = 7.9039 < 10.2751] w=0.0163 to align # Constraint # added constraint: constraint((T0318)L166.CB, (T0318)V250.CB) [> 3.8333 = 6.3888 < 8.3054] w=0.0163 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)G253.CA) [> 3.6510 = 6.0850 < 7.9105] w=0.0156 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)G253.CA) [> 3.9537 = 6.5896 < 8.5665] w=0.0156 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)G253.CA) [> 2.7352 = 4.5587 < 5.9264] w=0.0156 to align # Constraint # added constraint: constraint((T0318)L213.CB, (T0318)H222.CB) [> 3.7949 = 6.3249 < 8.2224] w=0.0156 to align # Constraint # added constraint: constraint((T0318)A361.CB, (T0318)A378.CB) [> 3.9034 = 6.5056 < 8.4573] w=0.0143 to align # Constraint # added constraint: constraint((T0318)D359.CB, (T0318)A378.CB) [> 4.7637 = 7.9395 < 10.3214] w=0.0078 to align # Constraint # added constraint: constraint((T0318)M360.CB, (T0318)A378.CB) [> 4.4134 = 7.3558 < 9.5625] w=0.0078 to align # Constraint # added constraint: constraint((T0318)V150.CB, (T0318)Y221.CB) [> 4.3186 = 7.1976 < 9.3569] w=0.0078 to align # Constraint # added constraint: constraint((T0318)N145.CB, (T0318)Y221.CB) [> 4.1069 = 6.8447 < 8.8982] w=0.0078 to align # Constraint # added constraint: constraint((T0318)N147.CB, (T0318)Y221.CB) [> 4.3108 = 7.1847 < 9.3401] w=0.0078 to align # Constraint # added constraint: constraint((T0318)I148.CB, (T0318)Y221.CB) [> 4.1523 = 6.9205 < 8.9966] w=0.0078 to align # Constraint # added constraint: constraint((T0318)D149.CB, (T0318)Y221.CB) [> 3.1829 = 5.3049 < 6.8963] w=0.0078 to align # Constraint # added constraint: constraint((T0318)P228.CB, (T0318)T297.CB) [> 2.1347 = 3.5579 < 4.6252] w=0.0065 to align # Constraint # added constraint: constraint((T0318)P231.CB, (T0318)T297.CB) [> 4.4372 = 7.3953 < 9.6139] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)H299.CB) [> 2.7491 = 4.5818 < 5.9564] w=0.0065 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)F358.CB) [> 4.5158 = 7.5264 < 9.7843] w=0.0065 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)L298.CB) [> 3.1644 = 5.2740 < 6.8562] w=0.0065 to align # Constraint # added constraint: constraint((T0318)F233.CB, (T0318)T297.CB) [> 4.2832 = 7.1387 < 9.2803] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L298.CB, (T0318)V328.CB) [> 3.9546 = 6.5910 < 8.5683] w=0.0065 to align # Constraint # added constraint: constraint((T0318)M282.CB, (T0318)V328.CB) [> 2.8249 = 4.7082 < 6.1207] w=0.0065 to align # Constraint # added constraint: constraint((T0318)G278.CA, (T0318)D457.CB) [> 4.0019 = 6.6699 < 8.6709] w=0.0065 to align # Constraint # added constraint: constraint((T0318)G277.CA, (T0318)D457.CB) [> 4.7511 = 7.9184 < 10.2940] w=0.0065 to align # Constraint # added constraint: constraint((T0318)H375.CB, (T0318)L456.CB) [> 3.4792 = 5.7986 < 7.5382] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)A460.CB) [> 4.2750 = 7.1249 < 9.2624] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L363.CB, (T0318)A378.CB) [> 4.7113 = 7.8522 < 10.2078] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)M360.CB) [> 4.0418 = 6.7363 < 8.7572] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)D359.CB) [> 3.1527 = 5.2545 < 6.8309] w=0.0065 to align # Constraint # added constraint: constraint((T0318)L236.CB, (T0318)F358.CB) [> 4.3231 = 7.2052 < 9.3668] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)M360.CB) [> 4.0569 = 6.7615 < 8.7899] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)F358.CB) [> 3.2682 = 5.4471 < 7.0812] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)L298.CB) [> 4.0916 = 6.8194 < 8.8652] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V235.CB, (T0318)M282.CB) [> 3.8893 = 6.4822 < 8.4269] w=0.0065 to align # Constraint # added constraint: constraint((T0318)V234.CB, (T0318)F358.CB) [> 4.5657 = 7.6095 < 9.8923] w=0.0065 to align # Constraint # added constraint: constraint((T0318)H238.CB, (T0318)A361.CB) [> 4.5260 = 7.5433 < 9.8063] w=0.0065 to align # Constraint # added constraint: constraint((T0318)Y221.CB, (T0318)E329.CB) [> 3.1078 = 5.1797 < 6.7336] w=0.0043 to align # Constraint # added constraint: constraint((T0318)A378.CB, (T0318)L404.CB) [> 4.3653 = 7.2755 < 9.4581] w=0.0043 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)T297.CB) [> 4.5348 = 7.5580 < 9.8254] w=0.0022 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)H299.CB) [> 4.2143 = 7.0238 < 9.1310] w=0.0022 to align # Constraint # added constraint: constraint((T0318)K225.CB, (T0318)V328.CB) [> 3.5548 = 5.9247 < 7.7021] w=0.0022 to align # Constraint # added constraint: constraint((T0318)L404.CB, (T0318)G427.CA) [> 3.8268 = 6.3780 < 8.2914] w=0.0022 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0318/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0318/decoys/ # ReadConformPDB reading from PDB file chimera.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera2.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 472 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 485 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 413 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 434 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0318)D318.C and (T0318)I319.N only 0.000 apart, marking (T0318)I319.N as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.CA only 0.000 apart, marking (T0318)I319.CA as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.CA only 0.000 apart, marking (T0318)I319.CA as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.CB only 0.000 apart, marking (T0318)I319.CB as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.CB only 0.000 apart, marking (T0318)I319.CB as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.CB only 0.000 apart, marking (T0318)I319.CB as missing WARNING: atoms too close: (T0318)I319.CB and (T0318)I319.CG1 only 0.000 apart, marking (T0318)I319.CG1 as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.CG1 only 0.000 apart, marking (T0318)I319.CG1 as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.CG1 only 0.000 apart, marking (T0318)I319.CG1 as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.CG1 only 0.000 apart, marking (T0318)I319.CG1 as missing WARNING: atoms too close: (T0318)I319.CG1 and (T0318)I319.CG2 only 0.000 apart, marking (T0318)I319.CG2 as missing WARNING: atoms too close: (T0318)I319.CB and (T0318)I319.CG2 only 0.000 apart, marking (T0318)I319.CG2 as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.CG2 only 0.000 apart, marking (T0318)I319.CG2 as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.CG2 only 0.000 apart, marking (T0318)I319.CG2 as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.CG2 only 0.000 apart, marking (T0318)I319.CG2 as missing WARNING: atoms too close: (T0318)I319.CG2 and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)I319.CG1 and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)I319.CB and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.CD1 only 0.000 apart, marking (T0318)I319.CD1 as missing WARNING: atoms too close: (T0318)I319.CD1 and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.CG2 and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.CG1 and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.CB and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.O only 0.000 apart, marking (T0318)I319.O as missing WARNING: atoms too close: (T0318)I319.O and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.CD1 and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.CG2 and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.CG1 and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.CB and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.CA and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)I319.N and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing WARNING: atoms too close: (T0318)D318.C and (T0318)I319.C only 0.000 apart, marking (T0318)I319.C as missing # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 467 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 438 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 472 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 483 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 474 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 480 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 482 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 325 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 387 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 77 < previous residue 491 in servers/POMYSL_TS3.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 77 < previous residue 491 in servers/POMYSL_TS5.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 472 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 472 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 489 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 485 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 486 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 469 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 465 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 90, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 92, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 782, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 784, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1158, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1160, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1162, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1164, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1462, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1464, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1466, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1468, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1538, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1540, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1542, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1544, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 392 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 376 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 399 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 436 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 459 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 466 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0318)T2.CA and (T0318)S19.CA only 0.000 apart, marking (T0318)S19.CA as missing WARNING: atoms too close: (T0318)Q3.N and (T0318)L20.N only 0.000 apart, marking (T0318)L20.N as missing WARNING: atoms too close: (T0318)Q3.CA and (T0318)L20.CA only 0.000 apart, marking (T0318)L20.CA as missing WARNING: atoms too close: (T0318)Q3.CB and (T0318)L20.CB only 0.000 apart, marking (T0318)L20.CB as missing WARNING: atoms too close: (T0318)Q3.O and (T0318)L20.O only 0.000 apart, marking (T0318)L20.O as missing WARNING: atoms too close: (T0318)Q3.C and (T0318)L20.C only 0.000 apart, marking (T0318)L20.C as missing WARNING: atoms too close: (T0318)V4.N and (T0318)I21.N only 0.000 apart, marking (T0318)I21.N as missing WARNING: atoms too close: (T0318)V4.CA and (T0318)I21.CA only 0.000 apart, marking (T0318)I21.CA as missing WARNING: atoms too close: (T0318)V4.CB and (T0318)I21.CB only 0.000 apart, marking (T0318)I21.CB as missing WARNING: atoms too close: (T0318)V4.O and (T0318)I21.O only 0.000 apart, marking (T0318)I21.O as missing WARNING: atoms too close: (T0318)V4.C and (T0318)I21.C only 0.000 apart, marking (T0318)I21.C as missing WARNING: atoms too close: (T0318)L5.N and (T0318)I22.N only 0.000 apart, marking (T0318)I22.N as missing WARNING: atoms too close: (T0318)L5.CA and (T0318)I22.CA only 0.000 apart, marking (T0318)I22.CA as missing WARNING: atoms too close: (T0318)L5.CB and (T0318)I22.CB only 0.000 apart, marking (T0318)I22.CB as missing WARNING: atoms too close: (T0318)L5.O and (T0318)I22.O only 0.000 apart, marking (T0318)I22.O as missing WARNING: atoms too close: (T0318)L5.C and (T0318)I22.C only 0.000 apart, marking (T0318)I22.C as missing WARNING: atoms too close: (T0318)V6.N and (T0318)V23.N only 0.000 apart, marking (T0318)V23.N as missing WARNING: atoms too close: (T0318)V6.CA and (T0318)V23.CA only 0.000 apart, marking (T0318)V23.CA as missing WARNING: atoms too close: (T0318)V6.CB and (T0318)V23.CB only 0.000 apart, marking (T0318)V23.CB as missing WARNING: atoms too close: (T0318)V6.C and (T0318)V23.C only 0.000 apart, marking (T0318)V23.C as missing WARNING: atoms too close: (T0318)R7.CA and (T0318)G24.CA only 0.000 apart, marking (T0318)R7.CA as missing WARNING: atoms too close: (T0318)N8.CA and (T0318)K25.CA only 0.000 apart, marking (T0318)K25.CA as missing # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 490 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 489 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0318)A392.O and (T0318)G393.N only 0.000 apart, marking (T0318)G393.N as missing # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0318)G481.O and (T0318)K482.N only 0.000 apart, marking (T0318)K482.N as missing # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0318)S81.O and (T0318)S82.N only 0.000 apart, marking (T0318)S82.N as missing # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 470 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 379 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 432 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 458 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 152 < previous residue 485 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 164 < previous residue 485 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 424 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0318 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.0157 model score -0.0231 model score -0.0165 model score -0.0565 model score -0.0613 model score -0.0355 model score -0.0407 model score -0.0770 model score -0.0728 model score -0.0737 model score -0.0735 model score -0.0739 model score -0.0418 model score -0.0644 model score -0.0712 model score -0.0489 model score -0.0399 model score -0.0784 model score -0.0809 model score -0.1749 model score -0.1485 model score -0.1508 model score 2.0783 model score 2.3878 model score 2.2591 model score 2.3699 model score 2.1926 model score -0.1654 model score -0.1021 model score -0.1008 model score -0.0970 model score -0.0947 model score -0.1047 model score -0.0781 model score -0.1374 model score -0.0614 model score -0.1539 model score -0.0781 model score 0.1401 model score -0.1162 model score -0.1038 model score 1.5531 model score 1.8052 model score 1.6229 model score 1.2636 model score 1.2721 model score 1.2663 model score 1.2696 model score 1.2661 model score -0.0972 model score -0.0929 model score -0.0458 model score -0.0241 model score -0.0496 model score -0.0781 model score -0.0973 model score -0.1374 model score -0.0756 model score -0.1539 model score -0.1485 model score -0.0754 model score -0.1684 model score -0.1271 model score -0.1435 model score 1.2624 model score 1.2616 model score 1.2617 model score 1.2770 model score 1.2852 model score 1.2624 model score 1.2616 model score 1.2617 model score 1.2773 model score 1.2861 model score 2.4226 model score 2.6537 model score 2.3009 model score 2.6573 model score 2.3418 model score -0.1051 model score -0.1686 model score -0.1300 model score 1.3022 model score 1.3353 model score 1.2617 model score 1.2620 model score 1.2622 model score 1.2771 model score 1.2771 model score -0.0830 model score -0.0489 model score -0.0448 model score -0.0362 model score -0.0756 model score -0.1580 model score -0.0870 model score -0.1394 model score -0.1093 model score -0.1647 model score -0.1102 model score -0.1388 model score -0.1401 model score -0.0482 model score 0.1554 model score 1.3972 model score 1.4101 model score 1.4308 model score -0.0959 model score -0.0391 model score -0.0604 model score -0.0782 model score -0.1066 model score -0.0876 model score -0.0667 model score 2.3050 model score 2.2087 model score -0.0717 model score -0.0738 model score -0.0843 model score -0.0130 model score -0.0344 model score -0.0965 model score 1.3406 model score 1.3038 model score 1.2771 model score 1.3173 model score 0.0478 model score 0.0096 model score 0.1141 model score 0.0231 model score -0.0014 model score -0.0807 model score -0.0736 model score -0.0783 model score -0.0631 model score -0.1056 model score -0.1174 model score -0.1085 model score -0.1097 model score -0.1206 model score -0.1174 model score -0.1115 model score 0.0205 model score 0.1151 model score 0.0405 model score 0.0209 model score 0.1397 model score -0.1259 model score -0.0821 model score -0.1576 model score -0.0955 model score -0.1382 model score -0.1629 model score -0.1393 model score -0.1340 model score -0.1571 model score -0.1579 model score -0.1032 model score -0.1246 model score -0.1214 model score -0.0915 model score 0.2122 model score -0.1348 model score -0.1630 model score -0.1585 model score -0.1278 model score 0.1858 model score -0.0837 model score -0.0582 model score -0.0955 model score -0.0727 model score -0.0821 model score -0.1160 model score -0.0844 model score -0.0721 model score -0.0731 model score 1.2668 model score 1.2668 model score 1.2650 model score 1.2667 model score 1.2779 model score 1.2621 model score 1.2620 model score 1.2624 model score 1.2624 model score 1.2624 model score -0.0413 model score -0.1960 model score -0.1136 model score 0.6255 model score 0.6543 model score -0.1571 model score -0.1393 model score -0.0079 model score 2.5075 model score 2.4676 model score -0.1624 model score -0.1450 model score -0.0031 model score 1.2655 model score 1.2773 model score -0.1559 model score -0.1394 model score -0.0005 model score 2.3925 model score 2.2588 model score 1.2620 model score -0.1232 model score 1.2618 model score -0.0882 model score -0.1573 model score -0.1368 model score -0.0765 model score -0.1772 model score -0.1234 model score -0.1518 model score 1.2618 model score 1.2770 model score 1.2769 model score 1.2771 model score 1.2687 model score 1.2657 model score 1.2656 model score 1.2771 model score 1.2771 model score 0.0112 model score -0.0061 model score -0.0230 model score -0.0106 model score 0.0043 model score 2.6995 model score 2.4951 model score 2.6612 model score 2.4310 model score 2.6730 model score -0.0748 model score -0.0921 model score 1.4521 model score 1.7134 model score 1.8012 model score -0.0824 model score -0.0405 model score -0.1047 model score -0.0743 model score -0.0815 model score -0.1279 model score -0.0965 model score 1.3130 model score 0.9444 model score 2.4245 model score 2.0873 model score -0.0603 model score -0.0385 USE_META, weight: 0.9342 cost: 0.0157 min: -0.1960 max: 2.6995 USE_META, weight: 0.9462 cost: -0.0231 min: -0.1960 max: 2.6995 USE_META, weight: 0.9442 cost: -0.0165 min: -0.1960 max: 2.6995 USE_META, weight: 0.9566 cost: -0.0565 min: -0.1960 max: 2.6995 USE_META, weight: 0.9581 cost: -0.0613 min: -0.1960 max: 2.6995 USE_META, weight: 0.9501 cost: -0.0355 min: -0.1960 max: 2.6995 USE_META, weight: 0.9517 cost: -0.0407 min: -0.1960 max: 2.6995 USE_META, weight: 0.9630 cost: -0.0770 min: -0.1960 max: 2.6995 USE_META, weight: 0.9617 cost: -0.0728 min: -0.1960 max: 2.6995 USE_META, weight: 0.9620 cost: -0.0737 min: -0.1960 max: 2.6995 USE_META, weight: 0.9619 cost: -0.0735 min: -0.1960 max: 2.6995 USE_META, weight: 0.9620 cost: -0.0739 min: -0.1960 max: 2.6995 USE_META, weight: 0.9521 cost: -0.0418 min: -0.1960 max: 2.6995 USE_META, weight: 0.9591 cost: -0.0644 min: -0.1960 max: 2.6995 USE_META, weight: 0.9612 cost: -0.0712 min: -0.1960 max: 2.6995 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2.0873 min: -0.1960 max: 2.6995 USE_META, weight: 0.9578 cost: -0.0603 min: -0.1960 max: 2.6995 USE_META, weight: 0.9510 cost: -0.0385 min: -0.1960 max: 2.6995 USE_EVALUE, weight: 0.9388 eval: 1.2027 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9388 eval: 1.2027 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9388 eval: 1.2027 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7519 eval: 4.8746 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7519 eval: 4.8746 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7519 eval: 4.8746 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7855 eval: 4.2146 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7855 eval: 4.2146 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.7855 eval: 4.2146 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9968 eval: 0.0626 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9968 eval: 0.0626 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9968 eval: 0.0626 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8760 eval: 2.4356 min: 0.0000 max: 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weight: 0.9013 eval: 1.9393 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9013 eval: 1.9393 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9478 eval: 1.0252 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9478 eval: 1.0252 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9478 eval: 1.0252 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8358 eval: 3.2261 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8358 eval: 3.2261 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8358 eval: 3.2261 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9578 eval: 0.8288 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9578 eval: 0.8288 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9578 eval: 0.8288 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9435 eval: 1.1095 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9435 eval: 1.1095 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9435 eval: 1.1095 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9011 eval: 1.9426 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9011 eval: 1.9426 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9011 eval: 1.9426 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9033 eval: 1.9000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9033 eval: 1.9000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9033 eval: 1.9000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8215 eval: 3.5079 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8215 eval: 3.5079 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.8215 eval: 3.5079 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9958 eval: 0.0823 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9958 eval: 0.0823 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 0.9958 eval: 0.0823 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 17.6830 Number of contacts in models: 253 Number of contacts in alignments: 66 NUMB_ALIGNS: 66 Adding 30628 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -885.7692, CN propb: -885.7692 weights: 0.2964 constraints: 2110 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 2110 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 2110 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 28518 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 28518 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 30628 # command: