# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0316/ # command:# Making conformation for sequence T0316 numbered 1 through 373 Created new target T0316 from T0316.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0316/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0316//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0316/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0316//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0316/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0316/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0316/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gsoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1gsoA/merged-good-all-a2m # 1gsoA read from 1gsoA/merged-good-all-a2m # found chain 1gsoA in training set Warning: unaligning (T0316)S5 because first residue in template chain is (1gsoA)E-2 Warning: unaligning (T0316)K265 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gsoA)K153 Warning: unaligning (T0316)L272 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gsoA)K153 T0316 6 :KTRVVVGMSGGVDSSVTALL 1gsoA -1 :FMKVLVIGNGGREHALAWKA # choosing archetypes in rotamer library T0316 29 :QGYD 1gsoA 20 :AQSP T0316 33 :VIGIFMKNWD 1gsoA 25 :VETVFVAPGN T0316 50 :CT 1gsoA 46 :VA T0316 52 :ATEDYKDVVAVADQIGIPYYSV 1gsoA 49 :GVTDIPALLDFAQNEKIDLTIV T0316 103 :CNKEIKFKAFLDYAITLGADY 1gsoA 71 :GPEAPLVKGVVDTFRAAGLKI T0316 126 :T 1gsoA 92 :F T0316 134 :RDEDGTVHML 1gsoA 93 :GPTAGAAQLE T0316 161 :Q 1gsoA 103 :G T0316 175 :EKPEVRRLAEEAGLSTAK 1gsoA 104 :SKAFTKDFLARHKIPTAE T0316 198 :GICFIGEKNFKNFLSNYL 1gsoA 122 :YQNFTEVEPALAYLREKG T0316 257 :NA 1gsoA 140 :AP T0316 261 :FVVG 1gsoA 142 :IVIK T0316 273 :YVGQGFYHDSLMSTS 1gsoA 154 :GVIVAMTLEEAEAAV T0316 293 :VHFTREMPE 1gsoA 169 :HDMLAGNAF T0316 302 :EFTLECTAKFRYRQPDSKVTVHVKGEKTEVIFA 1gsoA 179 :DAGHRIVIEEFLDGEEASFIVMVDGEHVLPMAT T0316 335 :EPQRAITPGQ 1gsoA 213 :QDHKRVGDKD T0316 350 :DGEECLGG 1gsoA 223 :TGPNTGGM T0316 358 :GLIDNAYRDGQVC 1gsoA 232 :AYSPAPVVTDDVH Number of specific fragments extracted= 19 number of extra gaps= 0 total=19 Number of alignments=1 # 1gsoA read from 1gsoA/merged-good-all-a2m # found chain 1gsoA in training set Warning: unaligning (T0316)S5 because first residue in template chain is (1gsoA)E-2 Warning: unaligning (T0316)T240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gsoA)K153 Warning: unaligning (T0316)L247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gsoA)K153 T0316 6 :KTRVVVGMSGGVD 1gsoA -1 :FMKVLVIGNGGRE T0316 20 :SVTALLL 1gsoA 13 :HALAWKA T0316 29 :QGYD 1gsoA 20 :AQSP T0316 33 :VIGIFMKNWDDTDENGVC 1gsoA 25 :VETVFVAPGNAGTALEPA T0316 70 :YYSVNFE 1gsoA 43 :LQNVAIG T0316 94 :GR 1gsoA 50 :VT T0316 108 :KFKAFLDYAITLGADYVATGHYARV 1gsoA 52 :DIPALLDFAQNEKIDLTIVGPEAPL T0316 134 :RDE 1gsoA 77 :VKG T0316 139 :TVHMLRGVDNGK 1gsoA 88 :GLKIFGPTAGAA T0316 161 :QEQL 1gsoA 100 :QLEG T0316 175 :EKPEVRRLAEEAGLSTAKKK 1gsoA 104 :SKAFTKDFLARHKIPTAEYQ T0316 200 :CFIGEKNFKNFLSNYL 1gsoA 124 :NFTEVEPALAYLREKG T0316 234 :AGLMYY 1gsoA 140 :APIVIK T0316 248 :GIGGQHG 1gsoA 154 :GVIVAMT T0316 286 :TSLEASQVHFTREM 1gsoA 161 :LEEAEAAVHDMLAG T0316 300 :PEEFTLECTAKFRYRQPD 1gsoA 177 :FGDAGHRIVIEEFLDGEE T0316 343 :GQAVVFYDGEECLGGGLI 1gsoA 195 :ASFIVMVDGEHVLPMATS T0316 361 :DNAYRDGQVCQY 1gsoA 216 :KRVGDKDTGPNT Number of specific fragments extracted= 18 number of extra gaps= 0 total=37 Number of alignments=2 # 1gsoA read from 1gsoA/merged-good-all-a2m # found chain 1gsoA in training set Warning: unaligning (T0316)S5 because first residue in template chain is (1gsoA)E-2 Warning: unaligning (T0316)G264 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gsoA)K153 Warning: unaligning (T0316)S285 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gsoA)K153 T0316 6 :KTRVVVGMSGGVDSSVTALL 1gsoA -1 :FMKVLVIGNGGREHALAWKA T0316 28 :EQGYDVIGIFMKNWDD 1gsoA 20 :AQSPLVETVFVAPGNA T0316 49 :VCTATEDYKDVVAVADQIGIPYYSVNFEKEY 1gsoA 46 :VAIGVTDIPALLDFAQNEKIDLTIVGPEAPL T0316 109 :FKAFLDYAITLGADYVAT 1gsoA 77 :VKGVVDTFRAAGLKIFGP T0316 147 :DNGKDQTY 1gsoA 95 :TAGAAQLE T0316 175 :EKPEVRRLAEEAGLSTAKKKD 1gsoA 104 :SKAFTKDFLARHKIPTAEYQN T0316 201 :FIGEKNFKNFLSNY 1gsoA 125 :FTEVEPALAYLREK T0316 257 :NAPWFVV 1gsoA 139 :GAPIVIK T0316 286 :TSLEASQ 1gsoA 154 :GVIVAMT T0316 294 :HFTREMPEE 1gsoA 170 :DMLAGNAFG T0316 315 :QPDSKVTVH 1gsoA 179 :DAGHRIVIE T0316 333 :FAEPQRA 1gsoA 189 :FLDGEEA T0316 344 :QAVVFYDGEECLGGGLID 1gsoA 196 :SFIVMVDGEHVLPMATSQ T0316 362 :NAYRDGQVCQY 1gsoA 216 :KRVGDKDTGPN Number of specific fragments extracted= 14 number of extra gaps= 0 total=51 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c5sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0316/2c5sA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0316/2c5sA/merged-good-all-a2m.gz for input Trying 2c5sA/merged-good-all-a2m Error: Couldn't open file 2c5sA/merged-good-all-a2m or 2c5sA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ct9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ct9A expands to /projects/compbio/data/pdb/1ct9.pdb.gz 1ct9A:# T0316 read from 1ct9A/merged-good-all-a2m # 1ct9A read from 1ct9A/merged-good-all-a2m # adding 1ct9A to template set # found chain 1ct9A in template set Warning: unaligning (T0316)V33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ct9A)L267 T0316 9 :VVVGMSGGVDSSVTALLLKEQ 1ct9A 229 :YGVLLSGGLDSSIISAITKKY T0316 34 :IGIFM 1ct9A 268 :HSFAV T0316 46 :ENGVC 1ct9A 273 :GLPGS T0316 54 :EDYKDVVAVADQIGIPYYSVNFE 1ct9A 278 :PDLKAAQEVANHLGTVHHEIHFT T0316 77 :KEYWDRVFEYFL 1ct9A 302 :QEGLDAIRDVIY T0316 100 :DVMCNKEIK 1ct9A 316 :ETYDVTTIR T0316 109 :FKAFLDYAITLGADYVATGHYA 1ct9A 329 :MYLMSRKIKAMGIKMVLSGEGS T0316 134 :RD 1ct9A 351 :DE T0316 142 :MLRGVDNGKDQT 1ct9A 353 :VFGGYLYFHKAP T0316 160 :SQEQL 1ct9A 365 :NAKEL T0316 176 :KPEVRRLAEE 1ct9A 370 :HEETVRKLLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=62 Number of alignments=4 # 1ct9A read from 1ct9A/merged-good-all-a2m # found chain 1ct9A in template set Warning: unaligning (T0316)V33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ct9A)L267 Warning: unaligning (T0316)S196 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ct9A)K426 Warning: unaligning (T0316)C200 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ct9A)K426 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1ct9A 225 :SDVPYGVLLSGGLDSSIISAITKKY T0316 34 :IGIFM 1ct9A 268 :HSFAV T0316 46 :ENG 1ct9A 273 :GLP T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEY 1ct9A 276 :GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHI T0316 95 :RTPN 1ct9A 316 :ETYD T0316 100 :DVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVH 1ct9A 320 :VTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFH T0316 147 :DNGK 1ct9A 362 :KAPN T0316 153 :TYFLSQLSQEQLQK 1ct9A 366 :AKELHEETVRKLLA T0316 167 :TMFPLGH 1ct9A 399 :ARVPFLD T0316 178 :EVRRLAEE 1ct9A 407 :KFLDVAMR T0316 188 :LS 1ct9A 415 :IN T0316 191 :AKKKD 1ct9A 417 :PQDKM T0316 202 :IGEKNFKNFLSNYLP 1ct9A 427 :MEKHILRECFEAYLP T0316 217 :AQP 1ct9A 446 :WRQ Number of specific fragments extracted= 14 number of extra gaps= 0 total=76 Number of alignments=5 # 1ct9A read from 1ct9A/merged-good-all-a2m # found chain 1ct9A in template set Warning: unaligning (T0316)I34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ct9A)L267 T0316 7 :TRVVVGMSGGVDSSVTALLLKEQ 1ct9A 227 :VPYGVLLSGGLDSSIISAITKKY T0316 35 :GIFMKNWDD 1ct9A 268 :HSFAVGLPG T0316 53 :TEDYKDVVAVADQIGIPYYSVNF 1ct9A 277 :SPDLKAAQEVANHLGTVHHEIHF T0316 76 :EKEYWDRVFEYF 1ct9A 301 :VQEGLDAIRDVI T0316 88 :LAEYRA 1ct9A 320 :VTTIRA T0316 107 :IKFKAFLDYAITLGADYVATGHYA 1ct9A 327 :TPMYLMSRKIKAMGIKMVLSGEGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=82 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ru8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ru8A expands to /projects/compbio/data/pdb/1ru8.pdb.gz 1ru8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0316 read from 1ru8A/merged-good-all-a2m # 1ru8A read from 1ru8A/merged-good-all-a2m # adding 1ru8A to template set # found chain 1ru8A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1ru8A)G3 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)T49 Warning: unaligning (T0316)T51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)T49 Warning: unaligning (T0316)G127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)A100 Warning: unaligning (T0316)H128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)A100 T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENG 1ru8A 4 :LADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEESYM T0316 52 :ATEDYKDV 1ru8A 50 :INANLTDL T0316 62 :VADQIGIPYYSVNFE 1ru8A 58 :QARALGIPLVKGFTQ T0316 77 :K 1ru8A 77 :K T0316 108 :KFKAFLDYAITLGADYVAT 1ru8A 78 :EVEDLKRVLSGLKIQGIVA T0316 172 :GHLEKPEVRRLAEEAGLSTAK 1ru8A 101 :SKYQRKRIEKVAKELGLEVYT T0316 196 :STG 1ru8A 122 :PAW T0316 204 :EKNFKNFLSNYLPA 1ru8A 125 :GRDAKEYMRELLNL T0316 220 :GRMMTV 1ru8A 139 :GFKIMV T0316 226 :DGRDMGEHAGLMY 1ru8A 177 :KVHVAGEGGEFET T0316 245 :GGLGIGGQH 1ru8A 190 :FVLDMPLFK T0316 286 :TSLEASQVHFTRE 1ru8A 199 :YKIVVDKAKKVWE T0316 300 :PEEFTLECTAKFRY 1ru8A 212 :PCTSSGKLIIEEAH Number of specific fragments extracted= 13 number of extra gaps= 1 total=95 Number of alignments=7 # 1ru8A read from 1ru8A/merged-good-all-a2m # found chain 1ru8A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1ru8A)G3 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)T49 Warning: unaligning (T0316)T51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)T49 Warning: unaligning (T0316)G127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)A100 Warning: unaligning (T0316)V132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)A100 T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENG 1ru8A 4 :LADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEESYM T0316 52 :ATEDYKDV 1ru8A 50 :INANLTDL T0316 62 :VADQIGIPYYSVNFE 1ru8A 58 :QARALGIPLVKGFTQ T0316 94 :GR 1ru8A 73 :GE T0316 104 :NKE 1ru8A 75 :KEK T0316 108 :KFKAFLDYAITLGADYVAT 1ru8A 78 :EVEDLKRVLSGLKIQGIVA T0316 135 :D 1ru8A 101 :S T0316 137 :DG 1ru8A 102 :KY T0316 175 :EKPEVRRLAEEAGLSTAKKKDSTG 1ru8A 104 :QRKRIEKVAKELGLEVYTPAWGRD T0316 207 :FKNFLSNYLP 1ru8A 128 :AKEYMRELLN T0316 234 :AGLMYYTIGQRG 1ru8A 138 :LGFKIMVVGVSA T0316 246 :GL 1ru8A 151 :GL T0316 248 :GIGGQH 1ru8A 155 :SWLGRI T0316 278 :FYHDSLMSTSLEAS 1ru8A 161 :LDESALEELITLNE T0316 292 :QVHFTREMPEEFTLEC 1ru8A 186 :EFETFVLDMPLFKYKI T0316 308 :TAKFRYRQPDSKVTVHVKGEKTE 1ru8A 205 :KAKKVWEPCTSSGKLIIEEAHLE Number of specific fragments extracted= 16 number of extra gaps= 1 total=111 Number of alignments=8 # 1ru8A read from 1ru8A/merged-good-all-a2m # found chain 1ru8A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1ru8A)G3 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)T49 Warning: unaligning (T0316)T51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)T49 Warning: unaligning (T0316)G127 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ru8A)A100 Warning: unaligning (T0316)H128 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ru8A)A100 T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENG 1ru8A 4 :LADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEESYM T0316 52 :ATEDYKDV 1ru8A 50 :INANLTDL T0316 62 :VADQIGIPYYSVNFEK 1ru8A 58 :QARALGIPLVKGFTQG T0316 104 :NKEIKFKAFLDYAITLGADYVAT 1ru8A 74 :EKEKEVEDLKRVLSGLKIQGIVA T0316 172 :GHLEKPEVRRLAEEAGLSTAKK 1ru8A 101 :SKYQRKRIEKVAKELGLEVYTP T0316 202 :IGEKNFKNFLSNYLP 1ru8A 123 :AWGRDAKEYMRELLN T0316 219 :PGRMMTV 1ru8A 139 :GFKIMVV T0316 246 :GLGIGG 1ru8A 177 :KVHVAG T0316 254 :GGDNAPWFVVGKDL 1ru8A 183 :EGGEFETFVLDMPL T0316 284 :MSTSLEASQVHFTRE 1ru8A 197 :FKYKIVVDKAKKVWE T0316 300 :PEEFTLECTAK 1ru8A 212 :PCTSSGKLIIE T0316 319 :KVTVHVK 1ru8A 223 :EAHLESK Number of specific fragments extracted= 12 number of extra gaps= 1 total=123 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m64A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m64A expands to /projects/compbio/data/pdb/1m64.pdb.gz 1m64A:# T0316 read from 1m64A/merged-good-all-a2m # 1m64A read from 1m64A/merged-good-all-a2m # adding 1m64A to template set # found chain 1m64A in template set T0316 7 :TRVVVGMSGGV 1m64A 127 :VDVVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFMKNW 1m64A 138 :GFSAAISATDSGAKVILIEKEPV T0316 49 :V 1m64A 161 :I T0316 52 :ATEDYKDVVAVADQI 1m64A 185 :ITDSPELMFEDTMKG T0316 67 :GI 1m64A 202 :NI T0316 76 :EKEYWDRVFEYFL 1m64A 205 :DPALVKVLSSHSK T0316 89 :AEYRAGRTPNPD 1m64A 221 :DWMTAMGADLTD T0316 101 :VMCNKEI 1m64A 251 :AGVGAHV T0316 109 :FKAFLDYAITLGAD 1m64A 258 :VQVLYDNAVKRNID T0316 134 :RDEDGT 1m64A 283 :KDDKGT T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGIGG 1m64A 484 :NLPRALNEGNYYAIEVTPGVHHTMGG T0316 272 :LY 1m64A 510 :VM T0316 341 :TPGQAVVFYDGEECLGG 1m64A 512 :IDTKAEVMNAKKQVIPG Number of specific fragments extracted= 13 number of extra gaps= 0 total=136 Number of alignments=10 # 1m64A read from 1m64A/merged-good-all-a2m # found chain 1m64A in template set T0316 6 :KTRVVVGMSGGV 1m64A 126 :TVDVVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFM 1m64A 138 :GFSAAISATDSGAKVILIEK T0316 39 :KNWDDTDEN 1m64A 159 :PVIGGNAKL T0316 50 :C 1m64A 184 :K T0316 52 :ATEDYKDVVAVADQI 1m64A 185 :ITDSPELMFEDTMKG T0316 67 :GI 1m64A 202 :NI T0316 75 :FEKEYWDRVFEYFLA 1m64A 204 :NDPALVKVLSSHSKD T0316 90 :EYRAGRTPNPD 1m64A 222 :WMTAMGADLTD T0316 101 :VMCNKEI 1m64A 251 :AGVGAHV T0316 109 :FKAFLDYAITLGADY 1m64A 258 :VQVLYDNAVKRNIDL T0316 220 :GR 1m64A 455 :GI T0316 279 :YHDSLMSTSLEASQVHFTREMPEEF 1m64A 457 :DGKALTETVARYNSLVSSGKDTDFE T0316 333 :FAEPQRAITPGQAVV 1m64A 482 :RPNLPRALNEGNYYA T0316 348 :FYDGEEC 1m64A 498 :EVTPGVH T0316 355 :LGGGLIDN 1m64A 507 :MGGVMIDT T0316 363 :AYRDGQVCQY 1m64A 519 :MNAKKQVIPG Number of specific fragments extracted= 16 number of extra gaps= 0 total=152 Number of alignments=11 # 1m64A read from 1m64A/merged-good-all-a2m # found chain 1m64A in template set T0316 2 :SDNSKTRVVVGMSGGV 1m64A 122 :APHDTVDVVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1m64A 138 :GFSAAISATDSGAKVILIEKEPVI T0316 47 :NGVCTATEDYKDVVAVADQ 1m64A 184 :KITDSPELMFEDTMKGGQN T0316 74 :NFEKEYWDRVFEYFLAEYR 1m64A 203 :INDPALVKVLSSHSKDSVD T0316 93 :AGRTPNPDVM 1m64A 225 :AMGADLTDVG T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYF 1m64A 255 :AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV T0316 156 :LSQLSQEQLQKTMFPLGHLE 1m64A 315 :GFAKNNERVAKLDPSLKGFI T0316 178 :EVRRLAEEAGLS 1m64A 344 :DGLDVAENAGGA T0316 222 :MMTVD 1m64A 356 :LKDMQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=161 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1korA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1korA expands to /projects/compbio/data/pdb/1kor.pdb.gz 1korA:# T0316 read from 1korA/merged-good-all-a2m # 1korA read from 1korA/merged-good-all-a2m # adding 1korA to template set # found chain 1korA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1korA)M1 Warning: unaligning (T0316)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1korA)P171 Warning: unaligning (T0316)P342 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1korA)G370 Warning: unaligning (T0316)E353 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1korA)G370 T0316 8 :RVVVGMSGGVDSSVTALLLKEQ 1korA 2 :KIVLAYSGGLDTSIILKWLKET T0316 30 :GYDVIGIFM 1korA 25 :RAEVIAFTA T0316 46 :ENG 1korA 34 :DIG T0316 52 :ATEDYKDVVAVADQIGI 1korA 37 :QGEEVEEAREKALRTGA T0316 69 :PYYSVNFEKEYWDRVFEYFL 1korA 55 :KAIALDLKEEFVRDFVFPMM T0316 92 :RAGRTPNPDVMCNKEI 1korA 80 :YEGYYLLGTSIARPLI T0316 109 :FKAFLDYAITLGADYVATGHYARV 1korA 96 :AKHLVRIAEEEGAEAIAHGATGKG T0316 134 :RDED 1korA 120 :NDQV T0316 139 :TVHM 1korA 124 :RFEL T0316 143 :LRGV 1korA 133 :KPDI T0316 166 :KTMFPLGHL 1korA 137 :KVIAPWREW T0316 175 :EKPEVRRLAEEAGLST 1korA 149 :GRKEMIAYAEAHGIPV T0316 195 :DSTGICFIG 1korA 177 :NLLHISYEG T0316 209 :NFLSNY 1korA 186 :GVLEDP T0316 215 :LPAQPGRMMTV 1korA 193 :AEPPKGMFRMT T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGIG 1korA 241 :RLNEIGGRHGVGRVDIVENRFVGMK T0316 259 :PWFVVGK 1korA 266 :SRGVYET T0316 280 :HDSL 1korA 292 :REVL T0316 284 :MSTSLEASQVHFTRE 1korA 302 :SPKYAELVYYGFWYA T0316 300 :PE 1korA 317 :PE T0316 314 :RQPDSKVTVHVKGEKTEVIFAEPQRAIT 1korA 331 :RSVTGVARLKLYKGNVYVVGRKAPKSLY Number of specific fragments extracted= 21 number of extra gaps= 0 total=182 Number of alignments=13 # 1korA read from 1korA/merged-good-all-a2m # found chain 1korA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1korA)M1 Warning: unaligning (T0316)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1korA)P171 Warning: unaligning (T0316)D366 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1korA)G370 T0316 8 :RVVVGMSGGVDSSVTALLLKE 1korA 2 :KIVLAYSGGLDTSIILKWLKE T0316 29 :QGYDVIGIFM 1korA 24 :YRAEVIAFTA T0316 46 :ENG 1korA 34 :DIG T0316 52 :ATEDYKDVVAVADQIGI 1korA 37 :QGEEVEEAREKALRTGA T0316 69 :PYYSVNFEKEYWDRVFEYFLA 1korA 55 :KAIALDLKEEFVRDFVFPMMR T0316 90 :EYRAGRTPNPDVMCNKEI 1korA 78 :AVYEGYYLLGTSIARPLI T0316 109 :FKAFLDYAITLGADYVATG 1korA 96 :AKHLVRIAEEEGAEAIAHG T0316 132 :VARDEDGTVHMLRG 1korA 115 :ATGKGNDQVRFELT T0316 153 :TYFLSQL 1korA 129 :AYALKPD T0316 165 :QKTMFPLGHLE 1korA 136 :IKVIAPWREWS T0316 176 :KPEVRRLAEEAGLST 1korA 150 :RKEMIAYAEAHGIPV T0316 195 :DSTGICFIGEKNFKNFLSNYLPAQP 1korA 172 :YSMDANLLHISYEGGVLEDPWAEPP T0316 220 :GRMMTVDGRDMGEHAGLMYYTIGQRGG 1korA 208 :EAPDAPEYVEVEFFEGDPVAVNGERLS T0316 248 :GIGGQHGG 1korA 253 :RVDIVENR T0316 256 :DNAP 1korA 262 :VGMK T0316 260 :WFVV 1korA 267 :RGVY T0316 279 :YHDSLMSTSLEASQVHFTREMPEEFT 1korA 271 :ETPGGTILYHARRAVESLTLDREVLH T0316 338 :RAIT 1korA 331 :RSVT T0316 343 :GQAVV 1korA 335 :GVARL T0316 348 :FYDGEECLGGGLIDNAYR 1korA 341 :LYKGNVYVVGRKAPKSLY Number of specific fragments extracted= 20 number of extra gaps= 0 total=202 Number of alignments=14 # 1korA read from 1korA/merged-good-all-a2m # found chain 1korA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1korA)M1 Warning: unaligning (T0316)A191 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1korA)P171 Warning: unaligning (T0316)P219 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1korA)P171 T0316 8 :RVVVGMSGGVDSSVTALLLKEQ 1korA 2 :KIVLAYSGGLDTSIILKWLKET T0316 30 :GYDVIGIFMKNWDD 1korA 25 :RAEVIAFTADIGQG T0316 54 :EDYKDVVAVADQIGIP 1korA 39 :EEVEEAREKALRTGAS T0316 70 :YYSVNFEKEYWDR 1korA 56 :AIALDLKEEFVRD T0316 83 :VFEYFL 1korA 70 :VFPMMR T0316 93 :AGRTPNPDVMCNKEI 1korA 81 :EGYYLLGTSIARPLI T0316 109 :FKAFLDYAITLGADYVATGH 1korA 96 :AKHLVRIAEEEGAEAIAHGA T0316 135 :DEDG 1korA 116 :TGKG T0316 150 :KDQTYF 1korA 120 :NDQVRF T0316 156 :LSQLSQE 1korA 129 :AYALKPD T0316 166 :KTMFPLGHLE 1korA 137 :KVIAPWREWS T0316 176 :KPEVRRLAEEAGLST 1korA 150 :RKEMIAYAEAHGIPV T0316 220 :GRMMT 1korA 172 :YSMDA T0316 233 :HAGLMYYTIG 1korA 177 :NLLHISYEGG T0316 251 :GQHGGDNAP 1korA 187 :VLEDPWAEP T0316 276 :QGFYHD 1korA 196 :PKGMFR T0316 296 :TREMPEEF 1korA 202 :MTQDPEEA T0316 314 :RQPDSKVTVHVKGEKTEVIFAEP 1korA 210 :PDAPEYVEVEFFEGDPVAVNGER Number of specific fragments extracted= 18 number of extra gaps= 0 total=220 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v4vA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1v4vA/merged-good-all-a2m # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set Warning: unaligning (T0316)S5 because first residue in template chain is (1v4vA)G4 T0316 6 :KTRVVVGM 1v4vA 5 :MKRVVLAF T0316 19 :SSVTALLLKEQ 1v4vA 21 :MAPVYLALRGI T0316 30 :GYDVIGIFM 1v4vA 33 :GLKPLVLLT T0316 48 :GV 1v4vA 42 :GQ T0316 52 :A 1v4vA 44 :H T0316 56 :YKDVVAVADQIGIPY 1v4vA 45 :REQLRQALSLFGIQE T0316 71 :YSVNFE 1v4vA 61 :RNLDVM T0316 88 :LAEYRA 1v4vA 72 :LPDLAA T0316 106 :EIK 1v4vA 78 :RIL T0316 110 :KAFLDYAITLGADYVATG 1v4vA 81 :PQAARALKEMGADYVLVH T0316 129 :YARV 1v4vA 120 :HVEA T0316 133 :ARDEDGT 1v4vA 127 :SGNLKEP T0316 140 :VHMLRGV 1v4vA 289 :GAALGVP T0316 154 :YFLSQLSQEQLQKT 1v4vA 298 :VLRNVTERPEGLKA T0316 168 :MFPLGHLEKPEVRRLAEEA 1v4vA 313 :ILKLAGTDPEGVYRVVKGL Number of specific fragments extracted= 15 number of extra gaps= 0 total=235 Number of alignments=16 # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set Warning: unaligning (T0316)S5 because first residue in template chain is (1v4vA)G4 T0316 6 :KTRVVVGM 1v4vA 5 :MKRVVLAF T0316 19 :SSVTALLLKE 1v4vA 21 :MAPVYLALRG T0316 29 :QGYDVIGIFM 1v4vA 32 :PGLKPLVLLT T0316 46 :ENG 1v4vA 42 :GQH T0316 56 :YKDVVAVADQIGIPY 1v4vA 45 :REQLRQALSLFGIQE T0316 71 :YSVNFE 1v4vA 61 :RNLDVM T0316 77 :KEYW 1v4vA 73 :PDLA T0316 105 :KEI 1v4vA 77 :ARI T0316 109 :FKAFLDYAITLGADYVATG 1v4vA 80 :LPQAARALKEMGADYVLVH T0316 137 :DG 1v4vA 99 :GD T0316 139 :TVHMLRGVDNGK 1v4vA 199 :PYVTVTMHRREN T0316 153 :TYFLSQLSQ 1v4vA 211 :WPLLSDLAQ T0316 163 :QLQKTMFPLGHL 1v4vA 220 :ALKRVAEAFPHL T0316 175 :EKPEVRRLAEEA 1v4vA 239 :LNPVVREAVFPV T0316 187 :GLS 1v4vA 253 :GVR T0316 220 :GRM 1v4vA 293 :GVP T0316 272 :LYVGQG 1v4vA 296 :VVVLRN T0316 278 :FYHDSLMST 1v4vA 303 :TERPEGLKA Number of specific fragments extracted= 18 number of extra gaps= 0 total=253 Number of alignments=17 # 1v4vA read from 1v4vA/merged-good-all-a2m # found chain 1v4vA in training set T0316 6 :KTRVVVGMSGG 1v4vA 5 :MKRVVLAFGTR T0316 17 :VDSSVTALLLKE 1v4vA 19 :TKMAPVYLALRG T0316 29 :QGYDVIGIFM 1v4vA 32 :PGLKPLVLLT T0316 53 :TEDYKDVVAVADQIGIPY 1v4vA 42 :GQHREQLRQALSLFGIQE T0316 71 :YSVNF 1v4vA 61 :RNLDV T0316 76 :EKEYWDRVFEYFLAEYRAGRTPNPDVM 1v4vA 72 :LPDLAARILPQAARALKEMGADYVLVH T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARV 1v4vA 99 :GDTLTTFAVAWAAFLEGIPVGHVEAGLRS T0316 134 :RDEDGT 1v4vA 128 :GNLKEP T0316 158 :QLSQEQLQKTMF 1v4vA 134 :FPEEANRRLTDV T0316 175 :EKPEVRRLAEEAGLST 1v4vA 153 :PTPLAKANLLKEGKRE T0316 197 :TGICFIGE 1v4vA 169 :EGILVTGQ T0316 207 :FKNFLSNYLPAQPG 1v4vA 181 :AVLLAAKLGRLPEG T0316 255 :GDNAP 1v4vA 195 :LPEGP T0316 271 :ILYVG 1v4vA 200 :YVTVT T0316 276 :QGFYHDSLM 1v4vA 206 :HRRENWPLL Number of specific fragments extracted= 15 number of extra gaps= 0 total=268 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gy8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gy8A expands to /projects/compbio/data/pdb/1gy8.pdb.gz 1gy8A:# T0316 read from 1gy8A/merged-good-all-a2m # 1gy8A read from 1gy8A/merged-good-all-a2m # adding 1gy8A to template set # found chain 1gy8A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1gy8A)S-1 Warning: unaligning (T0316)G138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gy8A)N157 T0316 6 :KTRVVVG 1gy8A 0 :HMRVLVC T0316 19 :SSVTALLLKEQGYDVIGIFMKNW 1gy8A 14 :SHFVRALLRDTNHSVVIVDSLVG T0316 46 :ENGVCT 1gy8A 37 :THGKSD T0316 52 :ATEDYK 1gy8A 46 :TRENVA T0316 61 :AVADQI 1gy8A 52 :RKLQQS T0316 68 :IPYYSVNFE 1gy8A 69 :AALEVGDVR T0316 77 :KEYWDRVFEYFL 1gy8A 79 :EDFLNGVFTRHG T0316 89 :AEYRA 1gy8A 105 :GESVR T0316 104 :NKE 1gy8A 110 :DPL T0316 108 :KF 1gy8A 113 :KY T0316 110 :KAFLDYAITLGADYVATGHYARVARDED 1gy8A 123 :LRLLQAMLLHKCDKIIFSSSAAIFGNPT T0316 140 :V 1gy8A 284 :L T0316 143 :LRGVDNGKDQTYFLS 1gy8A 287 :VEKLGPNDKSKYFSV T0316 166 :KTMFPLGHLEKPEVRRLAEEA 1gy8A 302 :FNLGTSRGYSVREVIEVARKT T0316 187 :GLSTAKKKDS 1gy8A 326 :PIPVRECGRR Number of specific fragments extracted= 15 number of extra gaps= 0 total=283 Number of alignments=19 # 1gy8A read from 1gy8A/merged-good-all-a2m # found chain 1gy8A in template set Warning: unaligning (T0316)G138 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gy8A)N157 T0316 6 :KTRVVVG 1gy8A 0 :HMRVLVC T0316 19 :SSVTALLLKEQGYDVIGIFM 1gy8A 14 :SHFVRALLRDTNHSVVIVDS T0316 44 :TDENGVC 1gy8A 34 :LVGTHGK T0316 52 :ATEDY 1gy8A 41 :SDHVE T0316 57 :KDVVAVADQIG 1gy8A 48 :ENVARKLQQSD T0316 68 :IPYYSVNFE 1gy8A 69 :AALEVGDVR T0316 77 :KEYWDRVFEY 1gy8A 79 :EDFLNGVFTR T0316 95 :RTPN 1gy8A 89 :HGPI T0316 100 :D 1gy8A 93 :D T0316 106 :EI 1gy8A 120 :VG T0316 109 :FKAFLDYAITLGADYVATGHYARVARDED 1gy8A 122 :ILRLLQAMLLHKCDKIIFSSSAAIFGNPT T0316 139 :TVHMLRGVDNGK 1gy8A 298 :YFSVFNLGTSRG T0316 174 :LEKPEVRRLAEEA 1gy8A 310 :YSVREVIEVARKT T0316 187 :GLSTAKKKDSTGIC 1gy8A 326 :PIPVRECGRREGDP Number of specific fragments extracted= 14 number of extra gaps= 0 total=297 Number of alignments=20 # 1gy8A read from 1gy8A/merged-good-all-a2m # found chain 1gy8A in template set T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQ 1gy8A 0 :HMRVLVCGGAGYIGSHFVRALLRD T0316 30 :GYDVIGIFMKNWDD 1gy8A 25 :NHSVVIVDSLVGTH T0316 45 :DENGVCT 1gy8A 63 :PWADRYA T0316 52 :ATEDYKDVVAVADQI 1gy8A 75 :DVRNEDFLNGVFTRH T0316 67 :GIPYYSV 1gy8A 91 :PIDAVVH T0316 76 :EKEYWDRVFEY 1gy8A 111 :PLKYYDNNVVG T0316 109 :FKAFLDYAITLGADYVATGHYARVARDE 1gy8A 122 :ILRLLQAMLLHKCDKIIFSSSAAIFGNP T0316 145 :GVDNGKDQT 1gy8A 160 :PIDINAKKS T0316 162 :EQLQKTM 1gy8A 172 :PYGESKL T0316 176 :KPEVRRLAEEAGL 1gy8A 181 :ERMIRDCAEAYGI T0316 199 :ICF 1gy8A 196 :ICL Number of specific fragments extracted= 11 number of extra gaps= 0 total=308 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d13A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d13A expands to /projects/compbio/data/pdb/2d13.pdb.gz 2d13A:# T0316 read from 2d13A/merged-good-all-a2m # 2d13A read from 2d13A/merged-good-all-a2m # adding 2d13A to template set # found chain 2d13A in template set Warning: unaligning (T0316)N4 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0316)T53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0316)F75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWD 2d13A 3 :GLADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSE T0316 54 :ED 2d13A 52 :VE T0316 56 :YKDV 2d13A 55 :TSLQ T0316 63 :ADQIGIPYYSVN 2d13A 59 :ARALGIPIIKGF T0316 77 :KEYW 2d13A 76 :EKEV T0316 85 :EYFLAEYRA 2d13A 80 :EDLKNVLEG T0316 95 :RTP 2d13A 89 :LKV T0316 99 :PDVMCNKE 2d13A 96 :AGALASRY T0316 108 :KFKAFLDYAITLGADYV 2d13A 104 :QKERIENVARELGLKVY T0316 129 :YARVARDEDGTVHM 2d13A 121 :TPAWEKDPYQYMLE T0316 143 :LRGV 2d13A 149 :AYGL T0316 151 :DQTYFLSQLSQEQL 2d13A 153 :NESWLGRELNYKNL T0316 177 :PEVRRLAEEAGLSTAKKKDSTGICFIG 2d13A 167 :EELKKLSEKYGIHIAGEGGEFETFVLD T0316 215 :LPAQPGRMMTVDGRDM 2d13A 194 :MPFFKAKIVIDDAEKF T0316 233 :HAGLM 2d13A 210 :WDGLS T0316 329 :TEVIFAEPQ 2d13A 215 :GKFIIKRAH Number of specific fragments extracted= 16 number of extra gaps= 0 total=324 Number of alignments=22 # 2d13A read from 2d13A/merged-good-all-a2m # found chain 2d13A in template set Warning: unaligning (T0316)N4 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0316)D55 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0316)F75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0316)R92 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWD 2d13A 3 :GLADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSE T0316 56 :YKDVVAVADQIGIPYYSVN 2d13A 52 :VELTSLQARALGIPIIKGF T0316 93 :AGR 2d13A 75 :KEK T0316 108 :KFKAFLDYAITLGADYVATGHYAR 2d13A 78 :EVEDLKNVLEGLKVDGIVAGALAS T0316 162 :EQL 2d13A 102 :RYQ T0316 176 :KPEVRRLAEEAGLSTAKKKDST 2d13A 105 :KERIENVARELGLKVYTPAWEK T0316 202 :IGEKNFKNFLS 2d13A 127 :DPYQYMLEIIK T0316 234 :AGLMYYTIGQRG 2d13A 138 :LGFKVVFVAVSA T0316 246 :GLGI 2d13A 151 :GLNE T0316 254 :GGDNAP 2d13A 155 :SWLGRE T0316 278 :FYHDSLMSTSLEASQVHFTREMPEEF 2d13A 161 :LNYKNLEELKKLSEKYGIHIAGEGGE T0316 309 :AKFRYRQPD 2d13A 187 :FETFVLDMP T0316 319 :KVTVHVKGEKTEVIFAEPQR 2d13A 205 :DAEKFWDGLSGKFIIKRAHL Number of specific fragments extracted= 13 number of extra gaps= 0 total=337 Number of alignments=23 # 2d13A read from 2d13A/merged-good-all-a2m # found chain 2d13A in template set Warning: unaligning (T0316)N4 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0316)A52 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0316)F75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0316)E78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWD 2d13A 3 :GLADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSE T0316 53 :TEDYKD 2d13A 52 :VELTSL T0316 62 :VADQIGIPYYSVN 2d13A 58 :QARALGIPIIKGF T0316 79 :YWDRVFEYF 2d13A 78 :EVEDLKNVL T0316 92 :R 2d13A 87 :E T0316 94 :GRTPN 2d13A 88 :GLKVD T0316 100 :DVMCNKEIKFKAFLDYAITLGADYVAT 2d13A 96 :AGALASRYQKERIENVARELGLKVYTP T0316 138 :GTVHMLRGVDNGKDQTYFLSQLSQEQLQ 2d13A 140 :FKVVFVAVSAYGLNESWLGRELNYKNLE T0316 178 :EVRRLAEEAGLST 2d13A 168 :ELKKLSEKYGIHI T0316 250 :GGQH 2d13A 181 :AGEG T0316 256 :DNAPWFVVGKDL 2d13A 185 :GEFETFVLDMPF T0316 284 :MSTSLEASQVHF 2d13A 197 :FKAKIVIDDAEK T0316 323 :HVKGEKTEVIFAEPQR 2d13A 209 :FWDGLSGKFIIKRAHL Number of specific fragments extracted= 13 number of extra gaps= 0 total=350 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jgtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jgtA expands to /projects/compbio/data/pdb/1jgt.pdb.gz 1jgtA:# T0316 read from 1jgtA/merged-good-all-a2m # 1jgtA read from 1jgtA/merged-good-all-a2m # adding 1jgtA to template set # found chain 1jgtA in template set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQ 1jgtA 239 :TPGDTPLVVLSGGIDSSGVAACAHRA T0316 31 :YDVIGIFM 1jgtA 266 :GELDTVSM T0316 46 :ENG 1jgtA 274 :GTD T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1jgtA 277 :TSNEFREARAVVDHLRTRHREITIP T0316 88 :LAEYRA 1jgtA 302 :TTELLA T0316 100 :D 1jgtA 308 :Q T0316 101 :VMCNKEI 1jgtA 318 :SVDPDII T0316 110 :KAFLDYAITL 1jgtA 325 :EYLLPLTALY T0316 120 :GADYVATG 1jgtA 340 :PERRILTG T0316 128 :HYA 1jgtA 358 :HRE T0316 134 :RDEDGT 1jgtA 361 :DRLPAL T0316 140 :VHMLR 1jgtA 458 :RLLLD T0316 145 :GVDNGK 1jgtA 464 :GVAEDR T0316 152 :QTYFLSQLSQEQLQKT 1jgtA 470 :VHEAKRQVVRELFDLT T0316 168 :MFPLGHLEKPEVRR 1jgtA 489 :GRHPSEVDTDDVVR Number of specific fragments extracted= 15 number of extra gaps= 0 total=365 Number of alignments=25 # 1jgtA read from 1jgtA/merged-good-all-a2m # found chain 1jgtA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1jgtA 240 :PGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSM T0316 46 :ENG 1jgtA 274 :GTD T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1jgtA 277 :TSNEFREARAVVDHLRTRHREITIP T0316 89 :AEYRA 1jgtA 303 :TELLA T0316 102 :MCNKEI 1jgtA 318 :SVDPDI T0316 109 :FKAFLDYAITL 1jgtA 324 :IEYLLPLTALY T0316 120 :GADYVATGHYARVARDED 1jgtA 340 :PERRILTGYGADIPLGGM T0316 146 :VDN 1jgtA 358 :HRE T0316 151 :DQTYFLSQLSQEQLQK 1jgtA 361 :DRLPALDTVLAHDMAT T0316 167 :TMFPLGHLEKPEV 1jgtA 426 :LRAAMADALPAET T0316 180 :RRLAEEAGLST 1jgtA 457 :SRLLLDHGVAE T0316 279 :YHDSLMSTSLEASQVHFTREM 1jgtA 468 :DRVHEAKRQVVRELFDLTVGG T0316 300 :PEEFT 1jgtA 490 :RHPSE Number of specific fragments extracted= 13 number of extra gaps= 0 total=378 Number of alignments=26 # 1jgtA read from 1jgtA/merged-good-all-a2m # found chain 1jgtA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD 1jgtA 240 :PGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDTS T0316 54 :EDYKDVVAVADQIGIPYYSVNF 1jgtA 279 :NEFREARAVVDHLRTRHREITI T0316 76 :EKEYWDRVFEYF 1jgtA 302 :TTELLAQLPYAV T0316 92 :RAGRTPNPD 1jgtA 314 :WASESVDPD T0316 107 :I 1jgtA 323 :I T0316 109 :FKAFLDYAIT 1jgtA 324 :IEYLLPLTAL T0316 119 :LGADYVATGHYARV 1jgtA 339 :GPERRILTGYGADI T0316 166 :KTMFPLGHLEKPEVRRLAEEA 1jgtA 353 :PLGGMHREDRLPALDTVLAHD Number of specific fragments extracted= 8 number of extra gaps= 0 total=386 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1eft/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1eft expands to /projects/compbio/data/pdb/1eft.pdb.gz 1eft:Warning: there is no chain 1eft will retry with 1eftA # T0316 read from 1eft/merged-good-all-a2m # 1eft read from 1eft/merged-good-all-a2m # adding 1eft to template set # found chain 1eft in template set Warning: unaligning (T0316)V225 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)T232 Warning: unaligning (T0316)D229 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)V256 Warning: unaligning (T0316)M230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)V256 Warning: unaligning (T0316)G248 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)K275 Warning: unaligning (T0316)P259 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)G287 Warning: unaligning (T0316)W260 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)G287 Warning: unaligning (T0316)I360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)T401 Warning: unaligning (T0316)D361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)T401 T0316 7 :TRVVVGMS 1eft 100 :DGAILVVS T0316 19 :SSVTALLLKEQGYD 1eft 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1eft 131 :IVVFMN T0316 46 :ENGVCTATEDYKD 1eft 137 :KVDMVDDPELLDL T0316 59 :VVAVADQIGIP 1eft 154 :VRDLLNQYEFP T0316 70 :YYSVNFE 1eft 168 :VPVIRGS T0316 84 :FEYF 1eft 175 :ALLA T0316 113 :LDYAIT 1eft 179 :LEEMHK T0316 134 :R 1eft 185 :N T0316 154 :YFLSQLSQEQLQ 1eft 186 :PKTKRGENEWVD T0316 178 :EVRRLAEEAG 1eft 198 :KIWELLDAID T0316 188 :LSTAKKK 1eft 210 :IPTPVRD T0316 195 :DSTGICFIG 1eft 218 :DKPFLMPVE T0316 221 :RMMT 1eft 227 :DVFT T0316 226 :DGR 1eft 252 :EVE T0316 231 :GEHAGLMYYTIGQRGGL 1eft 257 :GLAPETRKTVVTGVEMH T0316 249 :I 1eft 277 :L T0316 252 :QHGGDNA 1eft 278 :QEGIAGD T0316 261 :FVV 1eft 288 :LLL T0316 264 :GKDLSKNILYVGQGFY 1eft 295 :REEVERGQVLAKPGSI T0316 300 :PEEFTLECTA 1eft 311 :TPHTKFEASV T0316 310 :KFRYRQPDSKVTVHVKGE 1eft 341 :QFYFRTTDVTGVVRLPQG T0316 328 :KTEVIFAE 1eft 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGL 1eft 377 :PVALEEGLRFAIREGGRTVGAGV T0316 362 :N 1eft 402 :K Number of specific fragments extracted= 25 number of extra gaps= 5 total=411 Number of alignments=28 # 1eft read from 1eft/merged-good-all-a2m # found chain 1eft in template set Warning: unaligning (T0316)T139 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)G287 Warning: unaligning (T0316)V140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)G287 Warning: unaligning (T0316)I360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)T401 Warning: unaligning (T0316)D361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)T401 T0316 6 :KTRVVVGMS 1eft 99 :MDGAILVVS T0316 19 :SSVTALLLKEQGYD 1eft 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1eft 131 :IVVFMN T0316 46 :ENGVCTATEDY 1eft 137 :KVDMVDDPELL T0316 57 :KDVVAVADQIGIP 1eft 152 :MEVRDLLNQYEFP T0316 70 :YYSVNFE 1eft 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1eft 175 :ALLALEEMHK T0316 94 :GRTPNPD 1eft 186 :PKTKRGE T0316 104 :NKEI 1eft 193 :NEWV T0316 108 :KFKAFLDYAITL 1eft 198 :KIWELLDAIDEY T0316 132 :VARD 1eft 213 :PVRD T0316 141 :HMLRGVDNGK 1eft 288 :LLLRGVSREE T0316 168 :MF 1eft 298 :VE T0316 234 :AGLMYYTIGQRGGL 1eft 300 :RGQVLAKPGSITPH T0316 266 :DLSKNILYVGQG 1eft 314 :TKFEASVYVLKK T0316 297 :REMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1eft 328 :GGRHTGFFSGYRPQFYFRTTDVTGVVRLPQG T0316 328 :KTEVIFAEPQR 1eft 369 :TFTVELIKPVA T0316 340 :ITPGQAVVFYDGEECLGGGL 1eft 380 :LEEGLRFAIREGGRTVGAGV T0316 362 :NAY 1eft 402 :KIL Number of specific fragments extracted= 19 number of extra gaps= 2 total=430 Number of alignments=29 # 1eft read from 1eft/merged-good-all-a2m # found chain 1eft in template set Warning: unaligning (T0316)D135 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)T232 Warning: unaligning (T0316)E136 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)T232 Warning: unaligning (T0316)F201 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)V256 Warning: unaligning (T0316)I202 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)V256 Warning: unaligning (T0316)R244 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)K275 Warning: unaligning (T0316)G245 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)K275 Warning: unaligning (T0316)W260 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)G287 Warning: unaligning (T0316)F261 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)G287 Warning: unaligning (T0316)I360 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1eft)T401 Warning: unaligning (T0316)D361 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1eft)T401 T0316 7 :TRVVVGMS 1eft 100 :DGAILVVS T0316 18 :DSSVTALLLKEQGYDVIGIFMKNWDDTDENGV 1eft 115 :QTREHILLARQVGVPYIVVFMNKVDMVDDPEL T0316 52 :ATEDYKDVVAVADQIGIP 1eft 147 :LDLVEMEVRDLLNQYEFP T0316 70 :YYSVN 1eft 170 :VIRGS T0316 84 :FEYFLAEYRA 1eft 175 :ALLALEEMHK T0316 94 :GRTP 1eft 186 :PKTK T0316 104 :N 1eft 193 :N T0316 108 :KFKAFLDYAIT 1eft 198 :KIWELLDAIDE T0316 129 :YARVAR 1eft 225 :VEDVFT T0316 137 :DGTVHMLRGVDNGK 1eft 233 :GRGTVATGRIERGK T0316 193 :KKDSTGIC 1eft 247 :VKVGDEVE T0316 203 :GE 1eft 257 :GL T0316 225 :VDGRDMGEHAGLMY 1eft 259 :APETRKTVVTGVEM T0316 246 :GLGIGG 1eft 276 :TLQEGI T0316 256 :DNAP 1eft 282 :AGDN T0316 262 :VV 1eft 288 :LL T0316 264 :GKDLSKNILYVGQGFYHD 1eft 295 :REEVERGQVLAKPGSITP T0316 285 :STS 1eft 313 :HTK T0316 288 :LEASQVHFTREMPEEFTL 1eft 323 :LKKEEGGRHTGFFSGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 1eft 341 :QFYFRTTDVTGVVRLPQGV T0316 329 :TEVIFAEPQ 1eft 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGL 1eft 379 :ALEEGLRFAIREGGRTVGAGV T0316 362 :NAY 1eft 402 :KIL Number of specific fragments extracted= 23 number of extra gaps= 5 total=453 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y0pA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y0pA expands to /projects/compbio/data/pdb/1y0p.pdb.gz 1y0pA:# T0316 read from 1y0pA/merged-good-all-a2m # 1y0pA read from 1y0pA/merged-good-all-a2m # adding 1y0pA to template set # found chain 1y0pA in template set Warning: unaligning (T0316)V33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)I153 Warning: unaligning (T0316)I34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0pA)I153 Warning: unaligning (T0316)V49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)G162 T0316 7 :TR 1y0pA 125 :DT T0316 9 :VVVGMSGGV 1y0pA 129 :VVVVGSGGA T0316 19 :SSVTALLLKEQGYD 1y0pA 138 :GFSAAISATDSGAK T0316 35 :GIFMKNW 1y0pA 154 :LIEKEPV T0316 52 :ATEDYKDVVAVADQI 1y0pA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1y0pA 202 :NI T0316 76 :EKEYWDRVFEYFL 1y0pA 205 :DPALVKVLSSHSK T0316 89 :AEYRAGRTPNPD 1y0pA 221 :DWMTAMGADLTD T0316 101 :VMCNKEI 1y0pA 251 :AGVGAHV T0316 109 :FKAFLDYAITLGAD 1y0pA 258 :VQVLYDNAVKRNID T0316 123 :YVATGH 1y0pA 308 :AVILAT T0316 143 :LRGV 1y0pA 438 :LGVA T0316 147 :DNGKDQTY 1y0pA 445 :DSLVKLGK T0316 156 :LSQLSQEQLQKTM 1y0pA 453 :MEGIDGKALTETV T0316 177 :PEVRRLAEEAGLSTAKKKD 1y0pA 466 :ARYNSLVSSGKDTDFERPN T0316 227 :GRDMGEHAGLMYYTIGQRGGLGIGG 1y0pA 485 :LPRALNEGNYYAIEVTPGVHHTMGG T0316 272 :LYVG 1y0pA 510 :VMID T0316 343 :GQAVVFYDGEECL 1y0pA 514 :TKAEVMNAKKQVI Number of specific fragments extracted= 18 number of extra gaps= 2 total=471 Number of alignments=31 # 1y0pA read from 1y0pA/merged-good-all-a2m # found chain 1y0pA in template set Warning: unaligning (T0316)V33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)I153 Warning: unaligning (T0316)I34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0pA)I153 Warning: unaligning (T0316)W41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)G162 Warning: unaligning (T0316)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0pA)G162 T0316 6 :KTR 1y0pA 124 :HDT T0316 9 :VVVGMSGGV 1y0pA 129 :VVVVGSGGA T0316 19 :SSVTALLLKEQGYD 1y0pA 138 :GFSAAISATDSGAK T0316 35 :GIFM 1y0pA 154 :LIEK T0316 39 :KN 1y0pA 159 :PV T0316 43 :DTD 1y0pA 163 :GNA T0316 50 :C 1y0pA 184 :K T0316 52 :ATEDYKDVVAVADQI 1y0pA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1y0pA 202 :NI T0316 75 :FEKEYWDRVFEYFLA 1y0pA 204 :NDPALVKVLSSHSKD T0316 90 :EYRAGRTPNPD 1y0pA 222 :WMTAMGADLTD T0316 101 :VMCNKEI 1y0pA 251 :AGVGAHV T0316 109 :FKAFLDYAITLGADY 1y0pA 258 :VQVLYDNAVKRNIDL T0316 139 :TVH 1y0pA 442 :PTA T0316 146 :VDNGK 1y0pA 445 :DSLVK T0316 153 :TYFLS 1y0pA 450 :LGKME T0316 173 :HLEKPEVRRLAEEA 1y0pA 455 :GIDGKALTETVARY T0316 291 :SQVHFTREMPEEF 1y0pA 469 :NSLVSSGKDTDFE T0316 333 :FAEPQRAITPGQAVV 1y0pA 482 :RPNLPRALNEGNYYA T0316 348 :FYDGEEC 1y0pA 498 :EVTPGVH T0316 355 :LGGGLIDN 1y0pA 507 :MGGVMIDT T0316 363 :AYRDGQVCQY 1y0pA 519 :MNAKKQVIPG Number of specific fragments extracted= 22 number of extra gaps= 2 total=493 Number of alignments=32 # 1y0pA read from 1y0pA/merged-good-all-a2m # found chain 1y0pA in template set Warning: unaligning (T0316)V33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)I153 Warning: unaligning (T0316)I34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0pA)I153 Warning: unaligning (T0316)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0pA)G162 T0316 3 :DNSKTRVVVGMSGGVD 1y0pA 123 :PHDTVDVVVVGSGGAG T0316 20 :SVTALLLKEQGYD 1y0pA 139 :FSAAISATDSGAK T0316 35 :GIFMKNW 1y0pA 154 :LIEKEPV T0316 47 :NGVCTATEDYKDVVAVADQ 1y0pA 184 :KITDSPELMFEDTMKGGQN T0316 74 :NFEKEYWDRVFEYFL 1y0pA 203 :INDPALVKVLSSHSK T0316 89 :AEYRAGRTPNPDVM 1y0pA 221 :DWMTAMGADLTDVG T0316 109 :FKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYF 1y0pA 258 :VQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV T0316 156 :LSQLSQEQLQKTMFPLGHLE 1y0pA 315 :GFAKNNERVAKLDPSLKGFI T0316 178 :EVRRLAEEAGL 1y0pA 344 :DGLDVAENAGG T0316 221 :RMMTVD 1y0pA 355 :ALKDMQ T0316 230 :MGEHA 1y0pA 362 :IQAHP Number of specific fragments extracted= 11 number of extra gaps= 2 total=504 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2blnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2blnA expands to /projects/compbio/data/pdb/2bln.pdb.gz 2blnA:Skipped atom 130, because occupancy 0.5 <= existing 0.500 in 2blnA Skipped atom 132, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 134, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 497, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 499, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 501, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 503, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 505, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 507, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 509, because occupancy 0.250 <= existing 0.750 in 2blnA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 739, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1304, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1306, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1308, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1310, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1312, because occupancy 0.400 <= existing 0.600 in 2blnA Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1671, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1712, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 1714, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2008, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2198, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2200, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2202, because occupancy 0.500 <= existing 0.500 in 2blnA Skipped atom 2204, because occupancy 0.500 <= existing 0.500 in 2blnA # T0316 read from 2blnA/merged-good-all-a2m # 2blnA read from 2blnA/merged-good-all-a2m # adding 2blnA to template set # found chain 2blnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (2blnA)M1 Warning: unaligning (T0316)D42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2blnA)F41 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2blnA)F41 T0316 8 :RVVVGM 2blnA 2 :KTVVFA T0316 19 :SSVTALLLKEQGYDVIGIFM 2blnA 12 :GCLGIEALLAAGYEISAIFT T0316 40 :NW 2blnA 32 :HT T0316 50 :CTA 2blnA 42 :YGS T0316 59 :VVAVADQIGIPYYSVN 2blnA 45 :VARLAAERGIPVYAPD T0316 75 :F 2blnA 62 :V T0316 103 :CNKEI 2blnA 63 :NHPLW T0316 113 :LDYAITLGADYVATGHYA 2blnA 68 :VERIAQLSPDVIFSFYYR T0316 134 :RDEDGT 2blnA 86 :HLIYDE T0316 149 :GKDQTYFLSQLSQEQLQKTM 2blnA 154 :PDDIAITLHHKLCHAARQLL T0316 177 :PEVRRLAEEAGLSTAKKKDSTGICFIG 2blnA 174 :EQTLPAIKHGNILEIAQRENEATCFGR T0316 204 :EKNF 2blnA 203 :PDDS T0316 208 :KNFLSNYLPAQPGRMMTVDGRD 2blnA 218 :HNMVRAVADPWPGAFSYVGNQK T0316 239 :YTIGQRGGLGIGGQHGGDNA 2blnA 240 :FTVWSSRVHPHASKAQPGSV T0316 259 :PWFVVGKDL 2blnA 264 :PLLIACGDG T0316 308 :TAKFR 2blnA 273 :ALEIV T0316 321 :TVHVKG 2blnA 278 :TGQAGD Number of specific fragments extracted= 17 number of extra gaps= 0 total=521 Number of alignments=34 # 2blnA read from 2blnA/merged-good-all-a2m # found chain 2blnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (2blnA)M1 Warning: unaligning (T0316)E46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2blnA)F41 Warning: unaligning (T0316)D55 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2blnA)F41 Warning: unaligning (T0316)E204 because of BadResidue code BAD_PEPTIDE in next template residue (2blnA)T202 Warning: unaligning (T0316)K205 because of BadResidue code BAD_PEPTIDE at template residue (2blnA)T202 T0316 8 :RVVVGM 2blnA 2 :KTVVFA T0316 19 :SSVTALLLKEQGYDVIGIFM 2blnA 12 :GCLGIEALLAAGYEISAIFT T0316 44 :TD 2blnA 32 :HT T0316 56 :YKDVVAVADQIGIPYY 2blnA 42 :YGSVARLAAERGIPVY T0316 75 :FE 2blnA 58 :AP T0316 94 :GRTP 2blnA 60 :DNVN T0316 104 :NKEI 2blnA 64 :HPLW T0316 113 :LDYAITLGADYVATGHYAR 2blnA 68 :VERIAQLSPDVIFSFYYRH T0316 137 :DG 2blnA 87 :LI T0316 139 :TVHMLRGVDNGKDQTYFLSQLSQEQLQKTM 2blnA 144 :IVAQLRIAIAPDDIAITLHHKLCHAARQLL T0316 177 :PEVRRLAEEAGLSTAKKKDSTGICFIG 2blnA 174 :EQTLPAIKHGNILEIAQRENEATCFGR T0316 206 :NFKNFLSNYLP 2blnA 203 :PDDSFLEWHKP T0316 220 :GR 2blnA 227 :PW T0316 227 :GRDMGEHAGLMYYTIGQ 2blnA 229 :PGAFSYVGNQKFTVWSS T0316 248 :GI 2blnA 246 :RV T0316 251 :GQHGGDNAPWFVVGKD 2blnA 248 :HPHASKAQPGSVISVA T0316 270 :NILY 2blnA 264 :PLLI T0316 339 :AITPGQAVV 2blnA 268 :ACGDGALEI T0316 348 :FYD 2blnA 278 :TGQ T0316 351 :GE 2blnA 282 :GD Number of specific fragments extracted= 20 number of extra gaps= 1 total=541 Number of alignments=35 # 2blnA read from 2blnA/merged-good-all-a2m # found chain 2blnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (2blnA)M1 Warning: unaligning (T0316)W41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2blnA)F41 Warning: unaligning (T0316)G48 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2blnA)F41 Warning: unaligning (T0316)E204 because of BadResidue code BAD_PEPTIDE in next template residue (2blnA)T202 Warning: unaligning (T0316)K205 because of BadResidue code BAD_PEPTIDE at template residue (2blnA)T202 T0316 8 :RVVVGM 2blnA 2 :KTVVFA T0316 18 :DSSVTALLLKEQGYDVIGIFMKN 2blnA 11 :MGCLGIEALLAAGYEISAIFTHT T0316 49 :VC 2blnA 42 :YG T0316 58 :DVVAVADQIGIPYYS 2blnA 44 :SVARLAAERGIPVYA T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYAR 2blnA 59 :PDNVNHPLWVERIAQLSPDVIFSFYYRH T0316 138 :GTVHMLRGVDNGKDQTYFLSQLSQEQLQKTM 2blnA 143 :AIVAQLRIAIAPDDIAITLHHKLCHAARQLL T0316 177 :PEVRRLAEEAGLSTAKKKDSTGICFIG 2blnA 174 :EQTLPAIKHGNILEIAQRENEATCFGR T0316 206 :N 2blnA 203 :P T0316 207 :FKNFLSNYLPAQPGRMMTVDGRD 2blnA 217 :LHNMVRAVADPWPGAFSYVGNQK T0316 239 :YTIGQRGGLGIGG 2blnA 240 :FTVWSSRVHPHAS T0316 256 :DNAPWFVVGK 2blnA 253 :KAQPGSVISV T0316 269 :KNILYVGQGF 2blnA 263 :APLLIACGDG T0316 308 :TAKFR 2blnA 273 :ALEIV T0316 321 :TVHVKGEKT 2blnA 278 :TGQAGDGIT Number of specific fragments extracted= 14 number of extra gaps= 1 total=555 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m1zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m1zA expands to /projects/compbio/data/pdb/1m1z.pdb.gz 1m1zA:# T0316 read from 1m1zA/merged-good-all-a2m # 1m1zA read from 1m1zA/merged-good-all-a2m # adding 1m1zA to template set # found chain 1m1zA in template set Warning: unaligning (T0316)G149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1m1zA)A473 Warning: unaligning (T0316)F155 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1m1zA)A473 T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQ 1m1zA 239 :TPGDTPLVVLSGGIDSSGVAACAHRA T0316 31 :YDVIGIFM 1m1zA 266 :GELDTVSM T0316 46 :ENGVCTATEDYKDV 1m1zA 274 :GTDTSNEFREARAV T0316 63 :ADQIGIPYYSVNFE 1m1zA 288 :VDHLRTRHREITIP T0316 88 :LAEYRA 1m1zA 302 :TTELLA T0316 100 :D 1m1zA 308 :Q T0316 101 :VMCNKE 1m1zA 317 :ESVDPD T0316 108 :KFKAFLDYAITL 1m1zA 323 :IIEYLLPLTALY T0316 120 :GADYVATG 1m1zA 340 :PERRILTG T0316 128 :H 1m1zA 358 :H T0316 130 :A 1m1zA 359 :R T0316 134 :RDEDGT 1m1zA 360 :EDRLPA T0316 140 :VHMLRGVDN 1m1zA 458 :RLLLDHGVA T0316 156 :LSQLSQEQLQKTM 1m1zA 474 :KRQVVRELFDLTV T0316 169 :FPLGHLEKPEVR 1m1zA 490 :RHPSEVDTDDVV Number of specific fragments extracted= 15 number of extra gaps= 0 total=570 Number of alignments=37 # 1m1zA read from 1m1zA/merged-good-all-a2m # found chain 1m1zA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKN 1m1zA 240 :PGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGT T0316 46 :E 1m1zA 276 :D T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1m1zA 277 :TSNEFREARAVVDHLRTRHREITIP T0316 77 :KEYWDRVFEYFL 1m1zA 303 :TELLAQLPYAVW T0316 101 :VMCNKEI 1m1zA 317 :ESVDPDI T0316 109 :FKAFLDYAITL 1m1zA 324 :IEYLLPLTALY T0316 120 :GADYVATGHYARVARDE 1m1zA 340 :PERRILTGYGADIPLGG T0316 147 :DNGKDQTYFLSQLSQEQLQK 1m1zA 357 :MHREDRLPALDTVLAHDMAT Number of specific fragments extracted= 8 number of extra gaps= 0 total=578 Number of alignments=38 # 1m1zA read from 1m1zA/merged-good-all-a2m # found chain 1m1zA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD 1m1zA 240 :PGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDTS T0316 54 :EDYKDVVAVADQIGIPYYSVNF 1m1zA 279 :NEFREARAVVDHLRTRHREITI T0316 76 :EKEYWDRVFEYF 1m1zA 302 :TTELLAQLPYAV T0316 92 :RAGRTPNP 1m1zA 314 :WASESVDP T0316 106 :EI 1m1zA 322 :DI T0316 109 :FKAFLDYAIT 1m1zA 324 :IEYLLPLTAL T0316 119 :LGADYVATGHYARV 1m1zA 339 :GPERRILTGYGADI T0316 166 :KTMFPLGHLEKPEVRRLAEEA 1m1zA 353 :PLGGMHREDRLPALDTVLAHD Number of specific fragments extracted= 8 number of extra gaps= 0 total=586 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1exmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1exmA/merged-good-all-a2m # 1exmA read from 1exmA/merged-good-all-a2m # found chain 1exmA in training set T0316 7 :TRVVVGMS 1exmA 100 :DGAILVVS T0316 19 :SSVTALLLKEQGYD 1exmA 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1exmA 131 :IVVFMN T0316 46 :ENGVCTATEDYK 1exmA 137 :KVDMVDDPELLD T0316 58 :DVVAVADQI 1exmA 153 :EVRDLLNQY T0316 67 :GIPYYSVNF 1exmA 167 :EVPVIRGSA T0316 85 :EYFLAEYRA 1exmA 176 :LLALEQMHR T0316 94 :GRTPNPD 1exmA 186 :PKTRRGE T0316 104 :NKEI 1exmA 193 :NEWV T0316 108 :KFKAFLDYAITL 1exmA 198 :KIWELLDAIDEY T0316 131 :RVARDEDGTV 1exmA 212 :TPVRDVDKPF T0316 191 :AKKKDSTGICFIGEKN 1exmA 228 :VFTITGRGTVATGRIE T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGK 1exmA 252 :EVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLR T0316 266 :DLSKNILYVGQGFY 1exmA 297 :EVERGQVLAKPGSI T0316 300 :PEEFTLECTA 1exmA 311 :TPHTKFEASV T0316 310 :KFRYRQPDSKVTVHVKGE 1exmA 341 :QFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAE 1exmA 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 1exmA 377 :PVALEEGLRFAIREGGRTVGAGVVT Number of specific fragments extracted= 18 number of extra gaps= 0 total=604 Number of alignments=40 # 1exmA read from 1exmA/merged-good-all-a2m # found chain 1exmA in training set T0316 7 :TRVVVGMS 1exmA 100 :DGAILVVS T0316 19 :SSVTALLLKEQGYD 1exmA 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1exmA 131 :IVVFMN T0316 46 :ENGVCTATEDY 1exmA 137 :KVDMVDDPELL T0316 57 :KDVVAVADQIGIP 1exmA 152 :MEVRDLLNQYEFP T0316 70 :YYSVNFE 1exmA 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1exmA 175 :ALLALEQMHR T0316 94 :GRTPNPD 1exmA 186 :PKTRRGE T0316 104 :NKEI 1exmA 193 :NEWV T0316 108 :KFKAFLDYAITL 1exmA 198 :KIWELLDAIDEY T0316 137 :DG 1exmA 212 :TP T0316 198 :GICFIGEKNFK 1exmA 235 :GTVATGRIERG T0316 229 :DM 1exmA 246 :KV T0316 233 :HAGLMYYTIGQRGGL 1exmA 248 :KVGDEVEIVGLAPET T0316 248 :GIGGQHGG 1exmA 268 :TGVEMHRK T0316 256 :DNAPWFVVGKDLSK 1exmA 282 :AGDNVGVLLRGVSR T0316 270 :NILYVGQG 1exmA 301 :GQVLAKPG T0316 278 :FYHDS 1exmA 323 :LKKEE T0316 297 :REMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1exmA 328 :GGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAEPQR 1exmA 369 :TFTVELIKPVA T0316 340 :ITPGQAVVFYDGEECLGGGLIDNAY 1exmA 380 :LEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 21 number of extra gaps= 0 total=625 Number of alignments=41 # 1exmA read from 1exmA/merged-good-all-a2m # found chain 1exmA in training set T0316 7 :TRVVVGMS 1exmA 100 :DGAILVVS T0316 18 :DSSVTALLLKEQGYDVIGIFMKNWDDTDEN 1exmA 115 :QTREHILLARQVGVPYIVVFMNKVDMVDDP T0316 54 :EDY 1exmA 145 :ELL T0316 57 :KDVVAVADQIGIP 1exmA 152 :MEVRDLLNQYEFP T0316 70 :YYSVNF 1exmA 170 :VIRGSA T0316 77 :K 1exmA 176 :L T0316 82 :RVFEYFLA 1exmA 177 :LALEQMHR T0316 98 :NPDVMCNKEI 1exmA 185 :NPKTRRGENE T0316 108 :KFKAFLDYAIT 1exmA 198 :KIWELLDAIDE T0316 119 :LGAD 1exmA 217 :VDKP T0316 129 :YARVARDEDGTVHMLRGVDNGK 1exmA 225 :VEDVFTITGRGTVATGRIERGK T0316 193 :KKDSTGICFIGE 1exmA 247 :VKVGDEVEIVGL T0316 214 :YLPAQPGRMMT 1exmA 259 :APETRKTVVTG T0316 236 :LMY 1exmA 270 :VEM T0316 243 :QRGGLGIGG 1exmA 273 :HRKTLQEGI T0316 256 :DNAPWFVV 1exmA 282 :AGDNVGVL T0316 264 :GKDLSKNILYVGQGFYHD 1exmA 295 :REEVERGQVLAKPGSITP T0316 285 :STS 1exmA 313 :HTK T0316 288 :LEASQVHFTREMPEEFTLE 1exmA 323 :LKKEEGGRHTGFFSGYRPQ T0316 311 :FRYRQPDSKVTVHVKGEK 1exmA 342 :FYFRTTDVTGVVQLPPGV T0316 329 :TEVIFAEPQ 1exmA 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 1exmA 379 :ALEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 22 number of extra gaps= 0 total=647 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jmvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jmvA expands to /projects/compbio/data/pdb/1jmv.pdb.gz 1jmvA:# T0316 read from 1jmvA/merged-good-all-a2m # 1jmvA read from 1jmvA/merged-good-all-a2m # adding 1jmvA to template set # found chain 1jmvA in template set T0316 7 :TRVVVGM 1jmvA 3 :KHILVAV T0316 19 :SSVTALLL 1jmvA 15 :SPILLKKA T0316 27 :KEQGYDVIGIFMKNWDDTDENGV 1jmvA 27 :KRHDAKLSIIHVDVNFSDLYTGL T0316 50 :CTATEDYKDVVAVADQIGIPY 1jmvA 60 :RISTETQKALLDLAESVDYPI T0316 71 :YSVNFE 1jmvA 84 :LSGSGD T0316 108 :KFKAFLDYAITLGADYVATGHYA 1jmvA 90 :LGQVLSDAIEQYDVDLLVTGHHQ T0316 134 :RDEDGTVHM 1jmvA 113 :DFWSKLMSS T0316 143 :LRGV 1jmvA 126 :MNTI Number of specific fragments extracted= 8 number of extra gaps= 0 total=655 Number of alignments=43 # 1jmvA read from 1jmvA/merged-good-all-a2m # found chain 1jmvA in template set T0316 7 :TRVVVGM 1jmvA 3 :KHILVAV T0316 19 :SSVTAL 1jmvA 15 :SPILLK T0316 25 :LLKEQGYDVIGIFMKNWDDTDENGV 1jmvA 25 :IAKRHDAKLSIIHVDVNFSDLYTGL T0316 50 :CTATEDYKDVVAVADQIGIPY 1jmvA 60 :RISTETQKALLDLAESVDYPI T0316 71 :YSVNFE 1jmvA 84 :LSGSGD T0316 108 :KFKAFLDYAITLGADYVATGHYAR 1jmvA 90 :LGQVLSDAIEQYDVDLLVTGHHQD Number of specific fragments extracted= 6 number of extra gaps= 0 total=661 Number of alignments=44 # 1jmvA read from 1jmvA/merged-good-all-a2m # found chain 1jmvA in template set T0316 7 :TRVVVGM 1jmvA 3 :KHILVAV T0316 19 :SS 1jmvA 15 :SP T0316 21 :VTALLLKEQGYDVIGIFMKNWDDT 1jmvA 21 :KAVGIAKRHDAKLSIIHVDVNFSD T0316 47 :NG 1jmvA 58 :QD T0316 50 :CTATEDYKDVVAVADQIGIP 1jmvA 60 :RISTETQKALLDLAESVDYP T0316 70 :YYSVNFE 1jmvA 83 :KLSGSGD T0316 108 :KFKAFLDYAITLGADYVATGHY 1jmvA 90 :LGQVLSDAIEQYDVDLLVTGHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=668 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bw0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bw0A expands to /projects/compbio/data/pdb/2bw0.pdb.gz 2bw0A:# T0316 read from 2bw0A/merged-good-all-a2m # 2bw0A read from 2bw0A/merged-good-all-a2m # adding 2bw0A to template set # found chain 2bw0A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (2bw0A)Q-2 Warning: unaligning (T0316)K6 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2bw0A)M1 Warning: unaligning (T0316)T7 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2bw0A)M1 Warning: unaligning (T0316)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2bw0A)D36 Warning: unaligning (T0316)D43 because of BadResidue code BAD_PEPTIDE at template residue (2bw0A)D36 Warning: unaligning (T0316)G187 because of BadResidue code BAD_PEPTIDE in next template residue (2bw0A)K229 Warning: unaligning (T0316)A217 because of BadResidue code BAD_PEPTIDE at template residue (2bw0A)K229 T0316 8 :RVVVG 2bw0A 2 :KIAVI T0316 19 :SSVTALLLKEQGYDVIGIFMKNW 2bw0A 12 :GQEVYCHLRKEGHEVVGVFTVPD T0316 44 :TD 2bw0A 37 :GK T0316 54 :E 2bw0A 40 :D T0316 58 :DVVAVADQIGIPYYSVN 2bw0A 41 :PLGLEAEKDGVPVFKYS T0316 75 :FE 2bw0A 59 :WR T0316 92 :RAGR 2bw0A 61 :AKGQ T0316 103 :CNKEI 2bw0A 65 :ALPDV T0316 113 :LDYAITLGADYVATGHYA 2bw0A 70 :VAKYQALGAELNVLPFCS T0316 134 :RDEDGT 2bw0A 88 :QFIPME T0316 140 :VHM 2bw0A 181 :RLI T0316 143 :LR 2bw0A 188 :AP T0316 145 :GVDNGKDQT 2bw0A 191 :LPQPEEGAT T0316 155 :FLSQLSQEQLQ 2bw0A 200 :YEGIQKKETAK T0316 172 :GHLEKPEVRRLAEEA 2bw0A 213 :WDQPAEAIHNWIRGN T0316 218 :QPGRMMTVDGR 2bw0A 230 :VPGAWTEACEQ T0316 235 :GLMYYTIG 2bw0A 241 :KLTFFNST T0316 243 :QRGGLGIGGQH 2bw0A 257 :EGDALPIPGAH T0316 336 :PQRAITPGQAVVFYDGEECLGG 2bw0A 268 :RPGVVTKAGLILFGNDDKMLLV Number of specific fragments extracted= 19 number of extra gaps= 2 total=687 Number of alignments=46 # 2bw0A read from 2bw0A/merged-good-all-a2m # found chain 2bw0A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (2bw0A)Q-2 Warning: unaligning (T0316)K6 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2bw0A)M1 Warning: unaligning (T0316)T7 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2bw0A)M1 Warning: unaligning (T0316)N47 because of BadResidue code BAD_PEPTIDE in next template residue (2bw0A)D36 Warning: unaligning (T0316)G48 because of BadResidue code BAD_PEPTIDE at template residue (2bw0A)D36 T0316 8 :RVVVG 2bw0A 2 :KIAVI T0316 19 :SSVTALLLKEQGYDVIGIFM 2bw0A 12 :GQEVYCHLRKEGHEVVGVFT T0316 44 :TDE 2bw0A 32 :VPD T0316 49 :VC 2bw0A 37 :GK T0316 56 :YKDVVAVADQIGIPYYSVN 2bw0A 39 :ADPLGLEAEKDGVPVFKYS T0316 94 :GR 2bw0A 62 :KG T0316 102 :MCNKEI 2bw0A 64 :QALPDV T0316 113 :LDYAITLGADYVATGHYAR 2bw0A 70 :VAKYQALGAELNVLPFCSQ T0316 137 :D 2bw0A 89 :F T0316 139 :TVHM 2bw0A 148 :LQKE T0316 144 :RGVDNGK 2bw0A 152 :CEVLPDD T0316 155 :FLSQLSQEQL 2bw0A 159 :TVSTLYNRFL T0316 176 :KPEVRRLAEEA 2bw0A 169 :FPEGIKGMVQA T0316 187 :G 2bw0A 186 :G T0316 188 :LSTAKKKDSTGI 2bw0A 188 :APRLPQPEEGAT T0316 202 :IGEKNFKNFLSNYLPA 2bw0A 200 :YEGIQKKETAKINWDQ T0316 220 :GRMMTVDGRDMGEHA 2bw0A 232 :GAWTEACEQKLTFFN T0316 240 :TIGQRGGLGIGGQHGG 2bw0A 251 :TSGLVPEGDALPIPGA T0316 335 :EPQRAITPGQAVVFYDGEECLGGGLID 2bw0A 267 :HRPGVVTKAGLILFGNDDKMLLVKNIQ T0316 364 :YRDGQVCQ 2bw0A 294 :LEDGKMIL Number of specific fragments extracted= 20 number of extra gaps= 1 total=707 Number of alignments=47 # 2bw0A read from 2bw0A/merged-good-all-a2m # found chain 2bw0A in template set Warning: unaligning (T0316)S5 because first residue in template chain is (2bw0A)Q-2 Warning: unaligning (T0316)K6 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2bw0A)M1 Warning: unaligning (T0316)T7 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2bw0A)M1 Warning: unaligning (T0316)D42 because of BadResidue code BAD_PEPTIDE in next template residue (2bw0A)D36 Warning: unaligning (T0316)D43 because of BadResidue code BAD_PEPTIDE at template residue (2bw0A)D36 Warning: unaligning (T0316)A217 because of BadResidue code BAD_PEPTIDE at template residue (2bw0A)K229 T0316 8 :RVVVG 2bw0A 2 :KIAVI T0316 18 :DSSVTALLLKEQGYDVIGIFMKNW 2bw0A 11 :FGQEVYCHLRKEGHEVVGVFTVPD T0316 44 :TDEN 2bw0A 37 :GKAD T0316 58 :DVVAVADQIGIPYYSVNF 2bw0A 41 :PLGLEAEKDGVPVFKYSR T0316 104 :NKEIKFKAFLDYAITLGADYVATGHY 2bw0A 61 :AKGQALPDVVAKYQALGAELNVLPFC T0316 138 :GTVHMLRGVDNGKDQTYFLSQ 2bw0A 145 :DLLLQKECEVLPDDTVSTLYN T0316 166 :KTMF 2bw0A 166 :RFLF T0316 177 :PEVRRLAEEA 2bw0A 170 :PEGIKGMVQA T0316 188 :LSTAKKKDST 2bw0A 201 :EGIQKKETAK T0316 202 :I 2bw0A 211 :I T0316 203 :GEKNFKNFLSNYLP 2bw0A 213 :WDQPAEAIHNWIRG T0316 218 :QPGRMMTVDGRDMGEHAG 2bw0A 230 :VPGAWTEACEQKLTFFNS T0316 240 :TI 2bw0A 248 :TL T0316 243 :QRGGLGIGGQH 2bw0A 250 :NTSGLVPEGDA T0316 254 :GGDNAPWFVV 2bw0A 264 :PGAHRPGVVT T0316 269 :KNILYVGQGFYH 2bw0A 274 :KAGLILFGNDDK T0316 306 :ECTAKF 2bw0A 286 :MLLVKN T0316 322 :VHVKGEKTE 2bw0A 292 :IQLEDGKMI Number of specific fragments extracted= 18 number of extra gaps= 2 total=725 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ha3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ha3A expands to /projects/compbio/data/pdb/1ha3.pdb.gz 1ha3A:Skipped atom 514, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 516, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 518, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 646, because occupancy 0.300 <= existing 0.700 in 1ha3A Skipped atom 648, because occupancy 0.300 <= existing 0.700 in 1ha3A Skipped atom 650, because occupancy 0.300 <= existing 0.700 in 1ha3A Skipped atom 652, because occupancy 0.300 <= existing 0.700 in 1ha3A Skipped atom 654, because occupancy 0.300 <= existing 0.700 in 1ha3A Skipped atom 792, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 794, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 796, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 832, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 834, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 836, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 838, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 979, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 981, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 983, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 985, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 2393, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 2395, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 3013, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 3015, because occupancy 0.500 <= existing 0.500 in 1ha3A Skipped atom 3017, because occupancy 0.500 <= existing 0.500 in 1ha3A # T0316 read from 1ha3A/merged-good-all-a2m # 1ha3A read from 1ha3A/merged-good-all-a2m # adding 1ha3A to template set # found chain 1ha3A in template set T0316 7 :TRVVVGMS 1ha3A 100 :DGAILVVS T0316 19 :SSVTALLLKEQGYD 1ha3A 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1ha3A 131 :IVVFMN T0316 46 :ENGVCTATEDYK 1ha3A 137 :KVDMVDDPELLD T0316 58 :DVVAVADQIGIP 1ha3A 153 :EVRDLLNQYEFP T0316 70 :YYSVNFE 1ha3A 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1ha3A 175 :ALLALEQMHR T0316 94 :GRTPNPD 1ha3A 186 :PKTRRGE T0316 104 :NKEI 1ha3A 193 :NEWV T0316 108 :KFKAFLDYAITL 1ha3A 198 :KIWELLDAIDEY T0316 131 :RVARDEDGT 1ha3A 212 :TPVRDVDKP T0316 167 :T 1ha3A 221 :F T0316 191 :AKKKDSTGICFIGEKN 1ha3A 228 :VFTITGRGTVATGRIE T0316 208 :KNFL 1ha3A 244 :RGKV T0316 218 :QPGRMMTV 1ha3A 248 :KVGDEVEI T0316 230 :MGEHAGLMYYTIGQRGG 1ha3A 256 :VGLAPETRKTVVTGVEM T0316 247 :LG 1ha3A 286 :VG T0316 249 :IGGQHGGDNAPWFVVGKD 1ha3A 290 :LRGVSREEVERGQVLAKP T0316 267 :L 1ha3A 309 :S T0316 268 :SKNILYVGQGFYHDSLMSTSLEASQV 1ha3A 314 :TKFEASVYVLKKEEGGRHTGFFSGYR T0316 309 :AKFRYRQPDSKVTVHVKGE 1ha3A 340 :PQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAE 1ha3A 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 1ha3A 377 :PVALEEGLRFAIREGGRTVGAGVVT Number of specific fragments extracted= 23 number of extra gaps= 0 total=748 Number of alignments=49 # 1ha3A read from 1ha3A/merged-good-all-a2m # found chain 1ha3A in template set T0316 6 :KTRVVVGMS 1ha3A 99 :MDGAILVVS T0316 19 :SSVTALLLKEQGYD 1ha3A 116 :TREHILLARQVGVP T0316 33 :VIGIFM 1ha3A 131 :IVVFMN T0316 46 :ENGVCTATEDY 1ha3A 137 :KVDMVDDPELL T0316 57 :KDVVAVADQIGIP 1ha3A 152 :MEVRDLLNQYEFP T0316 70 :YYSVNFE 1ha3A 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1ha3A 175 :ALLALEQMHR T0316 94 :GRTPNPD 1ha3A 186 :PKTRRGE T0316 104 :NKEI 1ha3A 193 :NEWV T0316 108 :KFKAFLDYAITL 1ha3A 198 :KIWELLDAIDEY T0316 135 :D 1ha3A 211 :P T0316 137 :DG 1ha3A 212 :TP T0316 234 :AGLMYYTIGQRGGLGIGGQ 1ha3A 249 :VGDEVEIVGLAPETRKTVV T0316 253 :HGG 1ha3A 277 :LQE T0316 256 :DNAPWFVVGK 1ha3A 282 :AGDNVGVLLR T0316 266 :DLSKNILYVGQG 1ha3A 297 :EVERGQVLAKPG T0316 298 :EMPEEF 1ha3A 323 :LKKEEG T0316 304 :TLECTAKFRYRQPDSKVTVHVKGE 1ha3A 335 :FSGYRPQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAEPQR 1ha3A 369 :TFTVELIKPVA T0316 340 :ITPGQAVVFYDGEECLGGGLIDNAY 1ha3A 380 :LEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 20 number of extra gaps= 0 total=768 Number of alignments=50 # 1ha3A read from 1ha3A/merged-good-all-a2m # found chain 1ha3A in template set T0316 7 :TRVVVGMSG 1ha3A 100 :DGAILVVSA T0316 18 :DSSVTALLLKEQGYDVIGIFMKNWDDTDENG 1ha3A 115 :QTREHILLARQVGVPYIVVFMNKVDMVDDPE T0316 51 :TATEDYKDVVAVADQIGIP 1ha3A 146 :LLDLVEMEVRDLLNQYEFP T0316 70 :YYSVNFE 1ha3A 170 :VIRGSAL T0316 82 :RVFEYFLA 1ha3A 177 :LALEQMHR T0316 98 :NPDVMCNKEI 1ha3A 185 :NPKTRRGENE T0316 108 :KFKAFLDYAIT 1ha3A 198 :KIWELLDAIDE T0316 119 :LGAD 1ha3A 217 :VDKP T0316 128 :HYARVARDEDGTVHMLRGVDNGK 1ha3A 224 :PVEDVFTITGRGTVATGRIERGK T0316 191 :AKKKD 1ha3A 247 :VKVGD T0316 198 :GICFIGE 1ha3A 252 :EVEIVGL T0316 217 :A 1ha3A 259 :A T0316 226 :DGRDMGEHAGLMY 1ha3A 260 :PETRKTVVTGVEM T0316 243 :QRGGLGIGG 1ha3A 273 :HRKTLQEGI T0316 256 :DNAPWFVVGKDLSK 1ha3A 282 :AGDNVGVLLRGVSR T0316 270 :NILYVGQGF 1ha3A 301 :GQVLAKPGS T0316 285 :STS 1ha3A 313 :HTK T0316 288 :LEASQVHFTREMPEEFTL 1ha3A 323 :LKKEEGGRHTGFFSGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 1ha3A 341 :QFYFRTTDVTGVVQLPPGV T0316 329 :TEVIFAEPQ 1ha3A 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 1ha3A 379 :ALEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 21 number of extra gaps= 0 total=789 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fmtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fmtA expands to /projects/compbio/data/pdb/1fmt.pdb.gz 1fmtA:# T0316 read from 1fmtA/merged-good-all-a2m # 1fmtA read from 1fmtA/merged-good-all-a2m # adding 1fmtA to template set # found chain 1fmtA in template set Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtA)L46 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1fmtA)L46 T0316 6 :KTRVVVGM 1fmtA 3 :SLRIIFAG T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1fmtA 15 :AARHLDALLSSGHNVVGVFTQPDR T0316 50 :CTA 1fmtA 47 :MPS T0316 58 :DVVAVADQIGIPYYS 1fmtA 50 :PVKVLAEEKGLPVFQ T0316 100 :DVMCNKE 1fmtA 65 :PVSLRPQ T0316 110 :KA 1fmtA 72 :EN T0316 113 :LDYAITLGADYVATGHYARVA 1fmtA 74 :QQLVAELQADVMVVVAYGLIL T0316 140 :VHM 1fmtA 184 :KQL T0316 143 :LRGVDN 1fmtA 188 :DGTAKP T0316 149 :GKDQTYFLSQLSQE 1fmtA 197 :DETLVTYAEKLSKE T0316 166 :KTMFP 1fmtA 211 :EARID T0316 172 :GHLEKPEVRRLAEEAG 1fmtA 216 :WSLSAAQLERCIRAFN T0316 195 :DSTGICFIG 1fmtA 232 :PWPMSWLEI T0316 219 :PGRM 1fmtA 241 :EGQP T0316 239 :YTIGQRGGLGIGGQH 1fmtA 245 :VKVWKASVIDTATNA T0316 300 :PEEFTL 1fmtA 260 :APGTIL T0316 323 :HVKGEKTEVIFAEP 1fmtA 266 :EANKQGIQVATGDG T0316 345 :AVVF 1fmtA 280 :ILNL Number of specific fragments extracted= 18 number of extra gaps= 0 total=807 Number of alignments=52 # 1fmtA read from 1fmtA/merged-good-all-a2m # found chain 1fmtA in template set Warning: unaligning (T0316)C50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtA)L46 T0316 6 :KTRVVVGM 1fmtA 3 :SLRIIFAG T0316 20 :SVTALLLKEQGYDVIGIFM 1fmtA 16 :ARHLDALLSSGHNVVGVFT T0316 46 :ENGV 1fmtA 35 :QPDR T0316 58 :DVVAVADQIGIPYYS 1fmtA 50 :PVKVLAEEKGLPVFQ T0316 100 :DVMCNKEI 1fmtA 65 :PVSLRPQE T0316 112 :FLDYAITLGADYVATGHY 1fmtA 73 :NQQLVAELQADVMVVVAY T0316 135 :D 1fmtA 91 :G T0316 137 :DG 1fmtA 92 :LI T0316 139 :TVHMLRGVDNGKDQTYFLSQLSQEQLQK 1fmtA 154 :LSCPITAEDTSGTLYDKLAELGPQGLIT T0316 172 :GHLEKPEVRRLAEEAG 1fmtA 216 :WSLSAAQLERCIRAFN T0316 197 :TGICFI 1fmtA 233 :WPMSWL T0316 232 :EHAGLMYYTI 1fmtA 239 :EIEGQPVKVW T0316 246 :GLGIGGQHGGDNAP 1fmtA 249 :KASVIDTATNAAPG T0316 321 :TVH 1fmtA 263 :TIL T0316 324 :VKGEKTEVIFAE 1fmtA 267 :ANKQGIQVATGD T0316 343 :GQAVV 1fmtA 279 :GILNL T0316 348 :FYD 1fmtA 285 :SLQ Number of specific fragments extracted= 17 number of extra gaps= 0 total=824 Number of alignments=53 # 1fmtA read from 1fmtA/merged-good-all-a2m # found chain 1fmtA in template set Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtA)L46 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1fmtA)L46 T0316 5 :SKTRVVVGMS 1fmtA 2 :ESLRIIFAGT T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1fmtA 15 :AARHLDALLSSGHNVVGVFTQPDR T0316 50 :CTA 1fmtA 47 :MPS T0316 58 :DVVAVADQIGIPYYS 1fmtA 50 :PVKVLAEEKGLPVFQ T0316 104 :NKEIKFKAFLDYAITLGADYVATGHY 1fmtA 65 :PVSLRPQENQQLVAELQADVMVVVAY T0316 138 :GTVHMLRGVDNGKDQTYFLS 1fmtA 149 :DMLYKLSCPITAEDTSGTLY T0316 162 :EQLQKTM 1fmtA 169 :DKLAELG T0316 176 :KPEVRRLAEEA 1fmtA 176 :PQGLITTLKQL T0316 188 :LSTAKK 1fmtA 201 :VTYAEK T0316 226 :DGRDMGEH 1fmtA 233 :WPMSWLEI T0316 256 :DNAPWFVVGKDLSK 1fmtA 241 :EGQPVKVWKASVID T0316 286 :TS 1fmtA 255 :TA T0316 297 :REMPEEFTLE 1fmtA 257 :TNAAPGTILE T0316 324 :VKGEKTEVIFAEPQRAI 1fmtA 267 :ANKQGIQVATGDGILNL Number of specific fragments extracted= 14 number of extra gaps= 0 total=838 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fmtB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fmtB expands to /projects/compbio/data/pdb/1fmt.pdb.gz 1fmtB:# T0316 read from 1fmtB/merged-good-all-a2m # 1fmtB read from 1fmtB/merged-good-all-a2m # adding 1fmtB to template set # found chain 1fmtB in template set Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtB)L46 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1fmtB)L46 T0316 6 :KTRVVVGM 1fmtB 3 :SLRIIFAG T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1fmtB 15 :AARHLDALLSSGHNVVGVFTQPDR T0316 50 :CTA 1fmtB 47 :MPS T0316 58 :DVVAVADQIGIPYYS 1fmtB 50 :PVKVLAEEKGLPVFQ T0316 100 :DVMCNKE 1fmtB 65 :PVSLRPQ T0316 110 :KA 1fmtB 72 :EN T0316 113 :LDYAITLGADYVATGHYARVAR 1fmtB 74 :QQLVAELQADVMVVVAYGLILP T0316 140 :VHM 1fmtB 184 :KQL T0316 143 :LRGVDN 1fmtB 188 :DGTAKP T0316 149 :GKDQTYFLSQLSQE 1fmtB 197 :DETLVTYAEKLSKE T0316 166 :KTMFPL 1fmtB 211 :EARIDW T0316 173 :HLEKPEVRRLAEEAG 1fmtB 217 :SLSAAQLERCIRAFN T0316 188 :LSTAKKKD 1fmtB 235 :MSWLEIEG T0316 197 :TGICFIG 1fmtB 243 :QPVKVWK T0316 204 :EKN 1fmtB 254 :DTA T0316 215 :LPAQPGRMMTVD 1fmtB 257 :TNAAPGTILEAN T0316 326 :GEKTEVIFAE 1fmtB 269 :KQGIQVATGD T0316 344 :QAVVFY 1fmtB 279 :GILNLL Number of specific fragments extracted= 18 number of extra gaps= 0 total=856 Number of alignments=55 # 1fmtB read from 1fmtB/merged-good-all-a2m # found chain 1fmtB in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1fmtB)E2 Warning: unaligning (T0316)C50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtB)L46 T0316 6 :KTRVVVGM 1fmtB 3 :SLRIIFAG T0316 20 :SVTALLLKEQGYDVIGIFM 1fmtB 16 :ARHLDALLSSGHNVVGVFT T0316 46 :ENGV 1fmtB 35 :QPDR T0316 58 :DVVAVADQIGIPYYS 1fmtB 50 :PVKVLAEEKGLPVFQ T0316 100 :DVMCNKEI 1fmtB 65 :PVSLRPQE T0316 112 :FLDYAITLGADYVATGHY 1fmtB 73 :NQQLVAELQADVMVVVAY T0316 137 :DG 1fmtB 91 :GL T0316 153 :TYFLSQLSQEQLQK 1fmtB 168 :YDKLAELGPQGLIT T0316 172 :GHLEKPEVRRLAEEAG 1fmtB 216 :WSLSAAQLERCIRAFN T0316 197 :TGICFI 1fmtB 233 :WPMSWL T0316 232 :EHAGLMYYTI 1fmtB 239 :EIEGQPVKVW T0316 246 :GLGIGGQHGGDNAPW 1fmtB 249 :KASVIDTATNAAPGT T0316 322 :VH 1fmtB 264 :IL T0316 324 :VKGEKTEVIFAE 1fmtB 267 :ANKQGIQVATGD T0316 343 :GQAVV 1fmtB 279 :GILNL T0316 348 :FYD 1fmtB 285 :SLQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=872 Number of alignments=56 # 1fmtB read from 1fmtB/merged-good-all-a2m # found chain 1fmtB in template set Warning: unaligning (T0316)S5 because first residue in template chain is (1fmtB)E2 Warning: unaligning (T0316)D43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1fmtB)L46 Warning: unaligning (T0316)V49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1fmtB)L46 T0316 6 :KTRVVVGMS 1fmtB 3 :SLRIIFAGT T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1fmtB 15 :AARHLDALLSSGHNVVGVFTQPDR T0316 50 :CTA 1fmtB 47 :MPS T0316 58 :DVVAVADQIGIPYYS 1fmtB 50 :PVKVLAEEKGLPVFQ T0316 104 :NKEIKFKAFLDYAITLGADYVATGHY 1fmtB 65 :PVSLRPQENQQLVAELQADVMVVVAY T0316 138 :GTVHMLRGVDNGKDQTYFLS 1fmtB 149 :DMLYKLSCPITAEDTSGTLY T0316 162 :EQLQKTM 1fmtB 169 :DKLAELG T0316 176 :KPEVRRLAEEAG 1fmtB 176 :PQGLITTLKQLA T0316 202 :IGE 1fmtB 204 :AEK T0316 205 :KNFKNFLS 1fmtB 218 :LSAAQLER T0316 213 :NYLPAQPGRMMTVDGR 1fmtB 228 :RAFNPWPMSWLEIEGQ T0316 259 :PWFVVGKDLSKN 1fmtB 244 :PVKVWKASVIDT T0316 296 :TREMPEEFTLE 1fmtB 256 :ATNAAPGTILE T0316 324 :VKGEKTEVIFAEPQRAI 1fmtB 267 :ANKQGIQVATGDGILNL T0316 361 :DNAYRDGQVCQ 1fmtB 284 :LSLQPAGKKAM Number of specific fragments extracted= 15 number of extra gaps= 0 total=887 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kk1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1kk1A/merged-good-all-a2m # 1kk1A read from 1kk1A/merged-good-all-a2m # found chain 1kk1A in training set Warning: unaligning (T0316)G220 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kk1A)K228 Warning: unaligning (T0316)V225 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)K228 Warning: unaligning (T0316)R297 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kk1A)E339 Warning: unaligning (T0316)P300 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)E339 T0316 7 :TRVVVGM 1kk1A 108 :DGAILVI T0316 19 :SSVTALLLKEQGYD 1kk1A 125 :TREHLMALQIIGQK T0316 33 :VIGIFM 1kk1A 140 :IIIAQN T0316 46 :ENGVC 1kk1A 146 :KIELV T0316 52 :ATEDYKDVVAVADQI 1kk1A 151 :DKEKALENYRQIKEF T0316 67 :GIPYYSVNF 1kk1A 173 :NAPIIPISA T0316 92 :RAGR 1kk1A 182 :LHGA T0316 108 :KFKAFLDYAITL 1kk1A 186 :NIDVLVKAIEDF T0316 188 :LSTAKKKDSTGICFIGEKNFK 1kk1A 200 :TPKRDPNKPPKMLVLRSFDVN T0316 218 :QP 1kk1A 221 :KP T0316 226 :DGRDMGEHAGLMYYTIG 1kk1A 253 :PGVPYEEHGRIKYEPIT T0316 243 :QRGGLGIGGQHGGDNA 1kk1A 271 :EIVSLQAGGQFVEEAY T0316 259 :PWFVVGKDLSKN 1kk1A 289 :GLVGVGTKLDPY T0316 271 :ILYVGQGFYHDSLMSTSLEASQVHFT 1kk1A 310 :NVVGKPGKLPPVWDSLRLEVHLLERV T0316 301 :E 1kk1A 340 :Q T0316 302 :EFTLECTAKFRY 1kk1A 348 :KRKEVLLLNVGT T0316 316 :PDSKVTVHVK 1kk1A 360 :ARTMGLVTGL T0316 326 :GEKTEVIFAEP 1kk1A 371 :KDEIEVKLQIP T0316 338 :RAITPGQAVVFY 1kk1A 382 :VCAEPGDRVAIS T0316 350 :DGEEC 1kk1A 397 :GSRWR T0316 355 :LGGGLID 1kk1A 403 :IGYGIIK Number of specific fragments extracted= 21 number of extra gaps= 0 total=908 Number of alignments=58 # 1kk1A read from 1kk1A/merged-good-all-a2m # found chain 1kk1A in training set Warning: unaligning (T0316)K193 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)K228 Warning: unaligning (T0316)Y279 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)E339 T0316 7 :TRVVVGM 1kk1A 108 :DGAILVI T0316 19 :SSVTALLLKEQGYD 1kk1A 125 :TREHLMALQIIGQK T0316 33 :VIGIFM 1kk1A 140 :IIIAQN T0316 46 :ENGVC 1kk1A 146 :KIELV T0316 52 :ATEDYKDVVAVADQI 1kk1A 151 :DKEKALENYRQIKEF T0316 67 :GIPYYSVNFE 1kk1A 173 :NAPIIPISAL T0316 93 :AGR 1kk1A 183 :HGA T0316 108 :KFKAFLDYAITL 1kk1A 186 :NIDVLVKAIEDF T0316 120 :GA 1kk1A 202 :KR T0316 132 :VARD 1kk1A 204 :DPNK T0316 137 :DGTVHMLRGVDNGK 1kk1A 208 :PPKMLVLRSFDVNK T0316 189 :S 1kk1A 222 :P T0316 194 :K 1kk1A 229 :L T0316 197 :TG 1kk1A 230 :VG T0316 226 :DGRDMGEHAGLMYYTIGQRG 1kk1A 245 :VGDEIEIRPGVPYEEHGRIK T0316 246 :GLGIGG 1kk1A 269 :TTEIVS T0316 252 :QHGG 1kk1A 281 :FVEE T0316 256 :DNAPWFVVGK 1kk1A 287 :PGGLVGVGTK T0316 266 :DLSKNILYVGQG 1kk1A 305 :DLMAGNVVGKPG T0316 280 :H 1kk1A 340 :Q T0316 297 :REMPEEFTLECTAKFRYRQPDSKVTVH 1kk1A 341 :ELKVEPIKRKEVLLLNVGTARTMGLVT T0316 324 :VKGEKTEVIFAEPQRAI 1kk1A 369 :LGKDEIEVKLQIPVCAE T0316 342 :PGQAVVFYD 1kk1A 386 :PGDRVAISR T0316 351 :GE 1kk1A 397 :GS T0316 353 :ECLGGGLID 1kk1A 401 :RLIGYGIIK Number of specific fragments extracted= 25 number of extra gaps= 0 total=933 Number of alignments=59 # 1kk1A read from 1kk1A/merged-good-all-a2m # found chain 1kk1A in training set Warning: unaligning (T0316)Q152 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kk1A)K228 Warning: unaligning (T0316)H173 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)K228 Warning: unaligning (T0316)R297 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kk1A)E339 Warning: unaligning (T0316)P300 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kk1A)E339 T0316 7 :TRVVVGMS 1kk1A 108 :DGAILVIA T0316 16 :GVDSSVTALLLKEQGYD 1kk1A 122 :RPQTREHLMALQIIGQK T0316 33 :VIGIFMKNWDDT 1kk1A 140 :IIIAQNKIELVD T0316 53 :TEDYKDVVAVADQI 1kk1A 152 :KEKALENYRQIKEF T0316 67 :GIPYYS 1kk1A 173 :NAPIIP T0316 101 :VMCNKEIKFKAFLDYAIT 1kk1A 179 :ISALHGANIDVLVKAIED T0316 122 :D 1kk1A 201 :P T0316 133 :ARDEDGTVHM 1kk1A 202 :KRDPNKPPKM T0316 143 :LRGVDNGKD 1kk1A 214 :LRSFDVNKP T0316 174 :LE 1kk1A 229 :LV T0316 189 :STAKKKDSTGIC 1kk1A 241 :GKLKVGDEIEIR T0316 219 :PGRMMTVDGRDMGEHAGLMYYTIGQRGGLGIGG 1kk1A 253 :PGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEA T0316 256 :DNAPWFVVGKDLSK 1kk1A 286 :YPGGLVGVGTKLDP T0316 270 :NILYVGQGFYHDSLMSTSLEASQVHFT 1kk1A 309 :GNVVGKPGKLPPVWDSLRLEVHLLERV T0316 301 :E 1kk1A 340 :Q T0316 303 :FTLECTAKF 1kk1A 349 :RKEVLLLNV T0316 314 :RQPDSKVTVH 1kk1A 358 :GTARTMGLVT T0316 324 :VKGEKTEVIFAEPQ 1kk1A 369 :LGKDEIEVKLQIPV T0316 339 :AITPGQAVVFYD 1kk1A 383 :CAEPGDRVAISR T0316 351 :GE 1kk1A 397 :GS T0316 353 :ECLGGGLID 1kk1A 401 :RLIGYGIIK Number of specific fragments extracted= 21 number of extra gaps= 0 total=954 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uc8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1uc8A expands to /projects/compbio/data/pdb/1uc8.pdb.gz 1uc8A:Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X Bad short name: UNK for alphabet: ExtAA Replacing UNK with X # T0316 read from 1uc8A/merged-good-all-a2m # 1uc8A read from 1uc8A/merged-good-all-a2m # adding 1uc8A to template set # found chain 1uc8A in template set Warning: unaligning (T0316)K193 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X141 Warning: unaligning (T0316)K194 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X142 Warning: unaligning (T0316)D195 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X143 Warning: unaligning (T0316)S196 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X144 Warning: unaligning (T0316)T197 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X146 Warning: unaligning (T0316)G198 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X147 Warning: unaligning (T0316)I199 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X148 Warning: unaligning (T0316)C200 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X149 Warning: unaligning (T0316)F201 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X150 Warning: unaligning (T0316)I202 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X151 Warning: unaligning (T0316)G203 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X152 Warning: unaligning (T0316)Q276 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X153 Warning: unaligning (T0316)G277 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X154 Warning: unaligning (T0316)E301 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uc8A)G160 Warning: unaligning (T0316)A334 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uc8A)A209 T0316 34 :IGIFM 1uc8A 2 :LAILY T0316 46 :EN 1uc8A 7 :DR T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFEK 1uc8A 9 :IRPDERMLFERAEALGLPYKKVYVPA T0316 92 :RAGRTPNPD 1uc8A 38 :VLGERPKEL T0316 101 :VMCNKEIKFKAFLDYAITLGADYV 1uc8A 54 :ERCVSQSRGLAAARYLTALGIPVV T0316 135 :DEDGTVHMLR 1uc8A 78 :NRPEVIEACG T0316 156 :LSQLSQEQLQKTMFPLGH 1uc8A 88 :DKWATSVALAKAGLPQPK T0316 174 :LEKPEVRRLAEEAGL 1uc8A 110 :TDREEALRLMEAFGY T0316 189 :STAK 1uc8A 130 :PVIG Warning: shrinking fragment to make legal peptide bond T0316 302 :EFTLECTAKFRYRQPDSKVTVHVKGEK 1uc8A 161 :FQHQLFYIQEYVEKPGRDIRVFVVGER T0316 329 :TEVIF 1uc8A 189 :IAAIY Number of specific fragments extracted= 11 number of extra gaps= 2 total=965 Number of alignments=61 # 1uc8A read from 1uc8A/merged-good-all-a2m # found chain 1uc8A in template set Warning: unaligning (T0316)K192 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X145 Warning: unaligning (T0316)K193 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X146 Warning: unaligning (T0316)K194 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X147 Warning: unaligning (T0316)D195 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X148 Warning: unaligning (T0316)S196 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X149 Warning: unaligning (T0316)T197 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X150 Warning: unaligning (T0316)G198 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X151 Warning: unaligning (T0316)I199 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X152 Warning: unaligning (T0316)C200 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X153 Warning: unaligning (T0316)F201 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X154 Warning: unaligning (T0316)Q218 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uc8A)G160 Warning: unaligning (T0316)G275 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uc8A)A209 T0316 34 :IGIFM 1uc8A 2 :LAILY T0316 46 :E 1uc8A 7 :D T0316 48 :G 1uc8A 8 :R T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFEK 1uc8A 9 :IRPDERMLFERAEALGLPYKKVYVPA T0316 93 :AGRTPNPD 1uc8A 39 :LGERPKEL T0316 101 :VMCNKEIKFKAFLDYAITLGADYV 1uc8A 54 :ERCVSQSRGLAAARYLTALGIPVV T0316 129 :YARVARD 1uc8A 78 :NRPEVIE T0316 148 :NGKDQTYFLSQLSQEQL 1uc8A 85 :ACGDKWATSVALAKAGL T0316 174 :LEKPEVRRLAEEAGLS 1uc8A 110 :TDREEALRLMEAFGYP T0316 190 :T 1uc8A 131 :V T0316 232 :EHAGLMY 1uc8A 161 :FQHQLFY T0316 249 :IGGQHGGDNAPWFVVGKDLSKNILYV 1uc8A 168 :IQEYVEKPGRDIRVFVVGERAIAAIY T0316 278 :FYHDSLMSTSLEASQV 1uc8A 213 :PLTEEVARLSVKAAEA T0316 296 :TR 1uc8A 229 :VG T0316 342 :PGQAVV 1uc8A 231 :GGVVAV T0316 348 :FY 1uc8A 238 :LF T0316 350 :DGEECLGG 1uc8A 242 :ERGLLVNE Number of specific fragments extracted= 17 number of extra gaps= 1 total=982 Number of alignments=62 # 1uc8A read from 1uc8A/merged-good-all-a2m # found chain 1uc8A in template set Warning: unaligning (T0316)T286 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X141 Warning: unaligning (T0316)S287 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X142 Warning: unaligning (T0316)L288 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X143 Warning: unaligning (T0316)E289 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X144 Warning: unaligning (T0316)A290 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X145 Warning: unaligning (T0316)S291 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X146 Warning: unaligning (T0316)Q292 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X147 Warning: unaligning (T0316)V293 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X148 Warning: unaligning (T0316)H294 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X149 Warning: unaligning (T0316)F295 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X150 Warning: unaligning (T0316)T296 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X151 Warning: unaligning (T0316)R297 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X152 Warning: unaligning (T0316)E298 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X153 Warning: unaligning (T0316)M299 because of BadResidue code NON_STANDARD_RESIDUE at template residue (1uc8A)X154 Warning: unaligning (T0316)E335 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uc8A)A209 T0316 9 :VVVGMS 1uc8A 2 :LAILYD T0316 51 :TATEDYKDVVAVADQIGIPYYSVNFEK 1uc8A 8 :RIRPDERMLFERAEALGLPYKKVYVPA T0316 93 :AGRTPNPD 1uc8A 39 :LGERPKEL T0316 101 :VMCNKEIKFKAFLDYAITLGADYV 1uc8A 54 :ERCVSQSRGLAAARYLTALGIPVV T0316 159 :LSQEQLQKTM 1uc8A 78 :NRPEVIEACG T0316 175 :EKPEVRRLAEEAGLSTAK 1uc8A 88 :DKWATSVALAKAGLPQPK T0316 199 :ICFIGE 1uc8A 106 :TALATD T0316 205 :KNFKNFLSNYL 1uc8A 113 :EEALRLMEAFG T0316 258 :APWFV 1uc8A 124 :YPVVL T0316 265 :KDL 1uc8A 129 :KPV T0316 284 :MS 1uc8A 132 :IG Warning: shrinking fragment to make legal peptide bond T0316 302 :EFTLECTAKFRYRQPDSKVTVHVKGEKTEVIFA 1uc8A 161 :FQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIY Number of specific fragments extracted= 12 number of extra gaps= 1 total=994 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ni5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ni5A expands to /projects/compbio/data/pdb/1ni5.pdb.gz 1ni5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0316 read from 1ni5A/merged-good-all-a2m # 1ni5A read from 1ni5A/merged-good-all-a2m # adding 1ni5A to template set # found chain 1ni5A in template set T0316 7 :TRVVVGMSGGVDSSVTALLLKE 1ni5A 13 :RQILVAFSGGLDSTVLLHQLVQ T0316 29 :Q 1ni5A 38 :E T0316 30 :GYDVIGIFM 1ni5A 41 :GVALRAIHV T0316 46 :ENGVCT 1ni5A 50 :HHGLSA T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1ni5A 57 :ADAWVTHCENVCQQWQVPLVVERVQ T0316 92 :RAGRTPNPDVMCNKE 1ni5A 82 :LAQEGLGIEAQARQA T0316 112 :FLDYAITL 1ni5A 97 :RYQAFART T0316 120 :G 1ni5A 108 :G T0316 122 :DYVATGHYA 1ni5A 109 :EVLVTAQHL T0316 134 :RDEDGTVHM 1ni5A 118 :DDQCETFLL T0316 143 :LR 1ni5A 130 :RG T0316 145 :GVDNGKDQTYFLSQLSQ 1ni5A 133 :GPAGLSAMAEVSEFAGT T0316 166 :KTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPG 1ni5A 150 :RLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPH T0316 231 :GE 1ni5A 289 :AS T0316 245 :GGLGIGG 1ni5A 291 :PCLRLGA T0316 261 :FVVGKDLSKNILYVGQGFYHD 1ni5A 298 :FEIRRYQSQLWWIKSVTGQSE T0316 289 :EASQVHFTREM 1ni5A 319 :NIVPWQTWLQP T0316 301 :EEFTLECTA 1ni5A 333 :PAGLGSVQL T0316 310 :KFRYRQPDSKVTVHVK 1ni5A 346 :DIRPPRADEAVSVRFK T0316 326 :GEKTEVIFAEPQRA 1ni5A 363 :PGLLHIVGRNGGRK T0316 340 :ITPGQAVVFYDGEECLGG 1ni5A 390 :LRDTTPLLFYGETLIAAA T0316 358 :GLIDNAYR 1ni5A 410 :FVTQEGVA Number of specific fragments extracted= 22 number of extra gaps= 0 total=1016 Number of alignments=64 # 1ni5A read from 1ni5A/merged-good-all-a2m # found chain 1ni5A in template set T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQ 1ni5A 12 :SRQILVAFSGGLDSTVLLHQLVQW T0316 30 :GYDVIGIFM 1ni5A 41 :GVALRAIHV T0316 44 :TDENGVC 1ni5A 50 :HHGLSAN T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1ni5A 57 :ADAWVTHCENVCQQWQVPLVVERVQ T0316 92 :RAGRTPNPDVMCNKE 1ni5A 82 :LAQEGLGIEAQARQA T0316 108 :KFKAFLD 1ni5A 97 :RYQAFAR T0316 119 :L 1ni5A 104 :T T0316 120 :G 1ni5A 108 :G T0316 122 :DYVATGHYARVARD 1ni5A 109 :EVLVTAQHLDDQCE T0316 137 :DGTVHMLRGVDNGK 1ni5A 123 :TFLLALKRGSGPAG T0316 153 :TYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQP 1ni5A 137 :LSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWP T0316 220 :GRMMTVDGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFV 1ni5A 290 :SPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLEL T0316 300 :PEEFT 1ni5A 333 :PAGLG T0316 305 :LECTAKFRYRQPDSKVTVH 1ni5A 341 :LNAGGDIRPPRADEAVSVR T0316 324 :VKGEKT 1ni5A 361 :KAPGLL T0316 342 :PGQAVVFYDGEECLGGGLI 1ni5A 392 :DTTPLLFYGETLIAAAGVF T0316 361 :DNAYRDGQVCQYI 1ni5A 414 :EGVAEGENGVSFV Number of specific fragments extracted= 17 number of extra gaps= 0 total=1033 Number of alignments=65 # 1ni5A read from 1ni5A/merged-good-all-a2m # found chain 1ni5A in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1ni5A 11 :TSRQILVAFSGGLDSTVLLHQLVQW T0316 30 :GYDVIGIFMKNWDDT 1ni5A 41 :GVALRAIHVHHGLSA T0316 51 :TATEDYKDVVAVADQIGIPYYSVNFE 1ni5A 56 :NADAWVTHCENVCQQWQVPLVVERVQ T0316 82 :RVFEYFLAEYRAGRTPN 1ni5A 92 :QARQARYQAFARTLLPG T0316 122 :DYVATGHYA 1ni5A 109 :EVLVTAQHL T0316 151 :DQTYFLSQLSQEQLQKT 1ni5A 218 :EQESLLDELLADDLAHC T0316 168 :MFPLGHLEKPE 1ni5A 243 :IVPMLAMSDAR T0316 179 :VRRLAEEAGLSTAK 1ni5A 258 :IRRWLAGQNAPMPS T0316 204 :EKNFKNFLSNYLP 1ni5A 272 :RDALVRIWQEVAL T0316 217 :AQPGRMMTVDGRDMGE 1ni5A 287 :EDASPCLRLGAFEIRR T0316 256 :DNAPWFVVGK 1ni5A 303 :YQSQLWWIKS T0316 280 :HDSLMSTSLEASQVHFTREMPEEFT 1ni5A 313 :VTGQSENIVPWQTWLQPLELPAGLG T0316 319 :KVTVHV 1ni5A 338 :SVQLNA T0316 325 :KGEKTEVIFAEPQRAITPGQ 1ni5A 352 :ADEAVSVRFKAPGLLHIVGR T0316 345 :AVVFYDGEECLGG 1ni5A 395 :PLLFYGETLIAAA T0316 358 :GLIDNAYRDGQVCQY 1ni5A 410 :FVTQEGVAEGENGVS Number of specific fragments extracted= 16 number of extra gaps= 0 total=1049 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2czcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2czcA expands to /projects/compbio/data/pdb/2czc.pdb.gz 2czcA:# T0316 read from 2czcA/merged-good-all-a2m # 2czcA read from 2czcA/merged-good-all-a2m # adding 2czcA to template set # found chain 2czcA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (2czcA)M1 T0316 8 :RVVVGMSG 2czcA 2 :KVKVGVNG T0316 16 :GVDSSVTALLLKEQ 2czcA 11 :GTIGKRVAYAVTKQ T0316 30 :GYDVIGIFM 2czcA 26 :DMELIGITK T0316 46 :EN 2czcA 35 :TK T0316 52 :ATEDYKDVV 2czcA 37 :PDFEAYRAK T0316 65 :QIGIPYYSV 2czcA 46 :ELGIPVYAA T0316 76 :EKEYWDRVFEYFL 2czcA 55 :SEEFIPRFEKEGF T0316 89 :AEYRAGR 2czcA 74 :NDLLEKV T0316 96 :TP 2czcA 87 :TP T0316 104 :NK 2czcA 89 :GG T0316 108 :KFKAFLDYAITLGADYVATGHYA 2czcA 91 :IGAKNKPLYEKAGVKAIFQGGEK T0316 134 :RDEDGT 2czcA 114 :ADVAEV T0316 167 :TMFPLGHL 2czcA 246 :LFEKEKGF T0316 175 :EKPEVRRLAEEAGLST 2czcA 255 :STAQIIEFARDLHREW T0316 195 :DS 2czcA 271 :NN T0316 197 :TGICFI 2czcA 274 :YEIAVW T0316 208 :KNFL 2czcA 280 :KESI T0316 323 :HVKGEKTEVIFA 2czcA 284 :NIKGNRLFYIQA Number of specific fragments extracted= 18 number of extra gaps= 0 total=1067 Number of alignments=67 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set T0316 6 :KTRVVVG 2czcA 2 :KVKVGVN T0316 19 :SSVTALLLKE 2czcA 14 :GKRVAYAVTK T0316 29 :QGYDVIGIFM 2czcA 25 :DDMELIGITK T0316 47 :NG 2czcA 35 :TK T0316 52 :ATEDYKDVV 2czcA 37 :PDFEAYRAK T0316 65 :QIGIPYYS 2czcA 46 :ELGIPVYA T0316 75 :FEKEYWDRVFEY 2czcA 54 :ASEEFIPRFEKE T0316 87 :FLAEYRA 2czcA 72 :TLNDLLE T0316 94 :GR 2czcA 89 :GG T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 2czcA 91 :IGAKNKPLYEKAGVKAIFQGGEKADVAE T0316 139 :TVHMLRGVDNGK 2czcA 243 :RVLLFEKEKGFD T0316 175 :EKPEVRRLAEEAGLSTAKK 2czcA 255 :STAQIIEFARDLHREWNNL T0316 197 :TGICFIGEK 2czcA 274 :YEIAVWKES T0316 322 :VHVKGEKTEVIF 2czcA 283 :INIKGNRLFYIQ Number of specific fragments extracted= 14 number of extra gaps= 0 total=1081 Number of alignments=68 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set T0316 8 :RVVVGMSG 2czcA 2 :KVKVGVNG T0316 16 :GVDSSVTALLLKEQG 2czcA 11 :GTIGKRVAYAVTKQD T0316 31 :YDVIGIFMKNWD 2czcA 27 :MELIGITKTKPD T0316 57 :KDVVA 2czcA 39 :FEAYR T0316 63 :ADQIGIPYYSVN 2czcA 44 :AKELGIPVYAAS T0316 75 :FEKEYWDR 2czcA 58 :FIPRFEKE T0316 88 :LAEYRAGR 2czcA 73 :LNDLLEKV T0316 101 :VMCNKEIKFKAFLDYAITLGADYVATGH 2czcA 84 :VDATPGGIGAKNKPLYEKAGVKAIFQGG T0316 138 :GTVHMLRGVDN 2czcA 217 :HVHSVMVELKK T0316 158 :QLSQEQLQKTM 2czcA 228 :PLTKDDVIDIF T0316 169 :FPLGHLEKPEVRRLAEEAGLSTAKK 2czcA 249 :KEKGFDSTAQIIEFARDLHREWNNL T0316 197 :TGICFI 2czcA 274 :YEIAVW T0316 212 :SNYLP 2czcA 280 :KESIN T0316 324 :VKGEKTEVIF 2czcA 285 :IKGNRLFYIQ Number of specific fragments extracted= 14 number of extra gaps= 0 total=1095 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s0uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1s0uA expands to /projects/compbio/data/pdb/1s0u.pdb.gz 1s0uA:# T0316 read from 1s0uA/merged-good-all-a2m # 1s0uA read from 1s0uA/merged-good-all-a2m # adding 1s0uA to template set # found chain 1s0uA in template set Warning: unaligning (T0316)V73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s0uA)N213 Warning: unaligning (T0316)K108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s0uA)N213 Warning: unaligning (T0316)R144 because of BadResidue code BAD_PEPTIDE in next template residue (1s0uA)P249 Warning: unaligning (T0316)G145 because of BadResidue code BAD_PEPTIDE at template residue (1s0uA)P249 T0316 7 :TRVVVGM 1s0uA 135 :DGAILVI T0316 19 :SSVTALLLKEQGYD 1s0uA 152 :TKEHLMALEILGID T0316 33 :VIGIFM 1s0uA 167 :IIIVQN T0316 46 :ENGVC 1s0uA 173 :KIDLV T0316 52 :ATEDYKDVVAVADQI 1s0uA 178 :DEKQAEENYEQIKEF T0316 67 :GIPYYS 1s0uA 200 :NAPIIP T0316 109 :FKAFLDYAITL 1s0uA 214 :IDVLLKAIQDF T0316 131 :RVARDEDGTVHM 1s0uA 227 :TPKRDPDATPRM T0316 143 :L 1s0uA 247 :N T0316 146 :VDNGKDQTY 1s0uA 250 :GTEIKDLKG T0316 196 :S 1s0uA 259 :G T0316 197 :TGICFIGEKN 1s0uA 261 :LGGAIIQGVF T0316 218 :QPGRMMTV 1s0uA 271 :KVGDEIEI T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGIGGQH 1s0uA 289 :KTFWKPLTTKIVSLAAGNTILRKAHPGG T0316 260 :WFVVGKDLS 1s0uA 317 :LIGVGTTLD T0316 271 :ILYVGQGFYHDSLMSTSLEASQVHFTREMPE 1s0uA 337 :SVVGLPGTLPPIREKITIRANLLDRVVGTKE T0316 302 :EFTLECTAKF 1s0uA 375 :RTGEVLMLNI T0316 314 :RQPDSKVTVH 1s0uA 385 :GTATTAGVIT T0316 324 :VKGEKTEVIFAEP 1s0uA 396 :ARGDIADIKLKLP T0316 338 :RAITPGQAVVFY 1s0uA 409 :ICAEIGDRVAIS T0316 350 :DGEECLGGGLID 1s0uA 425 :SRWRLIGYGTIE Number of specific fragments extracted= 21 number of extra gaps= 1 total=1116 Number of alignments=70 # 1s0uA read from 1s0uA/merged-good-all-a2m # found chain 1s0uA in template set Warning: unaligning (T0316)V73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s0uA)N213 Warning: unaligning (T0316)K108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s0uA)N213 Warning: unaligning (T0316)K150 because of BadResidue code BAD_PEPTIDE in next template residue (1s0uA)P249 Warning: unaligning (T0316)Q158 because of BadResidue code BAD_PEPTIDE at template residue (1s0uA)P249 T0316 7 :TRVVVGM 1s0uA 135 :DGAILVI T0316 19 :SSVTALLLKEQGYD 1s0uA 152 :TKEHLMALEILGID T0316 33 :VIGIFM 1s0uA 167 :IIIVQN T0316 46 :ENGVC 1s0uA 173 :KIDLV T0316 52 :ATEDYKDVVAVADQI 1s0uA 178 :DEKQAEENYEQIKEF T0316 67 :GIPYYS 1s0uA 200 :NAPIIP T0316 109 :FKAFLDYAITL 1s0uA 214 :IDVLLKAIQDF T0316 120 :GA 1s0uA 229 :KR T0316 132 :V 1s0uA 231 :D T0316 134 :RDEDGTVHMLRGVDNG 1s0uA 232 :PDATPRMYVARSFDIN T0316 159 :LSQEQLQK 1s0uA 250 :GTEIKDLK T0316 191 :AKKKDSTGICFIGEKNFKNFLSNYLPA 1s0uA 309 :LRKAHPGGLIGVGTTLDPYLTKSDALT T0316 218 :QPGRMMTV 1s0uA 341 :LPGTLPPI T0316 226 :DGRDM 1s0uA 350 :EKITI T0316 239 :YTI 1s0uA 355 :RAN T0316 249 :IGGQH 1s0uA 358 :LLDRV T0316 297 :REMPEEFTLEC 1s0uA 363 :VGTKEELKIEP T0316 308 :TAKFRYRQPDSKVTVH 1s0uA 379 :VLMLNIGTATTAGVIT T0316 324 :VKGEKTEVIFAEPQRAITPGQAVVFYD 1s0uA 396 :ARGDIADIKLKLPICAEIGDRVAISRR T0316 351 :GE 1s0uA 425 :SR T0316 353 :ECLGGGLID 1s0uA 428 :RLIGYGTIE Number of specific fragments extracted= 21 number of extra gaps= 1 total=1137 Number of alignments=71 # 1s0uA read from 1s0uA/merged-good-all-a2m # found chain 1s0uA in template set Warning: unaligning (T0316)V73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s0uA)N213 Warning: unaligning (T0316)K108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s0uA)N213 Warning: unaligning (T0316)K150 because of BadResidue code BAD_PEPTIDE in next template residue (1s0uA)P249 Warning: unaligning (T0316)D151 because of BadResidue code BAD_PEPTIDE at template residue (1s0uA)P249 Warning: unaligning (T0316)R244 because of BadResidue code BAD_PEPTIDE in next template residue (1s0uA)P280 Warning: unaligning (T0316)G245 because of BadResidue code BAD_PEPTIDE at template residue (1s0uA)P280 T0316 7 :TRVVVGMSG 1s0uA 135 :DGAILVIAA T0316 16 :GVDSSVTALLLKEQGYD 1s0uA 149 :QPQTKEHLMALEILGID T0316 33 :VIGIFMKNWDDTDEN 1s0uA 167 :IIIVQNKIDLVDEKQ T0316 52 :ATEDYKDVVAVADQI 1s0uA 182 :AEENYEQIKEFVKGT T0316 67 :GIPYYS 1s0uA 200 :NAPIIP T0316 109 :FKAFLDYAIT 1s0uA 214 :IDVLLKAIQD T0316 119 :LGAD 1s0uA 225 :IPTP T0316 134 :RDEDGTVHMLRGV 1s0uA 230 :RDPDATPRMYVAR T0316 147 :DNG 1s0uA 245 :DIN T0316 168 :MFPLGHLE 1s0uA 250 :GTEIKDLK T0316 197 :TGICFIGE 1s0uA 261 :LGGAIIQG T0316 223 :MTVDGR 1s0uA 270 :FKVGDE T0316 241 :IGQ 1s0uA 276 :IEI T0316 246 :GLGIGGQHGGDNAPWFV 1s0uA 281 :GIKVTEGNKTFWKPLTT T0316 263 :VGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPE 1s0uA 309 :LRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP T0316 303 :FTLECTAKFRYRQPD 1s0uA 348 :IREKITIRANLLDRV T0316 318 :SKVTVH 1s0uA 389 :TAGVIT T0316 324 :VKGEKTEVIFAEPQ 1s0uA 396 :ARGDIADIKLKLPI T0316 339 :AITPGQAVVFYD 1s0uA 410 :CAEIGDRVAISR T0316 351 :GEECLGGGLID 1s0uA 426 :RWRLIGYGTIE Number of specific fragments extracted= 20 number of extra gaps= 2 total=1157 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c5aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c5aA expands to /projects/compbio/data/pdb/2c5a.pdb.gz 2c5aA:Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 883, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 885, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 937, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 945, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 947, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1201, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1207, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1673, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1677, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1679, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1681, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1683, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 1685, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2060, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2062, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2064, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2066, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2068, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2070, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2185, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2189, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2191, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2193, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2195, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2220, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2224, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2226, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2228, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2534, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2538, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2540, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2542, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2544, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2807, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2811, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2813, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2856, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2860, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2862, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2864, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2866, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2868, because occupancy 0.500 <= existing 0.500 in 2c5aA Skipped atom 2890, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2894, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2896, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2898, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2900, because occupancy 0.300 <= existing 0.700 in 2c5aA Skipped atom 2902, because occupancy 0.300 <= existing 0.700 in 2c5aA # T0316 read from 2c5aA/merged-good-all-a2m # 2c5aA read from 2c5aA/merged-good-all-a2m # adding 2c5aA to template set # found chain 2c5aA in template set T0316 4 :NSKT 2c5aA 23 :WPSE T0316 8 :RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVC 2c5aA 29 :KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFC T0316 69 :PYYSVNFE 2c5aA 73 :EFHLVDLR T0316 77 :KEYWDRVF 2c5aA 82 :MENCLKVT T0316 88 :L 2c5aA 90 :E T0316 89 :AEYRA 2c5aA 113 :SVIMY T0316 103 :CNKEI 2c5aA 118 :NNTMI T0316 109 :FKAFLDYAITLGADYVATGHYARVARDE 2c5aA 123 :SFNMIEAARINGIKRFFYASSACIYPEF T0316 137 :DGT 2c5aA 153 :LET T0316 177 :PEVRRLAEEAG 2c5aA 278 :NEMAEMVLSFE T0316 188 :LSTAKKKDSTGICF 2c5aA 292 :LPIHHIPGPEGVRG T0316 202 :IGEKNFKNFL 2c5aA 308 :SDNNLIKEKL T0316 220 :GRMMTV 2c5aA 318 :GWAPNM T0316 226 :DGRDMG 2c5aA 349 :DVSLYG Number of specific fragments extracted= 14 number of extra gaps= 0 total=1171 Number of alignments=73 # 2c5aA read from 2c5aA/merged-good-all-a2m # found chain 2c5aA in template set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 2c5aA 25 :SENLKISITGAGGFIASHIARRLKHEGHYVIASDW T0316 46 :ENGVCTATEDY 2c5aA 60 :KKNEHMTEDMF T0316 68 :I 2c5aA 71 :C T0316 69 :PYYSVNFE 2c5aA 73 :EFHLVDLR T0316 84 :FEYFLAEYRAGR 2c5aA 81 :VMENCLKVTEGV T0316 100 :D 2c5aA 93 :D T0316 101 :VMCNKEI 2c5aA 116 :MYNNTMI T0316 109 :FKAFLDYAITLGADYVATGHYARVARDE 2c5aA 123 :SFNMIEAARINGIKRFFYASSACIYPEF T0316 137 :DGTVHMLRGVDNGK 2c5aA 155 :TTNVSLKESDAWPA T0316 151 :DQ 2c5aA 170 :PQ T0316 153 :TYFL 2c5aA 178 :KLAT T0316 176 :KPEVRRLAEEAG 2c5aA 277 :MNEMAEMVLSFE T0316 188 :LSTAKKKDST 2c5aA 292 :LPIHHIPGPE T0316 198 :GICFIGEKNFKNFLSNYLPAQ 2c5aA 304 :RGRNSDNNLIKEKLGWAPNMR T0316 280 :HDSLMSTSLEA 2c5aA 326 :KEGLRITYFWI T0316 291 :SQVHFTREMPEEF 2c5aA 341 :EKEKAKGSDVSLY Number of specific fragments extracted= 16 number of extra gaps= 0 total=1187 Number of alignments=74 # 2c5aA read from 2c5aA/merged-good-all-a2m # found chain 2c5aA in template set T0316 2 :SDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVC 2c5aA 23 :WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFC T0316 51 :TATEDYKDVVAVAD 2c5aA 77 :VDLRVMENCLKVTE T0316 67 :GIPYYSV 2c5aA 91 :GVDHVFN T0316 80 :WDRVFEYF 2c5aA 112 :HSVIMYNN T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVAR 2c5aA 120 :TMISFNMIEAARINGIKRFFYASSACIYP T0316 152 :QTYFLS 2c5aA 171 :QDAFGL T0316 162 :EQLQK 2c5aA 177 :EKLAT T0316 176 :KPEVRRLAEEAGLSTA 2c5aA 182 :EELCKHYNKDFGIECR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1195 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iirA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1iirA/merged-good-all-a2m # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0316)T7 because first residue in template chain is (1iirA)M1 Warning: unaligning (T0316)N148 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)I149 Warning: unaligning (T0316)Q158 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)I149 Warning: unaligning (T0316)Q276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)G249 Warning: unaligning (T0316)G277 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)G249 T0316 8 :RVVVG 1iirA 2 :RVLLA T0316 18 :DS 1iirA 13 :DT T0316 20 :SVTALLLKEQGYDVIGIF 1iirA 18 :VALAVRVRDLGADVRMCA T0316 52 :ATEDYKD 1iirA 36 :PPDCAER T0316 63 :ADQIGIPYYSVN 1iirA 43 :LAEVGVPHVPVG T0316 77 :K 1iirA 69 :A T0316 85 :EYFLAEYRA 1iirA 70 :EDVRRFTTE T0316 108 :KFKAFLDYAITL 1iirA 79 :AIATQFDEIPAA T0316 120 :GADYVATG 1iirA 93 :GCAAVVTT T0316 128 :HYARVA 1iirA 121 :FYAFHC T0316 140 :VHM 1iirA 127 :PSY T0316 143 :LRGVD 1iirA 134 :YYPPP T0316 159 :LSQEQLQKTMF 1iirA 150 :DIPAQWERNNQ T0316 177 :PEVRRLAEEAGLST 1iirA 168 :GLLNSHRDAIGLPP T0316 191 :AKKKD 1iirA 218 :WILPD T0316 204 :EKNFKNFLSNYLPAQP 1iirA 223 :ERPLSPELAAFLDAGP T0316 258 :APWF 1iirA 239 :PPVY T0316 274 :VG 1iirA 243 :LG T0316 281 :DSLMSTSLEASQVHFTREMP 1iirA 260 :DAIRAHGRRVILSRGWADLV Number of specific fragments extracted= 19 number of extra gaps= 1 total=1214 Number of alignments=76 # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0316)T7 because first residue in template chain is (1iirA)M1 Warning: unaligning (T0316)F75 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)R63 Warning: unaligning (T0316)H141 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)I149 Warning: unaligning (T0316)G149 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)I149 Warning: unaligning (T0316)Q276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iirA)G249 Warning: unaligning (T0316)G277 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)G249 T0316 8 :RVVVG 1iirA 2 :RVLLA T0316 18 :DS 1iirA 13 :DT T0316 20 :SVTALLLKEQGYDVI 1iirA 18 :VALAVRVRDLGADVR T0316 36 :IFM 1iirA 33 :MCA T0316 52 :ATEDYK 1iirA 36 :PPDCAE T0316 62 :VADQIGIPYYSVN 1iirA 42 :RLAEVGVPHVPVG T0316 80 :WDRVFEYFLAEYRA 1iirA 76 :TTEAIATQFDEIPA T0316 94 :GR 1iirA 92 :EG T0316 100 :D 1iirA 94 :C T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVARDE 1iirA 101 :GLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSP T0316 137 :DGTV 1iirA 135 :YPPP T0316 150 :K 1iirA 150 :D T0316 153 :TYFLSQLSQEQLQKT 1iirA 151 :IPAQWERNNQSAYQR T0316 175 :EKPEVRRLAEEAGLSTAKK 1iirA 166 :YGGLLNSHRDAIGLPPVED T0316 197 :TGICFIGE 1iirA 191 :TDHPWVAA T0316 211 :LSNYLPAQP 1iirA 199 :DPVLAPLQP T0316 220 :GR 1iirA 237 :GP T0316 270 :NILYVG 1iirA 239 :PPVYLG T0316 278 :FYHDSLMSTSLEASQ 1iirA 250 :APADAVRVAIDAIRA T0316 350 :DGEECLGGGLIDNAYRDGQV 1iirA 265 :HGRRVILSRGWADLVLPDDG Number of specific fragments extracted= 20 number of extra gaps= 1 total=1234 Number of alignments=77 # 1iirA read from 1iirA/merged-good-all-a2m # found chain 1iirA in training set Warning: unaligning (T0316)T7 because first residue in template chain is (1iirA)M1 Warning: unaligning (T0316)K150 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iirA)I149 T0316 8 :RVVVGMSGG 1iirA 2 :RVLLATCGS T0316 18 :DS 1iirA 13 :DT T0316 20 :SVTALLLKEQGYDVIGIF 1iirA 18 :VALAVRVRDLGADVRMCA T0316 52 :ATEDYKDV 1iirA 36 :PPDCAERL T0316 64 :DQIGIPYYSV 1iirA 44 :AEVGVPHVPV T0316 76 :EKEYWDRVFEYFLAEYR 1iirA 72 :VRRFTTEAIATQFDEIP T0316 93 :AGR 1iirA 92 :EGC T0316 99 :PDVMC 1iirA 95 :AAVVT T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVARDED 1iirA 101 :GLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPY T0316 151 :DQ 1iirA 150 :DI T0316 161 :QEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKK 1iirA 152 :PAQWERNNQSAYQRYGGLLNSHRDAIGLPPVED Number of specific fragments extracted= 11 number of extra gaps= 0 total=1245 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d2eA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d2eA expands to /projects/compbio/data/pdb/1d2e.pdb.gz 1d2eA:# T0316 read from 1d2eA/merged-good-all-a2m # 1d2eA read from 1d2eA/merged-good-all-a2m # adding 1d2eA to template set # found chain 1d2eA in template set T0316 7 :TRVVVGM 1d2eA 145 :DGCILVV T0316 19 :SSVTALLLKEQGYD 1d2eA 161 :TREHLLLARQIGVE T0316 33 :VIGIFM 1d2eA 176 :VVVYVN T0316 46 :ENGVCTATEDYKDVVAVADQI 1d2eA 182 :KADAVQDSEMVELVELEIREL T0316 67 :GIPYYSVNFE 1d2eA 212 :ETPIIVGSAL T0316 90 :EYRAGRTPN 1d2eA 222 :CALEQRDPE T0316 103 :CNKE 1d2eA 231 :LGLK T0316 108 :KFKAFLDYAITL 1d2eA 235 :SVQKLLDAVDTY T0316 133 :ARDEDGT 1d2eA 251 :TRDLEKP T0316 167 :TMFP 1d2eA 258 :FLLP T0316 188 :LST 1d2eA 262 :VES T0316 191 :AKK 1d2eA 266 :YSI T0316 195 :DSTGICFIGEKNF 1d2eA 269 :PGRGTVVTGTLER T0316 219 :PGRMMTV 1d2eA 286 :KGDECEF T0316 226 :DGRDMGEHAGLMYY 1d2eA 328 :GLKREDLRRGLVMA T0316 250 :GGQHGGDNA 1d2eA 342 :KPGSIQPHQ T0316 259 :PWFVVGKDLSKN 1d2eA 352 :VEAQVYILTKEE T0316 276 :QGFYHDSLMSTSLEASQVHF 1d2eA 364 :GGRHKPFVSHFMPVMFSLTW T0316 317 :DSKVTVHVKGE 1d2eA 384 :DMACRIILPPG T0316 328 :KTEVIFAE 1d2eA 405 :KLTLILRQ T0316 337 :QRAITPGQAVVFYDGEECLGGGLIDNAYRDGQVC 1d2eA 413 :PMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEED Number of specific fragments extracted= 21 number of extra gaps= 0 total=1266 Number of alignments=79 # 1d2eA read from 1d2eA/merged-good-all-a2m # found chain 1d2eA in template set T0316 7 :TRVVVGM 1d2eA 145 :DGCILVV T0316 19 :SSVTALLLKEQGYD 1d2eA 161 :TREHLLLARQIGVE T0316 33 :VIGIFM 1d2eA 176 :VVVYVN T0316 46 :ENGVCTATEDYKDVVAVADQI 1d2eA 182 :KADAVQDSEMVELVELEIREL T0316 67 :GIPYYSVNFE 1d2eA 212 :ETPIIVGSAL T0316 90 :EYRAGRTP 1d2eA 222 :CALEQRDP T0316 102 :MCNKEI 1d2eA 230 :ELGLKS T0316 109 :FKAFLDYAITL 1d2eA 236 :VQKLLDAVDTY T0316 133 :ARD 1d2eA 248 :PVP T0316 137 :DG 1d2eA 251 :TR T0316 140 :VHMLRG 1d2eA 277 :GTLERG T0316 192 :KKKDSTGICFIGE 1d2eA 283 :ILKKGDECEFLGH T0316 220 :GRMMTV 1d2eA 296 :SKNIRT T0316 226 :DGRDMGEHA 1d2eA 309 :FHKSLDRAE T0316 235 :GLMYYTIGQRG 1d2eA 321 :NLGALVRGLKR T0316 246 :GLG 1d2eA 333 :DLR T0316 249 :IGGQHGGDN 1d2eA 339 :VMAKPGSIQ T0316 264 :GKDLSKNILYVGQG 1d2eA 348 :PHQKVEAQVYILTK T0316 296 :TREMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1d2eA 363 :EGGRHKPFVSHFMPVMFSLTWDMACRIILPPG T0316 328 :KTEVIFAEPQRAI 1d2eA 405 :KLTLILRQPMILE T0316 342 :PGQAVVFYDGEECLGGGLIDNAY 1d2eA 418 :KGQRFTLRDGNRTIGTGLVTDTP Number of specific fragments extracted= 21 number of extra gaps= 0 total=1287 Number of alignments=80 # 1d2eA read from 1d2eA/merged-good-all-a2m # found chain 1d2eA in template set T0316 7 :TRVVVGMSG 1d2eA 145 :DGCILVVAA T0316 19 :SSVTALLLKEQGYD 1d2eA 161 :TREHLLLARQIGVE T0316 33 :VIGIFMKNWDDTDE 1d2eA 176 :VVVYVNKADAVQDS T0316 52 :ATEDYKDVVAVADQIGIP 1d2eA 192 :VELVELEIRELLTEFGYK T0316 70 :YYSVNFE 1d2eA 215 :IIVGSAL T0316 90 :EYRAGRTPNP 1d2eA 222 :CALEQRDPEL T0316 105 :KEIKFKAFLDYAIT 1d2eA 232 :GLKSVQKLLDAVDT T0316 119 :LGAD 1d2eA 254 :LEKP T0316 132 :VARDEDGTVHMLRGVDN 1d2eA 265 :VYSIPGRGTVVTGTLER T0316 189 :STAKKKD 1d2eA 282 :GILKKGD T0316 198 :GICFIGE 1d2eA 289 :ECEFLGH T0316 218 :QPGRMMT 1d2eA 299 :IRTVVTG T0316 225 :VDGRDMGEHA 1d2eA 308 :MFHKSLDRAE T0316 236 :LMY 1d2eA 322 :LGA T0316 243 :QRGGLGIGGQHG 1d2eA 325 :LVRGLKREDLRR T0316 255 :GDNAPWFVVG 1d2eA 344 :GSIQPHQKVE T0316 270 :NILYVGQGFYH 1d2eA 354 :AQVYILTKEEG T0316 294 :HFTREMPEEFTLECTA 1d2eA 365 :GRHKPFVSHFMPVMFS T0316 316 :PDSKVTVHVKGEK 1d2eA 383 :WDMACRIILPPGK T0316 329 :TEVIFAEPQ 1d2eA 406 :LTLILRQPM T0316 339 :AITPGQAVVFYDGEECLGGGLIDNA 1d2eA 415 :ILEKGQRFTLRDGNRTIGTGLVTDT Number of specific fragments extracted= 21 number of extra gaps= 0 total=1308 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c78A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c78A expands to /projects/compbio/data/pdb/2c78.pdb.gz 2c78A:# T0316 read from 2c78A/merged-good-all-a2m # 2c78A read from 2c78A/merged-good-all-a2m # adding 2c78A to template set # found chain 2c78A in template set T0316 6 :KTRVVVGMS 2c78A 99 :MDGAILVVS T0316 19 :SSVTALLLKEQGYD 2c78A 116 :TREHILLARQVGVP T0316 33 :VIGIFM 2c78A 131 :IVVFMN T0316 46 :ENGVCTATEDYKD 2c78A 137 :KVDMVDDPELLDL T0316 59 :VVAVADQIGIP 2c78A 154 :VRDLLNQYEFP T0316 70 :YYSVNFE 2c78A 168 :VPVIRGS T0316 109 :FKAFLDYAIT 2c78A 175 :ALLALEQMHR T0316 134 :R 2c78A 185 :N T0316 154 :YFLSQLSQEQL 2c78A 186 :PKTRRGENEWV T0316 177 :PEVRRLAEEAG 2c78A 197 :DKIWELLDAID T0316 188 :LSTAKKK 2c78A 210 :IPTPVRD T0316 195 :DSTGICFIG 2c78A 218 :DKPFLMPVE T0316 221 :RMMTV 2c78A 227 :DVFTI T0316 226 :DGRDMGEHAGLMYYTIGQR 2c78A 252 :EVEIVGLAPETRKTVVTGV T0316 245 :GGL 2c78A 275 :KTL T0316 255 :GDNA 2c78A 278 :QEGI T0316 259 :PWFVVGK 2c78A 286 :VGVLLRG T0316 266 :DLSKNILYVGQGFY 2c78A 297 :EVERGQVLAKPGSI T0316 300 :PEEFTLECTA 2c78A 311 :TPHTKFEASV T0316 310 :KFRYRQPDSKVTVHVKGE 2c78A 341 :QFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAE 2c78A 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 2c78A 377 :PVALEEGLRFAIREGGRTVGAGVVT Number of specific fragments extracted= 22 number of extra gaps= 0 total=1330 Number of alignments=82 # 2c78A read from 2c78A/merged-good-all-a2m # found chain 2c78A in template set Warning: unaligning (T0316)R365 because last residue in template chain is (2c78A)E405 T0316 5 :SKTRVVVGMS 2c78A 98 :QMDGAILVVS T0316 19 :SSVTALLLKEQGYD 2c78A 116 :TREHILLARQVGVP T0316 33 :VIGIFM 2c78A 131 :IVVFMN T0316 46 :ENGVCTATEDY 2c78A 137 :KVDMVDDPELL T0316 57 :KDVVAVADQIGIP 2c78A 152 :MEVRDLLNQYEFP T0316 70 :YYSVNFE 2c78A 168 :VPVIRGS T0316 84 :FEYFLAEYRA 2c78A 175 :ALLALEQMHR T0316 94 :GRTPNP 2c78A 186 :PKTRRG T0316 104 :NKEI 2c78A 192 :ENEW T0316 109 :FKAFLDYAITL 2c78A 196 :VDKIWELLDAI T0316 131 :RVARD 2c78A 207 :DEYIP T0316 137 :DG 2c78A 212 :TP T0316 139 :TVHMLRG 2c78A 239 :TGRIERG T0316 192 :KKKDSTGICFIGE 2c78A 246 :KVKVGDEVEIVGL T0316 218 :QPGRMMTV 2c78A 259 :APETRKTV T0316 226 :DGRDMGEH 2c78A 273 :HRKTLQEG T0316 234 :AG 2c78A 282 :AG T0316 236 :LMYYTIGQRG 2c78A 286 :VGVLLRGVSR T0316 246 :GL 2c78A 297 :EV T0316 248 :GIGGQHGGD 2c78A 302 :QVLAKPGSI T0316 263 :VGKDLSKNILYVGQG 2c78A 311 :TPHTKFEASVYVLKK T0316 298 :EMPEEFTLECTAKFRYRQPDSKVTVHVKGE 2c78A 329 :GRHTGFFSGYRPQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAEPQR 2c78A 369 :TFTVELIKPVA T0316 340 :ITPGQAVVFYDGEECLGGGLIDNAY 2c78A 380 :LEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 24 number of extra gaps= 0 total=1354 Number of alignments=83 # 2c78A read from 2c78A/merged-good-all-a2m # found chain 2c78A in template set T0316 7 :TRVVVGMSG 2c78A 100 :DGAILVVSA T0316 17 :VDSSVTALLLKEQGYDVIGIFMKNWDD 2c78A 114 :PQTREHILLARQVGVPYIVVFMNKVDM T0316 44 :TDE 2c78A 142 :DDP T0316 52 :ATEDYKDVVAVADQIGIP 2c78A 147 :LDLVEMEVRDLLNQYEFP T0316 71 :YSVNFEKEYWDRVFE 2c78A 170 :VIRGSALLALEQMHR T0316 98 :NPDVMCNKEI 2c78A 185 :NPKTRRGENE T0316 108 :KFKAFLDYAIT 2c78A 198 :KIWELLDAIDE T0316 121 :AD 2c78A 217 :VD T0316 130 :AR 2c78A 222 :LM T0316 132 :VARDEDGTVHMLRGVDNG 2c78A 228 :VFTITGRGTVATGRIERG T0316 192 :KKKDSTGICFIGE 2c78A 246 :KVKVGDEVEIVGL T0316 214 :YLPAQPGRMMT 2c78A 259 :APETRKTVVTG T0316 225 :VDGRDMGEHAGLMYYTI 2c78A 272 :MHRKTLQEGIAGDNVGV T0316 243 :QRGGLGIGG 2c78A 289 :LLRGVSREE T0316 267 :LSKNILYVGQGF 2c78A 298 :VERGQVLAKPGS T0316 285 :STS 2c78A 313 :HTK T0316 288 :LEASQVHFTREMPEEFTL 2c78A 323 :LKKEEGGRHTGFFSGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 2c78A 341 :QFYFRTTDVTGVVQLPPGV T0316 329 :TEVIFAEPQ 2c78A 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 2c78A 379 :ALEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 20 number of extra gaps= 0 total=1374 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1k92A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1k92A/merged-good-all-a2m # 1k92A read from 1k92A/merged-good-all-a2m # found chain 1k92A in training set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1k92A 8 :PVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTA T0316 46 :ENGVC 1k92A 43 :NLGQP T0316 52 :ATEDYKDVVAVADQIGI 1k92A 48 :DEEDYDAIPRRAMEYGA T0316 69 :PYYSVNFEKEYWDRVFEYFL 1k92A 66 :NARLIDCRKQLVAEGIAAIQ T0316 94 :GR 1k92A 94 :GG T0316 96 :TPNPDVMCNK 1k92A 98 :YFNTTPLGRA T0316 107 :IKFKAFLDYAITLGAD 1k92A 108 :VTGTMLVAAMKEDGVN T0316 125 :ATGHYARVARDEDGTVHMLR 1k92A 124 :IWGDGSTYKGNDIERFYRYG T0316 146 :VDNGKDQTYFLSQLSQE 1k92A 144 :LLTNAELQIYKPWLDTD T0316 167 :TMFPLG 1k92A 161 :FIDELG T0316 175 :EKPEVRRLAEEAGLST 1k92A 167 :GRHEMSEFMIACGFDY T0316 191 :AKKK 1k92A 186 :VEKA T0316 195 :DSTGICFIGEKNFKNF 1k92A 194 :SNMLGATHEAKDLEYL T0316 211 :LSNY 1k92A 213 :VKIV T0316 282 :SLMSTSL 1k92A 346 :SLQRWVA T0316 314 :RQPDSKVTVHVKGEK 1k92A 353 :SQITGEVTLELRRGN T0316 329 :TEVIFAEPQRAITPG 1k92A 369 :YSILNTVSENLTYKP Number of specific fragments extracted= 17 number of extra gaps= 0 total=1391 Number of alignments=85 # 1k92A read from 1k92A/merged-good-all-a2m # found chain 1k92A in training set T0316 3 :DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1k92A 7 :LPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTA T0316 46 :ENGVC 1k92A 43 :NLGQP T0316 52 :ATEDYKDVVAVADQIGI 1k92A 48 :DEEDYDAIPRRAMEYGA T0316 69 :PYYSVNFEKEYWDRV 1k92A 66 :NARLIDCRKQLVAEG T0316 88 :LAEYRAGRTPNPD 1k92A 81 :IAAIQCGAFHNTT T0316 101 :VMCNKEIKFKAFLDYAITLGADYVATG 1k92A 102 :TPLGRAVTGTMLVAAMKEDGVNIWGDG T0316 132 :VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF 1k92A 129 :STYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELG T0316 175 :EKPEVRRLAEEAGLST 1k92A 167 :GRHEMSEFMIACGFDY T0316 191 :AKKKDSTGICFIGEKNFKNFLSNYLPAQP 1k92A 186 :VEKAYSTDSNMLGATHEAKDLEYLNSSVK T0316 220 :GRMMTVDGRDMGEHAGLMYYTIGQRGG 1k92A 228 :SVKIPAEEVTVRFEQGHPVALNGKTFS T0316 282 :SLMSTSLEASQVHF 1k92A 255 :DDVEMMLEANRIGG T0316 305 :LECTAKFRYRQPDSKVTVH 1k92A 274 :MSDQIENRIIEAKSRGIYE Number of specific fragments extracted= 12 number of extra gaps= 0 total=1403 Number of alignments=86 # 1k92A read from 1k92A/merged-good-all-a2m # found chain 1k92A in training set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD 1k92A 8 :PVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQP T0316 52 :ATEDYKDVVAVADQIGI 1k92A 48 :DEEDYDAIPRRAMEYGA T0316 69 :PYYSVNFEKE 1k92A 66 :NARLIDCRKQ T0316 83 :VFEYFLAEYRAGRTPN 1k92A 76 :LVAEGIAAIQCGAFHN T0316 107 :IKFKAFLDYAITLGADYVATGH 1k92A 108 :VTGTMLVAAMKEDGVNIWGDGS T0316 135 :DED 1k92A 130 :TYK T0316 149 :GKDQTYFLSQLS 1k92A 148 :AELQIYKPWLDT T0316 166 :KTMFPLG 1k92A 160 :DFIDELG T0316 175 :EKPEVRRLAEEAGLSTAKKKDS 1k92A 167 :GRHEMSEFMIACGFDYKMSVEK T0316 226 :DGRDMGEHAGLMYY 1k92A 189 :AYSTDSNMLGATHE T0316 280 :HDSLMSTSLEASQVHFTREMP 1k92A 203 :AKDLEYLNSSVKIVNPIMGVK T0316 301 :EEFTL 1k92A 227 :ESVKI T0316 316 :PDSKVTVHVKGEKTEV 1k92A 232 :PAEEVTVRFEQGHPVA Number of specific fragments extracted= 13 number of extra gaps= 0 total=1416 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vl2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1vl2A/merged-good-all-a2m # 1vl2A read from 1vl2A/merged-good-all-a2m # found chain 1vl2A in training set Warning: unaligning (T0316)K6 because first residue in template chain is (1vl2A)K2 Warning: unaligning (T0316)P97 because of BadResidue code BAD_PEPTIDE in next template residue (1vl2A)L87 Warning: unaligning (T0316)N98 because of BadResidue code BAD_PEPTIDE at template residue (1vl2A)L87 Warning: unaligning (T0316)L174 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vl2A)T156 Warning: unaligning (T0316)P177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vl2A)T156 Warning: unaligning (T0316)C200 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vl2A)I186 Warning: unaligning (T0316)G343 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vl2A)G379 Warning: unaligning (T0316)E352 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vl2A)G379 T0316 7 :TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1vl2A 3 :EKVVLAYSGGLDTSVILKWLCEKGFDVIAYVA T0316 46 :ENG 1vl2A 35 :NVG T0316 52 :ATEDYKDVVAVADQIGI 1vl2A 38 :QKDDFVAIKEKALKTGA T0316 69 :PYYSVNFEKEYWDRVFEYFL 1vl2A 56 :KVYVEDLRREFVTDYIFTAL T0316 92 :RAGRT 1vl2A 81 :YEGRY T0316 99 :PDVMCNKEI 1vl2A 88 :GTAIARPLI T0316 109 :FKAFLDYAITLGADYVATGHYA 1vl2A 97 :AKRQVEIAEKEGAQYVAHGATG T0316 134 :RDEDG 1vl2A 119 :KGNDQ T0316 139 :TVHM 1vl2A 125 :RFEL T0316 143 :LRGV 1vl2A 130 :YAAL T0316 149 :GKDQTYFLSQLSQEQLQKT 1vl2A 134 :NPNLKVISPWKDPEFLAKF T0316 178 :EVRRLAEEAGLSTAKKK 1vl2A 157 :DLINYAMEKGIPIKVSK T0316 195 :DSTGI 1vl2A 175 :RPYSE T0316 201 :FIGEKNF 1vl2A 187 :SHEAGKL T0316 208 :KNFLSNYLPAQP 1vl2A 202 :EDVFTWTVSPKD T0316 220 :GRMMTV 1vl2A 216 :DEETLL T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGIG 1vl2A 251 :YLNEVGAKNGVGRLDMVENRFIGIK T0316 259 :PWFVVGK 1vl2A 276 :SRGVYET T0316 278 :FYHDSLMSTSLEASQVHFTRE 1vl2A 306 :HLRDMLAPKFAELIYNGFWFS T0316 300 :PE 1vl2A 327 :PE T0316 313 :YRQPDSKVTVHVKGEKTEVIFAEPQRAITP 1vl2A 340 :QENVTGKVTVSIYKGNVMPVARYSPYSLYN T0316 353 :EC 1vl2A 380 :GF Number of specific fragments extracted= 22 number of extra gaps= 2 total=1438 Number of alignments=88 # 1vl2A read from 1vl2A/merged-good-all-a2m # found chain 1vl2A in training set Warning: unaligning (T0316)K6 because first residue in template chain is (1vl2A)K2 Warning: unaligning (T0316)P97 because of BadResidue code BAD_PEPTIDE in next template residue (1vl2A)L87 Warning: unaligning (T0316)N98 because of BadResidue code BAD_PEPTIDE at template residue (1vl2A)L87 Warning: unaligning (T0316)F169 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vl2A)T156 Warning: unaligning (T0316)P177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vl2A)T156 Warning: unaligning (T0316)G203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vl2A)I186 Warning: unaligning (T0316)E204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vl2A)I186 Warning: unaligning (T0316)G367 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vl2A)G379 T0316 7 :TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1vl2A 3 :EKVVLAYSGGLDTSVILKWLCEKGFDVIAYVA T0316 46 :ENG 1vl2A 35 :NVG T0316 52 :ATEDYKDVVAVADQIGI 1vl2A 38 :QKDDFVAIKEKALKTGA T0316 69 :PYYSVNFEKEYWDRVFEYFL 1vl2A 56 :KVYVEDLRREFVTDYIFTAL T0316 91 :YRAGRT 1vl2A 80 :MYEGRY T0316 99 :PDVMCNKEI 1vl2A 88 :GTAIARPLI T0316 109 :FKAFLDYAITLGADYVATG 1vl2A 97 :AKRQVEIAEKEGAQYVAHG T0316 132 :VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTM 1vl2A 116 :ATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKF T0316 178 :EVRRLAEEAGLST 1vl2A 157 :DLINYAMEKGIPI T0316 191 :AKKKDSTGICFI 1vl2A 173 :KKRPYSEDENLM T0316 205 :KNFKNFLSNYLPAQPGRMM 1vl2A 187 :SHEAGKLEDPAHIPDEDVF T0316 248 :GIGGQHGGDNAPWFVVGKDLSKNILYVGQG 1vl2A 206 :TWTVSPKDAPDEETLLEIHFENGIPVKVVN T0316 278 :FYHDSLMSTSLEASQVHF 1vl2A 240 :TEKTDPLELFEYLNEVGA T0316 296 :T 1vl2A 261 :V T0316 304 :TLECTAKFRYRQPDSKVTVH 1vl2A 262 :GRLDMVENRFIGIKSRGVYE T0316 338 :RAIT 1vl2A 341 :ENVT T0316 343 :GQAVV 1vl2A 345 :GKVTV T0316 348 :FYDGEECLGGGLIDNAYRD 1vl2A 351 :IYKGNVMPVARYSPYSLYN Number of specific fragments extracted= 18 number of extra gaps= 2 total=1456 Number of alignments=89 # 1vl2A read from 1vl2A/merged-good-all-a2m # found chain 1vl2A in training set Warning: unaligning (T0316)K6 because first residue in template chain is (1vl2A)K2 Warning: unaligning (T0316)P97 because of BadResidue code BAD_PEPTIDE in next template residue (1vl2A)L87 Warning: unaligning (T0316)N98 because of BadResidue code BAD_PEPTIDE at template residue (1vl2A)L87 Warning: unaligning (T0316)L174 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vl2A)T156 Warning: unaligning (T0316)P177 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vl2A)T156 Warning: unaligning (T0316)L236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vl2A)I186 Warning: unaligning (T0316)M237 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vl2A)I186 T0316 7 :TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWD 1vl2A 3 :EKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQ T0316 53 :TEDYKDVVAVADQIGI 1vl2A 39 :KDDFVAIKEKALKTGA T0316 69 :PYYSVNFEKEYWDR 1vl2A 56 :KVYVEDLRREFVTD T0316 83 :VFEY 1vl2A 71 :IFTA T0316 92 :R 1vl2A 75 :L T0316 93 :AGRT 1vl2A 82 :EGRY T0316 99 :PDVMCN 1vl2A 88 :GTAIAR T0316 106 :EIKFKAFLDYAITLGADYVATGH 1vl2A 94 :PLIAKRQVEIAEKEGAQYVAHGA T0316 135 :DED 1vl2A 117 :TGK T0316 156 :LSQLSQEQLQKT 1vl2A 141 :SPWKDPEFLAKF T0316 178 :EVRRLAEEAGLSTAKKK 1vl2A 157 :DLINYAMEKGIPIKVSK T0316 217 :AQPGRMM 1vl2A 174 :KRPYSED T0316 232 :EHAG 1vl2A 181 :ENLM T0316 238 :YYTIGQ 1vl2A 187 :SHEAGK T0316 252 :QHGGDNA 1vl2A 193 :LEDPAHI T0316 288 :LEASQVHFTREMPE 1vl2A 200 :PDEDVFTWTVSPKD T0316 302 :EFTLECTAKFR 1vl2A 216 :DEETLLEIHFE T0316 316 :PDSKVTVHVKGEK 1vl2A 227 :NGIPVKVVNLKDG Number of specific fragments extracted= 18 number of extra gaps= 2 total=1474 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ih8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ih8A expands to /projects/compbio/data/pdb/1ih8.pdb.gz 1ih8A:# T0316 read from 1ih8A/merged-good-all-a2m # 1ih8A read from 1ih8A/merged-good-all-a2m # adding 1ih8A to template set # found chain 1ih8A in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLL 1ih8A 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQG 1ih8A 66 :REEG T0316 31 :YDVIGIFM 1ih8A 72 :AQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 1ih8A 80 :PHGTQQDEDDAQLALKF T0316 66 :IGI 1ih8A 97 :IKP T0316 69 :PYYSVNFEKEY 1ih8A 101 :KSWKFDIKSTV T0316 85 :EYFLAEYRA 1ih8A 112 :SAFSDQYQQ T0316 94 :GRTPNPD 1ih8A 122 :TGDQLTD T0316 103 :C 1ih8A 136 :A T0316 105 :KE 1ih8A 137 :RT T0316 108 :KFKAFLDYAITLGADY 1ih8A 139 :RMIAQYAIGGQEGLLV T0316 126 :TGH 1ih8A 155 :LGT T0316 134 :RDE 1ih8A 158 :DHA T0316 139 :TVHMLRGVDNGKDQTY 1ih8A 161 :AEAVTGFFTKYGDGGA T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 1ih8A 177 :DLLPLTGLTKRQGRTLLKELGAPE T0316 191 :AKKKDSTG 1ih8A 211 :LLDEKPQQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=1490 Number of alignments=91 # 1ih8A read from 1ih8A/merged-good-all-a2m # found chain 1ih8A in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1ih8A 37 :GAKGFVLGISGGQDSTLAGRLAQLA T0316 30 :GYD 1ih8A 69 :GGD T0316 33 :VIGIFM 1ih8A 74 :FIAVRL T0316 46 :ENGVCTATEDYKDVVAVA 1ih8A 80 :PHGTQQDEDDAQLALKFI T0316 67 :GI 1ih8A 98 :KP T0316 69 :PYYSVNFE 1ih8A 101 :KSWKFDIK T0316 78 :EYWDRVFEYFLAEY 1ih8A 109 :STVSAFSDQYQQET T0316 94 :GRTPN 1ih8A 123 :GDQLT T0316 100 :D 1ih8A 128 :D T0316 101 :VMCNK 1ih8A 134 :VKART T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 1ih8A 139 :RMIAQYAIGGQEGLLVLGTDHAAEAVTG T0316 140 :VHMLRGVDNGK 1ih8A 167 :FFTKYGDGGAD T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1ih8A 178 :LLPLTGLTKRQGRTLLKELGAP T0316 190 :TAKKKDSTGI 1ih8A 202 :LYLKEPTADL T0316 202 :IGEKN 1ih8A 212 :LDEKP T0316 207 :FK 1ih8A 220 :DE T0316 209 :NFLSNYLPA 1ih8A 229 :DEIDDYLEG T0316 276 :QGFYHDSLMSTSLEASQVHFTREMP 1ih8A 238 :KEVSAKVSEALEKRYSMTEHKRQVP Number of specific fragments extracted= 18 number of extra gaps= 0 total=1508 Number of alignments=92 # 1ih8A read from 1ih8A/merged-good-all-a2m # found chain 1ih8A in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLK 1ih8A 37 :GAKGFVLGISGGQDSTLAGRLAQ T0316 28 :EQGYDVIGIFMKNWDDTD 1ih8A 67 :EEGGDAQFIAVRLPHGTQ T0316 54 :EDYKDVVAVADQIGI 1ih8A 85 :QDEDDAQLALKFIKP T0316 69 :PYYSVNFEKEYWDRVFEYFLAE 1ih8A 101 :KSWKFDIKSTVSAFSDQYQQET T0316 94 :GRTPN 1ih8A 123 :GDQLT T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVA 1ih8A 135 :KARTRMIAQYAIGGQEGLLVLGTDHAAEAV T0316 145 :GVDNGKDQT 1ih8A 167 :FFTKYGDGG T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 1ih8A 177 :DLLPLTGLTKRQGRTLLKELGAPE T0316 209 :NFL 1ih8A 201 :RLY Number of specific fragments extracted= 9 number of extra gaps= 0 total=1517 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wyuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wyuA expands to /projects/compbio/data/pdb/1wyu.pdb.gz 1wyuA:# T0316 read from 1wyuA/merged-good-all-a2m # 1wyuA read from 1wyuA/merged-good-all-a2m # adding 1wyuA to template set # found chain 1wyuA in template set T0316 21 :VTALLLKEQGYD 1wyuA 140 :GVLLALRETGRM T0316 35 :GIFM 1wyuA 152 :GVLV T0316 46 :ENGV 1wyuA 156 :SQGV T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1wyuA 160 :HPEYRAVLRAYLEAVGAKLLTLPLE T0316 93 :AGRTPNPD 1wyuA 185 :GGRTPLPE T0316 104 :N 1wyuA 210 :A T0316 106 :EIKFKAFLDYAITLGADYVATGHYARV 1wyuA 211 :LEDLGPFAEAAHGAGALFVAVADPLSL T0316 153 :TYFLSQLSQEQLQKTM 1wyuA 331 :AMYLAALGPEGLREVA T0316 177 :PEVRRLAEEA 1wyuA 347 :LKSVEMAHKL T0316 187 :GL 1wyuA 365 :GV T0316 189 :STAKKKDSTGICFIGEKNFKNFLSNYLPA 1wyuA 368 :PFTPKPFFNEFALALPKDPEAVRRALAER T0316 220 :GRMMTVDG 1wyuA 397 :GFHGATPV T0316 252 :QHGGDNAPWFVVGKD 1wyuA 405 :PREYGENLALFAATE Number of specific fragments extracted= 13 number of extra gaps= 0 total=1530 Number of alignments=94 # 1wyuA read from 1wyuA/merged-good-all-a2m # found chain 1wyuA in template set T0316 21 :VTALLLKEQGYD 1wyuA 140 :GVLLALRETGRM T0316 34 :IGIFM 1wyuA 152 :GVLVS T0316 47 :NGV 1wyuA 157 :QGV T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1wyuA 160 :HPEYRAVLRAYLEAVGAKLLTLPLE T0316 93 :AGRTPNPD 1wyuA 185 :GGRTPLPE T0316 101 :VMCNKEIKFKAFLDYAITLGADYVATGHYARVARD 1wyuA 206 :NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL T0316 137 :DG 1wyuA 241 :KP T0316 139 :TVHMLRGVDNGKDQ 1wyuA 296 :RRGFILTLQAREQY T0316 153 :TYFLSQLSQEQLQKTM 1wyuA 331 :AMYLAALGPEGLREVA T0316 177 :PEVRRLAEEA 1wyuA 347 :LKSVEMAHKL T0316 187 :GLS 1wyuA 365 :GVR T0316 190 :TAKKKDSTGICFIGEKNFKNFLSNYLPA 1wyuA 369 :FTPKPFFNEFALALPKDPEAVRRALAER T0316 220 :GRM 1wyuA 397 :GFH T0316 248 :GIGGQHGGDNAPWFVVGKDL 1wyuA 400 :GATPVPREYGENLALFAATE T0316 278 :FYHDSLMSTSLEASQV 1wyuA 421 :HEEEDLLALREALKEV Number of specific fragments extracted= 15 number of extra gaps= 0 total=1545 Number of alignments=95 # 1wyuA read from 1wyuA/merged-good-all-a2m # found chain 1wyuA in template set T0316 20 :SVTALLLKEQGYD 1wyuA 139 :EGVLLALRETGRM T0316 35 :GIFMKNW 1wyuA 152 :GVLVSQG T0316 51 :TATEDYKDVVAVADQIGIPYYSVNFE 1wyuA 159 :VHPEYRAVLRAYLEAVGAKLLTLPLE T0316 93 :AGRTPNPDV 1wyuA 185 :GGRTPLPEV T0316 102 :MCNKEIKFKAFLDYAITLGADYVATGHYARVA 1wyuA 207 :FLGALEDLGPFAEAAHGAGALFVAVADPLSLG T0316 152 :QTYFLSQLSQEQLQKTM 1wyuA 330 :GAMYLAALGPEGLREVA T0316 177 :PEVRRLAEEA 1wyuA 347 :LKSVEMAHKL T0316 187 :GLS 1wyuA 365 :GVR T0316 190 :TAKKKDSTGICFIGEKNFKNFLSNY 1wyuA 369 :FTPKPFFNEFALALPKDPEAVRRAL T0316 245 :GGLGIG 1wyuA 396 :RGFHGA T0316 251 :GQHGGDNAPWFVVG 1wyuA 403 :PVPREYGENLALFA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1556 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xngA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xngA expands to /projects/compbio/data/pdb/1xng.pdb.gz 1xngA:# T0316 read from 1xngA/merged-good-all-a2m # 1xngA read from 1xngA/merged-good-all-a2m # adding 1xngA to template set # found chain 1xngA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1xngA 24 :GFKKVVYGLSGGLDSAVVGVLCQKV T0316 30 :GYDVIGIFM 1xngA 50 :KENAHALLM T0316 46 :ENGVC 1xngA 59 :PSSVS T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFEKEY 1xngA 64 :MPENKTDALNLCEKFSIPYTEYSIAPYD T0316 85 :EYFL 1xngA 92 :AIFS T0316 89 :AEYRA 1xngA 104 :TRKGN T0316 102 :MCNKE 1xngA 109 :FCARL T0316 108 :KFKAFLDYAITLGADYV 1xngA 114 :RMAFLYDYSLKSDSLVI T0316 134 :RDEDGTVHMLRGVDNGKDQTY 1xngA 131 :GTSNKSERMLGYGTLFGDLAC T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 1xngA 152 :AINPIGELFKTEVYELARRLNIPK Number of specific fragments extracted= 10 number of extra gaps= 0 total=1566 Number of alignments=97 # 1xngA read from 1xngA/merged-good-all-a2m # found chain 1xngA in template set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKE 1xngA 23 :RGFKKVVYGLSGGLDSAVVGVLCQK T0316 29 :QGYDVIGIFM 1xngA 49 :FKENAHALLM T0316 46 :ENGVC 1xngA 59 :PSSVS T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1xngA 64 :MPENKTDALNLCEKFSIPYTEYSIA T0316 82 :RVFEYFLAE 1xngA 89 :PYDAIFSSH T0316 92 :RAGR 1xngA 98 :FKDA T0316 98 :NPD 1xngA 102 :SLT T0316 101 :VMCNKE 1xngA 108 :NFCARL T0316 108 :KFKAFLDYAITLGADYV 1xngA 114 :RMAFLYDYSLKSDSLVI T0316 127 :GHYARVA 1xngA 131 :GTSNKSE T0316 136 :EDGTVHMLRGVDNGK 1xngA 138 :RMLGYGTLFGDLACA T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1xngA 153 :INPIGELFKTEVYELARRLNIP T0316 190 :TAKKKDSTGICF 1xngA 177 :ILNKPPSADLFV T0316 202 :IGEKNFKNFLSNYLPAQPGRMMTVD 1xngA 198 :YPYSVIDPLLKDIEALFQTKPIDTE T0316 277 :GFYHDSLMSTSLEASQVHFTREMP 1xngA 228 :GYDEILVKNITSRIQKNAFKLELP Number of specific fragments extracted= 15 number of extra gaps= 0 total=1581 Number of alignments=98 # 1xngA read from 1xngA/merged-good-all-a2m # found chain 1xngA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1xngA 24 :GFKKVVYGLSGGLDSAVVGVLCQKV T0316 31 :YDVIGIFMKNWD 1xngA 51 :ENAHALLMPSSV T0316 51 :TATEDYKDVVAVADQIGIPYYSVNFEKEYWDR 1xngA 63 :SMPENKTDALNLCEKFSIPYTEYSIAPYDAIF T0316 84 :FEYFLAEYR 1xngA 103 :LTRKGNFCA T0316 106 :EIKFKAFLDYAITLGADYVATGH 1xngA 112 :RLRMAFLYDYSLKSDSLVIGTSN T0316 151 :DQTYFLSQLSQE 1xngA 135 :KSERMLGYGTLF T0316 170 :PLGHLEKPEVRRLAEEAGLS 1xngA 155 :PIGELFKTEVYELARRLNIP Number of specific fragments extracted= 7 number of extra gaps= 0 total=1588 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q15A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q15A expands to /projects/compbio/data/pdb/1q15.pdb.gz 1q15A:# T0316 read from 1q15A/merged-good-all-a2m # 1q15A read from 1q15A/merged-good-all-a2m # adding 1q15A to template set # found chain 1q15A in template set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1q15A 236 :PRFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSI T0316 46 :ENGVCT 1q15A 271 :GTELSN T0316 55 :DYKDVVAVADQIGIPYYSVNFEK 1q15A 277 :EFEFSQQVADALGTHHQMKILSE T0316 81 :DRVFEYFLAEYRAGRTP 1q15A 300 :TEVINGIIESIYYNEIF T0316 102 :MCNKEIKFKAFLDYAITL 1q15A 317 :DGLSAEIQSGLFNVYRQA T0316 120 :GADYVATG 1q15A 337 :QVSCMLTG T0316 128 :HYA 1q15A 353 :GIL T0316 134 :RDEDGT 1q15A 356 :KPGAQY Number of specific fragments extracted= 8 number of extra gaps= 0 total=1596 Number of alignments=100 # 1q15A read from 1q15A/merged-good-all-a2m # found chain 1q15A in template set Warning: unaligning (T0316)K192 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q15A)S451 Warning: unaligning (T0316)I202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q15A)S451 T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFM 1q15A 236 :PRFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSI T0316 46 :ENG 1q15A 271 :GTE T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1q15A 274 :LSNEFEFSQQVADALGTHHQMKILS T0316 80 :WDRVFEYFLAEYRAGRTPNPDVMCNKE 1q15A 299 :ETEVINGIIESIYYNEIFDGLSAEIQS T0316 108 :KFKAFLDYAITL 1q15A 326 :GLFNVYRQAQGQ T0316 121 :ADYVATGHYARVARDE 1q15A 338 :VSCMLTGYGSDLLFGG T0316 137 :DGT 1q15A 356 :KPG T0316 147 :DNGK 1q15A 359 :AQYD T0316 155 :FLSQLSQEQLQK 1q15A 363 :NPNQLLAEQVYR T0316 167 :TMFPL 1q15A 393 :IRHPF T0316 174 :LEKPEV 1q15A 398 :WSHSLI T0316 180 :RRLAEEAGL 1q15A 425 :REYADSLQL T0316 189 :S 1q15A 435 :P T0316 190 :TA 1q15A 439 :VW T0316 203 :GEKNFKNFLSNYLP 1q15A 452 :VNQAFANVLGSTVD Number of specific fragments extracted= 15 number of extra gaps= 0 total=1611 Number of alignments=101 # 1q15A read from 1q15A/merged-good-all-a2m # found chain 1q15A in template set T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDT 1q15A 236 :PRFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTELSN T0316 55 :DYKDVVAVADQIGIPYYSVNFEKE 1q15A 277 :EFEFSQQVADALGTHHQMKILSET T0316 82 :RVFEYFLAEYRAGRTPN 1q15A 301 :EVINGIIESIYYNEIFD T0316 108 :KFKAFLDYAIT 1q15A 323 :IQSGLFNVYRQ T0316 119 :LGADYVATGHY 1q15A 336 :GQVSCMLTGYG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1616 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kqpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1kqpA/merged-good-all-a2m # 1kqpA read from 1kqpA/merged-good-all-a2m # found chain 1kqpA in training set Warning: unaligning (T0316)R95 because of BadResidue code BAD_PEPTIDE in next template residue (1kqpA)D124 Warning: unaligning (T0316)T96 because of BadResidue code BAD_PEPTIDE at template residue (1kqpA)D124 T0316 5 :SKTRVVVGMSGGVDSSVTALLL 1kqpA 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQG 1kqpA 66 :REEG T0316 31 :YDVIGIFM 1kqpA 72 :AQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 1kqpA 80 :PHGTQQDEDDAQLALKF T0316 66 :IGI 1kqpA 97 :IKP T0316 69 :PYYSVNFEKEY 1kqpA 101 :KSWKFDIKSTV T0316 85 :EYFLAEYRA 1kqpA 112 :SAFSDQYQQ T0316 94 :G 1kqpA 122 :T T0316 97 :PNPD 1kqpA 125 :QLTD T0316 104 :NKE 1kqpA 136 :ART T0316 108 :KFKAFLDYAITLGADYVATGHY 1kqpA 139 :RMIAQYAIGGQEGLLVLGTDHA T0316 139 :TVHMLRGVDNGKDQTY 1kqpA 161 :AEAVTGFFTKYGDGGA T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 1kqpA 177 :DLLPLTGLTKRQGRTLLKELGAPE T0316 191 :AKKKDSTG 1kqpA 211 :LLDEKPQQ Number of specific fragments extracted= 14 number of extra gaps= 1 total=1630 Number of alignments=103 # 1kqpA read from 1kqpA/merged-good-all-a2m # found chain 1kqpA in training set Warning: unaligning (T0316)G94 because of BadResidue code BAD_PEPTIDE in next template residue (1kqpA)D124 Warning: unaligning (T0316)R95 because of BadResidue code BAD_PEPTIDE at template residue (1kqpA)D124 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1kqpA 37 :GAKGFVLGISGGQDSTLAGRLAQLA T0316 30 :GYDVIGIFMKN 1kqpA 69 :GGDAQFIAVRL T0316 46 :ENGVCTATEDYKDVVAVA 1kqpA 80 :PHGTQQDEDDAQLALKFI T0316 67 :GI 1kqpA 98 :KP T0316 69 :PYYSVNFE 1kqpA 101 :KSWKFDIK T0316 78 :EYWDRVFEYFLAEY 1kqpA 109 :STVSAFSDQYQQET T0316 96 :TPN 1kqpA 125 :QLT T0316 100 :D 1kqpA 128 :D T0316 101 :VM 1kqpA 134 :VK T0316 104 :NKE 1kqpA 136 :ART T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 1kqpA 139 :RMIAQYAIGGQEGLLVLGTDHAAEAVTG T0316 140 :VHMLRGVDNGK 1kqpA 167 :FFTKYGDGGAD T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1kqpA 178 :LLPLTGLTKRQGRTLLKELGAP T0316 190 :TAKKKDSTGI 1kqpA 208 :TADLLDEKPQ T0316 202 :IGEKNFK 1kqpA 218 :QSDETEL T0316 209 :NFLSNYLPAQ 1kqpA 229 :DEIDDYLEGK T0316 277 :GFYHDSLMSTSLEASQVHFTREMPEE 1kqpA 239 :EVSAKVSEALEKRYSMTEHKRQVPAS Number of specific fragments extracted= 17 number of extra gaps= 1 total=1647 Number of alignments=104 # 1kqpA read from 1kqpA/merged-good-all-a2m # found chain 1kqpA in training set Warning: unaligning (T0316)G94 because of BadResidue code BAD_PEPTIDE in next template residue (1kqpA)D124 Warning: unaligning (T0316)R95 because of BadResidue code BAD_PEPTIDE at template residue (1kqpA)D124 T0316 5 :SKTRVVVGMSGGVDSSVTALLLK 1kqpA 37 :GAKGFVLGISGGQDSTLAGRLAQ T0316 28 :EQGYDVIGIFMKNWDDTD 1kqpA 67 :EEGGDAQFIAVRLPHGTQ T0316 54 :EDYKDVVAVADQIGI 1kqpA 85 :QDEDDAQLALKFIKP T0316 69 :PYYSVNFEKEYWDRVFEYFLAE 1kqpA 101 :KSWKFDIKSTVSAFSDQYQQET T0316 96 :TPN 1kqpA 125 :QLT T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVARD 1kqpA 135 :KARTRMIAQYAIGGQEGLLVLGTDHAAEAVTG T0316 145 :GVDNGKDQTY 1kqpA 167 :FFTKYGDGGA T0316 167 :TMFPLGHLEKPEVRRLAEEAGLS 1kqpA 177 :DLLPLTGLTKRQGRTLLKELGAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=1655 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dv1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dv1A expands to /projects/compbio/data/pdb/1dv1.pdb.gz 1dv1A:Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 3132, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 3134, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 3136, because occupancy 0.500 <= existing 0.500 in 1dv1A Skipped atom 3138, because occupancy 0.500 <= existing 0.500 in 1dv1A # T0316 read from 1dv1A/merged-good-all-a2m # 1dv1A read from 1dv1A/merged-good-all-a2m # adding 1dv1A to template set # found chain 1dv1A in template set Warning: unaligning (T0316)V225 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dv1A)M169 T0316 7 :TRVVVG 1dv1A 3 :DKIVIA T0316 19 :SSVTALLLKEQGYDVIGIFM 1dv1A 14 :ALRILRACKELGIKTVAVHS T0316 46 :E 1dv1A 34 :S T0316 52 :ATEDYKDVVA 1dv1A 35 :ADRDLKHVLL T0316 71 :YSVNFE 1dv1A 47 :ETVCIG T0316 97 :PNPDVMCNKEI 1dv1A 53 :PAPSVKSYLNI T0316 110 :KAFLDYAITLGADYVATGH 1dv1A 64 :PAIISAAEITGAVAIHPGY T0316 134 :RDEDGTVHM 1dv1A 83 :GFLSENANF T0316 143 :L 1dv1A 97 :R T0316 152 :QTYFLSQLSQEQLQKTM 1dv1A 98 :SGFIFIGPKAETIRLMG T0316 175 :EKPEVRRLAEEAGLSTAKKKDS 1dv1A 115 :DKVSAIAAMKKAGVPCVPGSDG T0316 199 :I 1dv1A 137 :P T0316 202 :IGE 1dv1A 138 :LGD T0316 205 :KNFKNFLSNY 1dv1A 143 :DKNRAIAKRI T0316 215 :LPA 1dv1A 154 :YPV T0316 221 :RMMT 1dv1A 157 :IIKA T0316 226 :DGRDMGEHAGLMYYTIG 1dv1A 197 :MVYMEKYLENPRHVEIQ T0316 322 :VHVK 1dv1A 214 :VLAD T0316 326 :GEKTEVIFAEPQRAITPGQAVVFYD 1dv1A 219 :QGNAIYLAERDCSMQRRHQKVVEEA Number of specific fragments extracted= 19 number of extra gaps= 0 total=1674 Number of alignments=106 # 1dv1A read from 1dv1A/merged-good-all-a2m # found chain 1dv1A in template set Warning: unaligning (T0316)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dv1A)M169 Warning: unaligning (T0316)Q218 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dv1A)N195 T0316 7 :TRVVVG 1dv1A 3 :DKIVIA T0316 19 :SSVTALLLKEQGYDVIGIFM 1dv1A 14 :ALRILRACKELGIKTVAVHS T0316 44 :TDENGV 1dv1A 34 :SADRDL T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1dv1A 59 :SYLNIPAIISAAEITGAVAIHPGYG T0316 77 :KEYWDRV 1dv1A 89 :ANFAEQV T0316 92 :RAGRT 1dv1A 96 :ERSGF T0316 99 :PDVMCNKEI 1dv1A 101 :IFIGPKAET T0316 109 :FKAF 1dv1A 110 :IRLM T0316 113 :LDYAITLGAD 1dv1A 120 :IAAMKKAGVP T0316 132 :V 1dv1A 130 :C T0316 137 :DGTV 1dv1A 131 :VPGS T0316 146 :VDNGK 1dv1A 135 :DGPLG T0316 174 :LEKPEVRRLAEEAGLS 1dv1A 140 :DDMDKNRAIAKRIGYP T0316 190 :TAKK 1dv1A 157 :IIKA T0316 201 :FIGEKNFKNFLSNYLPA 1dv1A 172 :VRGDAELAQSISMTRAE T0316 220 :GRMMTVDGRDMG 1dv1A 220 :GNAIYLAERDCS T0316 232 :EHAGLMYYTIGQRGGL 1dv1A 233 :QRRHQKVVEEAPAPGI T0316 279 :YHDSLMSTSLE 1dv1A 249 :TPELRRYIGER T0316 290 :ASQVHFTR 1dv1A 261 :AKACVDIG T0316 337 :QRAI 1dv1A 269 :YRGA T0316 343 :GQAVVFYDGEECLGGGLI 1dv1A 273 :GTFEFLFENGEFYFIEMN Number of specific fragments extracted= 21 number of extra gaps= 0 total=1695 Number of alignments=107 # 1dv1A read from 1dv1A/merged-good-all-a2m # found chain 1dv1A in template set Warning: unaligning (T0316)D135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dv1A)M169 T0316 8 :RVVVG 1dv1A 4 :KIVIA T0316 14 :SGGVDSSVTALLLKEQGYDVIGIFMKNWDD 1dv1A 9 :NRGEIALRILRACKELGIKTVAVHSSADRD T0316 44 :TDEN 1dv1A 55 :PSVK T0316 52 :ATEDYKDVVAVADQIGIPYYSVNF 1dv1A 59 :SYLNIPAIISAAEITGAVAIHPGY T0316 76 :EKEYWDRVFE 1dv1A 88 :NANFAEQVER T0316 86 :YFLAEYRAGRTP 1dv1A 118 :SAIAAMKKAGVP T0316 98 :NPDVMCNKEIKFKAFLDYAITLGAD 1dv1A 131 :VPGSDGPLGDDMDKNRAIAKRIGYP T0316 130 :ARVAR 1dv1A 156 :VIIKA T0316 138 :GTVHMLRGV 1dv1A 220 :GNAIYLAER T0316 147 :DNGKDQTYF 1dv1A 234 :RRHQKVVEE T0316 156 :LSQLSQEQLQKTM 1dv1A 245 :APGITPELRRYIG T0316 177 :PEVRRLAEEAGL 1dv1A 258 :ERCAKACVDIGY T0316 195 :DSTGICFI 1dv1A 280 :ENGEFYFI T0316 221 :RMMTV 1dv1A 288 :EMNTR T0316 245 :GGLGIGG 1dv1A 319 :QPLSIKQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=1710 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uluA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1uluA expands to /projects/compbio/data/pdb/1ulu.pdb.gz 1uluA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0316 read from 1uluA/merged-good-all-a2m # 1uluA read from 1uluA/merged-good-all-a2m # adding 1uluA to template set # found chain 1uluA in template set Warning: unaligning (T0316)V146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uluA)F204 Warning: unaligning (T0316)S157 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uluA)F204 T0316 3 :DNSKTRVVVG 1uluA 5 :DLSGKKALVM T0316 19 :SSVTALLLKEQGYDVIGIFM 1uluA 23 :GFAIAAKLKEAGAEVALSYQ T0316 52 :ATEDYKDVVAVADQIG 1uluA 43 :AERLRPEAEKLAEALG T0316 68 :IPYYSVNF 1uluA 60 :ALLFRADV T0316 77 :KEYWDRVFEYFL 1uluA 70 :DEELDALFAGVK T0316 89 :AEYRAGR 1uluA 99 :REAMEGR T0316 100 :DVMCNKE 1uluA 106 :YIDTRRQ T0316 108 :KFKAFLDYAITL 1uluA 113 :DWLLALEVSAYS T0316 123 :YVATGHYARVARDEDGT 1uluA 141 :GIVTLTYYASEKVVPKY T0316 144 :RG 1uluA 191 :GP T0316 158 :QLSQEQLQKTMFPLGHLEKPEVRRLAEEA 1uluA 205 :TKMYDRVAQTAPLRRNITQEEVGNLGLFL Number of specific fragments extracted= 11 number of extra gaps= 0 total=1721 Number of alignments=109 # 1uluA read from 1uluA/merged-good-all-a2m # found chain 1uluA in template set Warning: unaligning (T0316)V146 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1uluA)F204 Warning: unaligning (T0316)S157 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1uluA)F204 T0316 5 :SKTRVVVG 1uluA 7 :SGKKALVM T0316 19 :SSVTALLLKEQGYD 1uluA 23 :GFAIAAKLKEAGAE T0316 34 :IGIFM 1uluA 37 :VALSY T0316 46 :E 1uluA 42 :Q T0316 52 :ATEDYKDVVAVADQIG 1uluA 43 :AERLRPEAEKLAEALG T0316 69 :PYYSVNFE 1uluA 59 :GALLFRAD T0316 77 :KEYWDRVFEYFLAEY 1uluA 70 :DEELDALFAGVKEAF T0316 94 :GR 1uluA 85 :GG T0316 139 :TVHMLRG 1uluA 184 :RVNAISA T0316 158 :QLSQEQLQK 1uluA 205 :TKMYDRVAQ T0316 168 :MFPL 1uluA 214 :TAPL T0316 172 :GHLEKPEVRRLAEEA 1uluA 219 :RNITQEEVGNLGLFL T0316 188 :LSTAK 1uluA 235 :SPLAS T0316 194 :KDSTGICFI 1uluA 240 :GITGEVVYV Number of specific fragments extracted= 14 number of extra gaps= 0 total=1735 Number of alignments=110 # 1uluA read from 1uluA/merged-good-all-a2m # found chain 1uluA in template set T0316 5 :SKTRVVVG 1uluA 7 :SGKKALVM T0316 18 :DSSVTALLLKEQGYDVIGIF 1uluA 22 :LGFAIAAKLKEAGAEVALSY T0316 51 :TATEDYKDVVAVADQIG 1uluA 42 :QAERLRPEAEKLAEALG T0316 68 :IPYYSVNF 1uluA 60 :ALLFRADV T0316 76 :EKEYWDRVFEYFLAEY 1uluA 69 :QDEELDALFAGVKEAF T0316 97 :PNP 1uluA 96 :FAP T0316 104 :NKEIKFKAFLDYAIT 1uluA 109 :TRRQDWLLALEVSAY T0316 120 :GADYVATGHYARVARDED 1uluA 139 :GGGIVTLTYYASEKVVPK T0316 160 :SQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAK 1uluA 207 :MYDRVAQTAPLRRNITQEEVGNLGLFLLSPLAS T0316 194 :KDSTGICFIGE 1uluA 240 :GITGEVVYVDA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1745 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ek6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1ek6A/merged-good-all-a2m # 1ek6A read from 1ek6A/merged-good-all-a2m # found chain 1ek6A in training set T0316 6 :KTRVVVG 1ek6A 2 :AEKVLVT T0316 16 :GVDSSVTALLLKEQGYDVIGIFM 1ek6A 12 :GYIGSHTVLELLEAGYLPVVIDN T0316 46 :ENGVCTATEDY 1ek6A 35 :FHNAFRGGGSL T0316 57 :KDVVAVADQIGIPYYSVN 1ek6A 47 :ESLRRVQELTGRSVEFEE T0316 75 :FEKEYWDRVFEYFL 1ek6A 68 :LDQGALQRLFKKYS T0316 89 :AEYRA 1ek6A 102 :LDYYR T0316 103 :CNKE 1ek6A 107 :VNLT T0316 108 :KFKAFLDYAITLGADYVATGHYARVARDEDGTV 1ek6A 111 :GTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLP T0316 143 :LRGVDNGKDQTYFLSQLSQEQL 1ek6A 144 :LDEAHPTGGCTNPYGKSKFFIE T0316 177 :PEVRRLAEE 1ek6A 166 :EMIRDLCQA T0316 187 :G 1ek6A 176 :K T0316 192 :K 1ek6A 192 :H T0316 195 :DSTGICFIGEKNFKNFLSNY 1ek6A 193 :ASGCIGEDPQGIPNNLMPYV T0316 215 :LPAQPG 1ek6A 217 :IGRREA T0316 223 :MTVDGRDMGEHAGLMYYTIG 1ek6A 223 :LNVFGNDYDTEDGTGVRDYI Number of specific fragments extracted= 15 number of extra gaps= 0 total=1760 Number of alignments=112 # 1ek6A read from 1ek6A/merged-good-all-a2m # found chain 1ek6A in training set T0316 6 :KTRVVVG 1ek6A 2 :AEKVLVT T0316 19 :SSVTALLLKEQGYDVIGIFMKNWDDTDENG 1ek6A 15 :GSHTVLELLEAGYLPVVIDNFHNAFRGGGS T0316 56 :Y 1ek6A 45 :L T0316 57 :KDVVAVADQIGIPYYSVNFE 1ek6A 47 :ESLRRVQELTGRSVEFEEMD T0316 77 :KEYWDRVFEY 1ek6A 70 :QGALQRLFKK T0316 105 :KEI 1ek6A 109 :LTG T0316 109 :FKAFLDYAITLGADYVATGHYARVARDEDG 1ek6A 112 :TIQLLEIMKAHGVKNLVFSSSATVYGNPQY T0316 139 :TVHMLRGVDNGK 1ek6A 263 :GCRIYNLGTGTG T0316 174 :LEKPEVRRLAEEA 1ek6A 275 :YSVLQMVQAMEKA T0316 187 :GLSTAKKKDSTG 1ek6A 291 :KIPYKVVARREG T0316 199 :ICFIGEKNFKNFLSNYLPA 1ek6A 306 :ACYANPSLAQEELGWTAAL T0316 279 :YHDSLMSTSLEAS 1ek6A 325 :GLDRMCEDLWRWQ Number of specific fragments extracted= 12 number of extra gaps= 0 total=1772 Number of alignments=113 # 1ek6A read from 1ek6A/merged-good-all-a2m # found chain 1ek6A in training set T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVC 1ek6A 2 :AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLP T0316 57 :KDVVAVADQIGIPYYSVNF 1ek6A 47 :ESLRRVQELTGRSVEFEEM T0316 76 :EKEYWDRVFEY 1ek6A 69 :DQGALQRLFKK T0316 87 :FLAEYRAG 1ek6A 104 :YYRVNLTG T0316 109 :FKAFLDYAITLGADYVATGHYARVARDE 1ek6A 112 :TIQLLEIMKAHGVKNLVFSSSATVYGNP T0316 145 :GVDNG 1ek6A 143 :PLDEA T0316 169 :FPLGHLE 1ek6A 148 :HPTGGCT T0316 176 :KPEVRRLAEE 1ek6A 165 :EEMIRDLCQA Number of specific fragments extracted= 8 number of extra gaps= 0 total=1780 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1efcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1efcA expands to /projects/compbio/data/pdb/1efc.pdb.gz 1efcA:# T0316 read from 1efcA/merged-good-all-a2m # 1efcA read from 1efcA/merged-good-all-a2m # adding 1efcA to template set # found chain 1efcA in template set T0316 5 :SKTRVVVGM 1efcA 97 :QMDGAILVV T0316 19 :SSVTALLLKEQGYD 1efcA 115 :TREHILLGRQVGVP T0316 33 :VIGIFM 1efcA 130 :IIVFLN T0316 46 :ENGVCTATEDYK 1efcA 136 :KCDMVDDEELLE T0316 58 :DVVAVADQIGIP 1efcA 152 :EVRELLSQYDFP T0316 72 :SVNFE 1efcA 169 :IVRGS T0316 84 :FEYFL 1efcA 174 :ALKAL T0316 89 :AEYRA 1efcA 182 :AEWEA T0316 108 :KFKAFLDYAITL 1efcA 187 :KILELAGFLDSY T0316 143 :LRGVDNGKDQTYFLS 1efcA 199 :IPEPERAIDKPFLLP T0316 188 :LSTAKKKDSTGICFIGEKNF 1efcA 214 :IEDVFSISGRGTVVTGRVER T0316 220 :GRMMTV 1efcA 239 :GEEVEI T0316 226 :DGRDMGEHAGLMYYTIGQRGGLGI 1efcA 288 :RGQVLAKPGTIKPHTKFESEVYIL T0316 250 :GGQHGGDNA 1efcA 313 :KDEGGRHTP T0316 259 :PWFVVGKD 1efcA 328 :PQFYFRTT T0316 317 :DSKVTVHVKGE 1efcA 336 :DVTGTIELPEG T0316 328 :KTEVIFAE 1efcA 357 :KMVVTLIH T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 1efcA 365 :PIAMDDGLRFAIREGGRTVGAGVVA Number of specific fragments extracted= 18 number of extra gaps= 0 total=1798 Number of alignments=115 # 1efcA read from 1efcA/merged-good-all-a2m # found chain 1efcA in template set T0316 6 :KTRVVVGM 1efcA 98 :MDGAILVV T0316 19 :SSVTALLLKEQGYD 1efcA 115 :TREHILLGRQVGVP T0316 33 :VIGIFM 1efcA 130 :IIVFLN T0316 46 :ENGVCTATEDY 1efcA 136 :KCDMVDDEELL T0316 57 :KDVVAVADQIGIP 1efcA 151 :MEVRELLSQYDFP T0316 71 :YSVNFE 1efcA 168 :PIVRGS T0316 88 :LAEYRAGR 1efcA 174 :ALKALEGD T0316 105 :KEI 1efcA 182 :AEW T0316 108 :KFKAFLDYAITL 1efcA 187 :KILELAGFLDSY T0316 122 :D 1efcA 203 :E T0316 132 :VARD 1efcA 204 :RAID T0316 137 :DGTVHM 1efcA 208 :KPFLLP T0316 143 :LRGVDNGK 1efcA 217 :VFSISGRG T0316 188 :LSTAKKKDSTGICFIGEK 1efcA 231 :VERGIIKVGEEVEIVGIK T0316 220 :GRMMT 1efcA 249 :ETQKS T0316 226 :DGRDMGEHA 1efcA 261 :FRKLLDEGR T0316 235 :GLMYYTIGQRG 1efcA 273 :NVGVLLRGIKR T0316 246 :GLGIGGQHGGD 1efcA 288 :RGQVLAKPGTI T0316 263 :VGKDLSKNILYVGQG 1efcA 299 :KPHTKFESEVYILSK T0316 298 :EMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1efcA 317 :GRHTPFFKGYRPQFYFRTTDVTGTIELPEG T0316 328 :KTEVIFAEPQ 1efcA 357 :KMVVTLIHPI T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 1efcA 367 :AMDDGLRFAIREGGRTVGAGVVAKVL Number of specific fragments extracted= 22 number of extra gaps= 0 total=1820 Number of alignments=116 # 1efcA read from 1efcA/merged-good-all-a2m # found chain 1efcA in template set T0316 7 :TRVVVGMS 1efcA 99 :DGAILVVA T0316 18 :DSSVTALLLKEQGYD 1efcA 114 :QTREHILLGRQVGVP T0316 33 :VIGIFMKNWDDTDEN 1efcA 130 :IIVFLNKCDMVDDEE T0316 51 :TATEDYKDVVAVADQIGIP 1efcA 145 :LLELVEMEVRELLSQYDFP T0316 70 :YYSVNFE 1efcA 169 :IVRGSAL T0316 77 :KEYWDRVFE 1efcA 182 :AEWEAKILE T0316 87 :FLAEYRA 1efcA 191 :LAGFLDS T0316 95 :RTPNPDVMCNKEI 1efcA 198 :YIPEPERAIDKPF T0316 132 :VARDEDGTVHMLRGVDNG 1efcA 217 :VFSISGRGTVVTGRVERG T0316 190 :TAKKK 1efcA 235 :IIKVG T0316 197 :TGICFIGEK 1efcA 240 :EEVEIVGIK T0316 216 :PAQPGRMMT 1efcA 249 :ETQKSTCTG T0316 225 :VDGRDM 1efcA 260 :MFRKLL T0316 231 :GEHAGLMYYT 1efcA 268 :GRAGENVGVL T0316 244 :RGGLGIGGQHGG 1efcA 278 :LRGIKREEIERG T0316 260 :WFVVGKDL 1efcA 290 :QVLAKPGT T0316 270 :NILYVGQGFYH 1efcA 306 :SEVYILSKDEG T0316 294 :HFTREMPEEFTL 1efcA 317 :GRHTPFFKGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 1efcA 329 :QFYFRTTDVTGTIELPEGV T0316 329 :TEVIFAEPQ 1efcA 358 :MVVTLIHPI T0316 339 :AITPGQAVVFYDGEECLGGGLIDNA 1efcA 367 :AMDDGLRFAIREGGRTVGAGVVAKV Number of specific fragments extracted= 21 number of extra gaps= 0 total=1841 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nsyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nsyA expands to /projects/compbio/data/pdb/1nsy.pdb.gz 1nsyA:# T0316 read from 1nsyA/merged-good-all-a2m # 1nsyA read from 1nsyA/merged-good-all-a2m # adding 1nsyA to template set # found chain 1nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLL 1nsyA 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQG 1nsyA 66 :REEG T0316 31 :YDVIGIFM 1nsyA 72 :AQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 1nsyA 80 :PHGTQQDEDDAQLALKF T0316 66 :IGI 1nsyA 97 :IKP T0316 69 :PYYSVNFEKEY 1nsyA 101 :KSWKFDIKSTV T0316 85 :EYFLAEYRA 1nsyA 112 :SAFSDQYQQ T0316 94 :GRTPNPD 1nsyA 122 :TGDQLTD T0316 104 :NKE 1nsyA 136 :ART T0316 108 :KFKAFLDYAITLGADYVATGHY 1nsyA 139 :RMIAQYAIGGQEGLLVLGTDHA T0316 139 :TVHMLRGVDNGKDQTY 1nsyA 161 :AEAVTGFFTKYGDGGA T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 1nsyA 177 :DLLPLTGLTKRQGRTLLKELGAPE T0316 191 :AKKKDSTG 1nsyA 211 :LLDEKPQQ Number of specific fragments extracted= 13 number of extra gaps= 0 total=1854 Number of alignments=118 # 1nsyA read from 1nsyA/merged-good-all-a2m # found chain 1nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1nsyA 37 :GAKGFVLGISGGQDSTLAGRLAQLA T0316 30 :GYDVIGIFM 1nsyA 71 :DAQFIAVRL T0316 46 :ENGVCTATEDYKDVVAVA 1nsyA 80 :PHGTQQDEDDAQLALKFI T0316 67 :GI 1nsyA 98 :KP T0316 69 :PYYSVNFE 1nsyA 101 :KSWKFDIK T0316 82 :RVFEYFLAEYRAGRTPNPD 1nsyA 109 :STVSAFSDQYQQETGDQLT T0316 105 :KE 1nsyA 137 :RT T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 1nsyA 139 :RMIAQYAIGGQEGLLVLGTDHAAEAVTG T0316 140 :VHMLRGVDNGK 1nsyA 167 :FFTKYGDGGAD T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1nsyA 178 :LLPLTGLTKRQGRTLLKELGAP T0316 193 :KKDSTGI 1nsyA 205 :KEPTADL T0316 215 :LPAQP 1nsyA 212 :LDEKP T0316 220 :GR 1nsyA 237 :GK T0316 277 :GFYHDSLMSTSLEASQVHFTREMPEEFT 1nsyA 239 :EVSAKVSEALEKRYSMTEHKRQVPASMF Number of specific fragments extracted= 14 number of extra gaps= 0 total=1868 Number of alignments=119 # 1nsyA read from 1nsyA/merged-good-all-a2m # found chain 1nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLK 1nsyA 37 :GAKGFVLGISGGQDSTLAGRLAQ T0316 28 :EQGYDVIGIFMKNWDDTD 1nsyA 67 :EEGGDAQFIAVRLPHGTQ T0316 54 :EDYKDVVAVADQIGI 1nsyA 85 :QDEDDAQLALKFIKP T0316 69 :PYYSVNFEKEYWDRVFEYFLAE 1nsyA 101 :KSWKFDIKSTVSAFSDQYQQET T0316 94 :GRTPN 1nsyA 123 :GDQLT T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVA 1nsyA 135 :KARTRMIAQYAIGGQEGLLVLGTDHAAEAV T0316 145 :GVDNGKDQT 1nsyA 167 :FFTKYGDGG T0316 167 :TMFPLGHLEKPEVRRLAEEAGLS 1nsyA 177 :DLLPLTGLTKRQGRTLLKELGAP Number of specific fragments extracted= 8 number of extra gaps= 0 total=1876 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rpnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rpnA expands to /projects/compbio/data/pdb/1rpn.pdb.gz 1rpnA:# T0316 read from 1rpnA/merged-good-all-a2m # 1rpnA read from 1rpnA/merged-good-all-a2m # adding 1rpnA to template set # found chain 1rpnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1rpnA)R3 T0316 8 :RVVVG 1rpnA 4 :SALVT T0316 15 :GGVDSSVTALLLKEQGYDVIGIFM 1rpnA 11 :TGQDGAYLAKLLLEKGYRVHGLVA T0316 42 :DDTDENG 1rpnA 35 :RRSSDTR T0316 61 :AVADQIGI 1rpnA 42 :WRLRELGI T0316 69 :PYYSVNFE 1rpnA 52 :DIQYEDGD T0316 77 :KEYWDRVFEYFL 1rpnA 63 :ACSVQRAVIKAQ T0316 89 :AEYRA 1rpnA 88 :GASWN T0316 102 :MCNKEI 1rpnA 100 :VDGLGV T0316 110 :KAFLDYAITL 1rpnA 106 :THLLEAIRQF T0316 120 :GADYVATGHYARVARDEDGT 1rpnA 118 :ETRFYQASTSEMFGLIQAER T0316 178 :EVRRLAEEAGLST 1rpnA 160 :ITVNYRESFGLHA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1887 Number of alignments=121 # 1rpnA read from 1rpnA/merged-good-all-a2m # found chain 1rpnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1rpnA)R3 T0316 8 :RVVVG 1rpnA 4 :SALVT T0316 15 :GGVDSSVTALLLKEQGYDVIGIFM 1rpnA 11 :TGQDGAYLAKLLLEKGYRVHGLVA T0316 44 :TDENGVC 1rpnA 35 :RRSSDTR T0316 61 :AVADQIGI 1rpnA 42 :WRLRELGI T0316 69 :PYYSVNFE 1rpnA 52 :DIQYEDGD T0316 77 :KEYWDRVFEYF 1rpnA 63 :ACSVQRAVIKA T0316 98 :NPD 1rpnA 74 :QPQ T0316 106 :EI 1rpnA 103 :LG T0316 109 :FKAFLDYAITL 1rpnA 105 :VTHLLEAIRQF T0316 120 :GADYVATGHY 1rpnA 118 :ETRFYQASTS T0316 132 :VARDE 1rpnA 128 :EMFGL T0316 141 :HMLRGVDNGK 1rpnA 134 :QAERQDENTP T0316 153 :TYFLSQLSQEQLQ 1rpnA 144 :FYPRSPYGVAKLY T0316 167 :T 1rpnA 157 :G T0316 176 :KPEVRRLAEEAGLST 1rpnA 158 :HWITVNYRESFGLHA T0316 191 :AKKKDS 1rpnA 180 :HESPLR T0316 198 :GICFIGEKNFKNFLSNYLPAQP 1rpnA 186 :GIEFVTRKVTDAVARIKLGKQQ T0316 286 :TSLEASQVHFTREMPE 1rpnA 253 :RDMCQIAFEHVGLDYR Number of specific fragments extracted= 18 number of extra gaps= 0 total=1905 Number of alignments=122 # 1rpnA read from 1rpnA/merged-good-all-a2m # found chain 1rpnA in template set Warning: unaligning (T0316)T7 because first residue in template chain is (1rpnA)R3 T0316 8 :RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD 1rpnA 4 :SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSD T0316 51 :TATEDYKDVVAVADQIGIPYYSV 1rpnA 58 :GDMADACSVQRAVIKAQPQEVYN T0316 74 :NFEKEYWDRVFEY 1rpnA 92 :NQPVTTGVVDGLG T0316 109 :FKAFLDYAIT 1rpnA 105 :VTHLLEAIRQ T0316 119 :LGADYVATGHYARVARDEDGTV 1rpnA 117 :PETRFYQASTSEMFGLIQAERQ T0316 147 :DNGK 1rpnA 139 :DENT T0316 151 :DQTYFLSQLS 1rpnA 146 :PRSPYGVAKL T0316 176 :KPEVRRLAEEAGLSTAK 1rpnA 158 :HWITVNYRESFGLHASS Number of specific fragments extracted= 8 number of extra gaps= 0 total=1913 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aipA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aipA expands to /projects/compbio/data/pdb/1aip.pdb.gz 1aipA:# T0316 read from 1aipA/merged-good-all-a2m # 1aipA read from 1aipA/merged-good-all-a2m # adding 1aipA to template set # found chain 1aipA in template set T0316 4 :NSKTRVVVGMS 1aipA 97 :AQMDGAILVVS T0316 22 :TALLLKEQGYD 1aipA 119 :HILLARQVGVP T0316 33 :VIGIFM 1aipA 131 :IVVFMN T0316 46 :ENGVCTATEDYKDVVAVADQI 1aipA 137 :KVDMVDDPELLDLVEMEVRDL T0316 67 :GIPYYSVNF 1aipA 167 :EVPVIRGSA T0316 85 :EYFLAEYRA 1aipA 176 :LLALEQMHR T0316 94 :GRTPNPD 1aipA 186 :PKTRRGE T0316 104 :NKEI 1aipA 193 :NEWV T0316 108 :KFKAFLDYAITL 1aipA 198 :KIWELLDAIDEY T0316 134 :R 1aipA 211 :P T0316 147 :DNGKDQTY 1aipA 212 :TPVRDVDK T0316 166 :KTMFP 1aipA 220 :PFLMP T0316 188 :LSTAKKKDSTGICFIGEKNF 1aipA 225 :VEDVFTITGRGTVATGRIER T0316 209 :NFL 1aipA 245 :GKV T0316 218 :QPGRMMTV 1aipA 248 :KVGDEVEI T0316 230 :MGEHAGLMYYTIGQ 1aipA 256 :VGLAPETRRTVVTG T0316 247 :LGIGGQHGGDNA 1aipA 270 :VEMHRKTLQEGI T0316 259 :PWFVVGK 1aipA 285 :NVGVLLR T0316 266 :DLSKNILYVGQGFY 1aipA 297 :EVERGQVLAKPGSI T0316 289 :EA 1aipA 311 :TP T0316 302 :EFTLECTA 1aipA 313 :HTKFEASV T0316 310 :KFRYRQPDSKVTVHVKGE 1aipA 341 :QFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAE 1aipA 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 1aipA 377 :PVALEEGLRFAIREGGRTVGAGVVT Number of specific fragments extracted= 24 number of extra gaps= 0 total=1937 Number of alignments=124 # 1aipA read from 1aipA/merged-good-all-a2m # found chain 1aipA in template set T0316 6 :KTRVVVGMS 1aipA 99 :MDGAILVVS T0316 22 :TALLLKEQGYD 1aipA 119 :HILLARQVGVP T0316 33 :VIGIFM 1aipA 131 :IVVFMN T0316 46 :ENGVCTATEDY 1aipA 137 :KVDMVDDPELL T0316 57 :KDVVAVADQIGIP 1aipA 152 :MEVRDLLNQYEFP T0316 70 :YYSVNFE 1aipA 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1aipA 175 :ALLALEQMHR T0316 94 :GRTPNPD 1aipA 186 :PKTRRGE T0316 104 :NKEI 1aipA 193 :NEWV T0316 108 :KFKAFLDYAITL 1aipA 198 :KIWELLDAIDEY T0316 130 :ARVARD 1aipA 214 :VRDVDK T0316 137 :DG 1aipA 220 :PF T0316 232 :EHAGLMYYTIGQRGGLGIGGQ 1aipA 247 :VKVGDEVEIVGLAPETRRTVV T0316 253 :HGG 1aipA 272 :MHR T0316 257 :NAPWFVVGK 1aipA 283 :GDNVGVLLR T0316 266 :DLSKNILYVGQG 1aipA 297 :EVERGQVLAKPG T0316 279 :YHDS 1aipA 324 :KKEE T0316 297 :REMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1aipA 328 :GGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAEPQRA 1aipA 369 :TFTVELIKPVAL T0316 341 :TPGQAVVFYDGEECLGGGLIDNAY 1aipA 381 :EEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 20 number of extra gaps= 0 total=1957 Number of alignments=125 # 1aipA read from 1aipA/merged-good-all-a2m # found chain 1aipA in template set T0316 7 :TRVVVGMSG 1aipA 100 :DGAILVVSA T0316 47 :NG 1aipA 109 :AD T0316 51 :TATEDYKDVVAVADQIGIPYYSV 1aipA 111 :GPMPQTREHILLARQVGVPYIVV T0316 76 :EKEYWDRVFEYFLAEYRAGRTP 1aipA 143 :DPELLDLVEMEVRDLLNQYEFP T0316 98 :NPDVMCN 1aipA 168 :VPVIRGS T0316 109 :FKAFLDYAIT 1aipA 175 :ALLALEQMHR T0316 135 :DEDGT 1aipA 185 :NPKTR T0316 148 :NGKD 1aipA 190 :RGEN T0316 162 :EQLQKTM 1aipA 194 :EWVDKIW T0316 178 :EVRRLAEEA 1aipA 201 :ELLDAIDEY T0316 188 :LSTAKKKDSTGICFIGE 1aipA 210 :IPTPVRDVDKPFLMPVE T0316 221 :RMMTV 1aipA 227 :DVFTI T0316 226 :DGRDMGEHAGLM 1aipA 260 :PETRRTVVTGVE T0316 249 :IGGQHG 1aipA 272 :MHRKTL T0316 255 :GDNAPWFVVGKDLSK 1aipA 281 :IAGDNVGVLLRGVSR T0316 270 :NILYVGQGFYH 1aipA 318 :ASVYVLKKEEG T0316 294 :HFTREMPEEFTL 1aipA 329 :GRHTGFFSGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 1aipA 341 :QFYFRTTDVTGVVQLPPGV T0316 329 :TEVIFAEPQ 1aipA 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 1aipA 379 :ALEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 20 number of extra gaps= 0 total=1977 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kjqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1kjqA/merged-good-all-a2m # 1kjqA read from 1kjqA/merged-good-all-a2m # found chain 1kjqA in training set Warning: unaligning (T0316)K193 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kjqA)K163 Warning: unaligning (T0316)T197 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kjqA)K163 T0316 4 :NSKTRVVVGMSG 1kjqA 10 :PAATRVMLLGSG T0316 19 :SSVTALLLKEQGYDVIGIFM 1kjqA 24 :GKEVAIECQRLGVEVIAVDR T0316 46 :ENGVCTATE 1kjqA 44 :YADAPAMHV T0316 68 :I 1kjqA 53 :A T0316 69 :PYYSVNFE 1kjqA 55 :RSHVINML T0316 108 :KFKAFLDYAITLGADYVATGHYA 1kjqA 63 :DGDALRRVVELEKPHYIVPEIEA T0316 134 :RDEDGTVHM 1kjqA 86 :IATDMLIQL T0316 143 :LRGVDNGKDQTYFLSQLSQEQLQ 1kjqA 96 :EEGLNVVPCARATKLTMNREGIR T0316 166 :KTMFPLGH 1kjqA 124 :ELQLPTST T0316 175 :EKPEVRRLAEEAGLS 1kjqA 137 :SESLFREAVADIGYP T0316 191 :AK 1kjqA 157 :VM T0316 198 :GICFIGE 1kjqA 164 :GQTFIRS T0316 226 :DGRD 1kjqA 199 :KFDF T0316 235 :GLMYYTIGQRGGLGI 1kjqA 203 :EITLLTVSAVDGVHF T0316 258 :APWFVVGKDLSKNILYVGQGFYHDSLMST 1kjqA 218 :CAPVGHRQEDGDYRESWQPQQMSPLALER T0316 290 :ASQVHF 1kjqA 258 :LGGYGL T0316 320 :VTVHVKGEKTEVIFAEP 1kjqA 266 :VELFVCGDEVIFSEVSP Number of specific fragments extracted= 17 number of extra gaps= 0 total=1994 Number of alignments=127 # 1kjqA read from 1kjqA/merged-good-all-a2m # found chain 1kjqA in training set Warning: unaligning (T0316)K193 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kjqA)K163 Warning: unaligning (T0316)T197 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kjqA)K163 T0316 4 :NSKTRVVVGMSG 1kjqA 10 :PAATRVMLLGSG T0316 19 :SSVTALLLKEQGYDVIGIF 1kjqA 24 :GKEVAIECQRLGVEVIAVD T0316 38 :MKNWDDTDENGVC 1kjqA 47 :APAMHVAHRSHVI T0316 52 :ATEDYKDVVAVADQIGIPYYSV 1kjqA 60 :NMLDGDALRRVVELEKPHYIVP T0316 74 :NFE 1kjqA 85 :AIA T0316 84 :FEYFLAEYRAGRTPNPDVMCNKE 1kjqA 88 :TDMLIQLEEEGLNVVPCARATKL T0316 107 :IKFKAFLDYAITL 1kjqA 112 :MNREGIRRLAAEE T0316 132 :VARD 1kjqA 125 :LQLP T0316 137 :DGTVHMLR 1kjqA 129 :TSTYRFAD T0316 175 :EKPEVRRLAEEAGLS 1kjqA 137 :SESLFREAVADIGYP T0316 190 :TAK 1kjqA 156 :PVM T0316 198 :GICFIGEKNFK 1kjqA 164 :GQTFIRSAEQL T0316 209 :NFLSN 1kjqA 176 :QAWKY T0316 214 :YLP 1kjqA 186 :RAG T0316 220 :GRMMTVDGRDMGEHAGLMYYT 1kjqA 213 :DGVHFCAPVGHRQEDGDYRES T0316 273 :YVGQGFYHDSLMSTSLEASQVHFTREM 1kjqA 234 :WQPQQMSPLALERAQEIARKVVLALGG T0316 342 :PGQAVV 1kjqA 261 :YGLFGV T0316 348 :FYDGEECLGGGLIDNA 1kjqA 269 :FVCGDEVIFSEVSPRP Number of specific fragments extracted= 18 number of extra gaps= 0 total=2012 Number of alignments=128 # 1kjqA read from 1kjqA/merged-good-all-a2m # found chain 1kjqA in training set Warning: unaligning (T0316)D147 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kjqA)K163 Warning: unaligning (T0316)K150 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kjqA)K163 T0316 2 :SDNSKTRVVVGMSG 1kjqA 8 :LRPAATRVMLLGSG T0316 17 :VDSSVTALLLKEQGYDVIGIF 1kjqA 22 :ELGKEVAIECQRLGVEVIAVD T0316 42 :DDT 1kjqA 44 :YAD T0316 48 :GVCTATEDYKDVVAVADQIGIPYYSV 1kjqA 56 :SHVINMLDGDALRRVVELEKPHYIVP T0316 84 :FEYFLAEYRAGRTPNPDVMCNKE 1kjqA 88 :TDMLIQLEEEGLNVVPCARATKL T0316 107 :IKFKAFLDYAIT 1kjqA 112 :MNREGIRRLAAE T0316 119 :LGAD 1kjqA 125 :LQLP T0316 129 :YARVA 1kjqA 131 :TYRFA T0316 136 :ED 1kjqA 136 :DS T0316 138 :GTVHMLRGV 1kjqA 150 :YPCIVKPVM T0316 151 :DQTYF 1kjqA 164 :GQTFI T0316 171 :LGHLEKPEVRRLAEEAGLSTA 1kjqA 169 :RSAEQLAQAWKYAQQGGRAGA T0316 197 :TGICFIGEKNFK 1kjqA 190 :GRVIVEGVVKFD T0316 234 :AGLMYYTIGQRGGLGIG 1kjqA 202 :FEITLLTVSAVDGVHFC T0316 258 :APWFVVGKDLSKNILYVGQGFYHDSLMS 1kjqA 219 :APVGHRQEDGDYRESWQPQQMSPLALER T0316 303 :FTLE 1kjqA 260 :GYGL T0316 318 :SKVTVHVKGEKTEVIFAE 1kjqA 264 :FGVELFVCGDEVIFSEVS Number of specific fragments extracted= 17 number of extra gaps= 0 total=2029 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aipE/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aipE expands to /projects/compbio/data/pdb/1aip.pdb.gz 1aipE:# T0316 read from 1aipE/merged-good-all-a2m # 1aipE read from 1aipE/merged-good-all-a2m # adding 1aipE to template set # found chain 1aipE in template set T0316 4 :NSKTRVVVGMS 1aipE 97 :AQMDGAILVVS T0316 22 :TALLLKEQGYD 1aipE 119 :HILLARQVGVP T0316 33 :VIGIFM 1aipE 131 :IVVFMN T0316 46 :ENGVCTATEDYKDVVAVADQI 1aipE 137 :KVDMVDDPELLDLVEMEVRDL T0316 67 :GIPYYSVNF 1aipE 167 :EVPVIRGSA T0316 85 :EYFLAEYRA 1aipE 176 :LLALEQMHR T0316 94 :GRTPNPD 1aipE 186 :PKTRRGE T0316 104 :NKEI 1aipE 193 :NEWV T0316 108 :KFKAFLDYAITL 1aipE 198 :KIWELLDAIDEY T0316 131 :RVARDEDG 1aipE 212 :TPVRDVDK T0316 166 :KTMFP 1aipE 220 :PFLMP T0316 188 :LSTAKKKDSTGICFIGEKNF 1aipE 225 :VEDVFTITGRGTVATGRIER T0316 209 :NFL 1aipE 245 :GKV T0316 218 :QPGRMMTV 1aipE 248 :KVGDEVEI T0316 230 :MGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLS 1aipE 256 :VGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVS T0316 280 :HDSLMSTSL 1aipE 295 :REEVERGQV T0316 290 :ASQVHFTR 1aipE 304 :LAKPGSIT T0316 301 :EEFTLECTA 1aipE 312 :PHTKFEASV T0316 310 :KFRYRQPDSKVTVHVKGE 1aipE 341 :QFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAE 1aipE 369 :TFTVELIK T0316 337 :QRAITPGQAVVFYDGEECLGGGLID 1aipE 377 :PVALEEGLRFAIREGGRTVGAGVVT Number of specific fragments extracted= 21 number of extra gaps= 0 total=2050 Number of alignments=130 # 1aipE read from 1aipE/merged-good-all-a2m # found chain 1aipE in template set T0316 5 :SKTRVVVGMS 1aipE 98 :QMDGAILVVS T0316 22 :TALLLKEQGYD 1aipE 119 :HILLARQVGVP T0316 33 :VIGIFM 1aipE 131 :IVVFMN T0316 46 :ENGVCTATEDYKDVVAVADQI 1aipE 137 :KVDMVDDPELLDLVEMEVRDL T0316 67 :GIP 1aipE 162 :EFP T0316 70 :YYSVNFE 1aipE 168 :VPVIRGS T0316 84 :FEYFLAEYRA 1aipE 175 :ALLALEQMHR T0316 94 :GRTPNPD 1aipE 186 :PKTRRGE T0316 105 :KEI 1aipE 194 :EWV T0316 108 :KFKAFLDYAITL 1aipE 198 :KIWELLDAIDEY T0316 135 :D 1aipE 211 :P T0316 137 :DG 1aipE 212 :TP T0316 139 :TVHMLRG 1aipE 239 :TGRIERG T0316 192 :KKKDSTGICFIG 1aipE 246 :KVKVGDEVEIVG T0316 217 :AQPGRMMTV 1aipE 258 :LAPETRRTV T0316 226 :DGRDMGEH 1aipE 273 :HRKTLQEG T0316 234 :AGLMYYT 1aipE 282 :AGDNVGV T0316 241 :IGQRG 1aipE 291 :RGVSR T0316 246 :GLG 1aipE 297 :EVE T0316 249 :IGGQHGGD 1aipE 303 :VLAKPGSI T0316 263 :VGKDLSKNILYVGQG 1aipE 311 :TPHTKFEASVYVLKK T0316 279 :Y 1aipE 327 :E T0316 297 :REMPEEFTLECTAKFRYRQPDSKVTVHVKGE 1aipE 328 :GGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG T0316 328 :KTEVIFAEPQRA 1aipE 369 :TFTVELIKPVAL T0316 341 :TPGQAVVFYDGEECLGGGLIDNAY 1aipE 381 :EEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 25 number of extra gaps= 0 total=2075 Number of alignments=131 # 1aipE read from 1aipE/merged-good-all-a2m # found chain 1aipE in template set T0316 7 :TRVVVGMSG 1aipE 100 :DGAILVVSA T0316 47 :NG 1aipE 109 :AD T0316 51 :TATEDYKDVVAVADQIGIPYYSV 1aipE 111 :GPMPQTREHILLARQVGVPYIVV T0316 76 :EKEYWDRVFEYFLAEYRAGRTP 1aipE 143 :DPELLDLVEMEVRDLLNQYEFP T0316 98 :NPDVMCN 1aipE 168 :VPVIRGS T0316 109 :FKAFLDYAIT 1aipE 175 :ALLALEQMHR T0316 135 :DEDGT 1aipE 185 :NPKTR T0316 148 :NGKD 1aipE 190 :RGEN T0316 162 :EQLQKTM 1aipE 194 :EWVDKIW T0316 178 :EVRRLAEEA 1aipE 201 :ELLDAIDEY T0316 188 :LSTAKKKDSTGICFIGE 1aipE 210 :IPTPVRDVDKPFLMPVE T0316 221 :RMMTV 1aipE 227 :DVFTI T0316 226 :DGRDMGEHAGLMY 1aipE 260 :PETRRTVVTGVEM T0316 243 :QRGGLGIGG 1aipE 273 :HRKTLQEGI T0316 256 :DNAPWFVVGKDLSK 1aipE 282 :AGDNVGVLLRGVSR T0316 270 :NILYVGQGFYH 1aipE 318 :ASVYVLKKEEG T0316 294 :HFTREMPEEFTL 1aipE 329 :GRHTGFFSGYRP T0316 310 :KFRYRQPDSKVTVHVKGEK 1aipE 341 :QFYFRTTDVTGVVQLPPGV T0316 329 :TEVIFAEPQ 1aipE 370 :FTVELIKPV T0316 339 :AITPGQAVVFYDGEECLGGGLIDNAY 1aipE 379 :ALEEGLRFAIREGGRTVGAGVVTKIL Number of specific fragments extracted= 20 number of extra gaps= 0 total=2095 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xg5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0316 read from 1xg5A/merged-good-all-a2m # 1xg5A read from 1xg5A/merged-good-all-a2m # found chain 1xg5A in training set Warning: unaligning (T0316)V59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xg5A)A52 Warning: unaligning (T0316)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xg5A)A52 Warning: unaligning (T0316)Y71 because of BadResidue code BAD_PEPTIDE in next template residue (1xg5A)P66 Warning: unaligning (T0316)S72 because of BadResidue code BAD_PEPTIDE at template residue (1xg5A)P66 Warning: unaligning (T0316)F169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xg5A)C226 Warning: unaligning (T0316)H173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xg5A)C226 T0316 1 :MSDNSKTRVVVG 1xg5A 6 :MERWRDRLALVT T0316 14 :SGGV 1xg5A 20 :SGGI T0316 19 :SSVTALLLKEQGYDVIGIFM 1xg5A 24 :GAAVARALVQQGLKVVGCAR T0316 52 :ATEDYKD 1xg5A 44 :TVGNIEE T0316 61 :AVADQIGI 1xg5A 53 :AECKSAGY T0316 69 :PY 1xg5A 63 :TL T0316 73 :VNFE 1xg5A 67 :YRCD T0316 77 :KEYWDRVFEYFLAEY 1xg5A 74 :EEDILSMFSAIRSQH T0316 95 :RT 1xg5A 90 :GV T0316 103 :CNKE 1xg5A 124 :ALSI T0316 108 :KFKAFLDYAITLGAD 1xg5A 128 :CTREAYQSMKERNVD T0316 123 :YVATGHYARVARDEDGT 1xg5A 145 :HIININSMSGHRVLPLS T0316 151 :DQTYFLSQLSQEQLQKTM 1xg5A 204 :QFAFKLHDKDPEKAAATY T0316 174 :LEKPEVRRLAEEA 1xg5A 227 :LKPEDVAEAVIYV T0316 195 :DSTGICF 1xg5A 242 :TPAHIQI Number of specific fragments extracted= 15 number of extra gaps= 2 total=2110 Number of alignments=133 # 1xg5A read from 1xg5A/merged-good-all-a2m # found chain 1xg5A in training set Warning: unaligning (T0316)V59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xg5A)A52 Warning: unaligning (T0316)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xg5A)A52 Warning: unaligning (T0316)Y71 because of BadResidue code BAD_PEPTIDE in next template residue (1xg5A)P66 Warning: unaligning (T0316)S72 because of BadResidue code BAD_PEPTIDE at template residue (1xg5A)P66 Warning: unaligning (T0316)K193 because of BadResidue code BAD_PEPTIDE in next template residue (1xg5A)C195 Warning: unaligning (T0316)C200 because of BadResidue code BAD_PEPTIDE at template residue (1xg5A)C195 Warning: unaligning (T0316)G203 because of BadResidue code BAD_PEPTIDE in next template residue (1xg5A)G199 Warning: unaligning (T0316)E204 because of BadResidue code BAD_PEPTIDE at template residue (1xg5A)G199 T0316 5 :SKTRVVVG 1xg5A 10 :RDRLALVT T0316 14 :SGGV 1xg5A 20 :SGGI T0316 19 :SSVTALLLKEQGYDVIGIFM 1xg5A 24 :GAAVARALVQQGLKVVGCAR T0316 52 :ATEDYKD 1xg5A 44 :TVGNIEE T0316 61 :AVADQIGI 1xg5A 53 :AECKSAGY T0316 69 :PY 1xg5A 63 :TL T0316 73 :VNFE 1xg5A 67 :YRCD T0316 77 :KEYWDRVFEYFLAEY 1xg5A 74 :EEDILSMFSAIRSQH T0316 94 :GRT 1xg5A 89 :SGV T0316 105 :KEI 1xg5A 126 :SIC T0316 109 :FKAFLDYAITLGAD 1xg5A 129 :TREAYQSMKERNVD T0316 123 :YVATGHYARVARD 1xg5A 145 :HIININSMSGHRV T0316 137 :DG 1xg5A 158 :LP T0316 176 :KPEVRRLAEEAGLSTAK 1xg5A 177 :TEGLRQELREAQTHIRA T0316 201 :FI 1xg5A 196 :IS T0316 205 :KNFKNFLSNYLPAQP 1xg5A 200 :VVETQFAFKLHDKDP T0316 220 :G 1xg5A 245 :H Number of specific fragments extracted= 17 number of extra gaps= 4 total=2127 Number of alignments=134 # 1xg5A read from 1xg5A/merged-good-all-a2m # found chain 1xg5A in training set Warning: unaligning (T0316)V59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xg5A)A52 Warning: unaligning (T0316)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xg5A)A52 Warning: unaligning (T0316)Y71 because of BadResidue code BAD_PEPTIDE in next template residue (1xg5A)P66 Warning: unaligning (T0316)S72 because of BadResidue code BAD_PEPTIDE at template residue (1xg5A)P66 Warning: unaligning (T0316)F169 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xg5A)C226 Warning: unaligning (T0316)H173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xg5A)C226 T0316 3 :DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIF 1xg5A 8 :RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCA T0316 51 :TATEDYKD 1xg5A 43 :RTVGNIEE T0316 61 :AVADQIGIP 1xg5A 53 :AECKSAGYP T0316 70 :Y 1xg5A 64 :L T0316 73 :VNF 1xg5A 67 :YRC T0316 76 :EKEYWDRVFEYFLAEY 1xg5A 73 :NEEDILSMFSAIRSQH T0316 96 :TPNPDVM 1xg5A 100 :LARPDTL T0316 107 :IKFKAFLDYAITLGAD 1xg5A 127 :ICTREAYQSMKERNVD T0316 123 :YVATGHYARVARDE 1xg5A 146 :IININSMSGHRVLP T0316 150 :KDQTYFLSQLSQEQLQKTM 1xg5A 203 :TQFAFKLHDKDPEKAAATY T0316 174 :LEKPEVRRLAEEA 1xg5A 227 :LKPEDVAEAVIYV Number of specific fragments extracted= 11 number of extra gaps= 2 total=2138 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q9iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q9iA expands to /projects/compbio/data/pdb/1q9i.pdb.gz 1q9iA:# T0316 read from 1q9iA/merged-good-all-a2m # 1q9iA read from 1q9iA/merged-good-all-a2m # adding 1q9iA to template set # found chain 1q9iA in template set Warning: unaligning (T0316)V49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q9iA)G162 T0316 7 :TR 1q9iA 125 :DT T0316 9 :VVVGMSGGV 1q9iA 129 :VVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFM 1q9iA 138 :GFSAAISATDSGAKVILIEK T0316 46 :ENG 1q9iA 158 :EPV T0316 52 :ATEDYKDVVAVADQI 1q9iA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1q9iA 202 :NI T0316 76 :EKEYWDRVFEYFL 1q9iA 205 :DPALVKVLSSHSK T0316 89 :AEYRAGRTPNPD 1q9iA 221 :DWMTAMGADLTD T0316 103 :CNKEI 1q9iA 253 :VGAHV T0316 109 :FKAFLDYAITLGAD 1q9iA 258 :VQVLYDNAVKRNID T0316 133 :ARDEDGT 1q9iA 282 :LKDDKGT T0316 143 :LRGV 1q9iA 438 :LGVA T0316 147 :DNGKDQTY 1q9iA 445 :DSLVKLGK T0316 156 :LSQLSQEQLQKTM 1q9iA 453 :MEGIDGKALTETV T0316 177 :PEVRRLAEEAGLSTAKKKDS 1q9iA 466 :ARYNSLVSSGKDTDFERPNL T0316 228 :RDMGEHAGLMYYTIGQRGGLGIGG 1q9iA 486 :PRALNEGNYYAIEVTPGVHHTMGG T0316 272 :LY 1q9iA 510 :VM T0316 341 :TPGQAVVFYDGEECLGG 1q9iA 512 :IDTKAEVMNAKKQVIPG Number of specific fragments extracted= 18 number of extra gaps= 1 total=2156 Number of alignments=136 # 1q9iA read from 1q9iA/merged-good-all-a2m # found chain 1q9iA in template set Warning: unaligning (T0316)N47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q9iA)G162 Warning: unaligning (T0316)G48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q9iA)G162 T0316 6 :KTR 1q9iA 124 :HDT T0316 9 :VVVGMSGGV 1q9iA 129 :VVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFMKN 1q9iA 138 :GFSAAISATDSGAKVILIEKEP T0316 46 :E 1q9iA 160 :V T0316 49 :V 1q9iA 163 :G T0316 50 :C 1q9iA 184 :K T0316 52 :ATEDYKDVVAVADQI 1q9iA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1q9iA 202 :NI T0316 75 :FEKEYWDRVFEYFLA 1q9iA 204 :NDPALVKVLSSHSKD T0316 90 :EYRAGRTPNPD 1q9iA 222 :WMTAMGADLTD T0316 103 :CNKEI 1q9iA 253 :VGAHV T0316 109 :FKAFLDYAITLGADY 1q9iA 258 :VQVLYDNAVKRNIDL T0316 139 :TVH 1q9iA 442 :PTA T0316 146 :VDNGK 1q9iA 445 :DSLVK T0316 153 :TYFLSQLSQEQLQKTM 1q9iA 450 :LGKMEGIDGKALTETV T0316 177 :PEVRRLAEEAGLSTAKKK 1q9iA 466 :ARYNSLVSSGKDTDFERP T0316 335 :EPQRAITPGQAVV 1q9iA 484 :NLPRALNEGNYYA T0316 348 :FYDGEEC 1q9iA 498 :EVTPGVH T0316 355 :LGGGLIDN 1q9iA 507 :MGGVMIDT T0316 363 :AYRDGQVCQY 1q9iA 519 :MNAKKQVIPG Number of specific fragments extracted= 20 number of extra gaps= 1 total=2176 Number of alignments=137 # 1q9iA read from 1q9iA/merged-good-all-a2m # found chain 1q9iA in template set Warning: unaligning (T0316)D42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q9iA)G162 Warning: unaligning (T0316)D43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q9iA)G162 T0316 3 :DNSKTRVVVGMSGGVD 1q9iA 123 :PHDTVDVVVVGSGGAG T0316 20 :SVTALLLKEQGYDVIGIFMKNW 1q9iA 139 :FSAAISATDSGAKVILIEKEPV T0316 52 :ATEDYKDVVAVADQI 1q9iA 185 :ITDSPELMFEDTMKG T0316 75 :FEKEYWDRVFEYFL 1q9iA 204 :NDPALVKVLSSHSK T0316 89 :AEYRAGRTPNPDVM 1q9iA 221 :DWMTAMGADLTDVG T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYF 1q9iA 255 :AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV T0316 156 :LSQLSQEQLQKTMFPLGHLE 1q9iA 315 :GFAKNNERVAKLDPSLKGFI T0316 178 :EVRRLAEEAGL 1q9iA 344 :DGLDVAENAGG T0316 221 :RMMTVD 1q9iA 355 :ALKDMQ T0316 230 :MGEH 1q9iA 362 :IQAH Number of specific fragments extracted= 10 number of extra gaps= 1 total=2186 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wy5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wy5A expands to /projects/compbio/data/pdb/1wy5.pdb.gz 1wy5A:# T0316 read from 1wy5A/merged-good-all-a2m # 1wy5A read from 1wy5A/merged-good-all-a2m # adding 1wy5A to template set # found chain 1wy5A in template set T0316 7 :TRVVVGMSGGVDSSVTALLLKEQ 1wy5A 25 :RRVLIAFSGGVDSVVLTDVLLKL T0316 30 :G 1wy5A 49 :N T0316 31 :YDVIGIFM 1wy5A 54 :KEVALAHF T0316 46 :ENGVCT 1wy5A 62 :NHMLRE T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1wy5A 69 :AERDEEFCKEFAKERNMKIFVGKED T0316 87 :FLAEYRAGRTP 1wy5A 94 :VRAFAKENRMS T0316 100 :DVMCNKEIKFKAFLDYAITLGADYVATGHYA 1wy5A 105 :LEEAGRFLRYKFLKEILESEGFDCIATAHHL T0316 134 :RDEDGTVHM 1wy5A 136 :NDLLETSLL T0316 143 :LR 1wy5A 148 :RG T0316 145 :GVDNGKDQTYFL 1wy5A 151 :GLDGLIGFLPKE T0316 162 :E 1wy5A 163 :E T0316 166 :KTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPG 1wy5A 164 :VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINEN T0316 226 :DGRDMG 1wy5A 292 :KGGEVN Number of specific fragments extracted= 13 number of extra gaps= 0 total=2199 Number of alignments=139 # 1wy5A read from 1wy5A/merged-good-all-a2m # found chain 1wy5A in template set T0316 3 :DNSKTRVVVGMSGGVDSSVTALLLKE 1wy5A 21 :FSGERRVLIAFSGGVDSVVLTDVLLK T0316 29 :QG 1wy5A 48 :KN T0316 31 :YDVIGIFM 1wy5A 54 :KEVALAHF T0316 44 :TDENGVC 1wy5A 62 :NHMLRES T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1wy5A 69 :AERDEEFCKEFAKERNMKIFVGKED T0316 84 :FEYFLAE 1wy5A 94 :VRAFAKE T0316 94 :GR 1wy5A 101 :NR T0316 97 :PNPDVMCNKE 1wy5A 103 :MSLEEAGRFL T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 1wy5A 113 :RYKFLKEILESEGFDCIATAHHLNDLLE T0316 137 :DGTVHMLRGVDNGK 1wy5A 141 :TSLLFFTRGTGLDG T0316 164 :LQ 1wy5A 155 :LI T0316 167 :TMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQP 1wy5A 165 :IRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINE T0316 220 :GRMMTVD 1wy5A 291 :EKGGEVN T0316 227 :GRDMGEHAGLM 1wy5A 299 :GKGKVLKRKER Number of specific fragments extracted= 14 number of extra gaps= 0 total=2213 Number of alignments=140 # 1wy5A read from 1wy5A/merged-good-all-a2m # found chain 1wy5A in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQG 1wy5A 23 :GERRVLIAFSGGVDSVVLTDVLLKLK T0316 31 :YDVIGIFMKNWDDTDE 1wy5A 53 :LKEVALAHFNHMLRES T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1wy5A 69 :AERDEEFCKEFAKERNMKIFVGKED T0316 87 :FLAEYRAGRTP 1wy5A 94 :VRAFAKENRMS T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARV 1wy5A 109 :GRFLRYKFLKEILESEGFDCIATAHHLND T0316 153 :TYFLSQLSQEQ 1wy5A 144 :LFFTRGTGLDG T0316 166 :KTMF 1wy5A 155 :LIGF T0316 170 :PLGHLEKPEVRRLAEEAGLSTAKKKD 1wy5A 168 :PLYYVKRSEIEEYAKFKGLRWVEDET Number of specific fragments extracted= 8 number of extra gaps= 0 total=2221 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sur/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sur expands to /projects/compbio/data/pdb/1sur.pdb.gz 1sur:Warning: there is no chain 1sur will retry with 1surA # T0316 read from 1sur/merged-good-all-a2m # 1sur read from 1sur/merged-good-all-a2m # adding 1sur to template set # found chain 1sur in template set T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQ 1sur 44 :PGEYVLSSSFGIQAAVSLHLVNQI T0316 30 :GYDVIG 1sur 70 :DIPVIL T0316 38 :M 1sur 76 :T T0316 46 :ENGVC 1sur 77 :DTGYL T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1sur 82 :FPETYRFIDELTDKLKLNLKVYRAT T0316 77 :KEYWDRV 1sur 110 :AWQEARY T0316 89 :AEYRA 1sur 128 :EKYND T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHM 1sur 133 :INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVL T0316 143 :LR 1sur 173 :RG T0316 166 :KTMFPLGHLEKPEVRRLAEEAGLSTAKKK 1sur 176 :FKVLPIIDWDNRTIYQYLQKHGLKYHPLW Number of specific fragments extracted= 10 number of extra gaps= 0 total=2231 Number of alignments=142 # 1sur read from 1sur/merged-good-all-a2m # found chain 1sur in template set T0316 6 :KTRVVVGMSGGVDSSVTALLLKE 1sur 44 :PGEYVLSSSFGIQAAVSLHLVNQ T0316 29 :QGYD 1sur 69 :PDIP T0316 35 :GIFM 1sur 73 :VILT T0316 46 :ENGVC 1sur 77 :DTGYL T0316 52 :ATEDYKDVVAVADQIGIPYYSVNFE 1sur 82 :FPETYRFIDELTDKLKLNLKVYRAT T0316 77 :KEYWDRV 1sur 110 :AWQEARY T0316 84 :FEYFLAEY 1sur 123 :GVEGIEKY T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGK 1sur 131 :NDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFK T0316 168 :MFPLGHLEKPEVRRLAEEAGLSTA 1sur 178 :VLPIIDWDNRTIYQYLQKHGLKYH T0316 209 :NFLSNYLPAQP 1sur 202 :PLWDEGYLSVG Number of specific fragments extracted= 10 number of extra gaps= 0 total=2241 Number of alignments=143 # 1sur read from 1sur/merged-good-all-a2m # found chain 1sur in template set T0316 6 :KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKN 1sur 44 :PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDT T0316 49 :VCTATEDYKDVVAVADQIGIPYYSVNF 1sur 79 :GYLFPETYRFIDELTDKLKLNLKVYRA T0316 76 :EKEYWDR 1sur 109 :AAWQEAR T0316 88 :LAEYRA 1sur 127 :IEKYND T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVD 1sur 133 :INKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRG T0316 168 :MFPLGHLEKPEVRRLAEEAGLSTA 1sur 178 :VLPIIDWDNRTIYQYLQKHGLKYH T0316 209 :NFLSNYLPAQP 1sur 202 :PLWDEGYLSVG Number of specific fragments extracted= 7 number of extra gaps= 0 total=2248 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gpmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gpmA expands to /projects/compbio/data/pdb/1gpm.pdb.gz 1gpmA:# T0316 read from 1gpmA/merged-good-all-a2m # 1gpmA read from 1gpmA/merged-good-all-a2m # adding 1gpmA to template set # found chain 1gpmA in template set Warning: unaligning (T0316)H141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gpmA)K369 Warning: unaligning (T0316)Q163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gpmA)K369 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1gpmA 226 :GDDKVILGLSGGVDSSVTAMLLHRA T0316 30 :GYDVIGIFM 1gpmA 252 :GKNLTCVFV T0316 46 :ENGVC 1gpmA 261 :DNGLL T0316 52 :ATEDYKDVVAVAD 1gpmA 266 :RLNEAEQVLDMFG T0316 65 :QIGIPYYSVNFEKEYWDRV 1gpmA 280 :HFGLNIVHVPAEDRFLSAL T0316 84 :FEYF 1gpmA 304 :PEAK T0316 104 :NKEIK 1gpmA 308 :RKIIG T0316 110 :KAFLDYAITL 1gpmA 313 :RVFVEVFDEE T0316 120 :GADYVATGHYA 1gpmA 328 :DVKWLAQGTIY T0316 134 :RDEDGTV 1gpmA 339 :PDVIESA T0316 164 :L 1gpmA 370 :M T0316 166 :KTMFPLGHLEKPEVRRLAEEAGLST 1gpmA 371 :GLVEPLKELFKDEVRKIGLELGLPY T0316 191 :AKKKDS 1gpmA 401 :HPFPGP T0316 197 :TGICFIGEKN 1gpmA 408 :LGVRVLGEVK T0316 208 :KNFLSNYLP 1gpmA 418 :KEYCDLLRR T0316 226 :DGRDMGEHAGLMYYT 1gpmA 434 :ELRKADLYDKVSQAF T0316 241 :IGQRGGLG 1gpmA 451 :FLPVRSVG T0316 249 :IGGQHGGDNAPWFVVGKDLSKNILYVGQGFY 1gpmA 460 :MGDGRKYDWVVSLRAVETIDFMTAHWAHLPY T0316 280 :HDSLMSTSLEASQVHFTREMPEEFTL 1gpmA 497 :SNRIINEVNGISRVVYDISGKPPATI Number of specific fragments extracted= 19 number of extra gaps= 0 total=2267 Number of alignments=145 # 1gpmA read from 1gpmA/merged-good-all-a2m # found chain 1gpmA in template set Warning: unaligning (T0316)Q161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gpmA)K369 T0316 5 :SKTRVVVGMSGGVDSSVTALLLKE 1gpmA 226 :GDDKVILGLSGGVDSSVTAMLLHR T0316 29 :QGYDVIGIFM 1gpmA 251 :IGKNLTCVFV T0316 46 :ENGVC 1gpmA 261 :DNGLL T0316 52 :ATEDYKDVVAVA 1gpmA 266 :RLNEAEQVLDMF T0316 64 :DQIGIPYYSVNFEKEYWDRV 1gpmA 279 :DHFGLNIVHVPAEDRFLSAL T0316 93 :AGRTP 1gpmA 299 :AGEND T0316 100 :DVMCNKEI 1gpmA 304 :PEAKRKII T0316 109 :FKAFLDYAITL 1gpmA 312 :GRVFVEVFDEE T0316 120 :GADYVATGHYARVARDE 1gpmA 328 :DVKWLAQGTIYPDVIES T0316 165 :QKTMFPLGHLEKPEVRRLAEEAGLST 1gpmA 370 :MGLVEPLKELFKDEVRKIGLELGLPY T0316 191 :AKKKDSTGICFIG 1gpmA 399 :YRHPFPGPGLGVR T0316 216 :PAQP 1gpmA 414 :GEVK T0316 220 :GRMMTVD 1gpmA 439 :DLYDKVS T0316 235 :G 1gpmA 446 :Q T0316 240 :TIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNI 1gpmA 447 :AFTVFLPVRSVGVMGDGRKYDWVVSLRAVETI T0316 272 :LYVGQGFYHDSLMSTSLEA 1gpmA 482 :TAHWAHLPYDFLGRVSNRI T0316 291 :SQVHFT 1gpmA 505 :NGISRV T0316 297 :REMPEEFTLE 1gpmA 514 :ISGKPPATIE Number of specific fragments extracted= 18 number of extra gaps= 0 total=2285 Number of alignments=146 # 1gpmA read from 1gpmA/merged-good-all-a2m # found chain 1gpmA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLLKEQ 1gpmA 226 :GDDKVILGLSGGVDSSVTAMLLHRA T0316 30 :GYDVIGIFMKN 1gpmA 252 :GKNLTCVFVDN T0316 49 :VCTATEDYKDVVAVA 1gpmA 263 :GLLRLNEAEQVLDMF T0316 64 :DQIGIPYYSVNFEKEYWDRV 1gpmA 279 :DHFGLNIVHVPAEDRFLSAL T0316 93 :AGRT 1gpmA 299 :AGEN T0316 104 :NKEIKFKAFLDYAIT 1gpmA 303 :DPEAKRKIIGRVFVE T0316 120 :GADYVATGHYA 1gpmA 328 :DVKWLAQGTIY T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1gpmA 373 :VEPLKELFKDEVRKIGLELGLP T0316 208 :KNFLS 1gpmA 395 :YDMLY T0316 214 :YLPAQPG 1gpmA 400 :RHPFPGP T0316 251 :GQHGGDNAPWFVVGKD 1gpmA 439 :DLYDKVSQAFTVFLPV T0316 296 :TREMPE 1gpmA 455 :RSVGVM T0316 302 :EFTLECTAKFRY 1gpmA 463 :GRKYDWVVSLRA T0316 322 :VH 1gpmA 475 :VE T0316 324 :VKGEKTE 1gpmA 478 :IDFMTAH Number of specific fragments extracted= 15 number of extra gaps= 0 total=2300 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kssA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kssA expands to /projects/compbio/data/pdb/1kss.pdb.gz 1kssA:# T0316 read from 1kssA/merged-good-all-a2m # 1kssA read from 1kssA/merged-good-all-a2m # adding 1kssA to template set # found chain 1kssA in template set T0316 7 :TR 1kssA 125 :DT T0316 9 :VVVGMSGGV 1kssA 129 :VVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFMKN 1kssA 138 :GFSAAISATDSGAKVILIEKEP T0316 48 :GV 1kssA 160 :VI T0316 52 :ATEDYKDVVAVADQI 1kssA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1kssA 202 :NI T0316 76 :EKEYWDRVFEYFL 1kssA 205 :DPALVKVLSSHSK T0316 89 :AEYRAGRTPNPD 1kssA 221 :DWMTAMGADLTD T0316 101 :VMCNKEI 1kssA 251 :AGVGAHV T0316 109 :FKAFLDYAITLGAD 1kssA 258 :VQVLYDNAVKRNID T0316 135 :DEDGT 1kssA 284 :DDKGT T0316 143 :LRGV 1kssA 438 :LGVA T0316 147 :DNGKDQTY 1kssA 445 :DSLVKLGK T0316 156 :LSQLSQEQLQKTM 1kssA 453 :MEGIDGKALTETV T0316 177 :PEVRRLAEEAGLSTAKKKD 1kssA 466 :ARYNSLVSSGKDTDFERPN T0316 227 :GRDMGEHAGLMYYTIGQRGGLGIGG 1kssA 485 :LPRALNEGNYYAIEVTPGVHATMGG T0316 272 :LYVGQ 1kssA 510 :VMIDT T0316 344 :QAVVFYDGEECLG 1kssA 515 :KAEVMNAKKQVIP Number of specific fragments extracted= 18 number of extra gaps= 0 total=2318 Number of alignments=148 # 1kssA read from 1kssA/merged-good-all-a2m # found chain 1kssA in template set T0316 6 :KTRVVVGMSGGV 1kssA 126 :TVDVVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFM 1kssA 138 :GFSAAISATDSGAKVILIEK T0316 39 :KNWDDTD 1kssA 159 :PVIGGNA T0316 50 :C 1kssA 184 :K T0316 52 :ATEDYKDVVAVADQI 1kssA 185 :ITDSPELMFEDTMKG T0316 67 :GI 1kssA 202 :NI T0316 75 :FEKEYWDRVFEYFLA 1kssA 204 :NDPALVKVLSSHSKD T0316 90 :EYRAGRTPNPD 1kssA 222 :WMTAMGADLTD T0316 101 :VMCNKEI 1kssA 251 :AGVGAHV T0316 109 :FKAFLDYAITLGADY 1kssA 258 :VQVLYDNAVKRNIDL T0316 220 :GR 1kssA 455 :GI T0316 279 :YHDSLMSTSLEASQVHFTREMPEEF 1kssA 457 :DGKALTETVARYNSLVSSGKDTDFE T0316 333 :FAEPQRAITPGQAVV 1kssA 482 :RPNLPRALNEGNYYA T0316 348 :FYDGEEC 1kssA 498 :EVTPGVH T0316 355 :LGGGLIDN 1kssA 507 :MGGVMIDT T0316 363 :AYRDGQVCQY 1kssA 519 :MNAKKQVIPG Number of specific fragments extracted= 16 number of extra gaps= 0 total=2334 Number of alignments=149 # 1kssA read from 1kssA/merged-good-all-a2m # found chain 1kssA in template set T0316 2 :SDNSKTRVVVGMSGGV 1kssA 122 :APHDTVDVVVVGSGGA T0316 19 :SSVTALLLKEQGYDVIGIFMKNWD 1kssA 138 :GFSAAISATDSGAKVILIEKEPVI T0316 46 :ENGVCTATEDYKDVVAVADQ 1kssA 183 :KKITDSPELMFEDTMKGGQN T0316 74 :NFEKEYWDRVFEYFLAEYR 1kssA 203 :INDPALVKVLSSHSKDSVD T0316 93 :AGRTPNPDVM 1kssA 225 :AMGADLTDVG T0316 106 :EIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYF 1kssA 255 :AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV T0316 156 :LSQLSQEQLQKTMFPLGHLE 1kssA 315 :GFAKNNERVAKLDPSLKGFI T0316 178 :EVRRLAEEAGLS 1kssA 344 :DGLDVAENAGGA T0316 222 :M 1kssA 356 :L Number of specific fragments extracted= 9 number of extra gaps= 0 total=2343 Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wxiA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wxiA expands to /projects/compbio/data/pdb/1wxi.pdb.gz 1wxiA:# T0316 read from 1wxiA/merged-good-all-a2m # 1wxiA read from 1wxiA/merged-good-all-a2m # adding 1wxiA to template set # found chain 1wxiA in template set Warning: unaligning (T0316)D195 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wxiA)D223 T0316 5 :SK 1wxiA 38 :PF T0316 7 :TRVVVGMSGGVDSSVTALLL 1wxiA 41 :KSLVLGISGGQDSTLAGKLC T0316 27 :KEQ 1wxiA 69 :LET T0316 30 :GYDVIGIFM 1wxiA 75 :SLQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 1wxiA 84 :PYGVQADEQDCQDAIAF T0316 66 :IGI 1wxiA 101 :IQP T0316 69 :PYYSVNFEKEYW 1wxiA 105 :RVLTVNIKGAVL T0316 85 :E 1wxiA 117 :A T0316 87 :FLAEYRA 1wxiA 118 :SEQALRE T0316 94 :GRTPN 1wxiA 126 :GIELS T0316 104 :NKEIKFKAFLDYAITLG 1wxiA 138 :KARERMKAQYSIAGMTS T0316 127 :GHYA 1wxiA 155 :GVVV T0316 134 :RDEDGTVHMLRGVDNGKDQTY 1wxiA 159 :GTDHAAEAITGFFTKYGDGGT T0316 167 :TMFPLGHLEKPEVRRLAEEAGLSTAK 1wxiA 180 :DINPLYRLNKRQGKQLLAALACPEHL T0316 193 :KK 1wxiA 207 :KK Number of specific fragments extracted= 15 number of extra gaps= 0 total=2358 Number of alignments=151 # 1wxiA read from 1wxiA/merged-good-all-a2m # found chain 1wxiA in template set Warning: unaligning (T0316)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wxiA)D223 T0316 4 :NSKTRVVVGMSGGVDSSVTALLLKEQ 1wxiA 38 :PFIKSLVLGISGGQDSTLAGKLCQMA T0316 30 :GYDVIGIFM 1wxiA 75 :SLQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 1wxiA 84 :PYGVQADEQDCQDAIAF T0316 66 :IGI 1wxiA 101 :IQP T0316 69 :PYYSVNFE 1wxiA 105 :RVLTVNIK T0316 82 :RVFEYFLAEYRA 1wxiA 113 :GAVLASEQALRE T0316 94 :GRTPNPD 1wxiA 126 :GIELSDF T0316 101 :VMCNKEIKFKAFLDYAITLG 1wxiA 135 :GNEKARERMKAQYSIAGMTS T0316 123 :YVATGH 1wxiA 155 :GVVVGT T0316 129 :YARVARDE 1wxiA 162 :HAAEAITG T0316 140 :VHMLRGVDNGK 1wxiA 170 :FFTKYGDGGTD T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 1wxiA 181 :INPLYRLNKRQGKQLLAALACP T0316 190 :TAKK 1wxiA 205 :LYKK T0316 209 :NFLSNYLPA 1wxiA 232 :DNIDDYLEG T0316 276 :QGFYHDSLMSTSLEASQVHFTREMPEEF 1wxiA 241 :KNVPQQVARTIENWYLKTEHKRRPPITV Number of specific fragments extracted= 15 number of extra gaps= 0 total=2373 Number of alignments=152 # 1wxiA read from 1wxiA/merged-good-all-a2m # found chain 1wxiA in template set Warning: unaligning (T0316)K194 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wxiA)D223 T0316 3 :DNSKTRVVVGMSGGVDSSVTALLLKEQ 1wxiA 37 :YPFIKSLVLGISGGQDSTLAGKLCQMA T0316 30 :GYDVIGIFMKNWDDTD 1wxiA 75 :SLQFIAVRLPYGVQAD T0316 53 :TEDYKDVVAVA 1wxiA 91 :EQDCQDAIAFI T0316 67 :GI 1wxiA 102 :QP T0316 69 :PYYSVNFEKEYWDR 1wxiA 105 :RVLTVNIKGAVLAS T0316 87 :FLAEYRAGRTPN 1wxiA 119 :EQALREAGIELS T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARV 1wxiA 138 :KARERMKAQYSIAGMTSGVVVGTDHAAEA T0316 145 :GVDNGKDQTY 1wxiA 170 :FFTKYGDGGT T0316 167 :TMFPLGHLEKPEVRRLAEEAGL 1wxiA 180 :DINPLYRLNKRQGKQLLAALAC T0316 189 :STAKK 1wxiA 204 :HLYKK Number of specific fragments extracted= 10 number of extra gaps= 0 total=2383 Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nsyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2nsyA expands to /projects/compbio/data/pdb/2nsy.pdb.gz 2nsyA:Skipped atom 125, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 173, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 175, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 798, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 800, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 2000, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 2002, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 2004, because occupancy 0.500 <= existing 0.500 in 2nsyA Skipped atom 2006, because occupancy 0.500 <= existing 0.500 in 2nsyA # T0316 read from 2nsyA/merged-good-all-a2m # 2nsyA read from 2nsyA/merged-good-all-a2m # adding 2nsyA to template set # found chain 2nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLL 2nsyA 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQG 2nsyA 66 :REEG T0316 31 :YDVIGIFM 2nsyA 72 :AQFIAVRL T0316 46 :ENGVCTATEDYKDVVAV 2nsyA 80 :PHGTQQDEDDAQLALKF T0316 66 :IGI 2nsyA 97 :IKP T0316 69 :PYYSVNFEKEY 2nsyA 101 :KSWKFDIKSTV T0316 85 :EYFLAEYRA 2nsyA 112 :SAFSDQYQQ T0316 94 :GRTPNPD 2nsyA 122 :TGDQLTD T0316 104 :NKE 2nsyA 136 :ART T0316 108 :KFKAFLDYAITLGADYVATGHY 2nsyA 139 :RMIAQYAIGGQEGLLVLGTDHA T0316 139 :TVHMLRGVDNGKDQTY 2nsyA 161 :AEAVTGFFTKYGDGGA T0316 167 :TMFPLGHLEKPEVRRLAEEAGLST 2nsyA 177 :DLLPLTGLTKRQGRTLLKELGAPE T0316 191 :AKKKDSTG 2nsyA 211 :LLDEKPQQ Number of specific fragments extracted= 13 number of extra gaps= 0 total=2396 Number of alignments=154 # 2nsyA read from 2nsyA/merged-good-all-a2m # found chain 2nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLL 2nsyA 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQGYD 2nsyA 66 :REEGGD T0316 33 :VIGIFM 2nsyA 74 :FIAVRL T0316 46 :ENGVCTATEDYKDVVAVA 2nsyA 80 :PHGTQQDEDDAQLALKFI T0316 67 :GI 2nsyA 98 :KP T0316 69 :PYYSVNFE 2nsyA 101 :KSWKFDIK T0316 82 :RVFEYFLAEYRAGRTPNPD 2nsyA 109 :STVSAFSDQYQQETGDQLT T0316 105 :KE 2nsyA 137 :RT T0316 108 :KFKAFLDYAITLGADYVATGHYARVARD 2nsyA 139 :RMIAQYAIGGQEGLLVLGTDHAAEAVTG T0316 140 :VHMLRGVDNGK 2nsyA 167 :FFTKYGDGGAD T0316 168 :MFPLGHLEKPEVRRLAEEAGLS 2nsyA 178 :LLPLTGLTKRQGRTLLKELGAP T0316 193 :KKDS 2nsyA 205 :KEPT T0316 212 :SNYLPAQP 2nsyA 209 :ADLLDEKP T0316 220 :GR 2nsyA 237 :GK T0316 277 :GFYHDSLMSTSLEASQVHFTREMPEEF 2nsyA 239 :EVSAKVSEALEKRYSMTEHKRQVPASM Number of specific fragments extracted= 15 number of extra gaps= 0 total=2411 Number of alignments=155 # 2nsyA read from 2nsyA/merged-good-all-a2m # found chain 2nsyA in template set T0316 5 :SKTRVVVGMSGGVDSSVTALLL 2nsyA 37 :GAKGFVLGISGGQDSTLAGRLA T0316 27 :KEQGYDVIGIFMKNWDDTD 2nsyA 66 :REEGGDAQFIAVRLPHGTQ T0316 54 :EDYKDVVAVADQIGI 2nsyA 85 :QDEDDAQLALKFIKP T0316 69 :PYYSVNFEKEYWDRVFEYFLAE 2nsyA 101 :KSWKFDIKSTVSAFSDQYQQET T0316 94 :GRTPN 2nsyA 123 :GDQLT T0316 104 :NKEIKFKAFLDYAITLGADYVATGHYARVA 2nsyA 135 :KARTRMIAQYAIGGQEGLLVLGTDHAAEAV T0316 145 :GVDNGKDQT 2nsyA 167 :FFTKYGDGG T0316 167 :TMFPLGHLEKPEVRRLAEEAGLS 2nsyA 177 :DLLPLTGLTKRQGRTLLKELGAP Number of specific fragments extracted= 8 number of extra gaps= 0 total=2419 Number of alignments=156 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0316//projects/compbio/experiments/protein-predict/casp7/T0316/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0316//projects/compbio/experiments/protein-predict/casp7/T0316/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0316/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0316/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)T22.CB) [> 3.7659 = 6.2765 < 8.1595] w=1.0000 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)I36.CB) [> 3.8501 = 6.4169 < 8.3420] w=0.9923 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)I36.CB) [> 4.0387 = 6.7311 < 8.7504] w=0.9846 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)A23.CB) [> 3.4106 = 5.6844 < 7.3897] w=0.9619 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)G35.CA) [> 3.6929 = 6.1548 < 8.0013] w=0.9618 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)I36.CB) [> 3.1250 = 5.2084 < 6.7709] w=0.9459 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)V33.CB) [> 3.3435 = 5.5725 < 7.2442] w=0.9414 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)G35.CA) [> 3.1532 = 5.2553 < 6.8319] w=0.9384 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)I34.CB) [> 3.7512 = 6.2520 < 8.1277] w=0.9277 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)I34.CB) [> 3.1112 = 5.1854 < 6.7410] w=0.9259 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)L26.CB) [> 3.3260 = 5.5433 < 7.2063] w=0.9231 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)I34.CB) [> 4.1910 = 6.9850 < 9.0805] w=0.9183 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)F37.CB) [> 3.9505 = 6.5842 < 8.5594] w=0.9083 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)Y70.CB) [> 3.5756 = 5.9594 < 7.7472] w=0.8727 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)V33.CB) [> 3.6904 = 6.1508 < 7.9960] w=0.8692 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)Y71.CB) [> 3.8678 = 6.4463 < 8.3802] w=0.8586 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)D32.CB) [> 2.9658 = 4.9431 < 6.4260] w=0.8263 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)F37.CB) [> 3.5652 = 5.9420 < 7.7246] w=0.8250 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)Y71.CB) [> 3.3074 = 5.5124 < 7.1660] w=0.8102 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)L26.CB) [> 3.9634 = 6.6057 < 8.5875] w=0.8048 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)S72.CB) [> 3.3445 = 5.5742 < 7.2464] w=0.7981 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)Y71.CB) [> 3.8980 = 6.4967 < 8.4457] w=0.7797 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)I34.CB) [> 4.2557 = 7.0928 < 9.2206] w=0.7774 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)G35.CA) [> 3.6136 = 6.0226 < 7.8294] w=0.7642 to align # Constraint # added constraint: constraint((T0316)A23.CB, (T0316)V33.CB) [> 3.7319 = 6.2199 < 8.0859] w=0.7638 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)I36.CB) [> 3.9982 = 6.6637 < 8.6628] w=0.7634 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)Y31.CB) [> 3.2773 = 5.4621 < 7.1008] w=0.7530 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)V73.CB) [> 4.0943 = 6.8238 < 8.8709] w=0.7409 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)Y70.CB) [> 4.0968 = 6.8280 < 8.8764] w=0.7233 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)Y31.CB) [> 4.0953 = 6.8255 < 8.8731] w=0.7229 to align # Constraint # added constraint: constraint((T0316)A23.CB, (T0316)I66.CB) [> 3.6320 = 6.0533 < 7.8693] w=0.7117 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)V73.CB) [> 3.5799 = 5.9664 < 7.7564] w=0.7074 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)V33.CB) [> 4.1444 = 6.9074 < 8.9796] w=0.7055 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)I68.CB) [> 3.3674 = 5.6123 < 7.2961] w=0.7036 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)I68.CB) [> 3.2854 = 5.4758 < 7.1185] w=0.6954 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)Y70.CB) [> 4.0088 = 6.6813 < 8.6857] w=0.6889 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)V62.CB) [> 3.6481 = 6.0801 < 7.9042] w=0.6843 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)D32.CB) [> 3.8919 = 6.4864 < 8.4324] w=0.6819 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)P69.CB) [> 3.6584 = 6.0974 < 7.9266] w=0.6803 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)P69.CB) [> 3.3839 = 5.6399 < 7.3319] w=0.6724 to align # Constraint # added constraint: constraint((T0316)A23.CB, (T0316)I68.CB) [> 4.0118 = 6.6864 < 8.6923] w=0.6566 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)V33.CB) [> 4.6052 = 7.6753 < 9.9779] w=0.6549 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)V73.CB) [> 3.6852 = 6.1420 < 7.9846] w=0.6530 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)D32.CB) [> 4.1567 = 6.9279 < 9.0062] w=0.6419 to align # Constraint # added constraint: constraint((T0316)V60.CB, (T0316)Y70.CB) [> 3.6580 = 6.0967 < 7.9257] w=0.6417 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)M38.CB) [> 3.8472 = 6.4120 < 8.3356] w=0.6228 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)F75.CB) [> 3.7302 = 6.2170 < 8.0821] w=0.6227 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)V59.CB) [> 3.4752 = 5.7919 < 7.5295] w=0.6119 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)A116.CB) [> 3.5987 = 5.9978 < 7.7971] w=0.6061 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)S72.CB) [> 4.0328 = 6.7213 < 8.7377] w=0.5890 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)Y71.CB) [> 3.8036 = 6.3393 < 8.2411] w=0.5874 to align # Constraint # added constraint: constraint((T0316)A23.CB, (T0316)G35.CA) [> 4.1124 = 6.8540 < 8.9102] w=0.5784 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)Y31.CB) [> 3.6165 = 6.0274 < 7.8357] w=0.5658 to align # Constraint # added constraint: constraint((T0316)K27.CB, (T0316)I68.CB) [> 4.0096 = 6.6827 < 8.6875] w=0.5639 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)V124.CB) [> 4.0267 = 6.7112 < 8.7245] w=0.5616 to align # Constraint # added constraint: constraint((T0316)Y71.CB, (T0316)Y115.CB) [> 3.6675 = 6.1126 < 7.9463] w=0.5552 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)V124.CB) [> 3.2614 = 5.4357 < 7.0664] w=0.5537 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)Y123.CB) [> 3.2676 = 5.4461 < 7.0799] w=0.5537 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)A121.CB) [> 2.9302 = 4.8836 < 6.3487] w=0.5489 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)Y56.CB) [> 3.8296 = 6.3827 < 8.2975] w=0.5482 to align # Constraint # added constraint: constraint((T0316)T22.CB, (T0316)A125.CB) [> 3.8848 = 6.4747 < 8.4171] w=0.5459 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)Y123.CB) [> 4.0910 = 6.8183 < 8.8637] w=0.5383 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)I66.CB) [> 3.5933 = 5.9889 < 7.7855] w=0.5381 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)S72.CB) [> 4.4124 = 7.3540 < 9.5602] w=0.5279 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)A23.CB) [> 3.4839 = 5.8065 < 7.5484] w=0.5273 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)L119.CB) [> 3.6152 = 6.0254 < 7.8330] w=0.5270 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)G35.CA) [> 3.4399 = 5.7332 < 7.4531] w=0.5255 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)A125.CB) [> 3.1931 = 5.3218 < 6.9183] w=0.5150 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)G120.CA) [> 3.7464 = 6.2440 < 8.1172] w=0.5096 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)D122.CB) [> 3.6812 = 6.1353 < 7.9759] w=0.5039 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)D122.CB) [> 4.0578 = 6.7630 < 8.7919] w=0.5032 to align # Constraint # added constraint: constraint((T0316)K27.CB, (T0316)I66.CB) [> 3.4974 = 5.8290 < 7.5777] w=0.4925 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)A121.CB) [> 3.7198 = 6.1996 < 8.0595] w=0.4884 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)L119.CB) [> 3.9717 = 6.6195 < 8.6054] w=0.4883 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)V124.CB) [> 3.9689 = 6.6148 < 8.5992] w=0.4847 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)L119.CB) [> 4.0830 = 6.8050 < 8.8464] w=0.4807 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)A121.CB) [> 2.8008 = 4.6680 < 6.0684] w=0.4806 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)V124.CB) [> 4.3000 = 7.1667 < 9.3168] w=0.4763 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)Y70.CB) [> 4.2971 = 7.1619 < 9.3104] w=0.4690 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)M38.CB) [> 3.9511 = 6.5851 < 8.5607] w=0.4634 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)V59.CB) [> 3.3217 = 5.5363 < 7.1971] w=0.4633 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)F37.CB) [> 3.7889 = 6.3148 < 8.2092] w=0.4613 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)A121.CB) [> 3.8212 = 6.3686 < 8.2792] w=0.4574 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)A125.CB) [> 4.2733 = 7.1221 < 9.2588] w=0.4456 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)A63.CB) [> 4.1108 = 6.8514 < 8.9068] w=0.4396 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)A125.CB) [> 3.4542 = 5.7571 < 7.4842] w=0.4378 to align # Constraint # added constraint: constraint((T0316)A23.CB, (T0316)A63.CB) [> 4.0177 = 6.6962 < 8.7050] w=0.4312 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)V59.CB) [> 2.8861 = 4.8102 < 6.2533] w=0.4248 to align # Constraint # added constraint: constraint((T0316)V60.CB, (T0316)S72.CB) [> 4.0646 = 6.7744 < 8.8067] w=0.4234 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)F37.CB) [> 4.1518 = 6.9197 < 8.9956] w=0.4226 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)T126.CB) [> 3.5189 = 5.8649 < 7.6243] w=0.4223 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)F112.CB) [> 3.8725 = 6.4542 < 8.3905] w=0.4212 to align # Constraint # added constraint: constraint((T0316)K27.CB, (T0316)G67.CA) [> 4.0511 = 6.7519 < 8.7774] w=0.4116 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)N47.CB) [> 4.1220 = 6.8700 < 8.9310] w=0.4105 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)A125.CB) [> 4.1342 = 6.8904 < 8.9575] w=0.4068 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)A63.CB) [> 3.9357 = 6.5595 < 8.5273] w=0.4000 to align # Constraint # added constraint: constraint((T0316)T22.CB, (T0316)G127.CA) [> 3.1870 = 5.3117 < 6.9051] w=0.3997 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)T126.CB) [> 4.4099 = 7.3499 < 9.5548] w=0.3931 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)D55.CB) [> 3.2731 = 5.4552 < 7.0918] w=0.3902 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)F112.CB) [> 3.6449 = 6.0748 < 7.8973] w=0.3858 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)F112.CB) [> 3.9292 = 6.5486 < 8.5132] w=0.3846 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)Y115.CB) [> 3.7522 = 6.2536 < 8.1297] w=0.3846 to align # Constraint # added constraint: constraint((T0316)L26.CB, (T0316)A125.CB) [> 3.6810 = 6.1350 < 7.9754] w=0.3765 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)P69.CB) [> 4.2856 = 7.1427 < 9.2856] w=0.3759 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)M38.CB) [> 3.9162 = 6.5271 < 8.4852] w=0.3735 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)G127.CA) [> 3.2920 = 5.4868 < 7.1328] w=0.3702 to align # Constraint # added constraint: constraint((T0316)T22.CB, (T0316)T126.CB) [> 3.8125 = 6.3541 < 8.2604] w=0.3629 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)N74.CB) [> 4.1860 = 6.9767 < 9.0697] w=0.3574 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)Y115.CB) [> 3.5198 = 5.8664 < 7.6263] w=0.3552 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)K108.CB) [> 3.6413 = 6.0688 < 7.8895] w=0.3530 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)G127.CA) [> 4.3191 = 7.1985 < 9.3580] w=0.3526 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)V62.CB) [> 3.6549 = 6.0914 < 7.9189] w=0.3395 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)V179.CB) [> 3.2091 = 5.3485 < 6.9530] w=0.3322 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)D58.CB) [> 3.4138 = 5.6896 < 7.3965] w=0.3319 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)V59.CB) [> 4.0834 = 6.8056 < 8.8473] w=0.3273 to align # Constraint # added constraint: constraint((T0316)N47.CB, (T0316)F75.CB) [> 3.3865 = 5.6442 < 7.3375] w=0.3270 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)Y123.CB) [> 4.3971 = 7.3285 < 9.5270] w=0.3264 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)A183.CB) [> 3.3264 = 5.5440 < 7.2072] w=0.3246 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)G127.CA) [> 3.3078 = 5.5130 < 7.1669] w=0.3188 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)V179.CB) [> 3.7966 = 6.3277 < 8.2260] w=0.3169 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)H128.CB) [> 4.0554 = 6.7591 < 8.7868] w=0.3160 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)V59.CB) [> 4.1074 = 6.8457 < 8.8993] w=0.3141 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)F112.CB) [> 4.0530 = 6.7551 < 8.7816] w=0.3092 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)Y115.CB) [> 3.7021 = 6.1702 < 8.0213] w=0.3082 to align # Constraint # added constraint: constraint((T0316)N47.CB, (T0316)N74.CB) [> 3.8878 = 6.4796 < 8.4235] w=0.3038 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)L188.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.3018 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)A186.CB) [> 3.2408 = 5.4013 < 7.0217] w=0.3018 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)L182.CB) [> 3.4472 = 5.7453 < 7.4688] w=0.3018 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)A183.CB) [> 3.9675 = 6.6124 < 8.5962] w=0.3018 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)Y115.CB) [> 3.4606 = 5.7676 < 7.4979] w=0.3013 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)V62.CB) [> 4.1910 = 6.9850 < 9.0805] w=0.2941 to align # Constraint # added constraint: constraint((T0316)N47.CB, (T0316)E76.CB) [> 3.6808 = 6.1347 < 7.9751] w=0.2886 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)V59.CB) [> 3.4682 = 5.7803 < 7.5144] w=0.2862 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)R180.CB) [> 4.0130 = 6.6884 < 8.6949] w=0.2862 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)V179.CB) [> 3.5859 = 5.9765 < 7.7695] w=0.2860 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)A183.CB) [> 3.8747 = 6.4579 < 8.3953] w=0.2786 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)P170.CB) [> 3.5247 = 5.8745 < 7.6369] w=0.2786 to align # Constraint # added constraint: constraint((T0316)L113.CB, (T0316)Y123.CB) [> 3.3844 = 5.6406 < 7.3328] w=0.2761 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)S72.CB) [> 3.9587 = 6.5978 < 8.5771] w=0.2761 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)L188.CB) [> 4.2906 = 7.1511 < 9.2964] w=0.2708 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)L188.CB) [> 3.3587 = 5.5978 < 7.2772] w=0.2708 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)D122.CB) [> 3.1874 = 5.3123 < 6.9060] w=0.2658 to align # Constraint # added constraint: constraint((T0316)T22.CB, (T0316)P170.CB) [> 3.4225 = 5.7042 < 7.4154] w=0.2631 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)N74.CB) [> 3.6291 = 6.0485 < 7.8630] w=0.2615 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)Y71.CB) [> 3.9743 = 6.6239 < 8.6111] w=0.2586 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)V73.CB) [> 3.7263 = 6.2105 < 8.0737] w=0.2572 to align # Constraint # added constraint: constraint((T0316)H323.CB, (T0316)I332.CB) [> 3.8311 = 6.3852 < 8.3008] w=0.2561 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)Y70.CB) [> 4.3585 = 7.2641 < 9.4434] w=0.2556 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)A183.CB) [> 4.5721 = 7.6202 < 9.9062] w=0.2553 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)F37.CB) [> 4.2104 = 7.0174 < 9.1226] w=0.2511 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)Y70.CB) [> 3.8363 = 6.3938 < 8.3119] w=0.2510 to align # Constraint # added constraint: constraint((T0316)T22.CB, (T0316)L171.CB) [> 3.5148 = 5.8579 < 7.6153] w=0.2476 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)L171.CB) [> 3.4013 = 5.6689 < 7.3695] w=0.2476 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)L171.CB) [> 3.8686 = 6.4477 < 8.3820] w=0.2473 to align # Constraint # added constraint: constraint((T0316)K6.CB, (T0316)D32.CB) [> 3.9224 = 6.5374 < 8.4986] w=0.2470 to align # Constraint # added constraint: constraint((T0316)V347.CB, (T0316)G356.CA) [> 3.8064 = 6.3440 < 8.2472] w=0.2450 to align # Constraint # added constraint: constraint((T0316)T321.CB, (T0316)I332.CB) [> 3.0266 = 5.0443 < 6.5576] w=0.2449 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)G357.CA) [> 3.8612 = 6.4353 < 8.3659] w=0.2425 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)L171.CB) [> 3.3933 = 5.6554 < 7.3521] w=0.2398 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)D55.CB) [> 4.1437 = 6.9061 < 8.9779] w=0.2390 to align # Constraint # added constraint: constraint((T0316)V347.CB, (T0316)G357.CA) [> 3.5437 = 5.9062 < 7.6780] w=0.2373 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)F37.CB) [> 3.7426 = 6.2377 < 8.1090] w=0.2356 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)I107.CB) [> 3.3830 = 5.6383 < 7.3298] w=0.2354 to align # Constraint # added constraint: constraint((T0316)K6.CB, (T0316)Y31.CB) [> 4.0548 = 6.7580 < 8.7854] w=0.2327 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)M168.CB) [> 3.9632 = 6.6053 < 8.5869] w=0.2321 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)F169.CB) [> 3.7536 = 6.2561 < 8.1329] w=0.2321 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)F169.CB) [> 3.2784 = 5.4640 < 7.1032] w=0.2321 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)F75.CB) [> 3.7229 = 6.2048 < 8.0662] w=0.2307 to align # Constraint # added constraint: constraint((T0316)R180.CB, (T0316)T190.CB) [> 3.5125 = 5.8541 < 7.6103] w=0.2296 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)V62.CB) [> 4.1806 = 6.9676 < 9.0579] w=0.2278 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)Y123.CB) [> 3.8892 = 6.4819 < 8.4265] w=0.2255 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)F169.CB) [> 3.5617 = 5.9361 < 7.7169] w=0.2243 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)M168.CB) [> 3.4778 = 5.7963 < 7.5352] w=0.2243 to align # Constraint # added constraint: constraint((T0316)G48.CA, (T0316)N74.CB) [> 3.6200 = 6.0332 < 7.8432] w=0.2235 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)N74.CB) [> 3.8185 = 6.3642 < 8.2734] w=0.2229 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)V331.CB) [> 3.0038 = 5.0062 < 6.5081] w=0.2220 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)A334.CB) [> 3.8769 = 6.4616 < 8.4000] w=0.2220 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)F75.CB) [> 3.6473 = 6.0788 < 7.9024] w=0.2216 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)A63.CB) [> 3.4248 = 5.7080 < 7.4204] w=0.2200 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)L171.CB) [> 3.8700 = 6.4500 < 8.3851] w=0.2166 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)G30.CA) [> 4.0425 = 6.7375 < 8.7587] w=0.2156 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)F333.CB) [> 3.1697 = 5.2828 < 6.8676] w=0.2145 to align # Constraint # added constraint: constraint((T0316)A345.CB, (T0316)G357.CA) [> 4.1262 = 6.8770 < 8.9400] w=0.2144 to align # Constraint # added constraint: constraint((T0316)K319.CB, (T0316)A334.CB) [> 3.0054 = 5.0090 < 6.5117] w=0.2144 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)D55.CB) [> 3.8440 = 6.4066 < 8.3286] w=0.2096 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)F169.CB) [> 3.4454 = 5.7423 < 7.4650] w=0.2088 to align # Constraint # added constraint: constraint((T0316)L26.CB, (T0316)P170.CB) [> 4.2101 = 7.0168 < 9.1218] w=0.2088 to align # Constraint # added constraint: constraint((T0316)K6.CB, (T0316)D122.CB) [> 3.0090 = 5.0150 < 6.5195] w=0.2088 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)T126.CB) [> 3.5824 = 5.9707 < 7.7619] w=0.2079 to align # Constraint # added constraint: constraint((T0316)Q344.CB, (T0316)L359.CB) [> 4.1235 = 6.8725 < 8.9342] w=0.2067 to align # Constraint # added constraint: constraint((T0316)A345.CB, (T0316)G358.CA) [> 3.7224 = 6.2040 < 8.0652] w=0.2066 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)F75.CB) [> 3.9850 = 6.6417 < 8.6343] w=0.2032 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)A116.CB) [> 4.3969 = 7.3282 < 9.5266] w=0.2029 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)G172.CA) [> 3.4552 = 5.7586 < 7.4862] w=0.2011 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)S72.CB) [> 3.6800 = 6.1334 < 7.9735] w=0.2010 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)F75.CB) [> 4.0870 = 6.8117 < 8.8552] w=0.2002 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)G358.CA) [> 3.2464 = 5.4106 < 7.0338] w=0.1990 to align # Constraint # added constraint: constraint((T0316)S318.CB, (T0316)E335.CB) [> 3.0644 = 5.1073 < 6.6395] w=0.1990 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)A186.CB) [> 4.3726 = 7.2877 < 9.4740] w=0.1934 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)G172.CA) [> 3.3731 = 5.6219 < 7.3085] w=0.1934 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)L174.CB) [> 3.4041 = 5.6735 < 7.3755] w=0.1934 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)K176.CB) [> 4.2642 = 7.1070 < 9.2391] w=0.1931 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)D122.CB) [> 3.8416 = 6.4027 < 8.3235] w=0.1926 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)D58.CB) [> 3.9801 = 6.6335 < 8.6236] w=0.1923 to align # Constraint # added constraint: constraint((T0316)G343.CA, (T0316)L359.CB) [> 3.2715 = 5.4524 < 7.0881] w=0.1913 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)I332.CB) [> 3.7111 = 6.1852 < 8.0408] w=0.1913 to align # Constraint # added constraint: constraint((T0316)A345.CB, (T0316)L359.CB) [> 3.2892 = 5.4821 < 7.1267] w=0.1911 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)A121.CB) [> 4.0281 = 6.7136 < 8.7276] w=0.1907 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)G172.CA) [> 4.1034 = 6.8391 < 8.8908] w=0.1856 to align # Constraint # added constraint: constraint((T0316)F348.CB, (T0316)G357.CA) [> 3.5261 = 5.8768 < 7.6398] w=0.1854 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)L359.CB) [> 4.3530 = 7.2551 < 9.4316] w=0.1854 to align # Constraint # added constraint: constraint((T0316)K319.CB, (T0316)F333.CB) [> 4.3508 = 7.2514 < 9.4268] w=0.1836 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)G120.CA) [> 3.5401 = 5.9001 < 7.6701] w=0.1835 to align # Constraint # added constraint: constraint((T0316)Q344.CB, (T0316)I360.CB) [> 3.0457 = 5.0763 < 6.5991] w=0.1797 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)A121.CB) [> 4.4582 = 7.4304 < 9.6595] w=0.1796 to align # Constraint # added constraint: constraint((T0316)G343.CA, (T0316)I360.CB) [> 3.2008 = 5.3346 < 6.9350] w=0.1777 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)D55.CB) [> 3.5320 = 5.8867 < 7.6527] w=0.1772 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)A116.CB) [> 4.0035 = 6.6724 < 8.6742] w=0.1771 to align # Constraint # added constraint: constraint((T0316)V347.CB, (T0316)G358.CA) [> 4.5425 = 7.5709 < 9.8421] w=0.1758 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)G127.CA) [> 4.3980 = 7.3300 < 9.5291] w=0.1737 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)T190.CB) [> 3.6232 = 6.0387 < 7.8503] w=0.1704 to align # Constraint # added constraint: constraint((T0316)K319.CB, (T0316)E335.CB) [> 4.1988 = 6.9981 < 9.0975] w=0.1703 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)Y56.CB) [> 3.1136 = 5.1893 < 6.7461] w=0.1701 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)E175.CB) [> 3.7173 = 6.1955 < 8.0542] w=0.1700 to align # Constraint # added constraint: constraint((T0316)S318.CB, (T0316)F333.CB) [> 3.1049 = 5.1749 < 6.7273] w=0.1681 to align # Constraint # added constraint: constraint((T0316)I340.CB, (T0316)I360.CB) [> 3.7078 = 6.1796 < 8.0335] w=0.1673 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)E76.CB) [> 3.8644 = 6.4408 < 8.3730] w=0.1666 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)G35.CA) [> 4.0682 = 6.7803 < 8.8144] w=0.1666 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)T22.CB) [> 4.0633 = 6.7722 < 8.8038] w=0.1642 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)I360.CB) [> 4.0573 = 6.7622 < 8.7909] w=0.1641 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)T167.CB) [> 3.6512 = 6.0853 < 7.9109] w=0.1625 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)T167.CB) [> 3.5623 = 5.9371 < 7.7183] w=0.1624 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)K108.CB) [> 4.2806 = 7.1343 < 9.2745] w=0.1622 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)N74.CB) [> 3.6619 = 6.1031 < 7.9341] w=0.1614 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)T126.CB) [> 2.9448 = 4.9081 < 6.3805] w=0.1613 to align # Constraint # added constraint: constraint((T0316)G343.CA, (T0316)D361.CB) [> 4.3184 = 7.1974 < 9.3566] w=0.1567 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)V73.CB) [> 3.6911 = 6.1519 < 7.9974] w=0.1562 to align # Constraint # added constraint: constraint((T0316)T341.CB, (T0316)I360.CB) [> 4.0645 = 6.7741 < 8.8064] w=0.1555 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)A52.CB) [> 3.3192 = 5.5320 < 7.1915] w=0.1554 to align # Constraint # added constraint: constraint((T0316)F348.CB, (T0316)G358.CA) [> 4.3056 = 7.1761 < 9.3289] w=0.1548 to align # Constraint # added constraint: constraint((T0316)P342.CB, (T0316)D361.CB) [> 3.9792 = 6.6319 < 8.6215] w=0.1546 to align # Constraint # added constraint: constraint((T0316)P342.CB, (T0316)I360.CB) [> 3.4761 = 5.7934 < 7.5315] w=0.1546 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)G67.CA) [> 4.3902 = 7.3169 < 9.5120] w=0.1539 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)V347.CB) [> 4.3908 = 7.3180 < 9.5134] w=0.1507 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)G35.CA) [> 4.3661 = 7.2768 < 9.4599] w=0.1475 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)P170.CB) [> 4.1602 = 6.9337 < 9.0138] w=0.1472 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)L174.CB) [> 3.9896 = 6.6493 < 8.6440] w=0.1470 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)T167.CB) [> 4.3195 = 7.1991 < 9.3589] w=0.1467 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)G127.CA) [> 4.4686 = 7.4476 < 9.6819] w=0.1464 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)A63.CB) [> 4.2491 = 7.0818 < 9.2063] w=0.1458 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)V73.CB) [> 3.8273 = 6.3789 < 8.2925] w=0.1432 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)A52.CB) [> 3.8375 = 6.3958 < 8.3145] w=0.1432 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)S72.CB) [> 3.4043 = 5.6738 < 7.3759] w=0.1410 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)V346.CB) [> 3.3080 = 5.5134 < 7.1674] w=0.1409 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)N74.CB) [> 3.6098 = 6.0163 < 7.8212] w=0.1408 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)V83.CB) [> 3.4674 = 5.7790 < 7.5127] w=0.1400 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)M168.CB) [> 3.6023 = 6.0039 < 7.8050] w=0.1394 to align # Constraint # added constraint: constraint((T0316)Y79.CB, (T0316)I107.CB) [> 3.6542 = 6.0902 < 7.9173] w=0.1392 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)K176.CB) [> 4.1679 = 6.9465 < 9.0305] w=0.1384 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)T126.CB) [> 4.4356 = 7.3927 < 9.6105] w=0.1375 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)F109.CB) [> 4.2990 = 7.1651 < 9.3146] w=0.1350 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)V73.CB) [> 3.9977 = 6.6628 < 8.6617] w=0.1333 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)I36.CB) [> 4.1245 = 6.8742 < 8.9365] w=0.1323 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)K319.CB) [> 3.5974 = 5.9956 < 7.7943] w=0.1319 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)Y70.CB) [> 3.2793 = 5.4655 < 7.1052] w=0.1317 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)Y129.CB) [> 3.9008 = 6.5014 < 8.4518] w=0.1317 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)L182.CB) [> 4.5550 = 7.5917 < 9.8692] w=0.1317 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)P170.CB) [> 3.9163 = 6.5271 < 8.4853] w=0.1317 to align # Constraint # added constraint: constraint((T0316)L26.CB, (T0316)V124.CB) [> 3.6634 = 6.1057 < 7.9374] w=0.1314 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)I107.CB) [> 4.0540 = 6.7567 < 8.7837] w=0.1314 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)Y123.CB) [> 4.6404 = 7.7339 < 10.0541] w=0.1309 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)V320.CB) [> 2.9895 = 4.9825 < 6.4773] w=0.1308 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)I66.CB) [> 4.1427 = 6.9045 < 8.9759] w=0.1306 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)E76.CB) [> 4.0299 = 6.7165 < 8.7315] w=0.1305 to align # Constraint # added constraint: constraint((T0316)S318.CB, (T0316)Q337.CB) [> 3.6774 = 6.1291 < 7.9678] w=0.1302 to align # Constraint # added constraint: constraint((T0316)F87.CB, (T0316)E106.CB) [> 3.4855 = 5.8091 < 7.5519] w=0.1298 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)V320.CB) [> 4.3909 = 7.3182 < 9.5137] w=0.1295 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)Y349.CB) [> 3.1356 = 5.2260 < 6.7938] w=0.1286 to align # Constraint # added constraint: constraint((T0316)E90.CB, (T0316)E106.CB) [> 3.8938 = 6.4896 < 8.4365] w=0.1268 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)G35.CA) [> 3.1904 = 5.3173 < 6.9124] w=0.1247 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)F37.CB) [> 4.3821 = 7.3034 < 9.4945] w=0.1243 to align # Constraint # added constraint: constraint((T0316)V33.CB, (T0316)A125.CB) [> 4.6195 = 7.6991 < 10.0089] w=0.1239 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)L171.CB) [> 3.0522 = 5.0871 < 6.6132] w=0.1239 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)T190.CB) [> 3.5670 = 5.9451 < 7.7286] w=0.1239 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)V322.CB) [> 3.5543 = 5.9239 < 7.7010] w=0.1239 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)Y123.CB) [> 4.1618 = 6.9364 < 9.0173] w=0.1236 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)H173.CB) [> 3.5206 = 5.8677 < 7.6280] w=0.1236 to align # Constraint # added constraint: constraint((T0316)Y91.CB, (T0316)I107.CB) [> 3.7187 = 6.1978 < 8.0572] w=0.1233 to align # Constraint # added constraint: constraint((T0316)D18.CB, (T0316)R131.CB) [> 4.4012 = 7.3354 < 9.5360] w=0.1233 to align # Constraint # added constraint: constraint((T0316)N74.CB, (T0316)A111.CB) [> 3.8581 = 6.4301 < 8.3591] w=0.1231 to align # Constraint # added constraint: constraint((T0316)D42.CB, (T0316)E76.CB) [> 3.6309 = 6.0515 < 7.8669] w=0.1226 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)T126.CB) [> 4.3565 = 7.2607 < 9.4390] w=0.1216 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)F348.CB) [> 3.5601 = 5.9335 < 7.7136] w=0.1210 to align # Constraint # added constraint: constraint((T0316)T96.CB, (T0316)I107.CB) [> 3.4202 = 5.7004 < 7.4105] w=0.1203 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)K39.CB) [> 3.9825 = 6.6374 < 8.6287] w=0.1184 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)P170.CB) [> 3.9415 = 6.5691 < 8.5398] w=0.1159 to align # Constraint # added constraint: constraint((T0316)D122.CB, (T0316)M168.CB) [> 3.6532 = 6.0886 < 7.9152] w=0.1159 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)V179.CB) [> 3.7302 = 6.2170 < 8.0821] w=0.1158 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)V331.CB) [> 4.1094 = 6.8489 < 8.9036] w=0.1153 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)F333.CB) [> 4.1089 = 6.8481 < 8.9025] w=0.1153 to align # Constraint # added constraint: constraint((T0316)R312.CB, (T0316)V346.CB) [> 3.6720 = 6.1200 < 7.9560] w=0.1153 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)Q344.CB) [> 3.7338 = 6.2231 < 8.0900] w=0.1153 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)V346.CB) [> 2.9207 = 4.8679 < 6.3282] w=0.1153 to align # Constraint # added constraint: constraint((T0316)D42.CB, (T0316)N74.CB) [> 4.0457 = 6.7429 < 8.7658] w=0.1152 to align # Constraint # added constraint: constraint((T0316)F87.CB, (T0316)I107.CB) [> 3.4401 = 5.7336 < 7.4536] w=0.1144 to align # Constraint # added constraint: constraint((T0316)W80.CB, (T0316)A111.CB) [> 3.5949 = 5.9915 < 7.7890] w=0.1143 to align # Constraint # added constraint: constraint((T0316)K328.CB, (T0316)D361.CB) [> 4.1564 = 6.9274 < 9.0056] w=0.1141 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)G127.CA) [> 3.1641 = 5.2735 < 6.8556] w=0.1141 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)M38.CB) [> 4.1802 = 6.9669 < 9.0570] w=0.1126 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)F84.CB) [> 3.7714 = 6.2857 < 8.1714] w=0.1121 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)Q65.CB) [> 4.3919 = 7.3199 < 9.5158] w=0.1120 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)K319.CB) [> 4.2844 = 7.1407 < 9.2829] w=0.1114 to align # Constraint # added constraint: constraint((T0316)K166.CB, (T0316)E178.CB) [> 3.5851 = 5.9751 < 7.7677] w=0.1108 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)A116.CB) [> 4.4110 = 7.3517 < 9.5573] w=0.1098 to align # Constraint # added constraint: constraint((T0316)R312.CB, (T0316)Y349.CB) [> 3.8595 = 6.4326 < 8.3623] w=0.1096 to align # Constraint # added constraint: constraint((T0316)R312.CB, (T0316)V347.CB) [> 2.8408 = 4.7347 < 6.1551] w=0.1096 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)F348.CB) [> 4.1325 = 6.8875 < 8.9537] w=0.1086 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)D350.CB) [> 4.2248 = 7.0413 < 9.1537] w=0.1086 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)L171.CB) [> 4.3840 = 7.3067 < 9.4987] w=0.1084 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)G172.CA) [> 3.3842 = 5.6403 < 7.3323] w=0.1084 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)M168.CB) [> 4.2072 = 7.0120 < 9.1156] w=0.1084 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)T167.CB) [> 4.0191 = 6.6985 < 8.7081] w=0.1083 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)T153.CB) [> 4.4650 = 7.4417 < 9.6742] w=0.1082 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)T126.CB) [> 4.6590 = 7.7649 < 10.0944] w=0.1082 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)F169.CB) [> 4.1907 = 6.9844 < 9.0798] w=0.1082 to align # Constraint # added constraint: constraint((T0316)R312.CB, (T0316)F348.CB) [> 4.6429 = 7.7381 < 10.0596] w=0.1081 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)F75.CB) [> 3.5814 = 5.9691 < 7.7598] w=0.1080 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)A116.CB) [> 4.0026 = 6.6710 < 8.6723] w=0.1080 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)F87.CB) [> 3.9579 = 6.5965 < 8.5754] w=0.1078 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)V179.CB) [> 4.3942 = 7.3238 < 9.5209] w=0.1078 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)F348.CB) [> 3.4796 = 5.7993 < 7.5392] w=0.1077 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)K108.CB) [> 3.6347 = 6.0578 < 7.8752] w=0.1074 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)N104.CB) [> 3.9029 = 6.5048 < 8.4562] w=0.1073 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)V146.CB) [> 4.1796 = 6.9659 < 9.0557] w=0.1064 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)F75.CB) [> 4.2057 = 7.0095 < 9.1123] w=0.1063 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)K39.CB) [> 3.5017 = 5.8362 < 7.5871] w=0.1047 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)G35.CA) [> 3.5162 = 5.8603 < 7.6184] w=0.1028 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)E76.CB) [> 3.7278 = 6.2131 < 8.0770] w=0.1028 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)S72.CB) [> 4.5300 = 7.5500 < 9.8150] w=0.1027 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)S72.CB) [> 3.9054 = 6.5089 < 8.4616] w=0.1016 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)Y115.CB) [> 3.8078 = 6.3463 < 8.2502] w=0.1006 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)L171.CB) [> 3.5398 = 5.8997 < 7.6696] w=0.1004 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)Q29.CB) [> 4.3330 = 7.2217 < 9.3882] w=0.1004 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)R180.CB) [> 3.4584 = 5.7640 < 7.4932] w=0.0998 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)A125.CB) [> 3.5496 = 5.9160 < 7.6908] w=0.0990 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)Y86.CB) [> 3.8431 = 6.4051 < 8.3267] w=0.0989 to align # Constraint # added constraint: constraint((T0316)F84.CB, (T0316)Y115.CB) [> 3.2950 = 5.4917 < 7.1393] w=0.0988 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)V322.CB) [> 3.3567 = 5.5945 < 7.2728] w=0.0987 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)V83.CB) [> 3.5537 = 5.9229 < 7.6997] w=0.0986 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)D122.CB) [> 3.9850 = 6.6416 < 8.6341] w=0.0980 to align # Constraint # added constraint: constraint((T0316)F303.CB, (T0316)V322.CB) [> 3.3090 = 5.5149 < 7.1694] w=0.0968 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)V320.CB) [> 3.7025 = 6.1709 < 8.0221] w=0.0959 to align # Constraint # added constraint: constraint((T0316)S19.CB, (T0316)H128.CB) [> 3.0388 = 5.0646 < 6.5840] w=0.0953 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)F109.CB) [> 3.8816 = 6.4693 < 8.4101] w=0.0944 to align # Constraint # added constraint: constraint((T0316)P342.CB, (T0316)N362.CB) [> 3.9774 = 6.6290 < 8.6177] w=0.0934 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)Y273.CB) [> 3.9999 = 6.6665 < 8.6664] w=0.0931 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)L182.CB) [> 4.5882 = 7.6469 < 9.9410] w=0.0929 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)H173.CB) [> 3.6580 = 6.0966 < 7.9256] w=0.0929 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)A191.CB) [> 3.5777 = 5.9628 < 7.7516] w=0.0929 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)Y154.CB) [> 3.1212 = 5.2019 < 6.7625] w=0.0928 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)T153.CB) [> 2.9044 = 4.8407 < 6.2929] w=0.0928 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)Y129.CB) [> 3.0045 = 5.0075 < 6.5097] w=0.0927 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)G356.CA) [> 3.6931 = 6.1552 < 8.0018] w=0.0923 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)I340.CB) [> 4.3607 = 7.2678 < 9.4482] w=0.0923 to align # Constraint # added constraint: constraint((T0316)L113.CB, (T0316)L182.CB) [> 3.0317 = 5.0529 < 6.5687] w=0.0914 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)V179.CB) [> 3.6516 = 6.0861 < 7.9119] w=0.0912 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)Y115.CB) [> 4.4728 = 7.4546 < 9.6910] w=0.0907 to align # Constraint # added constraint: constraint((T0316)R314.CB, (T0316)Q344.CB) [> 4.6014 = 7.6691 < 9.9698] w=0.0896 to align # Constraint # added constraint: constraint((T0316)I340.CB, (T0316)A363.CB) [> 3.7225 = 6.2042 < 8.0655] w=0.0895 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)K319.CB) [> 3.7081 = 6.1801 < 8.0341] w=0.0889 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)V320.CB) [> 4.0419 = 6.7366 < 8.7575] w=0.0889 to align # Constraint # added constraint: constraint((T0316)P342.CB, (T0316)A363.CB) [> 3.8205 = 6.3675 < 8.2778] w=0.0888 to align # Constraint # added constraint: constraint((T0316)P316.CB, (T0316)R338.CB) [> 3.9660 = 6.6100 < 8.5929] w=0.0882 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)D55.CB) [> 3.6903 = 6.1506 < 7.9957] w=0.0881 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)Q337.CB) [> 3.5709 = 5.9515 < 7.7369] w=0.0867 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)A345.CB) [> 4.5185 = 7.5309 < 9.7902] w=0.0862 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)G30.CA) [> 4.1757 = 6.9595 < 9.0474] w=0.0859 to align # Constraint # added constraint: constraint((T0316)Y154.CB, (T0316)M168.CB) [> 4.0410 = 6.7350 < 8.7555] w=0.0859 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)P316.CB) [> 4.6844 = 7.8073 < 10.1495] w=0.0853 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)L188.CB) [> 4.3875 = 7.3125 < 9.5062] w=0.0852 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)M168.CB) [> 4.1845 = 6.9742 < 9.0664] w=0.0852 to align # Constraint # added constraint: constraint((T0316)E78.CB, (T0316)A111.CB) [> 4.2350 = 7.0584 < 9.1759] w=0.0852 to align # Constraint # added constraint: constraint((T0316)R82.CB, (T0316)I107.CB) [> 4.2761 = 7.1268 < 9.2648] w=0.0851 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)Y154.CB) [> 3.8263 = 6.3771 < 8.2902] w=0.0850 to align # Constraint # added constraint: constraint((T0316)Y154.CB, (T0316)F169.CB) [> 3.4892 = 5.8153 < 7.5599] w=0.0850 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)A191.CB) [> 3.4179 = 5.6965 < 7.4055] w=0.0850 to align # Constraint # added constraint: constraint((T0316)K105.CB, (T0316)D147.CB) [> 3.0799 = 5.1332 < 6.6731] w=0.0850 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)G145.CA) [> 2.6297 = 4.3827 < 5.6976] w=0.0849 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)A63.CB) [> 4.1489 = 6.9148 < 8.9893] w=0.0848 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)T118.CB) [> 3.8247 = 6.3746 < 8.2870] w=0.0843 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)C103.CB) [> 3.6095 = 6.0157 < 7.8205] w=0.0843 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)V322.CB) [> 4.0865 = 6.8109 < 8.8541] w=0.0836 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)V83.CB) [> 4.4128 = 7.3546 < 9.5610] w=0.0834 to align # Constraint # added constraint: constraint((T0316)T341.CB, (T0316)A363.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.0814 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)Y349.CB) [> 3.9677 = 6.6128 < 8.5966] w=0.0804 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)A339.CB) [> 3.0223 = 5.0371 < 6.5483] w=0.0802 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)A339.CB) [> 4.3472 = 7.2453 < 9.4189] w=0.0801 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)V73.CB) [> 3.4480 = 5.7467 < 7.4707] w=0.0789 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)V322.CB) [> 3.9295 = 6.5491 < 8.5138] w=0.0786 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)T321.CB) [> 3.7303 = 6.2172 < 8.0824] w=0.0786 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)A345.CB) [> 4.2569 = 7.0949 < 9.2234] w=0.0779 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)T190.CB) [> 3.3639 = 5.6066 < 7.2885] w=0.0775 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)L171.CB) [> 4.0027 = 6.6712 < 8.6725] w=0.0775 to align # Constraint # added constraint: constraint((T0316)I66.CB, (T0316)L188.CB) [> 3.9438 = 6.5731 < 8.5450] w=0.0775 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)V347.CB) [> 3.4278 = 5.7130 < 7.4269] w=0.0774 to align # Constraint # added constraint: constraint((T0316)L88.CB, (T0316)P97.CB) [> 4.1818 = 6.9697 < 9.0606] w=0.0774 to align # Constraint # added constraint: constraint((T0316)D43.CB, (T0316)E76.CB) [> 3.0555 = 5.0925 < 6.6203] w=0.0773 to align # Constraint # added constraint: constraint((T0316)D122.CB, (T0316)T167.CB) [> 2.5276 = 4.2126 < 5.4764] w=0.0773 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)R144.CB) [> 4.0026 = 6.6711 < 8.6724] w=0.0772 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)Y70.CB) [> 2.7805 = 4.6342 < 6.0245] w=0.0769 to align # Constraint # added constraint: constraint((T0316)V83.CB, (T0316)I107.CB) [> 3.6618 = 6.1030 < 7.9339] w=0.0769 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)Y115.CB) [> 4.1593 = 6.9322 < 9.0119] w=0.0768 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)V322.CB) [> 4.3748 = 7.2913 < 9.4786] w=0.0767 to align # Constraint # added constraint: constraint((T0316)E330.CB, (T0316)Y364.CB) [> 4.3837 = 7.3062 < 9.4981] w=0.0767 to align # Constraint # added constraint: constraint((T0316)V179.CB, (T0316)T190.CB) [> 3.1921 = 5.3202 < 6.9163] w=0.0767 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)E184.CB) [> 3.8621 = 6.4369 < 8.3679] w=0.0765 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)H128.CB) [> 3.3082 = 5.5137 < 7.1678] w=0.0755 to align # Constraint # added constraint: constraint((T0316)V132.CB, (T0316)M142.CB) [> 3.5614 = 5.9356 < 7.7163] w=0.0750 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)D317.CB) [> 3.7850 = 6.3083 < 8.2008] w=0.0741 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)Q315.CB) [> 3.2278 = 5.3797 < 6.9935] w=0.0741 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)G357.CA) [> 3.7850 = 6.3083 < 8.2008] w=0.0736 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)Y349.CB) [> 4.6653 = 7.7755 < 10.1081] w=0.0730 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)F348.CB) [> 4.5156 = 7.5259 < 9.7837] w=0.0729 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)T321.CB) [> 4.4940 = 7.4900 < 9.7370] w=0.0716 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)H323.CB) [> 3.1627 = 5.2711 < 6.8525] w=0.0709 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)V49.CB) [> 3.6193 = 6.0321 < 7.8418] w=0.0706 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)G250.CA) [> 4.3130 = 7.1884 < 9.3449] w=0.0706 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)Y129.CB) [> 3.5757 = 5.9595 < 7.7474] w=0.0699 to align # Constraint # added constraint: constraint((T0316)Y79.CB, (T0316)C103.CB) [> 3.7841 = 6.3068 < 8.1989] w=0.0697 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)T190.CB) [> 3.8088 = 6.3481 < 8.2525] w=0.0697 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)K166.CB) [> 2.6702 = 4.4503 < 5.7854] w=0.0697 to align # Constraint # added constraint: constraint((T0316)D55.CB, (T0316)A191.CB) [> 3.7367 = 6.2279 < 8.0963] w=0.0697 to align # Constraint # added constraint: constraint((T0316)L26.CB, (T0316)M168.CB) [> 4.4279 = 7.3799 < 9.5938] w=0.0696 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)K193.CB) [> 3.6664 = 6.1107 < 7.9439] w=0.0696 to align # Constraint # added constraint: constraint((T0316)Y154.CB, (T0316)T167.CB) [> 3.3368 = 5.5614 < 7.2298] w=0.0696 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)G172.CA) [> 4.2010 = 7.0017 < 9.1022] w=0.0696 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)Y154.CB) [> 4.6859 = 7.8097 < 10.1527] w=0.0695 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)T153.CB) [> 4.3458 = 7.2431 < 9.4160] w=0.0695 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)Q152.CB) [> 4.3177 = 7.1961 < 9.3550] w=0.0695 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)D55.CB) [> 4.1755 = 6.9592 < 9.0470] w=0.0694 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)Y79.CB) [> 3.4631 = 5.7718 < 7.5033] w=0.0694 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)T139.CB) [> 3.4218 = 5.7030 < 7.4138] w=0.0693 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)A130.CB) [> 4.5015 = 7.5024 < 9.7531] w=0.0692 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)Y115.CB) [> 3.6523 = 6.0872 < 7.9133] w=0.0692 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)T321.CB) [> 4.1046 = 6.8409 < 8.8932] w=0.0690 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)L188.CB) [> 3.6099 = 6.0164 < 7.8214] w=0.0687 to align # Constraint # added constraint: constraint((T0316)Y91.CB, (T0316)N104.CB) [> 3.4491 = 5.7485 < 7.4731] w=0.0684 to align # Constraint # added constraint: constraint((T0316)W80.CB, (T0316)I107.CB) [> 3.6394 = 6.0656 < 7.8853] w=0.0684 to align # Constraint # added constraint: constraint((T0316)F84.CB, (T0316)L119.CB) [> 2.8856 = 4.8094 < 6.2522] w=0.0682 to align # Constraint # added constraint: constraint((T0316)G250.CA, (T0316)W260.CB) [> 4.1326 = 6.8877 < 8.9540] w=0.0679 to align # Constraint # added constraint: constraint((T0316)V346.CB, (T0316)L355.CB) [> 4.4613 = 7.4355 < 9.6662] w=0.0677 to align # Constraint # added constraint: constraint((T0316)M230.CB, (T0316)Y239.CB) [> 3.9243 = 6.5405 < 8.5027] w=0.0668 to align # Constraint # added constraint: constraint((T0316)G251.CA, (T0316)F261.CB) [> 3.4470 = 5.7450 < 7.4685] w=0.0665 to align # Constraint # added constraint: constraint((T0316)T304.CB, (T0316)V324.CB) [> 4.0826 = 6.8043 < 8.8456] w=0.0664 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)E76.CB) [> 4.0160 = 6.6933 < 8.7014] w=0.0663 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)Y273.CB) [> 3.5546 = 5.9244 < 7.7017] w=0.0658 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)R95.CB) [> 3.5980 = 5.9967 < 7.7957] w=0.0653 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)A183.CB) [> 4.3196 = 7.1993 < 9.3591] w=0.0651 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)F261.CB) [> 4.0530 = 6.7550 < 8.7815] w=0.0647 to align # Constraint # added constraint: constraint((T0316)R228.CB, (T0316)Y239.CB) [> 3.7904 = 6.3174 < 8.2126] w=0.0646 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)A52.CB) [> 3.4821 = 5.8034 < 7.5445] w=0.0646 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)F261.CB) [> 3.7401 = 6.2336 < 8.1037] w=0.0645 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)K39.CB) [> 3.7373 = 6.2288 < 8.0974] w=0.0644 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)A52.CB) [> 4.2699 = 7.1164 < 9.2514] w=0.0643 to align # Constraint # added constraint: constraint((T0316)L188.CB, (T0316)I202.CB) [> 4.1068 = 6.8447 < 8.8981] w=0.0640 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)V73.CB) [> 4.3595 = 7.2658 < 9.4456] w=0.0635 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)A191.CB) [> 3.3795 = 5.6325 < 7.3223] w=0.0620 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)Y154.CB) [> 2.4398 = 4.0663 < 5.2861] w=0.0619 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)V262.CB) [> 3.7891 = 6.3151 < 8.2097] w=0.0618 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)N148.CB) [> 3.0536 = 5.0893 < 6.6161] w=0.0618 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)Y56.CB) [> 4.6379 = 7.7298 < 10.0487] w=0.0618 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)V124.CB) [> 4.3655 = 7.2758 < 9.4585] w=0.0618 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)M38.CB) [> 3.7972 = 6.3287 < 8.2273] w=0.0616 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)M38.CB) [> 4.0703 = 6.7838 < 8.8190] w=0.0616 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)I36.CB) [> 3.7644 = 6.2740 < 8.1562] w=0.0616 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)I36.CB) [> 4.2769 = 7.1282 < 9.2667] w=0.0616 to align # Constraint # added constraint: constraint((T0316)Y86.CB, (T0316)K110.CB) [> 3.2028 = 5.3379 < 6.9393] w=0.0616 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)A130.CB) [> 4.5222 = 7.5371 < 9.7982] w=0.0615 to align # Constraint # added constraint: constraint((T0316)L26.CB, (T0316)G35.CA) [> 3.8674 = 6.4457 < 8.3793] w=0.0615 to align # Constraint # added constraint: constraint((T0316)S157.CB, (T0316)T167.CB) [> 4.2469 = 7.0782 < 9.2016] w=0.0614 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)V324.CB) [> 3.1511 = 5.2518 < 6.8274] w=0.0612 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)S189.CB) [> 2.7287 = 4.5478 < 5.9121] w=0.0612 to align # Constraint # added constraint: constraint((T0316)A133.CB, (T0316)L164.CB) [> 3.6272 = 6.0453 < 7.8589] w=0.0611 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)R95.CB) [> 3.2167 = 5.3611 < 6.9694] w=0.0610 to align # Constraint # added constraint: constraint((T0316)V132.CB, (T0316)L164.CB) [> 3.5768 = 5.9614 < 7.7498] w=0.0610 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)T51.CB) [> 4.2304 = 7.0507 < 9.1659] w=0.0610 to align # Constraint # added constraint: constraint((T0316)Y91.CB, (T0316)C103.CB) [> 3.7504 = 6.2507 < 8.1259] w=0.0609 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)N104.CB) [> 3.8686 = 6.4477 < 8.3820] w=0.0607 to align # Constraint # added constraint: constraint((T0316)L188.CB, (T0316)G203.CA) [> 3.2490 = 5.4149 < 7.0394] w=0.0606 to align # Constraint # added constraint: constraint((T0316)D100.CB, (T0316)A121.CB) [> 3.9548 = 6.5913 < 8.5687] w=0.0606 to align # Constraint # added constraint: constraint((T0316)F84.CB, (T0316)A121.CB) [> 4.2507 = 7.0845 < 9.2099] w=0.0605 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)V83.CB) [> 4.0431 = 6.7385 < 8.7601] w=0.0605 to align # Constraint # added constraint: constraint((T0316)R131.CB, (T0316)G145.CA) [> 3.5242 = 5.8736 < 7.6357] w=0.0601 to align # Constraint # added constraint: constraint((T0316)M299.CB, (T0316)L355.CB) [> 3.8903 = 6.4838 < 8.4290] w=0.0600 to align # Constraint # added constraint: constraint((T0316)V225.CB, (T0316)L236.CB) [> 3.4446 = 5.7410 < 7.4633] w=0.0600 to align # Constraint # added constraint: constraint((T0316)N98.CB, (T0316)I107.CB) [> 3.8396 = 6.3993 < 8.3191] w=0.0600 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)M222.CB) [> 3.9006 = 6.5009 < 8.4512] w=0.0599 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)R314.CB) [> 4.2882 = 7.1469 < 9.2910] w=0.0598 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)S318.CB) [> 4.2652 = 7.1087 < 9.2414] w=0.0598 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)Q337.CB) [> 3.2608 = 5.4347 < 7.0651] w=0.0597 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)V263.CB) [> 3.6622 = 6.1036 < 7.9347] w=0.0594 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)F261.CB) [> 3.5088 = 5.8480 < 7.6024] w=0.0593 to align # Constraint # added constraint: constraint((T0316)A133.CB, (T0316)L143.CB) [> 4.1011 = 6.8352 < 8.8858] w=0.0593 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)L272.CB) [> 3.7557 = 6.2596 < 8.1375] w=0.0593 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)D42.CB) [> 4.1474 = 6.9123 < 8.9860] w=0.0591 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)W260.CB) [> 4.1025 = 6.8375 < 8.8888] w=0.0590 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)G264.CA) [> 3.5138 = 5.8564 < 7.6133] w=0.0584 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)T96.CB) [> 3.4850 = 5.8084 < 7.5509] w=0.0584 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)Y273.CB) [> 3.9815 = 6.6359 < 8.6266] w=0.0583 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)Y273.CB) [> 3.2773 = 5.4621 < 7.1008] w=0.0579 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)K39.CB) [> 3.4624 = 5.7707 < 7.5019] w=0.0579 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)Q337.CB) [> 4.3066 = 7.1777 < 9.3310] w=0.0579 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)V263.CB) [> 3.6981 = 6.1635 < 8.0125] w=0.0578 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)Q337.CB) [> 4.2194 = 7.0323 < 9.1420] w=0.0577 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)S318.CB) [> 4.5093 = 7.5155 < 9.7702] w=0.0577 to align # Constraint # added constraint: constraint((T0316)A191.CB, (T0316)C200.CB) [> 3.4854 = 5.8090 < 7.5517] w=0.0570 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)G358.CA) [> 4.3088 = 7.1814 < 9.3358] w=0.0565 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)V346.CB) [> 4.1228 = 6.8714 < 8.9328] w=0.0565 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)A345.CB) [> 2.9348 = 4.8914 < 6.3588] w=0.0565 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)C354.CB) [> 4.1681 = 6.9469 < 9.0310] w=0.0565 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)V347.CB) [> 3.7369 = 6.2282 < 8.0967] w=0.0565 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)G357.CA) [> 4.5791 = 7.6318 < 9.9213] w=0.0565 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)C354.CB) [> 3.6226 = 6.0376 < 7.8489] w=0.0565 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)V263.CB) [> 4.0204 = 6.7006 < 8.7108] w=0.0565 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)A125.CB) [> 4.5971 = 7.6619 < 9.9605] w=0.0561 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)P99.CB) [> 3.2019 = 5.3365 < 6.9375] w=0.0560 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)G357.CA) [> 4.1844 = 6.9740 < 9.0661] w=0.0556 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)G356.CA) [> 3.2955 = 5.4925 < 7.1402] w=0.0556 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)G356.CA) [> 3.2420 = 5.4033 < 7.0243] w=0.0556 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)E330.CB) [> 3.6990 = 6.1650 < 8.0145] w=0.0550 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)L355.CB) [> 3.7876 = 6.3127 < 8.2065] w=0.0548 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)D350.CB) [> 2.8902 = 4.8169 < 6.2620] w=0.0548 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)R144.CB) [> 3.5325 = 5.8875 < 7.6538] w=0.0547 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)V331.CB) [> 3.7366 = 6.2277 < 8.0960] w=0.0547 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)V347.CB) [> 4.4985 = 7.4976 < 9.7469] w=0.0545 to align # Constraint # added constraint: constraint((T0316)V83.CB, (T0316)M102.CB) [> 3.1333 = 5.2222 < 6.7889] w=0.0542 to align # Constraint # added constraint: constraint((T0316)G16.CA, (T0316)K192.CB) [> 3.8093 = 6.3488 < 8.2534] w=0.0542 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)Y154.CB) [> 4.0437 = 6.7394 < 8.7612] w=0.0542 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)Y154.CB) [> 4.2765 = 7.1274 < 9.2657] w=0.0542 to align # Constraint # added constraint: constraint((T0316)L25.CB, (T0316)A125.CB) [> 4.3060 = 7.1767 < 9.3298] w=0.0541 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)V140.CB) [> 3.6365 = 6.0608 < 7.8790] w=0.0541 to align # Constraint # added constraint: constraint((T0316)D55.CB, (T0316)K193.CB) [> 3.7494 = 6.2490 < 8.1237] w=0.0541 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)P259.CB) [> 3.6453 = 6.0756 < 7.8983] w=0.0541 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)P259.CB) [> 3.8535 = 6.4225 < 8.3493] w=0.0541 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)F155.CB) [> 3.8527 = 6.4212 < 8.3476] w=0.0541 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)H141.CB) [> 3.9211 = 6.5352 < 8.4957] w=0.0540 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)N148.CB) [> 4.5384 = 7.5640 < 9.8332] w=0.0540 to align # Constraint # added constraint: constraint((T0316)A345.CB, (T0316)G356.CA) [> 3.9746 = 6.6244 < 8.6117] w=0.0539 to align # Constraint # added constraint: constraint((T0316)S5.CB, (T0316)Q29.CB) [> 4.4012 = 7.3354 < 9.5360] w=0.0537 to align # Constraint # added constraint: constraint((T0316)T286.CB, (T0316)F333.CB) [> 3.3467 = 5.5778 < 7.2512] w=0.0535 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)C50.CB) [> 4.1278 = 6.8796 < 8.9435] w=0.0533 to align # Constraint # added constraint: constraint((T0316)F84.CB, (T0316)I107.CB) [> 3.6183 = 6.0304 < 7.8396] w=0.0533 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)G264.CA) [> 3.6588 = 6.0980 < 7.9274] w=0.0531 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)S20.CB) [> 4.6952 = 7.8253 < 10.1728] w=0.0530 to align # Constraint # added constraint: constraint((T0316)M222.CB, (T0316)Y239.CB) [> 3.7164 = 6.1939 < 8.0521] w=0.0529 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)V33.CB) [> 4.5526 = 7.5877 < 9.8640] w=0.0529 to align # Constraint # added constraint: constraint((T0316)I117.CB, (T0316)L188.CB) [> 3.8415 = 6.4024 < 8.3232] w=0.0527 to align # Constraint # added constraint: constraint((T0316)V225.CB, (T0316)M237.CB) [> 3.8194 = 6.3657 < 8.2755] w=0.0524 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)G275.CA) [> 3.9377 = 6.5628 < 8.5316] w=0.0523 to align # Constraint # added constraint: constraint((T0316)G250.CA, (T0316)F261.CB) [> 3.4390 = 5.7317 < 7.4512] w=0.0522 to align # Constraint # added constraint: constraint((T0316)G251.CA, (T0316)V262.CB) [> 4.1268 = 6.8780 < 8.9414] w=0.0521 to align # Constraint # added constraint: constraint((T0316)M230.CB, (T0316)T240.CB) [> 3.4539 = 5.7565 < 7.4835] w=0.0519 to align # Constraint # added constraint: constraint((T0316)C103.CB, (T0316)F112.CB) [> 3.5345 = 5.8909 < 7.6582] w=0.0519 to align # Constraint # added constraint: constraint((T0316)L143.CB, (T0316)I202.CB) [> 4.1698 = 6.9497 < 9.0347] w=0.0518 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)V262.CB) [> 4.0135 = 6.6892 < 8.6960] w=0.0517 to align # Constraint # added constraint: constraint((T0316)V132.CB, (T0316)L143.CB) [> 4.0914 = 6.8190 < 8.8647] w=0.0517 to align # Constraint # added constraint: constraint((T0316)V83.CB, (T0316)F109.CB) [> 3.8849 = 6.4748 < 8.4172] w=0.0517 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)W41.CB) [> 3.5000 = 5.8333 < 7.5834] w=0.0516 to align # Constraint # added constraint: constraint((T0316)R228.CB, (T0316)I241.CB) [> 3.5925 = 5.9875 < 7.7838] w=0.0515 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)V262.CB) [> 3.9342 = 6.5570 < 8.5241] w=0.0513 to align # Constraint # added constraint: constraint((T0316)G227.CA, (T0316)Y239.CB) [> 3.9250 = 6.5416 < 8.5042] w=0.0511 to align # Constraint # added constraint: constraint((T0316)W41.CB, (T0316)Y79.CB) [> 3.5943 = 5.9905 < 7.7877] w=0.0510 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)G275.CA) [> 3.8430 = 6.4049 < 8.3264] w=0.0510 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)T96.CB) [> 4.3900 = 7.3167 < 9.5118] w=0.0509 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)V274.CB) [> 3.7227 = 6.2045 < 8.0658] w=0.0508 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)W260.CB) [> 4.1097 = 6.8495 < 8.9044] w=0.0508 to align # Constraint # added constraint: constraint((T0316)Y279.CB, (T0316)A339.CB) [> 3.3956 = 5.6593 < 7.3571] w=0.0507 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)G264.CA) [> 3.8892 = 6.4820 < 8.4267] w=0.0507 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)Y273.CB) [> 3.9381 = 6.5635 < 8.5325] w=0.0501 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)I271.CB) [> 3.6707 = 6.1178 < 7.9532] w=0.0501 to align # Constraint # added constraint: constraint((T0316)T7.CB, (T0316)N257.CB) [> 4.5346 = 7.5576 < 9.8249] w=0.0501 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)M168.CB) [> 4.2662 = 7.1104 < 9.2435] w=0.0497 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)H323.CB) [> 4.5338 = 7.5563 < 9.8231] w=0.0494 to align # Constraint # added constraint: constraint((T0316)Y129.CB, (T0316)M142.CB) [> 3.3229 = 5.5381 < 7.1996] w=0.0490 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)V346.CB) [> 4.1810 = 6.9683 < 9.0588] w=0.0489 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)L355.CB) [> 4.1643 = 6.9406 < 9.0227] w=0.0487 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)G357.CA) [> 3.3656 = 5.6094 < 7.2922] w=0.0487 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)G356.CA) [> 3.7094 = 6.1823 < 8.0370] w=0.0487 to align # Constraint # added constraint: constraint((T0316)D317.CB, (T0316)Y349.CB) [> 4.1173 = 6.8622 < 8.9209] w=0.0486 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)V320.CB) [> 3.6210 = 6.0350 < 7.8455] w=0.0486 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)G358.CA) [> 3.7668 = 6.2780 < 8.1614] w=0.0481 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)G358.CA) [> 2.7427 = 4.5711 < 5.9425] w=0.0481 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)T329.CB) [> 3.5770 = 5.9616 < 7.7501] w=0.0481 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)V331.CB) [> 3.6366 = 6.0610 < 7.8793] w=0.0481 to align # Constraint # added constraint: constraint((T0316)M222.CB, (T0316)Y238.CB) [> 3.9034 = 6.5057 < 8.4574] w=0.0480 to align # Constraint # added constraint: constraint((T0316)M223.CB, (T0316)Y238.CB) [> 3.3967 = 5.6611 < 7.3595] w=0.0480 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)G357.CA) [> 4.4410 = 7.4017 < 9.6222] w=0.0480 to align # Constraint # added constraint: constraint((T0316)L288.CB, (T0316)L355.CB) [> 3.8138 = 6.3564 < 8.2633] w=0.0480 to align # Constraint # added constraint: constraint((T0316)I241.CB, (T0316)V262.CB) [> 3.9984 = 6.6640 < 8.6632] w=0.0478 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)D350.CB) [> 3.1497 = 5.2494 < 6.8243] w=0.0478 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)F201.CB) [> 3.6709 = 6.1182 < 7.9536] w=0.0477 to align # Constraint # added constraint: constraint((T0316)Y313.CB, (T0316)R338.CB) [> 4.0706 = 6.7844 < 8.8197] w=0.0475 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)L143.CB) [> 3.7012 = 6.1687 < 8.0193] w=0.0473 to align # Constraint # added constraint: constraint((T0316)G248.CA, (T0316)F261.CB) [> 4.2402 = 7.0671 < 9.1872] w=0.0472 to align # Constraint # added constraint: constraint((T0316)Q243.CB, (T0316)F261.CB) [> 3.8174 = 6.3623 < 8.2711] w=0.0471 to align # Constraint # added constraint: constraint((T0316)R134.CB, (T0316)L211.CB) [> 4.0389 = 6.7316 < 8.7511] w=0.0465 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)C200.CB) [> 3.8280 = 6.3800 < 8.2940] w=0.0465 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)S157.CB) [> 3.8963 = 6.4938 < 8.4419] w=0.0465 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)Y115.CB) [> 4.4034 = 7.3390 < 9.5407] w=0.0464 to align # Constraint # added constraint: constraint((T0316)L211.CB, (T0316)T286.CB) [> 4.0896 = 6.8161 < 8.8609] w=0.0464 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)T296.CB) [> 4.1838 = 6.9730 < 9.0649] w=0.0464 to align # Constraint # added constraint: constraint((T0316)L143.CB, (T0316)F295.CB) [> 4.7170 = 7.8616 < 10.2201] w=0.0464 to align # Constraint # added constraint: constraint((T0316)L143.CB, (T0316)T296.CB) [> 3.0492 = 5.0820 < 6.6066] w=0.0464 to align # Constraint # added constraint: constraint((T0316)A52.CB, (T0316)T197.CB) [> 4.2002 = 7.0003 < 9.1004] w=0.0464 to align # Constraint # added constraint: constraint((T0316)F295.CB, (T0316)L355.CB) [> 3.5087 = 5.8479 < 7.6023] w=0.0464 to align # Constraint # added constraint: constraint((T0316)T139.CB, (T0316)L174.CB) [> 4.2008 = 7.0013 < 9.1017] w=0.0463 to align # Constraint # added constraint: constraint((T0316)R131.CB, (T0316)V146.CB) [> 3.2776 = 5.4627 < 7.1015] w=0.0463 to align # Constraint # added constraint: constraint((T0316)Y214.CB, (T0316)W260.CB) [> 3.4498 = 5.7496 < 7.4745] w=0.0463 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)L272.CB) [> 3.9407 = 6.5679 < 8.5382] w=0.0463 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)A121.CB) [> 3.9936 = 6.6560 < 8.6528] w=0.0462 to align # Constraint # added constraint: constraint((T0316)K194.CB, (T0316)F210.CB) [> 3.5600 = 5.9333 < 7.7133] w=0.0462 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)A183.CB) [> 3.4544 = 5.7573 < 7.4845] w=0.0462 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)H141.CB) [> 4.3526 = 7.2543 < 9.4306] w=0.0462 to align # Constraint # added constraint: constraint((T0316)R134.CB, (T0316)V293.CB) [> 4.1055 = 6.8425 < 8.8952] w=0.0462 to align # Constraint # added constraint: constraint((T0316)R134.CB, (T0316)E289.CB) [> 3.2407 = 5.4012 < 7.0216] w=0.0462 to align # Constraint # added constraint: constraint((T0316)I241.CB, (T0316)F261.CB) [> 3.6537 = 6.0895 < 7.9163] w=0.0462 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)L156.CB) [> 4.0725 = 6.7874 < 8.8237] w=0.0462 to align # Constraint # added constraint: constraint((T0316)N40.CB, (T0316)T51.CB) [> 3.6381 = 6.0635 < 7.8825] w=0.0462 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)F109.CB) [> 3.6553 = 6.0922 < 7.9198] w=0.0461 to align # Constraint # added constraint: constraint((T0316)Y214.CB, (T0316)A309.CB) [> 4.2138 = 7.0230 < 9.1299] w=0.0461 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)L156.CB) [> 4.2377 = 7.0629 < 9.1818] w=0.0461 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)F210.CB) [> 3.9884 = 6.6473 < 8.6415] w=0.0460 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)E330.CB) [> 3.1138 = 5.1896 < 6.7465] w=0.0460 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)G351.CA) [> 4.1136 = 6.8560 < 8.9129] w=0.0459 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)S160.CB) [> 3.3621 = 5.6035 < 7.2846] w=0.0459 to align # Constraint # added constraint: constraint((T0316)R131.CB, (T0316)V140.CB) [> 3.3484 = 5.5808 < 7.2550] w=0.0459 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)L25.CB) [> 3.5643 = 5.9405 < 7.7226] w=0.0458 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)Y273.CB) [> 3.3915 = 5.6526 < 7.3483] w=0.0457 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)F333.CB) [> 4.1588 = 6.9313 < 9.0107] w=0.0457 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)V124.CB) [> 3.8613 = 6.4355 < 8.3661] w=0.0457 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)Y123.CB) [> 3.6223 = 6.0372 < 7.8484] w=0.0457 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)V262.CB) [> 4.2358 = 7.0597 < 9.1776] w=0.0457 to align # Constraint # added constraint: constraint((T0316)A183.CB, (T0316)I199.CB) [> 3.4450 = 5.7417 < 7.4642] w=0.0457 to align # Constraint # added constraint: constraint((T0316)R221.CB, (T0316)G231.CA) [> 3.6658 = 6.1097 < 7.9426] w=0.0455 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)F75.CB) [> 4.1856 = 6.9759 < 9.0687] w=0.0455 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)R92.CB) [> 3.3332 = 5.5554 < 7.2220] w=0.0455 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)G35.CA) [> 4.6099 = 7.6832 < 9.9882] w=0.0455 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)A339.CB) [> 4.3038 = 7.1729 < 9.3248] w=0.0454 to align # Constraint # added constraint: constraint((T0316)R92.CB, (T0316)Y115.CB) [> 3.6721 = 6.1202 < 7.9563] w=0.0454 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)I202.CB) [> 3.6595 = 6.0991 < 7.9289] w=0.0453 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)D100.CB) [> 3.7857 = 6.3094 < 8.2022] w=0.0453 to align # Constraint # added constraint: constraint((T0316)G277.CA, (T0316)P300.CB) [> 3.7900 = 6.3166 < 8.2116] w=0.0451 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)V274.CB) [> 3.6806 = 6.1344 < 7.9747] w=0.0451 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)Y273.CB) [> 3.9776 = 6.6294 < 8.6182] w=0.0451 to align # Constraint # added constraint: constraint((T0316)G251.CA, (T0316)W260.CB) [> 3.6679 = 6.1131 < 7.9470] w=0.0451 to align # Constraint # added constraint: constraint((T0316)V225.CB, (T0316)Y238.CB) [> 3.9250 = 6.5417 < 8.5042] w=0.0450 to align # Constraint # added constraint: constraint((T0316)D100.CB, (T0316)Y115.CB) [> 4.2985 = 7.1642 < 9.3135] w=0.0448 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)V124.CB) [> 4.4676 = 7.4460 < 9.6798] w=0.0448 to align # Constraint # added constraint: constraint((T0316)S318.CB, (T0316)P336.CB) [> 3.0849 = 5.1416 < 6.6840] w=0.0446 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)Y214.CB) [> 3.6091 = 6.0152 < 7.8198] w=0.0446 to align # Constraint # added constraint: constraint((T0316)G248.CA, (T0316)V263.CB) [> 3.9979 = 6.6632 < 8.6621] w=0.0445 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)F155.CB) [> 3.7159 = 6.1931 < 8.0511] w=0.0444 to align # Constraint # added constraint: constraint((T0316)G250.CA, (T0316)V263.CB) [> 3.7886 = 6.3143 < 8.2086] w=0.0443 to align # Constraint # added constraint: constraint((T0316)I241.CB, (T0316)V263.CB) [> 4.1638 = 6.9396 < 9.0215] w=0.0442 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)T329.CB) [> 4.0809 = 6.8015 < 8.8419] w=0.0439 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)Q218.CB) [> 3.3008 = 5.5014 < 7.1519] w=0.0438 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)V263.CB) [> 3.7527 = 6.2546 < 8.1309] w=0.0437 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)D361.CB) [> 3.1642 = 5.2737 < 6.8558] w=0.0436 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)D361.CB) [> 3.5306 = 5.8844 < 7.6497] w=0.0436 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)V262.CB) [> 4.5204 = 7.5340 < 9.7943] w=0.0433 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)I249.CB) [> 3.4426 = 5.7376 < 7.4589] w=0.0432 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)A339.CB) [> 4.4187 = 7.3645 < 9.5738] w=0.0430 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)K319.CB) [> 4.4919 = 7.4865 < 9.7325] w=0.0429 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)P336.CB) [> 3.9245 = 6.5408 < 8.5031] w=0.0428 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)D256.CB) [> 4.5381 = 7.5635 < 9.8326] w=0.0426 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)A339.CB) [> 3.3139 = 5.5232 < 7.1801] w=0.0426 to align # Constraint # added constraint: constraint((T0316)V140.CB, (T0316)G203.CA) [> 3.7578 = 6.2631 < 8.1420] w=0.0422 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)I249.CB) [> 4.1561 = 6.9269 < 9.0050] w=0.0420 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)I199.CB) [> 3.4376 = 5.7293 < 7.4481] w=0.0420 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)L267.CB) [> 3.8562 = 6.4270 < 8.3551] w=0.0420 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)G203.CA) [> 3.9269 = 6.5448 < 8.5082] w=0.0420 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)I202.CB) [> 3.9465 = 6.5776 < 8.5508] w=0.0420 to align # Constraint # added constraint: constraint((T0316)V140.CB, (T0316)A186.CB) [> 4.3370 = 7.2283 < 9.3968] w=0.0417 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)Y115.CB) [> 3.3480 = 5.5801 < 7.2541] w=0.0414 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)L113.CB) [> 4.0422 = 6.7371 < 8.7582] w=0.0414 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)F112.CB) [> 2.2222 = 3.7036 < 4.8147] w=0.0414 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)F109.CB) [> 3.9747 = 6.6245 < 8.6119] w=0.0414 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)V263.CB) [> 4.4060 = 7.3433 < 9.5463] w=0.0412 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)V293.CB) [> 4.4718 = 7.4529 < 9.6888] w=0.0412 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)T329.CB) [> 3.6769 = 6.1282 < 7.9667] w=0.0412 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)G358.CA) [> 3.2923 = 5.4871 < 7.1332] w=0.0412 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)L359.CB) [> 3.6293 = 6.0489 < 7.8636] w=0.0412 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)G358.CA) [> 3.6146 = 6.0243 < 7.8316] w=0.0412 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)L359.CB) [> 3.1063 = 5.1771 < 6.7303] w=0.0412 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)F348.CB) [> 4.2023 = 7.0038 < 9.1049] w=0.0412 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)G356.CA) [> 3.5948 = 5.9913 < 7.7887] w=0.0412 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)G357.CA) [> 3.4138 = 5.6897 < 7.3966] w=0.0412 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)L355.CB) [> 3.9717 = 6.6195 < 8.6053] w=0.0412 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)V263.CB) [> 2.7949 = 4.6582 < 6.0557] w=0.0411 to align # Constraint # added constraint: constraint((T0316)H294.CB, (T0316)E353.CB) [> 4.2993 = 7.1655 < 9.3151] w=0.0410 to align # Constraint # added constraint: constraint((T0316)H294.CB, (T0316)L355.CB) [> 3.5729 = 5.9549 < 7.7413] w=0.0407 to align # Constraint # added constraint: constraint((T0316)H294.CB, (T0316)G356.CA) [> 4.2251 = 7.0419 < 9.1545] w=0.0407 to align # Constraint # added constraint: constraint((T0316)F295.CB, (T0316)D350.CB) [> 4.5526 = 7.5877 < 9.8640] w=0.0407 to align # Constraint # added constraint: constraint((T0316)P300.CB, (T0316)V324.CB) [> 4.3829 = 7.3048 < 9.4963] w=0.0407 to align # Constraint # added constraint: constraint((T0316)L305.CB, (T0316)Y349.CB) [> 3.7355 = 6.2258 < 8.0935] w=0.0407 to align # Constraint # added constraint: constraint((T0316)T286.CB, (T0316)Q337.CB) [> 4.3050 = 7.1750 < 9.3275] w=0.0405 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)V49.CB) [> 3.6365 = 6.0608 < 7.8790] w=0.0404 to align # Constraint # added constraint: constraint((T0316)L211.CB, (T0316)I241.CB) [> 3.5895 = 5.9825 < 7.7772] w=0.0403 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)T329.CB) [> 4.3103 = 7.1839 < 9.3391] w=0.0403 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)D266.CB) [> 3.2963 = 5.4939 < 7.1420] w=0.0402 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)G145.CA) [> 3.7453 = 6.2422 < 8.1148] w=0.0397 to align # Constraint # added constraint: constraint((T0316)R131.CB, (T0316)R144.CB) [> 3.5361 = 5.8936 < 7.6617] w=0.0396 to align # Constraint # added constraint: constraint((T0316)G250.CA, (T0316)P259.CB) [> 3.3866 = 5.6443 < 7.3376] w=0.0395 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)P259.CB) [> 4.1894 = 6.9823 < 9.0770] w=0.0395 to align # Constraint # added constraint: constraint((T0316)G227.CA, (T0316)I241.CB) [> 3.8524 = 6.4207 < 8.3468] w=0.0394 to align # Constraint # added constraint: constraint((T0316)S287.CB, (T0316)V331.CB) [> 4.3219 = 7.2031 < 9.3641] w=0.0392 to align # Constraint # added constraint: constraint((T0316)L236.CB, (T0316)V263.CB) [> 3.9209 = 6.5349 < 8.4953] w=0.0392 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)L359.CB) [> 4.4517 = 7.4194 < 9.6453] w=0.0389 to align # Constraint # added constraint: constraint((T0316)F210.CB, (T0316)F278.CB) [> 3.8823 = 6.4704 < 8.4116] w=0.0387 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)N206.CB) [> 3.5155 = 5.8592 < 7.6170] w=0.0387 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)G198.CA) [> 3.3622 = 5.6036 < 7.2847] w=0.0387 to align # Constraint # added constraint: constraint((T0316)S196.CB, (T0316)K208.CB) [> 3.3532 = 5.5887 < 7.2653] w=0.0387 to align # Constraint # added constraint: constraint((T0316)D100.CB, (T0316)G198.CA) [> 3.5701 = 5.9502 < 7.7353] w=0.0387 to align # Constraint # added constraint: constraint((T0316)D100.CB, (T0316)C200.CB) [> 3.7234 = 6.2056 < 8.0673] w=0.0387 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)T153.CB) [> 3.6202 = 6.0337 < 7.8438] w=0.0387 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)L156.CB) [> 3.5012 = 5.8353 < 7.5859] w=0.0387 to align # Constraint # added constraint: constraint((T0316)F87.CB, (T0316)C103.CB) [> 3.7278 = 6.2130 < 8.0769] w=0.0387 to align # Constraint # added constraint: constraint((T0316)V49.CB, (T0316)I107.CB) [> 4.3049 = 7.1748 < 9.3272] w=0.0387 to align # Constraint # added constraint: constraint((T0316)K105.CB, (T0316)V146.CB) [> 4.3405 = 7.2342 < 9.4045] w=0.0387 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)L211.CB) [> 3.4462 = 5.7437 < 7.4668] w=0.0386 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)F169.CB) [> 3.9545 = 6.5908 < 8.5681] w=0.0386 to align # Constraint # added constraint: constraint((T0316)T296.CB, (T0316)L305.CB) [> 4.1026 = 6.8377 < 8.8890] w=0.0386 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)V293.CB) [> 2.0617 = 3.4361 < 4.4670] w=0.0386 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)A290.CB) [> 4.4035 = 7.3391 < 9.5409] w=0.0386 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)E289.CB) [> 3.6447 = 6.0745 < 7.8968] w=0.0386 to align # Constraint # added constraint: constraint((T0316)D100.CB, (T0316)K194.CB) [> 3.0401 = 5.0668 < 6.5869] w=0.0386 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)V140.CB) [> 4.0162 = 6.6936 < 8.7017] w=0.0386 to align # Constraint # added constraint: constraint((T0316)V293.CB, (T0316)C354.CB) [> 3.5932 = 5.9887 < 7.7853] w=0.0386 to align # Constraint # added constraint: constraint((T0316)Y214.CB, (T0316)T286.CB) [> 3.7820 = 6.3034 < 8.1945] w=0.0386 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)V140.CB) [> 3.0316 = 5.0526 < 6.5684] w=0.0385 to align # Constraint # added constraint: constraint((T0316)V132.CB, (T0316)R297.CB) [> 3.6178 = 6.0297 < 7.8386] w=0.0385 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)T139.CB) [> 3.7729 = 6.2882 < 8.1746] w=0.0385 to align # Constraint # added constraint: constraint((T0316)C103.CB, (T0316)C200.CB) [> 3.2652 = 5.4420 < 7.0746] w=0.0385 to align # Constraint # added constraint: constraint((T0316)C103.CB, (T0316)I199.CB) [> 4.1346 = 6.8909 < 8.9582] w=0.0385 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)V263.CB) [> 3.9671 = 6.6119 < 8.5955] w=0.0385 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)D195.CB) [> 3.9092 = 6.5153 < 8.4699] w=0.0385 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)T240.CB) [> 4.2009 = 7.0015 < 9.1019] w=0.0383 to align # Constraint # added constraint: constraint((T0316)F207.CB, (T0316)W260.CB) [> 3.4227 = 5.7045 < 7.4158] w=0.0383 to align # Constraint # added constraint: constraint((T0316)M142.CB, (T0316)L156.CB) [> 4.2652 = 7.1087 < 9.2413] w=0.0383 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)L156.CB) [> 2.6909 = 4.4849 < 5.8304] w=0.0383 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)L272.CB) [> 3.5646 = 5.9410 < 7.7233] w=0.0383 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)I271.CB) [> 4.2257 = 7.0429 < 9.1557] w=0.0383 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)Y273.CB) [> 4.0591 = 6.7652 < 8.7948] w=0.0383 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)F169.CB) [> 4.1043 = 6.8404 < 8.8926] w=0.0383 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)C50.CB) [> 3.8267 = 6.3779 < 8.2912] w=0.0382 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)V101.CB) [> 3.7951 = 6.3252 < 8.2227] w=0.0382 to align # Constraint # added constraint: constraint((T0316)D32.CB, (T0316)Y91.CB) [> 4.1406 = 6.9010 < 8.9713] w=0.0382 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)V274.CB) [> 3.6075 = 6.0125 < 7.8162] w=0.0381 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)A339.CB) [> 3.1894 = 5.3157 < 6.9104] w=0.0381 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)V274.CB) [> 3.6532 = 6.0887 < 7.9153] w=0.0381 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)A116.CB) [> 4.0446 = 6.7410 < 8.7633] w=0.0381 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)S157.CB) [> 4.4180 = 7.3633 < 9.5723] w=0.0381 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)P97.CB) [> 4.2862 = 7.1436 < 9.2867] w=0.0380 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)G275.CA) [> 3.7994 = 6.3323 < 8.2320] w=0.0380 to align # Constraint # added constraint: constraint((T0316)V140.CB, (T0316)T197.CB) [> 4.3768 = 7.2947 < 9.4831] w=0.0379 to align # Constraint # added constraint: constraint((T0316)G48.CA, (T0316)C103.CB) [> 3.9083 = 6.5138 < 8.4679] w=0.0379 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)D43.CB) [> 3.6928 = 6.1547 < 8.0011] w=0.0379 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)V49.CB) [> 3.5473 = 5.9122 < 7.6859] w=0.0378 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)G250.CA) [> 3.5904 = 5.9840 < 7.7792] w=0.0374 to align # Constraint # added constraint: constraint((T0316)G250.CA, (T0316)V262.CB) [> 3.5306 = 5.8843 < 7.6495] w=0.0374 to align # Constraint # added constraint: constraint((T0316)Q252.CB, (T0316)F261.CB) [> 4.0373 = 6.7288 < 8.7474] w=0.0372 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)Q337.CB) [> 4.4559 = 7.4265 < 9.6545] w=0.0370 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)Q252.CB) [> 3.9700 = 6.6167 < 8.6017] w=0.0370 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)V263.CB) [> 3.6904 = 6.1508 < 7.9960] w=0.0369 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)G264.CA) [> 3.2787 = 5.4646 < 7.1040] w=0.0368 to align # Constraint # added constraint: constraint((T0316)Q344.CB, (T0316)G358.CA) [> 3.6838 = 6.1396 < 7.9815] w=0.0365 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)V263.CB) [> 3.8546 = 6.4243 < 8.3515] w=0.0364 to align # Constraint # added constraint: constraint((T0316)M230.CB, (T0316)Y273.CB) [> 4.3327 = 7.2212 < 9.3876] w=0.0364 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)L359.CB) [> 4.0017 = 6.6696 < 8.6705] w=0.0364 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)G343.CA) [> 3.9181 = 6.5302 < 8.4893] w=0.0364 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)L359.CB) [> 3.6587 = 6.0978 < 7.9271] w=0.0364 to align # Constraint # added constraint: constraint((T0316)Q344.CB, (T0316)G357.CA) [> 3.4636 = 5.7727 < 7.5045] w=0.0364 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)F261.CB) [> 3.4096 = 5.6827 < 7.3874] w=0.0362 to align # Constraint # added constraint: constraint((T0316)L236.CB, (T0316)V262.CB) [> 3.6577 = 6.0962 < 7.9250] w=0.0361 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)K265.CB) [> 3.2520 = 5.4200 < 7.0459] w=0.0360 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)V263.CB) [> 4.1263 = 6.8772 < 8.9404] w=0.0360 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V262.CB) [> 3.2275 = 5.3791 < 6.9929] w=0.0360 to align # Constraint # added constraint: constraint((T0316)M230.CB, (T0316)V262.CB) [> 3.8371 = 6.3952 < 8.3138] w=0.0360 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)K265.CB) [> 3.9880 = 6.6467 < 8.6406] w=0.0358 to align # Constraint # added constraint: constraint((T0316)R131.CB, (T0316)H141.CB) [> 3.5353 = 5.8922 < 7.6599] w=0.0354 to align # Constraint # added constraint: constraint((T0316)I241.CB, (T0316)G250.CA) [> 4.1414 = 6.9023 < 8.9730] w=0.0351 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)G251.CA) [> 4.1721 = 6.9535 < 9.0395] w=0.0351 to align # Constraint # added constraint: constraint((T0316)V140.CB, (T0316)T190.CB) [> 3.2780 = 5.4634 < 7.1024] w=0.0350 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)V49.CB) [> 4.0845 = 6.8075 < 8.8497] w=0.0349 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)H128.CB) [> 4.3015 = 7.1692 < 9.3199] w=0.0348 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V263.CB) [> 4.5461 = 7.5769 < 9.8499] w=0.0348 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)V346.CB) [> 4.2498 = 7.0831 < 9.2080] w=0.0347 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)W260.CB) [> 3.5965 = 5.9942 < 7.7924] w=0.0346 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)G203.CA) [> 4.0219 = 6.7032 < 8.7142] w=0.0346 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)G203.CA) [> 3.5634 = 5.9390 < 7.7207] w=0.0342 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)Q218.CB) [> 4.3321 = 7.2202 < 9.3862] w=0.0342 to align # Constraint # added constraint: constraint((T0316)A183.CB, (T0316)S196.CB) [> 3.7713 = 6.2856 < 8.1713] w=0.0342 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)Q165.CB) [> 3.0355 = 5.0592 < 6.5770] w=0.0342 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)M299.CB) [> 4.1920 = 6.9866 < 9.0826] w=0.0340 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)E298.CB) [> 2.5957 = 4.3262 < 5.6241] w=0.0340 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)Q276.CB) [> 3.7841 = 6.3068 < 8.1989] w=0.0340 to align # Constraint # added constraint: constraint((T0316)V49.CB, (T0316)E76.CB) [> 3.3240 = 5.5399 < 7.2019] w=0.0336 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)V262.CB) [> 4.0568 = 6.7613 < 8.7897] w=0.0336 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)C354.CB) [> 3.8973 = 6.4956 < 8.4443] w=0.0336 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)R312.CB) [> 4.5361 = 7.5601 < 9.8281] w=0.0336 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)R314.CB) [> 4.0074 = 6.6790 < 8.6827] w=0.0336 to align # Constraint # added constraint: constraint((T0316)R228.CB, (T0316)G275.CA) [> 3.9033 = 6.5055 < 8.4572] w=0.0336 to align # Constraint # added constraint: constraint((T0316)S287.CB, (T0316)I332.CB) [> 2.9952 = 4.9920 < 6.4896] w=0.0336 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)L272.CB) [> 3.9561 = 6.5935 < 8.5715] w=0.0335 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)I271.CB) [> 3.5531 = 5.9218 < 7.6984] w=0.0335 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)V262.CB) [> 3.2583 = 5.4305 < 7.0596] w=0.0334 to align # Constraint # added constraint: constraint((T0316)F303.CB, (T0316)L355.CB) [> 4.6237 = 7.7062 < 10.0181] w=0.0334 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)A258.CB) [> 3.9783 = 6.6304 < 8.6196] w=0.0333 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)K328.CB) [> 4.3491 = 7.2484 < 9.4229] w=0.0333 to align # Constraint # added constraint: constraint((T0316)I271.CB, (T0316)K328.CB) [> 3.4194 = 5.6990 < 7.4087] w=0.0333 to align # Constraint # added constraint: constraint((T0316)H294.CB, (T0316)C354.CB) [> 4.2722 = 7.1204 < 9.2565] w=0.0333 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)G264.CA) [> 3.7833 = 6.3056 < 8.1973] w=0.0332 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)V73.CB) [> 4.0540 = 6.7568 < 8.7838] w=0.0332 to align # Constraint # added constraint: constraint((T0316)A309.CB, (T0316)V347.CB) [> 4.0280 = 6.7133 < 8.7273] w=0.0331 to align # Constraint # added constraint: constraint((T0316)L143.CB, (T0316)P259.CB) [> 4.1378 = 6.8963 < 8.9652] w=0.0330 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)Q276.CB) [> 3.6687 = 6.1145 < 7.9488] w=0.0329 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)F261.CB) [> 3.7606 = 6.2677 < 8.1481] w=0.0328 to align # Constraint # added constraint: constraint((T0316)S72.CB, (T0316)V101.CB) [> 3.8728 = 6.4546 < 8.3910] w=0.0327 to align # Constraint # added constraint: constraint((T0316)M223.CB, (T0316)Y239.CB) [> 3.6212 = 6.0353 < 7.8458] w=0.0326 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)K328.CB) [> 4.1087 = 6.8478 < 8.9021] w=0.0326 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)V49.CB) [> 3.8445 = 6.4076 < 8.3299] w=0.0323 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)L272.CB) [> 3.8190 = 6.3649 < 8.2744] w=0.0321 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)L272.CB) [> 3.7754 = 6.2923 < 8.1799] w=0.0321 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)V274.CB) [> 3.4728 = 5.7880 < 7.5244] w=0.0321 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)Y273.CB) [> 4.0129 = 6.6881 < 8.6946] w=0.0321 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)V274.CB) [> 3.6239 = 6.0398 < 7.8517] w=0.0321 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)K265.CB) [> 3.9272 = 6.5452 < 8.5088] w=0.0319 to align # Constraint # added constraint: constraint((T0316)G275.CA, (T0316)C354.CB) [> 4.4636 = 7.4392 < 9.6710] w=0.0318 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)W260.CB) [> 3.6825 = 6.1375 < 7.9787] w=0.0315 to align # Constraint # added constraint: constraint((T0316)L236.CB, (T0316)F261.CB) [> 3.9135 = 6.5224 < 8.4791] w=0.0315 to align # Constraint # added constraint: constraint((T0316)L236.CB, (T0316)W260.CB) [> 3.3142 = 5.5237 < 7.1809] w=0.0315 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)V262.CB) [> 4.0094 = 6.6823 < 8.6870] w=0.0315 to align # Constraint # added constraint: constraint((T0316)K205.CB, (T0316)P259.CB) [> 4.5666 = 7.6109 < 9.8942] w=0.0313 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)P259.CB) [> 3.6274 = 6.0457 < 7.8594] w=0.0313 to align # Constraint # added constraint: constraint((T0316)G248.CA, (T0316)V262.CB) [> 3.4460 = 5.7432 < 7.4662] w=0.0311 to align # Constraint # added constraint: constraint((T0316)Q158.CB, (T0316)M168.CB) [> 4.2976 = 7.1626 < 9.3114] w=0.0310 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)F201.CB) [> 3.6946 = 6.1577 < 8.0050] w=0.0310 to align # Constraint # added constraint: constraint((T0316)L88.CB, (T0316)C103.CB) [> 4.3752 = 7.2920 < 9.4796] w=0.0310 to align # Constraint # added constraint: constraint((T0316)S196.CB, (T0316)N206.CB) [> 4.3875 = 7.3125 < 9.5063] w=0.0310 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)Q158.CB) [> 3.6049 = 6.0082 < 7.8106] w=0.0310 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)L156.CB) [> 4.0262 = 6.7104 < 8.7235] w=0.0310 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)F155.CB) [> 3.7265 = 6.2108 < 8.0740] w=0.0310 to align # Constraint # added constraint: constraint((T0316)T197.CB, (T0316)F207.CB) [> 4.1765 = 6.9609 < 9.0492] w=0.0310 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)P170.CB) [> 4.2510 = 7.0849 < 9.2104] w=0.0310 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)L171.CB) [> 3.0993 = 5.1655 < 6.7152] w=0.0310 to align # Constraint # added constraint: constraint((T0316)S196.CB, (T0316)F207.CB) [> 3.3494 = 5.5823 < 7.2570] w=0.0310 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)A290.CB) [> 4.3646 = 7.2743 < 9.4566] w=0.0310 to align # Constraint # added constraint: constraint((T0316)D229.CB, (T0316)I241.CB) [> 3.6198 = 6.0329 < 7.8428] w=0.0309 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)F155.CB) [> 3.5016 = 5.8361 < 7.5869] w=0.0309 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)F155.CB) [> 3.8411 = 6.4018 < 8.3224] w=0.0309 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)L156.CB) [> 3.9376 = 6.5627 < 8.5316] w=0.0309 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)S157.CB) [> 3.9454 = 6.5756 < 8.5483] w=0.0309 to align # Constraint # added constraint: constraint((T0316)V293.CB, (T0316)C307.CB) [> 3.9497 = 6.5829 < 8.5577] w=0.0309 to align # Constraint # added constraint: constraint((T0316)E106.CB, (T0316)T153.CB) [> 4.7013 = 7.8354 < 10.1861] w=0.0309 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)Q292.CB) [> 4.3781 = 7.2969 < 9.4860] w=0.0309 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)T296.CB) [> 2.7304 = 4.5507 < 5.9159] w=0.0309 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)R297.CB) [> 4.2555 = 7.0925 < 9.2202] w=0.0309 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)S287.CB) [> 3.5052 = 5.8419 < 7.5945] w=0.0308 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)F109.CB) [> 4.1992 = 6.9987 < 9.0983] w=0.0308 to align # Constraint # added constraint: constraint((T0316)G145.CA, (T0316)L159.CB) [> 4.3833 = 7.3055 < 9.4972] w=0.0308 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)F155.CB) [> 4.2886 = 7.1477 < 9.2920] w=0.0308 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)L159.CB) [> 3.6782 = 6.1303 < 7.9694] w=0.0308 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)V322.CB) [> 3.0978 = 5.1629 < 6.7118] w=0.0308 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)K310.CB) [> 3.6156 = 6.0259 < 7.8337] w=0.0308 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)F311.CB) [> 4.1397 = 6.8994 < 8.9693] w=0.0308 to align # Constraint # added constraint: constraint((T0316)K265.CB, (T0316)I340.CB) [> 3.2039 = 5.3399 < 6.9418] w=0.0308 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)D32.CB) [> 2.9711 = 4.9519 < 6.4375] w=0.0308 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)W260.CB) [> 3.5667 = 5.9445 < 7.7279] w=0.0308 to align # Constraint # added constraint: constraint((T0316)L215.CB, (T0316)G235.CA) [> 3.5416 = 5.9027 < 7.6735] w=0.0308 to align # Constraint # added constraint: constraint((T0316)G264.CA, (T0316)Y273.CB) [> 4.1032 = 6.8387 < 8.8904] w=0.0307 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)V293.CB) [> 3.7796 = 6.2993 < 8.1891] w=0.0307 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)L215.CB) [> 3.5643 = 5.9405 < 7.7226] w=0.0307 to align # Constraint # added constraint: constraint((T0316)A133.CB, (T0316)L159.CB) [> 4.2415 = 7.0692 < 9.1900] w=0.0307 to align # Constraint # added constraint: constraint((T0316)F207.CB, (T0316)F261.CB) [> 2.9986 = 4.9976 < 6.4969] w=0.0307 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)V274.CB) [> 4.0881 = 6.8134 < 8.8575] w=0.0307 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)V274.CB) [> 4.0635 = 6.7724 < 8.8042] w=0.0307 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)E306.CB) [> 3.4579 = 5.7631 < 7.4920] w=0.0307 to align # Constraint # added constraint: constraint((T0316)Q344.CB, (T0316)G356.CA) [> 3.3085 = 5.5142 < 7.1684] w=0.0307 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)P97.CB) [> 3.2856 = 5.4761 < 7.1189] w=0.0307 to align # Constraint # added constraint: constraint((T0316)L236.CB, (T0316)V324.CB) [> 3.7731 = 6.2884 < 8.1749] w=0.0307 to align # Constraint # added constraint: constraint((T0316)L88.CB, (T0316)V101.CB) [> 3.5352 = 5.8920 < 7.6596] w=0.0307 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)L164.CB) [> 3.9479 = 6.5798 < 8.5537] w=0.0307 to align # Constraint # added constraint: constraint((T0316)P259.CB, (T0316)G277.CA) [> 4.3382 = 7.2304 < 9.3995] w=0.0307 to align # Constraint # added constraint: constraint((T0316)P259.CB, (T0316)Q276.CB) [> 2.9397 = 4.8995 < 6.3694] w=0.0307 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)H128.CB) [> 4.3026 = 7.1710 < 9.3223] w=0.0306 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)F333.CB) [> 3.8260 = 6.3766 < 8.2896] w=0.0306 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)V73.CB) [> 4.0623 = 6.7705 < 8.8016] w=0.0306 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)L272.CB) [> 4.0735 = 6.7892 < 8.8260] w=0.0306 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)I202.CB) [> 4.0415 = 6.7359 < 8.7566] w=0.0306 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)G277.CA) [> 4.1224 = 6.8706 < 8.9318] w=0.0306 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)P97.CB) [> 2.8979 = 4.8298 < 6.2787] w=0.0305 to align # Constraint # added constraint: constraint((T0316)M102.CB, (T0316)A125.CB) [> 3.7243 = 6.2072 < 8.0693] w=0.0305 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)G275.CA) [> 4.2553 = 7.0921 < 9.2197] w=0.0305 to align # Constraint # added constraint: constraint((T0316)T139.CB, (T0316)A186.CB) [> 3.9011 = 6.5018 < 8.4523] w=0.0305 to align # Constraint # added constraint: constraint((T0316)S20.CB, (T0316)C50.CB) [> 3.3846 = 5.6409 < 7.3332] w=0.0304 to align # Constraint # added constraint: constraint((T0316)N74.CB, (T0316)P99.CB) [> 4.1881 = 6.9802 < 9.0742] w=0.0304 to align # Constraint # added constraint: constraint((T0316)N4.CB, (T0316)Q29.CB) [> 3.8083 = 6.3472 < 8.2513] w=0.0304 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)V21.CB) [> 3.6438 = 6.0730 < 7.8949] w=0.0304 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)F261.CB) [> 3.8804 = 6.4673 < 8.4075] w=0.0304 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)N270.CB) [> 4.4578 = 7.4297 < 9.6586] w=0.0304 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)A258.CB) [> 4.4393 = 7.3988 < 9.6185] w=0.0303 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)V124.CB) [> 3.9307 = 6.5511 < 8.5164] w=0.0303 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)A125.CB) [> 3.4390 = 5.7317 < 7.4513] w=0.0303 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)T126.CB) [> 3.4498 = 5.7496 < 7.4745] w=0.0303 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)W260.CB) [> 3.8268 = 6.3780 < 8.2914] w=0.0303 to align # Constraint # added constraint: constraint((T0316)G251.CA, (T0316)V263.CB) [> 3.5051 = 5.8418 < 7.5943] w=0.0302 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)N257.CB) [> 4.3508 = 7.2513 < 9.4267] w=0.0301 to align # Constraint # added constraint: constraint((T0316)V293.CB, (T0316)A309.CB) [> 3.7768 = 6.2947 < 8.1831] w=0.0301 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)M102.CB) [> 3.6727 = 6.1212 < 7.9576] w=0.0301 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)V101.CB) [> 3.5978 = 5.9964 < 7.7953] w=0.0300 to align # Constraint # added constraint: constraint((T0316)T329.CB, (T0316)V347.CB) [> 3.6808 = 6.1347 < 7.9751] w=0.0297 to align # Constraint # added constraint: constraint((T0316)E330.CB, (T0316)V347.CB) [> 4.1242 = 6.8737 < 8.9358] w=0.0297 to align # Constraint # added constraint: constraint((T0316)F333.CB, (T0316)A345.CB) [> 3.7897 = 6.3161 < 8.2110] w=0.0297 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)L247.CB) [> 3.9259 = 6.5431 < 8.5061] w=0.0294 to align # Constraint # added constraint: constraint((T0316)C307.CB, (T0316)T329.CB) [> 3.8582 = 6.4303 < 8.3594] w=0.0293 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)V124.CB) [> 3.6135 = 6.0226 < 7.8293] w=0.0293 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)Y154.CB) [> 3.2864 = 5.4774 < 7.1206] w=0.0293 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)G264.CA) [> 3.1474 = 5.2456 < 6.8193] w=0.0289 to align # Constraint # added constraint: constraint((T0316)T341.CB, (T0316)D361.CB) [> 3.8940 = 6.4901 < 8.4371] w=0.0289 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)F261.CB) [> 4.1220 = 6.8700 < 8.9311] w=0.0288 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)H253.CB) [> 3.9900 = 6.6500 < 8.6450] w=0.0287 to align # Constraint # added constraint: constraint((T0316)K269.CB, (T0316)V331.CB) [> 4.5641 = 7.6069 < 9.8890] w=0.0287 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)G277.CA) [> 3.4990 = 5.8316 < 7.5811] w=0.0287 to align # Constraint # added constraint: constraint((T0316)H233.CB, (T0316)Q337.CB) [> 4.3640 = 7.2734 < 9.4554] w=0.0285 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)W260.CB) [> 3.4449 = 5.7416 < 7.4640] w=0.0285 to align # Constraint # added constraint: constraint((T0316)R297.CB, (T0316)E353.CB) [> 3.6211 = 6.0352 < 7.8457] w=0.0285 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)M223.CB) [> 4.1864 = 6.9773 < 9.0705] w=0.0277 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)A258.CB) [> 3.7549 = 6.2582 < 8.1356] w=0.0277 to align # Constraint # added constraint: constraint((T0316)L283.CB, (T0316)F333.CB) [> 3.6310 = 6.0517 < 7.8672] w=0.0277 to align # Constraint # added constraint: constraint((T0316)M284.CB, (T0316)F333.CB) [> 3.4953 = 5.8255 < 7.5731] w=0.0277 to align # Constraint # added constraint: constraint((T0316)L288.CB, (T0316)V331.CB) [> 3.6635 = 6.1059 < 7.9377] w=0.0277 to align # Constraint # added constraint: constraint((T0316)A290.CB, (T0316)T329.CB) [> 3.2148 = 5.3580 < 6.9653] w=0.0277 to align # Constraint # added constraint: constraint((T0316)Q292.CB, (T0316)L355.CB) [> 3.6250 = 6.0416 < 7.8541] w=0.0277 to align # Constraint # added constraint: constraint((T0316)Q292.CB, (T0316)G356.CA) [> 3.6998 = 6.1663 < 8.0161] w=0.0277 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)Y123.CB) [> 4.1473 = 6.9123 < 8.9859] w=0.0276 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)Y123.CB) [> 3.3489 = 5.5816 < 7.2561] w=0.0276 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)Y123.CB) [> 4.4650 = 7.4416 < 9.6741] w=0.0276 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)M223.CB) [> 3.9215 = 6.5359 < 8.4966] w=0.0274 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)G251.CA) [> 3.4257 = 5.7095 < 7.4223] w=0.0274 to align # Constraint # added constraint: constraint((T0316)L283.CB, (T0316)I360.CB) [> 4.3921 = 7.3202 < 9.5163] w=0.0274 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)Y349.CB) [> 2.8790 = 4.7983 < 6.2377] w=0.0274 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)F348.CB) [> 4.5655 = 7.6092 < 9.8919] w=0.0274 to align # Constraint # added constraint: constraint((T0316)A290.CB, (T0316)F348.CB) [> 3.9133 = 6.5222 < 8.4788] w=0.0274 to align # Constraint # added constraint: constraint((T0316)L288.CB, (T0316)F348.CB) [> 3.9674 = 6.6123 < 8.5960] w=0.0274 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)H323.CB) [> 4.3048 = 7.1747 < 9.3271] w=0.0274 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)G255.CA) [> 4.3773 = 7.2954 < 9.4840] w=0.0272 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)Y238.CB) [> 4.5987 = 7.6645 < 9.9639] w=0.0272 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)K265.CB) [> 3.5043 = 5.8405 < 7.5927] w=0.0272 to align # Constraint # added constraint: constraint((T0316)F303.CB, (T0316)V324.CB) [> 3.6428 = 6.0714 < 7.8928] w=0.0271 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)G127.CA) [> 4.0847 = 6.8077 < 8.8501] w=0.0270 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)V263.CB) [> 4.2932 = 7.1553 < 9.3019] w=0.0267 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)A258.CB) [> 3.8988 = 6.4979 < 8.4473] w=0.0266 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)I199.CB) [> 3.6825 = 6.1375 < 7.9788] w=0.0266 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)V322.CB) [> 3.9771 = 6.6285 < 8.6170] w=0.0266 to align # Constraint # added constraint: constraint((T0316)M223.CB, (T0316)W260.CB) [> 4.2829 = 7.1381 < 9.2795] w=0.0264 to align # Constraint # added constraint: constraint((T0316)D226.CB, (T0316)G275.CA) [> 3.9588 = 6.5979 < 8.5773] w=0.0264 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)A130.CB) [> 3.5351 = 5.8918 < 7.6594] w=0.0263 to align # Constraint # added constraint: constraint((T0316)D266.CB, (T0316)F333.CB) [> 2.7053 = 4.5089 < 5.8615] w=0.0263 to align # Constraint # added constraint: constraint((T0316)L267.CB, (T0316)V331.CB) [> 4.3038 = 7.1729 < 9.3248] w=0.0263 to align # Constraint # added constraint: constraint((T0316)L267.CB, (T0316)I332.CB) [> 3.0122 = 5.0203 < 6.5264] w=0.0263 to align # Constraint # added constraint: constraint((T0316)L267.CB, (T0316)F333.CB) [> 4.4007 = 7.3345 < 9.5349] w=0.0263 to align # Constraint # added constraint: constraint((T0316)L267.CB, (T0316)Y364.CB) [> 2.6953 = 4.4921 < 5.8397] w=0.0263 to align # Constraint # added constraint: constraint((T0316)K269.CB, (T0316)N362.CB) [> 2.3118 = 3.8530 < 5.0089] w=0.0263 to align # Constraint # added constraint: constraint((T0316)K269.CB, (T0316)T329.CB) [> 4.4819 = 7.4698 < 9.7108] w=0.0263 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)Y364.CB) [> 3.6297 = 6.0495 < 7.8644] w=0.0263 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)A363.CB) [> 3.0208 = 5.0347 < 6.5451] w=0.0263 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)N362.CB) [> 3.6991 = 6.1652 < 8.0148] w=0.0263 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)V331.CB) [> 3.5540 = 5.9234 < 7.7004] w=0.0263 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)T240.CB) [> 3.0940 = 5.1566 < 6.7036] w=0.0263 to align # Constraint # added constraint: constraint((T0316)G248.CA, (T0316)A345.CB) [> 3.8946 = 6.4910 < 8.4382] w=0.0263 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)A345.CB) [> 3.1198 = 5.1997 < 6.7597] w=0.0262 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)Y123.CB) [> 4.7548 = 7.9247 < 10.3021] w=0.0261 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)N270.CB) [> 3.3301 = 5.5501 < 7.2152] w=0.0258 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)L272.CB) [> 4.1119 = 6.8531 < 8.9091] w=0.0258 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)F278.CB) [> 4.6711 = 7.7851 < 10.1207] w=0.0258 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)G277.CA) [> 3.8122 = 6.3536 < 8.2597] w=0.0258 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)Q276.CB) [> 2.7164 = 4.5273 < 5.8854] w=0.0258 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)Q276.CB) [> 4.1350 = 6.8916 < 8.9591] w=0.0258 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)Y273.CB) [> 4.1113 = 6.8522 < 8.9079] w=0.0258 to align # Constraint # added constraint: constraint((T0316)V140.CB, (T0316)L267.CB) [> 3.5818 = 5.9697 < 7.7606] w=0.0258 to align # Constraint # added constraint: constraint((T0316)F295.CB, (T0316)E353.CB) [> 4.1233 = 6.8721 < 8.9337] w=0.0258 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)A363.CB) [> 3.1619 = 5.2698 < 6.8508] w=0.0258 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)I340.CB) [> 2.3896 = 3.9826 < 5.1774] w=0.0258 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)A339.CB) [> 4.5923 = 7.6539 < 9.9501] w=0.0258 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)Q337.CB) [> 3.9241 = 6.5402 < 8.5022] w=0.0258 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)A258.CB) [> 4.3194 = 7.1990 < 9.3587] w=0.0258 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)A345.CB) [> 4.1005 = 6.8342 < 8.8845] w=0.0256 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)A363.CB) [> 4.1474 = 6.9124 < 8.9861] w=0.0252 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)S287.CB) [> 4.2090 = 7.0150 < 9.1195] w=0.0251 to align # Constraint # added constraint: constraint((T0316)K265.CB, (T0316)A339.CB) [> 3.4116 = 5.6859 < 7.3917] w=0.0251 to align # Constraint # added constraint: constraint((T0316)G138.CA, (T0316)L355.CB) [> 4.2076 = 7.0127 < 9.1165] w=0.0250 to align # Constraint # added constraint: constraint((T0316)R312.CB, (T0316)C354.CB) [> 4.4575 = 7.4292 < 9.6579] w=0.0249 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)G264.CA) [> 3.5003 = 5.8339 < 7.5840] w=0.0248 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V347.CB) [> 3.4588 = 5.7646 < 7.4940] w=0.0244 to align # Constraint # added constraint: constraint((T0316)M230.CB, (T0316)A339.CB) [> 2.6192 = 4.3654 < 5.6750] w=0.0240 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)F261.CB) [> 2.5785 = 4.2976 < 5.5868] w=0.0239 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)I249.CB) [> 3.8186 = 6.3644 < 8.2737] w=0.0238 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)V262.CB) [> 3.7103 = 6.1839 < 8.0391] w=0.0234 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)F261.CB) [> 4.2118 = 7.0197 < 9.1257] w=0.0234 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)T240.CB) [> 4.2794 = 7.1324 < 9.2721] w=0.0233 to align # Constraint # added constraint: constraint((T0316)G264.CA, (T0316)I340.CB) [> 3.9832 = 6.6386 < 8.6302] w=0.0233 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)I199.CB) [> 3.4313 = 5.7189 < 7.4346] w=0.0232 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)D195.CB) [> 3.0503 = 5.0838 < 6.6089] w=0.0232 to align # Constraint # added constraint: constraint((T0316)E353.CB, (T0316)N362.CB) [> 4.3375 = 7.2292 < 9.3980] w=0.0232 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)V263.CB) [> 3.8715 = 6.4525 < 8.3882] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)D137.CB) [> 4.5115 = 7.5192 < 9.7750] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)C200.CB) [> 3.8830 = 6.4716 < 8.4131] w=0.0232 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)Q292.CB) [> 4.0791 = 6.7985 < 8.8381] w=0.0232 to align # Constraint # added constraint: constraint((T0316)S318.CB, (T0316)A339.CB) [> 4.3191 = 7.1985 < 9.3580] w=0.0232 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)F201.CB) [> 3.4128 = 5.6880 < 7.3944] w=0.0232 to align # Constraint # added constraint: constraint((T0316)L88.CB, (T0316)L283.CB) [> 4.0645 = 6.7742 < 8.8065] w=0.0232 to align # Constraint # added constraint: constraint((T0316)T296.CB, (T0316)E306.CB) [> 3.9919 = 6.6532 < 8.6491] w=0.0232 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)E289.CB) [> 4.1954 = 6.9923 < 9.0900] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)Y238.CB) [> 3.0310 = 5.0516 < 6.5671] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)T126.CB) [> 3.6814 = 6.1356 < 7.9763] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)T126.CB) [> 3.5753 = 5.9588 < 7.7464] w=0.0232 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)F169.CB) [> 4.3415 = 7.2358 < 9.4065] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)H128.CB) [> 4.5920 = 7.6534 < 9.9494] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)H128.CB) [> 4.3590 = 7.2651 < 9.4446] w=0.0232 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)G127.CA) [> 4.5589 = 7.5982 < 9.8777] w=0.0232 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)P170.CB) [> 4.3080 = 7.1800 < 9.3341] w=0.0232 to align # Constraint # added constraint: constraint((T0316)R244.CB, (T0316)A309.CB) [> 3.5487 = 5.9146 < 7.6889] w=0.0232 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)A309.CB) [> 4.0804 = 6.8006 < 8.8408] w=0.0232 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)V322.CB) [> 3.7512 = 6.2520 < 8.1276] w=0.0232 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V322.CB) [> 3.7081 = 6.1802 < 8.0343] w=0.0232 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)T321.CB) [> 4.2656 = 7.1093 < 9.2421] w=0.0232 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)L156.CB) [> 3.6257 = 6.0428 < 7.8557] w=0.0232 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)S157.CB) [> 3.8863 = 6.4772 < 8.4204] w=0.0232 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)F261.CB) [> 4.4764 = 7.4607 < 9.6989] w=0.0232 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)P97.CB) [> 3.5074 = 5.8456 < 7.5993] w=0.0232 to align # Constraint # added constraint: constraint((T0316)T296.CB, (T0316)V320.CB) [> 3.3969 = 5.6615 < 7.3599] w=0.0231 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)T153.CB) [> 4.1183 = 6.8639 < 8.9230] w=0.0231 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)F295.CB) [> 3.7565 = 6.2609 < 8.1391] w=0.0231 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)G277.CA) [> 3.8220 = 6.3700 < 8.2811] w=0.0231 to align # Constraint # added constraint: constraint((T0316)F295.CB, (T0316)C307.CB) [> 2.6604 = 4.4340 < 5.7642] w=0.0231 to align # Constraint # added constraint: constraint((T0316)L267.CB, (T0316)M284.CB) [> 3.2768 = 5.4613 < 7.0997] w=0.0231 to align # Constraint # added constraint: constraint((T0316)D266.CB, (T0316)M284.CB) [> 4.1061 = 6.8434 < 8.8965] w=0.0231 to align # Constraint # added constraint: constraint((T0316)M222.CB, (T0316)G248.CA) [> 3.2932 = 5.4887 < 7.1354] w=0.0231 to align # Constraint # added constraint: constraint((T0316)W80.CB, (T0316)K105.CB) [> 2.9806 = 4.9677 < 6.4580] w=0.0231 to align # Constraint # added constraint: constraint((T0316)G343.CA, (T0316)G358.CA) [> 4.4282 = 7.3804 < 9.5945] w=0.0231 to align # Constraint # added constraint: constraint((T0316)T286.CB, (T0316)F295.CB) [> 3.9810 = 6.6349 < 8.6254] w=0.0231 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)T296.CB) [> 3.6298 = 6.0496 < 7.8645] w=0.0231 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)L283.CB) [> 4.1811 = 6.9685 < 9.0591] w=0.0231 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)T308.CB) [> 3.2410 = 5.4016 < 7.0222] w=0.0231 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)Q29.CB) [> 4.4553 = 7.4255 < 9.6531] w=0.0230 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)I34.CB) [> 2.8552 = 4.7587 < 6.1863] w=0.0230 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)F75.CB) [> 4.0354 = 6.7257 < 8.7435] w=0.0230 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)L156.CB) [> 3.3575 = 5.5959 < 7.2747] w=0.0230 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)F109.CB) [> 3.7286 = 6.2143 < 8.0786] w=0.0230 to align # Constraint # added constraint: constraint((T0316)G138.CA, (T0316)T153.CB) [> 3.8358 = 6.3930 < 8.3109] w=0.0230 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)K39.CB) [> 4.6588 = 7.7646 < 10.0940] w=0.0230 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)K39.CB) [> 4.0760 = 6.7933 < 8.8312] w=0.0230 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)F37.CB) [> 4.1960 = 6.9933 < 9.0913] w=0.0230 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)F37.CB) [> 4.1683 = 6.9472 < 9.0314] w=0.0230 to align # Constraint # added constraint: constraint((T0316)A258.CB, (T0316)V274.CB) [> 3.3261 = 5.5435 < 7.2066] w=0.0230 to align # Constraint # added constraint: constraint((T0316)V101.CB, (T0316)L164.CB) [> 4.5046 = 7.5077 < 9.7600] w=0.0229 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)Y123.CB) [> 4.2359 = 7.0598 < 9.1777] w=0.0229 to align # Constraint # added constraint: constraint((T0316)D3.CB, (T0316)Q29.CB) [> 4.0013 = 6.6689 < 8.6696] w=0.0229 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)V124.CB) [> 3.2464 = 5.4106 < 7.0338] w=0.0228 to align # Constraint # added constraint: constraint((T0316)P99.CB, (T0316)Y115.CB) [> 4.0001 = 6.6668 < 8.6669] w=0.0228 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)L272.CB) [> 3.3568 = 5.5947 < 7.2731] w=0.0228 to align # Constraint # added constraint: constraint((T0316)G145.CA, (T0316)I202.CB) [> 3.4798 = 5.7996 < 7.5395] w=0.0228 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)C50.CB) [> 3.9325 = 6.5542 < 8.5205] w=0.0228 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)Q276.CB) [> 3.8553 = 6.4255 < 8.3532] w=0.0228 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)M102.CB) [> 3.9986 = 6.6643 < 8.6636] w=0.0228 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)I202.CB) [> 3.8682 = 6.4470 < 8.3811] w=0.0228 to align # Constraint # added constraint: constraint((T0316)M102.CB, (T0316)T126.CB) [> 3.7208 = 6.2013 < 8.0617] w=0.0228 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)C50.CB) [> 3.0203 = 5.0339 < 6.5441] w=0.0227 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)C200.CB) [> 3.4798 = 5.7996 < 7.5395] w=0.0227 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)F201.CB) [> 3.5560 = 5.9267 < 7.7047] w=0.0227 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)F201.CB) [> 3.7393 = 6.2322 < 8.1018] w=0.0227 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)F201.CB) [> 4.0945 = 6.8242 < 8.8714] w=0.0227 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)C50.CB) [> 4.2818 = 7.1364 < 9.2773] w=0.0227 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)C50.CB) [> 2.9550 = 4.9249 < 6.4024] w=0.0227 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)T153.CB) [> 4.3511 = 7.2519 < 9.4275] w=0.0226 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)V262.CB) [> 4.1112 = 6.8520 < 8.9076] w=0.0226 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)G264.CA) [> 3.6000 = 5.9999 < 7.7999] w=0.0226 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)G255.CA) [> 3.9093 = 6.5155 < 8.4701] w=0.0225 to align # Constraint # added constraint: constraint((T0316)R244.CB, (T0316)P259.CB) [> 3.9477 = 6.5795 < 8.5534] w=0.0225 to align # Constraint # added constraint: constraint((T0316)Y115.CB, (T0316)T126.CB) [> 4.7722 = 7.9536 < 10.3397] w=0.0225 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)V263.CB) [> 3.5576 = 5.9293 < 7.7081] w=0.0225 to align # Constraint # added constraint: constraint((T0316)S291.CB, (T0316)T321.CB) [> 3.9154 = 6.5257 < 8.4835] w=0.0225 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)G343.CA) [> 3.8556 = 6.4260 < 8.3537] w=0.0224 to align # Constraint # added constraint: constraint((T0316)E28.CB, (T0316)P342.CB) [> 4.7077 = 7.8461 < 10.1999] w=0.0224 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)W260.CB) [> 3.9198 = 6.5329 < 8.4928] w=0.0220 to align # Constraint # added constraint: constraint((T0316)G254.CA, (T0316)V263.CB) [> 4.0191 = 6.6984 < 8.7080] w=0.0220 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)Y273.CB) [> 3.6702 = 6.1170 < 7.9521] w=0.0220 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)Y273.CB) [> 4.2504 = 7.0840 < 9.2093] w=0.0220 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)L236.CB) [> 4.5982 = 7.6637 < 9.9628] w=0.0218 to align # Constraint # added constraint: constraint((T0316)G145.CA, (T0316)A234.CB) [> 3.6938 = 6.1564 < 8.0033] w=0.0218 to align # Constraint # added constraint: constraint((T0316)G198.CA, (T0316)H253.CB) [> 3.7383 = 6.2305 < 8.0997] w=0.0218 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)H253.CB) [> 2.7109 = 4.5181 < 5.8735] w=0.0218 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)I360.CB) [> 2.8907 = 4.8178 < 6.2631] w=0.0218 to align # Constraint # added constraint: constraint((T0316)K265.CB, (T0316)Q337.CB) [> 4.0441 = 6.7401 < 8.7622] w=0.0218 to align # Constraint # added constraint: constraint((T0316)K265.CB, (T0316)P336.CB) [> 3.7216 = 6.2026 < 8.0634] w=0.0218 to align # Constraint # added constraint: constraint((T0316)R144.CB, (T0316)T153.CB) [> 4.4958 = 7.4930 < 9.7409] w=0.0215 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)V347.CB) [> 4.1389 = 6.8981 < 8.9676] w=0.0215 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)V347.CB) [> 3.7699 = 6.2832 < 8.1681] w=0.0215 to align # Constraint # added constraint: constraint((T0316)Q243.CB, (T0316)S318.CB) [> 4.0310 = 6.7183 < 8.7338] w=0.0214 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)V274.CB) [> 4.2823 = 7.1371 < 9.2783] w=0.0213 to align # Constraint # added constraint: constraint((T0316)H141.CB, (T0316)H294.CB) [> 4.2328 = 7.0546 < 9.1710] w=0.0212 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)F261.CB) [> 4.3875 = 7.3124 < 9.5062] w=0.0212 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)G248.CA) [> 3.7488 = 6.2480 < 8.1224] w=0.0211 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)V262.CB) [> 4.4379 = 7.3964 < 9.6154] w=0.0210 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)F261.CB) [> 3.6595 = 6.0992 < 7.9290] w=0.0209 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)G145.CA) [> 3.8051 = 6.3419 < 8.2445] w=0.0208 to align # Constraint # added constraint: constraint((T0316)E204.CB, (T0316)W260.CB) [> 4.4357 = 7.3928 < 9.6107] w=0.0207 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)F261.CB) [> 3.8700 = 6.4500 < 8.3850] w=0.0204 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)A339.CB) [> 3.3221 = 5.5369 < 7.1980] w=0.0204 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)L247.CB) [> 3.6819 = 6.1364 < 7.9774] w=0.0201 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)L247.CB) [> 3.0817 = 5.1362 < 6.6771] w=0.0201 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)Y349.CB) [> 3.5392 = 5.8987 < 7.6683] w=0.0201 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)V346.CB) [> 3.8123 = 6.3539 < 8.2600] w=0.0201 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)V347.CB) [> 3.2768 = 5.4613 < 7.0997] w=0.0201 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)V346.CB) [> 3.5892 = 5.9820 < 7.7766] w=0.0201 to align # Constraint # added constraint: constraint((T0316)G145.CA, (T0316)Y239.CB) [> 3.6862 = 6.1437 < 7.9868] w=0.0200 to align # Constraint # added constraint: constraint((T0316)G248.CA, (T0316)Q337.CB) [> 3.7859 = 6.3099 < 8.2028] w=0.0199 to align # Constraint # added constraint: constraint((T0316)L283.CB, (T0316)A339.CB) [> 4.7141 = 7.8569 < 10.2140] w=0.0199 to align # Constraint # added constraint: constraint((T0316)M284.CB, (T0316)P336.CB) [> 3.2276 = 5.3794 < 6.9932] w=0.0199 to align # Constraint # added constraint: constraint((T0316)S285.CB, (T0316)I332.CB) [> 2.8908 = 4.8179 < 6.2633] w=0.0199 to align # Constraint # added constraint: constraint((T0316)S282.CB, (T0316)A339.CB) [> 3.3164 = 5.5273 < 7.1855] w=0.0199 to align # Constraint # added constraint: constraint((T0316)H280.CB, (T0316)Q344.CB) [> 4.7186 = 7.8643 < 10.2236] w=0.0199 to align # Constraint # added constraint: constraint((T0316)H280.CB, (T0316)T341.CB) [> 2.8983 = 4.8305 < 6.2797] w=0.0199 to align # Constraint # added constraint: constraint((T0316)H280.CB, (T0316)I340.CB) [> 3.3009 = 5.5016 < 7.1520] w=0.0199 to align # Constraint # added constraint: constraint((T0316)H280.CB, (T0316)A339.CB) [> 3.0952 = 5.1587 < 6.7063] w=0.0199 to align # Constraint # added constraint: constraint((T0316)T308.CB, (T0316)S318.CB) [> 4.6096 = 7.6827 < 9.9875] w=0.0199 to align # Constraint # added constraint: constraint((T0316)S291.CB, (T0316)G358.CA) [> 3.6353 = 6.0589 < 7.8766] w=0.0199 to align # Constraint # added constraint: constraint((T0316)S291.CB, (T0316)G357.CA) [> 3.3783 = 5.6305 < 7.3197] w=0.0199 to align # Constraint # added constraint: constraint((T0316)A290.CB, (T0316)E327.CB) [> 3.4321 = 5.7202 < 7.4363] w=0.0199 to align # Constraint # added constraint: constraint((T0316)L24.CB, (T0316)V347.CB) [> 4.7444 = 7.9073 < 10.2795] w=0.0199 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)A339.CB) [> 4.3463 = 7.2438 < 9.4169] w=0.0199 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)V346.CB) [> 3.6604 = 6.1007 < 7.9310] w=0.0198 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)A339.CB) [> 3.2710 = 5.4516 < 7.0871] w=0.0194 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)G248.CA) [> 3.3162 = 5.5270 < 7.1851] w=0.0193 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)A339.CB) [> 3.7822 = 6.3036 < 8.1947] w=0.0191 to align # Constraint # added constraint: constraint((T0316)G138.CA, (T0316)E204.CB) [> 3.4950 = 5.8250 < 7.5724] w=0.0190 to align # Constraint # added constraint: constraint((T0316)T329.CB, (T0316)A339.CB) [> 4.3001 = 7.1668 < 9.3168] w=0.0187 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)K325.CB) [> 3.1186 = 5.1977 < 6.7570] w=0.0187 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)G343.CA) [> 4.1085 = 6.8475 < 8.9018] w=0.0187 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)H233.CB) [> 3.7293 = 6.2155 < 8.0802] w=0.0186 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)Y239.CB) [> 3.8847 = 6.4746 < 8.4170] w=0.0185 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)Y239.CB) [> 3.1241 = 5.2069 < 6.7689] w=0.0185 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)Y238.CB) [> 3.5589 = 5.9316 < 7.7110] w=0.0184 to align # Constraint # added constraint: constraint((T0316)F169.CB, (T0316)F201.CB) [> 3.6225 = 6.0375 < 7.8488] w=0.0184 to align # Constraint # added constraint: constraint((T0316)S268.CB, (T0316)Q337.CB) [> 2.7667 = 4.6112 < 5.9945] w=0.0180 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)H128.CB) [> 2.9936 = 4.9893 < 6.4861] w=0.0179 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)K265.CB) [> 3.7061 = 6.1768 < 8.0298] w=0.0171 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)V262.CB) [> 3.9458 = 6.5764 < 8.5493] w=0.0164 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)F261.CB) [> 3.6882 = 6.1469 < 7.9910] w=0.0164 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)Y239.CB) [> 3.2472 = 5.4120 < 7.0356] w=0.0157 to align # Constraint # added constraint: constraint((T0316)E352.CB, (T0316)A363.CB) [> 4.2411 = 7.0685 < 9.1891] w=0.0155 to align # Constraint # added constraint: constraint((T0316)K325.CB, (T0316)V346.CB) [> 3.8622 = 6.4370 < 8.3682] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V320.CB, (T0316)V347.CB) [> 4.5192 = 7.5320 < 9.7916] w=0.0155 to align # Constraint # added constraint: constraint((T0316)T321.CB, (T0316)V347.CB) [> 4.7349 = 7.8915 < 10.2589] w=0.0155 to align # Constraint # added constraint: constraint((T0316)T321.CB, (T0316)G351.CA) [> 4.6788 = 7.7980 < 10.1373] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V322.CB, (T0316)A345.CB) [> 3.2557 = 5.4262 < 7.0540] w=0.0155 to align # Constraint # added constraint: constraint((T0316)H323.CB, (T0316)A345.CB) [> 4.6916 = 7.8194 < 10.1652] w=0.0155 to align # Constraint # added constraint: constraint((T0316)H323.CB, (T0316)V346.CB) [> 2.4363 = 4.0606 < 5.2787] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V324.CB, (T0316)P342.CB) [> 3.9934 = 6.6556 < 8.6523] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V324.CB, (T0316)V346.CB) [> 4.0093 = 6.6821 < 8.6868] w=0.0155 to align # Constraint # added constraint: constraint((T0316)I249.CB, (T0316)H323.CB) [> 3.6827 = 6.1378 < 7.9791] w=0.0155 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)S282.CB) [> 4.3028 = 7.1714 < 9.3228] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)F155.CB) [> 3.7353 = 6.2255 < 8.0932] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)L156.CB) [> 3.6602 = 6.1003 < 7.9304] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)G127.CA) [> 3.6947 = 6.1579 < 8.0052] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)G127.CA) [> 3.7264 = 6.2107 < 8.0739] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)D135.CB) [> 4.2702 = 7.1170 < 9.2521] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)D135.CB) [> 4.5862 = 7.6436 < 9.9367] w=0.0155 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)C354.CB) [> 3.6305 = 6.0509 < 7.8662] w=0.0155 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)F155.CB) [> 2.9759 = 4.9599 < 6.4479] w=0.0155 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)H294.CB) [> 2.1495 = 3.5825 < 4.6572] w=0.0155 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)P300.CB) [> 2.9693 = 4.9488 < 6.4334] w=0.0155 to align # Constraint # added constraint: constraint((T0316)A234.CB, (T0316)G326.CA) [> 3.1428 = 5.2381 < 6.8095] w=0.0155 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)W260.CB) [> 4.6171 = 7.6952 < 10.0038] w=0.0155 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)M284.CB) [> 3.1920 = 5.3200 < 6.9160] w=0.0155 to align # Constraint # added constraint: constraint((T0316)M102.CB, (T0316)I202.CB) [> 3.9201 = 6.5336 < 8.4936] w=0.0155 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)W260.CB) [> 4.5183 = 7.5305 < 9.7897] w=0.0155 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)F261.CB) [> 3.6408 = 6.0679 < 7.8883] w=0.0155 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)V262.CB) [> 3.5673 = 5.9454 < 7.7291] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)W260.CB) [> 2.5570 = 4.2617 < 5.5402] w=0.0155 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)V262.CB) [> 3.6690 = 6.1150 < 7.9495] w=0.0155 to align # Constraint # added constraint: constraint((T0316)K265.CB, (T0316)M284.CB) [> 3.1241 = 5.2068 < 6.7688] w=0.0155 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)F278.CB) [> 3.9432 = 6.5720 < 8.5436] w=0.0155 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)F278.CB) [> 4.5489 = 7.5814 < 9.8559] w=0.0155 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)F278.CB) [> 2.7430 = 4.5717 < 5.9432] w=0.0155 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)Y115.CB) [> 3.2855 = 5.4758 < 7.1185] w=0.0155 to align # Constraint # added constraint: constraint((T0316)Y115.CB, (T0316)V124.CB) [> 4.5926 = 7.6543 < 9.9507] w=0.0155 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)M102.CB) [> 3.6130 = 6.0216 < 7.8281] w=0.0155 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)H323.CB) [> 3.8913 = 6.4855 < 8.4312] w=0.0154 to align # Constraint # added constraint: constraint((T0316)G242.CA, (T0316)F311.CB) [> 4.7525 = 7.9209 < 10.2971] w=0.0154 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)D135.CB) [> 4.5008 = 7.5013 < 9.7517] w=0.0154 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)D135.CB) [> 4.4096 = 7.3493 < 9.5541] w=0.0154 to align # Constraint # added constraint: constraint((T0316)A339.CB, (T0316)E353.CB) [> 3.7169 = 6.1947 < 8.0532] w=0.0154 to align # Constraint # added constraint: constraint((T0316)A258.CB, (T0316)A290.CB) [> 3.7261 = 6.2101 < 8.0731] w=0.0154 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)D135.CB) [> 3.7388 = 6.2314 < 8.1008] w=0.0154 to align # Constraint # added constraint: constraint((T0316)D266.CB, (T0316)G343.CA) [> 3.4008 = 5.6680 < 7.3684] w=0.0154 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)F311.CB) [> 4.1534 = 6.9224 < 8.9991] w=0.0154 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)E76.CB) [> 4.5979 = 7.6633 < 9.9622] w=0.0154 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)F311.CB) [> 3.0951 = 5.1586 < 6.7061] w=0.0154 to align # Constraint # added constraint: constraint((T0316)L247.CB, (T0316)P342.CB) [> 3.5811 = 5.9685 < 7.7591] w=0.0153 to align # Constraint # added constraint: constraint((T0316)H253.CB, (T0316)E352.CB) [> 4.5965 = 7.6609 < 9.9592] w=0.0153 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)G203.CA) [> 4.4790 = 7.4649 < 9.7044] w=0.0153 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)F201.CB) [> 3.0800 = 5.1334 < 6.6734] w=0.0153 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)F109.CB) [> 4.4533 = 7.4222 < 9.6488] w=0.0153 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)V73.CB) [> 3.9706 = 6.6176 < 8.6029] w=0.0153 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)I36.CB) [> 4.0223 = 6.7038 < 8.7150] w=0.0153 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)T153.CB) [> 3.8328 = 6.3880 < 8.3044] w=0.0153 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)D135.CB) [> 3.0498 = 5.0829 < 6.6078] w=0.0152 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)A339.CB) [> 3.1533 = 5.2555 < 6.8321] w=0.0152 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)T341.CB) [> 4.2888 = 7.1480 < 9.2924] w=0.0152 to align # Constraint # added constraint: constraint((T0316)G246.CA, (T0316)A339.CB) [> 3.2263 = 5.3772 < 6.9904] w=0.0152 to align # Constraint # added constraint: constraint((T0316)G343.CA, (T0316)G356.CA) [> 4.7322 = 7.8870 < 10.2531] w=0.0152 to align # Constraint # added constraint: constraint((T0316)D266.CB, (T0316)Q276.CB) [> 4.2771 = 7.1285 < 9.2670] w=0.0152 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)H253.CB) [> 3.3066 = 5.5111 < 7.1644] w=0.0152 to align # Constraint # added constraint: constraint((T0316)T321.CB, (T0316)E335.CB) [> 4.6125 = 7.6875 < 9.9937] w=0.0152 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)Q276.CB) [> 3.6463 = 6.0772 < 7.9004] w=0.0152 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)F201.CB) [> 3.4069 = 5.6781 < 7.3816] w=0.0152 to align # Constraint # added constraint: constraint((T0316)G245.CA, (T0316)V346.CB) [> 3.6056 = 6.0094 < 7.8123] w=0.0152 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)I202.CB) [> 4.1680 = 6.9466 < 9.0306] w=0.0152 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)L283.CB) [> 3.3754 = 5.6257 < 7.3134] w=0.0151 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)I202.CB) [> 3.2226 = 5.3710 < 6.9823] w=0.0151 to align # Constraint # added constraint: constraint((T0316)V73.CB, (T0316)G127.CA) [> 3.9836 = 6.6393 < 8.6311] w=0.0150 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)C200.CB) [> 3.9272 = 6.5454 < 8.5091] w=0.0150 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)C200.CB) [> 3.3973 = 5.6622 < 7.3608] w=0.0150 to align # Constraint # added constraint: constraint((T0316)Y115.CB, (T0316)H128.CB) [> 4.7633 = 7.9388 < 10.3205] w=0.0150 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)L283.CB) [> 4.2042 = 7.0070 < 9.1090] w=0.0150 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)Q337.CB) [> 4.7573 = 7.9288 < 10.3074] w=0.0149 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)V346.CB) [> 3.7037 = 6.1729 < 8.0248] w=0.0147 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)A339.CB) [> 3.7769 = 6.2948 < 8.1832] w=0.0147 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)V274.CB) [> 4.7207 = 7.8678 < 10.2281] w=0.0146 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V274.CB) [> 4.5653 = 7.6088 < 9.8914] w=0.0146 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)L272.CB) [> 4.5017 = 7.5028 < 9.7537] w=0.0144 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)Q276.CB) [> 2.7041 = 4.5069 < 5.8590] w=0.0144 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)V274.CB) [> 3.0671 = 5.1118 < 6.6453] w=0.0144 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)V274.CB) [> 3.8427 = 6.4044 < 8.3258] w=0.0144 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)Y273.CB) [> 3.0809 = 5.1348 < 6.6752] w=0.0144 to align # Constraint # added constraint: constraint((T0316)M237.CB, (T0316)Q276.CB) [> 3.3774 = 5.6290 < 7.3177] w=0.0144 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)G127.CA) [> 3.0160 = 5.0267 < 6.5346] w=0.0138 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)H128.CB) [> 4.4631 = 7.4385 < 9.6701] w=0.0138 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)A125.CB) [> 3.4016 = 5.6693 < 7.3700] w=0.0138 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)G127.CA) [> 3.9961 = 6.6602 < 8.6583] w=0.0138 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)T126.CB) [> 4.3466 = 7.2443 < 9.4177] w=0.0138 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)G127.CA) [> 3.3544 = 5.5907 < 7.2679] w=0.0138 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)A125.CB) [> 4.1781 = 6.9634 < 9.0525] w=0.0138 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)T126.CB) [> 4.4576 = 7.4293 < 9.6581] w=0.0138 to align # Constraint # added constraint: constraint((T0316)G35.CA, (T0316)V124.CB) [> 3.9357 = 6.5595 < 8.5274] w=0.0138 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)V263.CB) [> 4.2145 = 7.0241 < 9.1314] w=0.0136 to align # Constraint # added constraint: constraint((T0316)P342.CB, (T0316)L359.CB) [> 3.4473 = 5.7456 < 7.4692] w=0.0134 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)A345.CB) [> 4.5737 = 7.6229 < 9.9097] w=0.0134 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)G356.CA) [> 3.6762 = 6.1271 < 7.9652] w=0.0133 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)G357.CA) [> 3.5179 = 5.8631 < 7.6221] w=0.0133 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)Q337.CB) [> 2.7464 = 4.5774 < 5.9506] w=0.0124 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)Q337.CB) [> 3.6504 = 6.0839 < 7.9091] w=0.0124 to align # Constraint # added constraint: constraint((T0316)S157.CB, (T0316)Y238.CB) [> 3.0917 = 5.1529 < 6.6988] w=0.0124 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)V347.CB) [> 4.3910 = 7.3183 < 9.5138] w=0.0123 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)K269.CB) [> 2.9861 = 4.9769 < 6.4700] w=0.0122 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)Y273.CB) [> 3.7570 = 6.2616 < 8.1401] w=0.0122 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)N270.CB) [> 4.3548 = 7.2580 < 9.4354] w=0.0122 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)K269.CB) [> 3.5505 = 5.9175 < 7.6928] w=0.0122 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)F278.CB) [> 4.2779 = 7.1298 < 9.2687] w=0.0122 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)A339.CB) [> 4.5308 = 7.5513 < 9.8167] w=0.0121 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)G127.CA) [> 4.5869 = 7.6448 < 9.9382] w=0.0117 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)K269.CB) [> 3.6415 = 6.0691 < 7.8899] w=0.0112 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)H128.CB) [> 3.4323 = 5.7206 < 7.4367] w=0.0110 to align # Constraint # added constraint: constraint((T0316)K269.CB, (T0316)Q337.CB) [> 4.6759 = 7.7932 < 10.1312] w=0.0110 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)Y238.CB) [> 3.0771 = 5.1284 < 6.6670] w=0.0110 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)T240.CB) [> 4.1081 = 6.8468 < 8.9008] w=0.0110 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)V73.CB) [> 3.7201 = 6.2002 < 8.0602] w=0.0104 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)V124.CB) [> 4.0908 = 6.8180 < 8.8634] w=0.0097 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)D135.CB) [> 4.6078 = 7.6796 < 9.9835] w=0.0096 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)A345.CB) [> 3.1171 = 5.1952 < 6.7537] w=0.0087 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)V346.CB) [> 3.7058 = 6.1763 < 8.0292] w=0.0087 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)V347.CB) [> 3.5539 = 5.9231 < 7.7001] w=0.0087 to align # Constraint # added constraint: constraint((T0316)F37.CB, (T0316)T126.CB) [> 4.7679 = 7.9464 < 10.3304] w=0.0078 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)A125.CB) [> 4.7852 = 7.9753 < 10.3679] w=0.0078 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)A345.CB) [> 4.0086 = 6.6811 < 8.6854] w=0.0077 to align # Constraint # added constraint: constraint((T0316)F278.CB, (T0316)F311.CB) [> 4.4015 = 7.3358 < 9.5366] w=0.0077 to align # Constraint # added constraint: constraint((T0316)A345.CB, (T0316)Y372.CB) [> 4.5286 = 7.5477 < 9.8120] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V347.CB, (T0316)Y372.CB) [> 3.1573 = 5.2622 < 6.8408] w=0.0077 to align # Constraint # added constraint: constraint((T0316)C354.CB, (T0316)Y372.CB) [> 4.4019 = 7.3366 < 9.5376] w=0.0077 to align # Constraint # added constraint: constraint((T0316)L355.CB, (T0316)Y372.CB) [> 2.9532 = 4.9221 < 6.3987] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G356.CA, (T0316)Y372.CB) [> 4.2110 = 7.0183 < 9.1238] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G357.CA, (T0316)Y372.CB) [> 3.2724 = 5.4540 < 7.0903] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G357.CA, (T0316)I373.CB) [> 4.6194 = 7.6990 < 10.0087] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V324.CB, (T0316)V369.CB) [> 4.4419 = 7.4032 < 9.6242] w=0.0077 to align # Constraint # added constraint: constraint((T0316)K310.CB, (T0316)V369.CB) [> 3.9219 = 6.5366 < 8.4975] w=0.0077 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)R365.CB) [> 3.6013 = 6.0022 < 7.8029] w=0.0077 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)C370.CB) [> 2.9465 = 4.9109 < 6.3841] w=0.0077 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)Q371.CB) [> 3.8238 = 6.3729 < 8.2848] w=0.0077 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)C370.CB) [> 3.7283 = 6.2139 < 8.0780] w=0.0077 to align # Constraint # added constraint: constraint((T0316)E306.CB, (T0316)I373.CB) [> 3.5483 = 5.9139 < 7.6881] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)I199.CB) [> 2.5648 = 4.2746 < 5.5570] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)F311.CB) [> 2.4604 = 4.1007 < 5.3309] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)I199.CB) [> 4.7386 = 7.8977 < 10.2670] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)C200.CB) [> 3.6263 = 6.0439 < 7.8570] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)F201.CB) [> 3.4970 = 5.8284 < 7.5769] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)F311.CB) [> 4.5932 = 7.6553 < 9.9519] w=0.0077 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)D195.CB) [> 4.6767 = 7.7946 < 10.1329] w=0.0077 to align # Constraint # added constraint: constraint((T0316)K39.CB, (T0316)F109.CB) [> 4.3983 = 7.3305 < 9.5297] w=0.0077 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)V124.CB) [> 4.7066 = 7.8443 < 10.1976] w=0.0077 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)G127.CA) [> 2.5812 = 4.3020 < 5.5925] w=0.0077 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)H128.CB) [> 4.5596 = 7.5993 < 9.8791] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)H128.CB) [> 3.7050 = 6.1751 < 8.0276] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V9.CB, (T0316)A130.CB) [> 3.3611 = 5.6018 < 7.2823] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)H128.CB) [> 3.9753 = 6.6255 < 8.6132] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V10.CB, (T0316)A130.CB) [> 3.9082 = 6.5136 < 8.4677] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V11.CB, (T0316)A130.CB) [> 2.6093 = 4.3488 < 5.6535] w=0.0077 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)Y123.CB) [> 4.0331 = 6.7217 < 8.7383] w=0.0077 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)F311.CB) [> 3.6454 = 6.0756 < 7.8983] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)F311.CB) [> 3.1277 = 5.2128 < 6.7766] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)F311.CB) [> 4.0013 = 6.6688 < 8.6694] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V225.CB, (T0316)T321.CB) [> 4.4199 = 7.3665 < 9.5764] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)L272.CB) [> 4.5737 = 7.6229 < 9.9098] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)V263.CB) [> 4.0075 = 6.6792 < 8.6830] w=0.0077 to align # Constraint # added constraint: constraint((T0316)T296.CB, (T0316)G351.CA) [> 2.8890 = 4.8150 < 6.2595] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)V347.CB) [> 3.4889 = 5.8148 < 7.5592] w=0.0077 to align # Constraint # added constraint: constraint((T0316)R8.CB, (T0316)A125.CB) [> 3.9416 = 6.5694 < 8.5402] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Q29.CB, (T0316)Y123.CB) [> 4.6236 = 7.7060 < 10.0177] w=0.0077 to align # Constraint # added constraint: constraint((T0316)I34.CB, (T0316)A125.CB) [> 4.5121 = 7.5202 < 9.7762] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G15.CA, (T0316)Y238.CB) [> 4.7111 = 7.8518 < 10.2074] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)I202.CB) [> 3.3165 = 5.5275 < 7.1858] w=0.0077 to align # Constraint # added constraint: constraint((T0316)L288.CB, (T0316)T321.CB) [> 4.5856 = 7.6427 < 9.9355] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G12.CA, (T0316)F109.CB) [> 4.7523 = 7.9206 < 10.2967] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)H128.CB) [> 4.7874 = 7.9790 < 10.3727] w=0.0077 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)I34.CB) [> 4.4922 = 7.4870 < 9.7331] w=0.0077 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)F311.CB) [> 4.5717 = 7.6194 < 9.9053] w=0.0077 to align # Constraint # added constraint: constraint((T0316)N270.CB, (T0316)V347.CB) [> 4.5477 = 7.5796 < 9.8534] w=0.0077 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)F311.CB) [> 4.4931 = 7.4884 < 9.7350] w=0.0077 to align # Constraint # added constraint: constraint((T0316)L272.CB, (T0316)A345.CB) [> 4.3053 = 7.1755 < 9.3282] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)F311.CB) [> 4.0195 = 6.6992 < 8.7089] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)A339.CB) [> 3.4544 = 5.7573 < 7.4845] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)A345.CB) [> 3.0117 = 5.0196 < 6.5254] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y273.CB, (T0316)V346.CB) [> 4.7005 = 7.8342 < 10.1845] w=0.0077 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)A125.CB) [> 4.2235 = 7.0392 < 9.1509] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Q337.CB, (T0316)V347.CB) [> 4.4432 = 7.4054 < 9.6270] w=0.0077 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)I199.CB) [> 4.6289 = 7.7148 < 10.0293] w=0.0077 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)F109.CB) [> 4.6859 = 7.8097 < 10.1527] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Q337.CB, (T0316)G356.CA) [> 4.0842 = 6.8070 < 8.8491] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Q337.CB, (T0316)G357.CA) [> 3.5508 = 5.9179 < 7.6933] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Q337.CB, (T0316)G358.CA) [> 3.9554 = 6.5923 < 8.5700] w=0.0077 to align # Constraint # added constraint: constraint((T0316)I36.CB, (T0316)F109.CB) [> 4.5902 = 7.6504 < 9.9455] w=0.0077 to align # Constraint # added constraint: constraint((T0316)F201.CB, (T0316)N270.CB) [> 4.7321 = 7.8868 < 10.2529] w=0.0077 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)L272.CB) [> 3.4279 = 5.7132 < 7.4271] w=0.0077 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)Y273.CB) [> 4.0050 = 6.6751 < 8.6776] w=0.0077 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)V274.CB) [> 2.9794 = 4.9656 < 6.4553] w=0.0077 to align # Constraint # added constraint: constraint((T0316)S14.CB, (T0316)E76.CB) [> 3.0784 = 5.1307 < 6.6700] w=0.0077 to align # Constraint # added constraint: constraint((T0316)Y123.CB, (T0316)D135.CB) [> 4.1480 = 6.9133 < 8.9873] w=0.0077 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)I199.CB) [> 4.3794 = 7.2989 < 9.4886] w=0.0076 to align # Constraint # added constraint: constraint((T0316)I360.CB, (T0316)C370.CB) [> 3.1676 = 5.2793 < 6.8632] w=0.0076 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)A345.CB) [> 4.1804 = 6.9673 < 9.0575] w=0.0076 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)G357.CA) [> 3.4489 = 5.7481 < 7.4726] w=0.0076 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)G357.CA) [> 4.2042 = 7.0070 < 9.1091] w=0.0076 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)V346.CB) [> 4.3406 = 7.2343 < 9.4046] w=0.0076 to align # Constraint # added constraint: constraint((T0316)F109.CB, (T0316)C200.CB) [> 2.9378 = 4.8963 < 6.3652] w=0.0076 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)E353.CB) [> 4.7470 = 7.9116 < 10.2851] w=0.0076 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)G356.CA) [> 4.0013 = 6.6689 < 8.6695] w=0.0076 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)F201.CB) [> 4.0216 = 6.7027 < 8.7135] w=0.0076 to align # Constraint # added constraint: constraint((T0316)M38.CB, (T0316)A130.CB) [> 4.5262 = 7.5437 < 9.8067] w=0.0076 to align # Constraint # added constraint: constraint((T0316)M13.CB, (T0316)A130.CB) [> 4.6844 = 7.8074 < 10.1496] w=0.0076 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)H128.CB) [> 4.4070 = 7.3450 < 9.5486] w=0.0076 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)A130.CB) [> 3.6214 = 6.0357 < 7.8464] w=0.0076 to align # Constraint # added constraint: constraint((T0316)F75.CB, (T0316)D135.CB) [> 4.1068 = 6.8446 < 8.8980] w=0.0076 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)A130.CB) [> 3.3564 = 5.5941 < 7.2723] w=0.0076 to align # Constraint # added constraint: constraint((T0316)E76.CB, (T0316)D135.CB) [> 3.2561 = 5.4268 < 7.0549] w=0.0076 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)W260.CB) [> 3.9303 = 6.5505 < 8.5156] w=0.0076 to align # Constraint # added constraint: constraint((T0316)A130.CB, (T0316)T240.CB) [> 4.6499 = 7.7498 < 10.0747] w=0.0076 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)C200.CB) [> 4.4018 = 7.3364 < 9.5373] w=0.0076 to align # Constraint # added constraint: constraint((T0316)V17.CB, (T0316)I202.CB) [> 4.4609 = 7.4348 < 9.6653] w=0.0076 to align # Constraint # added constraint: constraint((T0316)V21.CB, (T0316)I199.CB) [> 4.1654 = 6.9424 < 9.0251] w=0.0076 to align # Constraint # added constraint: constraint((T0316)I202.CB, (T0316)Y239.CB) [> 4.4035 = 7.3392 < 9.5410] w=0.0076 to align # Constraint # added constraint: constraint((T0316)G203.CA, (T0316)Y239.CB) [> 3.7498 = 6.2497 < 8.1247] w=0.0076 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)C200.CB) [> 2.7647 = 4.6078 < 5.9901] w=0.0075 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)C200.CB) [> 2.6932 = 4.4887 < 5.8354] w=0.0075 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)I199.CB) [> 4.2471 = 7.0786 < 9.2022] w=0.0075 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)I199.CB) [> 3.0818 = 5.1363 < 6.6772] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)I199.CB) [> 4.5123 = 7.5205 < 9.7766] w=0.0075 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)I199.CB) [> 4.1123 = 6.8539 < 8.9101] w=0.0075 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)G203.CA) [> 3.7184 = 6.1973 < 8.0565] w=0.0075 to align # Constraint # added constraint: constraint((T0316)G127.CA, (T0316)G203.CA) [> 3.5306 = 5.8843 < 7.6496] w=0.0075 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)G203.CA) [> 3.1369 = 5.2282 < 6.7967] w=0.0075 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)C200.CB) [> 3.0000 = 5.0001 < 6.5001] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)F201.CB) [> 3.9406 = 6.5676 < 8.5379] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V124.CB, (T0316)C200.CB) [> 4.7795 = 7.9658 < 10.3555] w=0.0075 to align # Constraint # added constraint: constraint((T0316)I332.CB, (T0316)C370.CB) [> 3.2810 = 5.4684 < 7.1089] w=0.0075 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)A339.CB) [> 4.7942 = 7.9903 < 10.3874] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V262.CB, (T0316)G358.CA) [> 3.5797 = 5.9662 < 7.7560] w=0.0075 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)G358.CA) [> 3.1063 = 5.1771 < 6.7303] w=0.0075 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)Q337.CB) [> 4.4033 = 7.3388 < 9.5405] w=0.0075 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)Q337.CB) [> 3.9773 = 6.6288 < 8.6175] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)G356.CA) [> 3.5055 = 5.8426 < 7.5954] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)G357.CA) [> 3.4636 = 5.7727 < 7.5046] w=0.0075 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)G358.CA) [> 2.6989 = 4.4981 < 5.8475] w=0.0075 to align # Constraint # added constraint: constraint((T0316)C200.CB, (T0316)A339.CB) [> 2.4107 = 4.0178 < 5.2232] w=0.0071 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)N270.CB) [> 4.5452 = 7.5753 < 9.8479] w=0.0070 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)L272.CB) [> 3.1384 = 5.2307 < 6.8000] w=0.0070 to align # Constraint # added constraint: constraint((T0316)H128.CB, (T0316)Y273.CB) [> 4.6393 = 7.7321 < 10.0517] w=0.0070 to align # Constraint # added constraint: constraint((T0316)V274.CB, (T0316)G358.CA) [> 2.6289 = 4.3814 < 5.6959] w=0.0070 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)W260.CB) [> 4.5135 = 7.5225 < 9.7793] w=0.0057 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)G356.CA) [> 3.8070 = 6.3450 < 8.2485] w=0.0057 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)G357.CA) [> 3.5493 = 5.9155 < 7.6902] w=0.0057 to align # Constraint # added constraint: constraint((T0316)F311.CB, (T0316)G358.CA) [> 3.1159 = 5.1931 < 6.7510] w=0.0057 to align # Constraint # added constraint: constraint((T0316)T240.CB, (T0316)G358.CA) [> 2.9869 = 4.9782 < 6.4717] w=0.0057 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)G358.CA) [> 3.5036 = 5.8393 < 7.5910] w=0.0057 to align # Constraint # added constraint: constraint((T0316)D135.CB, (T0316)T240.CB) [> 4.3558 = 7.2596 < 9.4375] w=0.0047 to align # Constraint # added constraint: constraint((T0316)Y238.CB, (T0316)A339.CB) [> 3.1669 = 5.2781 < 6.8616] w=0.0047 to align # Constraint # added constraint: constraint((T0316)Y239.CB, (T0316)Q337.CB) [> 3.7539 = 6.2566 < 8.1335] w=0.0047 to align # Constraint # added constraint: constraint((T0316)I199.CB, (T0316)A339.CB) [> 4.6764 = 7.7940 < 10.1322] w=0.0045 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)V347.CB) [> 4.4807 = 7.4678 < 9.7081] w=0.0041 to align # Constraint # added constraint: constraint((T0316)T126.CB, (T0316)L272.CB) [> 4.0630 = 6.7716 < 8.8031] w=0.0041 to align # Constraint # added constraint: constraint((T0316)A125.CB, (T0316)A345.CB) [> 4.6044 = 7.6741 < 9.9763] w=0.0041 to align # Constraint # added constraint: constraint((T0316)W260.CB, (T0316)R365.CB) [> 3.3004 = 5.5006 < 7.1508] w=0.0034 to align # Constraint # added constraint: constraint((T0316)V263.CB, (T0316)C370.CB) [> 2.6653 = 4.4422 < 5.7749] w=0.0034 to align # Constraint # added constraint: constraint((T0316)F261.CB, (T0316)C370.CB) [> 4.4460 = 7.4100 < 9.6330] w=0.0034 to align # Constraint # added constraint: constraint((T0316)Y115.CB, (T0316)D135.CB) [> 4.0444 = 6.7407 < 8.7628] w=0.0027 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0316/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0316/decoys/ # ReadConformPDB reading from PDB file chimera1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file make-chimera.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 353 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 345 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 328 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 345 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 346 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 354 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 353 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 738, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 740, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 742, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 744, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 754, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 756, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 758, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 760, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 922, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 924, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1154, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1156, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1158, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1160, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1230, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1232, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1234, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1236, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1242, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1244, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1246, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1248, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1254, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1256, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1258, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1260, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1342, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1344, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1346, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 1348, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 738, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 740, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 742, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 744, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 754, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 756, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 758, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 760, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 922, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 924, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1154, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1156, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1158, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1160, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1230, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1232, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1234, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1236, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1242, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1244, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1246, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1248, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1254, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1256, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1258, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1260, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1342, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1344, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1346, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 1348, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 346 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 330 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 338 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 336 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 329 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 339 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 339 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 345 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 366 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 352, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 354, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 356, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 606, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 608, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 610, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 612, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 622, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 624, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 626, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 628, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 734, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 736, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 738, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 740, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 934, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 936, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 938, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 940, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 1042, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 1044, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 1046, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 1048, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0316)G172.O and (T0316)H173.N only 0.000 apart, marking (T0316)H173.N as missing WARNING: atoms too close: (T0316)H280.O and (T0316)D281.N only 0.000 apart, marking (T0316)D281.N as missing WARNING: atoms too close: (T0316)Y364.O and (T0316)R365.N only 0.000 apart, marking (T0316)R365.N as missing # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0316)I202.O and (T0316)G203.N only 0.000 apart, marking (T0316)G203.N as missing WARNING: atoms too close: (T0316)G264.O and (T0316)K265.N only 0.000 apart, marking (T0316)K265.N as missing # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0316)L143.O and (T0316)R144.N only 0.000 apart, marking (T0316)R144.N as missing WARNING: atoms too close: (T0316)R312.O and (T0316)Y313.N only 0.000 apart, marking (T0316)Y313.N as missing # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0316)C50.O and (T0316)T51.N only 0.000 apart, marking (T0316)T51.N as missing WARNING: atoms too close: (T0316)A186.O and (T0316)G187.N only 0.000 apart, marking (T0316)G187.N as missing WARNING: atoms too close: (T0316)T304.O and (T0316)L305.N only 0.000 apart, marking (T0316)L305.N as missing WARNING: atoms too close: (T0316)Y349.O and (T0316)D350.N only 0.000 apart, marking (T0316)D350.N as missing # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0316 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.5945 model score 0.5665 model score 0.2719 model score 0.2693 model score 0.2753 model score 0.4276 model score 0.3473 model score 0.4309 model score 0.3148 model score 0.2746 model score 0.2781 model score 0.2781 model score 0.6062 model score 0.6159 model score 0.6222 model score 1.2728 model score 0.5096 model score 0.2726 model score 0.2844 model score 0.7648 model score 2.1037 model score 2.4763 model score 1.5511 model score 1.5477 model score 1.6480 model score 1.4268 model score 1.4805 model score 0.4712 model score 1.8787 model score 0.8036 model score 1.1716 model score 0.2790 model score 0.3216 model score 0.1676 model score 0.2333 model score 0.4939 model score 0.6484 model score 0.2685 model score 0.4527 model score 0.2218 model score 1.6766 model score 1.9849 model score 1.2627 model score 1.2680 model score 1.2624 model score 1.2662 model score 1.2622 model score 0.3530 model score 0.2880 model score 0.2328 model score 0.3383 model score 1.1429 model score 0.2406 model score 0.3676 model score 0.2328 model score 0.2186 model score 0.7887 model score 0.7648 model score 0.9263 model score 0.2726 model score 2.0413 model score 1.0300 model score 1.2634 model score 1.2780 model score 1.2631 model score 1.2737 model score 1.2655 model score 1.2634 model score 1.2780 model score 1.2631 model score 1.2731 model score 1.2878 model score 2.6038 model score 2.6850 model score 2.6785 model score 2.6289 model score 2.6424 model score 0.4050 model score 0.5333 model score 0.9516 model score 1.2035 model score 0.7576 model score 1.2595 model score 1.2625 model score 1.2754 model score 1.2789 model score 1.2739 model score 0.2186 model score 0.5754 model score 0.7122 model score 0.9519 model score 1.1140 model score 0.2362 model score 0.4370 model score 0.3000 model score 0.2231 model score 0.3713 model score 0.1529 model score 0.1275 model score 0.1275 model score 1.4275 model score 1.4990 model score 1.4062 model score 1.9029 model score 0.9700 model score 1.2183 model score 1.5271 model score 0.4457 model score 1.6150 model score 0.6347 model score 0.3166 model score 0.2158 model score 0.4444 model score 0.4777 model score 2.0103 model score 0.2883 model score 0.1911 model score 0.1079 model score 0.2520 model score 0.2831 model score 0.4435 model score 1.4122 model score 1.4813 model score 1.4236 model score 1.3815 model score 0.4671 model score 0.4671 model score 0.3915 model score 0.3827 model score 0.3828 model score 0.3894 model score 0.2156 model score 0.4933 model score 0.5196 model score 0.4642 model score 0.3735 model score 0.3491 model score 0.3828 model score 0.3846 model score 0.4255 model score 0.8351 model score 0.4031 model score 0.4588 model score 0.4491 model score 0.4779 model score 0.5069 model score 0.3239 model score 0.3517 model score 0.3982 model score 0.4844 model score 0.3874 model score 0.3475 model score 0.5157 model score 0.5814 model score 1.1514 model score 0.4294 model score 0.4453 model score 0.3550 model score 0.3647 model score 0.4219 model score 0.4023 model score 0.3884 model score 0.3515 model score 0.3743 model score 0.4118 model score 0.3777 model score 0.3328 model score 0.3485 model score 0.4131 model score 0.2760 model score 0.3590 model score 0.5529 model score 0.5653 model score 0.5484 model score 0.5073 model score 0.5304 model score 1.2723 model score 1.2577 model score 1.2602 model score 1.2595 model score 1.2603 model score 1.2591 model score 1.2771 model score 1.2614 model score 1.2605 model score 1.2607 model score 0.7233 model score 0.3741 model score 0.1495 model score 0.2707 model score 0.2600 model score 0.7082 model score 0.5880 model score 0.5802 model score 0.3886 model score 0.8480 model score 0.7233 model score 0.5672 model score 0.3245 model score 0.6140 model score 0.9445 model score 0.7876 model score 0.5438 model score 0.4868 model score 0.8331 model score 0.3179 model score 1.2780 model score 1.2618 model score 1.2609 model score 1.2590 model score 0.2893 model score 1.2577 model score 1.2618 model score 1.2602 model score 1.2590 model score 0.0884 model score 0.3456 model score 0.0833 model score 0.1515 model score 0.2028 model score 0.3886 model score 0.3498 model score 1.2602 model score 1.2754 model score 1.2604 model score 1.2619 model score 1.2607 model score 1.2611 model score 1.2627 model score 1.2600 model score 1.2616 model score 1.2623 model score 0.5353 model score 1.6532 model score 1.2887 model score 1.6890 model score 0.6026 model score 2.5462 model score 2.6336 model score 2.1936 model score 2.2545 model score 2.2015 model score 0.2044 model score 0.4051 model score 0.4094 model score 0.4132 model score 1.3732 model score 0.3750 model score 0.3751 model score 0.8036 model score 0.1847 model score 0.1847 model score 0.3088 model score 0.4435 model score 0.3453 model score 1.1265 model score 0.4341 model score 0.7347 model score 0.7229 model score 0.3302 USE_META, weight: 0.8232 cost: 0.5945 min: 0.0833 max: 2.6850 USE_META, weight: 0.8328 cost: 0.5665 min: 0.0833 max: 2.6850 USE_META, weight: 0.9348 cost: 0.2719 min: 0.0833 max: 2.6850 USE_META, weight: 0.9357 cost: 0.2693 min: 0.0833 max: 2.6850 USE_META, weight: 0.9336 cost: 0.2753 min: 0.0833 max: 2.6850 USE_META, weight: 0.8809 cost: 0.4276 min: 0.0833 max: 2.6850 USE_META, weight: 0.9087 cost: 0.3473 min: 0.0833 max: 2.6850 USE_META, weight: 0.8798 cost: 0.4309 min: 0.0833 max: 2.6850 USE_META, weight: 0.9199 cost: 0.3148 min: 0.0833 max: 2.6850 USE_META, weight: 0.9338 cost: 0.2746 min: 0.0833 max: 2.6850 USE_META, weight: 0.9326 cost: 0.2781 min: 0.0833 max: 2.6850 USE_META, weight: 0.9326 cost: 0.2781 min: 0.0833 max: 2.6850 USE_META, weight: 0.8191 cost: 0.6062 min: 0.0833 max: 2.6850 USE_META, weight: 0.8158 cost: 0.6159 min: 0.0833 max: 2.6850 USE_META, weight: 0.8136 cost: 0.6222 min: 0.0833 max: 2.6850 USE_META, weight: 0.5885 cost: 1.2728 min: 0.0833 max: 2.6850 USE_META, weight: 0.8525 cost: 0.5096 min: 0.0833 max: 2.6850 USE_META, weight: 0.9345 cost: 0.2726 min: 0.0833 max: 2.6850 USE_META, weight: 0.9304 cost: 0.2844 min: 0.0833 max: 2.6850 USE_META, weight: 0.7642 cost: 0.7648 min: 0.0833 max: 2.6850 USE_META, weight: 0.3011 cost: 2.1037 min: 0.0833 max: 2.6850 USE_META, weight: 0.1722 cost: 2.4763 min: 0.0833 max: 2.6850 USE_META, weight: 0.4923 cost: 1.5511 min: 0.0833 max: 2.6850 USE_META, weight: 0.4934 cost: 1.5477 min: 0.0833 max: 2.6850 USE_META, weight: 0.4587 cost: 1.6480 min: 0.0833 max: 2.6850 USE_META, weight: 0.5353 cost: 1.4268 min: 0.0833 max: 2.6850 USE_META, weight: 0.5167 cost: 1.4805 min: 0.0833 max: 2.6850 USE_META, weight: 0.8658 cost: 0.4712 min: 0.0833 max: 2.6850 USE_META, weight: 0.3789 cost: 1.8787 min: 0.0833 max: 2.6850 USE_META, weight: 0.7508 cost: 0.8036 min: 0.0833 max: 2.6850 USE_META, weight: 0.6235 cost: 1.1716 min: 0.0833 max: 2.6850 USE_META, weight: 0.9323 cost: 0.2790 min: 0.0833 max: 2.6850 USE_META, weight: 0.9176 cost: 0.3216 min: 0.0833 max: 2.6850 USE_META, weight: 0.9708 cost: 0.1676 min: 0.0833 max: 2.6850 USE_META, weight: 0.9481 cost: 0.2333 min: 0.0833 max: 2.6850 USE_META, weight: 0.8580 cost: 0.4939 min: 0.0833 max: 2.6850 USE_META, weight: 0.8045 cost: 0.6484 min: 0.0833 max: 2.6850 USE_META, weight: 0.9359 cost: 0.2685 min: 0.0833 max: 2.6850 USE_META, weight: 0.8722 cost: 0.4527 min: 0.0833 max: 2.6850 USE_META, weight: 0.9521 cost: 0.2218 min: 0.0833 max: 2.6850 USE_META, weight: 0.4488 cost: 1.6766 min: 0.0833 max: 2.6850 USE_META, weight: 0.3422 cost: 1.9849 min: 0.0833 max: 2.6850 USE_META, weight: 0.5920 cost: 1.2627 min: 0.0833 max: 2.6850 USE_META, weight: 0.5902 cost: 1.2680 min: 0.0833 max: 2.6850 USE_META, weight: 0.5921 cost: 1.2624 min: 0.0833 max: 2.6850 USE_META, weight: 0.5908 cost: 1.2662 min: 0.0833 max: 2.6850 USE_META, weight: 0.5922 cost: 1.2622 min: 0.0833 max: 2.6850 USE_META, weight: 0.9067 cost: 0.3530 min: 0.0833 max: 2.6850 USE_META, weight: 0.9292 cost: 0.2880 min: 0.0833 max: 2.6850 USE_META, weight: 0.9483 cost: 0.2328 min: 0.0833 max: 2.6850 USE_META, weight: 0.9118 cost: 0.3383 min: 0.0833 max: 2.6850 USE_META, weight: 0.6335 cost: 1.1429 min: 0.0833 max: 2.6850 USE_META, weight: 0.9456 cost: 0.2406 min: 0.0833 max: 2.6850 USE_META, weight: 0.9017 cost: 0.3676 min: 0.0833 max: 2.6850 USE_META, weight: 0.9483 cost: 0.2328 min: 0.0833 max: 2.6850 USE_META, weight: 0.9532 cost: 0.2186 min: 0.0833 max: 2.6850 USE_META, weight: 0.7560 cost: 0.7887 min: 0.0833 max: 2.6850 USE_META, weight: 0.7642 cost: 0.7648 min: 0.0833 max: 2.6850 USE_META, weight: 0.7084 cost: 0.9263 min: 0.0833 max: 2.6850 USE_META, weight: 0.9345 cost: 0.2726 min: 0.0833 max: 2.6850 USE_META, weight: 0.3227 cost: 2.0413 min: 0.0833 max: 2.6850 USE_META, weight: 0.6725 cost: 1.0300 min: 0.0833 max: 2.6850 USE_META, weight: 0.5918 cost: 1.2634 min: 0.0833 max: 2.6850 USE_META, weight: 0.5867 cost: 1.2780 min: 0.0833 max: 2.6850 USE_META, weight: 0.5919 cost: 1.2631 min: 0.0833 max: 2.6850 USE_META, weight: 0.5882 cost: 1.2737 min: 0.0833 max: 2.6850 USE_META, weight: 0.5910 cost: 1.2655 min: 0.0833 max: 2.6850 USE_META, weight: 0.5918 cost: 1.2634 min: 0.0833 max: 2.6850 USE_META, weight: 0.5867 cost: 1.2780 min: 0.0833 max: 2.6850 USE_META, weight: 0.5919 cost: 1.2631 min: 0.0833 max: 2.6850 USE_META, weight: 0.5884 cost: 1.2731 min: 0.0833 max: 2.6850 USE_META, weight: 0.5833 cost: 1.2878 min: 0.0833 max: 2.6850 USE_META, weight: 0.1281 cost: 2.6038 min: 0.0833 max: 2.6850 USE_META, weight: 0.1000 cost: 2.6850 min: 0.0833 max: 2.6850 USE_META, weight: 0.1023 cost: 2.6785 min: 0.0833 max: 2.6850 USE_META, weight: 0.1194 cost: 2.6289 min: 0.0833 max: 2.6850 USE_META, weight: 0.1147 cost: 2.6424 min: 0.0833 max: 2.6850 USE_META, weight: 0.8887 cost: 0.4050 min: 0.0833 max: 2.6850 USE_META, weight: 0.8443 cost: 0.5333 min: 0.0833 max: 2.6850 USE_META, weight: 0.6996 cost: 0.9516 min: 0.0833 max: 2.6850 USE_META, weight: 0.6125 cost: 1.2035 min: 0.0833 max: 2.6850 USE_META, weight: 0.7667 cost: 0.7576 min: 0.0833 max: 2.6850 USE_META, weight: 0.5931 cost: 1.2595 min: 0.0833 max: 2.6850 USE_META, weight: 0.5921 cost: 1.2625 min: 0.0833 max: 2.6850 USE_META, weight: 0.5876 cost: 1.2754 min: 0.0833 max: 2.6850 USE_META, weight: 0.5864 cost: 1.2789 min: 0.0833 max: 2.6850 USE_META, weight: 0.5881 cost: 1.2739 min: 0.0833 max: 2.6850 USE_META, weight: 0.9532 cost: 0.2186 min: 0.0833 max: 2.6850 USE_META, weight: 0.8298 cost: 0.5754 min: 0.0833 max: 2.6850 USE_META, weight: 0.7824 cost: 0.7122 min: 0.0833 max: 2.6850 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USE_EVALUE, weight: 0.9798 eval: 0.3303 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.6044 eval: 6.4641 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.6044 eval: 6.4641 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.6044 eval: 6.4641 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9935 eval: 0.1066 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9935 eval: 0.1066 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9935 eval: 0.1066 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9765 eval: 0.3836 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9765 eval: 0.3836 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9765 eval: 0.3836 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.1000 eval: 14.7060 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.1000 eval: 14.7060 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.1000 eval: 14.7060 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9801 eval: 0.3252 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9801 eval: 0.3252 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9801 eval: 0.3252 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.2535 eval: 12.1980 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.2535 eval: 12.1980 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.2535 eval: 12.1980 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9863 eval: 0.2244 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9863 eval: 0.2244 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9863 eval: 0.2244 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.4761 eval: 8.5605 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.4761 eval: 8.5605 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.4761 eval: 8.5605 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.5906 eval: 6.6899 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.5906 eval: 6.6899 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.5906 eval: 6.6899 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9943 eval: 0.0937 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9943 eval: 0.0937 min: 0.0000 max: 14.7060 USE_EVALUE, weight: 0.9943 eval: 0.0937 min: 0.0000 max: 14.7060 Number of contacts in models: 260 Number of contacts in alignments: 156 NUMB_ALIGNS: 156 Adding 33277 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -691.8551, CN propb: -691.8551 weights: 0.1186 constraints: 1595 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1595 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1595 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 31682 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 31682 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 33277 # command: