# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/ # command:# Making conformation for sequence T0313 numbered 1 through 322 Created new target T0313 from T0313.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 3kinB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 3kinB expands to /projects/compbio/data/pdb/3kin.pdb.gz 3kinB:# T0313 read from 3kinB/merged-good-all-a2m # 3kinB read from 3kinB/merged-good-all-a2m # adding 3kinB to template set # found chain 3kinB in template set T0313 256 :SLSALGDVIAALRSRQG 3kinB 258 :SLSALGNVISALAEGTK # choosing archetypes in rotamer library T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 3kinB 276 :HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2 Number of alignments=1 # 3kinB read from 3kinB/merged-good-all-a2m # found chain 3kinB in template set T0313 256 :SLSALGDVIAALRSRQG 3kinB 258 :SLSALGNVISALAEGTK T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 3kinB 276 :HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4 Number of alignments=2 # 3kinB read from 3kinB/merged-good-all-a2m # found chain 3kinB in template set T0313 256 :SLSALGDVIAALRS 3kinB 258 :SLSALGNVISALAE T0313 270 :RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 3kinB 273 :TKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ncdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ncdA expands to /projects/compbio/data/pdb/2ncd.pdb.gz 2ncdA:# T0313 read from 2ncdA/merged-good-all-a2m # 2ncdA read from 2ncdA/merged-good-all-a2m # adding 2ncdA to template set # found chain 2ncdA in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ncdA)N598 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ncdA)N598 T0313 2 :IRVIARVRPVTKEDGEGP 2ncdA 349 :IRVFCRIRPPLESEENRM T0313 21 :ATNAVTFDADDDSIIHLL 2ncdA 367 :CCTWTYHDESTVELQSID T0313 39 :HKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKAS 2ncdA 389 :SKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRN T0313 121 :DWEYTITVSAAEIYNEVLRDLLGKEPQ 2ncdA 472 :GWEYEIKATFLEIYNEVLYDLLSNEQK T0313 149 :KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 2ncdA 499 :DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE T0313 240 :S 2ncdA 586 :S T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 2ncdA 599 :INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV Number of specific fragments extracted= 7 number of extra gaps= 0 total=13 Number of alignments=4 # 2ncdA read from 2ncdA/merged-good-all-a2m # found chain 2ncdA in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ncdA)N598 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ncdA)N598 T0313 1 :NIRVIARVRPVTKEDG 2ncdA 348 :NIRVFCRIRPPLESEE T0313 19 :PEATNAVTFDADDDSIIHLL 2ncdA 364 :NRMCCTWTYHDESTVELQSI T0313 39 :HKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKAS 2ncdA 389 :SKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRN T0313 121 :DWEYTITVSAAEIYNEVLRDLLGKEPQE 2ncdA 472 :GWEYEIKATFLEIYNEVLYDLLSNEQKD T0313 152 :IRLCPDG 2ncdA 500 :MEIRMAK T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSER 2ncdA 509 :KNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 2ncdA 599 :INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV Number of specific fragments extracted= 7 number of extra gaps= 0 total=20 Number of alignments=5 # 2ncdA read from 2ncdA/merged-good-all-a2m # found chain 2ncdA in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2ncdA)N598 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2ncdA)N598 T0313 1 :NIRVIARVRPVTKEDGEGPEAT 2ncdA 348 :NIRVFCRIRPPLESEENRMCCT T0313 25 :VTFDADDDSIIHLL 2ncdA 370 :WTYHDESTVELQSI T0313 39 :HKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE 2ncdA 389 :SKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG T0313 118 :KASDWEYTITVSAAEIYNEVLRDLLGKEPQE 2ncdA 469 :RNLGWEYEIKATFLEIYNEVLYDLLSNEQKD T0313 150 :LEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 2ncdA 500 :MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE T0313 240 :S 2ncdA 586 :S T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 2ncdA 599 :INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV Number of specific fragments extracted= 7 number of extra gaps= 0 total=27 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2kinA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2kinA expands to /projects/compbio/data/pdb/2kin.pdb.gz 2kinA:Skipped atom 1516, because occupancy 0.5 <= existing 0.500 in 2kinA Skipped atom 1518, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1520, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1522, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1524, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1526, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1528, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 2kinA Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2kinA # T0313 read from 2kinA/merged-good-all-a2m # 2kinA read from 2kinA/merged-good-all-a2m # adding 2kinA to template set # found chain 2kinA in template set Warning: unaligning (T0313)T86 because of BadResidue code BAD_PEPTIDE in next template residue (2kinA)S89 Warning: unaligning (T0313)G87 because of BadResidue code BAD_PEPTIDE at template residue (2kinA)S89 T0313 3 :RVIARVRPVTKEDGEGPEATNAVTFDADDDSI 2kinA 10 :KVMCRFRPLNEAEILRGDKFIPKFKGEETVVI T0313 39 :HKGKP 2kinA 42 :GQGKP T0313 46 :FELDKVFSPQASQQDVFQEV 2kinA 47 :YVFDRVLPPNTTQEQVYNAC T0313 66 :QALVTSCIDGFNVCIFAYGQ 2kinA 68 :KQIVKDVLEGYNGTIFAYGQ T0313 88 :AGKTYTMEG 2kinA 90 :SGKTHTMEG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ 2kinA 102 :DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT T0313 151 :EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSER 2kinA 153 :NLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEK Number of specific fragments extracted= 7 number of extra gaps= 1 total=34 Number of alignments=7 # 2kinA read from 2kinA/merged-good-all-a2m # found chain 2kinA in template set Warning: unaligning (T0313)T86 because of BadResidue code BAD_PEPTIDE in next template residue (2kinA)S89 Warning: unaligning (T0313)G87 because of BadResidue code BAD_PEPTIDE at template residue (2kinA)S89 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSI 2kinA 9 :IKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI T0313 41 :GKPVSFELDKVFSPQASQQDVFQEV 2kinA 42 :GQGKPYVFDRVLPPNTTQEQVYNAC T0313 66 :QALVTSCIDGFNVCIFAYGQ 2kinA 68 :KQIVKDVLEGYNGTIFAYGQ T0313 88 :AGKTYTMEGTAENP 2kinA 90 :SGKTHTMEGKLHDP T0313 102 :GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 2kinA 107 :GIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSER 2kinA 154 :LAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEK Number of specific fragments extracted= 6 number of extra gaps= 1 total=40 Number of alignments=8 # 2kinA read from 2kinA/merged-good-all-a2m # found chain 2kinA in template set Warning: unaligning (T0313)T86 because of BadResidue code BAD_PEPTIDE in next template residue (2kinA)S89 Warning: unaligning (T0313)G87 because of BadResidue code BAD_PEPTIDE at template residue (2kinA)S89 T0313 3 :RVIARVRPVTKEDGEGPEATNAVTFDADDDSI 2kinA 10 :KVMCRFRPLNEAEILRGDKFIPKFKGEETVVI T0313 41 :GKPVSFELDKVFSPQASQQDVFQ 2kinA 42 :GQGKPYVFDRVLPPNTTQEQVYN T0313 64 :EVQALVTSCIDGFNVCIFAYGQ 2kinA 66 :CAKQIVKDVLEGYNGTIFAYGQ T0313 88 :AGKTYTMEG 2kinA 90 :SGKTHTMEG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 2kinA 102 :DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSER 2kinA 154 :LAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEK Number of specific fragments extracted= 6 number of extra gaps= 1 total=46 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v8kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1v8kA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1v8kA/merged-good-all-a2m.gz for input Trying 1v8kA/merged-good-all-a2m Error: Couldn't open file 1v8kA/merged-good-all-a2m or 1v8kA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t5cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1t5cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1t5cA/merged-good-all-a2m.gz for input Trying 1t5cA/merged-good-all-a2m Error: Couldn't open file 1t5cA/merged-good-all-a2m or 1t5cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gojA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1gojA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1gojA/merged-good-all-a2m.gz for input Trying 1gojA/merged-good-all-a2m Error: Couldn't open file 1gojA/merged-good-all-a2m or 1gojA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bg2/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0313 read from 1bg2/merged-good-all-a2m # 1bg2 read from 1bg2/merged-good-all-a2m # found chain 1bg2 in training set T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSII 1bg2 9 :IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA T0313 43 :PVSFELDKVFSPQASQQDVFQEV 1bg2 43 :SKPYAFDRVFQSSTSQEQVYNDC T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1bg2 67 :KKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ 1bg2 101 :DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT T0313 151 :EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGS 1bg2 152 :NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGA T0313 246 :R 1bg2 254 :I T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1bg2 255 :NKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=53 Number of alignments=10 # 1bg2 read from 1bg2/merged-good-all-a2m # found chain 1bg2 in training set T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI 1bg2 8 :NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI T0313 42 :KPVSFELDKVFSPQASQQDVFQEV 1bg2 42 :ASKPYAFDRVFQSSTSQEQVYNDC T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1bg2 67 :KKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 1bg2 101 :DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1bg2 153 :LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAK Number of specific fragments extracted= 5 number of extra gaps= 0 total=58 Number of alignments=11 # 1bg2 read from 1bg2/merged-good-all-a2m # found chain 1bg2 in training set T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSII 1bg2 8 :NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA T0313 43 :PVSFELDKVFSPQASQQDVFQ 1bg2 43 :SKPYAFDRVFQSSTSQEQVYN T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1bg2 65 :CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 1bg2 101 :DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEG 1bg2 153 :LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEG T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1bg2 255 :NKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAK Number of specific fragments extracted= 6 number of extra gaps= 0 total=64 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2kinB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2kinB expands to /projects/compbio/data/pdb/2kin.pdb.gz 2kinB:# T0313 read from 2kinB/merged-good-all-a2m # 2kinB read from 2kinB/merged-good-all-a2m # adding 2kinB to template set # found chain 2kinB in template set Warning: unaligning (T0313)G272 because of BadResidue code BAD_PEPTIDE in next template residue (2kinB)T275 T0313 255 :KSLSALGDVIAALRSRQ 2kinB 257 :KSLSALGNVISALAEGT T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 2kinB 276 :HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=66 # 2kinB read from 2kinB/merged-good-all-a2m # found chain 2kinB in template set Warning: unaligning (T0313)G272 because of BadResidue code BAD_PEPTIDE at template residue (2kinB)T275 T0313 255 :KSLSALGDVIAALRSRQ 2kinB 257 :KSLSALGNVISALAEGT T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 2kinB 276 :HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 2 number of extra gaps= 1 total=68 # 2kinB read from 2kinB/merged-good-all-a2m # found chain 2kinB in template set Warning: unaligning (T0313)Q271 because of BadResidue code BAD_PEPTIDE in next template residue (2kinB)T275 Warning: unaligning (T0313)G272 because of BadResidue code BAD_PEPTIDE at template residue (2kinB)T275 T0313 255 :KSLSALGDVIAALRS 2kinB 257 :KSLSALGNVISALAE T0313 270 :R 2kinB 273 :T T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 2kinB 276 :HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAK Number of specific fragments extracted= 3 number of extra gaps= 1 total=71 Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mkjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1mkjA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1mkjA/merged-good-all-a2m.gz for input Trying 1mkjA/merged-good-all-a2m Error: Couldn't open file 1mkjA/merged-good-all-a2m or 1mkjA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gryA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/2gryA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/2gryA/merged-good-all-a2m.gz for input Trying 2gryA/merged-good-all-a2m Error: Couldn't open file 2gryA/merged-good-all-a2m or 2gryA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x88A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x88A expands to /projects/compbio/data/pdb/1x88.pdb.gz 1x88A:# T0313 read from 1x88A/merged-good-all-a2m # 1x88A read from 1x88A/merged-good-all-a2m # adding 1x88A to template set # found chain 1x88A in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1x88A)N287 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x88A)N287 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIH 1x88A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR T0313 37 :LLHKGKPVSFELDKVFSPQASQQDVFQEV 1x88A 57 :LADKSSRKTYTFDMVFGASTKQIDVYRSV T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP 1x88A 87 :CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN T0313 102 :GINQRALQLLFSEV 1x88A 134 :GIIPRTLHQIFEKL T0313 118 :KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGS 1x88A 148 :TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 1x88A 192 :RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET T0313 217 :STG 1x88A 250 :IDG T0313 220 :LRTTGKLNLVDLAGSE 1x88A 255 :LVKIGKLNLVDLAGSE T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1x88A 288 :INQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=80 Number of alignments=14 # 1x88A read from 1x88A/merged-good-all-a2m # found chain 1x88A in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1x88A)N287 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x88A)N287 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP 1x88A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK T0313 44 :VSFELDKVFSPQASQQDVFQE 1x88A 64 :KTYTFDMVFGASTKQIDVYRS T0313 65 :VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGT 1x88A 86 :VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE T0313 98 :AENP 1x88A 128 :EEDP T0313 102 :GINQRALQLLFSEV 1x88A 134 :GIIPRTLHQIFEKL T0313 118 :KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSG 1x88A 148 :TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN T0313 161 :QLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 1x88A 193 :GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET T0313 217 :STG 1x88A 250 :IDG T0313 220 :LRTTGKLNLVDLAGSE 1x88A 255 :LVKIGKLNLVDLAGSE T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1x88A 288 :INQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=90 Number of alignments=15 # 1x88A read from 1x88A/merged-good-all-a2m # found chain 1x88A in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1x88A)N287 Warning: unaligning (T0313)H252 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1x88A)N287 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGK 1x88A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLAD T0313 43 :PVSFELDKVFSPQASQQDVFQ 1x88A 63 :RKTYTFDMVFGASTKQIDVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1x88A 85 :VVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 97 :TAENPGINQRALQLLFSEV 1x88A 129 :EDPLAGIIPRTLHQIFEKL T0313 118 :KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGS 1x88A 148 :TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGL 1x88A 192 :RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG T0313 221 :RTTGKLNLVDLAGSE 1x88A 256 :VKIGKLNLVDLAGSE T0313 253 :INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1x88A 288 :INQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=98 Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3kar/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 3kar expands to /projects/compbio/data/pdb/3kar.pdb.gz 3kar:Warning: there is no chain 3kar will retry with 3karA # T0313 read from 3kar/merged-good-all-a2m # 3kar read from 3kar/merged-good-all-a2m # adding 3kar to template set # found chain 3kar in template set Warning: unaligning (T0313)K144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kar)L545 Warning: unaligning (T0313)L150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)L545 Warning: unaligning (T0313)S240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kar)D641 Warning: unaligning (T0313)S245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)D641 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 3kar 386 :NIRVYCRIRPALKNLENSDTSLINVN T0313 27 :FDADDDSIIH 3kar 414 :DDNSGVQSME T0313 37 :LLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 3kar 427 :IQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML T0313 98 :AENPGINQRALQLLFSEVQEK 3kar 486 :NPGDGIIPSTISHIFNWINKL T0313 119 :ASDWEYTITVSAAEIYNEVLRDLLG 3kar 508 :TKGWDYKVNCEFIEIYNENIVDLLR T0313 151 :EIRLCPDGS 3kar 546 :KHEIRHDQE T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGK 3kar 556 :KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINV T0313 246 :RLREAQHINKSLSALGDVIAALRS 3kar 642 :RLRETQNINKSLSCLGDVIHALGQ T0313 270 :RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 3kar 669 :TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV Number of specific fragments extracted= 9 number of extra gaps= 0 total=107 Number of alignments=17 # 3kar read from 3kar/merged-good-all-a2m # found chain 3kar in template set Warning: unaligning (T0313)K144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kar)L545 Warning: unaligning (T0313)L150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)L545 Warning: unaligning (T0313)S240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kar)D641 Warning: unaligning (T0313)S245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)D641 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 3kar 386 :NIRVYCRIRPALKNLENSDTSLINVN T0313 27 :FDADDDSIIHLLHKGKP 3kar 414 :DDNSGVQSMEVTKIQNT T0313 44 :VSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA 3kar 434 :HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG T0313 101 :PGINQRALQLLFSEVQEK 3kar 489 :DGIIPSTISHIFNWINKL T0313 119 :ASDWEYTITVSAAEIYNEVLRDLLG 3kar 508 :TKGWDYKVNCEFIEIYNENIVDLLR T0313 151 :EIRLCPDGSGQ 3kar 546 :KHEIRHDQETK T0313 162 :LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGK 3kar 558 :TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINV T0313 246 :RLREAQHINKSLSALGDVIAALRS 3kar 642 :RLRETQNINKSLSCLGDVIHALGQ T0313 270 :RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 3kar 669 :TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV Number of specific fragments extracted= 9 number of extra gaps= 0 total=116 Number of alignments=18 # 3kar read from 3kar/merged-good-all-a2m # found chain 3kar in template set Warning: unaligning (T0313)E148 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)L545 Warning: unaligning (T0313)S240 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (3kar)D641 Warning: unaligning (T0313)S245 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (3kar)D641 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAV 3kar 386 :NIRVYCRIRPALKNLENSDTSLINV T0313 26 :TFDADDDSI 3kar 412 :EFDDNSGVQ T0313 35 :IHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 3kar 425 :TKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML T0313 98 :AENPGINQRALQLLFSEVQE 3kar 486 :NPGDGIIPSTISHIFNWINK T0313 118 :KASDWEYTITVSAAEIYNEVLRDLL 3kar 507 :KTKGWDYKVNCEFIEIYNENIVDLL T0313 149 :KLEIRL 3kar 546 :KHEIRH T0313 156 :PDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGK 3kar 552 :DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINV T0313 246 :RLREAQHINKSLSALGDVIAALRS 3kar 642 :RLRETQNINKSLSCLGDVIHALGQ T0313 270 :RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 3kar 669 :TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV Number of specific fragments extracted= 9 number of extra gaps= 0 total=125 Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sdmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1sdmA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1sdmA/merged-good-all-a2m.gz for input Trying 1sdmA/merged-good-all-a2m Error: Couldn't open file 1sdmA/merged-good-all-a2m or 1sdmA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q0bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q0bA expands to /projects/compbio/data/pdb/1q0b.pdb.gz 1q0bA:# T0313 read from 1q0bA/merged-good-all-a2m # 1q0bA read from 1q0bA/merged-good-all-a2m # adding 1q0bA to template set # found chain 1q0bA in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q0bA)I288 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q0bA)I288 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFD 1q0bA 19 :IQVVVRCRPFNLAERKASAHSIVECDP T0313 29 :ADDDSIIHLLHKGKP 1q0bA 47 :RKEVSVRTGGLADKS T0313 44 :VSFELDKVFSPQASQQDVFQEV 1q0bA 64 :KTYTFDMVFGASTKQIDVYRSV T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1q0bA 87 :CPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 102 :GINQRALQLLFSEVQE 1q0bA 134 :GIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1q0bA 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV 1q0bA 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK T0313 215 :DCSTG 1q0bA 248 :TTIDG T0313 220 :LRTTGKLNLVDLAGSE 1q0bA 255 :LVKIGKLNLVDLAGSE T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1q0bA 289 :NQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 10 number of extra gaps= 1 total=135 Number of alignments=20 # 1q0bA read from 1q0bA/merged-good-all-a2m # found chain 1q0bA in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q0bA)I288 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q0bA)I288 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP 1q0bA 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK T0313 44 :VSFELDKVFSPQASQQDVFQE 1q0bA 64 :KTYTFDMVFGASTKQIDVYRS T0313 65 :VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGT 1q0bA 86 :VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE T0313 98 :AENP 1q0bA 128 :EEDP T0313 102 :GINQRALQLLFSEVQE 1q0bA 134 :GIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1q0bA 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 1q0bA 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET T0313 217 :STG 1q0bA 250 :IDG T0313 220 :LRTTGKLNLVDLAGSE 1q0bA 255 :LVKIGKLNLVDLAGSE T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1q0bA 289 :NQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 10 number of extra gaps= 1 total=145 Number of alignments=21 # 1q0bA read from 1q0bA/merged-good-all-a2m # found chain 1q0bA in template set Warning: unaligning (T0313)R236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q0bA)I288 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q0bA)I288 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGK 1q0bA 19 :IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLAD T0313 43 :PVSFELDKVFSPQASQQDVFQ 1q0bA 63 :RKTYTFDMVFGASTKQIDVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1q0bA 85 :VVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 97 :TAENPGINQRALQLLFSEVQE 1q0bA 129 :EDPLAGIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1q0bA 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGL 1q0bA 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG T0313 221 :RTTGKLNLVDLAGSE 1q0bA 256 :VKIGKLNLVDLAGSE T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1q0bA 289 :NQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 8 number of extra gaps= 1 total=153 Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vfvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vfvA expands to /projects/compbio/data/pdb/1vfv.pdb.gz 1vfvA:# T0313 read from 1vfvA/merged-good-all-a2m # 1vfvA read from 1vfvA/merged-good-all-a2m # adding 1vfvA to template set # found chain 1vfvA in template set Warning: unaligning (T0313)T190 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)V205 Warning: unaligning (T0313)T191 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)V205 Warning: unaligning (T0313)H199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)T213 Warning: unaligning (T0313)S201 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)R216 Warning: unaligning (T0313)R202 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)R216 Warning: unaligning (T0313)G219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vfvA)T234 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfvA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)A269 Warning: unaligning (T0313)H273 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)F303 T0313 2 :IRVIARVRPVTKEDGEGPEATNA 1vfvA 6 :VKVAVRVRPFNSREMSRDSKCII T0313 26 :TFDADDDSIIHLLHKGKP 1vfvA 29 :QMSGSTTTIVNPKQPKET T0313 44 :VSFELDKVF 1vfvA 48 :KSFSFDYSY T0313 53 :SPQ 1vfvA 61 :SPE T0313 56 :ASQQDVFQEV 1vfvA 68 :ASQKQVYRDI T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1vfvA 79 :EEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TAENPGINQRALQLLFSEVQEKA 1vfvA 112 :EKDQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQE 1vfvA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNKG T0313 151 :EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNR 1vfvA 165 :NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPR T0313 200 :S 1vfvA 214 :S T0313 203 :SHALLIVTVRGVDCST 1vfvA 217 :SHAVFNIIFTQKRHDA T0313 220 :LRTTGKLNLVDLAGS 1vfvA 238 :TEKVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAAL 1vfvA 270 :NINKSLTTLGKVISAL T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1vfvA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 14 number of extra gaps= 3 total=167 Number of alignments=23 # 1vfvA read from 1vfvA/merged-good-all-a2m # found chain 1vfvA in template set Warning: unaligning (T0313)T190 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)V205 Warning: unaligning (T0313)T191 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)V205 Warning: unaligning (T0313)H199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)T213 Warning: unaligning (T0313)S201 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)R216 Warning: unaligning (T0313)R202 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)R216 Warning: unaligning (T0313)G219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vfvA)T234 Warning: unaligning (T0313)L220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vfvA)T234 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfvA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)A269 Warning: unaligning (T0313)H273 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)F303 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 1vfvA 5 :SVKVAVRVRPFNSREMSRDSKCIIQM T0313 28 :DADDDSIIHLLHKGKP 1vfvA 31 :SGSTTTIVNPKQPKET T0313 44 :VSFELDKVF 1vfvA 48 :KSFSFDYSY T0313 53 :SPQ 1vfvA 61 :SPE T0313 56 :ASQQDVFQEV 1vfvA 68 :ASQKQVYRDI T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1vfvA 79 :EEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TAENPGINQRALQLLFSEVQEKA 1vfvA 112 :EKDQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEK 1vfvA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNKGN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNR 1vfvA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPR T0313 200 :S 1vfvA 214 :S T0313 203 :SHALLIVTVRGVDCST 1vfvA 217 :SHAVFNIIFTQKRHDA T0313 222 :TTGKLNLVDLAGS 1vfvA 240 :KVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAALR 1vfvA 270 :NINKSLTTLGKVISALA T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1vfvA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 14 number of extra gaps= 3 total=181 Number of alignments=24 # 1vfvA read from 1vfvA/merged-good-all-a2m # found chain 1vfvA in template set Warning: unaligning (T0313)T190 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)V205 Warning: unaligning (T0313)T191 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)V205 Warning: unaligning (T0313)H199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)T213 Warning: unaligning (T0313)S201 because of BadResidue code BAD_PEPTIDE in next template residue (1vfvA)R216 Warning: unaligning (T0313)R202 because of BadResidue code BAD_PEPTIDE at template residue (1vfvA)R216 Warning: unaligning (T0313)G219 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vfvA)T234 Warning: unaligning (T0313)L220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vfvA)T234 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vfvA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)A269 Warning: unaligning (T0313)H273 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vfvA)F303 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVF 1vfvA 6 :VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSY T0313 53 :SPQ 1vfvA 61 :SPE T0313 56 :ASQQDVFQ 1vfvA 68 :ASQKQVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1vfvA 77 :IGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TAENPGINQRALQLLFSEVQEKA 1vfvA 112 :EKDQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEK 1vfvA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNKGN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNR 1vfvA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPR T0313 200 :S 1vfvA 214 :S T0313 203 :SHALLIVTVRGVDCST 1vfvA 217 :SHAVFNIIFTQKRHDA T0313 221 :RTTGKLNLVDLAGS 1vfvA 239 :EKVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAALRS 1vfvA 270 :NINKSLTTLGKVISALAE T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1vfvA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 12 number of extra gaps= 3 total=193 Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n6mA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1n6mA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1n6mA/merged-good-all-a2m.gz for input Trying 1n6mA/merged-good-all-a2m Error: Couldn't open file 1n6mA/merged-good-all-a2m or 1n6mA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ia0K/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1ia0K/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1ia0K/merged-good-all-a2m.gz for input Trying 1ia0K/merged-good-all-a2m Error: Couldn't open file 1ia0K/merged-good-all-a2m or 1ia0K/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i5sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i5sA expands to /projects/compbio/data/pdb/1i5s.pdb.gz 1i5sA:Skipped atom 226, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 228, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 230, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 675, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 677, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 679, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 930, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1923, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1925, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1927, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1929, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1931, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1933, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1935, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1937, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 1939, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2425, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2427, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2429, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2431, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2433, because occupancy 0.500 <= existing 0.500 in 1i5sA Skipped atom 2435, because occupancy 0.500 <= existing 0.500 in 1i5sA # T0313 read from 1i5sA/merged-good-all-a2m # 1i5sA read from 1i5sA/merged-good-all-a2m # adding 1i5sA to template set # found chain 1i5sA in template set Warning: unaligning (T0313)K42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)T46 Warning: unaligning (T0313)P43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i5sA)T46 Warning: unaligning (T0313)E99 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)Q115 Warning: unaligning (T0313)N100 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)Q115 Warning: unaligning (T0313)P146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)K163 Warning: unaligning (T0313)Q147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i5sA)K163 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i5sA)K261 Warning: unaligning (T0313)E243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)K261 Warning: unaligning (T0313)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i5sA)I304 Warning: unaligning (T0313)V274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)I304 Warning: unaligning (T0313)P303 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)A334 Warning: unaligning (T0313)V304 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)A334 T0313 1 :NIRVIARVRPVTKEDGEGPEAT 1i5sA 5 :SVKVAVRVRPFNSREMSRDSKC T0313 24 :AVTFDADDDSIIHLLHKG 1i5sA 27 :IIQMSGSTTTIVNPKQPK T0313 44 :VSFELDKVF 1i5sA 48 :KSFSFDYSY T0313 53 :SPQ 1i5sA 61 :SPE T0313 56 :ASQQDVFQEV 1i5sA 68 :ASQKQVYRDI T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i5sA 79 :EEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TA 1i5sA 112 :EK T0313 101 :PGINQRALQLLFSEVQEKA 1i5sA 116 :QGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKE 1i5sA 136 :DNMSYSVEVSYMEIYCERVRDLLNPK T0313 148 :E 1i5sA 164 :G T0313 151 :EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1i5sA 165 :NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE T0313 220 :LRTTGKLNLVDLAGSER 1i5sA 238 :TEKVSKISLVDLAGSER T0313 244 :GSRLREAQHINKSLSALGDVIAALRSR 1i5sA 262 :GTRLKEGANINKSLTTLGKVISALAEM T0313 275 :PFRNSKLTYLLQDSLSGDSKTLMVVQVS 1i5sA 305 :PYRDSVLTWLLRENLGGNSRTAMVAALS T0313 305 :EKNTSETLYSLKFAERVR 1i5sA 335 :DINYDETLSTLRYADRAK Number of specific fragments extracted= 15 number of extra gaps= 4 total=208 Number of alignments=26 # 1i5sA read from 1i5sA/merged-good-all-a2m # found chain 1i5sA in template set Warning: unaligning (T0313)K42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)T46 Warning: unaligning (T0313)P43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i5sA)T46 Warning: unaligning (T0313)E99 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)Q115 Warning: unaligning (T0313)N100 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)Q115 Warning: unaligning (T0313)P146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)K163 Warning: unaligning (T0313)Q147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i5sA)K163 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i5sA)K261 Warning: unaligning (T0313)E243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)K261 Warning: unaligning (T0313)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i5sA)I304 Warning: unaligning (T0313)V274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)I304 Warning: unaligning (T0313)P303 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)A334 Warning: unaligning (T0313)V304 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)A334 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 1i5sA 5 :SVKVAVRVRPFNSREMSRDSKCIIQM T0313 28 :DADDDSIIHLLHKG 1i5sA 31 :SGSTTTIVNPKQPK T0313 44 :VSFELDKVF 1i5sA 48 :KSFSFDYSY T0313 53 :SPQ 1i5sA 61 :SPE T0313 56 :ASQQDVFQE 1i5sA 68 :ASQKQVYRD T0313 65 :VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i5sA 78 :GEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TA 1i5sA 112 :EK T0313 101 :PGINQRALQLLFSEVQEKA 1i5sA 116 :QGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKE 1i5sA 136 :DNMSYSVEVSYMEIYCERVRDLLNPK T0313 148 :EK 1i5sA 164 :GN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1i5sA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE T0313 220 :LRTTGKLNLVDLAGSER 1i5sA 238 :TEKVSKISLVDLAGSER T0313 244 :GSRLREAQHINKSLSALGDVIAALRSR 1i5sA 262 :GTRLKEGANINKSLTTLGKVISALAEM T0313 275 :PFRNSKLTYLLQDSLSGDSKTLMVVQVS 1i5sA 305 :PYRDSVLTWLLRENLGGNSRTAMVAALS T0313 305 :EKNTSETLYSLKFAERVR 1i5sA 335 :DINYDETLSTLRYADRAK Number of specific fragments extracted= 15 number of extra gaps= 4 total=223 Number of alignments=27 # 1i5sA read from 1i5sA/merged-good-all-a2m # found chain 1i5sA in template set Warning: unaligning (T0313)K42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)T46 Warning: unaligning (T0313)E99 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)Q115 Warning: unaligning (T0313)N100 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)Q115 Warning: unaligning (T0313)P146 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)K163 Warning: unaligning (T0313)Q147 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i5sA)K163 Warning: unaligning (T0313)L220 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i5sA)N235 Warning: unaligning (T0313)V237 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i5sA)K261 Warning: unaligning (T0313)E243 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)K261 Warning: unaligning (T0313)V274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i5sA)I304 Warning: unaligning (T0313)P303 because of BadResidue code BAD_PEPTIDE in next template residue (1i5sA)A334 Warning: unaligning (T0313)V304 because of BadResidue code BAD_PEPTIDE at template residue (1i5sA)A334 T0313 1 :NIRVIARVRPVTKEDGEGPEATNA 1i5sA 5 :SVKVAVRVRPFNSREMSRDSKCII T0313 26 :TFDADDDSIIHLLHKG 1i5sA 29 :QMSGSTTTIVNPKQPK T0313 43 :PVSFELDKVF 1i5sA 47 :PKSFSFDYSY T0313 53 :SPQ 1i5sA 61 :SPE T0313 56 :ASQQDVFQ 1i5sA 68 :ASQKQVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i5sA 77 :IGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 97 :TA 1i5sA 112 :EK T0313 101 :PGINQRALQLLFSEVQE 1i5sA 116 :QGIIPQLCEDLFSRIND T0313 118 :KASDWEYTITVSAAEIYNEVLRDLLGKE 1i5sA 134 :TNDNMSYSVEVSYMEIYCERVRDLLNPK T0313 148 :EK 1i5sA 164 :GN T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1i5sA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE T0313 221 :RTTGKLNLVDLAGSER 1i5sA 239 :EKVSKISLVDLAGSER T0313 244 :GSRLREAQHINKSLSALGDVIAALRS 1i5sA 262 :GTRLKEGANINKSLTTLGKVISALAE T0313 275 :PFRNSKLTYLLQDSLSGDSKTLMVVQVS 1i5sA 305 :PYRDSVLTWLLRENLGGNSRTAMVAALS T0313 305 :EKNTSETLYSLKFAERVR 1i5sA 335 :DINYDETLSTLRYADRAK Number of specific fragments extracted= 15 number of extra gaps= 5 total=238 Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f9tA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1f9tA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1f9tA/merged-good-all-a2m.gz for input Trying 1f9tA/merged-good-all-a2m Error: Couldn't open file 1f9tA/merged-good-all-a2m or 1f9tA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ry6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0313 read from 1ry6A/merged-good-all-a2m # 1ry6A read from 1ry6A/merged-good-all-a2m # found chain 1ry6A in training set Warning: unaligning (T0313)G143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ry6A)K168 Warning: unaligning (T0313)K144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ry6A)K168 Warning: unaligning (T0313)R270 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ry6A)K278 Warning: unaligning (T0313)Q271 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ry6A)K278 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIH 1ry6A 2 :IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDE T0313 37 :LLHKGKPVSFELDKVFSPQASQQDVFQEV 1ry6A 43 :MTKYIERHEFIVDKVFDDTVDNFTVYENT T0313 66 :QALVTSCI 1ry6A 73 :KPLIIDLY T0313 74 :DGFNVCIFAYGQTGAGKTYTMEG 1ry6A 82 :NGCVCSCFAYGQTGSGKTYTMLG T0313 97 :TAE 1ry6A 110 :QSD T0313 102 :GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL 1ry6A 115 :GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV 1ry6A 169 :KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI T0313 218 :TGLRTTGKLNLVDLAGSERVGKSGAEGSR 1ry6A 224 :NKNTSLGKIAFIDLAGSERGADTVSQNKQ T0313 247 :LREAQHINKSLSALGDVIAALRS 1ry6A 254 :QTDGANINRSLLALKECIRAMDS T0313 272 :GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ry6A 279 :NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK Number of specific fragments extracted= 10 number of extra gaps= 2 total=248 Number of alignments=29 # 1ry6A read from 1ry6A/merged-good-all-a2m # found chain 1ry6A in training set Warning: unaligning (T0313)G143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ry6A)K168 Warning: unaligning (T0313)K144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ry6A)K168 Warning: unaligning (T0313)R270 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ry6A)K278 Warning: unaligning (T0313)Q271 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ry6A)K278 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI 1ry6A 1 :MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYI T0313 35 :IHLLHKGKP 1ry6A 36 :EPRYKVDMT T0313 44 :VSFELDKVFSPQASQQDVFQE 1ry6A 50 :HEFIVDKVFDDTVDNFTVYEN T0313 65 :VQALVTSCI 1ry6A 72 :IKPLIIDLY T0313 74 :DGFNVCIFAYGQTGAGKTYTMEGT 1ry6A 82 :NGCVCSCFAYGQTGSGKTYTMLGS T0313 98 :AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL 1ry6A 111 :SDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG 1ry6A 169 :KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD T0313 217 :STGLRTTGKLNLVDLAGSERVGKSGAEGS 1ry6A 223 :INKNTSLGKIAFIDLAGSERGADTVSQNK T0313 246 :RLREAQHINKSLSALGDVIAALRS 1ry6A 253 :TQTDGANINRSLLALKECIRAMDS T0313 272 :GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ry6A 279 :NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK Number of specific fragments extracted= 10 number of extra gaps= 2 total=258 Number of alignments=30 # 1ry6A read from 1ry6A/merged-good-all-a2m # found chain 1ry6A in training set Warning: unaligning (T0313)G143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ry6A)K168 Warning: unaligning (T0313)K144 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ry6A)K168 Warning: unaligning (T0313)R270 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ry6A)K278 Warning: unaligning (T0313)Q271 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ry6A)K278 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSI 1ry6A 2 :IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYI T0313 35 :IHLLHKGK 1ry6A 37 :PRYKVDMT T0313 43 :PVSFELDKVFSPQASQQDVFQ 1ry6A 49 :RHEFIVDKVFDDTVDNFTVYE T0313 64 :EVQALVTSCI 1ry6A 71 :TIKPLIIDLY T0313 74 :DGFNVCIFAYGQTGAGKTYTMEG 1ry6A 82 :NGCVCSCFAYGQTGSGKTYTMLG T0313 97 :TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL 1ry6A 110 :QSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV 1ry6A 169 :KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI T0313 218 :TGLRTTGKLNLVDLAGSERVGKSGAEG 1ry6A 224 :NKNTSLGKIAFIDLAGSERGADTVSQN T0313 245 :SRLREAQHINKSLSALGDVIAALRS 1ry6A 252 :QTQTDGANINRSLLALKECIRAMDS T0313 272 :GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ry6A 279 :NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK Number of specific fragments extracted= 10 number of extra gaps= 2 total=268 Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f9uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1f9uA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1f9uA/merged-good-all-a2m.gz for input Trying 1f9uA/merged-good-all-a2m Error: Couldn't open file 1f9uA/merged-good-all-a2m or 1f9uA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cz7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cz7A expands to /projects/compbio/data/pdb/1cz7.pdb.gz 1cz7A:# T0313 read from 1cz7A/merged-good-all-a2m # 1cz7A read from 1cz7A/merged-good-all-a2m # adding 1cz7A to template set # found chain 1cz7A in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cz7A)I599 Warning: unaligning (T0313)I253 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cz7A)I599 T0313 2 :IRVIARVRPVTKEDGE 1cz7A 349 :IRVFCRIRPPLESEEN T0313 19 :PEATNAVTFDADDDSIIH 1cz7A 365 :RMCCTWTYHDESTVELQS T0313 37 :LLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKAS 1cz7A 387 :AKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRN T0313 121 :DWEYTITVSAAEIYNEVLRDLLGKEPQ 1cz7A 472 :GWEYEIKATFLEIYNEVLYDLLSNEQK T0313 149 :KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 1cz7A 499 :DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE T0313 240 :S 1cz7A 586 :S T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1cz7A 600 :NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN Number of specific fragments extracted= 7 number of extra gaps= 0 total=275 Number of alignments=32 # 1cz7A read from 1cz7A/merged-good-all-a2m # found chain 1cz7A in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cz7A)I599 Warning: unaligning (T0313)I253 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cz7A)I599 T0313 2 :IRVIARVRPVTKEDG 1cz7A 349 :IRVFCRIRPPLESEE T0313 19 :PEATNAVTFDADDDSIIHLLHKG 1cz7A 364 :NRMCCTWTYHDESTVELQSIDAQ T0313 42 :KPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKAS 1cz7A 392 :GQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRN T0313 121 :DWEYTITVSAAEIYNEVLRDLLGKEPQE 1cz7A 472 :GWEYEIKATFLEIYNEVLYDLLSNEQKD T0313 152 :IRLCPDGSGQ 1cz7A 500 :MEIRMAKNNK T0313 162 :LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 1cz7A 512 :IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE T0313 240 :S 1cz7A 586 :S T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 1cz7A 600 :NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV Number of specific fragments extracted= 8 number of extra gaps= 0 total=283 Number of alignments=33 # 1cz7A read from 1cz7A/merged-good-all-a2m # found chain 1cz7A in template set Warning: unaligning (T0313)G241 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1cz7A)I599 Warning: unaligning (T0313)I253 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1cz7A)I599 T0313 1 :NIRVIARVRPVTKEDGEGPEA 1cz7A 348 :NIRVFCRIRPPLESEENRMCC T0313 24 :AVTFDADDDSIIHLL 1cz7A 369 :TWTYHDESTVELQSI T0313 39 :HKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKAS 1cz7A 389 :SKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRN T0313 121 :DWEYTITVSAAEIYNEVLRDLLGKEPQE 1cz7A 472 :GWEYEIKATFLEIYNEVLYDLLSNEQKD T0313 150 :LEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 1cz7A 500 :MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE T0313 240 :S 1cz7A 586 :S T0313 254 :NKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 1cz7A 600 :NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV Number of specific fragments extracted= 7 number of extra gaps= 0 total=290 Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ii6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ii6A expands to /projects/compbio/data/pdb/1ii6.pdb.gz 1ii6A:# T0313 read from 1ii6A/merged-good-all-a2m # 1ii6A read from 1ii6A/merged-good-all-a2m # adding 1ii6A to template set # found chain 1ii6A in template set Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ii6A)R281 Warning: unaligning (T0313)R246 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ii6A)R281 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP 1ii6A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK T0313 44 :VSFELDKVFSPQASQQDVFQEV 1ii6A 64 :KTYTFDMVFGASTKQIDVYRSV T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1ii6A 87 :CPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 97 :TAENP 1ii6A 120 :SPNEE T0313 102 :GINQRALQLLFSEVQE 1ii6A 134 :GIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1ii6A 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 1ii6A 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET T0313 217 :STG 1ii6A 250 :IDG T0313 220 :LRTTGKLNLVDLAGS 1ii6A 255 :LVKIGKLNLVDLAGS T0313 247 :LREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ii6A 282 :AREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=300 Number of alignments=35 # 1ii6A read from 1ii6A/merged-good-all-a2m # found chain 1ii6A in template set Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ii6A)R281 Warning: unaligning (T0313)R246 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ii6A)R281 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP 1ii6A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADK T0313 44 :VSFELDKVFSPQASQQDVFQE 1ii6A 64 :KTYTFDMVFGASTKQIDVYRS T0313 65 :VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1ii6A 86 :VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 102 :GINQRALQLLFSEVQE 1ii6A 134 :GIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1ii6A 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1ii6A 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID T0313 220 :LRTTGKLNLVDLAGS 1ii6A 255 :LVKIGKLNLVDLAGS T0313 247 :LREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ii6A 282 :AREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=308 Number of alignments=36 # 1ii6A read from 1ii6A/merged-good-all-a2m # found chain 1ii6A in template set Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ii6A)R281 Warning: unaligning (T0313)R246 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ii6A)R281 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGK 1ii6A 18 :NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLAD T0313 43 :PVSFELDKVFSPQASQQDVFQ 1ii6A 63 :RKTYTFDMVFGASTKQIDVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1ii6A 85 :VVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG T0313 97 :TAENPGINQRALQLLFSEVQE 1ii6A 129 :EDPLAGIIPRTLHQIFEKLTD T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG 1ii6A 150 :NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP T0313 159 :SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGL 1ii6A 191 :KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG T0313 221 :RTTGKLNLVDLAGS 1ii6A 256 :VKIGKLNLVDLAGS T0313 247 :LREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1ii6A 282 :AREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=316 Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i6iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i6iA expands to /projects/compbio/data/pdb/1i6i.pdb.gz 1i6iA:Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 117, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 119, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 121, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 123, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 125, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 127, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 160, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 162, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 164, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 166, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 168, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 170, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 172, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 174, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 176, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 681, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 683, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 685, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 693, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 695, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 697, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1699, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1701, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1709, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1711, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1713, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1966, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1968, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1970, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1972, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1974, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1976, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1995, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1997, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2001, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2506, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2508, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2510, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2512, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2514, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2516, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2518, because occupancy 0.500 <= existing 0.500 in 1i6iA Skipped atom 2520, because occupancy 0.500 <= existing 0.500 in 1i6iA # T0313 read from 1i6iA/merged-good-all-a2m # 1i6iA read from 1i6iA/merged-good-all-a2m # adding 1i6iA to template set # found chain 1i6iA in template set Warning: unaligning (T0313)T97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)K113 Warning: unaligning (T0313)A98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)K113 Warning: unaligning (T0313)E148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)N165 Warning: unaligning (T0313)E151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)N165 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i6iA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)A269 Warning: unaligning (T0313)H273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)F303 T0313 2 :IRVIARVRPVTKEDGEGPEATNA 1i6iA 6 :VKVAVRVRPFNSREMSRDSKCII T0313 26 :TFDADDDSIIH 1i6iA 29 :QMSGSTTTIVN T0313 37 :LLHKGKPVSFELDKVF 1i6iA 41 :KQPKETPKSFSFDYSY T0313 53 :SPQ 1i6iA 61 :SPE T0313 56 :ASQQDVFQEV 1i6iA 68 :ASQKQVYRDI T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i6iA 79 :EEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 99 :ENPGINQRALQLLFSEVQEKA 1i6iA 114 :DQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQ 1i6iA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNK T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1i6iA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE T0313 220 :LRTTGKLNLVDLAGS 1i6iA 238 :TEKVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAAL 1i6iA 270 :NINKSLTTLGKVISAL T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1i6iA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 12 number of extra gaps= 2 total=328 Number of alignments=38 # 1i6iA read from 1i6iA/merged-good-all-a2m # found chain 1i6iA in template set Warning: unaligning (T0313)T97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)K113 Warning: unaligning (T0313)A98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)K113 Warning: unaligning (T0313)E148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)N165 Warning: unaligning (T0313)K149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)N165 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i6iA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)A269 Warning: unaligning (T0313)H273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)F303 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 1i6iA 5 :SVKVAVRVRPFNSREMSRDSKCIIQM T0313 28 :DADDDSIIHLLHKGKP 1i6iA 31 :SGSTTTIVNPKQPKET T0313 44 :VSFELDKVF 1i6iA 48 :KSFSFDYSY T0313 53 :SPQ 1i6iA 61 :SPE T0313 56 :ASQQDVFQEV 1i6iA 68 :ASQKQVYRDI T0313 66 :QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i6iA 79 :EEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 99 :ENPGINQRALQLLFSEVQEKA 1i6iA 114 :DQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQ 1i6iA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNK T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG 1i6iA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE T0313 220 :LRTTGKLNLVDLAGS 1i6iA 238 :TEKVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAALR 1i6iA 270 :NINKSLTTLGKVISALA T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1i6iA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 12 number of extra gaps= 2 total=340 Number of alignments=39 # 1i6iA read from 1i6iA/merged-good-all-a2m # found chain 1i6iA in template set Warning: unaligning (T0313)T97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)K113 Warning: unaligning (T0313)A98 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)K113 Warning: unaligning (T0313)E148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i6iA)N165 Warning: unaligning (T0313)K149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i6iA)N165 Warning: unaligning (T0313)E235 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1i6iA)A269 Warning: unaligning (T0313)Q251 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)A269 Warning: unaligning (T0313)H273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1i6iA)F303 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVF 1i6iA 6 :VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSY T0313 53 :SPQ 1i6iA 61 :SPE T0313 56 :ASQQDVFQ 1i6iA 68 :ASQKQVYR T0313 64 :EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG 1i6iA 77 :IGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG T0313 99 :ENPGINQRALQLLFSEVQEKA 1i6iA 114 :DQQGIIPQLCEDLFSRINDTT T0313 120 :SDWEYTITVSAAEIYNEVLRDLLGKEPQ 1i6iA 136 :DNMSYSVEVSYMEIYCERVRDLLNPKNK T0313 152 :IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGL 1i6iA 166 :LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET T0313 221 :RTTGKLNLVDLAGS 1i6iA 239 :EKVSKISLVDLAGS T0313 252 :HINKSLSALGDVIAALRS 1i6iA 270 :NINKSLTTLGKVISALAE T0313 274 :VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1i6iA 304 :IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK Number of specific fragments extracted= 10 number of extra gaps= 2 total=350 Number of alignments=40 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f9vA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0313 read from 1f9vA/merged-good-all-a2m # 1f9vA read from 1f9vA/merged-good-all-a2m # found chain 1f9vA in training set Warning: unaligning (T0313)E151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)K546 Warning: unaligning (T0313)H186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)E594 Warning: unaligning (T0313)E198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)E594 Warning: unaligning (T0313)C216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)G615 Warning: unaligning (T0313)G219 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)G615 Warning: unaligning (T0313)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)R671 T0313 2 :IRVIARVRPVTKEDGEGPEATNAVT 1f9vA 387 :IRVYCRIRPALKNLENSDTSLINVN T0313 27 :FDAD 1f9vA 414 :DDNS T0313 31 :DDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 1f9vA 421 :SMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML T0313 98 :AENPGINQRALQLLFSEVQEKA 1f9vA 486 :NPGDGIIPSTISHIFNWINKLK T0313 120 :SDWEYTITVSAAEIYNEVLRDLL 1f9vA 509 :KGWDYKVNCEFIEIYNENIVDLL T0313 152 :IRLC 1f9vA 547 :HEIR T0313 156 :PDGSGQLYVPGLTEFQVQSVDDINKVFEFG 1f9vA 552 :DQETKTTTITNVTSCKLESEEMVEIILKKA T0313 199 :HSSRSHALLIVTVRGVD 1f9vA 595 :HSSASHSIFIIHLSGSN T0313 220 :LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR 1f9vA 616 :AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQP T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1f9vA 672 :HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN Number of specific fragments extracted= 10 number of extra gaps= 0 total=360 Number of alignments=41 # 1f9vA read from 1f9vA/merged-good-all-a2m # found chain 1f9vA in training set Warning: unaligning (T0313)G143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)K546 Warning: unaligning (T0313)E151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)K546 Warning: unaligning (T0313)H186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)E594 Warning: unaligning (T0313)E198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)E594 Warning: unaligning (T0313)C216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)G615 Warning: unaligning (T0313)G219 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)G615 Warning: unaligning (T0313)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)R671 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAVT 1f9vA 386 :NIRVYCRIRPALKNLENSDTSLINVN T0313 27 :FDADD 1f9vA 414 :DDNSG T0313 32 :DSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA 1f9vA 422 :MEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG T0313 101 :PGINQRALQLLFSEVQEKA 1f9vA 489 :DGIIPSTISHIFNWINKLK T0313 120 :SDWEYTITVSAAEIYNEVLRDLL 1f9vA 509 :KGWDYKVNCEFIEIYNENIVDLL T0313 152 :IRLCPDGS 1f9vA 547 :HEIRHDQE T0313 160 :GQLYVPGLTEFQVQSVDDINKVFEFG 1f9vA 556 :KTTTITNVTSCKLESEEMVEIILKKA T0313 199 :HSSRSHALLIVTVRGVD 1f9vA 595 :HSSASHSIFIIHLSGSN T0313 220 :LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR 1f9vA 616 :AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQP T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 1f9vA 672 :HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN Number of specific fragments extracted= 10 number of extra gaps= 0 total=370 Number of alignments=42 # 1f9vA read from 1f9vA/merged-good-all-a2m # found chain 1f9vA in training set Warning: unaligning (T0313)K149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)K546 Warning: unaligning (T0313)H186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)E594 Warning: unaligning (T0313)E198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)E594 Warning: unaligning (T0313)C216 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1f9vA)G615 Warning: unaligning (T0313)G219 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)G615 Warning: unaligning (T0313)G272 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1f9vA)R671 T0313 1 :NIRVIARVRPVTKEDGEGPEATNAV 1f9vA 386 :NIRVYCRIRPALKNLENSDTSLINV T0313 26 :TFDADDDSI 1f9vA 412 :EFDDNSGVQ T0313 35 :IHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 1f9vA 425 :TKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML T0313 98 :AENPGINQRALQLLFSEVQEKAS 1f9vA 486 :NPGDGIIPSTISHIFNWINKLKT T0313 121 :DWEYTITVSAAEIYNEVLRDLL 1f9vA 510 :GWDYKVNCEFIEIYNENIVDLL T0313 150 :LEIRL 1f9vA 547 :HEIRH T0313 156 :PDGSGQLYVPGLTEFQVQSVDDINKVFEFG 1f9vA 552 :DQETKTTTITNVTSCKLESEEMVEIILKKA T0313 199 :HSSRSHALLIVTVRGVD 1f9vA 595 :HSSASHSIFIIHLSGSN T0313 220 :LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS 1f9vA 616 :AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ T0313 273 :HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 1f9vA 672 :HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV Number of specific fragments extracted= 10 number of extra gaps= 0 total=380 Number of alignments=43 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f9wA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313/1f9wA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0313/1f9wA/merged-good-all-a2m.gz for input Trying 1f9wA/merged-good-all-a2m Error: Couldn't open file 1f9wA/merged-good-all-a2m or 1f9wA/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)G233.CA) [> 3.4847 = 5.8078 < 7.5501] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)L231.CB) [> 4.2538 = 7.0897 < 9.2166] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)S234.CB) [> 3.7750 = 6.2917 < 8.1792] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)L231.CB) [> 3.1488 = 5.2480 < 6.8224] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)L231.CB) [> 3.5961 = 5.9935 < 7.7916] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)D230.CB) [> 3.1090 = 5.1817 < 6.7362] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V229.CB) [> 4.0475 = 6.7459 < 8.7696] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)M94.CB) [> 2.9750 = 4.9584 < 6.4460] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)T93.CB) [> 3.2270 = 5.3783 < 6.9918] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)T91.CB) [> 4.5505 = 7.5842 < 9.8595] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L231.CB) [> 3.5666 = 5.9444 < 7.7277] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)V229.CB) [> 2.7021 = 4.5034 < 5.8545] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)V229.CB) [> 4.0860 = 6.8100 < 8.8530] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L228.CB) [> 3.1829 = 5.3049 < 6.8964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)N227.CB) [> 4.3800 = 7.2999 < 9.4899] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)I103.CB) [> 3.8875 = 6.4791 < 8.4229] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)V229.CB) [> 4.0477 = 6.7461 < 8.7700] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)N227.CB) [> 2.7220 = 4.5367 < 5.8978] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)N227.CB) [> 4.2830 = 7.1383 < 9.2798] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)L226.CB) [> 2.9825 = 4.9708 < 6.4620] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)K225.CB) [> 4.4522 = 7.4203 < 9.6464] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)K225.CB) [> 2.9124 = 4.8540 < 6.3101] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)I178.CB) [> 2.8967 = 4.8279 < 6.2763] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V175.CB) [> 3.4797 = 5.7994 < 7.5392] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)L228.CB) [> 4.2600 = 7.1000 < 9.2300] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)L226.CB) [> 4.2255 = 7.0425 < 9.1553] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)L228.CB) [> 3.1944 = 5.3241 < 6.9213] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)L207.CB) [> 3.5047 = 5.8412 < 7.5935] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)F182.CB) [> 4.1115 = 6.8524 < 8.9081] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)Q105.CB) [> 4.2702 = 7.1171 < 9.2522] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)N104.CB) [> 3.4104 = 5.6839 < 7.3891] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)D230.CB) [> 2.8164 = 4.6940 < 6.1023] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)L228.CB) [> 3.7281 = 6.2135 < 8.0776] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)N104.CB) [> 3.4873 = 5.8121 < 7.5558] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)I103.CB) [> 3.2340 = 5.3900 < 7.0069] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)I103.CB) [> 3.8222 = 6.3704 < 8.2815] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)G102.CA) [> 3.9200 = 6.5333 < 8.4932] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)G102.CA) [> 4.4570 = 7.4283 < 9.6568] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)D230.CB) [> 3.5342 = 5.8904 < 7.6575] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)G233.CA) [> 4.3602 = 7.2670 < 9.4470] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)L231.CB) [> 3.9521 = 6.5868 < 8.5628] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)D230.CB) [> 3.3092 = 5.5154 < 7.1700] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)G233.CA) [> 3.5801 = 5.9669 < 7.7569] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)S234.CB) [> 2.6802 = 4.4670 < 5.8071] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F52.CB, (T0313)V61.CB) [> 3.6698 = 6.1163 < 7.9512] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)Y92.CB) [> 4.3258 = 7.2097 < 9.3726] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)G89.CA) [> 3.2124 = 5.3539 < 6.9601] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)A88.CB) [> 3.8800 = 6.4668 < 8.4068] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)F52.CB) [> 4.1061 = 6.8435 < 8.8965] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)T93.CB) [> 3.7507 = 6.2512 < 8.1266] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V61.CB) [> 4.0632 = 6.7720 < 8.8035] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)A56.CB) [> 4.0418 = 6.7363 < 8.7572] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)F52.CB) [> 2.4964 = 4.1607 < 5.4089] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)F52.CB) [> 4.0550 = 6.7583 < 8.7858] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V51.CB) [> 2.9915 = 4.9858 < 6.4816] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)K50.CB) [> 4.4387 = 7.3979 < 9.6173] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)L48.CB) [> 3.0516 = 5.0860 < 6.6118] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)F46.CB) [> 4.4911 = 7.4852 < 9.7307] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)F52.CB) [> 3.9333 = 6.5555 < 8.5222] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V51.CB) [> 4.3858 = 7.3097 < 9.5026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)K50.CB) [> 2.6739 = 4.4565 < 5.7934] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)D49.CB) [> 3.5936 = 5.9893 < 7.7861] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)L48.CB) [> 3.6635 = 6.1059 < 7.9376] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)D49.CB) [> 3.3566 = 5.5943 < 7.2726] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)L48.CB) [> 3.0564 = 5.0941 < 6.6223] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)D49.CB) [> 2.7268 = 4.5446 < 5.9080] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)G224.CA) [> 3.4523 = 5.7538 < 7.4799] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)G224.CA) [> 3.8245 = 6.3742 < 8.2865] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)G224.CA) [> 2.7342 = 4.5569 < 5.9240] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)T223.CB) [> 3.8459 = 6.4098 < 8.3327] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)E114.CB) [> 3.6949 = 6.1582 < 8.0057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)L226.CB) [> 3.0702 = 5.1171 < 6.6522] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)G224.CA) [> 3.0269 = 5.0449 < 6.5584] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)V211.CB) [> 3.4582 = 5.7637 < 7.4928] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L226.CB) [> 4.2488 = 7.0813 < 9.2057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L111.CB) [> 3.8886 = 6.4810 < 8.4253] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L110.CB) [> 3.4220 = 5.7033 < 7.4143] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)A107.CB) [> 3.3960 = 5.6600 < 7.3580] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)V78.CB) [> 4.4848 = 7.4746 < 9.7170] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)I80.CB) [> 4.0129 = 6.6881 < 8.6946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)V78.CB) [> 2.8773 = 4.7955 < 6.2341] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)I80.CB) [> 4.1239 = 6.8732 < 8.9352] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)I103.CB) [> 3.5232 = 5.8720 < 7.6336] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)G102.CA) [> 4.2325 = 7.0541 < 9.1704] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V61.CB, (T0313)T93.CB) [> 3.9214 = 6.5357 < 8.4964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)G102.CA) [> 2.9862 = 4.9771 < 6.4702] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)D230.CB) [> 4.2051 = 7.0086 < 9.1111] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)V229.CB) [> 3.8901 = 6.4834 < 8.4285] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S203.CB, (T0313)A232.CB) [> 3.4166 = 5.6943 < 7.4026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)V181.CB) [> 3.9701 = 6.6168 < 8.6019] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)F170.CB) [> 3.7105 = 6.1841 < 8.0393] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)T168.CB) [> 2.6476 = 4.4126 < 5.7364] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)A205.CB) [> 4.4984 = 7.4973 < 9.7464] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)G185.CA) [> 2.7020 = 4.5033 < 5.8543] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)T168.CB) [> 3.3227 = 5.5378 < 7.1991] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)L167.CB) [> 3.2154 = 5.3590 < 6.9667] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)G166.CA) [> 4.3970 = 7.3284 < 9.5269] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)V164.CB) [> 3.6901 = 6.1502 < 7.9952] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)L206.CB) [> 4.2708 = 7.1180 < 9.2534] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)H204.CB) [> 2.5085 = 4.1809 < 5.4352] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)S203.CB) [> 3.6950 = 6.1583 < 8.0057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)A205.CB) [> 3.1552 = 5.2586 < 6.8362] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)H204.CB) [> 3.9534 = 6.5890 < 8.5657] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)S203.CB) [> 3.0426 = 5.0710 < 6.5923] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L206.CB) [> 3.2642 = 5.4403 < 7.0724] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L167.CB) [> 3.6437 = 6.0728 < 7.8946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G213.CA, (T0313)T222.CB) [> 3.1488 = 5.2480 < 6.8224] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V211.CB, (T0313)K225.CB) [> 4.4240 = 7.3734 < 9.5854] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)K225.CB) [> 2.9956 = 4.9926 < 6.4904] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)G224.CA) [> 3.8991 = 6.4985 < 8.4481] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)L228.CB) [> 4.5051 = 7.5086 < 9.7611] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)L226.CB) [> 2.6732 = 4.4553 < 5.7920] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)K225.CB) [> 4.1873 = 6.9788 < 9.0725] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)N227.CB) [> 3.1732 = 5.2888 < 6.8754] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)L226.CB) [> 4.2325 = 7.0541 < 9.1703] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)K225.CB) [> 3.8476 = 6.4127 < 8.3365] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)L228.CB) [> 2.6170 = 4.3617 < 5.6703] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)N227.CB) [> 4.3734 = 7.2889 < 9.4756] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)V229.CB) [> 3.0455 = 5.0759 < 6.5986] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L228.CB) [> 4.3710 = 7.2851 < 9.4706] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)N227.CB) [> 3.5827 = 5.9711 < 7.7625] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A205.CB, (T0313)D230.CB) [> 2.5396 = 4.2327 < 5.5026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A205.CB, (T0313)V229.CB) [> 4.2235 = 7.0392 < 9.1510] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)A232.CB) [> 3.2039 = 5.3398 < 6.9418] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)L231.CB) [> 3.2799 = 5.4666 < 7.1065] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)V172.CB) [> 4.2647 = 7.1078 < 9.2401] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)Q171.CB) [> 3.1962 = 5.3269 < 6.9250] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)F170.CB) [> 3.9720 = 6.6199 < 8.6059] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)E169.CB) [> 2.9720 = 4.9534 < 6.4394] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V211.CB) [> 3.2978 = 5.4963 < 7.1451] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)T210.CB) [> 4.2031 = 7.0052 < 9.1067] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V209.CB) [> 3.7256 = 6.2094 < 8.0722] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V172.CB) [> 2.9910 = 4.9850 < 6.4805] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)Q171.CB) [> 4.2858 = 7.1430 < 9.2859] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)G213.CA) [> 4.0913 = 6.8189 < 8.8645] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)R212.CB) [> 2.7612 = 4.6020 < 5.9825] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)Q171.CB) [> 4.0049 = 6.6748 < 8.6773] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)G213.CA) [> 2.9421 = 4.9035 < 6.3746] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)R212.CB) [> 4.0129 = 6.6882 < 8.6947] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)V211.CB) [> 3.8745 = 6.4575 < 8.3947] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)G213.CA) [> 3.8570 = 6.4284 < 8.3569] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)Y124.CB) [> 3.0289 = 5.0481 < 6.5625] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)S174.CB) [> 3.9068 = 6.5113 < 8.4647] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)V209.CB) [> 4.3735 = 7.2892 < 9.4760] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)I126.CB) [> 3.9867 = 6.6445 < 8.6378] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q109.CB, (T0313)V175.CB) [> 3.2003 = 5.3339 < 6.9341] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L141.CB) [> 3.6850 = 6.1417 < 7.9842] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)D140.CB) [> 3.4790 = 5.7984 < 7.5379] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)I208.CB) [> 4.5024 = 7.5040 < 9.7552] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L207.CB) [> 3.1706 = 5.2842 < 6.8695] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L206.CB) [> 4.4870 = 7.4784 < 9.7219] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L142.CB) [> 3.0785 = 5.1308 < 6.6701] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L141.CB) [> 2.6116 = 4.3526 < 5.6584] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)D140.CB) [> 4.5371 = 7.5619 < 9.8305] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)I208.CB) [> 2.7390 = 4.5650 < 5.9345] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L207.CB) [> 4.5767 = 7.6278 < 9.9162] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)F170.CB) [> 4.5438 = 7.5729 < 9.8448] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)T210.CB) [> 2.8603 = 4.7671 < 6.1973] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)E169.CB) [> 4.2859 = 7.1432 < 9.2861] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)F170.CB) [> 3.3676 = 5.6126 < 7.2964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)V172.CB) [> 3.4591 = 5.7651 < 7.4946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)L207.CB) [> 4.2297 = 7.0495 < 9.1643] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)I208.CB) [> 3.9356 = 6.5593 < 8.5271] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)V209.CB) [> 3.1861 = 5.3102 < 6.9033] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)T210.CB) [> 4.5372 = 7.5621 < 9.8307] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L142.CB) [> 4.1324 = 6.8874 < 8.9536] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L167.CB) [> 3.2569 = 5.4282 < 7.0566] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)T168.CB) [> 3.9482 = 6.5803 < 8.5543] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)E169.CB) [> 3.0995 = 5.1658 < 6.7155] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)I103.CB) [> 3.5975 = 5.9959 < 7.7947] w=0.9738 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)V214.CB) [> 4.1930 = 6.9883 < 9.0848] w=0.9738 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)V214.CB) [> 2.9076 = 4.8460 < 6.2998] w=0.9738 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)F276.CB) [> 3.7802 = 6.3003 < 8.1904] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)P275.CB) [> 3.7489 = 6.2481 < 8.1226] w=0.9552 to align # Constraint # added constraint: constraint((T0313)D262.CB, (T0313)P275.CB) [> 3.3393 = 5.5654 < 7.2351] w=0.9552 to align # Constraint # added constraint: constraint((T0313)G261.CA, (T0313)F317.CB) [> 4.2506 = 7.0844 < 9.2098] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)T282.CB) [> 3.4662 = 5.7770 < 7.5101] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)L281.CB) [> 3.7145 = 6.1908 < 8.0480] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)S279.CB) [> 4.2710 = 7.1183 < 9.2538] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)T282.CB) [> 3.0592 = 5.0987 < 6.6283] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)L281.CB) [> 4.2389 = 7.0648 < 9.1842] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)S279.CB) [> 2.2454 = 3.7424 < 4.8651] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)N278.CB) [> 2.5586 = 4.2643 < 5.5436] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)P275.CB) [> 3.8072 = 6.3453 < 8.2489] w=0.9552 to align # Constraint # added constraint: constraint((T0313)S256.CB, (T0313)L281.CB) [> 2.5678 = 4.2797 < 5.5636] w=0.9552 to align # Constraint # added constraint: constraint((T0313)S302.CB, (T0313)T311.CB) [> 3.5875 = 5.9792 < 7.7729] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V301.CB, (T0313)L315.CB) [> 4.1835 = 6.9725 < 9.0642] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V301.CB, (T0313)S314.CB) [> 3.3812 = 5.6354 < 7.3260] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)A318.CB) [> 2.5752 = 4.2920 < 5.5796] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)F317.CB) [> 4.2751 = 7.1252 < 9.2627] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)L315.CB) [> 4.1727 = 6.9546 < 9.0409] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)S314.CB) [> 3.1923 = 5.3205 < 6.9167] w=0.9552 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)L289.CB) [> 4.4161 = 7.3602 < 9.5682] w=0.9552 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)Q286.CB) [> 2.6157 = 4.3595 < 5.6673] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)L289.CB) [> 3.8166 = 6.3610 < 8.2693] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A265.CB, (T0313)R320.CB) [> 3.7321 = 6.2202 < 8.0863] w=0.9552 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)V321.CB) [> 3.1289 = 5.2148 < 6.7793] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)L289.CB) [> 3.5921 = 5.9868 < 7.7829] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)T282.CB) [> 2.9451 = 4.9085 < 6.3810] w=0.9552 to align # Constraint # added constraint: constraint((T0313)Q66.CB, (T0313)L110.CB) [> 3.9609 = 6.6016 < 8.5820] w=0.9476 to align # Constraint # added constraint: constraint((T0313)K50.CB, (T0313)E64.CB) [> 3.7797 = 6.2995 < 8.1893] w=0.9476 to align # Constraint # added constraint: constraint((T0313)K255.CB, (T0313)S279.CB) [> 3.2912 = 5.4854 < 7.1310] w=0.9473 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L296.CB) [> 2.8498 = 4.7496 < 6.1745] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)T295.CB) [> 4.5666 = 7.6111 < 9.8944] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L296.CB) [> 4.2650 = 7.1084 < 9.2409] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)T295.CB) [> 2.7716 = 4.6193 < 6.0051] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)S293.CB) [> 3.8440 = 6.4068 < 8.3288] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)S288.CB) [> 2.7361 = 4.5602 < 5.9283] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L285.CB) [> 3.8354 = 6.3922 < 8.3099] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)T295.CB) [> 4.3489 = 7.2482 < 9.4227] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)K294.CB) [> 3.0074 = 5.0123 < 6.5160] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)S293.CB) [> 3.8785 = 6.4642 < 8.4034] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)S293.CB) [> 2.6770 = 4.4616 < 5.8001] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)D287.CB) [> 3.8651 = 6.4419 < 8.3745] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)K294.CB) [> 3.6374 = 6.0623 < 7.8810] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)S293.CB) [> 4.0099 = 6.6832 < 8.6881] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)T222.CB) [> 2.7275 = 4.5459 < 5.9096] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S71.CB, (T0313)K294.CB) [> 3.2722 = 5.4536 < 7.0897] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)L296.CB) [> 3.7655 = 6.2759 < 8.1587] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)S314.CB) [> 2.9398 = 4.8997 < 6.3696] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)Q300.CB) [> 2.9706 = 4.9510 < 6.4363] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)V299.CB) [> 3.6361 = 6.0601 < 7.8781] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)F317.CB) [> 4.1778 = 6.9630 < 9.0519] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)S314.CB) [> 4.1174 = 6.8623 < 8.9210] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)Q300.CB) [> 4.1802 = 6.9671 < 9.0572] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)V299.CB) [> 3.0430 = 5.0717 < 6.5931] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)V298.CB) [> 4.1153 = 6.8588 < 8.9164] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)M297.CB) [> 3.5393 = 5.8988 < 7.6684] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)Q300.CB) [> 3.8084 = 6.3473 < 8.2515] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V298.CB) [> 3.0797 = 5.1328 < 6.6727] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)V298.CB) [> 4.0658 = 6.7764 < 8.8094] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)M297.CB) [> 2.9202 = 4.8671 < 6.3272] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L296.CB) [> 4.2965 = 7.1608 < 9.3090] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)T295.CB) [> 4.4843 = 7.4738 < 9.7159] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)V298.CB) [> 4.1393 = 6.8988 < 8.9684] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V301.CB) [> 3.8026 = 6.3376 < 8.2389] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V299.CB) [> 2.9133 = 4.8556 < 6.3123] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V298.CB) [> 4.6248 = 7.7080 < 10.0204] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V299.CB) [> 4.1384 = 6.8973 < 8.9665] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V298.CB) [> 2.9465 = 4.9108 < 6.3841] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)M297.CB) [> 4.2137 = 7.0227 < 9.1296] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)L296.CB) [> 4.1033 = 6.8389 < 8.8905] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V321.CB) [> 3.3484 = 5.5807 < 7.2549] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)A318.CB) [> 3.0876 = 5.1460 < 6.6898] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V299.CB) [> 4.0173 = 6.6954 < 8.7040] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)M297.CB) [> 2.9288 = 4.8814 < 6.3458] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)M297.CB) [> 4.3390 = 7.2318 < 9.4013] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)L296.CB) [> 2.9497 = 4.9161 < 6.3910] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)T295.CB) [> 4.3976 = 7.3292 < 9.5280] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)V321.CB) [> 3.9603 = 6.6005 < 8.5807] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)M297.CB) [> 4.1327 = 6.8878 < 8.9542] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)T295.CB) [> 2.7354 = 4.5591 < 5.9268] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)K294.CB) [> 3.5755 = 5.9592 < 7.7470] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)A318.CB) [> 3.9226 = 6.5377 < 8.4990] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)E319.CB) [> 3.3708 = 5.6179 < 7.3033] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)A318.CB) [> 4.3132 = 7.1887 < 9.3453] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)L315.CB) [> 2.9606 = 4.9344 < 6.4147] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)S302.CB) [> 3.9086 = 6.5144 < 8.4687] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)V301.CB) [> 4.4367 = 7.3946 < 9.6130] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)Q300.CB) [> 4.0282 = 6.7136 < 8.7277] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V301.CB) [> 3.1327 = 5.2211 < 6.7875] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V301.CB) [> 4.2442 = 7.0736 < 9.1957] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)Q300.CB) [> 3.2128 = 5.3546 < 6.9610] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V299.CB) [> 4.2885 = 7.1476 < 9.2918] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V298.CB) [> 3.5772 = 5.9620 < 7.7506] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)G89.CA) [> 4.4413 = 7.4022 < 9.6228] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)A318.CB) [> 3.7727 = 6.2879 < 8.1742] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)L315.CB) [> 4.1943 = 6.9905 < 9.0877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)G233.CA) [> 4.3512 = 7.2520 < 9.4276] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)A232.CB) [> 3.2469 = 5.4115 < 7.0349] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S201.CB, (T0313)G233.CA) [> 3.3695 = 5.6159 < 7.3007] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S201.CB, (T0313)A232.CB) [> 4.0587 = 6.7644 < 8.7938] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V172.CB, (T0313)V181.CB) [> 4.1123 = 6.8539 < 8.9101] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F170.CB, (T0313)V181.CB) [> 3.6427 = 6.0711 < 7.8924] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V164.CB, (T0313)L284.CB) [> 4.2717 = 7.1194 < 9.2553] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)P165.CB) [> 3.0592 = 5.0986 < 6.6282] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)V164.CB) [> 4.4546 = 7.4243 < 9.6516] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)V164.CB) [> 3.1588 = 5.2646 < 6.8440] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)I152.CB) [> 2.7489 = 4.5815 < 5.9560] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)H204.CB) [> 4.6033 = 7.6721 < 9.9738] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)R202.CB) [> 4.0531 = 6.7551 < 8.7817] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)S314.CB) [> 3.6499 = 6.0832 < 7.9082] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)Y313.CB) [> 4.1310 = 6.8850 < 8.9506] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)E310.CB) [> 4.3327 = 7.2211 < 9.3874] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)L257.CB) [> 3.8056 = 6.3426 < 8.2454] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)S256.CB) [> 4.3651 = 7.2751 < 9.4577] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L260.CB) [> 4.5503 = 7.5838 < 9.8589] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L257.CB) [> 4.0630 = 6.7717 < 8.8033] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N227.CB, (T0313)S288.CB) [> 3.4144 = 5.6906 < 7.3977] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R212.CB, (T0313)G224.CA) [> 4.5303 = 7.5506 < 9.8157] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)T223.CB) [> 4.0592 = 6.7654 < 8.7950] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)L228.CB) [> 4.5630 = 7.6049 < 9.8864] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)V229.CB) [> 4.5686 = 7.6144 < 9.8987] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L284.CB) [> 4.2753 = 7.1255 < 9.2631] w=0.9213 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)L281.CB) [> 3.4097 = 5.6828 < 7.3877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)D230.CB) [> 4.3016 = 7.1694 < 9.3202] w=0.9213 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)V229.CB) [> 4.6698 = 7.7831 < 10.1180] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)Q300.CB) [> 3.7044 = 6.1741 < 8.0263] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)V298.CB) [> 3.4968 = 5.8279 < 7.5763] w=0.9213 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)Q300.CB) [> 3.1097 = 5.1829 < 6.7378] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G89.CA, (T0313)Q300.CB) [> 2.5884 = 4.3140 < 5.6082] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)S302.CB) [> 3.0635 = 5.1059 < 6.6376] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)V301.CB) [> 3.3208 = 5.5347 < 7.1951] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)Q300.CB) [> 2.2676 = 3.7793 < 4.9131] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)S302.CB) [> 4.1182 = 6.8637 < 8.9228] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)G233.CA) [> 2.8676 = 4.7793 < 6.2131] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)S314.CB) [> 3.7625 = 6.2708 < 8.1521] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)E310.CB) [> 2.5693 = 4.2821 < 5.5668] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)S302.CB) [> 3.9952 = 6.6586 < 8.6562] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)L281.CB) [> 3.3907 = 5.6511 < 7.3464] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)K280.CB) [> 3.4057 = 5.6761 < 7.3790] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)S256.CB) [> 3.9550 = 6.5917 < 8.5693] w=0.9213 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)L206.CB) [> 4.4468 = 7.4114 < 9.6348] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)V164.CB) [> 4.0000 = 6.6667 < 8.6667] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)A205.CB) [> 4.4390 = 7.3983 < 9.6178] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)G185.CA) [> 3.4014 = 5.6689 < 7.3696] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)V209.CB) [> 4.4450 = 7.4084 < 9.6309] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)R212.CB) [> 4.5475 = 7.5791 < 9.8528] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)V211.CB) [> 4.5123 = 7.5205 < 9.7766] w=0.9213 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)D215.CB) [> 3.2357 = 5.3928 < 7.0107] w=0.9213 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)G213.CA) [> 3.6496 = 6.0826 < 7.9074] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)V211.CB) [> 4.0559 = 6.7598 < 8.7877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)N179.CB) [> 4.1076 = 6.8460 < 8.8999] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I103.CB, (T0313)L228.CB) [> 3.8600 = 6.4333 < 8.3632] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R268.CB, (T0313)V321.CB) [> 4.0812 = 6.8020 < 8.8427] w=0.9028 to align # Constraint # added constraint: constraint((T0313)G96.CA, (T0313)Q105.CB) [> 4.4659 = 7.4431 < 9.6761] w=0.8951 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)G96.CA) [> 4.0486 = 6.7477 < 8.7720] w=0.8951 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)F46.CB) [> 3.5967 = 5.9945 < 7.7929] w=0.8951 to align # Constraint # added constraint: constraint((T0313)M297.CB, (T0313)V321.CB) [> 3.5366 = 5.8943 < 7.6625] w=0.8765 to align # Constraint # added constraint: constraint((T0313)A266.CB, (T0313)P275.CB) [> 4.1256 = 6.8760 < 8.9388] w=0.8765 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)V274.CB) [> 3.3387 = 5.5645 < 7.2339] w=0.8765 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)E47.CB) [> 3.3023 = 5.5038 < 7.1550] w=0.8689 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)V51.CB) [> 3.6371 = 6.0619 < 7.8804] w=0.8689 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)S45.CB) [> 4.0330 = 6.7217 < 8.7381] w=0.8689 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)F46.CB) [> 4.0854 = 6.8091 < 8.8518] w=0.8689 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)Y163.CB) [> 4.4095 = 7.3492 < 9.5540] w=0.8689 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)L226.CB) [> 4.5224 = 7.5373 < 9.7985] w=0.8654 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)M94.CB) [> 4.5860 = 7.6434 < 9.9364] w=0.8427 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)K294.CB) [> 4.4580 = 7.4300 < 9.6590] w=0.8427 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)S288.CB) [> 3.1390 = 5.2317 < 6.8012] w=0.8427 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)V211.CB) [> 4.0191 = 6.6985 < 8.7081] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)P101.CB) [> 3.4345 = 5.7242 < 7.4415] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V44.CB, (T0313)L315.CB) [> 4.4653 = 7.4421 < 9.6747] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V44.CB, (T0313)L312.CB) [> 3.9123 = 6.5204 < 8.4765] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)V304.CB) [> 4.0527 = 6.7545 < 8.7809] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)P303.CB) [> 3.5883 = 5.9805 < 7.7746] w=0.8427 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)P303.CB) [> 4.3143 = 7.1905 < 9.3477] w=0.8427 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)P303.CB) [> 4.0338 = 6.7231 < 8.7400] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)P303.CB) [> 3.2092 = 5.3486 < 6.9532] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V211.CB, (T0313)L226.CB) [> 4.2440 = 7.0733 < 9.1953] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)L284.CB) [> 3.4720 = 5.7866 < 7.5226] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)R189.CB) [> 3.5621 = 5.9368 < 7.7178] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)N188.CB) [> 2.9898 = 4.9830 < 6.4778] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)L167.CB) [> 4.4865 = 7.4774 < 9.7207] w=0.8427 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)S256.CB) [> 4.1768 = 6.9614 < 9.0498] w=0.8427 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)R189.CB) [> 3.9521 = 6.5868 < 8.5628] w=0.8427 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)A205.CB) [> 4.5233 = 7.5389 < 9.8006] w=0.8427 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)V181.CB) [> 4.0262 = 6.7103 < 8.7234] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)I178.CB) [> 3.9140 = 6.5233 < 8.4803] w=0.8427 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)R212.CB) [> 4.4365 = 7.3941 < 9.6123] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)F182.CB) [> 4.2079 = 7.0131 < 9.1170] w=0.8427 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)S201.CB) [> 2.7093 = 4.5155 < 5.8701] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)V301.CB) [> 4.6094 = 7.6823 < 9.9870] w=0.8427 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)M297.CB) [> 4.6390 = 7.7317 < 10.0512] w=0.8427 to align # Constraint # added constraint: constraint((T0313)M297.CB, (T0313)A318.CB) [> 3.9337 = 6.5561 < 8.5230] w=0.8206 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)L48.CB) [> 4.4799 = 7.4666 < 9.7065] w=0.8164 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)S45.CB) [> 3.4689 = 5.7815 < 7.5159] w=0.8164 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)V214.CB) [> 4.3848 = 7.3080 < 9.5004] w=0.8164 to align # Constraint # added constraint: constraint((T0313)R212.CB, (T0313)R221.CB) [> 4.1378 = 6.8964 < 8.9653] w=0.8164 to align # Constraint # added constraint: constraint((T0313)D30.CB, (T0313)E47.CB) [> 3.6537 = 6.0895 < 7.9164] w=0.8053 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)I34.CB) [> 3.9173 = 6.5288 < 8.4875] w=0.8053 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)I35.CB) [> 3.4507 = 5.7512 < 7.4765] w=0.7978 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)E20.CB) [> 3.7039 = 6.1732 < 8.0252] w=0.7978 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)L48.CB) [> 4.1602 = 6.9337 < 9.0139] w=0.7902 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)L296.CB) [> 4.2687 = 7.1144 < 9.2488] w=0.7867 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)L296.CB) [> 4.5171 = 7.5285 < 9.7871] w=0.7867 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L226.CB) [> 4.4803 = 7.4672 < 9.7073] w=0.7867 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)F182.CB) [> 4.3772 = 7.2953 < 9.4839] w=0.7867 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V209.CB) [> 4.3915 = 7.3192 < 9.5150] w=0.7867 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)S200.CB) [> 3.9689 = 6.6148 < 8.5993] w=0.7867 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)S33.CB) [> 4.1469 = 6.9115 < 8.9850] w=0.7791 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)I152.CB) [> 4.4176 = 7.3626 < 9.5714] w=0.7791 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)L154.CB) [> 4.0661 = 6.7768 < 8.8098] w=0.7791 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)I152.CB) [> 3.7568 = 6.2614 < 8.1398] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)P165.CB) [> 3.6756 = 6.1261 < 7.9639] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)G166.CA) [> 3.6281 = 6.0468 < 7.8608] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)L167.CB) [> 3.4908 = 5.8180 < 7.5634] w=0.7791 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)V164.CB) [> 3.4496 = 5.7494 < 7.4742] w=0.7791 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)V211.CB) [> 4.5746 = 7.6244 < 9.9117] w=0.7640 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)K225.CB) [> 4.1673 = 6.9455 < 9.0292] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V61.CB, (T0313)G102.CA) [> 4.5428 = 7.5713 < 9.8427] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)I34.CB) [> 3.9228 = 6.5380 < 8.4994] w=0.7640 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)P54.CB) [> 2.4540 = 4.0900 < 5.3170] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)P54.CB) [> 3.7824 = 6.3039 < 8.1951] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)S53.CB) [> 3.4551 = 5.7585 < 7.4861] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V51.CB) [> 4.6797 = 7.7995 < 10.1393] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)K50.CB) [> 4.5473 = 7.5789 < 9.8526] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V229.CB, (T0313)L285.CB) [> 4.3899 = 7.3166 < 9.5115] w=0.7640 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L285.CB) [> 4.5337 = 7.5561 < 9.8230] w=0.7640 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)D230.CB) [> 4.6266 = 7.7109 < 10.0242] w=0.7640 to align # Constraint # added constraint: constraint((T0313)G143.CA, (T0313)N188.CB) [> 4.2598 = 7.0996 < 9.2295] w=0.7640 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)S279.CB) [> 4.1556 = 6.9259 < 9.0037] w=0.7640 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)Q300.CB) [> 4.5697 = 7.6162 < 9.9010] w=0.7640 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)E235.CB) [> 2.6249 = 4.3748 < 5.6872] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)L296.CB) [> 4.5795 = 7.6325 < 9.9223] w=0.7640 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)P303.CB) [> 4.0579 = 6.7632 < 8.7922] w=0.7529 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)T22.CB) [> 4.1952 = 6.9921 < 9.0897] w=0.7529 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)C216.CB) [> 4.2587 = 7.0979 < 9.2272] w=0.7378 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)P165.CB) [> 4.5421 = 7.5701 < 9.8412] w=0.7342 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)I152.CB) [> 4.2504 = 7.0840 < 9.2091] w=0.7267 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)A24.CB) [> 3.1677 = 5.2795 < 6.8633] w=0.7267 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)N278.CB) [> 4.5039 = 7.5064 < 9.7584] w=0.7192 to align # Constraint # added constraint: constraint((T0313)S256.CB, (T0313)T282.CB) [> 4.1776 = 6.9626 < 9.0514] w=0.7192 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)F317.CB) [> 4.1599 = 6.9331 < 9.0130] w=0.7080 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)L226.CB) [> 4.6501 = 7.7502 < 10.0752] w=0.7080 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)D230.CB) [> 4.5811 = 7.6351 < 9.9257] w=0.7080 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)S200.CB) [> 4.5246 = 7.5410 < 9.8033] w=0.7080 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)A107.CB) [> 4.4281 = 7.3801 < 9.5942] w=0.7080 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)Q300.CB) [> 4.6883 = 7.8138 < 10.1580] w=0.7080 to align # Constraint # added constraint: constraint((T0313)C155.CB, (T0313)P165.CB) [> 3.3910 = 5.6517 < 7.3472] w=0.7005 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)L284.CB) [> 3.7738 = 6.2897 < 8.1766] w=0.7005 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)Y283.CB) [> 3.8063 = 6.3438 < 8.2469] w=0.7005 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)V51.CB) [> 3.3400 = 5.5666 < 7.2365] w=0.7005 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)F46.CB) [> 4.5233 = 7.5388 < 9.8004] w=0.6929 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)S302.CB) [> 4.5009 = 7.5015 < 9.7519] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)V299.CB) [> 4.6841 = 7.8068 < 10.1488] w=0.6853 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)E114.CB) [> 4.3647 = 7.2745 < 9.4569] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)L111.CB) [> 4.3696 = 7.2827 < 9.4675] w=0.6853 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)D292.CB) [> 3.8306 = 6.3843 < 8.2997] w=0.6853 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)G224.CA) [> 4.6172 = 7.6953 < 10.0039] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L226.CB) [> 4.4781 = 7.4634 < 9.7025] w=0.6853 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)A205.CB) [> 4.7169 = 7.8616 < 10.2200] w=0.6853 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)V209.CB) [> 4.2791 = 7.1318 < 9.2714] w=0.6853 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)V164.CB) [> 4.4461 = 7.4102 < 9.6333] w=0.6853 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)T210.CB) [> 4.7179 = 7.8632 < 10.2222] w=0.6853 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)F182.CB) [> 4.3366 = 7.2277 < 9.3960] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)F184.CB) [> 4.5946 = 7.6577 < 9.9550] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)Y283.CB) [> 3.5805 = 5.9675 < 7.7577] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)Q286.CB) [> 3.8565 = 6.4276 < 8.3558] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)D287.CB) [> 3.8188 = 6.3647 < 8.2741] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)L289.CB) [> 4.4033 = 7.3388 < 9.5404] w=0.6632 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)L296.CB) [> 3.7450 = 6.2416 < 8.1141] w=0.6591 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)A107.CB) [> 3.8011 = 6.3351 < 8.2357] w=0.6591 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)K280.CB) [> 3.5855 = 5.9758 < 7.7685] w=0.6480 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)T311.CB) [> 4.6162 = 7.6937 < 10.0019] w=0.6480 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)T308.CB) [> 3.7213 = 6.2021 < 8.0627] w=0.6480 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)P303.CB) [> 2.7745 = 4.6242 < 6.0114] w=0.6404 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)V304.CB) [> 4.3627 = 7.2712 < 9.4525] w=0.6404 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)R322.CB) [> 3.0311 = 5.0518 < 6.5674] w=0.6294 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)T311.CB) [> 4.3169 = 7.1949 < 9.3534] w=0.6294 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L228.CB) [> 4.6055 = 7.6758 < 9.9786] w=0.6294 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)V298.CB) [> 4.6773 = 7.7954 < 10.1341] w=0.6294 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)I126.CB) [> 4.5800 = 7.6333 < 9.9233] w=0.6294 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)I208.CB) [> 4.5173 = 7.5288 < 9.7874] w=0.6294 to align # Constraint # added constraint: constraint((T0313)S258.CB, (T0313)S279.CB) [> 4.6406 = 7.7344 < 10.0547] w=0.6145 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)I264.CB) [> 3.8351 = 6.3919 < 8.3094] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)L267.CB) [> 3.7791 = 6.2985 < 8.1880] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V61.CB) [> 4.5814 = 7.6357 < 9.9265] w=0.6067 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)V304.CB) [> 4.4641 = 7.4402 < 9.6723] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)V44.CB) [> 3.7179 = 6.1964 < 8.0554] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)V115.CB) [> 4.5077 = 7.5128 < 9.7666] w=0.6067 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)Q300.CB) [> 4.6332 = 7.7221 < 10.0387] w=0.6067 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)N179.CB) [> 3.9372 = 6.5621 < 8.5307] w=0.6067 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)I126.CB) [> 4.4819 = 7.4699 < 9.7108] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)A205.CB) [> 4.6872 = 7.8119 < 10.1555] w=0.6067 to align # Constraint # added constraint: constraint((T0313)F182.CB, (T0313)L207.CB) [> 4.2792 = 7.1320 < 9.2716] w=0.6067 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)A205.CB) [> 4.1044 = 6.8407 < 8.8928] w=0.6067 to align # Constraint # added constraint: constraint((T0313)G233.CA, (T0313)L257.CB) [> 4.4466 = 7.4110 < 9.6343] w=0.6067 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)V301.CB) [> 3.8982 = 6.4970 < 8.4461] w=0.6031 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)R322.CB) [> 4.0656 = 6.7760 < 8.8088] w=0.6031 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)H36.CB) [> 3.5365 = 5.8942 < 7.6624] w=0.5956 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)V304.CB) [> 4.4358 = 7.3931 < 9.6110] w=0.5956 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)P303.CB) [> 2.8970 = 4.8284 < 6.2769] w=0.5956 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)R153.CB) [> 4.5413 = 7.5688 < 9.8394] w=0.5956 to align # Constraint # added constraint: constraint((T0313)V274.CB, (T0313)S290.CB) [> 4.0907 = 6.8179 < 8.8632] w=0.5846 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)K294.CB) [> 4.6064 = 7.6774 < 9.9806] w=0.5804 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)V44.CB) [> 3.9751 = 6.6251 < 8.6127] w=0.5693 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)F46.CB) [> 3.9926 = 6.6543 < 8.6506] w=0.5693 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)I34.CB) [> 3.4518 = 5.7531 < 7.4790] w=0.5693 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)T308.CB) [> 3.8255 = 6.3759 < 8.2886] w=0.5618 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)I35.CB) [> 4.1667 = 6.9446 < 9.0280] w=0.5542 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)H199.CB) [> 4.2321 = 7.0535 < 9.1695] w=0.5507 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)H186.CB) [> 4.7000 = 7.8333 < 10.1833] w=0.5507 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)H252.CB) [> 3.4179 = 5.6965 < 7.4054] w=0.5507 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)H252.CB) [> 3.3242 = 5.5403 < 7.2024] w=0.5507 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)L142.CB) [> 4.4400 = 7.4001 < 9.6201] w=0.5507 to align # Constraint # added constraint: constraint((T0313)C155.CB, (T0313)V164.CB) [> 4.5915 = 7.6525 < 9.9483] w=0.5431 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)I35.CB) [> 3.8714 = 6.4524 < 8.3882] w=0.5431 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V51.CB) [> 4.4500 = 7.4167 < 9.6417] w=0.5280 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)Q55.CB) [> 4.2998 = 7.1664 < 9.3163] w=0.5280 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)V51.CB) [> 3.9715 = 6.6191 < 8.6048] w=0.5280 to align # Constraint # added constraint: constraint((T0313)T70.CB, (T0313)E114.CB) [> 4.1681 = 6.9469 < 9.0310] w=0.5280 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)V209.CB) [> 4.5548 = 7.5913 < 9.8687] w=0.5280 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L289.CB) [> 3.7058 = 6.1763 < 8.0292] w=0.5280 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L260.CB) [> 4.5568 = 7.5946 < 9.8730] w=0.5280 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)E235.CB) [> 4.6900 = 7.8167 < 10.1618] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)I178.CB) [> 4.4264 = 7.3774 < 9.5906] w=0.5280 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)L167.CB) [> 4.6576 = 7.7627 < 10.0915] w=0.5280 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)I253.CB) [> 3.8535 = 6.4225 < 8.3492] w=0.5280 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)N227.CB) [> 4.7040 = 7.8400 < 10.1920] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)T295.CB) [> 4.2295 = 7.0491 < 9.1638] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)M297.CB) [> 4.2018 = 7.0030 < 9.1039] w=0.5280 to align # Constraint # added constraint: constraint((T0313)D49.CB, (T0313)R322.CB) [> 4.4917 = 7.4862 < 9.7320] w=0.5245 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)T308.CB) [> 3.6464 = 6.0773 < 7.9005] w=0.5169 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)S53.CB) [> 2.9828 = 4.9714 < 6.4628] w=0.5169 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)D32.CB) [> 4.4867 = 7.4779 < 9.7213] w=0.4907 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)E305.CB) [> 4.3907 = 7.3179 < 9.5133] w=0.4831 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)R322.CB) [> 4.2027 = 7.0044 < 9.1058] w=0.4720 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)L207.CB) [> 4.6135 = 7.6891 < 9.9958] w=0.4720 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V172.CB) [> 4.1553 = 6.9255 < 9.0031] w=0.4720 to align # Constraint # added constraint: constraint((T0313)L257.CB, (T0313)F317.CB) [> 4.6089 = 7.6815 < 9.9860] w=0.4720 to align # Constraint # added constraint: constraint((T0313)G261.CA, (T0313)R320.CB) [> 3.8699 = 6.4499 < 8.3849] w=0.4720 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)L312.CB) [> 3.7745 = 6.2909 < 8.1781] w=0.4644 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)L315.CB) [> 4.0562 = 6.7604 < 8.7885] w=0.4644 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)I178.CB) [> 4.4587 = 7.4311 < 9.6605] w=0.4493 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L281.CB) [> 4.5359 = 7.5599 < 9.8279] w=0.4493 to align # Constraint # added constraint: constraint((T0313)V229.CB, (T0313)L281.CB) [> 4.6194 = 7.6990 < 10.0087] w=0.4493 to align # Constraint # added constraint: constraint((T0313)V274.CB, (T0313)L289.CB) [> 4.2344 = 7.0573 < 9.1745] w=0.4493 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)C216.CB) [> 4.2933 = 7.1555 < 9.3021] w=0.4458 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)T26.CB) [> 3.6755 = 6.1259 < 7.9636] w=0.4458 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)S45.CB) [> 3.2303 = 5.3838 < 6.9989] w=0.4307 to align # Constraint # added constraint: constraint((T0313)N1.CB, (T0313)T295.CB) [> 4.0906 = 6.8177 < 8.8631] w=0.4307 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)R320.CB) [> 3.4402 = 5.7336 < 7.4537] w=0.4272 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)E47.CB) [> 3.3705 = 5.6175 < 7.3027] w=0.4231 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)L312.CB) [> 4.1365 = 6.8942 < 8.9624] w=0.4044 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)L48.CB) [> 4.1260 = 6.8767 < 8.9397] w=0.4044 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)L257.CB) [> 4.5883 = 7.6472 < 9.9414] w=0.3933 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)M297.CB) [> 4.7083 = 7.8472 < 10.2014] w=0.3933 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)V304.CB) [> 4.6233 = 7.7056 < 10.0172] w=0.3933 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)S302.CB) [> 4.5989 = 7.6649 < 9.9643] w=0.3933 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)Q300.CB) [> 4.7041 = 7.8401 < 10.1921] w=0.3933 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V298.CB) [> 4.7392 = 7.8986 < 10.2682] w=0.3933 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)I253.CB) [> 2.9054 = 4.8423 < 6.2950] w=0.3933 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)E249.CB) [> 3.3124 = 5.5207 < 7.1769] w=0.3933 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)E249.CB) [> 3.5945 = 5.9908 < 7.7881] w=0.3933 to align # Constraint # added constraint: constraint((T0313)I103.CB, (T0313)V298.CB) [> 4.6658 = 7.7764 < 10.1093] w=0.3933 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)E151.CB) [> 3.7274 = 6.2123 < 8.0760] w=0.3782 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)L37.CB) [> 3.9262 = 6.5436 < 8.5067] w=0.3782 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)K316.CB) [> 4.6988 = 7.8313 < 10.1806] w=0.3706 to align # Constraint # added constraint: constraint((T0313)Q66.CB, (T0313)R106.CB) [> 4.6448 = 7.7414 < 10.0638] w=0.3706 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)G224.CA) [> 4.4214 = 7.3690 < 9.5798] w=0.3706 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)R202.CB) [> 4.5216 = 7.5359 < 9.7967] w=0.3706 to align # Constraint # added constraint: constraint((T0313)V172.CB, (T0313)V209.CB) [> 4.6913 = 7.8188 < 10.1644] w=0.3706 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)N254.CB) [> 4.1643 = 6.9405 < 9.0227] w=0.3706 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)T295.CB) [> 4.2649 = 7.1082 < 9.2406] w=0.3706 to align # Constraint # added constraint: constraint((T0313)E64.CB, (T0313)L296.CB) [> 3.6439 = 6.0732 < 7.8951] w=0.3444 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)E151.CB) [> 4.0475 = 6.7458 < 8.7696] w=0.3409 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)E151.CB) [> 2.8533 = 4.7556 < 6.1822] w=0.3409 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V65.CB) [> 3.3679 = 5.6131 < 7.2970] w=0.3409 to align # Constraint # added constraint: constraint((T0313)A29.CB, (T0313)K50.CB) [> 3.8302 = 6.3837 < 8.2988] w=0.3333 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)S288.CB) [> 4.7412 = 7.9020 < 10.2726] w=0.3147 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)F52.CB) [> 4.2248 = 7.0413 < 9.1538] w=0.3147 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)G87.CA) [> 4.3130 = 7.1883 < 9.3447] w=0.3147 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)V65.CB) [> 4.3210 = 7.2016 < 9.3621] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y163.CB, (T0313)L284.CB) [> 4.6566 = 7.7610 < 10.0893] w=0.3147 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)V164.CB) [> 4.7395 = 7.8992 < 10.2689] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)L196.CB) [> 4.0197 = 6.6995 < 8.7093] w=0.3147 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)Q173.CB) [> 4.5901 = 7.6501 < 9.9452] w=0.3147 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)Y124.CB) [> 4.7345 = 7.8909 < 10.2581] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)I178.CB) [> 3.8066 = 6.3444 < 8.2477] w=0.3147 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)V298.CB) [> 4.6603 = 7.7672 < 10.0974] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)Q300.CB) [> 4.7193 = 7.8654 < 10.2251] w=0.3147 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)L37.CB) [> 3.7898 = 6.3163 < 8.2111] w=0.2995 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)T311.CB) [> 3.7527 = 6.2544 < 8.1308] w=0.2995 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)H36.CB) [> 3.7307 = 6.2179 < 8.0833] w=0.2809 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V25.CB) [> 4.0802 = 6.8003 < 8.8404] w=0.2733 to align # Constraint # added constraint: constraint((T0313)D262.CB, (T0313)V274.CB) [> 4.6409 = 7.7348 < 10.0552] w=0.2620 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)F276.CB) [> 4.7568 = 7.9280 < 10.3064] w=0.2620 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)I35.CB) [> 4.4148 = 7.3580 < 9.5653] w=0.2471 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)L285.CB) [> 4.5409 = 7.5681 < 9.8386] w=0.2393 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)F317.CB) [> 4.7609 = 7.9349 < 10.3154] w=0.2360 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V299.CB) [> 4.7870 = 7.9784 < 10.3719] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)D230.CB) [> 4.4877 = 7.4796 < 9.7234] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L228.CB) [> 4.6185 = 7.6976 < 10.0068] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)N227.CB) [> 4.6095 = 7.6825 < 9.9873] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)C79.CB) [> 4.7338 = 7.8896 < 10.2565] w=0.2360 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)Y92.CB) [> 4.6102 = 7.6838 < 9.9889] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)G87.CA) [> 4.6588 = 7.7646 < 10.0940] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)K50.CB) [> 4.5070 = 7.5117 < 9.7652] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)G291.CA) [> 3.9904 = 6.6506 < 8.6458] w=0.2360 to align # Constraint # added constraint: constraint((T0313)K239.CB, (T0313)A250.CB) [> 2.8977 = 4.8295 < 6.2783] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)A250.CB) [> 3.0789 = 5.1315 < 6.6710] w=0.2360 to align # Constraint # added constraint: constraint((T0313)E235.CB, (T0313)Y313.CB) [> 4.6481 = 7.7469 < 10.0709] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L281.CB) [> 4.7567 = 7.9279 < 10.3063] w=0.2360 to align # Constraint # added constraint: constraint((T0313)T190.CB, (T0313)S200.CB) [> 2.9853 = 4.9755 < 6.4681] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)V211.CB) [> 4.5112 = 7.5186 < 9.7742] w=0.2360 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L142.CB) [> 4.7062 = 7.8437 < 10.1968] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)E192.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)G166.CA) [> 4.6736 = 7.7893 < 10.1261] w=0.2360 to align # Constraint # added constraint: constraint((T0313)E169.CB, (T0313)I208.CB) [> 4.6882 = 7.8136 < 10.1577] w=0.2360 to align # Constraint # added constraint: constraint((T0313)D74.CB, (T0313)G224.CA) [> 4.7158 = 7.8597 < 10.2176] w=0.2133 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)F184.CB) [> 4.6737 = 7.7895 < 10.1264] w=0.2133 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)I253.CB) [> 3.1897 = 5.3162 < 6.9110] w=0.2133 to align # Constraint # added constraint: constraint((T0313)K255.CB, (T0313)K280.CB) [> 4.6905 = 7.8176 < 10.1628] w=0.2133 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)L312.CB) [> 4.2278 = 7.0464 < 9.1603] w=0.2098 to align # Constraint # added constraint: constraint((T0313)L38.CB, (T0313)T308.CB) [> 4.4439 = 7.4065 < 9.6285] w=0.2098 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)H36.CB) [> 3.5505 = 5.9176 < 7.6929] w=0.2022 to align # Constraint # added constraint: constraint((T0313)E151.CB, (T0313)P165.CB) [> 3.2659 = 5.4432 < 7.0761] w=0.1947 to align # Constraint # added constraint: constraint((T0313)N1.CB, (T0313)G291.CA) [> 4.2439 = 7.0732 < 9.1952] w=0.1947 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)H36.CB) [> 4.7168 = 7.8613 < 10.2197] w=0.1836 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)E47.CB) [> 4.0260 = 6.7101 < 8.7231] w=0.1836 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)I253.CB) [> 3.0432 = 5.0719 < 6.5935] w=0.1836 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)L37.CB) [> 4.4728 = 7.4546 < 9.6910] w=0.1760 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)I35.CB) [> 3.1443 = 5.2404 < 6.8126] w=0.1684 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L285.CB) [> 4.5712 = 7.6188 < 9.9044] w=0.1573 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)I103.CB) [> 4.7033 = 7.8388 < 10.1904] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)R236.CB) [> 4.2948 = 7.1581 < 9.3055] w=0.1573 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)G233.CA) [> 4.3384 = 7.2307 < 9.3999] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)A205.CB) [> 4.7433 = 7.9056 < 10.2772] w=0.1573 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)I178.CB) [> 4.3784 = 7.2973 < 9.4865] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)G213.CA) [> 4.5826 = 7.6376 < 9.9289] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)T210.CB) [> 4.7052 = 7.8420 < 10.1946] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)V51.CB) [> 3.1168 = 5.1946 < 6.7530] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)N23.CB) [> 4.0493 = 6.7488 < 8.7735] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)L68.CB) [> 4.7636 = 7.9393 < 10.3211] w=0.1573 to align # Constraint # added constraint: constraint((T0313)G238.CA, (T0313)A250.CB) [> 3.7579 = 6.2631 < 8.1421] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)N254.CB) [> 3.5728 = 5.9547 < 7.7411] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)A250.CB) [> 3.6879 = 6.1465 < 7.9905] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)E249.CB) [> 4.0173 = 6.6955 < 8.7041] w=0.1573 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L284.CB) [> 4.3966 = 7.3277 < 9.5260] w=0.1573 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)E249.CB) [> 4.3632 = 7.2720 < 9.4536] w=0.1573 to align # Constraint # added constraint: constraint((T0313)K144.CB, (T0313)T191.CB) [> 3.0369 = 5.0616 < 6.5800] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)H36.CB) [> 4.4431 = 7.4051 < 9.6266] w=0.1422 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L150.CB) [> 4.5942 = 7.6569 < 9.9540] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)V164.CB) [> 3.1806 = 5.3010 < 6.8913] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)P165.CB) [> 3.5178 = 5.8630 < 7.6220] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)L167.CB) [> 3.5374 = 5.8956 < 7.6643] w=0.1422 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)L162.CB) [> 3.6361 = 6.0602 < 7.8783] w=0.1422 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)L162.CB) [> 4.2477 = 7.0794 < 9.2032] w=0.1422 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)Y163.CB) [> 3.1643 = 5.2738 < 6.8560] w=0.1422 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)N197.CB) [> 4.4714 = 7.4523 < 9.6880] w=0.1346 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)Q171.CB) [> 4.4548 = 7.4247 < 9.6522] w=0.1346 to align # Constraint # added constraint: constraint((T0313)R277.CB, (T0313)Q286.CB) [> 4.5812 = 7.6354 < 9.9260] w=0.1346 to align # Constraint # added constraint: constraint((T0313)Q161.CB, (T0313)T223.CB) [> 4.6063 = 7.6771 < 9.9803] w=0.1311 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)F27.CB) [> 4.1876 = 6.9793 < 9.0731] w=0.1049 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)L37.CB) [> 4.4494 = 7.4157 < 9.6405] w=0.1049 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)D49.CB) [> 4.1665 = 6.9442 < 9.0275] w=0.1049 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)E47.CB) [> 3.7902 = 6.3170 < 8.2121] w=0.1049 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)L312.CB) [> 4.4714 = 7.4523 < 9.6879] w=0.1049 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)Q251.CB) [> 4.7355 = 7.8925 < 10.2602] w=0.1049 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)L38.CB) [> 4.1494 = 6.9157 < 8.9904] w=0.0973 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)P303.CB) [> 3.9113 = 6.5188 < 8.4745] w=0.0898 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)F193.CB) [> 3.7270 = 6.2116 < 8.0751] w=0.0787 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L162.CB) [> 4.4397 = 7.3994 < 9.6193] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)T223.CB) [> 4.0514 = 6.7524 < 8.7781] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)D177.CB) [> 4.7916 = 7.9860 < 10.3818] w=0.0787 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)R189.CB) [> 4.0540 = 6.7567 < 8.7837] w=0.0787 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)G185.CA) [> 3.8696 = 6.4493 < 8.3842] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)Y163.CB) [> 4.2458 = 7.0763 < 9.1992] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)Q161.CB) [> 2.9332 = 4.8887 < 6.3554] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)R153.CB) [> 4.5471 = 7.5785 < 9.8521] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)N197.CB) [> 4.3092 = 7.1820 < 9.3366] w=0.0787 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)D49.CB) [> 4.6180 = 7.6966 < 10.0056] w=0.0787 to align # Constraint # added constraint: constraint((T0313)D28.CB, (T0313)E47.CB) [> 4.7969 = 7.9949 < 10.3933] w=0.0787 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)T22.CB) [> 4.7952 = 7.9920 < 10.3896] w=0.0787 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)S290.CB) [> 4.7736 = 7.9560 < 10.3428] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)P101.CB) [> 4.7263 = 7.8772 < 10.2404] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)H199.CB) [> 4.5283 = 7.5472 < 9.8114] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)N197.CB) [> 4.7994 = 7.9990 < 10.3987] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)R189.CB) [> 2.7770 = 4.6284 < 6.0169] w=0.0787 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)V299.CB) [> 4.7352 = 7.8920 < 10.2596] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)A232.CB) [> 4.6696 = 7.7827 < 10.1175] w=0.0787 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)K225.CB) [> 4.7088 = 7.8480 < 10.2024] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S71.CB, (T0313)S293.CB) [> 3.6834 = 6.1391 < 7.9808] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)L226.CB) [> 4.7604 = 7.9341 < 10.3143] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S203.CB, (T0313)E249.CB) [> 4.3724 = 7.2874 < 9.4736] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L196.CB, (T0313)E249.CB) [> 4.4097 = 7.3495 < 9.5544] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)V321.CB) [> 4.0675 = 6.7792 < 8.8130] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)N254.CB) [> 3.8680 = 6.4466 < 8.3806] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)Q251.CB) [> 3.1306 = 5.2177 < 6.7830] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)A250.CB) [> 1.9817 = 3.3028 < 4.2937] w=0.0787 to align # Constraint # added constraint: constraint((T0313)K239.CB, (T0313)E249.CB) [> 3.2583 = 5.4305 < 7.0597] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)E310.CB) [> 4.5612 = 7.6019 < 9.8825] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)I253.CB) [> 3.1779 = 5.2965 < 6.8855] w=0.0787 to align # Constraint # added constraint: constraint((T0313)K149.CB, (T0313)L196.CB) [> 3.9548 = 6.5913 < 8.5687] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)F193.CB) [> 4.6082 = 7.6803 < 9.9844] w=0.0787 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)F193.CB) [> 3.1616 = 5.2693 < 6.8500] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L196.CB, (T0313)R246.CB) [> 4.1625 = 6.9375 < 9.0187] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T190.CB, (T0313)S203.CB) [> 2.9200 = 4.8666 < 6.3266] w=0.0787 to align # Constraint # added constraint: constraint((T0313)G185.CA, (T0313)A205.CB) [> 4.7187 = 7.8645 < 10.2239] w=0.0787 to align # Constraint # added constraint: constraint((T0313)P156.CB, (T0313)Q286.CB) [> 4.4293 = 7.3822 < 9.5968] w=0.0787 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)L38.CB) [> 4.0633 = 6.7721 < 8.8037] w=0.0711 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)V172.CB) [> 4.6205 = 7.7009 < 10.0111] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T191.CB, (T0313)S203.CB) [> 4.1942 = 6.9904 < 9.0875] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T191.CB, (T0313)A205.CB) [> 4.7178 = 7.8630 < 10.2220] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)P43.CB) [> 4.4885 = 7.4809 < 9.7251] w=0.0524 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)K50.CB) [> 4.1614 = 6.9357 < 9.0164] w=0.0524 to align # Constraint # added constraint: constraint((T0313)A98.CB, (T0313)V175.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.0524 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)F182.CB) [> 3.6997 = 6.1662 < 8.0161] w=0.0524 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)D49.CB) [> 4.3202 = 7.2003 < 9.3604] w=0.0524 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)L48.CB) [> 4.4278 = 7.3796 < 9.5935] w=0.0524 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)S45.CB) [> 3.5766 = 5.9610 < 7.7493] w=0.0524 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)A21.CB) [> 4.1474 = 6.9123 < 8.9860] w=0.0449 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)L285.CB) [> 4.4234 = 7.3724 < 9.5841] w=0.0339 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)T311.CB) [> 4.2990 = 7.1651 < 9.3146] w=0.0262 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)V301.CB) [> 3.6772 = 6.1287 < 7.9674] w=0.0262 to align # Constraint # added constraint: constraint((T0313)R246.CB, (T0313)K255.CB) [> 4.7219 = 7.8698 < 10.2308] w=0.0262 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)R246.CB) [> 4.6614 = 7.7689 < 10.0996] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T194.CB, (T0313)R246.CB) [> 4.6912 = 7.8186 < 10.1642] w=0.0262 to align # Constraint # added constraint: constraint((T0313)G96.CA, (T0313)H186.CB) [> 3.4140 = 5.6900 < 7.3970] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)R106.CB) [> 3.3561 = 5.5934 < 7.2714] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)Q109.CB) [> 3.6866 = 6.1444 < 7.9877] w=0.0262 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)E47.CB) [> 4.6674 = 7.7790 < 10.1127] w=0.0187 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/decoys/ # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 538, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 540, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 914, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 916, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 934, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 936, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing WARNING: atoms too close: (T0313)V304.O and (T0313)E305.N only 0.000 apart, marking (T0313)E305.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)P303.O and (T0313)V304.N only 0.000 apart, marking (T0313)V304.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.7071 model score -0.7043 model score -0.6743 model score -0.6957 model score -0.6458 model score -0.6783 model score -0.5811 model score -0.6342 model score -0.5898 model score -0.6086 model score -0.6698 model score -0.6606 model score -0.6658 model score -0.6214 model score -0.6681 model score -0.6301 model score -0.6547 model score -0.6238 model score -0.5472 model score -0.6614 model score -0.7250 model score -0.5912 model score 2.0079 model score -0.7145 model score -0.2621 model score 2.1892 model score 2.0216 model score 2.0230 model score 2.0484 model score 2.1423 model score -0.7376 model score -0.7235 model score -0.5676 model score -0.7221 model score -0.6297 model score -0.7218 model score -0.6592 model score -0.6870 model score -0.6178 model score -0.6838 model score -0.6706 model score -0.5866 model score -0.5563 model score -0.5923 model score -0.6693 model score -0.6419 model score -0.6230 model score 1.2686 model score 1.2689 model score 1.2697 model score 1.2710 model score 1.2724 model score -0.6034 model score -0.6249 model score -0.6786 model score -0.6092 model score -0.6514 model score -0.6423 model score -0.6870 model score -0.6592 model score -0.6838 model score -0.5793 model score -0.7163 model score 0.0114 model score -0.2488 model score -0.6287 model score -0.7002 model score 1.2684 model score 1.2675 model score 1.2673 model score 1.2681 model score 1.2675 model score 1.2684 model score 1.2675 model score 1.2675 model score 1.2784 model score 1.2673 model score 2.3089 model score 2.3230 model score 2.4588 model score 2.3317 model score 2.4728 model score 1.2672 model score 1.2833 model score 1.2854 model score 1.2849 model score 1.2771 model score -0.6882 model score -0.6810 model score -0.6455 model score -0.6387 model score -0.6191 model score -0.1139 model score -0.6699 model score -0.7041 model score -0.6072 model score -0.5913 model score -0.4137 model score -0.6484 model score -0.7528 model score -0.7528 model score -0.5842 model score -0.6142 model score -0.5917 model score -0.5034 model score -0.3780 model score -0.5139 model score -0.5043 model score -0.5393 model score -0.4314 model score -0.4048 model score -0.6893 model score -0.6418 model score -0.6502 model score -0.5524 model score -0.5492 model score -0.4531 model score -0.5436 model score -0.4828 model score -0.4878 model score -0.4340 model score -0.5139 model score -0.6693 model score -0.6667 model score -0.6639 model score -0.6602 model score -0.6656 model score -0.6693 model score -0.6762 model score -0.6903 model score 0.3051 model score -0.6859 model score -0.6558 model score -0.7149 model score -0.6292 model score -0.7188 model score -0.6558 model score -0.6063 model score -0.6264 model score -0.6264 model score -0.6264 model score -0.6555 model score -0.6555 model score -0.6957 model score -0.6743 model score -0.6388 model score -0.6281 model score -0.7052 model score -0.5712 model score -0.7431 model score -0.6424 model score -0.7026 model score -0.6152 model score -0.6372 model score -0.6403 model score -0.5377 model score -0.6105 model score -0.6527 model score -0.6562 model score -0.6960 model score -0.5537 model score -0.6417 model score -0.6982 model score -0.7071 model score -0.7043 model score -0.6743 model score -0.6957 model score -0.6458 model score -0.7040 model score -0.7089 model score -0.7133 model score -0.7140 model score -0.7000 model score 1.2677 model score 1.2675 model score 1.2685 model score 1.2676 model score 1.2675 model score 1.2680 model score 1.2679 model score 1.2673 model score 1.2682 model score 1.2685 model score -0.7382 model score -0.7250 model score -0.7292 model score -0.5114 model score -0.5295 model score -0.5894 model score -0.6640 model score -0.7127 model score -0.6631 model score -0.5361 model score -0.5867 model score -0.6640 model score -0.7101 model score -0.6278 model score -0.6930 model score -0.5866 model score -0.6640 model score -0.7175 model score -0.6892 model score -0.5632 model score 1.2675 model score 1.2678 model score 1.2673 model score 1.2684 model score 1.2679 model score -0.6459 model score 1.2675 model score 1.2678 model score 1.2673 model score 1.2684 model score 1.2679 model score -0.6751 model score -0.6829 model score -0.6632 model score -0.5801 model score -0.6104 model score -0.6875 model score -0.5896 model score 1.2675 model score 1.2681 model score 1.2673 model score 1.2675 model score 1.2771 model score -0.7108 model score -0.7325 model score -0.6975 model score 2.3847 model score 2.3725 model score 2.5644 model score 2.3525 model score 2.2689 model score 2.0209 model score 2.2250 model score -0.7137 model score -0.6893 model score 1.9703 model score 2.1509 model score 2.0639 model score -0.6028 model score -0.6128 model score -0.6128 model score -0.6128 model score -0.5919 model score -0.7019 model score -0.6980 model score -0.5808 model score -0.6044 model score 2.2403 model score 2.1699 model score -0.6370 model score -0.6699 USE_META, weight: 0.9876 cost: -0.7071 min: -0.7528 max: 2.5644 USE_META, weight: 0.9868 cost: -0.7043 min: -0.7528 max: 2.5644 USE_META, weight: 0.9787 cost: -0.6743 min: -0.7528 max: 2.5644 USE_META, weight: 0.9845 cost: -0.6957 min: -0.7528 max: 2.5644 USE_META, weight: 0.9710 cost: -0.6458 min: -0.7528 max: 2.5644 USE_META, weight: 0.9798 cost: -0.6783 min: -0.7528 max: 2.5644 USE_META, weight: 0.9534 cost: -0.5811 min: -0.7528 max: 2.5644 USE_META, weight: 0.9678 cost: -0.6342 min: -0.7528 max: 2.5644 USE_META, weight: 0.9558 cost: -0.5898 min: -0.7528 max: 2.5644 USE_META, weight: 0.9609 cost: -0.6086 min: -0.7528 max: 2.5644 USE_META, weight: 0.9775 cost: -0.6698 min: -0.7528 max: 2.5644 USE_META, weight: 0.9750 cost: -0.6606 min: -0.7528 max: 2.5644 USE_META, weight: 0.9764 cost: -0.6658 min: -0.7528 max: 2.5644 USE_META, weight: 0.9643 cost: -0.6214 min: -0.7528 max: 2.5644 USE_META, weight: 0.9770 cost: -0.6681 min: -0.7528 max: 2.5644 USE_META, weight: 0.9667 cost: -0.6301 min: -0.7528 max: 2.5644 USE_META, weight: 0.9734 cost: -0.6547 min: -0.7528 max: 2.5644 USE_META, weight: 0.9650 cost: -0.6238 min: -0.7528 max: 2.5644 USE_META, weight: 0.9442 cost: -0.5472 min: -0.7528 max: 2.5644 USE_META, weight: 0.9752 cost: -0.6614 min: -0.7528 max: 2.5644 USE_META, weight: 0.9925 cost: -0.7250 min: -0.7528 max: 2.5644 USE_META, weight: 0.9562 cost: -0.5912 min: -0.7528 max: 2.5644 USE_META, weight: 0.2510 cost: 2.0079 min: -0.7528 max: 2.5644 USE_META, weight: 0.9896 cost: -0.7145 min: -0.7528 max: 2.5644 USE_META, weight: 0.8669 cost: -0.2621 min: -0.7528 max: 2.5644 USE_META, weight: 0.2018 cost: 2.1892 min: -0.7528 max: 2.5644 USE_META, weight: 0.2473 cost: 2.0216 min: -0.7528 max: 2.5644 USE_META, weight: 0.2469 cost: 2.0230 min: -0.7528 max: 2.5644 USE_META, weight: 0.2400 cost: 2.0484 min: -0.7528 max: 2.5644 USE_META, weight: 0.2145 cost: 2.1423 min: -0.7528 max: 2.5644 USE_META, weight: 0.9959 cost: -0.7376 min: -0.7528 max: 2.5644 USE_META, weight: 0.9921 cost: -0.7235 min: -0.7528 max: 2.5644 USE_META, weight: 0.9498 cost: -0.5676 min: -0.7528 max: 2.5644 USE_META, weight: 0.9917 cost: -0.7221 min: -0.7528 max: 2.5644 USE_META, weight: 0.9666 cost: -0.6297 min: -0.7528 max: 2.5644 USE_META, weight: 0.9916 cost: -0.7218 min: -0.7528 max: 2.5644 USE_META, weight: 0.9746 cost: -0.6592 min: -0.7528 max: 2.5644 USE_META, weight: 0.9821 cost: -0.6870 min: -0.7528 max: 2.5644 USE_META, weight: 0.9634 cost: -0.6178 min: -0.7528 max: 2.5644 USE_META, weight: 0.9813 cost: -0.6838 min: -0.7528 max: 2.5644 USE_META, weight: 0.9777 cost: -0.6706 min: -0.7528 max: 2.5644 USE_META, weight: 0.9549 cost: -0.5866 min: -0.7528 max: 2.5644 USE_META, weight: 0.9467 cost: -0.5563 min: -0.7528 max: 2.5644 USE_META, weight: 0.9564 cost: -0.5923 min: -0.7528 max: 2.5644 USE_META, weight: 0.9773 cost: -0.6693 min: -0.7528 max: 2.5644 USE_META, weight: 0.9699 cost: -0.6419 min: -0.7528 max: 2.5644 USE_META, weight: 0.9648 cost: -0.6230 min: -0.7528 max: 2.5644 USE_META, weight: 0.4516 cost: 1.2686 min: -0.7528 max: 2.5644 USE_META, weight: 0.4515 cost: 1.2689 min: -0.7528 max: 2.5644 USE_META, weight: 0.4513 cost: 1.2697 min: -0.7528 max: 2.5644 USE_META, weight: 0.4509 cost: 1.2710 min: -0.7528 max: 2.5644 USE_META, weight: 0.4505 cost: 1.2724 min: -0.7528 max: 2.5644 USE_META, weight: 0.9595 cost: -0.6034 min: -0.7528 max: 2.5644 USE_META, weight: 0.9653 cost: -0.6249 min: -0.7528 max: 2.5644 USE_META, weight: 0.9799 cost: -0.6786 min: -0.7528 max: 2.5644 USE_META, weight: 0.9610 cost: -0.6092 min: -0.7528 max: 2.5644 USE_META, weight: 0.9725 cost: -0.6514 min: -0.7528 max: 2.5644 USE_META, weight: 0.9700 cost: -0.6423 min: -0.7528 max: 2.5644 USE_META, weight: 0.9821 cost: -0.6870 min: -0.7528 max: 2.5644 USE_META, weight: 0.9746 cost: -0.6592 min: -0.7528 max: 2.5644 USE_META, weight: 0.9813 cost: -0.6838 min: -0.7528 max: 2.5644 USE_META, weight: 0.9529 cost: -0.5793 min: -0.7528 max: 2.5644 USE_META, weight: 0.9901 cost: -0.7163 min: -0.7528 max: 2.5644 USE_META, weight: 0.7927 cost: 0.0114 min: -0.7528 max: 2.5644 USE_META, weight: 0.8633 cost: -0.2488 min: -0.7528 max: 2.5644 USE_META, weight: 0.9663 cost: -0.6287 min: -0.7528 max: 2.5644 USE_META, weight: 0.9857 cost: -0.7002 min: -0.7528 max: 2.5644 USE_META, weight: 0.4516 cost: 1.2684 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2673 min: -0.7528 max: 2.5644 USE_META, weight: 0.4517 cost: 1.2681 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4516 cost: 1.2684 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4489 cost: 1.2784 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2673 min: -0.7528 max: 2.5644 USE_META, weight: 0.1693 cost: 2.3089 min: -0.7528 max: 2.5644 USE_META, weight: 0.1655 cost: 2.3230 min: -0.7528 max: 2.5644 USE_META, weight: 0.1287 cost: 2.4588 min: -0.7528 max: 2.5644 USE_META, weight: 0.1631 cost: 2.3317 min: -0.7528 max: 2.5644 USE_META, weight: 0.1248 cost: 2.4728 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2672 min: -0.7528 max: 2.5644 USE_META, weight: 0.4476 cost: 1.2833 min: -0.7528 max: 2.5644 USE_META, weight: 0.4470 cost: 1.2854 min: -0.7528 max: 2.5644 USE_META, weight: 0.4471 cost: 1.2849 min: -0.7528 max: 2.5644 USE_META, weight: 0.4493 cost: 1.2771 min: -0.7528 max: 2.5644 USE_META, weight: 0.9825 cost: -0.6882 min: -0.7528 max: 2.5644 USE_META, weight: 0.9805 cost: -0.6810 min: -0.7528 max: 2.5644 USE_META, weight: 0.9709 cost: -0.6455 min: -0.7528 max: 2.5644 USE_META, weight: 0.9690 cost: -0.6387 min: -0.7528 max: 2.5644 USE_META, weight: 0.9637 cost: -0.6191 min: -0.7528 max: 2.5644 USE_META, weight: 0.8267 cost: -0.1139 min: -0.7528 max: 2.5644 USE_META, weight: 0.9775 cost: -0.6699 min: -0.7528 max: 2.5644 USE_META, weight: 0.9868 cost: -0.7041 min: -0.7528 max: 2.5644 USE_META, weight: 0.9605 cost: -0.6072 min: -0.7528 max: 2.5644 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min: -0.7528 max: 2.5644 USE_META, weight: 0.9699 cost: -0.6418 min: -0.7528 max: 2.5644 USE_META, weight: 0.9722 cost: -0.6502 min: -0.7528 max: 2.5644 USE_META, weight: 0.9456 cost: -0.5524 min: -0.7528 max: 2.5644 USE_META, weight: 0.9448 cost: -0.5492 min: -0.7528 max: 2.5644 USE_META, weight: 0.9187 cost: -0.4531 min: -0.7528 max: 2.5644 USE_META, weight: 0.9432 cost: -0.5436 min: -0.7528 max: 2.5644 USE_META, weight: 0.9268 cost: -0.4828 min: -0.7528 max: 2.5644 USE_META, weight: 0.9281 cost: -0.4878 min: -0.7528 max: 2.5644 USE_META, weight: 0.9135 cost: -0.4340 min: -0.7528 max: 2.5644 USE_META, weight: 0.9352 cost: -0.5139 min: -0.7528 max: 2.5644 USE_META, weight: 0.9773 cost: -0.6693 min: -0.7528 max: 2.5644 USE_META, weight: 0.9766 cost: -0.6667 min: -0.7528 max: 2.5644 USE_META, weight: 0.9759 cost: -0.6639 min: -0.7528 max: 2.5644 USE_META, weight: 0.9749 cost: -0.6602 min: -0.7528 max: 2.5644 USE_META, weight: 0.9763 cost: -0.6656 min: -0.7528 max: 2.5644 USE_META, 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cost: -0.6562 min: -0.7528 max: 2.5644 USE_META, weight: 0.9846 cost: -0.6960 min: -0.7528 max: 2.5644 USE_META, weight: 0.9460 cost: -0.5537 min: -0.7528 max: 2.5644 USE_META, weight: 0.9699 cost: -0.6417 min: -0.7528 max: 2.5644 USE_META, weight: 0.9852 cost: -0.6982 min: -0.7528 max: 2.5644 USE_META, weight: 0.9876 cost: -0.7071 min: -0.7528 max: 2.5644 USE_META, weight: 0.9868 cost: -0.7043 min: -0.7528 max: 2.5644 USE_META, weight: 0.9787 cost: -0.6743 min: -0.7528 max: 2.5644 USE_META, weight: 0.9845 cost: -0.6957 min: -0.7528 max: 2.5644 USE_META, weight: 0.9710 cost: -0.6458 min: -0.7528 max: 2.5644 USE_META, weight: 0.9868 cost: -0.7040 min: -0.7528 max: 2.5644 USE_META, weight: 0.9881 cost: -0.7089 min: -0.7528 max: 2.5644 USE_META, weight: 0.9893 cost: -0.7133 min: -0.7528 max: 2.5644 USE_META, weight: 0.9895 cost: -0.7140 min: -0.7528 max: 2.5644 USE_META, weight: 0.9857 cost: -0.7000 min: -0.7528 max: 2.5644 USE_META, weight: 0.4518 cost: 1.2677 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4516 cost: 1.2685 min: -0.7528 max: 2.5644 USE_META, weight: 0.4518 cost: 1.2676 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4517 cost: 1.2680 min: -0.7528 max: 2.5644 USE_META, weight: 0.4518 cost: 1.2679 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2673 min: -0.7528 max: 2.5644 USE_META, weight: 0.4517 cost: 1.2682 min: -0.7528 max: 2.5644 USE_META, weight: 0.4516 cost: 1.2685 min: -0.7528 max: 2.5644 USE_META, weight: 0.9960 cost: -0.7382 min: -0.7528 max: 2.5644 USE_META, weight: 0.9925 cost: -0.7250 min: -0.7528 max: 2.5644 USE_META, weight: 0.9936 cost: -0.7292 min: -0.7528 max: 2.5644 USE_META, weight: 0.9345 cost: -0.5114 min: -0.7528 max: 2.5644 USE_META, weight: 0.9394 cost: -0.5295 min: -0.7528 max: 2.5644 USE_META, weight: 0.9557 cost: -0.5894 min: -0.7528 max: 2.5644 USE_META, weight: 0.9759 cost: -0.6640 min: 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USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4517 cost: 1.2681 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2673 min: -0.7528 max: 2.5644 USE_META, weight: 0.4519 cost: 1.2675 min: -0.7528 max: 2.5644 USE_META, weight: 0.4493 cost: 1.2771 min: -0.7528 max: 2.5644 USE_META, weight: 0.9886 cost: -0.7108 min: -0.7528 max: 2.5644 USE_META, weight: 0.9945 cost: -0.7325 min: -0.7528 max: 2.5644 USE_META, weight: 0.9850 cost: -0.6975 min: -0.7528 max: 2.5644 USE_META, weight: 0.1488 cost: 2.3847 min: -0.7528 max: 2.5644 USE_META, weight: 0.1521 cost: 2.3725 min: -0.7528 max: 2.5644 USE_META, weight: 0.1000 cost: 2.5644 min: -0.7528 max: 2.5644 USE_META, weight: 0.1575 cost: 2.3525 min: -0.7528 max: 2.5644 USE_META, weight: 0.1802 cost: 2.2689 min: -0.7528 max: 2.5644 USE_META, weight: 0.2474 cost: 2.0209 min: -0.7528 max: 2.5644 USE_META, weight: 0.1921 cost: 2.2250 min: -0.7528 max: 2.5644 USE_META, weight: 0.9894 cost: -0.7137 min: -0.7528 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-0.6370 min: -0.7528 max: 2.5644 USE_META, weight: 0.9775 cost: -0.6699 min: -0.7528 max: 2.5644 USE_EVALUE, weight: 0.1103 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.1103 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.1103 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.7147 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.7147 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.7147 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 0.9922 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0000 Number of contacts in models: 254 Number of contacts in alignments: 43 NUMB_ALIGNS: 43 Adding 12157 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -569.9341, CN propb: -569.9341 weights: 0.4644 constraints: 990 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 990 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 990 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 11167 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 11167 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 12157 # command: