# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0306/ # command:# Making conformation for sequence T0306 numbered 1 through 95 Created new target T0306 from T0306.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0306/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0306//projects/compbio/experiments/protein-predict/casp7/T0306/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0306//projects/compbio/experiments/protein-predict/casp7/T0306/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0306/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0306/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)L76.CB) [> 4.0972 = 6.8288 < 8.8774] w=1.0000 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)V42.CB) [> 3.9714 = 6.6190 < 8.6047] w=0.9829 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)I44.CB) [> 3.8433 = 6.4055 < 8.3272] w=0.9802 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)V42.CB) [> 3.5027 = 5.8378 < 7.5891] w=0.8846 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)A41.CB) [> 3.8763 = 6.4605 < 8.3987] w=0.8785 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)V42.CB) [> 4.2420 = 7.0701 < 9.1911] w=0.8605 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)V78.CB) [> 3.8851 = 6.4752 < 8.4177] w=0.8118 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)C77.CB) [> 3.1885 = 5.3141 < 6.9084] w=0.7876 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)L76.CB) [> 4.5312 = 7.5520 < 9.8176] w=0.7876 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)C40.CB) [> 3.9203 = 6.5339 < 8.4940] w=0.7862 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)C77.CB) [> 4.0754 = 6.7923 < 8.8300] w=0.7608 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)I79.CB) [> 3.9684 = 6.6140 < 8.5982] w=0.7582 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)V42.CB) [> 3.7006 = 6.1677 < 8.0181] w=0.7518 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)A43.CB) [> 4.0353 = 6.7255 < 8.7432] w=0.7441 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)A41.CB) [> 3.2944 = 5.4907 < 7.1379] w=0.7281 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)C77.CB) [> 4.2466 = 7.0777 < 9.2010] w=0.7238 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)L76.CB) [> 3.1650 = 5.2749 < 6.8574] w=0.7238 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)V42.CB) [> 4.3783 = 7.2972 < 9.4864] w=0.7169 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)C40.CB) [> 3.6805 = 6.1342 < 7.9744] w=0.7157 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)L76.CB) [> 3.9337 = 6.5562 < 8.5231] w=0.7071 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)V74.CB) [> 4.3667 = 7.2778 < 9.4611] w=0.7027 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)I79.CB) [> 4.0455 = 6.7424 < 8.7651] w=0.6978 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)H67.CB) [> 3.8897 = 6.4829 < 8.4278] w=0.6967 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)I44.CB) [> 3.4474 = 5.7457 < 7.4694] w=0.6815 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)L56.CB) [> 3.1335 = 5.2224 < 6.7892] w=0.6739 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)L57.CB) [> 3.5974 = 5.9957 < 7.7944] w=0.6663 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)A41.CB) [> 3.5268 = 5.8781 < 7.6415] w=0.6507 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)A41.CB) [> 4.5112 = 7.5187 < 9.7743] w=0.6374 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)V74.CB) [> 3.3296 = 5.5494 < 7.2142] w=0.6325 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)L56.CB) [> 4.0780 = 6.7967 < 8.8357] w=0.6198 to align # Constraint # added constraint: constraint((T0306)I30.CB, (T0306)C40.CB) [> 3.7302 = 6.2170 < 8.0821] w=0.6161 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)I79.CB) [> 3.7673 = 6.2789 < 8.1626] w=0.6159 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)V58.CB) [> 4.1626 = 6.9377 < 9.0190] w=0.6022 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)K23.CB) [> 3.6961 = 6.1602 < 8.0082] w=0.5943 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)L25.CB) [> 3.5749 = 5.9581 < 7.7455] w=0.5943 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)I44.CB) [> 4.0388 = 6.7313 < 8.7507] w=0.5908 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)C77.CB) [> 3.6186 = 6.0309 < 7.8402] w=0.5789 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)A43.CB) [> 3.9006 = 6.5010 < 8.4514] w=0.5780 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)C77.CB) [> 3.5063 = 5.8438 < 7.5970] w=0.5746 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)V55.CB) [> 4.4097 = 7.3495 < 9.5543] w=0.5735 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)I79.CB) [> 2.7725 = 4.6208 < 6.0070] w=0.5725 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)V78.CB) [> 4.2455 = 7.0758 < 9.1985] w=0.5725 to align # Constraint # added constraint: constraint((T0306)E53.CB, (T0306)V74.CB) [> 4.5160 = 7.5266 < 9.7846] w=0.5725 to align # Constraint # added constraint: constraint((T0306)E53.CB, (T0306)P73.CB) [> 2.8775 = 4.7958 < 6.2345] w=0.5725 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)A41.CB) [> 4.1466 = 6.9110 < 8.9844] w=0.5661 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)C40.CB) [> 3.6556 = 6.0927 < 7.9205] w=0.5638 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)Q39.CB) [> 3.6282 = 6.0470 < 7.8611] w=0.5581 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)V55.CB) [> 3.3196 = 5.5326 < 7.1924] w=0.5481 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)D75.CB) [> 2.5954 = 4.3256 < 5.6233] w=0.5448 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)P73.CB) [> 4.0417 = 6.7362 < 8.7571] w=0.5448 to align # Constraint # added constraint: constraint((T0306)G52.CA, (T0306)P73.CB) [> 2.5155 = 4.1924 < 5.4502] w=0.5448 to align # Constraint # added constraint: constraint((T0306)T51.CB, (T0306)P73.CB) [> 3.5166 = 5.8610 < 7.6193] w=0.5448 to align # Constraint # added constraint: constraint((T0306)D22.CB, (T0306)I44.CB) [> 4.3088 = 7.1813 < 9.3357] w=0.5377 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)V78.CB) [> 3.9333 = 6.5555 < 8.5222] w=0.5314 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)A43.CB) [> 3.3700 = 5.6167 < 7.3018] w=0.5266 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)V55.CB) [> 4.5880 = 7.6467 < 9.9407] w=0.5250 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)V58.CB) [> 3.9253 = 6.5422 < 8.5049] w=0.5190 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)L56.CB) [> 4.4836 = 7.4726 < 9.7144] w=0.5190 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)V42.CB) [> 4.0429 = 6.7381 < 8.7595] w=0.5190 to align # Constraint # added constraint: constraint((T0306)D22.CB, (T0306)A43.CB) [> 3.8704 = 6.4507 < 8.3859] w=0.5190 to align # Constraint # added constraint: constraint((T0306)L19.CB, (T0306)A43.CB) [> 2.9859 = 4.9765 < 6.4694] w=0.5190 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)N46.CB) [> 3.6150 = 6.0250 < 7.8325] w=0.5190 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)D45.CB) [> 2.7494 = 4.5824 < 5.9571] w=0.5190 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)Q39.CB) [> 3.9969 = 6.6615 < 8.6600] w=0.5149 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)I44.CB) [> 3.9019 = 6.5031 < 8.4541] w=0.5137 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)R64.CB) [> 4.4646 = 7.4411 < 9.6734] w=0.5092 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)L56.CB) [> 3.3581 = 5.5969 < 7.2759] w=0.4977 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)V78.CB) [> 4.6873 = 7.8123 < 10.1559] w=0.4920 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)P73.CB) [> 2.9844 = 4.9739 < 6.4661] w=0.4920 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)A43.CB) [> 3.0410 = 5.0684 < 6.5889] w=0.4916 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)D75.CB) [> 4.2700 = 7.1167 < 9.2517] w=0.4911 to align # Constraint # added constraint: constraint((T0306)G52.CA, (T0306)V74.CB) [> 3.5649 = 5.9414 < 7.7239] w=0.4911 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)A41.CB) [> 3.6504 = 6.0840 < 7.9091] w=0.4910 to align # Constraint # added constraint: constraint((T0306)I30.CB, (T0306)V74.CB) [> 3.5429 = 5.9048 < 7.6762] w=0.4879 to align # Constraint # added constraint: constraint((T0306)I30.CB, (T0306)P73.CB) [> 3.7632 = 6.2720 < 8.1536] w=0.4879 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)I79.CB) [> 3.5999 = 5.9998 < 7.7997] w=0.4879 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)V78.CB) [> 4.5280 = 7.5466 < 9.8106] w=0.4879 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)Q39.CB) [> 3.5948 = 5.9914 < 7.7888] w=0.4838 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)C40.CB) [> 3.9063 = 6.5106 < 8.4638] w=0.4834 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)C40.CB) [> 4.1851 = 6.9752 < 9.0678] w=0.4815 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)V78.CB) [> 4.1770 = 6.9617 < 9.0502] w=0.4704 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)C77.CB) [> 3.3592 = 5.5987 < 7.2783] w=0.4643 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)C77.CB) [> 4.2992 = 7.1653 < 9.3149] w=0.4643 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)V78.CB) [> 2.7685 = 4.6142 < 5.9984] w=0.4643 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)D75.CB) [> 3.7643 = 6.2738 < 8.1559] w=0.4643 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)L76.CB) [> 4.2470 = 7.0783 < 9.2018] w=0.4643 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)V78.CB) [> 4.6021 = 7.6702 < 9.9713] w=0.4643 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)D75.CB) [> 4.1525 = 6.9208 < 8.9970] w=0.4643 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)L76.CB) [> 3.0527 = 5.0879 < 6.6142] w=0.4643 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)V78.CB) [> 4.1271 = 6.8786 < 8.9421] w=0.4643 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)V74.CB) [> 3.9886 = 6.6477 < 8.6420] w=0.4643 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)D75.CB) [> 2.8839 = 4.8066 < 6.2485] w=0.4643 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)L76.CB) [> 3.9114 = 6.5190 < 8.4747] w=0.4643 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)S72.CB) [> 4.4378 = 7.3964 < 9.6153] w=0.4643 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)V74.CB) [> 3.5747 = 5.9578 < 7.7452] w=0.4643 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)D75.CB) [> 3.5124 = 5.8539 < 7.6101] w=0.4643 to align # Constraint # added constraint: constraint((T0306)G50.CA, (T0306)D75.CB) [> 4.1173 = 6.8621 < 8.9207] w=0.4643 to align # Constraint # added constraint: constraint((T0306)G52.CA, (T0306)D75.CB) [> 2.8985 = 4.8308 < 6.2801] w=0.4643 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)V74.CB) [> 4.6889 = 7.8148 < 10.1592] w=0.4643 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)D75.CB) [> 4.3003 = 7.1672 < 9.3173] w=0.4643 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)C77.CB) [> 2.9416 = 4.9027 < 6.3735] w=0.4587 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)C77.CB) [> 3.9986 = 6.6644 < 8.6636] w=0.4587 to align # Constraint # added constraint: constraint((T0306)I30.CB, (T0306)Q39.CB) [> 4.0279 = 6.7131 < 8.7270] w=0.4545 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)V42.CB) [> 4.4409 = 7.4016 < 9.6221] w=0.4506 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)A43.CB) [> 3.2749 = 5.4581 < 7.0955] w=0.4506 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)I44.CB) [> 4.1623 = 6.9371 < 9.0182] w=0.4506 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)A43.CB) [> 4.4470 = 7.4117 < 9.6352] w=0.4506 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)L24.CB) [> 4.1341 = 6.8902 < 8.9572] w=0.4504 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)L56.CB) [> 3.2842 = 5.4736 < 7.1157] w=0.4427 to align # Constraint # added constraint: constraint((T0306)G18.CA, (T0306)E53.CB) [> 4.5667 = 7.6112 < 9.8945] w=0.4392 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)L56.CB) [> 4.6436 = 7.7393 < 10.0611] w=0.4392 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)V55.CB) [> 3.4320 = 5.7199 < 7.4359] w=0.4392 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)V55.CB) [> 4.3266 = 7.2110 < 9.3743] w=0.4392 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)V58.CB) [> 4.0337 = 6.7228 < 8.7396] w=0.4392 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)L57.CB) [> 3.1160 = 5.1934 < 6.7514] w=0.4392 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)L57.CB) [> 4.0174 = 6.6957 < 8.7044] w=0.4357 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)V55.CB) [> 3.7906 = 6.3176 < 8.2129] w=0.4357 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)W54.CB) [> 4.4444 = 7.4074 < 9.6296] w=0.4350 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)G80.CA) [> 4.0770 = 6.7950 < 8.8335] w=0.4329 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)I44.CB) [> 4.0445 = 6.7409 < 8.7632] w=0.4313 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)Q65.CB) [> 4.7248 = 7.8747 < 10.2371] w=0.4168 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)L57.CB) [> 4.1038 = 6.8397 < 8.8916] w=0.3967 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)W54.CB) [> 3.9015 = 6.5025 < 8.4532] w=0.3888 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)L56.CB) [> 3.7657 = 6.2762 < 8.1590] w=0.3840 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)L57.CB) [> 4.3053 = 7.1756 < 9.3282] w=0.3707 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)G80.CA) [> 3.9032 = 6.5053 < 8.4569] w=0.3700 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)R64.CB) [> 3.2330 = 5.3883 < 7.0047] w=0.3693 to align # Constraint # added constraint: constraint((T0306)H21.CB, (T0306)A43.CB) [> 3.2750 = 5.4583 < 7.0958] w=0.3675 to align # Constraint # added constraint: constraint((T0306)H16.CB, (T0306)N46.CB) [> 3.7795 = 6.2991 < 8.1888] w=0.3675 to align # Constraint # added constraint: constraint((T0306)R15.CB, (T0306)G52.CA) [> 2.6608 = 4.4346 < 5.7650] w=0.3675 to align # Constraint # added constraint: constraint((T0306)R15.CB, (T0306)G50.CA) [> 3.4441 = 5.7401 < 7.4621] w=0.3675 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)G50.CA) [> 4.4523 = 7.4206 < 9.6467] w=0.3675 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)N46.CB) [> 4.2834 = 7.1390 < 9.2808] w=0.3675 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)D45.CB) [> 4.5371 = 7.5618 < 9.8303] w=0.3675 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)A43.CB) [> 2.4530 = 4.0883 < 5.3148] w=0.3675 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)V58.CB) [> 4.2584 = 7.0974 < 9.2266] w=0.3675 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)G50.CA) [> 3.9158 = 6.5262 < 8.4841] w=0.3675 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)I47.CB) [> 2.7767 = 4.6279 < 6.0162] w=0.3675 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)D45.CB) [> 4.1716 = 6.9526 < 9.0384] w=0.3675 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)A41.CB) [> 3.1057 = 5.1761 < 6.7290] w=0.3675 to align # Constraint # added constraint: constraint((T0306)P36.CB, (T0306)S72.CB) [> 3.3177 = 5.5296 < 7.1885] w=0.3675 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)L57.CB) [> 3.9697 = 6.6162 < 8.6011] w=0.3675 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)L76.CB) [> 4.1538 = 6.9231 < 9.0000] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)I79.CB) [> 4.1404 = 6.9007 < 8.9709] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)V78.CB) [> 3.6801 = 6.1335 < 7.9736] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)L76.CB) [> 3.3143 = 5.5239 < 7.1810] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)I79.CB) [> 2.4804 = 4.1340 < 5.3741] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)V78.CB) [> 4.2881 = 7.1468 < 9.2909] w=0.3675 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)V78.CB) [> 3.6831 = 6.1385 < 7.9800] w=0.3675 to align # Constraint # added constraint: constraint((T0306)D22.CB, (T0306)V42.CB) [> 3.7563 = 6.2605 < 8.1386] w=0.3675 to align # Constraint # added constraint: constraint((T0306)H21.CB, (T0306)I44.CB) [> 3.8705 = 6.4509 < 8.3862] w=0.3675 to align # Constraint # added constraint: constraint((T0306)L19.CB, (T0306)E53.CB) [> 4.4582 = 7.4303 < 9.6594] w=0.3653 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)G80.CA) [> 3.6286 = 6.0476 < 7.8619] w=0.3632 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)A43.CB) [> 4.0741 = 6.7902 < 8.8273] w=0.3589 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)L24.CB) [> 3.8328 = 6.3881 < 8.3045] w=0.3576 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)I79.CB) [> 3.4784 = 5.7973 < 7.5365] w=0.3574 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)V78.CB) [> 3.9809 = 6.6349 < 8.6253] w=0.3510 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)Q39.CB) [> 3.4142 = 5.6903 < 7.3974] w=0.3426 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)L57.CB) [> 3.3926 = 5.6543 < 7.3505] w=0.3402 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)L57.CB) [> 4.0814 = 6.8024 < 8.8431] w=0.3402 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)L56.CB) [> 4.5602 = 7.6003 < 9.8804] w=0.3390 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)W54.CB) [> 3.3985 = 5.6641 < 7.3633] w=0.3322 to align # Constraint # added constraint: constraint((T0306)L19.CB, (T0306)I44.CB) [> 3.6576 = 6.0960 < 7.9248] w=0.3322 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)W54.CB) [> 4.0527 = 6.7545 < 8.7808] w=0.3322 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)M26.CB) [> 4.6769 = 7.7949 < 10.1334] w=0.3322 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)I79.CB) [> 3.5306 = 5.8843 < 7.6496] w=0.3305 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)V78.CB) [> 4.2925 = 7.1542 < 9.3004] w=0.3305 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)C40.CB) [> 4.0005 = 6.6676 < 8.6679] w=0.3299 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)C77.CB) [> 4.1381 = 6.8968 < 8.9658] w=0.3242 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)L57.CB) [> 4.3432 = 7.2387 < 9.4104] w=0.3239 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)I44.CB) [> 4.2723 = 7.1206 < 9.2568] w=0.3213 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)G80.CA) [> 3.5452 = 5.9086 < 7.6812] w=0.3207 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)G80.CA) [> 4.4212 = 7.3687 < 9.5794] w=0.3199 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)L56.CB) [> 3.3424 = 5.5707 < 7.2419] w=0.3100 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)D45.CB) [> 3.2964 = 5.4940 < 7.1421] w=0.3098 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)N46.CB) [> 4.1478 = 6.9130 < 8.9869] w=0.3081 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)L76.CB) [> 3.9017 = 6.5029 < 8.4537] w=0.3051 to align # Constraint # added constraint: constraint((T0306)Q39.CB, (T0306)V58.CB) [> 3.9102 = 6.5170 < 8.4721] w=0.2988 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)L56.CB) [> 4.1675 = 6.9459 < 9.0296] w=0.2988 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)L57.CB) [> 4.4708 = 7.4513 < 9.6867] w=0.2988 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)V58.CB) [> 3.7730 = 6.2884 < 8.1749] w=0.2988 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)L56.CB) [> 4.4883 = 7.4805 < 9.7247] w=0.2988 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)V55.CB) [> 3.0951 = 5.1584 < 6.7060] w=0.2988 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)W54.CB) [> 3.5655 = 5.9425 < 7.7252] w=0.2988 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)V42.CB) [> 4.0329 = 6.7214 < 8.7379] w=0.2967 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)G48.CA) [> 3.9922 = 6.6536 < 8.6497] w=0.2926 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)T51.CB) [> 4.4753 = 7.4588 < 9.6964] w=0.2876 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)T51.CB) [> 2.7981 = 4.6635 < 6.0626] w=0.2876 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)A63.CB) [> 3.5378 = 5.8963 < 7.6652] w=0.2865 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)I79.CB) [> 4.5141 = 7.5234 < 9.7805] w=0.2776 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)V58.CB) [> 3.1421 = 5.2368 < 6.8078] w=0.2774 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)I44.CB) [> 2.6679 = 4.4465 < 5.7804] w=0.2774 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)C77.CB) [> 4.0458 = 6.7430 < 8.7660] w=0.2760 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)A43.CB) [> 3.8096 = 6.3494 < 8.2542] w=0.2733 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)V82.CB) [> 3.8651 = 6.4418 < 8.3744] w=0.2724 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)I81.CB) [> 4.4282 = 7.3803 < 9.5943] w=0.2720 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)L76.CB) [> 4.6535 = 7.7558 < 10.0825] w=0.2705 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)K23.CB) [> 3.8112 = 6.3520 < 8.2576] w=0.2698 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)L25.CB) [> 3.7177 = 6.1962 < 8.0551] w=0.2698 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)L24.CB) [> 3.7983 = 6.3305 < 8.2296] w=0.2698 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)W54.CB) [> 4.5550 = 7.5917 < 9.8692] w=0.2683 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)D45.CB) [> 3.5563 = 5.9271 < 7.7052] w=0.2672 to align # Constraint # added constraint: constraint((T0306)A63.CB, (T0306)L76.CB) [> 3.7431 = 6.2385 < 8.1100] w=0.2580 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)V55.CB) [> 4.3210 = 7.2017 < 9.3622] w=0.2558 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)L57.CB) [> 4.6743 = 7.7906 < 10.1277] w=0.2544 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)S59.CB) [> 3.5319 = 5.8865 < 7.6524] w=0.2525 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)V58.CB) [> 3.7304 = 6.2173 < 8.0825] w=0.2525 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)S59.CB) [> 3.6752 = 6.1253 < 7.9629] w=0.2525 to align # Constraint # added constraint: constraint((T0306)L19.CB, (T0306)G52.CA) [> 2.5226 = 4.2043 < 5.4656] w=0.2523 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)W54.CB) [> 4.4337 = 7.3895 < 9.6063] w=0.2523 to align # Constraint # added constraint: constraint((T0306)E53.CB, (T0306)G80.CA) [> 3.7245 = 6.2074 < 8.0697] w=0.2428 to align # Constraint # added constraint: constraint((T0306)E53.CB, (T0306)I81.CB) [> 3.8756 = 6.4593 < 8.3971] w=0.2428 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)I79.CB) [> 4.5178 = 7.5296 < 9.7885] w=0.2428 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)D75.CB) [> 3.5826 = 5.9711 < 7.7624] w=0.2428 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)I30.CB) [> 3.1722 = 5.2869 < 6.8730] w=0.2423 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)S59.CB) [> 4.2954 = 7.1589 < 9.3066] w=0.2386 to align # Constraint # added constraint: constraint((T0306)Q39.CB, (T0306)G60.CA) [> 3.7010 = 6.1683 < 8.0188] w=0.2386 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)P36.CB) [> 2.7743 = 4.6239 < 6.0111] w=0.2365 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)G38.CA) [> 4.1948 = 6.9914 < 9.0888] w=0.2365 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)H67.CB) [> 3.3812 = 5.6354 < 7.3260] w=0.2349 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)H67.CB) [> 3.7199 = 6.1999 < 8.0598] w=0.2349 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)V85.CB) [> 4.1634 = 6.9390 < 9.0207] w=0.2295 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)I81.CB) [> 4.1835 = 6.9724 < 9.0641] w=0.2295 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)G80.CA) [> 3.5168 = 5.8614 < 7.6198] w=0.2295 to align # Constraint # added constraint: constraint((T0306)L56.CB, (T0306)I81.CB) [> 3.9752 = 6.6253 < 8.6130] w=0.2295 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)I47.CB) [> 3.8237 = 6.3728 < 8.2846] w=0.2173 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)L57.CB) [> 4.4286 = 7.3810 < 9.5953] w=0.2158 to align # Constraint # added constraint: constraint((T0306)S61.CB, (T0306)V78.CB) [> 4.7055 = 7.8425 < 10.1952] w=0.2145 to align # Constraint # added constraint: constraint((T0306)S61.CB, (T0306)L76.CB) [> 3.6511 = 6.0852 < 7.9108] w=0.2145 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)S61.CB) [> 3.0521 = 5.0868 < 6.6128] w=0.2145 to align # Constraint # added constraint: constraint((T0306)D22.CB, (T0306)A49.CB) [> 3.1468 = 5.2447 < 6.8181] w=0.2121 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)V78.CB) [> 4.4742 = 7.4570 < 9.6941] w=0.2116 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)I79.CB) [> 2.5583 = 4.2638 < 5.5429] w=0.2116 to align # Constraint # added constraint: constraint((T0306)G48.CA, (T0306)A63.CB) [> 3.5620 = 5.9366 < 7.7176] w=0.2113 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)A63.CB) [> 3.1157 = 5.1928 < 6.7506] w=0.2113 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)W54.CB) [> 4.4486 = 7.4144 < 9.6386] w=0.2108 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)A43.CB) [> 4.4779 = 7.4632 < 9.7021] w=0.2057 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)V42.CB) [> 3.6282 = 6.0470 < 7.8611] w=0.2057 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)I47.CB) [> 3.9125 = 6.5209 < 8.4772] w=0.2056 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)W54.CB) [> 3.6167 = 6.0278 < 7.8362] w=0.2034 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)L56.CB) [> 3.6271 = 6.0451 < 7.8587] w=0.2034 to align # Constraint # added constraint: constraint((T0306)A49.CB, (T0306)V58.CB) [> 3.9123 = 6.5205 < 8.4766] w=0.1874 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)L76.CB) [> 2.8948 = 4.8246 < 6.2720] w=0.1848 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)D75.CB) [> 4.1552 = 6.9253 < 9.0029] w=0.1848 to align # Constraint # added constraint: constraint((T0306)R15.CB, (T0306)E53.CB) [> 4.6767 = 7.7945 < 10.1329] w=0.1848 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)V58.CB) [> 4.5425 = 7.5708 < 9.8420] w=0.1825 to align # Constraint # added constraint: constraint((T0306)G8.CA, (T0306)L57.CB) [> 3.8230 = 6.3716 < 8.2831] w=0.1806 to align # Constraint # added constraint: constraint((T0306)G8.CA, (T0306)V58.CB) [> 2.9702 = 4.9503 < 6.4354] w=0.1806 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)L56.CB) [> 4.0472 = 6.7453 < 8.7689] w=0.1806 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)L57.CB) [> 2.6085 = 4.3474 < 5.6517] w=0.1806 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)V55.CB) [> 4.0853 = 6.8088 < 8.8514] w=0.1806 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)L56.CB) [> 2.6653 = 4.4422 < 5.7748] w=0.1806 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)L57.CB) [> 4.5509 = 7.5849 < 9.8603] w=0.1806 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)V55.CB) [> 3.2697 = 5.4495 < 7.0843] w=0.1806 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)W54.CB) [> 2.6972 = 4.4953 < 5.8439] w=0.1806 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)T51.CB) [> 4.2479 = 7.0799 < 9.2038] w=0.1806 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)G52.CA) [> 3.8233 = 6.3721 < 8.2838] w=0.1806 to align # Constraint # added constraint: constraint((T0306)A20.CB, (T0306)A49.CB) [> 3.5082 = 5.8471 < 7.6012] w=0.1806 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)V55.CB) [> 3.6002 = 6.0003 < 7.8003] w=0.1806 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)I81.CB) [> 4.6933 = 7.8221 < 10.1688] w=0.1793 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)C77.CB) [> 3.2518 = 5.4196 < 7.0455] w=0.1793 to align # Constraint # added constraint: constraint((T0306)H16.CB, (T0306)L25.CB) [> 4.2489 = 7.0815 < 9.2059] w=0.1785 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)L57.CB) [> 3.1128 = 5.1881 < 6.7445] w=0.1703 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)L56.CB) [> 4.1881 = 6.9802 < 9.0742] w=0.1703 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)G50.CA) [> 3.0611 = 5.1018 < 6.6323] w=0.1638 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)S62.CB) [> 4.0350 = 6.7251 < 8.7426] w=0.1638 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)L57.CB) [> 3.8875 = 6.4791 < 8.4229] w=0.1638 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)V58.CB) [> 3.9930 = 6.6550 < 8.6515] w=0.1638 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)S62.CB) [> 4.0810 = 6.8017 < 8.8422] w=0.1638 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)A66.CB) [> 2.3095 = 3.8492 < 5.0040] w=0.1638 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)D45.CB) [> 3.9511 = 6.5851 < 8.5607] w=0.1628 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)I44.CB) [> 4.2317 = 7.0528 < 9.1687] w=0.1549 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)V42.CB) [> 2.8442 = 4.7404 < 6.1625] w=0.1549 to align # Constraint # added constraint: constraint((T0306)H16.CB, (T0306)C40.CB) [> 4.0306 = 6.7177 < 8.7331] w=0.1549 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)L56.CB) [> 4.4434 = 7.4056 < 9.6273] w=0.1516 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)A41.CB) [> 3.3373 = 5.5622 < 7.2308] w=0.1516 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)V27.CB) [> 4.3443 = 7.2405 < 9.4127] w=0.1516 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)A49.CB) [> 4.6164 = 7.6940 < 10.0023] w=0.1516 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)V27.CB) [> 4.7258 = 7.8763 < 10.2392] w=0.1516 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)M26.CB) [> 3.4223 = 5.7039 < 7.4150] w=0.1516 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)V85.CB) [> 4.6077 = 7.6796 < 9.9834] w=0.1516 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)V27.CB) [> 4.1676 = 6.9460 < 9.0298] w=0.1516 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)M26.CB) [> 3.6202 = 6.0337 < 7.8438] w=0.1516 to align # Constraint # added constraint: constraint((T0306)S61.CB, (T0306)D75.CB) [> 4.0195 = 6.6992 < 8.7090] w=0.1516 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)I81.CB) [> 2.4888 = 4.1480 < 5.3924] w=0.1516 to align # Constraint # added constraint: constraint((T0306)D45.CB, (T0306)L57.CB) [> 2.7971 = 4.6618 < 6.0604] w=0.1516 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)S62.CB) [> 3.2105 = 5.3508 < 6.9560] w=0.1516 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)G60.CA) [> 3.5688 = 5.9480 < 7.7324] w=0.1516 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)V58.CB) [> 3.5485 = 5.9142 < 7.6885] w=0.1516 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)D37.CB) [> 2.9662 = 4.9437 < 6.4268] w=0.1516 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)V85.CB) [> 4.1583 = 6.9305 < 9.0097] w=0.1516 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)V82.CB) [> 4.7192 = 7.8653 < 10.2249] w=0.1481 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)L76.CB) [> 3.4178 = 5.6964 < 7.4053] w=0.1414 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)V82.CB) [> 3.8742 = 6.4569 < 8.3940] w=0.1414 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)V58.CB) [> 4.4165 = 7.3608 < 9.5690] w=0.1370 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)G60.CA) [> 3.8729 = 6.4548 < 8.3913] w=0.1368 to align # Constraint # added constraint: constraint((T0306)A63.CB, (T0306)V74.CB) [> 3.5453 = 5.9088 < 7.6814] w=0.1352 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)G52.CA) [> 4.5921 = 7.6535 < 9.9496] w=0.1344 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)E84.CB) [> 3.8795 = 6.4659 < 8.4057] w=0.1288 to align # Constraint # added constraint: constraint((T0306)E53.CB, (T0306)V82.CB) [> 3.3514 = 5.5856 < 7.2613] w=0.1288 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)E84.CB) [> 4.4880 = 7.4801 < 9.7241] w=0.1288 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)A41.CB) [> 3.5036 = 5.8393 < 7.5910] w=0.1225 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)D45.CB) [> 3.9691 = 6.6152 < 8.5998] w=0.1225 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)G80.CA) [> 3.7351 = 6.2251 < 8.0927] w=0.1204 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)V82.CB) [> 3.3435 = 5.5725 < 7.2443] w=0.1204 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)G80.CA) [> 4.0458 = 6.7430 < 8.7659] w=0.1204 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)V85.CB) [> 3.5405 = 5.9009 < 7.6712] w=0.1204 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)V82.CB) [> 4.1149 = 6.8582 < 8.9157] w=0.1204 to align # Constraint # added constraint: constraint((T0306)V14.CB, (T0306)V82.CB) [> 4.0612 = 6.7686 < 8.7992] w=0.1204 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)G80.CA) [> 3.1302 = 5.2171 < 6.7822] w=0.1204 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)V78.CB) [> 3.1737 = 5.2895 < 6.8763] w=0.1204 to align # Constraint # added constraint: constraint((T0306)M29.CB, (T0306)C77.CB) [> 2.7621 = 4.6036 < 5.9846] w=0.1204 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)I81.CB) [> 2.6264 = 4.3774 < 5.6906] w=0.1204 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)V82.CB) [> 4.3455 = 7.2425 < 9.4152] w=0.1204 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)G80.CA) [> 3.2693 = 5.4489 < 7.0835] w=0.1204 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)I81.CB) [> 4.5691 = 7.6152 < 9.8998] w=0.1204 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)G80.CA) [> 3.9281 = 6.5469 < 8.5110] w=0.1204 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)I81.CB) [> 3.8277 = 6.3796 < 8.2934] w=0.1204 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)K23.CB) [> 4.7784 = 7.9640 < 10.3533] w=0.1183 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)L25.CB) [> 3.7889 = 6.3149 < 8.2093] w=0.1183 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)L24.CB) [> 3.3710 = 5.6184 < 7.3039] w=0.1183 to align # Constraint # added constraint: constraint((T0306)V5.CB, (T0306)A66.CB) [> 4.6197 = 7.6995 < 10.0094] w=0.1183 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)A66.CB) [> 3.9517 = 6.5862 < 8.5621] w=0.1183 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)A63.CB) [> 4.2473 = 7.0788 < 9.2024] w=0.1183 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)S62.CB) [> 3.6343 = 6.0572 < 7.8744] w=0.1183 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)W54.CB) [> 4.3490 = 7.2483 < 9.4228] w=0.1183 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)T71.CB) [> 4.2553 = 7.0921 < 9.2198] w=0.1183 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)L56.CB) [> 3.1244 = 5.2073 < 6.7695] w=0.1157 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)G50.CA) [> 4.7297 = 7.8829 < 10.2477] w=0.1157 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)S61.CB) [> 3.9994 = 6.6657 < 8.6654] w=0.1157 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)V58.CB) [> 4.0518 = 6.7530 < 8.7789] w=0.1157 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)N46.CB) [> 4.5918 = 7.6530 < 9.9489] w=0.1157 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)S61.CB) [> 3.0436 = 5.0727 < 6.5945] w=0.1157 to align # Constraint # added constraint: constraint((T0306)P32.CB, (T0306)V55.CB) [> 4.4587 = 7.4312 < 9.6606] w=0.1157 to align # Constraint # added constraint: constraint((T0306)K2.CB, (T0306)T13.CB) [> 3.4942 = 5.8236 < 7.5707] w=0.1146 to align # Constraint # added constraint: constraint((T0306)K2.CB, (T0306)C12.CB) [> 4.0477 = 6.7462 < 8.7700] w=0.1146 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)G80.CA) [> 3.5111 = 5.8519 < 7.6074] w=0.1131 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)I79.CB) [> 4.0070 = 6.6783 < 8.6818] w=0.1103 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)E84.CB) [> 4.3510 = 7.2517 < 9.4272] w=0.1011 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)E84.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.1011 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)E84.CB) [> 4.3249 = 7.2081 < 9.3705] w=0.1011 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)V85.CB) [> 4.1681 = 6.9469 < 9.0309] w=0.1007 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)I81.CB) [> 4.1228 = 6.8713 < 8.9328] w=0.0995 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)D75.CB) [> 4.6168 = 7.6947 < 10.0031] w=0.0912 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)V82.CB) [> 2.5580 = 4.2634 < 5.5424] w=0.0912 to align # Constraint # added constraint: constraint((T0306)E28.CB, (T0306)V82.CB) [> 4.2845 = 7.1408 < 9.2830] w=0.0912 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)I79.CB) [> 2.9228 = 4.8713 < 6.3327] w=0.0912 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)G80.CA) [> 3.1870 = 5.3116 < 6.9051] w=0.0912 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)I81.CB) [> 3.8357 = 6.3928 < 8.3107] w=0.0912 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)V82.CB) [> 3.4471 = 5.7452 < 7.4687] w=0.0912 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)I79.CB) [> 4.4072 = 7.3454 < 9.5490] w=0.0912 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)C77.CB) [> 3.9384 = 6.5640 < 8.5332] w=0.0912 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)I79.CB) [> 2.4867 = 4.1445 < 5.3879] w=0.0912 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)V78.CB) [> 4.1446 = 6.9076 < 8.9799] w=0.0912 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)D75.CB) [> 4.2241 = 7.0402 < 9.1523] w=0.0912 to align # Constraint # added constraint: constraint((T0306)I10.CB, (T0306)D31.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.0907 to align # Constraint # added constraint: constraint((T0306)H16.CB, (T0306)M26.CB) [> 3.5246 = 5.8744 < 7.6367] w=0.0907 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)S62.CB) [> 4.1031 = 6.8384 < 8.8900] w=0.0877 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)V55.CB) [> 3.0253 = 5.0422 < 6.5549] w=0.0877 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)W54.CB) [> 3.6536 = 6.0893 < 7.9161] w=0.0877 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)L57.CB) [> 4.2634 = 7.1056 < 9.2373] w=0.0877 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)L56.CB) [> 4.0081 = 6.6802 < 8.6842] w=0.0877 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)M26.CB) [> 3.1194 = 5.1989 < 6.7586] w=0.0877 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)L25.CB) [> 4.5659 = 7.6099 < 9.8928] w=0.0877 to align # Constraint # added constraint: constraint((T0306)I79.CB, (T0306)F93.CB) [> 3.4657 = 5.7762 < 7.5091] w=0.0877 to align # Constraint # added constraint: constraint((T0306)I79.CB, (T0306)I92.CB) [> 4.6031 = 7.6719 < 9.9734] w=0.0877 to align # Constraint # added constraint: constraint((T0306)V78.CB, (T0306)F93.CB) [> 4.1944 = 6.9907 < 9.0879] w=0.0877 to align # Constraint # added constraint: constraint((T0306)C77.CB, (T0306)F93.CB) [> 3.2293 = 5.3822 < 6.9969] w=0.0877 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)V86.CB) [> 3.6790 = 6.1317 < 7.9712] w=0.0877 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)V85.CB) [> 3.7197 = 6.1995 < 8.0593] w=0.0877 to align # Constraint # added constraint: constraint((T0306)S59.CB, (T0306)V85.CB) [> 3.2511 = 5.4186 < 7.0441] w=0.0877 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)F93.CB) [> 4.5156 = 7.5260 < 9.7838] w=0.0877 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)C77.CB) [> 4.0628 = 6.7714 < 8.8028] w=0.0877 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)G80.CA) [> 4.0864 = 6.8107 < 8.8540] w=0.0862 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)G80.CA) [> 3.2102 = 5.3504 < 6.9555] w=0.0853 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)T51.CB) [> 4.0587 = 6.7646 < 8.7939] w=0.0849 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)L56.CB) [> 2.2397 = 3.7329 < 4.8528] w=0.0832 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)C40.CB) [> 3.6344 = 6.0574 < 7.8745] w=0.0832 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)A41.CB) [> 3.6973 = 6.1622 < 8.0108] w=0.0832 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)N46.CB) [> 4.0180 = 6.6967 < 8.7057] w=0.0805 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)I81.CB) [> 2.3930 = 3.9884 < 5.1849] w=0.0805 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)V82.CB) [> 3.6382 = 6.0636 < 7.8827] w=0.0805 to align # Constraint # added constraint: constraint((T0306)G8.CA, (T0306)A66.CB) [> 3.7698 = 6.2831 < 8.1680] w=0.0788 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)D83.CB) [> 3.3102 = 5.5171 < 7.1722] w=0.0779 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)D83.CB) [> 3.7952 = 6.3253 < 8.2229] w=0.0779 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)C12.CB) [> 3.5464 = 5.9106 < 7.6838] w=0.0752 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)T13.CB) [> 4.7608 = 7.9348 < 10.3152] w=0.0752 to align # Constraint # added constraint: constraint((T0306)L3.CB, (T0306)L25.CB) [> 3.7120 = 6.1867 < 8.0427] w=0.0752 to align # Constraint # added constraint: constraint((T0306)A4.CB, (T0306)T13.CB) [> 4.0309 = 6.7181 < 8.7336] w=0.0752 to align # Constraint # added constraint: constraint((T0306)C12.CB, (T0306)I47.CB) [> 3.3272 = 5.5453 < 7.2090] w=0.0752 to align # Constraint # added constraint: constraint((T0306)L24.CB, (T0306)V55.CB) [> 4.3745 = 7.2908 < 9.4780] w=0.0752 to align # Constraint # added constraint: constraint((T0306)L25.CB, (T0306)I47.CB) [> 3.4164 = 5.6940 < 7.4022] w=0.0752 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)I47.CB) [> 4.6649 = 7.7749 < 10.1074] w=0.0752 to align # Constraint # added constraint: constraint((T0306)V27.CB, (T0306)I47.CB) [> 4.6974 = 7.8289 < 10.1776] w=0.0752 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)D75.CB) [> 4.7339 = 7.8899 < 10.2569] w=0.0616 to align # Constraint # added constraint: constraint((T0306)G80.CA, (T0306)F93.CB) [> 4.3700 = 7.2833 < 9.4683] w=0.0585 to align # Constraint # added constraint: constraint((T0306)G80.CA, (T0306)I92.CB) [> 3.0406 = 5.0676 < 6.5879] w=0.0585 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)D83.CB) [> 3.1275 = 5.2126 < 6.7764] w=0.0554 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)D83.CB) [> 4.6216 = 7.7026 < 10.0134] w=0.0554 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)D75.CB) [> 4.4720 = 7.4533 < 9.6893] w=0.0537 to align # Constraint # added constraint: constraint((T0306)V55.CB, (T0306)S72.CB) [> 2.6940 = 4.4901 < 5.8371] w=0.0537 to align # Constraint # added constraint: constraint((T0306)W54.CB, (T0306)S72.CB) [> 4.0227 = 6.7046 < 8.7160] w=0.0537 to align # Constraint # added constraint: constraint((T0306)Q9.CB, (T0306)V86.CB) [> 4.5485 = 7.5809 < 9.8551] w=0.0505 to align # Constraint # added constraint: constraint((T0306)M26.CB, (T0306)V86.CB) [> 4.4394 = 7.3990 < 9.6186] w=0.0505 to align # Constraint # added constraint: constraint((T0306)T51.CB, (T0306)D83.CB) [> 4.3540 = 7.2566 < 9.4336] w=0.0505 to align # Constraint # added constraint: constraint((T0306)A41.CB, (T0306)I81.CB) [> 3.3143 = 5.5238 < 7.1810] w=0.0502 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)G80.CA) [> 3.9509 = 6.5848 < 8.5602] w=0.0502 to align # Constraint # added constraint: constraint((T0306)A43.CB, (T0306)I81.CB) [> 3.1230 = 5.2050 < 6.7665] w=0.0502 to align # Constraint # added constraint: constraint((T0306)I44.CB, (T0306)I81.CB) [> 4.5124 = 7.5206 < 9.7768] w=0.0502 to align # Constraint # added constraint: constraint((T0306)I47.CB, (T0306)G80.CA) [> 4.7856 = 7.9760 < 10.3688] w=0.0502 to align # Constraint # added constraint: constraint((T0306)K2.CB, (T0306)V11.CB) [> 4.2690 = 7.1150 < 9.2495] w=0.0394 to align # Constraint # added constraint: constraint((T0306)K2.CB, (T0306)V14.CB) [> 3.8259 = 6.3764 < 8.2894] w=0.0394 to align # Constraint # added constraint: constraint((T0306)K23.CB, (T0306)W54.CB) [> 4.6541 = 7.7569 < 10.0840] w=0.0302 to align # Constraint # added constraint: constraint((T0306)V58.CB, (T0306)E84.CB) [> 3.5722 = 5.9537 < 7.7398] w=0.0292 to align # Constraint # added constraint: constraint((T0306)G60.CA, (T0306)E84.CB) [> 3.1554 = 5.2589 < 6.8366] w=0.0292 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)D83.CB) [> 2.4773 = 4.1289 < 5.3676] w=0.0277 to align # Constraint # added constraint: constraint((T0306)C40.CB, (T0306)I92.CB) [> 4.3502 = 7.2503 < 9.4254] w=0.0277 to align # Constraint # added constraint: constraint((T0306)T13.CB, (T0306)I81.CB) [> 3.1643 = 5.2738 < 6.8560] w=0.0277 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)G80.CA) [> 3.8515 = 6.4192 < 8.3450] w=0.0277 to align # Constraint # added constraint: constraint((T0306)V11.CB, (T0306)I79.CB) [> 4.1574 = 6.9290 < 9.0077] w=0.0277 to align # Constraint # added constraint: constraint((T0306)D83.CB, (T0306)I92.CB) [> 4.2813 = 7.1355 < 9.2761] w=0.0277 to align # Constraint # added constraint: constraint((T0306)L57.CB, (T0306)I81.CB) [> 4.7557 = 7.9261 < 10.3039] w=0.0277 to align # Constraint # added constraint: constraint((T0306)N46.CB, (T0306)V55.CB) [> 3.2872 = 5.4787 < 7.1223] w=0.0187 to align # Constraint # added constraint: constraint((T0306)V42.CB, (T0306)L76.CB) [> 4.5990 = 7.6650 < 9.9645] w=0.0062 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0306/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0306/decoys/ # ReadConformPDB reading from PDB file ../6mer/decoys/T0306.6mer-2a10.pdb.gz looking for chain 'A' model 1 # choosing archetypes in rotamer library # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 6mer//6mer-2a10 # ReadConformPDB reading from PDB file ../6mer/decoys/T0306.model4_6mer_renumber.pdb.gz looking for chain 'A' model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 6mer//model4_6mer_renumber # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0306)D83.C and (T0306)E84.N only 0 apart, marking (T0306)E84.N as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.CA only 0 apart, marking (T0306)E84.CA as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.CA only 0 apart, marking (T0306)E84.CA as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.CB only 0 apart, marking (T0306)E84.CB as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.CB only 0 apart, marking (T0306)E84.CB as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.CB only 0 apart, marking (T0306)E84.CB as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.CG only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.CG only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.CG only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.CG only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)E84.CD only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.CD only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.CD only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.CD only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.CD only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.OE1 only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.OE2 only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.O only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.O and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.N and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)D83.C and (T0306)E84.C only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.N only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.N only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.N only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.N only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.N only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.N only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.N only 0 apart, marking (T0306)E84.CB as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.N only 0 apart, marking (T0306)E84.CA as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.N only 0 apart, marking (T0306)E84.N as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.N only 0 apart, marking (T0306)V85.N as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.CA only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.CB only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.CG1 only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.CG2 only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.O only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V85.C only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.N only 0 apart, marking (T0306)V85.C as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.N only 0 apart, marking (T0306)V85.O as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.N only 0 apart, marking (T0306)V85.CG2 as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.N only 0 apart, marking (T0306)V85.CG1 as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.N only 0 apart, marking (T0306)V85.CB as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.N only 0 apart, marking (T0306)V85.CA as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.N only 0 apart, marking (T0306)V85.N as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.N only 0 apart, marking (T0306)E84.C as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.N only 0 apart, marking (T0306)E84.O as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.N only 0 apart, marking (T0306)E84.OE2 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.N only 0 apart, marking (T0306)E84.OE1 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.N only 0 apart, marking (T0306)E84.CD as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.N only 0 apart, marking (T0306)E84.CG as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.N only 0 apart, marking (T0306)E84.CB as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.N only 0 apart, marking (T0306)E84.CA as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.N only 0 apart, marking (T0306)E84.N as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.N only 0 apart, marking (T0306)V86.N as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.CA only 0 apart, marking (T0306)V86.CA as missing WARNING: atoms too close: (T0306)V86.CA and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.CB only 0 apart, marking (T0306)V86.CB as missing WARNING: atoms too close: (T0306)V86.CB and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V86.CA and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.CG1 only 0 apart, marking (T0306)V86.CG1 as missing WARNING: atoms too close: (T0306)V86.CG1 and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V86.CB and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V86.CA and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.CG2 only 0 apart, marking (T0306)V86.CG2 as missing WARNING: atoms too close: (T0306)V86.CG2 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V86.CG1 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V86.CB and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V86.CA and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.O only 0 apart, marking (T0306)V86.O as missing WARNING: atoms too close: (T0306)V86.O and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V86.CG2 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V86.CG1 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V86.CB and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V86.CA and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V86.N and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.C and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.O and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.CG2 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.CG1 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.CB and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.CA and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)V85.N and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.C and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.O and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.OE2 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.OE1 and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.CD and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.CG and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.CB and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.CA and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)E84.N and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing WARNING: atoms too close: (T0306)D83.C and (T0306)V86.C only 0 apart, marking (T0306)V86.C as missing # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 59, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 228, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 59, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 228, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation MIG_FROST_FLEX_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 105, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 107, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 95 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0306 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 247 model score 1.5680 model score 1.2487 model score 1.8489 model score 1.8572 model score 2.0370 model score 1.8446 model score 1.8455 model score 1.3226 model score 1.2988 model score 1.2988 model score 1.3160 model score 1.3102 model score 1.2408 model score 1.3231 model score 1.1386 model score 1.1254 model score 1.2988 model score 1.7363 model score 1.1476 model score 2.2633 model score 1.1280 model score 2.1436 model score 1.1280 model score 0.9436 model score 1.1329 model score 1.0754 model score 1.3448 model score 1.3611 model score 1.4516 model score 1.3081 model score 1.3595 model score 1.1312 model score 1.2748 model score 1.3342 model score 1.3242 model score 1.2792 model score 1.5464 model score 1.5259 model score 1.6061 model score 2.2166 model score 1.8026 model score 1.0405 model score 1.3237 model score 1.2766 model score 1.2775 model score 1.2777 model score 1.2767 model score 1.2770 model score 1.2827 model score 1.4813 model score 1.3662 model score 1.4440 model score 1.2210 model score 1.6234 model score 1.5464 model score 1.3242 model score 1.3342 model score 1.7421 model score 1.1476 model score 1.8776 model score 1.5019 model score 1.3542 model score 1.8964 model score 1.2767 model score 1.2776 model score 1.2780 model score 1.2781 model score 1.2772 model score 1.2776 model score 1.2780 model score 1.2781 model score 1.2772 model score 1.2779 model score 1.4572 model score 1.5419 model score 1.5229 model score 1.1793 model score 1.3620 model score 1.2778 model score 1.2771 model score 1.2780 model score 1.2771 model score 1.2771 model score 1.3725 model score 1.7421 model score 1.4039 model score 1.5436 model score 1.5372 model score 2.0640 model score 2.3282 model score 1.4407 model score 1.9513 model score 1.7696 model score 1.2523 model score 1.2523 model score 1.2817 model score 1.1041 model score 1.6312 model score 1.0804 model score 1.0814 model score 1.3915 model score 1.4433 model score 1.0410 model score 1.0697 model score 1.0260 model score 1.0747 model score 1.2771 model score 1.2784 model score 1.2292 model score 1.3916 model score 1.3380 model score 1.4005 model score 1.3881 model score 0.8705 model score 0.7875 model score 0.9465 model score 1.0444 model score 1.0587 model score 1.6589 model score 1.5349 model score 1.9546 model score 1.0378 model score 0.9656 model score 1.0055 model score 0.9599 model score 1.1214 model score 1.6957 model score 1.0630 model score 1.6495 model score 1.6621 model score 1.6724 model score 1.6782 model score 1.6875 model score 1.3807 model score 1.3807 model score 1.5042 model score 1.9167 model score 1.6455 model score 1.9719 model score 1.5790 model score 1.9097 model score 0.9475 model score 1.5425 model score 1.5425 model score 1.4417 model score 1.4417 model score 1.3019 model score 1.3230 model score 1.3995 model score 1.2075 model score 1.4825 model score 1.1399 model score 1.2836 model score 1.3805 model score 1.1846 model score 1.3789 model score 1.1158 model score 1.2715 model score 1.3596 model score 1.1660 model score 1.3575 model score 0.8502 model score 1.3580 model score 1.1568 model score 1.0011 model score 1.2272 model score 1.2781 model score 1.2781 model score 1.2781 model score 1.2779 model score 1.2779 model score 1.2758 model score 1.2771 model score 1.2771 model score 1.2780 model score 1.2772 model score 1.6779 model score 1.0141 model score 2.2919 model score 1.0458 model score 0.7520 model score 1.6122 model score 1.5117 model score 1.3019 model score 1.3407 model score 1.3230 model score 1.6487 model score 1.2177 model score 1.1214 model score 1.0254 model score 1.3818 model score 1.5322 model score 1.5130 model score 1.8073 model score 1.3579 model score 1.3019 model score 1.2782 model score 1.2777 model score 1.2777 model score 1.2782 model score 1.2782 model score 1.0108 model score 1.2775 model score 1.2775 model score 1.2771 model score 1.2771 model score 1.2781 model score 1.0606 model score 0.8970 model score 0.7779 model score 1.1082 model score 1.9151 model score 0.9634 model score 0.9944 model score 1.2771 model score 1.2778 model score 1.2771 model score 1.2781 model score 1.2771 model score 1.3558 model score 1.3817 model score 1.5322 model score 1.3595 model score 1.2589 model score 1.3689 model score 2.1997 model score 2.0188 model score 2.0341 model score 2.0005 model score 1.7125 model score 1.3077 model score 1.3548 model score 1.4977 model score 1.6107 model score 1.3059 model score 1.2814 model score 1.2852 model score 1.2849 model score 1.2722 model score 1.7561 model score 1.6589 model score 2.1650 model score 2.1747 model score 1.2735 model score 2.0293 model score 1.3575 model score 1.5832 weight: 0.5340 eval: 1.5680 min: 0.7520 max: 2.3282 weight: 0.7164 eval: 1.2487 min: 0.7520 max: 2.3282 weight: 0.3737 eval: 1.8489 min: 0.7520 max: 2.3282 weight: 0.3689 eval: 1.8572 min: 0.7520 max: 2.3282 weight: 0.2663 eval: 2.0370 min: 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weight: 0.5278 eval: 1.5790 min: 0.7520 max: 2.3282 weight: 0.3390 eval: 1.9097 min: 0.7520 max: 2.3282 weight: 0.8884 eval: 0.9475 min: 0.7520 max: 2.3282 weight: 0.5486 eval: 1.5425 min: 0.7520 max: 2.3282 weight: 0.5486 eval: 1.5425 min: 0.7520 max: 2.3282 weight: 0.6062 eval: 1.4417 min: 0.7520 max: 2.3282 weight: 0.6062 eval: 1.4417 min: 0.7520 max: 2.3282 weight: 0.6860 eval: 1.3019 min: 0.7520 max: 2.3282 weight: 0.6740 eval: 1.3230 min: 0.7520 max: 2.3282 weight: 0.6303 eval: 1.3995 min: 0.7520 max: 2.3282 weight: 0.7399 eval: 1.2075 min: 0.7520 max: 2.3282 weight: 0.5829 eval: 1.4825 min: 0.7520 max: 2.3282 weight: 0.7785 eval: 1.1399 min: 0.7520 max: 2.3282 weight: 0.6965 eval: 1.2836 min: 0.7520 max: 2.3282 weight: 0.6411 eval: 1.3805 min: 0.7520 max: 2.3282 weight: 0.7530 eval: 1.1846 min: 0.7520 max: 2.3282 weight: 0.6421 eval: 1.3789 min: 0.7520 max: 2.3282 weight: 0.7923 eval: 1.1158 min: 0.7520 max: 2.3282 weight: 0.7034 eval: 1.2715 min: 0.7520 max: 2.3282 weight: 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0.7520 max: 2.3282 weight: 0.6998 eval: 1.2777 min: 0.7520 max: 2.3282 weight: 0.6998 eval: 1.2777 min: 0.7520 max: 2.3282 weight: 0.6995 eval: 1.2782 min: 0.7520 max: 2.3282 weight: 0.6996 eval: 1.2782 min: 0.7520 max: 2.3282 weight: 0.8523 eval: 1.0108 min: 0.7520 max: 2.3282 weight: 0.7000 eval: 1.2775 min: 0.7520 max: 2.3282 weight: 0.6999 eval: 1.2775 min: 0.7520 max: 2.3282 weight: 0.7002 eval: 1.2771 min: 0.7520 max: 2.3282 weight: 0.7002 eval: 1.2771 min: 0.7520 max: 2.3282 weight: 0.6996 eval: 1.2781 min: 0.7520 max: 2.3282 weight: 0.8238 eval: 1.0606 min: 0.7520 max: 2.3282 weight: 0.9172 eval: 0.8970 min: 0.7520 max: 2.3282 weight: 0.9852 eval: 0.7779 min: 0.7520 max: 2.3282 weight: 0.7967 eval: 1.1082 min: 0.7520 max: 2.3282 weight: 0.3359 eval: 1.9151 min: 0.7520 max: 2.3282 weight: 0.8793 eval: 0.9634 min: 0.7520 max: 2.3282 weight: 0.8616 eval: 0.9944 min: 0.7520 max: 2.3282 weight: 0.7002 eval: 1.2771 min: 0.7520 max: 2.3282 weight: 0.6998 eval: 1.2778 min: 0.7520 max: 2.3282 weight: 0.7002 eval: 1.2771 min: 0.7520 max: 2.3282 weight: 0.6996 eval: 1.2781 min: 0.7520 max: 2.3282 weight: 0.7002 eval: 1.2771 min: 0.7520 max: 2.3282 weight: 0.6553 eval: 1.3558 min: 0.7520 max: 2.3282 weight: 0.6405 eval: 1.3817 min: 0.7520 max: 2.3282 weight: 0.5545 eval: 1.5322 min: 0.7520 max: 2.3282 weight: 0.6531 eval: 1.3595 min: 0.7520 max: 2.3282 weight: 0.7106 eval: 1.2589 min: 0.7520 max: 2.3282 weight: 0.6478 eval: 1.3689 min: 0.7520 max: 2.3282 weight: 0.1733 eval: 2.1997 min: 0.7520 max: 2.3282 weight: 0.2767 eval: 2.0188 min: 0.7520 max: 2.3282 weight: 0.2680 eval: 2.0341 min: 0.7520 max: 2.3282 weight: 0.2871 eval: 2.0005 min: 0.7520 max: 2.3282 weight: 0.4515 eval: 1.7125 min: 0.7520 max: 2.3282 weight: 0.6827 eval: 1.3077 min: 0.7520 max: 2.3282 weight: 0.6558 eval: 1.3548 min: 0.7520 max: 2.3282 weight: 0.5742 eval: 1.4977 min: 0.7520 max: 2.3282 weight: 0.5097 eval: 1.6107 min: 0.7520 max: 2.3282 weight: 0.6837 eval: 1.3059 min: 0.7520 max: 2.3282 weight: 0.6977 eval: 1.2814 min: 0.7520 max: 2.3282 weight: 0.6955 eval: 1.2852 min: 0.7520 max: 2.3282 weight: 0.6957 eval: 1.2849 min: 0.7520 max: 2.3282 weight: 0.7030 eval: 1.2722 min: 0.7520 max: 2.3282 weight: 0.4266 eval: 1.7561 min: 0.7520 max: 2.3282 weight: 0.4822 eval: 1.6589 min: 0.7520 max: 2.3282 weight: 0.1932 eval: 2.1650 min: 0.7520 max: 2.3282 weight: 0.1877 eval: 2.1747 min: 0.7520 max: 2.3282 weight: 0.7022 eval: 1.2735 min: 0.7520 max: 2.3282 weight: 0.2707 eval: 2.0293 min: 0.7520 max: 2.3282 weight: 0.6543 eval: 1.3575 min: 0.7520 max: 2.3282 weight: 0.5254 eval: 1.5832 min: 0.7520 max: 2.3282 Adding 3587 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -170.8817, CN propb: -170.8817 weights: 0.2693 constraints: 585 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 585 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 585 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 3002 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 3002 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 3587 # command: