# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0311/ # command:# Making conformation for sequence T0311 numbered 1 through 97 Created new target T0311 from T0311.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0311/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0311//projects/compbio/experiments/protein-predict/casp7/T0311/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0311//projects/compbio/experiments/protein-predict/casp7/T0311/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0311/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0311/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0311)F27.CB, (T0311)A38.CB) [> 3.3384 = 5.5640 < 7.2332] w=1.0000 to align # Constraint # added constraint: constraint((T0311)L24.CB, (T0311)A38.CB) [> 3.0971 = 5.1618 < 6.7103] w=1.0000 to align # Constraint # added constraint: constraint((T0311)L24.CB, (T0311)S39.CB) [> 3.5542 = 5.9237 < 7.7008] w=0.9769 to align # Constraint # added constraint: constraint((T0311)L24.CB, (T0311)P35.CB) [> 3.2458 = 5.4097 < 7.0326] w=0.9692 to align # Constraint # added constraint: constraint((T0311)A28.CB, (T0311)A38.CB) [> 2.8086 = 4.6810 < 6.0853] w=0.9669 to align # Constraint # added constraint: constraint((T0311)R25.CB, (T0311)P35.CB) [> 3.2009 = 5.3348 < 6.9352] w=0.9398 to align # Constraint # added constraint: constraint((T0311)A28.CB, (T0311)T37.CB) [> 4.1431 = 6.9052 < 8.9768] w=0.8675 to align # Constraint # added constraint: constraint((T0311)L24.CB, (T0311)L42.CB) [> 4.3952 = 7.3253 < 9.5229] w=0.8198 to align # Constraint # added constraint: constraint((T0311)M31.CB, (T0311)K55.CB) [> 3.1264 = 5.2107 < 6.7739] w=0.8119 to align # Constraint # added constraint: constraint((T0311)M31.CB, (T0311)L56.CB) [> 3.4604 = 5.7673 < 7.4974] w=0.7835 to align # Constraint # added constraint: constraint((T0311)L17.CB, (T0311)F27.CB) [> 3.4272 = 5.7120 < 7.4256] w=0.7408 to align # Constraint # added constraint: constraint((T0311)F27.CB, (T0311)V59.CB) [> 3.5530 = 5.9217 < 7.6982] w=0.6800 to align # Constraint # added constraint: constraint((T0311)Q14.CB, (T0311)L42.CB) [> 3.2294 = 5.3823 < 6.9970] w=0.6394 to align # Constraint # added constraint: constraint((T0311)M31.CB, (T0311)V59.CB) [> 3.0156 = 5.0260 < 6.5338] w=0.6314 to align # Constraint # added constraint: constraint((T0311)A30.CB, (T0311)V59.CB) [> 2.6603 = 4.4339 < 5.7640] w=0.6277 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)L56.CB) [> 4.0541 = 6.7568 < 8.7839] w=0.5814 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)L41.CB) [> 3.5845 = 5.9742 < 7.7665] w=0.5808 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)I60.CB) [> 3.3075 = 5.5124 < 7.1661] w=0.5765 to align # Constraint # added constraint: constraint((T0311)L20.CB, (T0311)I60.CB) [> 4.1946 = 6.9909 < 9.0882] w=0.5443 to align # Constraint # added constraint: constraint((T0311)I33.CB, (T0311)M52.CB) [> 4.0813 = 6.8021 < 8.8428] w=0.5400 to align # Constraint # added constraint: constraint((T0311)F27.CB, (T0311)L56.CB) [> 3.9901 = 6.6502 < 8.6453] w=0.5392 to align # Constraint # added constraint: constraint((T0311)L17.CB, (T0311)I60.CB) [> 4.1239 = 6.8731 < 8.9350] w=0.5359 to align # Constraint # added constraint: constraint((T0311)M31.CB, (T0311)M52.CB) [> 4.0321 = 6.7202 < 8.7363] w=0.5234 to align # Constraint # added constraint: constraint((T0311)L17.CB, (T0311)L42.CB) [> 4.5206 = 7.5343 < 9.7945] w=0.5233 to align # Constraint # added constraint: constraint((T0311)I54.CB, (T0311)P64.CB) [> 3.6652 = 6.1087 < 7.9412] w=0.4853 to align # Constraint # added constraint: constraint((T0311)A53.CB, (T0311)P64.CB) [> 3.3626 = 5.6043 < 7.2856] w=0.4853 to align # Constraint # added constraint: constraint((T0311)E32.CB, (T0311)K55.CB) [> 3.7974 = 6.3291 < 8.2278] w=0.4804 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)S62.CB) [> 3.7766 = 6.2943 < 8.1826] w=0.4782 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)I60.CB) [> 4.2139 = 7.0232 < 9.1302] w=0.4743 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)L56.CB) [> 3.9625 = 6.6042 < 8.5855] w=0.4570 to align # Constraint # added constraint: constraint((T0311)A38.CB, (T0311)L56.CB) [> 4.0032 = 6.6720 < 8.6736] w=0.4327 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)M52.CB) [> 4.2381 = 7.0636 < 9.1826] w=0.4106 to align # Constraint # added constraint: constraint((T0311)I33.CB, (T0311)L56.CB) [> 4.0091 = 6.6819 < 8.6864] w=0.3821 to align # Constraint # added constraint: constraint((T0311)L20.CB, (T0311)G61.CA) [> 4.6061 = 7.6768 < 9.9798] w=0.3503 to align # Constraint # added constraint: constraint((T0311)T37.CB, (T0311)M52.CB) [> 4.1673 = 6.9455 < 9.0291] w=0.3478 to align # Constraint # added constraint: constraint((T0311)A53.CB, (T0311)W67.CB) [> 3.9191 = 6.5318 < 8.4914] w=0.3354 to align # Constraint # added constraint: constraint((T0311)S57.CB, (T0311)W67.CB) [> 3.3449 = 5.5748 < 7.2472] w=0.3342 to align # Constraint # added constraint: constraint((T0311)M31.CB, (T0311)V58.CB) [> 4.3430 = 7.2383 < 9.4097] w=0.3308 to align # Constraint # added constraint: constraint((T0311)I33.CB, (T0311)K55.CB) [> 3.9690 = 6.6151 < 8.5996] w=0.3196 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)A38.CB) [> 4.4855 = 7.4759 < 9.7186] w=0.3180 to align # Constraint # added constraint: constraint((T0311)S57.CB, (T0311)M66.CB) [> 4.3484 = 7.2473 < 9.4215] w=0.2948 to align # Constraint # added constraint: constraint((T0311)G10.CA, (T0311)L41.CB) [> 3.4170 = 5.6950 < 7.4035] w=0.2836 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)F27.CB) [> 4.2133 = 7.0221 < 9.1288] w=0.2745 to align # Constraint # added constraint: constraint((T0311)G10.CA, (T0311)G44.CA) [> 3.2636 = 5.4394 < 7.0712] w=0.2724 to align # Constraint # added constraint: constraint((T0311)I12.CB, (T0311)W67.CB) [> 3.4559 = 5.7599 < 7.4879] w=0.2694 to align # Constraint # added constraint: constraint((T0311)L17.CB, (T0311)A38.CB) [> 4.7024 = 7.8373 < 10.1885] w=0.2610 to align # Constraint # added constraint: constraint((T0311)V22.CB, (T0311)V59.CB) [> 4.3493 = 7.2489 < 9.4236] w=0.2537 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)G61.CA) [> 4.3584 = 7.2640 < 9.4432] w=0.2481 to align # Constraint # added constraint: constraint((T0311)V22.CB, (T0311)I60.CB) [> 4.4709 = 7.4515 < 9.6870] w=0.2464 to align # Constraint # added constraint: constraint((T0311)I12.CB, (T0311)M66.CB) [> 4.2614 = 7.1024 < 9.2331] w=0.2333 to align # Constraint # added constraint: constraint((T0311)T37.CB, (T0311)L48.CB) [> 4.0693 = 6.7821 < 8.8168] w=0.2210 to align # Constraint # added constraint: constraint((T0311)A30.CB, (T0311)K55.CB) [> 4.1431 = 6.9052 < 8.9767] w=0.1930 to align # Constraint # added constraint: constraint((T0311)A53.CB, (T0311)L68.CB) [> 4.5233 = 7.5389 < 9.8006] w=0.1930 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)W67.CB) [> 4.3636 = 7.2726 < 9.4544] w=0.1848 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)A53.CB) [> 3.4491 = 5.7484 < 7.4730] w=0.1833 to align # Constraint # added constraint: constraint((T0311)L20.CB, (T0311)V59.CB) [> 4.6604 = 7.7673 < 10.0975] w=0.1682 to align # Constraint # added constraint: constraint((T0311)A30.CB, (T0311)I60.CB) [> 4.4186 = 7.3643 < 9.5736] w=0.1525 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)F27.CB) [> 3.3354 = 5.5590 < 7.2267] w=0.1425 to align # Constraint # added constraint: constraint((T0311)P50.CB, (T0311)P64.CB) [> 4.4727 = 7.4545 < 9.6908] w=0.1366 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)A30.CB) [> 3.9246 = 6.5409 < 8.5032] w=0.1326 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)S57.CB) [> 3.8820 = 6.4700 < 8.4110] w=0.1305 to align # Constraint # added constraint: constraint((T0311)E26.CB, (T0311)V59.CB) [> 4.3709 = 7.2848 < 9.4702] w=0.1256 to align # Constraint # added constraint: constraint((T0311)P9.CB, (T0311)L41.CB) [> 4.4409 = 7.4015 < 9.6219] w=0.1199 to align # Constraint # added constraint: constraint((T0311)P9.CB, (T0311)W67.CB) [> 3.8497 = 6.4162 < 8.3410] w=0.1086 to align # Constraint # added constraint: constraint((T0311)I12.CB, (T0311)M31.CB) [> 3.7852 = 6.3088 < 8.2014] w=0.1081 to align # Constraint # added constraint: constraint((T0311)S23.CB, (T0311)P35.CB) [> 4.6545 = 7.7575 < 10.0848] w=0.0918 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)L48.CB) [> 3.5370 = 5.8949 < 7.6634] w=0.0873 to align # Constraint # added constraint: constraint((T0311)P9.CB, (T0311)L48.CB) [> 4.0647 = 6.7745 < 8.8069] w=0.0866 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)S62.CB) [> 4.3623 = 7.2705 < 9.4517] w=0.0825 to align # Constraint # added constraint: constraint((T0311)A28.CB, (T0311)V59.CB) [> 4.4722 = 7.4536 < 9.6897] w=0.0802 to align # Constraint # added constraint: constraint((T0311)S57.CB, (T0311)L70.CB) [> 4.1594 = 6.9323 < 9.0120] w=0.0763 to align # Constraint # added constraint: constraint((T0311)P64.CB, (T0311)A79.CB) [> 3.7990 = 6.3317 < 8.2312] w=0.0749 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)A53.CB) [> 4.1428 = 6.9046 < 8.9760] w=0.0695 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)V22.CB) [> 3.9562 = 6.5937 < 8.5718] w=0.0662 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)A46.CB) [> 4.1838 = 6.9730 < 9.0649] w=0.0661 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)L70.CB) [> 4.3757 = 7.2929 < 9.4808] w=0.0645 to align # Constraint # added constraint: constraint((T0311)I12.CB, (T0311)L70.CB) [> 3.0855 = 5.1426 < 6.6853] w=0.0645 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)M66.CB) [> 4.6707 = 7.7845 < 10.1199] w=0.0616 to align # Constraint # added constraint: constraint((T0311)A47.CB, (T0311)Q71.CB) [> 3.5839 = 5.9731 < 7.7651] w=0.0616 to align # Constraint # added constraint: constraint((T0311)L48.CB, (T0311)L70.CB) [> 2.8611 = 4.7685 < 6.1990] w=0.0616 to align # Constraint # added constraint: constraint((T0311)L48.CB, (T0311)Q71.CB) [> 3.5243 = 5.8739 < 7.6360] w=0.0616 to align # Constraint # added constraint: constraint((T0311)T49.CB, (T0311)Q71.CB) [> 4.3815 = 7.3026 < 9.4934] w=0.0616 to align # Constraint # added constraint: constraint((T0311)F27.CB, (T0311)A79.CB) [> 2.9858 = 4.9763 < 6.4692] w=0.0571 to align # Constraint # added constraint: constraint((T0311)P9.CB, (T0311)A47.CB) [> 3.8485 = 6.4142 < 8.3384] w=0.0552 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)L56.CB) [> 3.0503 = 5.0838 < 6.6089] w=0.0551 to align # Constraint # added constraint: constraint((T0311)P50.CB, (T0311)A79.CB) [> 3.2510 = 5.4184 < 7.0439] w=0.0551 to align # Constraint # added constraint: constraint((T0311)P50.CB, (T0311)V83.CB) [> 3.2293 = 5.3821 < 6.9968] w=0.0551 to align # Constraint # added constraint: constraint((T0311)A53.CB, (T0311)A79.CB) [> 3.2071 = 5.3452 < 6.9487] w=0.0551 to align # Constraint # added constraint: constraint((T0311)P9.CB, (T0311)L68.CB) [> 4.2006 = 7.0009 < 9.1012] w=0.0534 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)K55.CB) [> 4.1285 = 6.8808 < 8.9450] w=0.0481 to align # Constraint # added constraint: constraint((T0311)T49.CB, (T0311)A79.CB) [> 4.5292 = 7.5487 < 9.8133] w=0.0441 to align # Constraint # added constraint: constraint((T0311)S63.CB, (T0311)E80.CB) [> 4.3087 = 7.1812 < 9.3356] w=0.0441 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)L76.CB) [> 3.4190 = 5.6983 < 7.4078] w=0.0438 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)M52.CB) [> 4.5337 = 7.5562 < 9.8230] w=0.0364 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)M66.CB) [> 4.4717 = 7.4528 < 9.6887] w=0.0331 to align # Constraint # added constraint: constraint((T0311)M52.CB, (T0311)L76.CB) [> 3.6528 = 6.0880 < 7.9145] w=0.0330 to align # Constraint # added constraint: constraint((T0311)I54.CB, (T0311)E78.CB) [> 3.9641 = 6.6069 < 8.5889] w=0.0328 to align # Constraint # added constraint: constraint((T0311)L20.CB, (T0311)S62.CB) [> 4.7973 = 7.9955 < 10.3941] w=0.0313 to align # Constraint # added constraint: constraint((T0311)S39.CB, (T0311)I54.CB) [> 4.1671 = 6.9452 < 9.0288] w=0.0310 to align # Constraint # added constraint: constraint((T0311)P64.CB, (T0311)L76.CB) [> 2.9645 = 4.9408 < 6.4231] w=0.0308 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)V58.CB) [> 3.2030 = 5.3384 < 6.9399] w=0.0231 to align # Constraint # added constraint: constraint((T0311)E51.CB, (T0311)A73.CB) [> 4.2503 = 7.0839 < 9.2091] w=0.0221 to align # Constraint # added constraint: constraint((T0311)T49.CB, (T0311)A73.CB) [> 4.0712 = 6.7854 < 8.8210] w=0.0221 to align # Constraint # added constraint: constraint((T0311)A53.CB, (T0311)L76.CB) [> 4.1573 = 6.9289 < 9.0075] w=0.0219 to align # Constraint # added constraint: constraint((T0311)E51.CB, (T0311)S75.CB) [> 3.9380 = 6.5633 < 8.5323] w=0.0217 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)I54.CB) [> 4.3478 = 7.2463 < 9.4202] w=0.0197 to align # Constraint # added constraint: constraint((T0311)L42.CB, (T0311)I54.CB) [> 3.2140 = 5.3566 < 6.9636] w=0.0197 to align # Constraint # added constraint: constraint((T0311)V58.CB, (T0311)L68.CB) [> 3.3155 = 5.5258 < 7.1835] w=0.0180 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)L76.CB) [> 3.9550 = 6.5918 < 8.5693] w=0.0155 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)L68.CB) [> 4.4745 = 7.4574 < 9.6946] w=0.0147 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)N69.CB) [> 4.2705 = 7.1175 < 9.2528] w=0.0147 to align # Constraint # added constraint: constraint((T0311)K55.CB, (T0311)L68.CB) [> 4.0332 = 6.7220 < 8.7386] w=0.0147 to align # Constraint # added constraint: constraint((T0311)R40.CB, (T0311)E51.CB) [> 4.0755 = 6.7925 < 8.8303] w=0.0145 to align # Constraint # added constraint: constraint((T0311)A28.CB, (T0311)L41.CB) [> 4.6088 = 7.6814 < 9.9858] w=0.0134 to align # Constraint # added constraint: constraint((T0311)P50.CB, (T0311)Q65.CB) [> 4.0214 = 6.7023 < 8.7130] w=0.0134 to align # Constraint # added constraint: constraint((T0311)L41.CB, (T0311)P50.CB) [> 4.4770 = 7.4616 < 9.7001] w=0.0112 to align # Constraint # added constraint: constraint((T0311)T49.CB, (T0311)V83.CB) [> 4.5464 = 7.5773 < 9.8504] w=0.0110 to align # Constraint # added constraint: constraint((T0311)M66.CB, (T0311)L91.CB) [> 3.7954 = 6.3257 < 8.2234] w=0.0110 to align # Constraint # added constraint: constraint((T0311)K45.CB, (T0311)I54.CB) [> 3.8407 = 6.4012 < 8.3215] w=0.0110 to align # Constraint # added constraint: constraint((T0311)W74.CB, (T0311)R87.CB) [> 4.7002 = 7.8336 < 10.1837] w=0.0110 to align # Constraint # added constraint: constraint((T0311)L70.CB, (T0311)L91.CB) [> 4.7582 = 7.9303 < 10.3094] w=0.0110 to align # Constraint # added constraint: constraint((T0311)W67.CB, (T0311)L91.CB) [> 3.5414 = 5.9023 < 7.6730] w=0.0110 to align # Constraint # added constraint: constraint((T0311)L24.CB, (T0311)R87.CB) [> 4.6218 = 7.7030 < 10.0139] w=0.0109 to align # Constraint # added constraint: constraint((T0311)P50.CB, (T0311)W74.CB) [> 3.7683 = 6.2805 < 8.1646] w=0.0109 to align # Constraint # added constraint: constraint((T0311)I13.CB, (T0311)W74.CB) [> 3.8897 = 6.4829 < 8.4278] w=0.0089 to align # Constraint # added constraint: constraint((T0311)S16.CB, (T0311)W74.CB) [> 4.1224 = 6.8707 < 8.9319] w=0.0089 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0311/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0311/decoys/ # ReadConformPDB reading from PDB file fromTry1cTermRotAndCap.renum.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry4breakatS75.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file helixDownFromTry6.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1utxA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1utxA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2b5aA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2b5aA # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 43, because occupancy 1 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)D84.O and (T0311)V85.N only 0.000 apart, marking (T0311)V85.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)V22.O and (T0311)S23.N only 0.000 apart, marking (T0311)S23.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 269 model score -0.5331 model score -0.5413 model score -0.5315 model score -0.2293 model score -0.2292 model score -0.0191 model score 0.4400 model score -0.3919 model score -0.2012 model score -0.0114 model score -0.3752 model score -0.2119 model score -0.2783 model score -0.2214 model score -0.2494 model score -0.2248 model score -0.2071 model score -0.4864 model score -0.2169 model score -0.4069 model score -0.5659 model score 0.4268 model score -0.4807 model score -0.3155 model score -0.5119 model score 1.1100 model score 0.9551 model score 0.8613 model score 0.4546 model score 0.3955 model score -0.0348 model score -0.3661 model score -0.3695 model score -0.3661 model score -0.3748 model score -0.3750 model score -0.4938 model score -0.5445 model score -0.5559 model score -0.4857 model score -0.5091 model score 0.3537 model score -0.4239 model score -0.0874 model score 0.0156 model score -0.0630 model score 1.5453 model score 1.2687 model score 1.2787 model score 1.2691 model score 1.2719 model score 1.2719 model score -0.4102 model score -0.4788 model score -0.4738 model score -0.4233 model score -0.4061 model score -0.3211 model score -0.4938 model score -0.5445 model score -0.5559 model score -0.5091 model score -0.5580 model score -0.4966 model score -0.5376 model score -0.4957 model score -0.4454 model score 1.2607 model score 1.2623 model score 1.2734 model score 1.2584 model score 1.2572 model score 1.2607 model score 1.2734 model score 1.2623 model score 1.2623 model score 1.2584 model score 2.0240 model score 2.1730 model score 1.6386 model score 2.0751 model score 1.4324 model score -0.3482 model score -0.1442 model score -0.3297 model score -0.0484 model score -0.3476 model score 1.2707 model score 1.2590 model score 1.2734 model score 1.2623 model score 1.2607 model score -0.5519 model score -0.4121 model score -0.4553 model score -0.5247 model score -0.4319 model score -0.5285 model score -0.5207 model score -0.4781 model score -0.5260 model score -0.3156 model score -0.5646 model score -0.5702 model score -0.5702 model score -0.5342 model score 0.0143 model score -0.4252 model score -0.1189 model score 1.4967 model score -0.4960 model score -0.4361 model score -0.1801 model score 0.0294 model score -0.5235 model score 1.2784 model score 1.6315 model score -0.4598 model score -0.4458 model score -0.4168 model score -0.3702 model score -0.2925 model score -0.3881 model score -0.3171 model score -0.3432 model score -0.3130 model score -0.4960 model score 1.4112 model score 1.2092 model score 1.0912 model score 1.3194 model score 1.2883 model score 0.2731 model score 1.4779 model score 0.2198 model score 1.4687 model score -0.4993 model score -0.4993 model score -0.1449 model score -0.4362 model score 0.0529 model score -0.5448 model score -0.5556 model score -0.6001 model score -0.5420 model score -0.5849 model score -0.5564 model score -0.3650 model score -0.4799 model score -0.4887 model score -0.4887 model score -0.4781 model score -0.4887 model score -0.5408 model score -0.4873 model score -0.4713 model score -0.5215 model score -0.4814 model score -0.4709 model score -0.4617 model score -0.4682 model score -0.5103 model score -0.4746 model score -0.3464 model score 0.0143 model score -0.3742 model score -0.3044 model score 0.3871 model score -0.4614 model score -0.4806 model score -0.4575 model score -0.3877 model score -0.1042 model score -0.5294 model score -0.4636 model score -0.4512 model score -0.4795 model score -0.5215 model score -0.4019 model score -0.5189 model score -0.4478 model score -0.5232 model score -0.4795 model score 1.2771 model score 1.2572 model score 1.2771 model score 1.2578 model score 1.2584 model score 1.2771 model score 1.2574 model score 1.2573 model score 1.2574 model score 1.2581 model score -0.5281 model score -0.5277 model score -0.2474 model score -0.0714 model score -0.2361 model score -0.4802 model score -0.4746 model score -0.4371 model score -0.2633 model score -0.4501 model score -0.4534 model score -0.4802 model score -0.4694 model score -0.4371 model score -0.2633 model score -0.2633 model score -0.4695 model score -0.4371 model score -0.3994 model score -0.4206 model score 1.2579 model score 1.2584 model score 1.2707 model score 1.2607 model score 1.2586 model score -0.5579 model score 1.2579 model score 1.2584 model score 1.2707 model score 1.2586 model score 1.2582 model score -0.4941 model score -0.4261 model score -0.4339 model score -0.5215 model score -0.4633 model score -0.5216 model score -0.5306 model score 1.2582 model score 1.2734 model score 1.2584 model score 1.2584 model score 1.2771 model score 1.2579 model score 1.2586 model score 1.2584 model score 1.2578 model score 1.2607 model score -0.4828 model score -0.5388 model score -0.5390 model score -0.3951 model score -0.1962 model score 1.3851 model score 1.7247 model score 1.5923 model score 1.4778 model score 1.8308 model score -0.5561 model score -0.3666 model score -0.4053 model score -0.5094 model score -0.4797 model score -0.4379 model score -0.2707 model score -0.4280 model score -0.1937 model score -0.5213 model score -0.4431 model score -0.2309 model score -0.0815 model score -0.4441 model score -0.3785 model score -0.5364 model score 0.1479 model score -0.4518 weight: 0.9783 eval: -0.5331 min: -0.6001 max: 2.1730 weight: 0.9809 eval: -0.5413 min: -0.6001 max: 2.1730 weight: 0.9778 eval: -0.5315 min: -0.6001 max: 2.1730 weight: 0.8797 eval: -0.2293 min: -0.6001 max: 2.1730 weight: 0.8796 eval: -0.2292 min: -0.6001 max: 2.1730 weight: 0.8114 eval: -0.0191 min: -0.6001 max: 2.1730 weight: 0.6624 eval: 0.4400 min: -0.6001 max: 2.1730 weight: 0.9324 eval: -0.3919 min: -0.6001 max: 2.1730 weight: 0.8705 eval: -0.2012 min: -0.6001 max: 2.1730 weight: 0.8089 eval: -0.0114 min: -0.6001 max: 2.1730 weight: 0.9270 eval: -0.3752 min: -0.6001 max: 2.1730 weight: 0.8740 eval: -0.2119 min: -0.6001 max: 2.1730 weight: 0.8956 eval: -0.2783 min: -0.6001 max: 2.1730 weight: 0.8771 eval: -0.2214 min: -0.6001 max: 2.1730 weight: 0.8862 eval: -0.2494 min: -0.6001 max: 2.1730 weight: 0.8782 eval: -0.2248 min: -0.6001 max: 2.1730 weight: 0.8725 eval: -0.2071 min: -0.6001 max: 2.1730 weight: 0.9631 eval: -0.4864 min: -0.6001 max: 2.1730 weight: 0.8756 eval: -0.2169 min: -0.6001 max: 2.1730 weight: 0.9373 eval: -0.4069 min: -0.6001 max: 2.1730 weight: 0.9889 eval: -0.5659 min: -0.6001 max: 2.1730 weight: 0.6667 eval: 0.4268 min: -0.6001 max: 2.1730 weight: 0.9612 eval: -0.4807 min: -0.6001 max: 2.1730 weight: 0.9076 eval: -0.3155 min: -0.6001 max: 2.1730 weight: 0.9714 eval: -0.5119 min: -0.6001 max: 2.1730 weight: 0.4450 eval: 1.1100 min: -0.6001 max: 2.1730 weight: 0.4953 eval: 0.9551 min: -0.6001 max: 2.1730 weight: 0.5257 eval: 0.8613 min: -0.6001 max: 2.1730 weight: 0.6577 eval: 0.4546 min: -0.6001 max: 2.1730 weight: 0.6769 eval: 0.3955 min: -0.6001 max: 2.1730 weight: 0.8165 eval: -0.0348 min: -0.6001 max: 2.1730 weight: 0.9241 eval: -0.3661 min: -0.6001 max: 2.1730 weight: 0.9252 eval: -0.3695 min: -0.6001 max: 2.1730 weight: 0.9241 eval: -0.3661 min: -0.6001 max: 2.1730 weight: 0.9269 eval: -0.3748 min: -0.6001 max: 2.1730 weight: 0.9270 eval: -0.3750 min: -0.6001 max: 2.1730 weight: 0.9655 eval: -0.4938 min: -0.6001 max: 2.1730 weight: 0.9820 eval: -0.5445 min: -0.6001 max: 2.1730 weight: 0.9857 eval: -0.5559 min: -0.6001 max: 2.1730 weight: 0.9629 eval: -0.4857 min: -0.6001 max: 2.1730 weight: 0.9705 eval: -0.5091 min: -0.6001 max: 2.1730 weight: 0.6905 eval: 0.3537 min: -0.6001 max: 2.1730 weight: 0.9428 eval: -0.4239 min: -0.6001 max: 2.1730 weight: 0.8336 eval: -0.0874 min: -0.6001 max: 2.1730 weight: 0.8002 eval: 0.0156 min: -0.6001 max: 2.1730 weight: 0.8257 eval: -0.0630 min: -0.6001 max: 2.1730 weight: 0.3037 eval: 1.5453 min: -0.6001 max: 2.1730 weight: 0.3935 eval: 1.2687 min: -0.6001 max: 2.1730 weight: 0.3902 eval: 1.2787 min: -0.6001 max: 2.1730 weight: 0.3934 eval: 1.2691 min: -0.6001 max: 2.1730 weight: 0.3924 eval: 1.2719 min: -0.6001 max: 2.1730 weight: 0.3924 eval: 1.2719 min: -0.6001 max: 2.1730 weight: 0.9384 eval: -0.4102 min: -0.6001 max: 2.1730 weight: 0.9606 eval: -0.4788 min: -0.6001 max: 2.1730 weight: 0.9590 eval: -0.4738 min: -0.6001 max: 2.1730 weight: 0.9426 eval: -0.4233 min: -0.6001 max: 2.1730 weight: 0.9370 eval: -0.4061 min: -0.6001 max: 2.1730 weight: 0.9094 eval: -0.3211 min: -0.6001 max: 2.1730 weight: 0.9655 eval: -0.4938 min: -0.6001 max: 2.1730 weight: 0.9820 eval: -0.5445 min: -0.6001 max: 2.1730 weight: 0.9857 eval: -0.5559 min: -0.6001 max: 2.1730 weight: 0.9705 eval: -0.5091 min: -0.6001 max: 2.1730 weight: 0.9863 eval: -0.5580 min: -0.6001 max: 2.1730 weight: 0.9664 eval: -0.4966 min: -0.6001 max: 2.1730 weight: 0.9797 eval: -0.5376 min: -0.6001 max: 2.1730 weight: 0.9661 eval: -0.4957 min: -0.6001 max: 2.1730 weight: 0.9498 eval: -0.4454 min: -0.6001 max: 2.1730 weight: 0.3961 eval: 1.2607 min: -0.6001 max: 2.1730 weight: 0.3955 eval: 1.2623 min: -0.6001 max: 2.1730 weight: 0.3920 eval: 1.2734 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3972 eval: 1.2572 min: -0.6001 max: 2.1730 weight: 0.3961 eval: 1.2607 min: -0.6001 max: 2.1730 weight: 0.3920 eval: 1.2734 min: -0.6001 max: 2.1730 weight: 0.3955 eval: 1.2623 min: -0.6001 max: 2.1730 weight: 0.3955 eval: 1.2623 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.1483 eval: 2.0240 min: -0.6001 max: 2.1730 weight: 0.1000 eval: 2.1730 min: -0.6001 max: 2.1730 weight: 0.2734 eval: 1.6386 min: -0.6001 max: 2.1730 weight: 0.1318 eval: 2.0751 min: -0.6001 max: 2.1730 weight: 0.3403 eval: 1.4324 min: -0.6001 max: 2.1730 weight: 0.9183 eval: -0.3482 min: -0.6001 max: 2.1730 weight: 0.8521 eval: -0.1442 min: -0.6001 max: 2.1730 weight: 0.9122 eval: -0.3297 min: -0.6001 max: 2.1730 weight: 0.8209 eval: -0.0484 min: -0.6001 max: 2.1730 weight: 0.9180 eval: -0.3476 min: -0.6001 max: 2.1730 weight: 0.3928 eval: 1.2707 min: -0.6001 max: 2.1730 weight: 0.3966 eval: 1.2590 min: -0.6001 max: 2.1730 weight: 0.3920 eval: 1.2734 min: -0.6001 max: 2.1730 weight: 0.3955 eval: 1.2623 min: -0.6001 max: 2.1730 weight: 0.3961 eval: 1.2607 min: -0.6001 max: 2.1730 weight: 0.9844 eval: -0.5519 min: -0.6001 max: 2.1730 weight: 0.9390 eval: -0.4121 min: -0.6001 max: 2.1730 weight: 0.9530 eval: -0.4553 min: -0.6001 max: 2.1730 weight: 0.9755 eval: -0.5247 min: -0.6001 max: 2.1730 weight: 0.9454 eval: -0.4319 min: -0.6001 max: 2.1730 weight: 0.9768 eval: -0.5285 min: -0.6001 max: 2.1730 weight: 0.9742 eval: -0.5207 min: -0.6001 max: 2.1730 weight: 0.9604 eval: -0.4781 min: -0.6001 max: 2.1730 weight: 0.9760 eval: -0.5260 min: -0.6001 max: 2.1730 weight: 0.9077 eval: -0.3156 min: -0.6001 max: 2.1730 weight: 0.9885 eval: -0.5646 min: -0.6001 max: 2.1730 weight: 0.9903 eval: -0.5702 min: -0.6001 max: 2.1730 weight: 0.9903 eval: -0.5702 min: -0.6001 max: 2.1730 weight: 0.9786 eval: -0.5342 min: -0.6001 max: 2.1730 weight: 0.8006 eval: 0.0143 min: -0.6001 max: 2.1730 weight: 0.9433 eval: -0.4252 min: -0.6001 max: 2.1730 weight: 0.8438 eval: -0.1189 min: -0.6001 max: 2.1730 weight: 0.3195 eval: 1.4967 min: -0.6001 max: 2.1730 weight: 0.9662 eval: -0.4960 min: -0.6001 max: 2.1730 weight: 0.9468 eval: -0.4361 min: -0.6001 max: 2.1730 weight: 0.8637 eval: -0.1801 min: -0.6001 max: 2.1730 weight: 0.7957 eval: 0.0294 min: -0.6001 max: 2.1730 weight: 0.9752 eval: -0.5235 min: -0.6001 max: 2.1730 weight: 0.3903 eval: 1.2784 min: -0.6001 max: 2.1730 weight: 0.2757 eval: 1.6315 min: -0.6001 max: 2.1730 weight: 0.9545 eval: -0.4598 min: -0.6001 max: 2.1730 weight: 0.9499 eval: -0.4458 min: -0.6001 max: 2.1730 weight: 0.9405 eval: -0.4168 min: -0.6001 max: 2.1730 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-0.6001 max: 2.1730 weight: 0.9609 eval: -0.4795 min: -0.6001 max: 2.1730 weight: 0.9745 eval: -0.5215 min: -0.6001 max: 2.1730 weight: 0.9357 eval: -0.4019 min: -0.6001 max: 2.1730 weight: 0.9736 eval: -0.5189 min: -0.6001 max: 2.1730 weight: 0.9506 eval: -0.4478 min: -0.6001 max: 2.1730 weight: 0.9751 eval: -0.5232 min: -0.6001 max: 2.1730 weight: 0.9609 eval: -0.4795 min: -0.6001 max: 2.1730 weight: 0.3908 eval: 1.2771 min: -0.6001 max: 2.1730 weight: 0.3972 eval: 1.2572 min: -0.6001 max: 2.1730 weight: 0.3908 eval: 1.2771 min: -0.6001 max: 2.1730 weight: 0.3970 eval: 1.2578 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3908 eval: 1.2771 min: -0.6001 max: 2.1730 weight: 0.3971 eval: 1.2574 min: -0.6001 max: 2.1730 weight: 0.3972 eval: 1.2573 min: -0.6001 max: 2.1730 weight: 0.3972 eval: 1.2574 min: -0.6001 max: 2.1730 weight: 0.3969 eval: 1.2581 min: -0.6001 max: 2.1730 weight: 0.9766 eval: -0.5281 min: -0.6001 max: 2.1730 weight: 0.9765 eval: -0.5277 min: -0.6001 max: 2.1730 weight: 0.8855 eval: -0.2474 min: -0.6001 max: 2.1730 weight: 0.8284 eval: -0.0714 min: -0.6001 max: 2.1730 weight: 0.8819 eval: -0.2361 min: -0.6001 max: 2.1730 weight: 0.9611 eval: -0.4802 min: -0.6001 max: 2.1730 weight: 0.9593 eval: -0.4746 min: -0.6001 max: 2.1730 weight: 0.9471 eval: -0.4371 min: -0.6001 max: 2.1730 weight: 0.8907 eval: -0.2633 min: -0.6001 max: 2.1730 weight: 0.9513 eval: -0.4501 min: -0.6001 max: 2.1730 weight: 0.9524 eval: -0.4534 min: -0.6001 max: 2.1730 weight: 0.9611 eval: -0.4802 min: -0.6001 max: 2.1730 weight: 0.9576 eval: -0.4694 min: -0.6001 max: 2.1730 weight: 0.9471 eval: -0.4371 min: -0.6001 max: 2.1730 weight: 0.8907 eval: -0.2633 min: -0.6001 max: 2.1730 weight: 0.8907 eval: -0.2633 min: -0.6001 max: 2.1730 weight: 0.9576 eval: -0.4695 min: -0.6001 max: 2.1730 weight: 0.9471 eval: -0.4371 min: -0.6001 max: 2.1730 weight: 0.9349 eval: -0.3994 min: -0.6001 max: 2.1730 weight: 0.9418 eval: -0.4206 min: -0.6001 max: 2.1730 weight: 0.3970 eval: 1.2579 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3928 eval: 1.2707 min: -0.6001 max: 2.1730 weight: 0.3961 eval: 1.2607 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2586 min: -0.6001 max: 2.1730 weight: 0.9863 eval: -0.5579 min: -0.6001 max: 2.1730 weight: 0.3970 eval: 1.2579 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3928 eval: 1.2707 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2586 min: -0.6001 max: 2.1730 weight: 0.3969 eval: 1.2582 min: -0.6001 max: 2.1730 weight: 0.9656 eval: -0.4941 min: -0.6001 max: 2.1730 weight: 0.9435 eval: -0.4261 min: -0.6001 max: 2.1730 weight: 0.9461 eval: -0.4339 min: -0.6001 max: 2.1730 weight: 0.9745 eval: -0.5215 min: -0.6001 max: 2.1730 weight: 0.9556 eval: -0.4633 min: -0.6001 max: 2.1730 weight: 0.9745 eval: -0.5216 min: -0.6001 max: 2.1730 weight: 0.9774 eval: -0.5306 min: -0.6001 max: 2.1730 weight: 0.3969 eval: 1.2582 min: -0.6001 max: 2.1730 weight: 0.3920 eval: 1.2734 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3908 eval: 1.2771 min: -0.6001 max: 2.1730 weight: 0.3970 eval: 1.2579 min: -0.6001 max: 2.1730 weight: 0.3967 eval: 1.2586 min: -0.6001 max: 2.1730 weight: 0.3968 eval: 1.2584 min: -0.6001 max: 2.1730 weight: 0.3970 eval: 1.2578 min: -0.6001 max: 2.1730 weight: 0.3961 eval: 1.2607 min: -0.6001 max: 2.1730 weight: 0.9619 eval: -0.4828 min: -0.6001 max: 2.1730 weight: 0.9801 eval: -0.5388 min: -0.6001 max: 2.1730 weight: 0.9802 eval: -0.5390 min: -0.6001 max: 2.1730 weight: 0.9335 eval: -0.3951 min: -0.6001 max: 2.1730 weight: 0.8689 eval: -0.1962 min: -0.6001 max: 2.1730 weight: 0.3557 eval: 1.3851 min: -0.6001 max: 2.1730 weight: 0.2455 eval: 1.7247 min: -0.6001 max: 2.1730 weight: 0.2884 eval: 1.5923 min: -0.6001 max: 2.1730 weight: 0.3256 eval: 1.4778 min: -0.6001 max: 2.1730 weight: 0.2111 eval: 1.8308 min: -0.6001 max: 2.1730 weight: 0.9857 eval: -0.5561 min: -0.6001 max: 2.1730 weight: 0.9242 eval: -0.3666 min: -0.6001 max: 2.1730 weight: 0.9368 eval: -0.4053 min: -0.6001 max: 2.1730 weight: 0.9706 eval: -0.5094 min: -0.6001 max: 2.1730 weight: 0.9609 eval: -0.4797 min: -0.6001 max: 2.1730 weight: 0.9474 eval: -0.4379 min: -0.6001 max: 2.1730 weight: 0.8931 eval: -0.2707 min: -0.6001 max: 2.1730 weight: 0.9442 eval: -0.4280 min: -0.6001 max: 2.1730 weight: 0.8681 eval: -0.1937 min: -0.6001 max: 2.1730 weight: 0.9744 eval: -0.5213 min: -0.6001 max: 2.1730 weight: 0.9490 eval: -0.4431 min: -0.6001 max: 2.1730 weight: 0.8802 eval: -0.2309 min: -0.6001 max: 2.1730 weight: 0.8317 eval: -0.0815 min: -0.6001 max: 2.1730 weight: 0.9494 eval: -0.4441 min: -0.6001 max: 2.1730 weight: 0.9281 eval: -0.3785 min: -0.6001 max: 2.1730 weight: 0.9793 eval: -0.5364 min: -0.6001 max: 2.1730 weight: 0.7572 eval: 0.1479 min: -0.6001 max: 2.1730 weight: 0.9519 eval: -0.4518 min: -0.6001 max: 2.1730 Adding 2571 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -164.0958, CN propb: -164.0958 weights: 0.3508 constraints: 145 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 145 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 145 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 2426 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 2426 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 2571 # command: