# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0307/
# command:# Making conformation for sequence T0307 numbered 1 through 133
Created new target T0307 from T0307.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0307/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0307//projects/compbio/experiments/protein-predict/casp7/T0307/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0307//projects/compbio/experiments/protein-predict/casp7/T0307/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0307/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0307/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0307)I35.CB, (T0307)I67.CB) [> 3.0874 = 5.1456 < 6.6894] w=1.0000 to align
# Constraint # added constraint: constraint((T0307)A63.CB, (T0307)L75.CB) [> 3.8153 = 6.3589 < 8.2665] w=0.9258 to align
# Constraint # added constraint: constraint((T0307)I40.CB, (T0307)V57.CB) [> 3.2850 = 5.4750 < 7.1175] w=0.8849 to align
# Constraint # added constraint: constraint((T0307)L60.CB, (T0307)L75.CB) [> 3.1339 = 5.2231 < 6.7901] w=0.8640 to align
# Constraint # added constraint: constraint((T0307)I40.CB, (T0307)L61.CB) [> 3.7319 = 6.2198 < 8.0857] w=0.8441 to align
# Constraint # added constraint: constraint((T0307)I35.CB, (T0307)A72.CB) [> 4.0914 = 6.8191 < 8.8648] w=0.8436 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)I101.CB) [> 3.4373 = 5.7288 < 7.4474] w=0.8180 to align
# Constraint # added constraint: constraint((T0307)A96.CB, (T0307)E105.CB) [> 4.4225 = 7.3708 < 9.5820] w=0.8140 to align
# Constraint # added constraint: constraint((T0307)K36.CB, (T0307)S66.CB) [> 3.7674 = 6.2790 < 8.1627] w=0.8068 to align
# Constraint # added constraint: constraint((T0307)L61.CB, (T0307)A72.CB) [> 3.9206 = 6.5343 < 8.4946] w=0.8004 to align
# Constraint # added constraint: constraint((T0307)K34.CB, (T0307)E68.CB) [> 3.6444 = 6.0739 < 7.8961] w=0.7308 to align
# Constraint # added constraint: constraint((T0307)T44.CB, (T0307)V57.CB) [> 3.5090 = 5.8484 < 7.6029] w=0.7279 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)E39.CB) [> 3.2745 = 5.4575 < 7.0948] w=0.6993 to align
# Constraint # added constraint: constraint((T0307)K34.CB, (T0307)I67.CB) [> 3.6458 = 6.0763 < 7.8992] w=0.6885 to align
# Constraint # added constraint: constraint((T0307)P37.CB, (T0307)L61.CB) [> 3.1922 = 5.3204 < 6.9165] w=0.6851 to align
# Constraint # added constraint: constraint((T0307)S64.CB, (T0307)L75.CB) [> 3.5483 = 5.9138 < 7.6880] w=0.6460 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)A69.CB) [> 4.0437 = 6.7395 < 8.7614] w=0.6316 to align
# Constraint # added constraint: constraint((T0307)M28.CB, (T0307)M43.CB) [> 3.8226 = 6.3709 < 8.2822] w=0.6245 to align
# Constraint # added constraint: constraint((T0307)M30.CB, (T0307)E39.CB) [> 3.7483 = 6.2472 < 8.1213] w=0.6150 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)A72.CB) [> 4.2395 = 7.0659 < 9.1857] w=0.5998 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)I76.CB) [> 4.0705 = 6.7842 < 8.8195] w=0.5960 to align
# Constraint # added constraint: constraint((T0307)M95.CB, (T0307)E105.CB) [> 3.2750 = 5.4584 < 7.0960] w=0.5929 to align
# Constraint # added constraint: constraint((T0307)A41.CB, (T0307)I52.CB) [> 3.6571 = 6.0952 < 7.9237] w=0.5408 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)V73.CB) [> 3.8660 = 6.4434 < 8.3764] w=0.5176 to align
# Constraint # added constraint: constraint((T0307)P37.CB, (T0307)V57.CB) [> 3.6600 = 6.0999 < 7.9299] w=0.5132 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)E105.CB) [> 3.4660 = 5.7766 < 7.5096] w=0.5127 to align
# Constraint # added constraint: constraint((T0307)A25.CB, (T0307)A72.CB) [> 3.7183 = 6.1971 < 8.0563] w=0.5100 to align
# Constraint # added constraint: constraint((T0307)P37.CB, (T0307)D58.CB) [> 3.8949 = 6.4914 < 8.4388] w=0.4946 to align
# Constraint # added constraint: constraint((T0307)A63.CB, (T0307)A72.CB) [> 3.6153 = 6.0255 < 7.8331] w=0.4846 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)A72.CB) [> 4.4864 = 7.4774 < 9.7206] w=0.4815 to align
# Constraint # added constraint: constraint((T0307)A107.CB, (T0307)V123.CB) [> 3.2564 = 5.4273 < 7.0555] w=0.4754 to align
# Constraint # added constraint: constraint((T0307)L106.CB, (T0307)I127.CB) [> 3.4529 = 5.7549 < 7.4813] w=0.4750 to align
# Constraint # added constraint: constraint((T0307)K26.CB, (T0307)A69.CB) [> 3.3779 = 5.6298 < 7.3188] w=0.4608 to align
# Constraint # added constraint: constraint((T0307)K23.CB, (T0307)A69.CB) [> 3.9853 = 6.6421 < 8.6348] w=0.4608 to align
# Constraint # added constraint: constraint((T0307)I40.CB, (T0307)I67.CB) [> 3.9437 = 6.5728 < 8.5446] w=0.4555 to align
# Constraint # added constraint: constraint((T0307)A41.CB, (T0307)L53.CB) [> 3.7604 = 6.2674 < 8.1476] w=0.4432 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)I76.CB) [> 4.1344 = 6.8908 < 8.9580] w=0.4347 to align
# Constraint # added constraint: constraint((T0307)G92.CA, (T0307)I101.CB) [> 3.3536 = 5.5894 < 7.2662] w=0.4283 to align
# Constraint # added constraint: constraint((T0307)A25.CB, (T0307)A69.CB) [> 3.1981 = 5.3302 < 6.9293] w=0.4274 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)V73.CB) [> 3.5408 = 5.9014 < 7.6718] w=0.4274 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)V73.CB) [> 3.8128 = 6.3547 < 8.2612] w=0.4258 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)I40.CB) [> 4.0376 = 6.7294 < 8.7482] w=0.4169 to align
# Constraint # added constraint: constraint((T0307)I76.CB, (T0307)V87.CB) [> 3.7478 = 6.2463 < 8.1202] w=0.4011 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)W109.CB) [> 3.6116 = 6.0194 < 7.8252] w=0.3960 to align
# Constraint # added constraint: constraint((T0307)L59.CB, (T0307)Y90.CB) [> 3.8513 = 6.4189 < 8.3445] w=0.3942 to align
# Constraint # added constraint: constraint((T0307)F13.CB, (T0307)V73.CB) [> 4.0531 = 6.7552 < 8.7817] w=0.3526 to align
# Constraint # added constraint: constraint((T0307)L106.CB, (T0307)V123.CB) [> 3.4362 = 5.7270 < 7.4451] w=0.3467 to align
# Constraint # added constraint: constraint((T0307)Q56.CB, (T0307)M79.CB) [> 4.0383 = 6.7305 < 8.7497] w=0.3221 to align
# Constraint # added constraint: constraint((T0307)M95.CB, (T0307)L108.CB) [> 4.3181 = 7.1968 < 9.3559] w=0.3177 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)V42.CB) [> 4.3230 = 7.2050 < 9.3665] w=0.3153 to align
# Constraint # added constraint: constraint((T0307)T19.CB, (T0307)V73.CB) [> 4.0900 = 6.8166 < 8.8616] w=0.3139 to align
# Constraint # added constraint: constraint((T0307)L59.CB, (T0307)L75.CB) [> 3.9909 = 6.6515 < 8.6469] w=0.2993 to align
# Constraint # added constraint: constraint((T0307)Q56.CB, (T0307)L75.CB) [> 4.3006 = 7.1677 < 9.3179] w=0.2993 to align
# Constraint # added constraint: constraint((T0307)M95.CB, (T0307)W109.CB) [> 4.2669 = 7.1115 < 9.2450] w=0.2874 to align
# Constraint # added constraint: constraint((T0307)F47.CB, (T0307)V57.CB) [> 3.4069 = 5.6782 < 7.3816] w=0.2785 to align
# Constraint # added constraint: constraint((T0307)A31.CB, (T0307)V42.CB) [> 3.8146 = 6.3576 < 8.2649] w=0.2784 to align
# Constraint # added constraint: constraint((T0307)L111.CB, (T0307)V123.CB) [> 3.5683 = 5.9472 < 7.7314] w=0.2776 to align
# Constraint # added constraint: constraint((T0307)L60.CB, (T0307)Q71.CB) [> 3.6476 = 6.0794 < 7.9032] w=0.2775 to align
# Constraint # added constraint: constraint((T0307)F13.CB, (T0307)A77.CB) [> 3.6485 = 6.0808 < 7.9050] w=0.2745 to align
# Constraint # added constraint: constraint((T0307)Y90.CB, (T0307)I101.CB) [> 3.8348 = 6.3914 < 8.3088] w=0.2709 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)A69.CB) [> 4.7507 = 7.9179 < 10.2933] w=0.2679 to align
# Constraint # added constraint: constraint((T0307)A63.CB, (T0307)Y86.CB) [> 4.3766 = 7.2943 < 9.4826] w=0.2648 to align
# Constraint # added constraint: constraint((T0307)I112.CB, (T0307)V123.CB) [> 4.7287 = 7.8811 < 10.2455] w=0.2647 to align
# Constraint # added constraint: constraint((T0307)G92.CA, (T0307)L106.CB) [> 3.7062 = 6.1769 < 8.0300] w=0.2597 to align
# Constraint # added constraint: constraint((T0307)Y90.CB, (T0307)L108.CB) [> 4.5111 = 7.5186 < 9.7742] w=0.2597 to align
# Constraint # added constraint: constraint((T0307)M28.CB, (T0307)E39.CB) [> 3.0492 = 5.0820 < 6.6066] w=0.2418 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)L60.CB) [> 4.2601 = 7.1002 < 9.2302] w=0.2409 to align
# Constraint # added constraint: constraint((T0307)I76.CB, (T0307)Y86.CB) [> 4.4334 = 7.3890 < 9.6057] w=0.2383 to align
# Constraint # added constraint: constraint((T0307)D58.CB, (T0307)I67.CB) [> 3.4063 = 5.6772 < 7.3804] w=0.2374 to align
# Constraint # added constraint: constraint((T0307)F50.CB, (T0307)M79.CB) [> 3.7275 = 6.2124 < 8.0762] w=0.2356 to align
# Constraint # added constraint: constraint((T0307)F47.CB, (T0307)L60.CB) [> 3.9246 = 6.5410 < 8.5034] w=0.2303 to align
# Constraint # added constraint: constraint((T0307)T44.CB, (T0307)L53.CB) [> 3.3461 = 5.5768 < 7.2499] w=0.2282 to align
# Constraint # added constraint: constraint((T0307)Q56.CB, (T0307)T114.CB) [> 3.9502 = 6.5837 < 8.5589] w=0.2264 to align
# Constraint # added constraint: constraint((T0307)A63.CB, (T0307)S89.CB) [> 3.8219 = 6.3698 < 8.2808] w=0.2264 to align
# Constraint # added constraint: constraint((T0307)A63.CB, (T0307)Y90.CB) [> 2.8612 = 4.7687 < 6.1993] w=0.2264 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)L108.CB) [> 3.0737 = 5.1228 < 6.6596] w=0.2264 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)W109.CB) [> 3.3654 = 5.6089 < 7.2916] w=0.2212 to align
# Constraint # added constraint: constraint((T0307)M28.CB, (T0307)V42.CB) [> 3.8619 = 6.4364 < 8.3673] w=0.2135 to align
# Constraint # added constraint: constraint((T0307)M30.CB, (T0307)M43.CB) [> 3.7188 = 6.1980 < 8.0574] w=0.2130 to align
# Constraint # added constraint: constraint((T0307)M24.CB, (T0307)I76.CB) [> 4.6174 = 7.6957 < 10.0044] w=0.2097 to align
# Constraint # added constraint: constraint((T0307)D55.CB, (T0307)M95.CB) [> 4.4295 = 7.3824 < 9.5971] w=0.2079 to align
# Constraint # added constraint: constraint((T0307)M95.CB, (T0307)L111.CB) [> 4.5478 = 7.5797 < 9.8536] w=0.2040 to align
# Constraint # added constraint: constraint((T0307)F47.CB, (T0307)Q56.CB) [> 3.6737 = 6.1229 < 7.9597] w=0.2035 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)A31.CB) [> 3.6120 = 6.0200 < 7.8260] w=0.1944 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)L108.CB) [> 4.0395 = 6.7324 < 8.7522] w=0.1932 to align
# Constraint # added constraint: constraint((T0307)R45.CB, (T0307)Q54.CB) [> 4.0347 = 6.7245 < 8.7418] w=0.1916 to align
# Constraint # added constraint: constraint((T0307)A88.CB, (T0307)S97.CB) [> 4.3404 = 7.2340 < 9.4043] w=0.1914 to align
# Constraint # added constraint: constraint((T0307)A25.CB, (T0307)F47.CB) [> 3.2144 = 5.3573 < 6.9646] w=0.1909 to align
# Constraint # added constraint: constraint((T0307)A107.CB, (T0307)T120.CB) [> 4.0806 = 6.8011 < 8.8414] w=0.1861 to align
# Constraint # added constraint: constraint((T0307)L59.CB, (T0307)L111.CB) [> 3.6604 = 6.1006 < 7.9308] w=0.1849 to align
# Constraint # added constraint: constraint((T0307)L59.CB, (T0307)L108.CB) [> 3.7154 = 6.1923 < 8.0500] w=0.1849 to align
# Constraint # added constraint: constraint((T0307)I52.CB, (T0307)L115.CB) [> 3.8475 = 6.4125 < 8.3362] w=0.1849 to align
# Constraint # added constraint: constraint((T0307)A25.CB, (T0307)V73.CB) [> 4.6838 = 7.8063 < 10.1481] w=0.1775 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)I76.CB) [> 4.1073 = 6.8455 < 8.8991] w=0.1716 to align
# Constraint # added constraint: constraint((T0307)I52.CB, (T0307)I112.CB) [> 4.1533 = 6.9222 < 8.9989] w=0.1678 to align
# Constraint # added constraint: constraint((T0307)L60.CB, (T0307)A74.CB) [> 4.1035 = 6.8392 < 8.8910] w=0.1678 to align
# Constraint # added constraint: constraint((T0307)A107.CB, (T0307)I127.CB) [> 3.2860 = 5.4767 < 7.1197] w=0.1678 to align
# Constraint # added constraint: constraint((T0307)A25.CB, (T0307)K36.CB) [> 4.0483 = 6.7472 < 8.7713] w=0.1620 to align
# Constraint # added constraint: constraint((T0307)T12.CB, (T0307)R78.CB) [> 3.4451 = 5.7418 < 7.4643] w=0.1618 to align
# Constraint # added constraint: constraint((T0307)T12.CB, (T0307)A77.CB) [> 2.9280 = 4.8800 < 6.3440] w=0.1618 to align
# Constraint # added constraint: constraint((T0307)L111.CB, (T0307)T122.CB) [> 4.5345 = 7.5575 < 9.8247] w=0.1603 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)A31.CB) [> 4.3111 = 7.1852 < 9.3407] w=0.1572 to align
# Constraint # added constraint: constraint((T0307)F50.CB, (T0307)I76.CB) [> 3.9313 = 6.5522 < 8.5179] w=0.1550 to align
# Constraint # added constraint: constraint((T0307)R49.CB, (T0307)C116.CB) [> 3.7332 = 6.2221 < 8.0887] w=0.1547 to align
# Constraint # added constraint: constraint((T0307)V87.CB, (T0307)L115.CB) [> 4.6058 = 7.6764 < 9.9793] w=0.1547 to align
# Constraint # added constraint: constraint((T0307)L111.CB, (T0307)A126.CB) [> 4.4886 = 7.4810 < 9.7253] w=0.1509 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)L106.CB) [> 3.9082 = 6.5137 < 8.4678] w=0.1502 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)L108.CB) [> 4.3138 = 7.1896 < 9.3465] w=0.1502 to align
# Constraint # added constraint: constraint((T0307)I112.CB, (T0307)M124.CB) [> 3.9464 = 6.5774 < 8.5506] w=0.1493 to align
# Constraint # added constraint: constraint((T0307)T110.CB, (T0307)V123.CB) [> 3.9836 = 6.6393 < 8.6312] w=0.1357 to align
# Constraint # added constraint: constraint((T0307)T19.CB, (T0307)S64.CB) [> 3.3027 = 5.5045 < 7.1558] w=0.1343 to align
# Constraint # added constraint: constraint((T0307)I22.CB, (T0307)L61.CB) [> 3.3143 = 5.5238 < 7.1809] w=0.1316 to align
# Constraint # added constraint: constraint((T0307)V42.CB, (T0307)L53.CB) [> 4.0093 = 6.6822 < 8.6869] w=0.1262 to align
# Constraint # added constraint: constraint((T0307)L106.CB, (T0307)M130.CB) [> 3.3927 = 5.6545 < 7.3508] w=0.1226 to align
# Constraint # added constraint: constraint((T0307)Q54.CB, (T0307)A96.CB) [> 4.0484 = 6.7473 < 8.7715] w=0.1202 to align
# Constraint # added constraint: constraint((T0307)V73.CB, (T0307)A96.CB) [> 4.5362 = 7.5604 < 9.8285] w=0.1200 to align
# Constraint # added constraint: constraint((T0307)T114.CB, (T0307)V123.CB) [> 3.4533 = 5.7555 < 7.4822] w=0.1174 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)W109.CB) [> 3.7320 = 6.2201 < 8.0861] w=0.1172 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)I112.CB) [> 3.9040 = 6.5066 < 8.4586] w=0.1161 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)A107.CB) [> 3.8499 = 6.4164 < 8.3413] w=0.1155 to align
# Constraint # added constraint: constraint((T0307)M95.CB, (T0307)A107.CB) [> 4.3546 = 7.2577 < 9.4350] w=0.1154 to align
# Constraint # added constraint: constraint((T0307)S113.CB, (T0307)M124.CB) [> 4.4761 = 7.4602 < 9.6983] w=0.1129 to align
# Constraint # added constraint: constraint((T0307)M24.CB, (T0307)L91.CB) [> 3.1145 = 5.1908 < 6.7480] w=0.1103 to align
# Constraint # added constraint: constraint((T0307)M24.CB, (T0307)V87.CB) [> 3.6442 = 6.0736 < 7.8957] w=0.1103 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)Y90.CB) [> 3.9514 = 6.5857 < 8.5614] w=0.1103 to align
# Constraint # added constraint: constraint((T0307)L59.CB, (T0307)V93.CB) [> 4.1210 = 6.8684 < 8.9289] w=0.1102 to align
# Constraint # added constraint: constraint((T0307)A38.CB, (T0307)V57.CB) [> 3.6049 = 6.0081 < 7.8106] w=0.0847 to align
# Constraint # added constraint: constraint((T0307)T110.CB, (T0307)I127.CB) [> 4.0089 = 6.6815 < 8.6859] w=0.0847 to align
# Constraint # added constraint: constraint((T0307)I112.CB, (T0307)I127.CB) [> 3.7696 = 6.2827 < 8.1675] w=0.0840 to align
# Constraint # added constraint: constraint((T0307)Y86.CB, (T0307)L111.CB) [> 3.6372 = 6.0620 < 7.8806] w=0.0840 to align
# Constraint # added constraint: constraint((T0307)F13.CB, (T0307)I76.CB) [> 4.7943 = 7.9904 < 10.3875] w=0.0831 to align
# Constraint # added constraint: constraint((T0307)L115.CB, (T0307)A126.CB) [> 3.3038 = 5.5064 < 7.1583] w=0.0823 to align
# Constraint # added constraint: constraint((T0307)I101.CB, (T0307)M130.CB) [> 4.6813 = 7.8022 < 10.1429] w=0.0820 to align
# Constraint # added constraint: constraint((T0307)A77.CB, (T0307)V87.CB) [> 3.6327 = 6.0545 < 7.8708] w=0.0817 to align
# Constraint # added constraint: constraint((T0307)I21.CB, (T0307)L61.CB) [> 3.2545 = 5.4242 < 7.0514] w=0.0813 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)L61.CB) [> 3.9645 = 6.6076 < 8.5898] w=0.0813 to align
# Constraint # added constraint: constraint((T0307)G92.CA, (T0307)L108.CB) [> 4.7785 = 7.9642 < 10.3534] w=0.0791 to align
# Constraint # added constraint: constraint((T0307)S7.CB, (T0307)M48.CB) [> 3.6179 = 6.0298 < 7.8387] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)L8.CB, (T0307)V42.CB) [> 4.1284 = 6.8807 < 8.9449] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)L8.CB, (T0307)M43.CB) [> 3.2675 = 5.4458 < 7.0795] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)L8.CB, (T0307)M48.CB) [> 3.6707 = 6.1178 < 7.9531] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)L8.CB, (T0307)L60.CB) [> 4.5409 = 7.5681 < 9.8386] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)N9.CB, (T0307)I35.CB) [> 3.4911 = 5.8184 < 7.5640] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)S7.CB, (T0307)V42.CB) [> 3.3416 = 5.5694 < 7.2402] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)Q6.CB, (T0307)F50.CB) [> 3.6716 = 6.1194 < 7.9552] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)Q6.CB, (T0307)T44.CB) [> 4.4438 = 7.4064 < 9.6283] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)R5.CB, (T0307)F50.CB) [> 4.2123 = 7.0205 < 9.1266] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)R5.CB, (T0307)M48.CB) [> 4.4449 = 7.4082 < 9.6306] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)I10.CB, (T0307)L60.CB) [> 4.3225 = 7.2041 < 9.3654] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)I10.CB, (T0307)M43.CB) [> 4.1258 = 6.8762 < 8.9391] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)I10.CB, (T0307)V42.CB) [> 4.5396 = 7.5660 < 9.8358] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)I10.CB, (T0307)A41.CB) [> 2.7377 = 4.5629 < 5.9317] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)I10.CB, (T0307)I40.CB) [> 4.2057 = 7.0095 < 9.1123] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)F13.CB, (T0307)A74.CB) [> 3.9087 = 6.5145 < 8.4688] w=0.0781 to align
# Constraint # added constraint: constraint((T0307)R45.CB, (T0307)G92.CA) [> 3.7801 = 6.3002 < 8.1902] w=0.0773 to align
# Constraint # added constraint: constraint((T0307)Y90.CB, (T0307)C116.CB) [> 3.5164 = 5.8607 < 7.6189] w=0.0773 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)L115.CB) [> 4.6935 = 7.8224 < 10.1692] w=0.0773 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)C116.CB) [> 4.3667 = 7.2779 < 9.4613] w=0.0773 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)C116.CB) [> 3.5081 = 5.8468 < 7.6009] w=0.0773 to align
# Constraint # added constraint: constraint((T0307)M24.CB, (T0307)I35.CB) [> 4.4889 = 7.4815 < 9.7259] w=0.0755 to align
# Constraint # added constraint: constraint((T0307)A96.CB, (T0307)L108.CB) [> 3.6778 = 6.1296 < 7.9685] w=0.0751 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)I67.CB) [> 4.7716 = 7.9527 < 10.3385] w=0.0748 to align
# Constraint # added constraint: constraint((T0307)E17.CB, (T0307)G92.CA) [> 4.7395 = 7.8992 < 10.2690] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)A88.CB) [> 3.0376 = 5.0627 < 6.5814] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)A20.CB, (T0307)A88.CB) [> 3.9651 = 6.6085 < 8.5910] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)A20.CB, (T0307)L91.CB) [> 3.2564 = 5.4274 < 7.0556] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)M24.CB, (T0307)I94.CB) [> 4.3902 = 7.3170 < 9.5120] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)S27.CB, (T0307)S97.CB) [> 3.7950 = 6.3250 < 8.2226] w=0.0703 to align
# Constraint # added constraint: constraint((T0307)F13.CB, (T0307)L59.CB) [> 4.2414 = 7.0690 < 9.1896] w=0.0654 to align
# Constraint # added constraint: constraint((T0307)W109.CB, (T0307)V123.CB) [> 3.3608 = 5.6013 < 7.2818] w=0.0484 to align
# Constraint # added constraint: constraint((T0307)P37.CB, (T0307)G92.CA) [> 3.9808 = 6.6346 < 8.6250] w=0.0423 to align
# Constraint # added constraint: constraint((T0307)S7.CB, (T0307)A38.CB) [> 4.3239 = 7.2065 < 9.3685] w=0.0423 to align
# Constraint # added constraint: constraint((T0307)L8.CB, (T0307)I35.CB) [> 3.3820 = 5.6367 < 7.3277] w=0.0423 to align
# Constraint # added constraint: constraint((T0307)S14.CB, (T0307)K62.CB) [> 4.5876 = 7.6460 < 9.9398] w=0.0423 to align
# Constraint # added constraint: constraint((T0307)L111.CB, (T0307)M124.CB) [> 3.9189 = 6.5316 < 8.4910] w=0.0420 to align
# Constraint # added constraint: constraint((T0307)A74.CB, (T0307)C116.CB) [> 3.5634 = 5.9389 < 7.7206] w=0.0417 to align
# Constraint # added constraint: constraint((T0307)L91.CB, (T0307)I112.CB) [> 3.3942 = 5.6571 < 7.3542] w=0.0417 to align
# Constraint # added constraint: constraint((T0307)M28.CB, (T0307)A38.CB) [> 4.5960 = 7.6600 < 9.9580] w=0.0415 to align
# Constraint # added constraint: constraint((T0307)A38.CB, (T0307)L53.CB) [> 4.6246 = 7.7077 < 10.0201] w=0.0415 to align
# Constraint # added constraint: constraint((T0307)A20.CB, (T0307)V87.CB) [> 3.8123 = 6.3538 < 8.2600] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)I52.CB, (T0307)S97.CB) [> 4.4149 = 7.3582 < 9.5656] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)L53.CB, (T0307)D98.CB) [> 4.4776 = 7.4626 < 9.7014] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)L115.CB) [> 4.6133 = 7.6888 < 9.9954] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)I94.CB, (T0307)L115.CB) [> 4.6332 = 7.7221 < 10.0387] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)A38.CB, (T0307)L59.CB) [> 3.4698 = 5.7829 < 7.5178] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)E46.CB, (T0307)A96.CB) [> 3.9476 = 6.5794 < 8.5532] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)V57.CB, (T0307)M130.CB) [> 3.8010 = 6.3349 < 8.2354] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)M43.CB, (T0307)V93.CB) [> 4.0262 = 6.7103 < 8.7234] w=0.0400 to align
# Constraint # added constraint: constraint((T0307)M11.CB, (T0307)A74.CB) [> 4.1320 = 6.8867 < 8.9527] w=0.0391 to align
# Constraint # added constraint: constraint((T0307)M11.CB, (T0307)A41.CB) [> 4.6757 = 7.7929 < 10.1308] w=0.0391 to align
# Constraint # added constraint: constraint((T0307)M11.CB, (T0307)I40.CB) [> 4.2579 = 7.0965 < 9.2254] w=0.0391 to align
# Constraint # added constraint: constraint((T0307)S14.CB, (T0307)A41.CB) [> 4.3344 = 7.2241 < 9.3913] w=0.0391 to align
# Constraint # added constraint: constraint((T0307)K62.CB, (T0307)V93.CB) [> 4.3035 = 7.1725 < 9.3242] w=0.0391 to align
# Constraint # added constraint: constraint((T0307)L18.CB, (T0307)A74.CB) [> 2.9094 = 4.8490 < 6.3038] w=0.0379 to align
# Constraint # added constraint: constraint((T0307)W109.CB, (T0307)I127.CB) [> 3.0681 = 5.1136 < 6.6476] w=0.0374 to align
# Constraint # added constraint: constraint((T0307)F50.CB, (T0307)T120.CB) [> 4.5202 = 7.5337 < 9.7938] w=0.0357 to align
# Constraint # added constraint: constraint((T0307)V93.CB, (T0307)S113.CB) [> 3.4607 = 5.7679 < 7.4983] w=0.0351 to align
# Constraint # added constraint: constraint((T0307)I35.CB, (T0307)A74.CB) [> 3.9662 = 6.6102 < 8.5933] w=0.0327 to align
# Constraint # added constraint: constraint((T0307)Y86.CB, (T0307)A126.CB) [> 4.5882 = 7.6470 < 9.9411] w=0.0327 to align
# Constraint # added constraint: constraint((T0307)M30.CB, (T0307)G92.CA) [> 4.3677 = 7.2795 < 9.4634] w=0.0098 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)S70.CB) [> 4.4281 = 7.3801 < 9.5942] w=0.0098 to align
# Constraint # added constraint: constraint((T0307)V29.CB, (T0307)A74.CB) [> 3.6731 = 6.1218 < 7.9584] w=0.0098 to align
# Constraint # added constraint: constraint((T0307)C116.CB, (T0307)E125.CB) [> 3.9659 = 6.6098 < 8.5927] w=0.0098 to align
# Constraint # added constraint: constraint((T0307)M79.CB, (T0307)M130.CB) [> 3.9771 = 6.6285 < 8.6170] w=0.0093 to align
# Constraint # added constraint: constraint((T0307)I52.CB, (T0307)I94.CB) [> 4.1192 = 6.8653 < 8.9249] w=0.0047 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0307/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0307/decoys/
# ReadConformPDB reading from PDB file edit2.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 129
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file edit3.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file edit9.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 85
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 40
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 87
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 82
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 87
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 82
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 86
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.N only 0 apart, marking (T0307)I94.N as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.CA only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.CA only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.CB only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.CB only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.CB only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)I94.CG1 only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.CG1 only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.CG1 only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.CG1 only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)I94.CG2 only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)I94.CG2 only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.CG2 only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.CG2 only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.CG2 only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.CD1 only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.O only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)I94.C only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.N only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.N only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.N only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.N only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.N only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.N only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.N only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.N only 0 apart, marking (T0307)I94.N as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.N only 0 apart, marking (T0307)M95.N as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.CA only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.CB only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.CG only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.SD only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.CE only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.O only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)M95.C only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)A96.N only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)A96.N only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)A96.N only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)A96.N only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)A96.N only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)A96.N only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)A96.N only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)A96.N only 0 apart, marking (T0307)M95.N as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)A96.N only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)A96.N only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)A96.N only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)A96.N only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)A96.N only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)A96.N only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)A96.N only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)A96.N only 0 apart, marking (T0307)I94.N as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)A96.N only 0 apart, marking (T0307)A96.N as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)A96.CA only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)A96.CB only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)A96.O only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)A96.C only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.N only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.N only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.N only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.N only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.N only 0 apart, marking (T0307)A96.N as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.N only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.N only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.N only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.N only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.N only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.N only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.N only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.N only 0 apart, marking (T0307)M95.N as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.N only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.N only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.N only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.N only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.N only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.N only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.N only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.N only 0 apart, marking (T0307)I94.N as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.N only 0 apart, marking (T0307)S97.N as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.CA only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.CB only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.OG only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.O only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)S97.C only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.N only 0 apart, marking (T0307)S97.C as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.N only 0 apart, marking (T0307)S97.O as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.N only 0 apart, marking (T0307)S97.OG as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.N only 0 apart, marking (T0307)S97.CB as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.N only 0 apart, marking (T0307)S97.CA as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.N only 0 apart, marking (T0307)S97.N as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.N only 0 apart, marking (T0307)A96.C as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.N only 0 apart, marking (T0307)A96.O as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.N only 0 apart, marking (T0307)A96.CB as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.N only 0 apart, marking (T0307)A96.CA as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.N only 0 apart, marking (T0307)A96.N as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.N only 0 apart, marking (T0307)M95.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.N only 0 apart, marking (T0307)M95.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.N only 0 apart, marking (T0307)M95.CE as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.N only 0 apart, marking (T0307)M95.SD as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.N only 0 apart, marking (T0307)M95.CG as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.N only 0 apart, marking (T0307)M95.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.N only 0 apart, marking (T0307)M95.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.N only 0 apart, marking (T0307)M95.N as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.N only 0 apart, marking (T0307)I94.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.N only 0 apart, marking (T0307)I94.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.N only 0 apart, marking (T0307)I94.CD1 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.N only 0 apart, marking (T0307)I94.CG2 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.N only 0 apart, marking (T0307)I94.CG1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.N only 0 apart, marking (T0307)I94.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.N only 0 apart, marking (T0307)I94.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.N only 0 apart, marking (T0307)I94.N as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.N only 0 apart, marking (T0307)D98.N as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.CA only 0 apart, marking (T0307)D98.CA as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.CB only 0 apart, marking (T0307)D98.CB as missing
WARNING: atoms too close: (T0307)D98.CB and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.CG only 0 apart, marking (T0307)D98.CG as missing
WARNING: atoms too close: (T0307)D98.CG and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)D98.CB and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.OD1 only 0 apart, marking (T0307)D98.OD1 as missing
WARNING: atoms too close: (T0307)D98.OD1 and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)D98.CG and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)D98.CB and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.OD2 only 0 apart, marking (T0307)D98.OD2 as missing
WARNING: atoms too close: (T0307)D98.OD2 and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.OD1 and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.CG and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.CB and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.O only 0 apart, marking (T0307)D98.O as missing
WARNING: atoms too close: (T0307)D98.O and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.OD2 and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.OD1 and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.CG and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.CB and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.CA and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)D98.N and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.C and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.O and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.OG and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.CB and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.CA and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)S97.N and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)A96.C and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)A96.O and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)A96.CB and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)A96.CA and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)A96.N and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.C and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.O and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.CE and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.SD and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.CG and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.CB and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.CA and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)M95.N and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.C and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.O and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.CD1 and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.CG2 and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.CG1 and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.CB and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.CA and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)I94.N and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
WARNING: atoms too close: (T0307)V93.C and (T0307)D98.C only 0 apart, marking (T0307)D98.C as missing
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# Found a chain break before 124
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 65
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 77
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 38
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
Skipped atom 258, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 83
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 46
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 56
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# Found a chain break before 117
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
Skipped atom 175, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz
Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz
Skipped atom 273, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 124
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 124
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 120
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 123
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# Found a chain break before 73
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 116
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 117
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 108
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 90
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS2
# ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS3
# ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1
# Found a chain break before 126
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS4
# ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1
# Found a chain break before 60
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# Found a chain break before 12
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# Found a chain break before 12
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 16
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 107
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 115
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 115
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 61
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 36
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 36
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 115
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 51
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 108
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 12
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 12
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 12
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
Skipped atom 13, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 39, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 41, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
Skipped atom 127, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 96
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 16
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 84
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 49
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 86
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 84
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 29
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 52
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 92
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 66
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 108
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation gtg_AL1
# ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation gtg_AL2
# ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation gtg_AL3
# ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation gtg_AL4
# ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation gtg_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 77
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 45
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
WARNING: atoms too close: (T0307)S7.O and (T0307)L8.N only 0.000 apart, marking (T0307)L8.N as missing
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
# Found a chain break before 126
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# Found a chain break before 108
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 103
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0307 can't currently be optimized by undertaker
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 252
model score 2.0121
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weight: 0.5801 eval: 1.1813 min: 0.0997 max: 2.4182
weight: 0.3659 eval: 1.7333 min: 0.0997 max: 2.4182
weight: 0.4330 eval: 1.5604 min: 0.0997 max: 2.4182
weight: 0.4641 eval: 1.4801 min: 0.0997 max: 2.4182
weight: 0.4234 eval: 1.5851 min: 0.0997 max: 2.4182
weight: 0.4630 eval: 1.4829 min: 0.0997 max: 2.4182
weight: 0.4335 eval: 1.5592 min: 0.0997 max: 2.4182
weight: 0.4139 eval: 1.6095 min: 0.0997 max: 2.4182
weight: 0.1915 eval: 2.1826 min: 0.0997 max: 2.4182
weight: 0.8308 eval: 0.5356 min: 0.0997 max: 2.4182
weight: 0.2073 eval: 2.1419 min: 0.0997 max: 2.4182
weight: 0.4484 eval: 1.5207 min: 0.0997 max: 2.4182
weight: 0.2897 eval: 1.9294 min: 0.0997 max: 2.4182
weight: 0.3477 eval: 1.7802 min: 0.0997 max: 2.4182
weight: 0.2807 eval: 1.9527 min: 0.0997 max: 2.4182
weight: 0.4617 eval: 1.4864 min: 0.0997 max: 2.4182
weight: 0.4823 eval: 1.4334 min: 0.0997 max: 2.4182
weight: 0.5969 eval: 1.1382 min: 0.0997 max: 2.4182
weight: 0.7007 eval: 0.8707 min: 0.0997 max: 2.4182
Adding 6182 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -248.2764, CN propb: -248.2764 weights: 0.2687 constraints: 228
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 228
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 228
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 5954
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 5954
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 6182
# command: