# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0317/ # command:# Making conformation for sequence T0317 numbered 1 through 163 Created new target T0317 from T0317.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0317/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0317//projects/compbio/experiments/protein-predict/casp7/T0317/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0317//projects/compbio/experiments/protein-predict/casp7/T0317/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0317/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0317/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)V125.CB) [> 3.7407 = 6.2344 < 8.1048] w=1.0000 to align # Constraint # added constraint: constraint((T0317)V93.CB, (T0317)C106.CB) [> 3.6498 = 6.0830 < 7.9078] w=1.0000 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)V93.CB) [> 4.1712 = 6.9519 < 9.0375] w=0.9838 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)V93.CB) [> 2.7673 = 4.6122 < 5.9959] w=0.9838 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)L92.CB) [> 4.2077 = 7.0129 < 9.1167] w=0.9838 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)C91.CB) [> 3.8322 = 6.3870 < 8.3031] w=0.9838 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)L92.CB) [> 2.9167 = 4.8611 < 6.3194] w=0.9838 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)L92.CB) [> 4.2670 = 7.1117 < 9.2452] w=0.9838 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)C91.CB) [> 2.9792 = 4.9652 < 6.4548] w=0.9838 to align # Constraint # added constraint: constraint((T0317)V93.CB, (T0317)S102.CB) [> 2.8272 = 4.7120 < 6.1255] w=0.9838 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)V125.CB) [> 3.5012 = 5.8353 < 7.5859] w=0.9838 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)S102.CB) [> 3.6553 = 6.0922 < 7.9199] w=0.9758 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)A121.CB) [> 3.1203 = 5.2005 < 6.7607] w=0.9758 to align # Constraint # added constraint: constraint((T0317)C106.CB, (T0317)V125.CB) [> 3.7758 = 6.2930 < 8.1810] w=0.9758 to align # Constraint # added constraint: constraint((T0317)V93.CB, (T0317)V105.CB) [> 3.4597 = 5.7662 < 7.4960] w=0.9758 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)R101.CB) [> 2.6430 = 4.4050 < 5.7265] w=0.9677 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)S90.CB) [> 3.3819 = 5.6364 < 7.3274] w=0.9596 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)V105.CB) [> 3.7198 = 6.1996 < 8.0596] w=0.9596 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)F122.CB) [> 3.5823 = 5.9704 < 7.7616] w=0.9515 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)Y94.CB) [> 3.8289 = 6.3815 < 8.2959] w=0.9357 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)Y94.CB) [> 4.2994 = 7.1657 < 9.3154] w=0.9357 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)C95.CB) [> 2.8129 = 4.6882 < 6.0947] w=0.9357 to align # Constraint # added constraint: constraint((T0317)L118.CB, (T0317)L142.CB) [> 3.2869 = 5.4782 < 7.1216] w=0.9354 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)F138.CB) [> 2.9804 = 4.9673 < 6.4575] w=0.9354 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)G89.CA) [> 3.6728 = 6.1214 < 7.9578] w=0.9354 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)V105.CB) [> 3.9956 = 6.6593 < 8.6571] w=0.9354 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)E57.CB) [> 4.0214 = 6.7023 < 8.7130] w=0.9352 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)L92.CB) [> 2.9622 = 4.9370 < 6.4180] w=0.9273 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)V55.CB) [> 3.7194 = 6.1990 < 8.0587] w=0.9271 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)L142.CB) [> 3.2130 = 5.3550 < 6.9615] w=0.9193 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)L142.CB) [> 3.7398 = 6.2330 < 8.1029] w=0.9162 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)K96.CB) [> 3.2370 = 5.3951 < 7.0136] w=0.9115 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)C95.CB) [> 2.9413 = 4.9021 < 6.3728] w=0.9115 to align # Constraint # added constraint: constraint((T0317)L32.CB, (T0317)L92.CB) [> 3.8600 = 6.4334 < 8.3634] w=0.9114 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)C91.CB) [> 4.0752 = 6.7920 < 8.8296] w=0.9111 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)V55.CB) [> 3.7730 = 6.2883 < 8.1748] w=0.9110 to align # Constraint # added constraint: constraint((T0317)C78.CB, (T0317)A108.CB) [> 3.7828 = 6.3047 < 8.1961] w=0.9031 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)L118.CB) [> 4.1139 = 6.8565 < 8.9134] w=0.9031 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)Q141.CB) [> 3.9804 = 6.6340 < 8.6242] w=0.9031 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)C91.CB) [> 4.5473 = 7.5789 < 9.8525] w=0.9031 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)L142.CB) [> 3.7265 = 6.2109 < 8.0742] w=0.9030 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)A132.CB) [> 3.3513 = 5.5855 < 7.2611] w=0.8950 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)Y94.CB) [> 4.4670 = 7.4451 < 9.6786] w=0.8873 to align # Constraint # added constraint: constraint((T0317)F122.CB, (T0317)W139.CB) [> 4.2652 = 7.1086 < 9.2412] w=0.8707 to align # Constraint # added constraint: constraint((T0317)M81.CB, (T0317)C91.CB) [> 3.8761 = 6.4602 < 8.3982] w=0.8691 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)G89.CA) [> 3.7518 = 6.2531 < 8.1290] w=0.8627 to align # Constraint # added constraint: constraint((T0317)A35.CB, (T0317)S90.CB) [> 3.6392 = 6.0654 < 7.8850] w=0.8627 to align # Constraint # added constraint: constraint((T0317)R101.CB, (T0317)F138.CB) [> 4.4724 = 7.4540 < 9.6902] w=0.8546 to align # Constraint # added constraint: constraint((T0317)S100.CB, (T0317)F138.CB) [> 3.3721 = 5.6201 < 7.3061] w=0.8546 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)R129.CB) [> 3.8325 = 6.3875 < 8.3037] w=0.8546 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)A132.CB) [> 2.3576 = 3.9293 < 5.1081] w=0.8465 to align # Constraint # added constraint: constraint((T0317)L74.CB, (T0317)A108.CB) [> 3.7253 = 6.2088 < 8.0715] w=0.8449 to align # Constraint # added constraint: constraint((T0317)S100.CB, (T0317)N135.CB) [> 3.5960 = 5.9933 < 7.7913] w=0.8384 to align # Constraint # added constraint: constraint((T0317)L110.CB, (T0317)A121.CB) [> 3.2954 = 5.4924 < 7.1401] w=0.8384 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)V131.CB) [> 2.9407 = 4.9012 < 6.3716] w=0.8379 to align # Constraint # added constraint: constraint((T0317)S100.CB, (T0317)P134.CB) [> 2.3700 = 3.9501 < 5.1351] w=0.8061 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)Y94.CB) [> 4.4949 = 7.4915 < 9.7389] w=0.8037 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)R59.CB) [> 3.2576 = 5.4294 < 7.0582] w=0.7882 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)L58.CB) [> 3.6298 = 6.0497 < 7.8646] w=0.7882 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)E57.CB) [> 3.2895 = 5.4826 < 7.1273] w=0.7882 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)A56.CB) [> 3.8311 = 6.3851 < 8.3007] w=0.7882 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)E133.CB) [> 2.6490 = 4.4151 < 5.7396] w=0.7819 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)E133.CB) [> 4.2885 = 7.1475 < 9.2917] w=0.7819 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)P134.CB) [> 3.5982 = 5.9969 < 7.7960] w=0.7819 to align # Constraint # added constraint: constraint((T0317)F122.CB, (T0317)A132.CB) [> 3.9749 = 6.6248 < 8.6123] w=0.7819 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)G98.CA) [> 3.6018 = 6.0030 < 7.8039] w=0.7748 to align # Constraint # added constraint: constraint((T0317)C78.CB, (T0317)Y109.CB) [> 3.4307 = 5.7178 < 7.4331] w=0.7722 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)R101.CB) [> 4.1313 = 6.8855 < 8.9511] w=0.7714 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)A84.CB) [> 3.3216 = 5.5361 < 7.1969] w=0.7688 to align # Constraint # added constraint: constraint((T0317)G36.CA, (T0317)G89.CA) [> 3.2015 = 5.3358 < 6.9366] w=0.7657 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)M81.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.7641 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)Y94.CB) [> 2.7819 = 4.6365 < 6.0274] w=0.7590 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)F122.CB) [> 4.4972 = 7.4953 < 9.7439] w=0.7586 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)V93.CB) [> 4.1163 = 6.8605 < 8.9186] w=0.7578 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)R101.CB) [> 3.5061 = 5.8436 < 7.5966] w=0.7563 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)Y94.CB) [> 4.5510 = 7.5849 < 9.8604] w=0.7556 to align # Constraint # added constraint: constraint((T0317)F122.CB, (T0317)L142.CB) [> 4.3738 = 7.2896 < 9.4765] w=0.7536 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)V62.CB) [> 3.4381 = 5.7301 < 7.4492] w=0.7482 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)V55.CB) [> 3.7683 = 6.2805 < 8.1646] w=0.7473 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)V93.CB) [> 4.6709 = 7.7848 < 10.1203] w=0.7467 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)Y145.CB) [> 3.3312 = 5.5521 < 7.2177] w=0.7422 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)Y94.CB) [> 3.6433 = 6.0722 < 7.8938] w=0.7420 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)F138.CB) [> 4.3382 = 7.2304 < 9.3995] w=0.7334 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)V93.CB) [> 3.6695 = 6.1158 < 7.9506] w=0.7166 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)L58.CB) [> 3.3997 = 5.6662 < 7.3660] w=0.7159 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)L92.CB) [> 3.4883 = 5.8137 < 7.5579] w=0.7093 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)P134.CB) [> 4.0585 = 6.7642 < 8.7935] w=0.7091 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)C95.CB) [> 4.5579 = 7.5966 < 9.8755] w=0.7090 to align # Constraint # added constraint: constraint((T0317)N22.CB, (T0317)Y94.CB) [> 4.0740 = 6.7900 < 8.8270] w=0.7038 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)E57.CB) [> 4.3360 = 7.2267 < 9.3947] w=0.6993 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)C91.CB) [> 4.4114 = 7.3523 < 9.5580] w=0.6953 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)R129.CB) [> 4.3389 = 7.2314 < 9.4009] w=0.6848 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)V60.CB) [> 3.4970 = 5.8283 < 7.5768] w=0.6801 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)E133.CB) [> 3.5324 = 5.8873 < 7.6535] w=0.6768 to align # Constraint # added constraint: constraint((T0317)L118.CB, (T0317)E146.CB) [> 3.5981 = 5.9968 < 7.7958] w=0.6752 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)E146.CB) [> 3.6872 = 6.1453 < 7.9889] w=0.6701 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)A121.CB) [> 3.3861 = 5.6436 < 7.3366] w=0.6624 to align # Constraint # added constraint: constraint((T0317)A67.CB, (T0317)G137.CA) [> 3.6553 = 6.0922 < 7.9199] w=0.6610 to align # Constraint # added constraint: constraint((T0317)A35.CB, (T0317)L92.CB) [> 4.4884 = 7.4807 < 9.7249] w=0.6607 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)E57.CB) [> 4.0089 = 6.6815 < 8.6859] w=0.6366 to align # Constraint # added constraint: constraint((T0317)L74.CB, (T0317)Y145.CB) [> 3.6804 = 6.1340 < 7.9742] w=0.6348 to align # Constraint # added constraint: constraint((T0317)T77.CB, (T0317)V105.CB) [> 3.5858 = 5.9763 < 7.7692] w=0.6251 to align # Constraint # added constraint: constraint((T0317)M81.CB, (T0317)Y109.CB) [> 3.6951 = 6.1585 < 8.0061] w=0.6222 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)C95.CB) [> 4.2547 = 7.0912 < 9.2186] w=0.6198 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)M81.CB) [> 3.9427 = 6.5712 < 8.5426] w=0.6187 to align # Constraint # added constraint: constraint((T0317)L71.CB, (T0317)Y145.CB) [> 3.0297 = 5.0495 < 6.5644] w=0.6055 to align # Constraint # added constraint: constraint((T0317)R99.CB, (T0317)P130.CB) [> 4.1160 = 6.8599 < 8.9179] w=0.6032 to align # Constraint # added constraint: constraint((T0317)E82.CB, (T0317)Y109.CB) [> 4.2933 = 7.1555 < 9.3022] w=0.6025 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)G54.CA) [> 3.7597 = 6.2661 < 8.1459] w=0.6011 to align # Constraint # added constraint: constraint((T0317)L71.CB, (T0317)Q141.CB) [> 3.9415 = 6.5691 < 8.5398] w=0.5810 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)C106.CB) [> 3.9987 = 6.6644 < 8.6638] w=0.5793 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)R59.CB) [> 4.5745 = 7.6242 < 9.9114] w=0.5695 to align # Constraint # added constraint: constraint((T0317)L74.CB, (T0317)V105.CB) [> 4.3092 = 7.1820 < 9.3366] w=0.5691 to align # Constraint # added constraint: constraint((T0317)N97.CB, (T0317)V131.CB) [> 4.4386 = 7.3977 < 9.6170] w=0.5632 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)L58.CB) [> 4.1940 = 6.9901 < 9.0871] w=0.5573 to align # Constraint # added constraint: constraint((T0317)G36.CA, (T0317)S90.CB) [> 3.6756 = 6.1260 < 7.9638] w=0.5480 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)Y94.CB) [> 3.3277 = 5.5462 < 7.2100] w=0.5476 to align # Constraint # added constraint: constraint((T0317)S100.CB, (T0317)V131.CB) [> 4.5785 = 7.6308 < 9.9200] w=0.5471 to align # Constraint # added constraint: constraint((T0317)L58.CB, (T0317)A80.CB) [> 3.6943 = 6.1571 < 8.0043] w=0.5412 to align # Constraint # added constraint: constraint((T0317)D64.CB, (T0317)R101.CB) [> 4.1166 = 6.8610 < 8.9193] w=0.5404 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)V60.CB) [> 4.0520 = 6.7533 < 8.7793] w=0.5331 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)L58.CB) [> 4.0820 = 6.8033 < 8.8443] w=0.5331 to align # Constraint # added constraint: constraint((T0317)C78.CB, (T0317)V105.CB) [> 4.1343 = 6.8905 < 8.9576] w=0.5217 to align # Constraint # added constraint: constraint((T0317)T77.CB, (T0317)A108.CB) [> 4.2696 = 7.1161 < 9.2509] w=0.5201 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)A84.CB) [> 4.2879 = 7.1465 < 9.2905] w=0.5182 to align # Constraint # added constraint: constraint((T0317)S100.CB, (T0317)A132.CB) [> 4.5815 = 7.6358 < 9.9266] w=0.5176 to align # Constraint # added constraint: constraint((T0317)S102.CB, (T0317)A132.CB) [> 4.4318 = 7.3863 < 9.6021] w=0.5162 to align # Constraint # added constraint: constraint((T0317)A35.CB, (T0317)G89.CA) [> 3.7003 = 6.1671 < 8.0173] w=0.5152 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)V60.CB) [> 4.3124 = 7.1874 < 9.3436] w=0.5089 to align # Constraint # added constraint: constraint((T0317)V60.CB, (T0317)T77.CB) [> 3.7471 = 6.2451 < 8.1187] w=0.4930 to align # Constraint # added constraint: constraint((T0317)L31.CB, (T0317)L92.CB) [> 4.4452 = 7.4086 < 9.6312] w=0.4905 to align # Constraint # added constraint: constraint((T0317)C78.CB, (T0317)R112.CB) [> 3.5583 = 5.9306 < 7.7097] w=0.4889 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)S90.CB) [> 3.9134 = 6.5224 < 8.4791] w=0.4862 to align # Constraint # added constraint: constraint((T0317)D64.CB, (T0317)K96.CB) [> 4.1844 = 6.9740 < 9.0661] w=0.4842 to align # Constraint # added constraint: constraint((T0317)A67.CB, (T0317)A104.CB) [> 4.4527 = 7.4212 < 9.6476] w=0.4742 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)A132.CB) [> 4.3801 = 7.3001 < 9.4902] w=0.4653 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)K96.CB) [> 3.4917 = 5.8194 < 7.5652] w=0.4582 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)V131.CB) [> 4.4656 = 7.4426 < 9.6754] w=0.4582 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)V62.CB) [> 4.2804 = 7.1340 < 9.2742] w=0.4560 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)V55.CB) [> 3.8962 = 6.4936 < 8.4417] w=0.4523 to align # Constraint # added constraint: constraint((T0317)V60.CB, (T0317)H73.CB) [> 3.4708 = 5.7846 < 7.5200] w=0.4444 to align # Constraint # added constraint: constraint((T0317)E75.CB, (T0317)L149.CB) [> 3.5231 = 5.8719 < 7.6335] w=0.4419 to align # Constraint # added constraint: constraint((T0317)C106.CB, (T0317)A132.CB) [> 4.3577 = 7.2629 < 9.4418] w=0.4411 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)V93.CB) [> 3.6753 = 6.1255 < 7.9631] w=0.4288 to align # Constraint # added constraint: constraint((T0317)D64.CB, (T0317)S100.CB) [> 4.1396 = 6.8994 < 8.9692] w=0.4196 to align # Constraint # added constraint: constraint((T0317)L32.CB, (T0317)V55.CB) [> 3.9968 = 6.6613 < 8.6597] w=0.4119 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)C91.CB) [> 3.5484 = 5.9140 < 7.6883] w=0.4037 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)G54.CA) [> 3.6339 = 6.0565 < 7.8735] w=0.4021 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)G54.CA) [> 4.0133 = 6.6889 < 8.6955] w=0.4021 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)A80.CB) [> 3.9892 = 6.6487 < 8.6434] w=0.3959 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)A56.CB) [> 3.4707 = 5.7845 < 7.5198] w=0.3940 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)V85.CB) [> 3.6374 = 6.0623 < 7.8810] w=0.3923 to align # Constraint # added constraint: constraint((T0317)N22.CB, (T0317)G98.CA) [> 3.5357 = 5.8928 < 7.6607] w=0.3896 to align # Constraint # added constraint: constraint((T0317)A17.CB, (T0317)S90.CB) [> 3.3251 = 5.5418 < 7.2043] w=0.3863 to align # Constraint # added constraint: constraint((T0317)V60.CB, (T0317)P76.CB) [> 3.8771 = 6.4619 < 8.4004] w=0.3794 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)P61.CB) [> 3.3892 = 5.6487 < 7.3433] w=0.3791 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)R59.CB) [> 3.4709 = 5.7848 < 7.5203] w=0.3760 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)S102.CB) [> 3.6129 = 6.0215 < 7.8279] w=0.3722 to align # Constraint # added constraint: constraint((T0317)L110.CB, (T0317)M124.CB) [> 4.0996 = 6.8327 < 8.8825] w=0.3717 to align # Constraint # added constraint: constraint((T0317)A121.CB, (T0317)L142.CB) [> 4.3209 = 7.2015 < 9.3620] w=0.3707 to align # Constraint # added constraint: constraint((T0317)P66.CB, (T0317)F138.CB) [> 4.5197 = 7.5328 < 9.7926] w=0.3637 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)P61.CB) [> 4.0388 = 6.7313 < 8.7507] w=0.3636 to align # Constraint # added constraint: constraint((T0317)D64.CB, (T0317)C95.CB) [> 4.4442 = 7.4070 < 9.6291] w=0.3631 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)S102.CB) [> 2.9885 = 4.9807 < 6.4750] w=0.3528 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)L92.CB) [> 3.9549 = 6.5915 < 8.5689] w=0.3490 to align # Constraint # added constraint: constraint((T0317)L74.CB, (T0317)Q141.CB) [> 4.2745 = 7.1241 < 9.2614] w=0.3456 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)R99.CB) [> 4.1936 = 6.9893 < 9.0861] w=0.3452 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)A103.CB) [> 4.4351 = 7.3918 < 9.6094] w=0.3452 to align # Constraint # added constraint: constraint((T0317)R112.CB, (T0317)L149.CB) [> 3.7478 = 6.2463 < 8.1202] w=0.3386 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)A132.CB) [> 4.4033 = 7.3389 < 9.5405] w=0.3371 to align # Constraint # added constraint: constraint((T0317)E57.CB, (T0317)T77.CB) [> 3.7200 = 6.2000 < 8.0599] w=0.3353 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)S102.CB) [> 4.0409 = 6.7348 < 8.7552] w=0.3331 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)H73.CB) [> 3.6999 = 6.1665 < 8.0165] w=0.3313 to align # Constraint # added constraint: constraint((T0317)V41.CB, (T0317)S102.CB) [> 4.6581 = 7.7635 < 10.0925] w=0.3303 to align # Constraint # added constraint: constraint((T0317)A17.CB, (T0317)C91.CB) [> 3.8489 = 6.4148 < 8.3392] w=0.3297 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)S90.CB) [> 4.3465 = 7.2441 < 9.4174] w=0.3232 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)G89.CA) [> 4.0952 = 6.8254 < 8.8730] w=0.3232 to align # Constraint # added constraint: constraint((T0317)N22.CB, (T0317)C95.CB) [> 4.2058 = 7.0097 < 9.1126] w=0.3232 to align # Constraint # added constraint: constraint((T0317)L110.CB, (T0317)V125.CB) [> 4.4513 = 7.4188 < 9.6444] w=0.3182 to align # Constraint # added constraint: constraint((T0317)M81.CB, (T0317)V105.CB) [> 4.3679 = 7.2798 < 9.4637] w=0.3181 to align # Constraint # added constraint: constraint((T0317)L74.CB, (T0317)A104.CB) [> 4.3840 = 7.3066 < 9.4986] w=0.3129 to align # Constraint # added constraint: constraint((T0317)A23.CB, (T0317)Y94.CB) [> 3.9039 = 6.5065 < 8.4584] w=0.3088 to align # Constraint # added constraint: constraint((T0317)T77.CB, (T0317)Y109.CB) [> 4.1964 = 6.9940 < 9.0922] w=0.2989 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)A80.CB) [> 4.2162 = 7.0271 < 9.1352] w=0.2989 to align # Constraint # added constraint: constraint((T0317)P61.CB, (T0317)H73.CB) [> 3.6680 = 6.1134 < 7.9474] w=0.2933 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)S102.CB) [> 3.8628 = 6.4381 < 8.3695] w=0.2910 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)P61.CB) [> 4.0288 = 6.7146 < 8.7290] w=0.2909 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)C91.CB) [> 4.0531 = 6.7551 < 8.7816] w=0.2753 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)L149.CB) [> 3.8018 = 6.3363 < 8.2371] w=0.2717 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)V62.CB) [> 3.9911 = 6.6519 < 8.6474] w=0.2617 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)Y145.CB) [> 3.7859 = 6.3099 < 8.2028] w=0.2600 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)G88.CA) [> 4.0243 = 6.7072 < 8.7194] w=0.2528 to align # Constraint # added constraint: constraint((T0317)A23.CB, (T0317)K96.CB) [> 3.0077 = 5.0129 < 6.5168] w=0.2523 to align # Constraint # added constraint: constraint((T0317)A23.CB, (T0317)C95.CB) [> 4.2370 = 7.0617 < 9.1802] w=0.2523 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)V93.CB) [> 4.2368 = 7.0614 < 9.1798] w=0.2523 to align # Constraint # added constraint: constraint((T0317)M81.CB, (T0317)V93.CB) [> 4.4616 = 7.4360 < 9.6668] w=0.2495 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)A104.CB) [> 4.5732 = 7.6219 < 9.9085] w=0.2482 to align # Constraint # added constraint: constraint((T0317)R59.CB, (T0317)T77.CB) [> 3.5691 = 5.9485 < 7.7330] w=0.2466 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)C106.CB) [> 3.6246 = 6.0410 < 7.8533] w=0.2429 to align # Constraint # added constraint: constraint((T0317)Q46.CB, (T0317)P61.CB) [> 4.2443 = 7.0738 < 9.1959] w=0.2424 to align # Constraint # added constraint: constraint((T0317)E57.CB, (T0317)A80.CB) [> 4.0085 = 6.6808 < 8.6850] w=0.2389 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)V60.CB) [> 4.4423 = 7.4038 < 9.6250] w=0.2359 to align # Constraint # added constraint: constraint((T0317)I37.CB, (T0317)G54.CA) [> 4.4633 = 7.4388 < 9.6704] w=0.2309 to align # Constraint # added constraint: constraint((T0317)A23.CB, (T0317)N97.CB) [> 4.5578 = 7.5964 < 9.8753] w=0.2280 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)I37.CB) [> 4.0768 = 6.7947 < 8.8331] w=0.2268 to align # Constraint # added constraint: constraint((T0317)L70.CB, (T0317)Q141.CB) [> 3.8850 = 6.4750 < 8.4176] w=0.2252 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)A103.CB) [> 3.9010 = 6.5016 < 8.4522] w=0.2187 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)K96.CB) [> 3.9986 = 6.6644 < 8.6636] w=0.2186 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)P61.CB) [> 4.3174 = 7.1957 < 9.3545] w=0.2181 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)L149.CB) [> 4.1656 = 6.9427 < 9.0255] w=0.2142 to align # Constraint # added constraint: constraint((T0317)L58.CB, (T0317)T77.CB) [> 4.1994 = 6.9991 < 9.0988] w=0.2109 to align # Constraint # added constraint: constraint((T0317)A12.CB, (T0317)A128.CB) [> 3.1061 = 5.1769 < 6.7300] w=0.2020 to align # Constraint # added constraint: constraint((T0317)T29.CB, (T0317)V55.CB) [> 4.2792 = 7.1321 < 9.2717] w=0.2020 to align # Constraint # added constraint: constraint((T0317)A56.CB, (T0317)A84.CB) [> 3.9166 = 6.5276 < 8.4859] w=0.2017 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)G21.CA) [> 2.8929 = 4.8216 < 6.2680] w=0.1939 to align # Constraint # added constraint: constraint((T0317)H73.CB, (T0317)V105.CB) [> 4.4809 = 7.4681 < 9.7086] w=0.1858 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)I20.CB) [> 3.8171 = 6.3618 < 8.2704] w=0.1858 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)F63.CB) [> 3.5687 = 5.9478 < 7.7321] w=0.1779 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)C106.CB) [> 3.5202 = 5.8669 < 7.6270] w=0.1777 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)A121.CB) [> 4.4296 = 7.3826 < 9.5974] w=0.1777 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)A128.CB) [> 3.0026 = 5.0043 < 6.5056] w=0.1777 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)V125.CB) [> 3.5331 = 5.8885 < 7.6551] w=0.1777 to align # Constraint # added constraint: constraint((T0317)A12.CB, (T0317)G21.CA) [> 3.9417 = 6.5695 < 8.5404] w=0.1777 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)M124.CB) [> 4.2060 = 7.0100 < 9.1130] w=0.1777 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)L74.CB) [> 4.4928 = 7.4879 < 9.7343] w=0.1773 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)C95.CB) [> 4.3954 = 7.3257 < 9.5234] w=0.1771 to align # Constraint # added constraint: constraint((T0317)E57.CB, (T0317)A84.CB) [> 3.9771 = 6.6286 < 8.6171] w=0.1739 to align # Constraint # added constraint: constraint((T0317)C106.CB, (T0317)A121.CB) [> 4.6609 = 7.7681 < 10.0985] w=0.1697 to align # Constraint # added constraint: constraint((T0317)A15.CB, (T0317)L110.CB) [> 4.2729 = 7.1215 < 9.2580] w=0.1697 to align # Constraint # added constraint: constraint((T0317)R13.CB, (T0317)A128.CB) [> 4.0429 = 6.7381 < 8.7595] w=0.1697 to align # Constraint # added constraint: constraint((T0317)D65.CB, (T0317)F138.CB) [> 4.6880 = 7.8134 < 10.1574] w=0.1673 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)V125.CB) [> 4.4581 = 7.4302 < 9.6592] w=0.1626 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)Y145.CB) [> 4.6178 = 7.6964 < 10.0053] w=0.1580 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)P134.CB) [> 3.7098 = 6.1830 < 8.0379] w=0.1535 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)C106.CB) [> 3.7861 = 6.3102 < 8.2032] w=0.1535 to align # Constraint # added constraint: constraint((T0317)D69.CB, (T0317)A104.CB) [> 3.7174 = 6.1956 < 8.0543] w=0.1532 to align # Constraint # added constraint: constraint((T0317)A104.CB, (T0317)W139.CB) [> 4.5738 = 7.6230 < 9.9098] w=0.1479 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)V55.CB) [> 4.0965 = 6.8275 < 8.8757] w=0.1470 to align # Constraint # added constraint: constraint((T0317)T29.CB, (T0317)P53.CB) [> 3.3816 = 5.6361 < 7.3269] w=0.1454 to align # Constraint # added constraint: constraint((T0317)N42.CB, (T0317)V93.CB) [> 4.6948 = 7.8247 < 10.1722] w=0.1454 to align # Constraint # added constraint: constraint((T0317)A103.CB, (T0317)K126.CB) [> 4.5414 = 7.5691 < 9.8398] w=0.1454 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)A153.CB) [> 3.6935 = 6.1558 < 8.0026] w=0.1393 to align # Constraint # added constraint: constraint((T0317)C91.CB, (T0317)Y109.CB) [> 4.3780 = 7.2966 < 9.4856] w=0.1388 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)R129.CB) [> 4.1359 = 6.8932 < 8.9611] w=0.1374 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)N22.CB) [> 4.3762 = 7.2937 < 9.4818] w=0.1374 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)L110.CB) [> 4.4039 = 7.3398 < 9.5417] w=0.1374 to align # Constraint # added constraint: constraint((T0317)P16.CB, (T0317)V85.CB) [> 4.3642 = 7.2736 < 9.4557] w=0.1374 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)L92.CB) [> 3.8780 = 6.4634 < 8.4024] w=0.1374 to align # Constraint # added constraint: constraint((T0317)F19.CB, (T0317)A103.CB) [> 3.9534 = 6.5890 < 8.5656] w=0.1374 to align # Constraint # added constraint: constraint((T0317)V85.CB, (T0317)Y109.CB) [> 4.3833 = 7.3054 < 9.4971] w=0.1352 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)A132.CB) [> 4.3720 = 7.2866 < 9.4726] w=0.1298 to align # Constraint # added constraint: constraint((T0317)V33.CB, (T0317)P53.CB) [> 3.6662 = 6.1104 < 7.9435] w=0.1289 to align # Constraint # added constraint: constraint((T0317)A79.CB, (T0317)R112.CB) [> 4.3859 = 7.3098 < 9.5027] w=0.1230 to align # Constraint # added constraint: constraint((T0317)L110.CB, (T0317)R120.CB) [> 4.5352 = 7.5587 < 9.8264] w=0.1212 to align # Constraint # added constraint: constraint((T0317)S102.CB, (T0317)R129.CB) [> 4.7073 = 7.8456 < 10.1992] w=0.1212 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)N42.CB) [> 4.6779 = 7.7965 < 10.1354] w=0.1209 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)I37.CB) [> 3.6676 = 6.1126 < 7.9464] w=0.1131 to align # Constraint # added constraint: constraint((T0317)A23.CB, (T0317)N42.CB) [> 4.6001 = 7.6669 < 9.9670] w=0.1125 to align # Constraint # added constraint: constraint((T0317)T38.CB, (T0317)D87.CB) [> 4.6007 = 7.6679 < 9.9682] w=0.1077 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)A25.CB) [> 2.8569 = 4.7615 < 6.1899] w=0.1050 to align # Constraint # added constraint: constraint((T0317)P10.CB, (T0317)A25.CB) [> 3.5402 = 5.9004 < 7.6705] w=0.1050 to align # Constraint # added constraint: constraint((T0317)S44.CB, (T0317)S102.CB) [> 4.5546 = 7.5910 < 9.8683] w=0.1050 to align # Constraint # added constraint: constraint((T0317)L32.CB, (T0317)S90.CB) [> 4.5351 = 7.5585 < 9.8261] w=0.1050 to align # Constraint # added constraint: constraint((T0317)V60.CB, (T0317)V105.CB) [> 4.5730 = 7.6216 < 9.9081] w=0.1047 to align # Constraint # added constraint: constraint((T0317)L70.CB, (T0317)R101.CB) [> 4.0297 = 6.7162 < 8.7311] w=0.0970 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)M124.CB) [> 4.1841 = 6.9735 < 9.0656] w=0.0970 to align # Constraint # added constraint: constraint((T0317)V43.CB, (T0317)L58.CB) [> 4.6782 = 7.7970 < 10.1361] w=0.0883 to align # Constraint # added constraint: constraint((T0317)P10.CB, (T0317)L31.CB) [> 3.6715 = 6.1192 < 7.9549] w=0.0808 to align # Constraint # added constraint: constraint((T0317)P9.CB, (T0317)N22.CB) [> 3.3585 = 5.5975 < 7.2768] w=0.0808 to align # Constraint # added constraint: constraint((T0317)N22.CB, (T0317)S102.CB) [> 4.6239 = 7.7066 < 10.0185] w=0.0808 to align # Constraint # added constraint: constraint((T0317)D119.CB, (T0317)Q143.CB) [> 4.5384 = 7.5641 < 9.8333] w=0.0727 to align # Constraint # added constraint: constraint((T0317)F11.CB, (T0317)I37.CB) [> 4.6754 = 7.7923 < 10.1300] w=0.0727 to align # Constraint # added constraint: constraint((T0317)A26.CB, (T0317)C40.CB) [> 3.8860 = 6.4766 < 8.4196] w=0.0727 to align # Constraint # added constraint: constraint((T0317)A26.CB, (T0317)N42.CB) [> 3.9355 = 6.5591 < 8.5268] w=0.0727 to align # Constraint # added constraint: constraint((T0317)A26.CB, (T0317)L92.CB) [> 3.9588 = 6.5979 < 8.5773] w=0.0727 to align # Constraint # added constraint: constraint((T0317)A26.CB, (T0317)Y94.CB) [> 2.7952 = 4.6588 < 6.0564] w=0.0727 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)V105.CB) [> 4.5965 = 7.6609 < 9.9592] w=0.0727 to align # Constraint # added constraint: constraint((T0317)L71.CB, (T0317)A108.CB) [> 4.6399 = 7.7332 < 10.0532] w=0.0727 to align # Constraint # added constraint: constraint((T0317)N22.CB, (T0317)R45.CB) [> 4.1943 = 6.9906 < 9.0877] w=0.0727 to align # Constraint # added constraint: constraint((T0317)A7.CB, (T0317)N97.CB) [> 3.5111 = 5.8518 < 7.6074] w=0.0646 to align # Constraint # added constraint: constraint((T0317)P9.CB, (T0317)G21.CA) [> 3.6924 = 6.1539 < 8.0001] w=0.0646 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)L118.CB) [> 4.6372 = 7.7286 < 10.0472] w=0.0566 to align # Constraint # added constraint: constraint((T0317)A7.CB, (T0317)G98.CA) [> 4.0573 = 6.7622 < 8.7908] w=0.0566 to align # Constraint # added constraint: constraint((T0317)S4.CB, (T0317)N97.CB) [> 4.4561 = 7.4268 < 9.6548] w=0.0566 to align # Constraint # added constraint: constraint((T0317)S4.CB, (T0317)K96.CB) [> 3.3574 = 5.5956 < 7.2743] w=0.0566 to align # Constraint # added constraint: constraint((T0317)P9.CB, (T0317)R24.CB) [> 4.1077 = 6.8461 < 8.9000] w=0.0566 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)C95.CB) [> 4.5535 = 7.5891 < 9.8658] w=0.0566 to align # Constraint # added constraint: constraint((T0317)A17.CB, (T0317)C106.CB) [> 2.8688 = 4.7814 < 6.2158] w=0.0566 to align # Constraint # added constraint: constraint((T0317)M111.CB, (T0317)L155.CB) [> 3.7793 = 6.2988 < 8.1884] w=0.0562 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)V60.CB) [> 3.5277 = 5.8794 < 7.6433] w=0.0486 to align # Constraint # added constraint: constraint((T0317)V33.CB, (T0317)L58.CB) [> 3.1935 = 5.3225 < 6.9193] w=0.0486 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)N97.CB) [> 4.1089 = 6.8481 < 8.9025] w=0.0485 to align # Constraint # added constraint: constraint((T0317)R45.CB, (T0317)R59.CB) [> 3.3810 = 5.6350 < 7.3255] w=0.0485 to align # Constraint # added constraint: constraint((T0317)V62.CB, (T0317)A104.CB) [> 4.7344 = 7.8907 < 10.2579] w=0.0485 to align # Constraint # added constraint: constraint((T0317)T29.CB, (T0317)Q47.CB) [> 4.5686 = 7.6143 < 9.8985] w=0.0432 to align # Constraint # added constraint: constraint((T0317)C40.CB, (T0317)P61.CB) [> 4.2269 = 7.0448 < 9.1582] w=0.0405 to align # Constraint # added constraint: constraint((T0317)L39.CB, (T0317)P61.CB) [> 3.0440 = 5.0733 < 6.5953] w=0.0405 to align # Constraint # added constraint: constraint((T0317)S4.CB, (T0317)G98.CA) [> 4.6432 = 7.7386 < 10.0602] w=0.0404 to align # Constraint # added constraint: constraint((T0317)W139.CB, (T0317)R157.CB) [> 4.3418 = 7.2364 < 9.4073] w=0.0404 to align # Constraint # added constraint: constraint((T0317)L136.CB, (T0317)R157.CB) [> 3.1720 = 5.2866 < 6.8726] w=0.0404 to align # Constraint # added constraint: constraint((T0317)E5.CB, (T0317)Y94.CB) [> 4.6589 = 7.7648 < 10.0943] w=0.0404 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)A23.CB) [> 3.6834 = 6.1391 < 7.9808] w=0.0404 to align # Constraint # added constraint: constraint((T0317)P8.CB, (T0317)Y94.CB) [> 4.1844 = 6.9739 < 9.0661] w=0.0404 to align # Constraint # added constraint: constraint((T0317)P8.CB, (T0317)A23.CB) [> 3.9183 = 6.5305 < 8.4896] w=0.0404 to align # Constraint # added constraint: constraint((T0317)A12.CB, (T0317)H113.CB) [> 3.7490 = 6.2483 < 8.1228] w=0.0404 to align # Constraint # added constraint: constraint((T0317)L32.CB, (T0317)L58.CB) [> 4.4759 = 7.4598 < 9.6977] w=0.0325 to align # Constraint # added constraint: constraint((T0317)A15.CB, (T0317)C106.CB) [> 4.5572 = 7.5953 < 9.8739] w=0.0323 to align # Constraint # added constraint: constraint((T0317)P8.CB, (T0317)P130.CB) [> 4.0964 = 6.8273 < 8.8754] w=0.0323 to align # Constraint # added constraint: constraint((T0317)T3.CB, (T0317)N97.CB) [> 3.5025 = 5.8375 < 7.5888] w=0.0323 to align # Constraint # added constraint: constraint((T0317)E5.CB, (T0317)A23.CB) [> 3.3747 = 5.6246 < 7.3119] w=0.0323 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)N22.CB) [> 4.4680 = 7.4467 < 9.6807] w=0.0323 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)R24.CB) [> 4.2966 = 7.1610 < 9.3093] w=0.0323 to align # Constraint # added constraint: constraint((T0317)L70.CB, (T0317)A108.CB) [> 4.5590 = 7.5983 < 9.8778] w=0.0323 to align # Constraint # added constraint: constraint((T0317)G98.CA, (T0317)P130.CB) [> 3.5570 = 5.9284 < 7.7069] w=0.0323 to align # Constraint # added constraint: constraint((T0317)S117.CB, (T0317)L155.CB) [> 3.1955 = 5.3258 < 6.9235] w=0.0320 to align # Constraint # added constraint: constraint((T0317)A7.CB, (T0317)K96.CB) [> 3.4558 = 5.7597 < 7.4876] w=0.0242 to align # Constraint # added constraint: constraint((T0317)Q141.CB, (T0317)I154.CB) [> 3.9100 = 6.5167 < 8.4717] w=0.0242 to align # Constraint # added constraint: constraint((T0317)L118.CB, (T0317)A153.CB) [> 3.7231 = 6.2051 < 8.0667] w=0.0242 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)I154.CB) [> 4.2315 = 7.0525 < 9.1683] w=0.0242 to align # Constraint # added constraint: constraint((T0317)G27.CA, (T0317)Y94.CB) [> 4.5304 = 7.5506 < 9.8158] w=0.0242 to align # Constraint # added constraint: constraint((T0317)K126.CB, (T0317)W139.CB) [> 4.7960 = 7.9934 < 10.3914] w=0.0242 to align # Constraint # added constraint: constraint((T0317)T107.CB, (T0317)F138.CB) [> 4.2444 = 7.0741 < 9.1963] w=0.0242 to align # Constraint # added constraint: constraint((T0317)S102.CB, (T0317)A128.CB) [> 4.6851 = 7.8086 < 10.1511] w=0.0242 to align # Constraint # added constraint: constraint((T0317)A17.CB, (T0317)L110.CB) [> 3.7825 = 6.3042 < 8.1954] w=0.0242 to align # Constraint # added constraint: constraint((T0317)I20.CB, (T0317)T107.CB) [> 4.7431 = 7.9052 < 10.2768] w=0.0242 to align # Constraint # added constraint: constraint((T0317)V14.CB, (T0317)T107.CB) [> 3.5290 = 5.8817 < 7.6462] w=0.0242 to align # Constraint # added constraint: constraint((T0317)C78.CB, (T0317)C106.CB) [> 4.7479 = 7.9132 < 10.2872] w=0.0242 to align # Constraint # added constraint: constraint((T0317)L18.CB, (T0317)C95.CB) [> 4.7515 = 7.9192 < 10.2950] w=0.0242 to align # Constraint # added constraint: constraint((T0317)L58.CB, (T0317)A83.CB) [> 3.9684 = 6.6140 < 8.5982] w=0.0236 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)K96.CB) [> 4.6502 = 7.7503 < 10.0754] w=0.0162 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)C95.CB) [> 4.7339 = 7.8898 < 10.2567] w=0.0162 to align # Constraint # added constraint: constraint((T0317)A6.CB, (T0317)Y94.CB) [> 3.9198 = 6.5330 < 8.4929] w=0.0162 to align # Constraint # added constraint: constraint((T0317)P10.CB, (T0317)C95.CB) [> 3.9369 = 6.5616 < 8.5300] w=0.0162 to align # Constraint # added constraint: constraint((T0317)T3.CB, (T0317)Y94.CB) [> 3.5439 = 5.9065 < 7.6785] w=0.0162 to align # Constraint # added constraint: constraint((T0317)R59.CB, (T0317)L70.CB) [> 4.1712 = 6.9520 < 9.0375] w=0.0162 to align # Constraint # added constraint: constraint((T0317)G21.CA, (T0317)R45.CB) [> 4.4432 = 7.4053 < 9.6268] w=0.0162 to align # Constraint # added constraint: constraint((T0317)P16.CB, (T0317)Y109.CB) [> 4.3590 = 7.2650 < 9.4445] w=0.0162 to align # Constraint # added constraint: constraint((T0317)C91.CB, (T0317)C106.CB) [> 4.7281 = 7.8802 < 10.2443] w=0.0162 to align # Constraint # added constraint: constraint((T0317)A108.CB, (T0317)N135.CB) [> 4.5265 = 7.5442 < 9.8074] w=0.0162 to align # Constraint # added constraint: constraint((T0317)P53.CB, (T0317)C95.CB) [> 4.7106 = 7.8510 < 10.2063] w=0.0162 to align # Constraint # added constraint: constraint((T0317)F63.CB, (T0317)Q141.CB) [> 4.7583 = 7.9306 < 10.3097] w=0.0162 to align # Constraint # added constraint: constraint((T0317)C106.CB, (T0317)P130.CB) [> 3.8527 = 6.4212 < 8.3475] w=0.0162 to align # Constraint # added constraint: constraint((T0317)S102.CB, (T0317)P130.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.0162 to align # Constraint # added constraint: constraint((T0317)E57.CB, (T0317)V105.CB) [> 4.7241 = 7.8735 < 10.2355] w=0.0159 to align # Constraint # added constraint: constraint((T0317)F63.CB, (T0317)R101.CB) [> 3.7592 = 6.2654 < 8.1450] w=0.0159 to align # Constraint # added constraint: constraint((T0317)P134.CB, (T0317)L155.CB) [> 3.2224 = 5.3707 < 6.9819] w=0.0081 to align # Constraint # added constraint: constraint((T0317)R114.CB, (T0317)I154.CB) [> 3.4779 = 5.7965 < 7.5355] w=0.0081 to align # Constraint # added constraint: constraint((T0317)R59.CB, (T0317)V105.CB) [> 4.6768 = 7.7946 < 10.1330] w=0.0078 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0317/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0317/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 6, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 287, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 289, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 291, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 293, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 331, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 337, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 359, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 361, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 363, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 365, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 367, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 369, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 371, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 373, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 393, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 395, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 397, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 399, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 401, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 405, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 467, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 469, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 471, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 473, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 483, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 485, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 487, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 489, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 527, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 529, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 531, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 533, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 150, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 154, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 156, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 462, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 464, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 438, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 440, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 442, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 444, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 257 model score -0.4554 model score -0.4527 model score -0.1731 model score -0.1697 model score -0.1725 model score -0.4420 model score -0.4256 model score -0.3946 model score -0.2525 model score -0.4236 model score 0.0801 model score -0.3813 model score -0.4531 model score -0.3722 model score 0.1391 model score -0.5107 model score 0.4797 model score 0.4778 model score 0.6176 model score 1.7894 model score 1.0704 model score 1.3176 model score 1.5793 model score 1.3473 model score 1.1104 model score 0.1067 model score -0.4689 model score -0.4435 model score -0.4674 model score -0.4744 model score -0.4380 model score -0.4749 model score -0.5029 model score -0.5104 model score -0.5009 model score -0.5010 model score -0.4532 model score -0.1810 model score -0.3277 model score 0.0903 model score 0.3438 model score 0.1129 model score 1.2586 model score 1.2608 model score 1.2545 model score 1.2561 model score 1.2575 model score -0.2387 model score -0.4739 model score -0.2613 model score -0.4459 model score -0.3728 model score -0.4997 model score -0.4749 model score -0.5029 model score -0.5010 model score -0.4459 model score -0.5013 model score 0.8378 model score 1.4163 model score 0.5403 model score 1.5172 model score 1.2643 model score 1.2806 model score 1.2899 model score 1.2669 model score 1.2708 model score 1.2643 model score 1.2651 model score 1.2806 model score 1.2909 model score 1.2908 model score 2.2693 model score 2.0619 model score 2.0304 model score 2.1533 model score 2.1193 model score -0.4765 model score -0.0266 model score 0.3471 model score -0.2271 model score -0.0703 model score 1.2631 model score 1.2655 model score 1.2664 model score 1.2764 model score 1.2656 model score -0.5000 model score -0.4507 model score -0.4269 model score -0.1462 model score -0.4352 model score -0.4540 model score -0.4735 model score -0.5210 model score -0.4362 model score -0.3470 model score -0.5051 model score 0.0921 model score 0.0921 model score -0.3717 model score -0.3569 model score -0.4748 model score 0.1009 model score -0.3473 model score -0.4253 model score -0.3797 model score 0.2533 model score -0.2610 model score -0.3946 model score -0.5206 model score -0.4683 model score -0.3598 model score -0.1553 model score 0.0157 model score -0.4597 model score -0.4398 model score -0.4599 model score -0.3693 model score -0.4671 model score -0.5104 model score -0.5164 model score -0.5209 model score -0.5166 model score -0.5185 model score -0.5177 model score -0.3929 model score -0.4531 model score -0.4728 model score -0.4992 model score -0.5166 model score -0.4740 model score -0.4413 model score -0.4258 model score -0.5141 model score -0.5216 model score -0.3209 model score -0.4708 model score -0.4441 model score -0.4441 model score -0.4788 model score -0.4788 model score -0.4687 model score -0.4740 model score -0.2956 model score -0.3537 model score -0.2725 model score -0.4772 model score -0.5189 model score -0.4793 model score -0.4556 model score -0.4873 model score -0.2743 model score -0.4546 model score -0.4518 model score -0.5037 model score -0.5047 model score -0.4564 model score 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-0.5250 max: 2.3372 weight: 0.4352 eval: 1.2712 min: -0.5250 max: 2.3372 weight: 0.4374 eval: 1.2643 min: -0.5250 max: 2.3372 weight: 0.4287 eval: 1.2918 min: -0.5250 max: 2.3372 weight: 0.4289 eval: 1.2911 min: -0.5250 max: 2.3372 weight: 0.4288 eval: 1.2915 min: -0.5250 max: 2.3372 weight: 0.9822 eval: -0.4683 min: -0.5250 max: 2.3372 weight: 0.9827 eval: -0.4700 min: -0.5250 max: 2.3372 weight: 0.9733 eval: -0.4402 min: -0.5250 max: 2.3372 weight: 0.9841 eval: -0.4745 min: -0.5250 max: 2.3372 weight: 0.9806 eval: -0.4632 min: -0.5250 max: 2.3372 weight: 0.1000 eval: 2.3372 min: -0.5250 max: 2.3372 weight: 0.1612 eval: 2.1427 min: -0.5250 max: 2.3372 weight: 0.3351 eval: 1.5895 min: -0.5250 max: 2.3372 weight: 0.2233 eval: 1.9452 min: -0.5250 max: 2.3372 weight: 0.1948 eval: 2.0357 min: -0.5250 max: 2.3372 weight: 0.8086 eval: 0.0838 min: -0.5250 max: 2.3372 weight: 0.9510 eval: -0.3690 min: -0.5250 max: 2.3372 weight: 0.9872 eval: -0.4843 min: -0.5250 max: 2.3372 weight: 0.7871 eval: 0.1520 min: -0.5250 max: 2.3372 weight: 0.8235 eval: 0.0364 min: -0.5250 max: 2.3372 weight: 0.9834 eval: -0.4723 min: -0.5250 max: 2.3372 weight: 0.9779 eval: -0.4547 min: -0.5250 max: 2.3372 weight: 0.9373 eval: -0.3255 min: -0.5250 max: 2.3372 weight: 0.8028 eval: 0.1021 min: -0.5250 max: 2.3372 weight: 0.9736 eval: -0.4411 min: -0.5250 max: 2.3372 weight: 0.9954 eval: -0.5104 min: -0.5250 max: 2.3372 weight: 0.9705 eval: -0.4313 min: -0.5250 max: 2.3372 weight: 0.7665 eval: 0.2177 min: -0.5250 max: 2.3372 weight: 0.8053 eval: 0.0943 min: -0.5250 max: 2.3372 weight: 0.8207 eval: 0.0452 min: -0.5250 max: 2.3372 weight: 0.9627 eval: -0.4062 min: -0.5250 max: 2.3372 weight: 0.9804 eval: -0.4626 min: -0.5250 max: 2.3372 Adding 4592 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -278.7178, CN propb: -278.7178 weights: 0.4885 constraints: 402 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 402 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 402 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 4190 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 4190 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4592 # command: