# List of top-scoring protein chains for T0310.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bxsA 501 8.88e-52 1bpwA c.82.1.1 35357 1cw3A 494 1.54e-51 1bpwA c.82.1.1 35349 1o02A 500 1.62e-51 c.82.1.1 86499 1zumA 500 1.98e-51 1ag8A 499 2.88e-51 1bpwA c.82.1.1 35341 1bi9A 499 3.58e-51 1bpwA c.82.1.1 35337 1o04A 500 7.17e-51 c.82.1.1 86508 2d4eA 515 1.89e-50 1o9jA 501 5.61e-50 c.82.1.1 86694 1a4sA 503 1.97e-49 1bpwA c.82.1.1 35361 1wndA 495 8.68e-47 1euhA 475 7.40e-45 1euhA c.82.1.1 35369 1ad3A 452 1.04e-44 1ad3A c.82.1.1 35335 2esdA 475 1.65e-44 1t90A 486 3.39e-44 1qi1A 475 3.43e-44 1euhA c.82.1.1 35381 1uzbA 516 2.14e-43 c.82.1.1 100220 2bjkA 516 2.84e-43 1o20A 427 7.62e-41 c.82.1.1 86556 1ky8A 501 2.21e-40 c.82.1.1 77628 1uxtA 501 2.69e-40 c.82.1.1 108125 1uxvA 501 2.90e-40 c.82.1.1 108127 1vluA 468 3.20e-34 c.82.1.1 108864 1ez0A 510 4.26e-28 1eyyA c.82.1.1 35385 1kaeA 434 2.87e-06 c.82.1.2 72247 1jroB 777 6.87e-01 d.41.1.1,d.133.1.1 67141,67142 1s1iB 253 2.20e+00 i.1.1.1 105176 1f3vA 179 4.39e+00 1f3vA d.58.22.1 39382 1mb4A 370 6.12e+00 c.2.1.3,d.81.1.1 78908,78909 1ctm 250 6.42e+00 1hcz b.2.6.1,b.84.2.2 22465,28251 1hcz 252 6.68e+00 1hcz b.2.6.1,b.84.2.2 22464,28250 1vb3A 428 1.08e+01 1ihuA 589 1.22e+01 c.37.1.10,c.37.1.10 62394,62395 1f2hA 169 1.34e+01 1f3vA d.58.22.1 59612 1vcfA 332 1.58e+01 1wwkA 307 1.65e+01 1a88A 275 1.66e+01 1brt c.69.1.12 34707 1w8sA 263 1.76e+01 1wuuA 399 1.87e+01 1w8rA 263 1.92e+01 1os5A 576 2.15e+01 e.8.1.4 93475 1vkdA 338 2.31e+01 b.67.2.4 108644 1obkA 414 2.44e+01 c.117.1.1 92759 1ypwA 806 2.48e+01 1m4iA 181 2.64e+01 d.108.1.1 74457 1ojxA 263 2.67e+01 c.1.10.1 93164 1rwhA 757 2.69e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1wp5A 323 2.71e+01 1csjA 531 2.79e+01 1quvA e.8.1.4 43120 1gx5A 536 2.88e+01 e.8.1.4 70682 1objA 414 2.89e+01 c.117.1.1 92757 1gx6A 531 2.94e+01 e.8.1.4 70683 1r7rA 816 3.00e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 2gf2A 296 3.00e+01 2aplA 157 3.02e+01 1rw9A 757 3.23e+01 a.102.3.2,b.24.1.1,b.30.5.2 97964,97965,97966 2czgA 433 3.23e+01 1v8gA 329 3.25e+01 a.46.2.1,c.27.1.1 100505,100506 7mdhA 375 3.29e+01 1bmdA c.2.1.5,d.162.1.1 30130,42097 1c2pA 576 3.37e+01 1quvA e.8.1.4 43117 1quvA 578 3.40e+01 1quvA e.8.1.4 43119 1nhuA 578 3.42e+01 e.8.1.4 85723 1ujpA 271 3.42e+01 c.1.2.4 99462 1o9pA 414 3.50e+01 c.117.1.1 92681 1y7aA 449 3.53e+01 1o9nA 414 3.57e+01 c.117.1.1 92677 2ax0A 580 3.61e+01 1nrzA 164 3.68e+01 c.38.1.1 86131 1oblA 414 3.69e+01 c.117.1.1 92761 1xp8A 366 4.13e+01 1o9qA 414 4.19e+01 c.117.1.1 92683 2f3gA 168 4.24e+01 1gpr b.84.3.1 28270 1obiA 414 4.35e+01 c.117.1.1 92755 1ockA 412 4.56e+01 c.117.1.1 86802 1otuA 465 4.57e+01 f.20.1.1 87435 1vgvA 384 4.57e+01 c.87.1.3 100608 1f6dA 376 4.65e+01 1f6dA c.87.1.3 35467 1zbmA 280 4.72e+01 1suwA 249 4.81e+01 e.52.1.1 106027 1yvfA 577 4.83e+01 2g9zA 348 4.93e+01 1upaA 573 5.16e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2exyA 473 5.21e+01 1gu9A 177 5.32e+01 a.152.1.1 65540 2b9zA 74 5.36e+01 1nb4A 570 5.40e+01 e.8.1.4 85509 1ottA 465 5.56e+01 f.20.1.1 87425 1otsA 465 5.75e+01 f.20.1.1 87415 1kplA 473 5.77e+01 f.20.1.1 68782 1s0iA 648 5.80e+01 b.29.1.15,b.68.1.1 105146,105147 1h80A 464 5.97e+01 b.80.1.8 65714 1pnsC 206 6.13e+01 i.1.1.1 88170 1mucA 373 6.15e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1g19A 350 6.20e+01 2reb c.37.1.11,d.48.1.1 32284,38770 1me5A 177 6.24e+01 a.152.1.1 79024 1sxjB 323 6.25e+01 a.80.1.1,c.37.1.20 106083,106084 1f9cA 372 6.36e+01 1mucA c.1.11.2,d.54.1.1 59728,59729 1qo8A 566 6.54e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2cfyA 521 6.55e+01 2exwA 473 6.57e+01 2fedA 465 6.60e+01 1fhs 112 6.64e+01 1griA d.93.1.1 40488 1ghu 107 6.92e+01 1griA d.93.1.1 40475 1yw6A 335 6.95e+01 1u7bA 261 6.97e+01 1oc2A 348 7.07e+01 c.2.1.2 92765 2fkfA 462 7.08e+01 1p5dX 463 7.09e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1anjA 446 7.20e+01 1b8jA c.76.1.1 35008 1ldg 316 7.46e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1bm2A 117 7.53e+01 1griA d.93.1.1 40467 1fyrA 114 7.57e+01 1griA d.93.1.1 40469 1qvsA 309 7.63e+01 c.94.1.1 96441 2ez0A 473 7.69e+01 1qg1E 104 7.73e+01 1griA d.93.1.1 40489 1efuB 282 7.74e+01 1efuB d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 1xq5B 146 7.77e+01 1bmbA 123 7.79e+01 1griA d.93.1.1 40466 1umiA 184 7.80e+01 b.18.1.21 99606 1aniA 446 7.80e+01 1b8jA c.76.1.1 35018 1umhA 184 7.89e+01 b.18.1.21 99605 2a94A 321 7.90e+01 1ceqA 316 7.96e+01 1ceqA c.2.1.5,d.162.1.1 30163,42130 1xivA 323 7.97e+01 1pv1A 299 8.00e+01 1t2dA 322 8.05e+01 c.2.1.5,d.162.1.1 99084,99085 1mrp 309 8.14e+01 1mrp c.94.1.1 35796 1urjA 1136 8.14e+01 1vm7A 311 8.19e+01 c.72.1.1 108884 1t2eA 322 8.21e+01 c.2.1.5,d.162.1.1 99086,99087 1vlbA 907 8.41e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2cp5A 141 8.52e+01 1nnfA 309 8.53e+01 c.94.1.1 85903 1hjkA 449 8.55e+01 1b8jA c.76.1.1 35006 1z0sA 278 8.74e+01 1rg9A 383 8.88e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429