# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0305/ # command:# Making conformation for sequence T0305 numbered 1 through 297 Created new target T0305 from T0305.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0305/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0305//projects/compbio/experiments/protein-predict/casp7/T0305/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0305//projects/compbio/experiments/protein-predict/casp7/T0305/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0305/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0305/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0305)S250.CB, (T0305)F266.CB) [> 3.2779 = 5.4632 < 7.1022] w=1.0000 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)I270.CB) [> 3.8513 = 6.4188 < 8.3445] w=1.0000 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)L267.CB) [> 3.6564 = 6.0939 < 7.9221] w=1.0000 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)F266.CB) [> 3.3074 = 5.5123 < 7.1660] w=1.0000 to align # Constraint # added constraint: constraint((T0305)I246.CB, (T0305)I270.CB) [> 3.8352 = 6.3920 < 8.3096] w=1.0000 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)I287.CB) [> 3.6096 = 6.0160 < 7.8208] w=1.0000 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)I270.CB) [> 3.8314 = 6.3856 < 8.3013] w=1.0000 to align # Constraint # added constraint: constraint((T0305)V239.CB, (T0305)R274.CB) [> 3.9119 = 6.5198 < 8.4757] w=1.0000 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)T242.CB) [> 2.9940 = 4.9900 < 6.4870] w=0.9843 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)G243.CA) [> 4.0221 = 6.7036 < 8.7146] w=0.9843 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)I246.CB) [> 3.9720 = 6.6200 < 8.6060] w=0.9843 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)R274.CB) [> 3.2910 = 5.4850 < 7.1304] w=0.9843 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)L232.CB) [> 3.8023 = 6.3372 < 8.2383] w=0.9843 to align # Constraint # added constraint: constraint((T0305)Q100.CB, (T0305)G238.CA) [> 3.1854 = 5.3091 < 6.9018] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)L232.CB) [> 3.6907 = 6.1512 < 7.9966] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)L232.CB) [> 4.2894 = 7.1490 < 9.2937] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)L232.CB) [> 2.7866 = 4.6444 < 6.0377] w=0.9843 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)L232.CB) [> 4.2097 = 7.0162 < 9.1211] w=0.9843 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)Y245.CB) [> 3.8946 = 6.4910 < 8.4383] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)R241.CB) [> 2.6305 = 4.3841 < 5.6993] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)T242.CB) [> 3.6216 = 6.0360 < 7.8469] w=0.9843 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)Y245.CB) [> 3.6817 = 6.1362 < 7.9770] w=0.9843 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)T126.CB) [> 4.3023 = 7.1705 < 9.3217] w=0.9765 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)G238.CA) [> 4.1696 = 6.9493 < 9.0341] w=0.9765 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)I248.CB) [> 3.4910 = 5.8184 < 7.5639] w=0.9765 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)Q283.CB) [> 2.9738 = 4.9563 < 6.4432] w=0.9765 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)I287.CB) [> 3.0778 = 5.1297 < 6.6686] w=0.9765 to align # Constraint # added constraint: constraint((T0305)V263.CB, (T0305)I287.CB) [> 3.4438 = 5.7396 < 7.4615] w=0.9765 to align # Constraint # added constraint: constraint((T0305)L267.CB, (T0305)Y284.CB) [> 4.3755 = 7.2924 < 9.4802] w=0.9765 to align # Constraint # added constraint: constraint((T0305)R241.CB, (T0305)Q283.CB) [> 4.4586 = 7.4310 < 9.6603] w=0.9736 to align # Constraint # added constraint: constraint((T0305)V233.CB, (T0305)I246.CB) [> 3.6531 = 6.0884 < 7.9150] w=0.9711 to align # Constraint # added constraint: constraint((T0305)V233.CB, (T0305)Y245.CB) [> 3.4392 = 5.7320 < 7.4517] w=0.9711 to align # Constraint # added constraint: constraint((T0305)V233.CB, (T0305)T242.CB) [> 2.8528 = 4.7548 < 6.1812] w=0.9711 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)Y198.CB) [> 3.9817 = 6.6361 < 8.6270] w=0.9602 to align # Constraint # added constraint: constraint((T0305)I248.CB, (T0305)I287.CB) [> 3.6469 = 6.0781 < 7.9015] w=0.9592 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)F286.CB) [> 3.8044 = 6.3407 < 8.2429] w=0.9592 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)D249.CB) [> 3.4219 = 5.7031 < 7.4141] w=0.9572 to align # Constraint # added constraint: constraint((T0305)T119.CB, (T0305)G229.CA) [> 3.5101 = 5.8502 < 7.6053] w=0.9558 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)V233.CB) [> 4.0995 = 6.8326 < 8.8823] w=0.9554 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)W201.CB) [> 3.6637 = 6.1061 < 7.9380] w=0.9554 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)V233.CB) [> 2.7290 = 4.5483 < 5.9128] w=0.9554 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)V231.CB) [> 3.7771 = 6.2951 < 8.1837] w=0.9554 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)V231.CB) [> 2.8349 = 4.7249 < 6.1424] w=0.9554 to align # Constraint # added constraint: constraint((T0305)T119.CB, (T0305)P230.CB) [> 3.4920 = 5.8199 < 7.5659] w=0.9554 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)V233.CB) [> 3.2985 = 5.4975 < 7.1467] w=0.9554 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)G229.CA) [> 3.8548 = 6.4246 < 8.3520] w=0.9554 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)Y196.CB) [> 4.2064 = 7.0107 < 9.1139] w=0.9523 to align # Constraint # added constraint: constraint((T0305)T119.CB, (T0305)L232.CB) [> 2.9883 = 4.9804 < 6.4745] w=0.9523 to align # Constraint # added constraint: constraint((T0305)V213.CB, (T0305)I248.CB) [> 3.9272 = 6.5453 < 8.5089] w=0.9519 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)V263.CB) [> 4.1636 = 6.9393 < 9.0211] w=0.9476 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)V231.CB) [> 4.4766 = 7.4610 < 9.6993] w=0.9476 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)A223.CB) [> 3.4873 = 5.8121 < 7.5558] w=0.9400 to align # Constraint # added constraint: constraint((T0305)Q117.CB, (T0305)P230.CB) [> 3.5043 = 5.8406 < 7.5928] w=0.9313 to align # Constraint # added constraint: constraint((T0305)S220.CB, (T0305)V231.CB) [> 4.1243 = 6.8738 < 8.9360] w=0.9283 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)C235.CB) [> 4.1597 = 6.9328 < 9.0127] w=0.9265 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)S236.CB) [> 3.5492 = 5.9154 < 7.6901] w=0.9265 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)C235.CB) [> 2.7630 = 4.6050 < 5.9865] w=0.9265 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)C235.CB) [> 2.9640 = 4.9399 < 6.4219] w=0.9265 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)S236.CB) [> 3.1966 = 5.3276 < 6.9259] w=0.9265 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)F266.CB) [> 3.6514 = 6.0857 < 7.9113] w=0.9250 to align # Constraint # added constraint: constraint((T0305)T119.CB, (T0305)V231.CB) [> 3.9716 = 6.6193 < 8.6052] w=0.9234 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)Y196.CB) [> 4.0039 = 6.6732 < 8.6751] w=0.9234 to align # Constraint # added constraint: constraint((T0305)Q100.CB, (T0305)A237.CB) [> 3.4084 = 5.6807 < 7.3850] w=0.9154 to align # Constraint # added constraint: constraint((T0305)V233.CB, (T0305)G243.CA) [> 4.4690 = 7.4483 < 9.6828] w=0.9137 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)V278.CB) [> 3.3404 = 5.5673 < 7.2375] w=0.9133 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)V278.CB) [> 3.7011 = 6.1685 < 8.0190] w=0.9133 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)V278.CB) [> 3.9117 = 6.5195 < 8.4754] w=0.9133 to align # Constraint # added constraint: constraint((T0305)L267.CB, (T0305)V278.CB) [> 3.3632 = 5.6053 < 7.2869] w=0.9133 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)V239.CB) [> 4.2930 = 7.1549 < 9.3014] w=0.9112 to align # Constraint # added constraint: constraint((T0305)G240.CA, (T0305)Q283.CB) [> 3.6119 = 6.0199 < 7.8258] w=0.9105 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)G238.CA) [> 3.7308 = 6.2180 < 8.0834] w=0.9105 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)G238.CA) [> 3.3113 = 5.5189 < 7.1745] w=0.9105 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)S220.CB) [> 3.5795 = 5.9658 < 7.7555] w=0.9076 to align # Constraint # added constraint: constraint((T0305)V263.CB, (T0305)H288.CB) [> 3.6417 = 6.0694 < 7.8903] w=0.9030 to align # Constraint # added constraint: constraint((T0305)N118.CB, (T0305)G229.CA) [> 2.8301 = 4.7169 < 6.1319] w=0.9027 to align # Constraint # added constraint: constraint((T0305)W201.CB, (T0305)R241.CB) [> 3.5633 = 5.9389 < 7.7206] w=0.9022 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)I287.CB) [> 4.4324 = 7.3873 < 9.6034] w=0.9015 to align # Constraint # added constraint: constraint((T0305)S221.CB, (T0305)D249.CB) [> 4.2349 = 7.0582 < 9.1757] w=0.8979 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)H234.CB) [> 4.1796 = 6.9660 < 9.0558] w=0.8977 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)H234.CB) [> 2.8440 = 4.7400 < 6.1619] w=0.8977 to align # Constraint # added constraint: constraint((T0305)Q100.CB, (T0305)H234.CB) [> 3.7519 = 6.2532 < 8.1291] w=0.8977 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)H234.CB) [> 2.8819 = 4.8031 < 6.2440] w=0.8977 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)V231.CB) [> 4.2356 = 7.0593 < 9.1770] w=0.8977 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)H234.CB) [> 3.6989 = 6.1648 < 8.0142] w=0.8977 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)H234.CB) [> 4.1489 = 6.9148 < 8.9892] w=0.8977 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)L232.CB) [> 2.7429 = 4.5715 < 5.9429] w=0.8977 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)I246.CB) [> 3.1764 = 5.2939 < 6.8821] w=0.8977 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)H234.CB) [> 4.4529 = 7.4214 < 9.6479] w=0.8948 to align # Constraint # added constraint: constraint((T0305)L267.CB, (T0305)L277.CB) [> 4.2183 = 7.0304 < 9.1396] w=0.8906 to align # Constraint # added constraint: constraint((T0305)P207.CB, (T0305)F286.CB) [> 4.0182 = 6.6970 < 8.7061] w=0.8902 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)P230.CB) [> 3.0620 = 5.1034 < 6.6344] w=0.8900 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)L277.CB) [> 2.6176 = 4.3627 < 5.6715] w=0.8898 to align # Constraint # added constraint: constraint((T0305)V239.CB, (T0305)L277.CB) [> 2.8975 = 4.8292 < 6.2779] w=0.8898 to align # Constraint # added constraint: constraint((T0305)G205.CA, (T0305)E282.CB) [> 3.5279 = 5.8799 < 7.6438] w=0.8838 to align # Constraint # added constraint: constraint((T0305)V239.CB, (T0305)Q279.CB) [> 3.4462 = 5.7436 < 7.4667] w=0.8834 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)H197.CB) [> 2.7783 = 4.6305 < 6.0197] w=0.8834 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)Y196.CB) [> 4.2052 = 7.0087 < 9.1113] w=0.8834 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)T99.CB) [> 4.4564 = 7.4273 < 9.6554] w=0.8790 to align # Constraint # added constraint: constraint((T0305)I248.CB, (T0305)A290.CB) [> 3.1483 = 5.2472 < 6.8214] w=0.8790 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)Y198.CB) [> 4.4501 = 7.4169 < 9.6419] w=0.8744 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)V231.CB) [> 4.2574 = 7.0957 < 9.2244] w=0.8688 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)P230.CB) [> 3.1221 = 5.2035 < 6.7646] w=0.8688 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)V233.CB) [> 3.4219 = 5.7032 < 7.4142] w=0.8688 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)V231.CB) [> 3.2244 = 5.3741 < 6.9863] w=0.8688 to align # Constraint # added constraint: constraint((T0305)V278.CB, (T0305)I287.CB) [> 4.1241 = 6.8735 < 8.9356] w=0.8672 to align # Constraint # added constraint: constraint((T0305)V206.CB, (T0305)F286.CB) [> 2.6537 = 4.4227 < 5.7496] w=0.8653 to align # Constraint # added constraint: constraint((T0305)V263.CB, (T0305)L291.CB) [> 3.7627 = 6.2711 < 8.1524] w=0.8637 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)L291.CB) [> 3.2095 = 5.3491 < 6.9538] w=0.8637 to align # Constraint # added constraint: constraint((T0305)V213.CB, (T0305)A290.CB) [> 3.6710 = 6.1184 < 7.9539] w=0.8598 to align # Constraint # added constraint: constraint((T0305)Q100.CB, (T0305)S236.CB) [> 4.1775 = 6.9624 < 9.0511] w=0.8576 to align # Constraint # added constraint: constraint((T0305)G240.CA, (T0305)T280.CB) [> 4.4198 = 7.3663 < 9.5761] w=0.8530 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)Y245.CB) [> 4.1141 = 6.8568 < 8.9138] w=0.8522 to align # Constraint # added constraint: constraint((T0305)A210.CB, (T0305)D289.CB) [> 3.0616 = 5.1027 < 6.6335] w=0.8501 to align # Constraint # added constraint: constraint((T0305)A210.CB, (T0305)A290.CB) [> 2.8932 = 4.8219 < 6.2685] w=0.8501 to align # Constraint # added constraint: constraint((T0305)L214.CB, (T0305)A290.CB) [> 3.7236 = 6.2060 < 8.0678] w=0.8501 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)Q195.CB) [> 2.9168 = 4.8614 < 6.3198] w=0.8451 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)Q195.CB) [> 4.5479 = 7.5798 < 9.8538] w=0.8451 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)Q273.CB) [> 2.7570 = 4.5950 < 5.9734] w=0.8450 to align # Constraint # added constraint: constraint((T0305)G240.CA, (T0305)L277.CB) [> 3.6327 = 6.0545 < 7.8709] w=0.8437 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)P230.CB) [> 3.5032 = 5.8386 < 7.5902] w=0.8402 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)I246.CB) [> 3.6447 = 6.0745 < 7.8969] w=0.8374 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)I270.CB) [> 3.5670 = 5.9450 < 7.7285] w=0.8374 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)Q117.CB) [> 3.8979 = 6.4964 < 8.4453] w=0.8371 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)S220.CB) [> 3.6912 = 6.1520 < 7.9976] w=0.8356 to align # Constraint # added constraint: constraint((T0305)N83.CB, (T0305)T99.CB) [> 3.7279 = 6.2132 < 8.0772] w=0.8355 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)A98.CB) [> 4.1036 = 6.8393 < 8.8911] w=0.8355 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)T99.CB) [> 2.1502 = 3.5836 < 4.6586] w=0.8355 to align # Constraint # added constraint: constraint((T0305)N85.CB, (T0305)A98.CB) [> 3.2976 = 5.4960 < 7.1448] w=0.8355 to align # Constraint # added constraint: constraint((T0305)N85.CB, (T0305)Q273.CB) [> 3.3613 = 5.6022 < 7.2829] w=0.8355 to align # Constraint # added constraint: constraint((T0305)N85.CB, (T0305)R274.CB) [> 2.4683 = 4.1139 < 5.3481] w=0.8355 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)M113.CB) [> 3.4781 = 5.7969 < 7.5359] w=0.8340 to align # Constraint # added constraint: constraint((T0305)L59.CB, (T0305)N275.CB) [> 3.9603 = 6.6006 < 8.5807] w=0.8340 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)N275.CB) [> 3.8170 = 6.3616 < 8.2701] w=0.8340 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)V263.CB) [> 3.6257 = 6.0428 < 7.8557] w=0.8321 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)V261.CB) [> 3.2412 = 5.4021 < 7.0227] w=0.8321 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)Y86.CB) [> 2.9670 = 4.9450 < 6.4285] w=0.8260 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)A84.CB) [> 4.0901 = 6.8168 < 8.8619] w=0.8260 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)N85.CB) [> 3.4931 = 5.8218 < 7.5684] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)A84.CB) [> 2.5252 = 4.2087 < 5.4713] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)N85.CB) [> 3.9750 = 6.6250 < 8.6125] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)Y86.CB) [> 3.6451 = 6.0751 < 7.8976] w=0.8260 to align # Constraint # added constraint: constraint((T0305)N83.CB, (T0305)Q100.CB) [> 2.8169 = 4.6948 < 6.1032] w=0.8260 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)M113.CB) [> 3.8052 = 6.3421 < 8.2447] w=0.8260 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)Q273.CB) [> 3.9626 = 6.6044 < 8.5857] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)R274.CB) [> 3.7699 = 6.2832 < 8.1681] w=0.8260 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)N85.CB) [> 2.7646 = 4.6076 < 5.9899] w=0.8260 to align # Constraint # added constraint: constraint((T0305)Y61.CB, (T0305)R274.CB) [> 3.8560 = 6.4266 < 8.3546] w=0.8260 to align # Constraint # added constraint: constraint((T0305)Y61.CB, (T0305)N85.CB) [> 3.7296 = 6.2160 < 8.0808] w=0.8260 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)R274.CB) [> 4.0229 = 6.7049 < 8.7163] w=0.8260 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)N85.CB) [> 2.9755 = 4.9591 < 6.4469] w=0.8260 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)N83.CB) [> 3.2240 = 5.3734 < 6.9854] w=0.8260 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)V239.CB) [> 3.5681 = 5.9469 < 7.7309] w=0.8260 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)A237.CB) [> 2.9504 = 4.9173 < 6.3925] w=0.8260 to align # Constraint # added constraint: constraint((T0305)Y196.CB, (T0305)S220.CB) [> 3.3837 = 5.6396 < 7.3314] w=0.8260 to align # Constraint # added constraint: constraint((T0305)Y196.CB, (T0305)R219.CB) [> 3.9634 = 6.6056 < 8.5873] w=0.8260 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)V192.CB) [> 3.5090 = 5.8483 < 7.6028] w=0.8260 to align # Constraint # added constraint: constraint((T0305)F169.CB, (T0305)Q195.CB) [> 3.4914 = 5.8191 < 7.5648] w=0.8260 to align # Constraint # added constraint: constraint((T0305)R167.CB, (T0305)H197.CB) [> 4.0873 = 6.8122 < 8.8559] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)Y196.CB) [> 3.3286 = 5.5476 < 7.2119] w=0.8260 to align # Constraint # added constraint: constraint((T0305)T165.CB, (T0305)T199.CB) [> 3.8208 = 6.3679 < 8.2783] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)I171.CB) [> 3.3063 = 5.5105 < 7.1637] w=0.8260 to align # Constraint # added constraint: constraint((T0305)S145.CB, (T0305)T154.CB) [> 2.7821 = 4.6369 < 6.0279] w=0.8260 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)T199.CB) [> 3.4816 = 5.8026 < 7.5434] w=0.8260 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)Y198.CB) [> 2.9929 = 4.9882 < 6.4847] w=0.8260 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)Q195.CB) [> 3.9264 = 6.5441 < 8.5073] w=0.8260 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)Y196.CB) [> 3.0981 = 5.1636 < 6.7126] w=0.8260 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)I171.CB) [> 4.1275 = 6.8792 < 8.9429] w=0.8260 to align # Constraint # added constraint: constraint((T0305)W111.CB, (T0305)V153.CB) [> 3.8199 = 6.3665 < 8.2764] w=0.8260 to align # Constraint # added constraint: constraint((T0305)W111.CB, (T0305)I151.CB) [> 2.8539 = 4.7566 < 6.1835] w=0.8260 to align # Constraint # added constraint: constraint((T0305)W111.CB, (T0305)Y148.CB) [> 3.2867 = 5.4779 < 7.1213] w=0.8260 to align # Constraint # added constraint: constraint((T0305)G240.CA, (T0305)V278.CB) [> 3.5323 = 5.8872 < 7.6534] w=0.8238 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)F110.CB) [> 4.3983 = 7.3304 < 9.5296] w=0.8230 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)R241.CB) [> 4.2139 = 7.0232 < 9.1301] w=0.8230 to align # Constraint # added constraint: constraint((T0305)P102.CB, (T0305)H234.CB) [> 4.5371 = 7.5619 < 9.8305] w=0.8200 to align # Constraint # added constraint: constraint((T0305)N53.CB, (T0305)Q100.CB) [> 4.3784 = 7.2973 < 9.4865] w=0.8164 to align # Constraint # added constraint: constraint((T0305)K52.CB, (T0305)N83.CB) [> 3.6756 = 6.1260 < 7.9638] w=0.8164 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)R274.CB) [> 4.0851 = 6.8085 < 8.8510] w=0.8161 to align # Constraint # added constraint: constraint((T0305)N53.CB, (T0305)N83.CB) [> 3.1774 = 5.2956 < 6.8843] w=0.8106 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)N83.CB) [> 4.1589 = 6.9316 < 9.0110] w=0.8106 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)Q100.CB) [> 2.8073 = 4.6788 < 6.0824] w=0.8106 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)G101.CA) [> 3.8184 = 6.3640 < 8.2733] w=0.8106 to align # Constraint # added constraint: constraint((T0305)Y55.CB, (T0305)A237.CB) [> 3.2357 = 5.3928 < 7.0106] w=0.8106 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)A84.CB) [> 3.7577 = 6.2629 < 8.1417] w=0.8088 to align # Constraint # added constraint: constraint((T0305)G89.CA, (T0305)S250.CB) [> 3.6124 = 6.0207 < 7.8269] w=0.8083 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)Y198.CB) [> 3.0110 = 5.0183 < 6.5238] w=0.8067 to align # Constraint # added constraint: constraint((T0305)F107.CB, (T0305)Y148.CB) [> 3.3791 = 5.6318 < 7.3214] w=0.8067 to align # Constraint # added constraint: constraint((T0305)I82.CB, (T0305)M113.CB) [> 3.4375 = 5.7291 < 7.4478] w=0.8066 to align # Constraint # added constraint: constraint((T0305)I82.CB, (T0305)F110.CB) [> 4.1781 = 6.9635 < 9.0526] w=0.8066 to align # Constraint # added constraint: constraint((T0305)I82.CB, (T0305)T99.CB) [> 4.0868 = 6.8114 < 8.8548] w=0.8066 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)I97.CB) [> 3.6518 = 6.0863 < 7.9122] w=0.8034 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)V233.CB) [> 4.5938 = 7.6564 < 9.9533] w=0.8032 to align # Constraint # added constraint: constraint((T0305)F107.CB, (T0305)Y139.CB) [> 2.7790 = 4.6317 < 6.0212] w=0.8010 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)A237.CB) [> 3.8892 = 6.4819 < 8.4265] w=0.7991 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)P230.CB) [> 4.1369 = 6.8948 < 8.9633] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)V193.CB) [> 3.7882 = 6.3136 < 8.2077] w=0.7971 to align # Constraint # added constraint: constraint((T0305)T119.CB, (T0305)V193.CB) [> 4.0255 = 6.7091 < 8.7218] w=0.7971 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)V193.CB) [> 3.2571 = 5.4284 < 7.0570] w=0.7971 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)I194.CB) [> 3.8199 = 6.3665 < 8.2764] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)V193.CB) [> 4.3233 = 7.2055 < 9.3671] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)I194.CB) [> 3.0142 = 5.0236 < 6.5307] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)V193.CB) [> 3.7694 = 6.2822 < 8.1669] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)I194.CB) [> 4.3705 = 7.2842 < 9.4695] w=0.7971 to align # Constraint # added constraint: constraint((T0305)R168.CB, (T0305)I194.CB) [> 3.6846 = 6.1411 < 7.9834] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I171.CB, (T0305)V193.CB) [> 3.3659 = 5.6098 < 7.2927] w=0.7971 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)F216.CB) [> 3.4299 = 5.7165 < 7.4315] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)Q100.CB) [> 4.3580 = 7.2634 < 9.4424] w=0.7971 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)V87.CB) [> 4.4656 = 7.4427 < 9.6756] w=0.7971 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)I82.CB) [> 3.4335 = 5.7224 < 7.4392] w=0.7971 to align # Constraint # added constraint: constraint((T0305)R112.CB, (T0305)I151.CB) [> 4.0254 = 6.7089 < 8.7216] w=0.7971 to align # Constraint # added constraint: constraint((T0305)W115.CB, (T0305)N173.CB) [> 3.8035 = 6.3392 < 8.2409] w=0.7971 to align # Constraint # added constraint: constraint((T0305)I151.CB, (T0305)N173.CB) [> 3.4301 = 5.7168 < 7.4319] w=0.7971 to align # Constraint # added constraint: constraint((T0305)L155.CB, (T0305)F169.CB) [> 3.4887 = 5.8144 < 7.5588] w=0.7971 to align # Constraint # added constraint: constraint((T0305)S157.CB, (T0305)R167.CB) [> 4.1356 = 6.8927 < 8.9605] w=0.7971 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)H197.CB) [> 4.5037 = 7.5062 < 9.7580] w=0.7971 to align # Constraint # added constraint: constraint((T0305)R172.CB, (T0305)E190.CB) [> 3.0529 = 5.0881 < 6.6146] w=0.7971 to align # Constraint # added constraint: constraint((T0305)V239.CB, (T0305)V278.CB) [> 4.5494 = 7.5823 < 9.8570] w=0.7953 to align # Constraint # added constraint: constraint((T0305)S44.CB, (T0305)L59.CB) [> 2.7729 = 4.6215 < 6.0079] w=0.7952 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)H234.CB) [> 4.4401 = 7.4002 < 9.6202] w=0.7938 to align # Constraint # added constraint: constraint((T0305)A210.CB, (T0305)F286.CB) [> 4.0616 = 6.7693 < 8.8001] w=0.7924 to align # Constraint # added constraint: constraint((T0305)A210.CB, (T0305)E293.CB) [> 3.0835 = 5.1392 < 6.6809] w=0.7914 to align # Constraint # added constraint: constraint((T0305)W115.CB, (T0305)I171.CB) [> 3.6527 = 6.0879 < 7.9142] w=0.7875 to align # Constraint # added constraint: constraint((T0305)I151.CB, (T0305)I171.CB) [> 3.6392 = 6.0654 < 7.8850] w=0.7875 to align # Constraint # added constraint: constraint((T0305)I151.CB, (T0305)R172.CB) [> 4.1594 = 6.9324 < 9.0121] w=0.7875 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)R172.CB) [> 2.5999 = 4.3332 < 5.6332] w=0.7875 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)F169.CB) [> 3.4928 = 5.8213 < 7.5677] w=0.7875 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)S170.CB) [> 4.3950 = 7.3250 < 9.5225] w=0.7875 to align # Constraint # added constraint: constraint((T0305)T154.CB, (T0305)F169.CB) [> 4.0607 = 6.7678 < 8.7982] w=0.7875 to align # Constraint # added constraint: constraint((T0305)T154.CB, (T0305)S170.CB) [> 2.8474 = 4.7457 < 6.1694] w=0.7875 to align # Constraint # added constraint: constraint((T0305)K156.CB, (T0305)R168.CB) [> 2.9000 = 4.8333 < 6.2832] w=0.7875 to align # Constraint # added constraint: constraint((T0305)T165.CB, (T0305)H197.CB) [> 2.8540 = 4.7567 < 6.1837] w=0.7875 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)Q195.CB) [> 4.2124 = 7.0207 < 9.1270] w=0.7875 to align # Constraint # added constraint: constraint((T0305)R167.CB, (T0305)Q195.CB) [> 2.5136 = 4.1893 < 5.4461] w=0.7875 to align # Constraint # added constraint: constraint((T0305)F169.CB, (T0305)V192.CB) [> 4.2750 = 7.1251 < 9.2626] w=0.7875 to align # Constraint # added constraint: constraint((T0305)I171.CB, (T0305)R191.CB) [> 3.0457 = 5.0762 < 6.5990] w=0.7875 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)L232.CB) [> 4.4834 = 7.4723 < 9.7140] w=0.7872 to align # Constraint # added constraint: constraint((T0305)H43.CB, (T0305)D62.CB) [> 3.4286 = 5.7144 < 7.4287] w=0.7856 to align # Constraint # added constraint: constraint((T0305)K52.CB, (T0305)I82.CB) [> 4.2145 = 7.0242 < 9.1314] w=0.7817 to align # Constraint # added constraint: constraint((T0305)K104.CB, (T0305)D137.CB) [> 3.1812 = 5.3021 < 6.8927] w=0.7817 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)L103.CB) [> 3.5923 = 5.9872 < 7.7834] w=0.7817 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)Q100.CB) [> 4.4214 = 7.3690 < 9.5797] w=0.7799 to align # Constraint # added constraint: constraint((T0305)L59.CB, (T0305)N83.CB) [> 4.1493 = 6.9155 < 8.9902] w=0.7799 to align # Constraint # added constraint: constraint((T0305)N85.CB, (T0305)T99.CB) [> 4.3902 = 7.3170 < 9.5120] w=0.7777 to align # Constraint # added constraint: constraint((T0305)P102.CB, (T0305)Y139.CB) [> 3.0257 = 5.0429 < 6.5557] w=0.7721 to align # Constraint # added constraint: constraint((T0305)I194.CB, (T0305)A223.CB) [> 3.2495 = 5.4158 < 7.0406] w=0.7702 to align # Constraint # added constraint: constraint((T0305)F169.CB, (T0305)V193.CB) [> 2.6856 = 4.4761 < 5.8189] w=0.7682 to align # Constraint # added constraint: constraint((T0305)R167.CB, (T0305)I194.CB) [> 4.3941 = 7.3236 < 9.5206] w=0.7682 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)I194.CB) [> 3.9413 = 6.5688 < 8.5395] w=0.7682 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)H197.CB) [> 3.6491 = 6.0818 < 7.9064] w=0.7682 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)Y196.CB) [> 3.6307 = 6.0511 < 7.8665] w=0.7682 to align # Constraint # added constraint: constraint((T0305)T242.CB, (T0305)L277.CB) [> 4.1072 = 6.8453 < 8.8989] w=0.7682 to align # Constraint # added constraint: constraint((T0305)T158.CB, (T0305)R168.CB) [> 4.2078 = 7.0131 < 9.1170] w=0.7682 to align # Constraint # added constraint: constraint((T0305)E108.CB, (T0305)I151.CB) [> 4.0140 = 6.6900 < 8.6969] w=0.7682 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)G238.CA) [> 4.4417 = 7.4028 < 9.6236] w=0.7682 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)H234.CB) [> 4.4693 = 7.4489 < 9.6835] w=0.7649 to align # Constraint # added constraint: constraint((T0305)W140.CB, (T0305)F169.CB) [> 3.8349 = 6.3915 < 8.3090] w=0.7625 to align # Constraint # added constraint: constraint((T0305)F110.CB, (T0305)Y139.CB) [> 3.6386 = 6.0644 < 7.8837] w=0.7625 to align # Constraint # added constraint: constraint((T0305)K156.CB, (T0305)S170.CB) [> 3.4961 = 5.8268 < 7.5749] w=0.7606 to align # Constraint # added constraint: constraint((T0305)L155.CB, (T0305)R167.CB) [> 3.5617 = 5.9362 < 7.7170] w=0.7586 to align # Constraint # added constraint: constraint((T0305)T158.CB, (T0305)R167.CB) [> 3.0959 = 5.1598 < 6.7077] w=0.7586 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)E190.CB) [> 3.6065 = 6.0108 < 7.8140] w=0.7586 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)R191.CB) [> 4.3475 = 7.2458 < 9.4195] w=0.7586 to align # Constraint # added constraint: constraint((T0305)L267.CB, (T0305)I287.CB) [> 4.4349 = 7.3915 < 9.6090] w=0.7570 to align # Constraint # added constraint: constraint((T0305)S44.CB, (T0305)A60.CB) [> 3.2123 = 5.3538 < 6.9599] w=0.7567 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)S236.CB) [> 4.1535 = 6.9224 < 8.9992] w=0.7529 to align # Constraint # added constraint: constraint((T0305)W115.CB, (T0305)I151.CB) [> 3.7653 = 6.2755 < 8.1581] w=0.7510 to align # Constraint # added constraint: constraint((T0305)I82.CB, (T0305)T106.CB) [> 3.9339 = 6.5564 < 8.5234] w=0.7510 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)Y96.CB) [> 2.7041 = 4.5068 < 5.8589] w=0.7508 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)I97.CB) [> 4.2623 = 7.1039 < 9.2351] w=0.7508 to align # Constraint # added constraint: constraint((T0305)N118.CB, (T0305)T228.CB) [> 3.6490 = 6.0817 < 7.9062] w=0.7491 to align # Constraint # added constraint: constraint((T0305)F169.CB, (T0305)I194.CB) [> 4.4743 = 7.4571 < 9.6943] w=0.7490 to align # Constraint # added constraint: constraint((T0305)C163.CB, (T0305)P212.CB) [> 2.8402 = 4.7336 < 6.1537] w=0.7490 to align # Constraint # added constraint: constraint((T0305)N85.CB, (T0305)I97.CB) [> 4.2447 = 7.0745 < 9.1968] w=0.7489 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)I97.CB) [> 3.5710 = 5.9517 < 7.7373] w=0.7489 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)L252.CB) [> 4.0328 = 6.7213 < 8.7377] w=0.7458 to align # Constraint # added constraint: constraint((T0305)K156.CB, (T0305)F169.CB) [> 4.1209 = 6.8682 < 8.9286] w=0.7414 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)R224.CB) [> 3.4106 = 5.6843 < 7.3896] w=0.7414 to align # Constraint # added constraint: constraint((T0305)R168.CB, (T0305)Q195.CB) [> 4.5228 = 7.5379 < 9.7993] w=0.7393 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)C136.CB) [> 2.7676 = 4.6126 < 5.9964] w=0.7336 to align # Constraint # added constraint: constraint((T0305)F107.CB, (T0305)D137.CB) [> 3.6570 = 6.0950 < 7.9236] w=0.7336 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)C136.CB) [> 3.3222 = 5.5370 < 7.1982] w=0.7336 to align # Constraint # added constraint: constraint((T0305)W140.CB, (T0305)L155.CB) [> 3.8872 = 6.4787 < 8.4223] w=0.7336 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)I171.CB) [> 4.2367 = 7.0612 < 9.1795] w=0.7318 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)T199.CB) [> 3.7008 = 6.1680 < 8.0183] w=0.7297 to align # Constraint # added constraint: constraint((T0305)R168.CB, (T0305)V192.CB) [> 3.8121 = 6.3536 < 8.2596] w=0.7297 to align # Constraint # added constraint: constraint((T0305)L155.CB, (T0305)R168.CB) [> 4.4846 = 7.4743 < 9.7166] w=0.7297 to align # Constraint # added constraint: constraint((T0305)W111.CB, (T0305)I171.CB) [> 3.8421 = 6.4036 < 8.3246] w=0.7297 to align # Constraint # added constraint: constraint((T0305)W140.CB, (T0305)R167.CB) [> 3.9751 = 6.6252 < 8.6128] w=0.7240 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)V193.CB) [> 4.4829 = 7.4715 < 9.7130] w=0.7221 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)T119.CB) [> 4.0611 = 6.7686 < 8.7991] w=0.7213 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)Q283.CB) [> 4.5996 = 7.6661 < 9.9659] w=0.7174 to align # Constraint # added constraint: constraint((T0305)W111.CB, (T0305)Y139.CB) [> 4.4153 = 7.3589 < 9.5666] w=0.7125 to align # Constraint # added constraint: constraint((T0305)T154.CB, (T0305)R172.CB) [> 4.4496 = 7.4160 < 9.6408] w=0.7125 to align # Constraint # added constraint: constraint((T0305)S220.CB, (T0305)D249.CB) [> 4.0708 = 6.7846 < 8.8200] w=0.7111 to align # Constraint # added constraint: constraint((T0305)W115.CB, (T0305)R191.CB) [> 3.9143 = 6.5239 < 8.4810] w=0.7105 to align # Constraint # added constraint: constraint((T0305)P102.CB, (T0305)D137.CB) [> 3.3067 = 5.5112 < 7.1645] w=0.7047 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)Q200.CB) [> 4.1045 = 6.8408 < 8.8930] w=0.7029 to align # Constraint # added constraint: constraint((T0305)C163.CB, (T0305)F216.CB) [> 3.9595 = 6.5991 < 8.5789] w=0.7029 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)I82.CB) [> 3.5545 = 5.9242 < 7.7015] w=0.7009 to align # Constraint # added constraint: constraint((T0305)T165.CB, (T0305)Y196.CB) [> 4.6490 = 7.7483 < 10.0728] w=0.7008 to align # Constraint # added constraint: constraint((T0305)N83.CB, (T0305)T106.CB) [> 4.5614 = 7.6024 < 9.8831] w=0.7008 to align # Constraint # added constraint: constraint((T0305)V206.CB, (T0305)I285.CB) [> 4.4902 = 7.4836 < 9.7287] w=0.6977 to align # Constraint # added constraint: constraint((T0305)Y55.CB, (T0305)Q100.CB) [> 4.3450 = 7.2417 < 9.4142] w=0.6951 to align # Constraint # added constraint: constraint((T0305)I246.CB, (T0305)L277.CB) [> 4.3660 = 7.2768 < 9.4598] w=0.6932 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)Y86.CB) [> 4.6645 = 7.7741 < 10.1063] w=0.6932 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)Y96.CB) [> 4.5356 = 7.5593 < 9.8271] w=0.6911 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)M113.CB) [> 3.7902 = 6.3170 < 8.2121] w=0.6897 to align # Constraint # added constraint: constraint((T0305)V213.CB, (T0305)Y245.CB) [> 4.4169 = 7.3614 < 9.5699] w=0.6861 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)E116.CB) [> 4.0373 = 6.7288 < 8.7474] w=0.6816 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)Q117.CB) [> 4.1565 = 6.9274 < 9.0056] w=0.6816 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)I82.CB) [> 4.5269 = 7.5448 < 9.8082] w=0.6816 to align # Constraint # added constraint: constraint((T0305)L214.CB, (T0305)I248.CB) [> 4.4283 = 7.3804 < 9.5946] w=0.6816 to align # Constraint # added constraint: constraint((T0305)S145.CB, (T0305)L155.CB) [> 4.2808 = 7.1346 < 9.2750] w=0.6816 to align # Constraint # added constraint: constraint((T0305)L214.CB, (T0305)A294.CB) [> 3.4367 = 5.7279 < 7.4463] w=0.6743 to align # Constraint # added constraint: constraint((T0305)P141.CB, (T0305)V153.CB) [> 3.6075 = 6.0124 < 7.8162] w=0.6740 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)W201.CB) [> 4.3314 = 7.2189 < 9.3846] w=0.6722 to align # Constraint # added constraint: constraint((T0305)K52.CB, (T0305)L103.CB) [> 4.3024 = 7.1706 < 9.3218] w=0.6720 to align # Constraint # added constraint: constraint((T0305)L252.CB, (T0305)A294.CB) [> 3.3094 = 5.5156 < 7.1703] w=0.6708 to align # Constraint # added constraint: constraint((T0305)E42.CB, (T0305)D62.CB) [> 3.4818 = 5.8030 < 7.5438] w=0.6643 to align # Constraint # added constraint: constraint((T0305)V206.CB, (T0305)T244.CB) [> 4.3852 = 7.3086 < 9.5012] w=0.6631 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)C235.CB) [> 4.5303 = 7.5505 < 9.8156] w=0.6591 to align # Constraint # added constraint: constraint((T0305)Y196.CB, (T0305)A223.CB) [> 4.2593 = 7.0989 < 9.2286] w=0.6547 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)Y81.CB) [> 4.2341 = 7.0568 < 9.1738] w=0.6527 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)D80.CB) [> 2.9785 = 4.9641 < 6.4533] w=0.6527 to align # Constraint # added constraint: constraint((T0305)Y164.CB, (T0305)R219.CB) [> 4.3673 = 7.2789 < 9.4625] w=0.6527 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)R191.CB) [> 4.2478 = 7.0797 < 9.2036] w=0.6451 to align # Constraint # added constraint: constraint((T0305)S157.CB, (T0305)R168.CB) [> 2.9172 = 4.8620 < 6.3206] w=0.6451 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)Y276.CB) [> 3.4360 = 5.7267 < 7.4447] w=0.6435 to align # Constraint # added constraint: constraint((T0305)K52.CB, (T0305)S105.CB) [> 4.2231 = 7.0385 < 9.1501] w=0.6373 to align # Constraint # added constraint: constraint((T0305)P141.CB, (T0305)T154.CB) [> 3.9973 = 6.6621 < 8.6608] w=0.6355 to align # Constraint # added constraint: constraint((T0305)P141.CB, (T0305)L155.CB) [> 2.9501 = 4.9168 < 6.3919] w=0.6355 to align # Constraint # added constraint: constraint((T0305)I248.CB, (T0305)L291.CB) [> 3.7819 = 6.3031 < 8.1941] w=0.6355 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)N83.CB) [> 4.6044 = 7.6740 < 9.9762] w=0.6354 to align # Constraint # added constraint: constraint((T0305)I255.CB, (T0305)I295.CB) [> 3.7872 = 6.3120 < 8.2056] w=0.6259 to align # Constraint # added constraint: constraint((T0305)N49.CB, (T0305)Y81.CB) [> 2.8875 = 4.8125 < 6.2562] w=0.6259 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)D80.CB) [> 2.7210 = 4.5350 < 5.8955] w=0.6238 to align # Constraint # added constraint: constraint((T0305)A162.CB, (T0305)Q200.CB) [> 4.4910 = 7.4850 < 9.7304] w=0.6181 to align # Constraint # added constraint: constraint((T0305)N150.CB, (T0305)N173.CB) [> 3.5417 = 5.9029 < 7.6737] w=0.6142 to align # Constraint # added constraint: constraint((T0305)N144.CB, (T0305)L155.CB) [> 3.8154 = 6.3590 < 8.2668] w=0.6142 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)C136.CB) [> 4.4526 = 7.4211 < 9.6474] w=0.6066 to align # Constraint # added constraint: constraint((T0305)L252.CB, (T0305)L291.CB) [> 4.0266 = 6.7111 < 8.7244] w=0.6066 to align # Constraint # added constraint: constraint((T0305)I255.CB, (T0305)L291.CB) [> 4.3814 = 7.3023 < 9.4930] w=0.6066 to align # Constraint # added constraint: constraint((T0305)H43.CB, (T0305)A60.CB) [> 4.3758 = 7.2929 < 9.4808] w=0.6066 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)E116.CB) [> 3.4475 = 5.7458 < 7.4695] w=0.6046 to align # Constraint # added constraint: constraint((T0305)R172.CB, (T0305)R191.CB) [> 4.5779 = 7.6298 < 9.9187] w=0.6046 to align # Constraint # added constraint: constraint((T0305)R172.CB, (T0305)N189.CB) [> 4.1086 = 6.8476 < 8.9019] w=0.5950 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)S79.CB) [> 4.2840 = 7.1401 < 9.2821] w=0.5950 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)Y81.CB) [> 4.4159 = 7.3599 < 9.5679] w=0.5950 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)Y198.CB) [> 4.6479 = 7.7465 < 10.0704] w=0.5946 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)R219.CB) [> 4.2705 = 7.1176 < 9.2528] w=0.5873 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)Q138.CB) [> 3.4564 = 5.7606 < 7.4888] w=0.5777 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)K135.CB) [> 3.0348 = 5.0580 < 6.5754] w=0.5777 to align # Constraint # added constraint: constraint((T0305)P102.CB, (T0305)C136.CB) [> 3.9248 = 6.5413 < 8.5036] w=0.5777 to align # Constraint # added constraint: constraint((T0305)S44.CB, (T0305)Y81.CB) [> 4.2304 = 7.0507 < 9.1660] w=0.5777 to align # Constraint # added constraint: constraint((T0305)R168.CB, (T0305)V193.CB) [> 4.5548 = 7.5913 < 9.8687] w=0.5777 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)I82.CB) [> 4.6602 = 7.7670 < 10.0970] w=0.5777 to align # Constraint # added constraint: constraint((T0305)A41.CB, (T0305)L59.CB) [> 2.7125 = 4.5208 < 5.8771] w=0.5681 to align # Constraint # added constraint: constraint((T0305)G89.CA, (T0305)H269.CB) [> 3.7598 = 6.2663 < 8.1462] w=0.5677 to align # Constraint # added constraint: constraint((T0305)N173.CB, (T0305)N189.CB) [> 3.2071 = 5.3452 < 6.9488] w=0.5661 to align # Constraint # added constraint: constraint((T0305)V213.CB, (T0305)T244.CB) [> 4.3821 = 7.3034 < 9.4945] w=0.5613 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)D249.CB) [> 4.3962 = 7.3270 < 9.5251] w=0.5510 to align # Constraint # added constraint: constraint((T0305)C136.CB, (T0305)H234.CB) [> 4.5019 = 7.5032 < 9.7542] w=0.5488 to align # Constraint # added constraint: constraint((T0305)N45.CB, (T0305)L59.CB) [> 4.0461 = 6.7436 < 8.7666] w=0.5488 to align # Constraint # added constraint: constraint((T0305)H43.CB, (T0305)Y81.CB) [> 3.3979 = 5.6631 < 7.3621] w=0.5488 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)L277.CB) [> 4.3658 = 7.2764 < 9.4593] w=0.5485 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)G229.CA) [> 4.1631 = 6.9384 < 9.0200] w=0.5454 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)Y81.CB) [> 4.5032 = 7.5054 < 9.7570] w=0.5372 to align # Constraint # added constraint: constraint((T0305)V213.CB, (T0305)F286.CB) [> 4.1812 = 6.9687 < 9.0594] w=0.5324 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)V231.CB) [> 4.2900 = 7.1501 < 9.2951] w=0.5261 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)A95.CB) [> 4.0009 = 6.6682 < 8.6687] w=0.5198 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)L232.CB) [> 4.6193 = 7.6989 < 10.0086] w=0.5178 to align # Constraint # added constraint: constraint((T0305)F27.CB, (T0305)Y284.CB) [> 3.1465 = 5.2442 < 6.8175] w=0.5103 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)D80.CB) [> 4.2176 = 7.0294 < 9.1382] w=0.5007 to align # Constraint # added constraint: constraint((T0305)C163.CB, (T0305)T215.CB) [> 3.8187 = 6.3644 < 8.2738] w=0.5007 to align # Constraint # added constraint: constraint((T0305)V263.CB, (T0305)Y284.CB) [> 4.6124 = 7.6873 < 9.9935] w=0.4948 to align # Constraint # added constraint: constraint((T0305)A41.CB, (T0305)Y61.CB) [> 3.4361 = 5.7269 < 7.4449] w=0.4911 to align # Constraint # added constraint: constraint((T0305)A41.CB, (T0305)A60.CB) [> 3.8666 = 6.4443 < 8.3776] w=0.4911 to align # Constraint # added constraint: constraint((T0305)D203.CB, (T0305)R241.CB) [> 4.3661 = 7.2769 < 9.4600] w=0.4898 to align # Constraint # added constraint: constraint((T0305)E130.CB, (T0305)S236.CB) [> 4.1344 = 6.8907 < 8.9580] w=0.4869 to align # Constraint # added constraint: constraint((T0305)A210.CB, (T0305)A294.CB) [> 4.5810 = 7.6351 < 9.9256] w=0.4814 to align # Constraint # added constraint: constraint((T0305)S24.CB, (T0305)E281.CB) [> 3.3776 = 5.6294 < 7.3182] w=0.4814 to align # Constraint # added constraint: constraint((T0305)F216.CB, (T0305)Y245.CB) [> 3.9067 = 6.5112 < 8.4645] w=0.4801 to align # Constraint # added constraint: constraint((T0305)D26.CB, (T0305)L264.CB) [> 3.9263 = 6.5438 < 8.5070] w=0.4718 to align # Constraint # added constraint: constraint((T0305)S250.CB, (T0305)I270.CB) [> 4.3820 = 7.3033 < 9.4943] w=0.4632 to align # Constraint # added constraint: constraint((T0305)Y198.CB, (T0305)R241.CB) [> 4.7132 = 7.8553 < 10.2118] w=0.4622 to align # Constraint # added constraint: constraint((T0305)V30.CB, (T0305)K268.CB) [> 3.7318 = 6.2197 < 8.0856] w=0.4622 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)T242.CB) [> 4.6469 = 7.7448 < 10.0683] w=0.4565 to align # Constraint # added constraint: constraint((T0305)T34.CB, (T0305)R271.CB) [> 3.5681 = 5.9469 < 7.7309] w=0.4525 to align # Constraint # added constraint: constraint((T0305)Y198.CB, (T0305)V213.CB) [> 4.2863 = 7.1438 < 9.2870] w=0.4333 to align # Constraint # added constraint: constraint((T0305)I39.CB, (T0305)Y61.CB) [> 2.5272 = 4.2119 < 5.4755] w=0.4333 to align # Constraint # added constraint: constraint((T0305)V30.CB, (T0305)L264.CB) [> 3.7811 = 6.3019 < 8.1925] w=0.4333 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)C136.CB) [> 4.5880 = 7.6468 < 9.9408] w=0.4333 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)G238.CA) [> 4.6521 = 7.7535 < 10.0795] w=0.4332 to align # Constraint # added constraint: constraint((T0305)V30.CB, (T0305)L267.CB) [> 3.7070 = 6.1784 < 8.0319] w=0.4236 to align # Constraint # added constraint: constraint((T0305)N173.CB, (T0305)E190.CB) [> 4.5729 = 7.6215 < 9.9079] w=0.4236 to align # Constraint # added constraint: constraint((T0305)N118.CB, (T0305)R191.CB) [> 4.1427 = 6.9045 < 8.9759] w=0.4216 to align # Constraint # added constraint: constraint((T0305)D88.CB, (T0305)H269.CB) [> 3.9012 = 6.5019 < 8.4525] w=0.4216 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)A290.CB) [> 4.6875 = 7.8125 < 10.1562] w=0.4189 to align # Constraint # added constraint: constraint((T0305)M204.CB, (T0305)T280.CB) [> 3.5794 = 5.9656 < 7.7553] w=0.4181 to align # Constraint # added constraint: constraint((T0305)P207.CB, (T0305)F216.CB) [> 4.4542 = 7.4236 < 9.6507] w=0.4159 to align # Constraint # added constraint: constraint((T0305)I39.CB, (T0305)D62.CB) [> 4.1866 = 6.9777 < 9.0710] w=0.4140 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)N173.CB) [> 4.3003 = 7.1671 < 9.3172] w=0.4140 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)H288.CB) [> 3.3497 = 5.5829 < 7.2577] w=0.4044 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)D203.CB) [> 4.4661 = 7.4435 < 9.6765] w=0.4006 to align # Constraint # added constraint: constraint((T0305)F23.CB, (T0305)I285.CB) [> 3.1944 = 5.3239 < 6.9211] w=0.3948 to align # Constraint # added constraint: constraint((T0305)F23.CB, (T0305)Y284.CB) [> 3.9283 = 6.5472 < 8.5114] w=0.3948 to align # Constraint # added constraint: constraint((T0305)Y90.CB, (T0305)S250.CB) [> 3.2788 = 5.4646 < 7.1040] w=0.3945 to align # Constraint # added constraint: constraint((T0305)I248.CB, (T0305)A294.CB) [> 4.0956 = 6.8260 < 8.8738] w=0.3894 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)R112.CB) [> 4.5534 = 7.5890 < 9.8656] w=0.3851 to align # Constraint # added constraint: constraint((T0305)I39.CB, (T0305)N275.CB) [> 4.3138 = 7.1897 < 9.3466] w=0.3851 to align # Constraint # added constraint: constraint((T0305)T154.CB, (T0305)I171.CB) [> 4.6521 = 7.7535 < 10.0796] w=0.3851 to align # Constraint # added constraint: constraint((T0305)N173.CB, (T0305)G186.CA) [> 3.2806 = 5.4677 < 7.1080] w=0.3851 to align # Constraint # added constraint: constraint((T0305)K92.CB, (T0305)Q253.CB) [> 3.1697 = 5.2829 < 6.8677] w=0.3850 to align # Constraint # added constraint: constraint((T0305)Q100.CB, (T0305)C235.CB) [> 4.4966 = 7.4943 < 9.7426] w=0.3830 to align # Constraint # added constraint: constraint((T0305)C136.CB, (T0305)C235.CB) [> 4.6076 = 7.6793 < 9.9831] w=0.3755 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)L292.CB) [> 3.5043 = 5.8405 < 7.5926] w=0.3755 to align # Constraint # added constraint: constraint((T0305)M204.CB, (T0305)Q279.CB) [> 3.8905 = 6.4841 < 8.4294] w=0.3751 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)T242.CB) [> 4.7055 = 7.8426 < 10.1953] w=0.3665 to align # Constraint # added constraint: constraint((T0305)F23.CB, (T0305)E281.CB) [> 3.2877 = 5.4796 < 7.1234] w=0.3659 to align # Constraint # added constraint: constraint((T0305)F8.CB, (T0305)H288.CB) [> 4.4134 = 7.3556 < 9.5623] w=0.3659 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)F216.CB) [> 4.4523 = 7.4205 < 9.6466] w=0.3623 to align # Constraint # added constraint: constraint((T0305)K92.CB, (T0305)S250.CB) [> 2.8113 = 4.6855 < 6.0912] w=0.3572 to align # Constraint # added constraint: constraint((T0305)D26.CB, (T0305)Y284.CB) [> 4.3172 = 7.1954 < 9.3540] w=0.3563 to align # Constraint # added constraint: constraint((T0305)I39.CB, (T0305)H63.CB) [> 3.7619 = 6.2699 < 8.1508] w=0.3563 to align # Constraint # added constraint: constraint((T0305)A162.CB, (T0305)P212.CB) [> 3.9851 = 6.6419 < 8.6344] w=0.3562 to align # Constraint # added constraint: constraint((T0305)N91.CB, (T0305)Q254.CB) [> 4.1209 = 6.8682 < 8.9287] w=0.3466 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)A290.CB) [> 4.6119 = 7.6865 < 9.9924] w=0.3466 to align # Constraint # added constraint: constraint((T0305)W201.CB, (T0305)V213.CB) [> 4.6105 = 7.6841 < 9.9893] w=0.3466 to align # Constraint # added constraint: constraint((T0305)K135.CB, (T0305)C235.CB) [> 4.3776 = 7.2959 < 9.4847] w=0.3466 to align # Constraint # added constraint: constraint((T0305)T40.CB, (T0305)H63.CB) [> 4.5322 = 7.5537 < 9.8199] w=0.3466 to align # Constraint # added constraint: constraint((T0305)Y139.CB, (T0305)Y148.CB) [> 4.4272 = 7.3787 < 9.5923] w=0.3466 to align # Constraint # added constraint: constraint((T0305)R167.CB, (T0305)Y196.CB) [> 4.6776 = 7.7959 < 10.1347] w=0.3446 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)A294.CB) [> 4.2420 = 7.0700 < 9.1910] w=0.3399 to align # Constraint # added constraint: constraint((T0305)A35.CB, (T0305)K268.CB) [> 4.1536 = 6.9227 < 8.9995] w=0.3370 to align # Constraint # added constraint: constraint((T0305)V9.CB, (T0305)L292.CB) [> 3.5057 = 5.8429 < 7.5958] w=0.3370 to align # Constraint # added constraint: constraint((T0305)I255.CB, (T0305)A294.CB) [> 4.0739 = 6.7899 < 8.8268] w=0.3370 to align # Constraint # added constraint: constraint((T0305)A35.CB, (T0305)N275.CB) [> 4.0927 = 6.8212 < 8.8675] w=0.3370 to align # Constraint # added constraint: constraint((T0305)M251.CB, (T0305)N262.CB) [> 4.4326 = 7.3876 < 9.6039] w=0.3289 to align # Constraint # added constraint: constraint((T0305)D26.CB, (T0305)E281.CB) [> 3.8080 = 6.3466 < 8.2506] w=0.3274 to align # Constraint # added constraint: constraint((T0305)Y16.CB, (T0305)I285.CB) [> 4.5164 = 7.5273 < 9.7855] w=0.3274 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)D88.CB) [> 4.3920 = 7.3200 < 9.5160] w=0.3254 to align # Constraint # added constraint: constraint((T0305)G120.CA, (T0305)P230.CB) [> 4.0660 = 6.7767 < 8.8097] w=0.3200 to align # Constraint # added constraint: constraint((T0305)N49.CB, (T0305)S79.CB) [> 4.3866 = 7.3110 < 9.5043] w=0.3177 to align # Constraint # added constraint: constraint((T0305)K156.CB, (T0305)V192.CB) [> 4.6490 = 7.7482 < 10.0727] w=0.3177 to align # Constraint # added constraint: constraint((T0305)C33.CB, (T0305)K268.CB) [> 3.6844 = 6.1406 < 7.9828] w=0.3177 to align # Constraint # added constraint: constraint((T0305)A35.CB, (T0305)R271.CB) [> 3.3880 = 5.6467 < 7.3407] w=0.3177 to align # Constraint # added constraint: constraint((T0305)G89.CA, (T0305)I246.CB) [> 4.4497 = 7.4162 < 9.6411] w=0.3136 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)Q200.CB) [> 3.5289 = 5.8814 < 7.6458] w=0.3088 to align # Constraint # added constraint: constraint((T0305)V30.CB, (T0305)Y284.CB) [> 4.3026 = 7.1711 < 9.3224] w=0.3081 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)Q195.CB) [> 4.7030 = 7.8383 < 10.1897] w=0.3061 to align # Constraint # added constraint: constraint((T0305)K94.CB, (T0305)P230.CB) [> 3.5214 = 5.8690 < 7.6296] w=0.3027 to align # Constraint # added constraint: constraint((T0305)F266.CB, (T0305)I287.CB) [> 4.3081 = 7.1802 < 9.3343] w=0.2949 to align # Constraint # added constraint: constraint((T0305)S221.CB, (T0305)L252.CB) [> 4.1389 = 6.8982 < 8.9677] w=0.2895 to align # Constraint # added constraint: constraint((T0305)M37.CB, (T0305)Y61.CB) [> 3.5433 = 5.9055 < 7.6771] w=0.2889 to align # Constraint # added constraint: constraint((T0305)G101.CA, (T0305)M124.CB) [> 4.7327 = 7.8879 < 10.2542] w=0.2888 to align # Constraint # added constraint: constraint((T0305)F27.CB, (T0305)V278.CB) [> 4.6046 = 7.6743 < 9.9766] w=0.2888 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)P202.CB) [> 3.9837 = 6.6396 < 8.6314] w=0.2830 to align # Constraint # added constraint: constraint((T0305)Y90.CB, (T0305)Q254.CB) [> 3.3814 = 5.6357 < 7.3264] w=0.2792 to align # Constraint # added constraint: constraint((T0305)P207.CB, (T0305)T244.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.2784 to align # Constraint # added constraint: constraint((T0305)L252.CB, (T0305)I295.CB) [> 4.2831 = 7.1385 < 9.2801] w=0.2776 to align # Constraint # added constraint: constraint((T0305)Y81.CB, (T0305)D109.CB) [> 4.6262 = 7.7103 < 10.0233] w=0.2695 to align # Constraint # added constraint: constraint((T0305)S220.CB, (T0305)Y245.CB) [> 4.2593 = 7.0989 < 9.2286] w=0.2672 to align # Constraint # added constraint: constraint((T0305)L15.CB, (T0305)H288.CB) [> 4.1413 = 6.9022 < 8.9729] w=0.2600 to align # Constraint # added constraint: constraint((T0305)N150.CB, (T0305)G186.CA) [> 3.5419 = 5.9031 < 7.6740] w=0.2599 to align # Constraint # added constraint: constraint((T0305)G89.CA, (T0305)F266.CB) [> 3.9674 = 6.6123 < 8.5959] w=0.2579 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)R191.CB) [> 4.4493 = 7.4154 < 9.6400] w=0.2579 to align # Constraint # added constraint: constraint((T0305)V231.CB, (T0305)D249.CB) [> 4.4026 = 7.3377 < 9.5390] w=0.2429 to align # Constraint # added constraint: constraint((T0305)T34.CB, (T0305)K268.CB) [> 3.9874 = 6.6457 < 8.6394] w=0.2407 to align # Constraint # added constraint: constraint((T0305)K159.CB, (T0305)R168.CB) [> 4.2802 = 7.1336 < 9.2737] w=0.2407 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)T244.CB) [> 4.6123 = 7.6871 < 9.9932] w=0.2393 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)F169.CB) [> 4.5237 = 7.5395 < 9.8014] w=0.2387 to align # Constraint # added constraint: constraint((T0305)Y198.CB, (T0305)P207.CB) [> 4.6754 = 7.7924 < 10.1301] w=0.2311 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)D289.CB) [> 4.2880 = 7.1466 < 9.2906] w=0.2311 to align # Constraint # added constraint: constraint((T0305)Y55.CB, (T0305)S236.CB) [> 4.6610 = 7.7683 < 10.0988] w=0.2311 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)H197.CB) [> 4.6366 = 7.7277 < 10.0460] w=0.2311 to align # Constraint # added constraint: constraint((T0305)F110.CB, (T0305)Y148.CB) [> 4.6380 = 7.7299 < 10.0489] w=0.2311 to align # Constraint # added constraint: constraint((T0305)C163.CB, (T0305)V213.CB) [> 4.4584 = 7.4307 < 9.6599] w=0.2311 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)L277.CB) [> 4.6255 = 7.7092 < 10.0220] w=0.2311 to align # Constraint # added constraint: constraint((T0305)E29.CB, (T0305)L264.CB) [> 4.4128 = 7.3547 < 9.5611] w=0.2215 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)I285.CB) [> 4.6404 = 7.7340 < 10.0541] w=0.2215 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)T174.CB) [> 3.1957 = 5.3261 < 6.9239] w=0.2214 to align # Constraint # added constraint: constraint((T0305)Y139.CB, (T0305)V153.CB) [> 4.5386 = 7.5643 < 9.8336] w=0.2137 to align # Constraint # added constraint: constraint((T0305)I151.CB, (T0305)T174.CB) [> 3.9747 = 6.6245 < 8.6118] w=0.2118 to align # Constraint # added constraint: constraint((T0305)Y90.CB, (T0305)V261.CB) [> 3.3865 = 5.6441 < 7.3374] w=0.2096 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)P230.CB) [> 4.6910 = 7.8183 < 10.1638] w=0.2022 to align # Constraint # added constraint: constraint((T0305)F8.CB, (T0305)V261.CB) [> 3.8563 = 6.4272 < 8.3554] w=0.2022 to align # Constraint # added constraint: constraint((T0305)F8.CB, (T0305)L291.CB) [> 3.9351 = 6.5585 < 8.5260] w=0.2022 to align # Constraint # added constraint: constraint((T0305)F8.CB, (T0305)L292.CB) [> 3.4422 = 5.7369 < 7.4580] w=0.2022 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)R274.CB) [> 4.4580 = 7.4300 < 9.6590] w=0.1910 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)Y198.CB) [> 4.4751 = 7.4585 < 9.6961] w=0.1905 to align # Constraint # added constraint: constraint((T0305)K94.CB, (T0305)V231.CB) [> 4.4704 = 7.4506 < 9.6858] w=0.1835 to align # Constraint # added constraint: constraint((T0305)M5.CB, (T0305)I295.CB) [> 3.3821 = 5.6368 < 7.3278] w=0.1829 to align # Constraint # added constraint: constraint((T0305)F8.CB, (T0305)V263.CB) [> 3.8866 = 6.4776 < 8.4209] w=0.1829 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)Q279.CB) [> 4.7337 = 7.8895 < 10.2563] w=0.1733 to align # Constraint # added constraint: constraint((T0305)I39.CB, (T0305)S64.CB) [> 4.6476 = 7.7460 < 10.0698] w=0.1733 to align # Constraint # added constraint: constraint((T0305)E147.CB, (T0305)T174.CB) [> 4.2501 = 7.0835 < 9.2086] w=0.1733 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)S170.CB) [> 4.6895 = 7.8159 < 10.1607] w=0.1733 to align # Constraint # added constraint: constraint((T0305)W201.CB, (T0305)C235.CB) [> 4.7227 = 7.8712 < 10.2325] w=0.1679 to align # Constraint # added constraint: constraint((T0305)R218.CB, (T0305)L252.CB) [> 4.2812 = 7.1353 < 9.2759] w=0.1647 to align # Constraint # added constraint: constraint((T0305)M5.CB, (T0305)H288.CB) [> 3.8316 = 6.3860 < 8.3019] w=0.1637 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)G243.CA) [> 4.6503 = 7.7506 < 10.0757] w=0.1617 to align # Constraint # added constraint: constraint((T0305)L155.CB, (T0305)S170.CB) [> 4.4897 = 7.4828 < 9.7276] w=0.1617 to align # Constraint # added constraint: constraint((T0305)M37.CB, (T0305)K268.CB) [> 4.6260 = 7.7101 < 10.0231] w=0.1541 to align # Constraint # added constraint: constraint((T0305)I82.CB, (T0305)P102.CB) [> 4.3919 = 7.3198 < 9.5157] w=0.1539 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)R274.CB) [> 4.6273 = 7.7122 < 10.0258] w=0.1525 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)V233.CB) [> 4.6966 = 7.8277 < 10.1760] w=0.1523 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)Q200.CB) [> 3.6774 = 6.1289 < 7.9676] w=0.1505 to align # Constraint # added constraint: constraint((T0305)D36.CB, (T0305)K268.CB) [> 4.0572 = 6.7620 < 8.7906] w=0.1444 to align # Constraint # added constraint: constraint((T0305)M5.CB, (T0305)V261.CB) [> 3.9925 = 6.6542 < 8.6505] w=0.1444 to align # Constraint # added constraint: constraint((T0305)V87.CB, (T0305)V233.CB) [> 4.7300 = 7.8834 < 10.2484] w=0.1444 to align # Constraint # added constraint: constraint((T0305)V261.CB, (T0305)I295.CB) [> 4.5756 = 7.6260 < 9.9138] w=0.1444 to align # Constraint # added constraint: constraint((T0305)Y86.CB, (T0305)E227.CB) [> 4.0479 = 6.7465 < 8.7704] w=0.1444 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)A84.CB) [> 3.8078 = 6.3463 < 8.2501] w=0.1444 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)D109.CB) [> 3.4488 = 5.7480 < 7.4724] w=0.1444 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)T199.CB) [> 4.3464 = 7.2441 < 9.4173] w=0.1422 to align # Constraint # added constraint: constraint((T0305)M37.CB, (T0305)H63.CB) [> 3.6034 = 6.0057 < 7.8074] w=0.1348 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)F169.CB) [> 4.5845 = 7.6408 < 9.9330] w=0.1348 to align # Constraint # added constraint: constraint((T0305)G89.CA, (T0305)G265.CA) [> 4.7059 = 7.8431 < 10.1960] w=0.1328 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)H197.CB) [> 3.6160 = 6.0267 < 7.8347] w=0.1263 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)F23.CB) [> 3.7766 = 6.2944 < 8.1827] w=0.1252 to align # Constraint # added constraint: constraint((T0305)V9.CB, (T0305)I295.CB) [> 3.9964 = 6.6606 < 8.6588] w=0.1252 to align # Constraint # added constraint: constraint((T0305)P70.CB, (T0305)S79.CB) [> 3.2017 = 5.3361 < 6.9370] w=0.1252 to align # Constraint # added constraint: constraint((T0305)P70.CB, (T0305)D80.CB) [> 2.8626 = 4.7710 < 6.2023] w=0.1252 to align # Constraint # added constraint: constraint((T0305)F110.CB, (T0305)L232.CB) [> 4.6343 = 7.7238 < 10.0410] w=0.1186 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)H234.CB) [> 4.7020 = 7.8366 < 10.1876] w=0.1155 to align # Constraint # added constraint: constraint((T0305)D88.CB, (T0305)S250.CB) [> 4.6449 = 7.7415 < 10.0640] w=0.1155 to align # Constraint # added constraint: constraint((T0305)F107.CB, (T0305)G149.CA) [> 4.6761 = 7.7934 < 10.1314] w=0.1155 to align # Constraint # added constraint: constraint((T0305)I114.CB, (T0305)I151.CB) [> 4.6590 = 7.7650 < 10.0945] w=0.1155 to align # Constraint # added constraint: constraint((T0305)V247.CB, (T0305)A290.CB) [> 4.6129 = 7.6882 < 9.9946] w=0.1155 to align # Constraint # added constraint: constraint((T0305)V9.CB, (T0305)L296.CB) [> 4.3393 = 7.2322 < 9.4019] w=0.1059 to align # Constraint # added constraint: constraint((T0305)K94.CB, (T0305)G229.CA) [> 4.2878 = 7.1464 < 9.2903] w=0.1059 to align # Constraint # added constraint: constraint((T0305)I97.CB, (T0305)I114.CB) [> 4.4583 = 7.4305 < 9.6596] w=0.1056 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)S79.CB) [> 3.1704 = 5.2840 < 6.8692] w=0.1039 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)G229.CA) [> 4.2545 = 7.0908 < 9.2180] w=0.1022 to align # Constraint # added constraint: constraint((T0305)P207.CB, (T0305)Y245.CB) [> 4.2314 = 7.0523 < 9.1680] w=0.0971 to align # Constraint # added constraint: constraint((T0305)G13.CA, (T0305)F23.CB) [> 3.8770 = 6.4616 < 8.4001] w=0.0963 to align # Constraint # added constraint: constraint((T0305)K94.CB, (T0305)I246.CB) [> 4.5884 = 7.6473 < 9.9414] w=0.0963 to align # Constraint # added constraint: constraint((T0305)A162.CB, (T0305)L211.CB) [> 4.5019 = 7.5033 < 9.7542] w=0.0963 to align # Constraint # added constraint: constraint((T0305)F27.CB, (T0305)L264.CB) [> 4.2867 = 7.1444 < 9.2878] w=0.0963 to align # Constraint # added constraint: constraint((T0305)L103.CB, (T0305)K135.CB) [> 3.9980 = 6.6633 < 8.6623] w=0.0963 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)P230.CB) [> 4.4462 = 7.4104 < 9.6335] w=0.0923 to align # Constraint # added constraint: constraint((T0305)V129.CB, (T0305)S236.CB) [> 3.8052 = 6.3419 < 8.2445] w=0.0911 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)H78.CB) [> 3.9855 = 6.6426 < 8.6354] w=0.0885 to align # Constraint # added constraint: constraint((T0305)N57.CB, (T0305)Y276.CB) [> 4.4011 = 7.3351 < 9.5356] w=0.0867 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)N83.CB) [> 4.7479 = 7.9132 < 10.2871] w=0.0867 to align # Constraint # added constraint: constraint((T0305)I125.CB, (T0305)F216.CB) [> 4.6990 = 7.8317 < 10.1812] w=0.0867 to align # Constraint # added constraint: constraint((T0305)Y198.CB, (T0305)Y245.CB) [> 4.6744 = 7.7908 < 10.1280] w=0.0867 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)V193.CB) [> 4.6424 = 7.7374 < 10.0586] w=0.0867 to align # Constraint # added constraint: constraint((T0305)A60.CB, (T0305)Y81.CB) [> 4.7127 = 7.8545 < 10.2108] w=0.0867 to align # Constraint # added constraint: constraint((T0305)Q31.CB, (T0305)K268.CB) [> 4.3124 = 7.1873 < 9.3435] w=0.0867 to align # Constraint # added constraint: constraint((T0305)K104.CB, (T0305)Y139.CB) [> 3.9446 = 6.5744 < 8.5467] w=0.0866 to align # Constraint # added constraint: constraint((T0305)I12.CB, (T0305)K268.CB) [> 4.5515 = 7.5859 < 9.8617] w=0.0866 to align # Constraint # added constraint: constraint((T0305)L15.CB, (T0305)K268.CB) [> 3.7145 = 6.1908 < 8.0481] w=0.0866 to align # Constraint # added constraint: constraint((T0305)Y16.CB, (T0305)Y276.CB) [> 2.3941 = 3.9901 < 5.1871] w=0.0866 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)A98.CB) [> 3.6478 = 6.0797 < 7.9036] w=0.0860 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)I97.CB) [> 3.2829 = 5.4715 < 7.1130] w=0.0860 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)R224.CB) [> 4.3252 = 7.2086 < 9.3712] w=0.0850 to align # Constraint # added constraint: constraint((T0305)L103.CB, (T0305)V129.CB) [> 4.0684 = 6.7807 < 8.8149] w=0.0831 to align # Constraint # added constraint: constraint((T0305)S4.CB, (T0305)T260.CB) [> 3.3521 = 5.5868 < 7.2628] w=0.0770 to align # Constraint # added constraint: constraint((T0305)M5.CB, (T0305)I255.CB) [> 3.5091 = 5.8485 < 7.6031] w=0.0770 to align # Constraint # added constraint: constraint((T0305)A41.CB, (T0305)N57.CB) [> 4.1158 = 6.8597 < 8.9176] w=0.0770 to align # Constraint # added constraint: constraint((T0305)L15.CB, (T0305)C33.CB) [> 3.7812 = 6.3020 < 8.1925] w=0.0770 to align # Constraint # added constraint: constraint((T0305)E208.CB, (T0305)T244.CB) [> 3.8762 = 6.4603 < 8.3984] w=0.0769 to align # Constraint # added constraint: constraint((T0305)E208.CB, (T0305)Y245.CB) [> 4.0127 = 6.6879 < 8.6943] w=0.0769 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)I246.CB) [> 3.8106 = 6.3510 < 8.2564] w=0.0750 to align # Constraint # added constraint: constraint((T0305)L155.CB, (T0305)Q195.CB) [> 3.9974 = 6.6624 < 8.6611] w=0.0750 to align # Constraint # added constraint: constraint((T0305)I246.CB, (T0305)F266.CB) [> 4.7394 = 7.8991 < 10.2688] w=0.0750 to align # Constraint # added constraint: constraint((T0305)T260.CB, (T0305)I295.CB) [> 4.1233 = 6.8722 < 8.9339] w=0.0693 to align # Constraint # added constraint: constraint((T0305)L103.CB, (T0305)E130.CB) [> 3.9481 = 6.5802 < 8.5542] w=0.0691 to align # Constraint # added constraint: constraint((T0305)F107.CB, (T0305)E130.CB) [> 3.6100 = 6.0166 < 7.8216] w=0.0691 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)I114.CB) [> 4.6124 = 7.6874 < 9.9936] w=0.0689 to align # Constraint # added constraint: constraint((T0305)I121.CB, (T0305)Y198.CB) [> 4.7356 = 7.8927 < 10.2606] w=0.0689 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)Y198.CB) [> 2.8763 = 4.7939 < 6.2320] w=0.0689 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)P202.CB) [> 4.4790 = 7.4649 < 9.7044] w=0.0689 to align # Constraint # added constraint: constraint((T0305)M5.CB, (T0305)V263.CB) [> 3.4732 = 5.7888 < 7.5254] w=0.0674 to align # Constraint # added constraint: constraint((T0305)L71.CB, (T0305)D80.CB) [> 3.9885 = 6.6475 < 8.6418] w=0.0674 to align # Constraint # added constraint: constraint((T0305)P72.CB, (T0305)I82.CB) [> 4.5138 = 7.5230 < 9.7799] w=0.0674 to align # Constraint # added constraint: constraint((T0305)H11.CB, (T0305)K268.CB) [> 4.0832 = 6.8053 < 8.8469] w=0.0674 to align # Constraint # added constraint: constraint((T0305)A162.CB, (T0305)Y209.CB) [> 3.8838 = 6.4730 < 8.4149] w=0.0674 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)G240.CA) [> 4.6382 = 7.7303 < 10.0494] w=0.0660 to align # Constraint # added constraint: constraint((T0305)Y196.CB, (T0305)L232.CB) [> 4.7017 = 7.8362 < 10.1870] w=0.0660 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)Y96.CB) [> 3.1100 = 5.1834 < 6.7385] w=0.0640 to align # Constraint # added constraint: constraint((T0305)H63.CB, (T0305)T99.CB) [> 3.6005 = 6.0008 < 7.8011] w=0.0640 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)A93.CB) [> 3.4675 = 5.7791 < 7.5129] w=0.0603 to align # Constraint # added constraint: constraint((T0305)R54.CB, (T0305)P102.CB) [> 4.3397 = 7.2328 < 9.4026] w=0.0596 to align # Constraint # added constraint: constraint((T0305)A41.CB, (T0305)I56.CB) [> 3.7067 = 6.1779 < 8.0312] w=0.0578 to align # Constraint # added constraint: constraint((T0305)F2.CB, (T0305)N262.CB) [> 2.6378 = 4.3964 < 5.7153] w=0.0578 to align # Constraint # added constraint: constraint((T0305)A84.CB, (T0305)F110.CB) [> 4.7871 = 7.9785 < 10.3720] w=0.0578 to align # Constraint # added constraint: constraint((T0305)Y96.CB, (T0305)T242.CB) [> 4.7078 = 7.8464 < 10.2003] w=0.0578 to align # Constraint # added constraint: constraint((T0305)F27.CB, (T0305)K268.CB) [> 4.4459 = 7.4098 < 9.6328] w=0.0578 to align # Constraint # added constraint: constraint((T0305)P212.CB, (T0305)Y245.CB) [> 4.6846 = 7.8077 < 10.1501] w=0.0558 to align # Constraint # added constraint: constraint((T0305)L59.CB, (T0305)Y276.CB) [> 4.0706 = 6.7844 < 8.8197] w=0.0542 to align # Constraint # added constraint: constraint((T0305)S250.CB, (T0305)T260.CB) [> 3.9397 = 6.5661 < 8.5360] w=0.0530 to align # Constraint # added constraint: constraint((T0305)T242.CB, (T0305)R274.CB) [> 4.7410 = 7.9017 < 10.2722] w=0.0527 to align # Constraint # added constraint: constraint((T0305)P102.CB, (T0305)W111.CB) [> 4.3729 = 7.2882 < 9.4747] w=0.0527 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)Y276.CB) [> 4.0508 = 6.7514 < 8.7768] w=0.0524 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)T242.CB) [> 4.6344 = 7.7239 < 10.0411] w=0.0490 to align # Constraint # added constraint: constraint((T0305)F2.CB, (T0305)T260.CB) [> 2.9600 = 4.9334 < 6.4134] w=0.0481 to align # Constraint # added constraint: constraint((T0305)P70.CB, (T0305)E116.CB) [> 4.3205 = 7.2008 < 9.3610] w=0.0481 to align # Constraint # added constraint: constraint((T0305)L71.CB, (T0305)N150.CB) [> 4.5578 = 7.5964 < 9.8753] w=0.0481 to align # Constraint # added constraint: constraint((T0305)Q138.CB, (T0305)S236.CB) [> 3.9448 = 6.5747 < 8.5471] w=0.0481 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)T106.CB) [> 4.2407 = 7.0678 < 9.1882] w=0.0481 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)Y81.CB) [> 4.2104 = 7.0173 < 9.1225] w=0.0461 to align # Constraint # added constraint: constraint((T0305)N127.CB, (T0305)C235.CB) [> 4.7623 = 7.9371 < 10.3183] w=0.0461 to align # Constraint # added constraint: constraint((T0305)H63.CB, (T0305)Q100.CB) [> 4.1640 = 6.9400 < 9.0220] w=0.0450 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)F110.CB) [> 4.4899 = 7.4832 < 9.7281] w=0.0450 to align # Constraint # added constraint: constraint((T0305)V66.CB, (T0305)R274.CB) [> 2.6298 = 4.3830 < 5.6979] w=0.0450 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)I246.CB) [> 3.3871 = 5.6452 < 7.3388] w=0.0450 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)R274.CB) [> 3.9384 = 6.5640 < 8.5331] w=0.0450 to align # Constraint # added constraint: constraint((T0305)R69.CB, (T0305)Y96.CB) [> 2.6065 = 4.3442 < 5.6475] w=0.0450 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)A95.CB) [> 2.9678 = 4.9464 < 6.4303] w=0.0410 to align # Constraint # added constraint: constraint((T0305)H11.CB, (T0305)G22.CA) [> 4.7598 = 7.9331 < 10.3130] w=0.0385 to align # Constraint # added constraint: constraint((T0305)W115.CB, (T0305)E190.CB) [> 4.2118 = 7.0196 < 9.1255] w=0.0385 to align # Constraint # added constraint: constraint((T0305)T158.CB, (T0305)S170.CB) [> 3.5831 = 5.9718 < 7.7634] w=0.0385 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)T174.CB) [> 4.3768 = 7.2947 < 9.4831] w=0.0385 to align # Constraint # added constraint: constraint((T0305)V153.CB, (T0305)N173.CB) [> 3.1858 = 5.3098 < 6.9027] w=0.0385 to align # Constraint # added constraint: constraint((T0305)I152.CB, (T0305)K175.CB) [> 4.4493 = 7.4155 < 9.6401] w=0.0385 to align # Constraint # added constraint: constraint((T0305)N173.CB, (T0305)V192.CB) [> 4.5008 = 7.5013 < 9.7517] w=0.0385 to align # Constraint # added constraint: constraint((T0305)R172.CB, (T0305)V192.CB) [> 3.1270 = 5.2117 < 6.7752] w=0.0385 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)Q195.CB) [> 4.1985 = 6.9975 < 9.0967] w=0.0385 to align # Constraint # added constraint: constraint((T0305)F169.CB, (T0305)H197.CB) [> 3.9901 = 6.6502 < 8.6452] w=0.0385 to align # Constraint # added constraint: constraint((T0305)R167.CB, (T0305)T199.CB) [> 3.4826 = 5.8043 < 7.5456] w=0.0385 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)Y198.CB) [> 3.2133 = 5.3556 < 6.9622] w=0.0385 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)S236.CB) [> 4.5999 = 7.6665 < 9.9664] w=0.0320 to align # Constraint # added constraint: constraint((T0305)T199.CB, (T0305)Y245.CB) [> 4.5563 = 7.5938 < 9.8720] w=0.0316 to align # Constraint # added constraint: constraint((T0305)N49.CB, (T0305)A60.CB) [> 3.7700 = 6.2833 < 8.1683] w=0.0308 to align # Constraint # added constraint: constraint((T0305)C33.CB, (T0305)Y61.CB) [> 4.1708 = 6.9513 < 9.0367] w=0.0289 to align # Constraint # added constraint: constraint((T0305)A95.CB, (T0305)I270.CB) [> 4.7994 = 7.9990 < 10.3987] w=0.0289 to align # Constraint # added constraint: constraint((T0305)V231.CB, (T0305)I246.CB) [> 4.7484 = 7.9139 < 10.2881] w=0.0289 to align # Constraint # added constraint: constraint((T0305)L15.CB, (T0305)L292.CB) [> 3.4746 = 5.7910 < 7.5283] w=0.0289 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)N189.CB) [> 3.6336 = 6.0559 < 7.8727] w=0.0289 to align # Constraint # added constraint: constraint((T0305)Y55.CB, (T0305)V239.CB) [> 4.7945 = 7.9908 < 10.3880] w=0.0289 to align # Constraint # added constraint: constraint((T0305)K67.CB, (T0305)H78.CB) [> 4.0946 = 6.8244 < 8.8717] w=0.0289 to align # Constraint # added constraint: constraint((T0305)A98.CB, (T0305)C235.CB) [> 4.7463 = 7.9105 < 10.2836] w=0.0289 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)Y198.CB) [> 4.3068 = 7.1780 < 9.3314] w=0.0289 to align # Constraint # added constraint: constraint((T0305)L68.CB, (T0305)G243.CA) [> 4.6559 = 7.7599 < 10.0878] w=0.0289 to align # Constraint # added constraint: constraint((T0305)V166.CB, (T0305)T199.CB) [> 4.7375 = 7.8958 < 10.2645] w=0.0289 to align # Constraint # added constraint: constraint((T0305)D26.CB, (T0305)K268.CB) [> 4.7481 = 7.9135 < 10.2876] w=0.0289 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)H197.CB) [> 4.7943 = 7.9905 < 10.3877] w=0.0289 to align # Constraint # added constraint: constraint((T0305)S170.CB, (T0305)I194.CB) [> 3.4744 = 5.7907 < 7.5279] w=0.0289 to align # Constraint # added constraint: constraint((T0305)I171.CB, (T0305)I194.CB) [> 4.6809 = 7.8014 < 10.1419] w=0.0289 to align # Constraint # added constraint: constraint((T0305)D80.CB, (T0305)T106.CB) [> 4.1634 = 6.9390 < 9.0206] w=0.0289 to align # Constraint # added constraint: constraint((T0305)G240.CA, (T0305)R274.CB) [> 4.6031 = 7.6718 < 9.9733] w=0.0285 to align # Constraint # added constraint: constraint((T0305)Y61.CB, (T0305)Q100.CB) [> 4.4249 = 7.3749 < 9.5873] w=0.0269 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)V192.CB) [> 4.3296 = 7.2161 < 9.3809] w=0.0241 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)V193.CB) [> 4.6324 = 7.7206 < 10.0368] w=0.0241 to align # Constraint # added constraint: constraint((T0305)M124.CB, (T0305)V193.CB) [> 3.3143 = 5.5239 < 7.1810] w=0.0241 to align # Constraint # added constraint: constraint((T0305)T242.CB, (T0305)N275.CB) [> 4.5335 = 7.5558 < 9.8225] w=0.0235 to align # Constraint # added constraint: constraint((T0305)G243.CA, (T0305)N275.CB) [> 2.8992 = 4.8319 < 6.2815] w=0.0235 to align # Constraint # added constraint: constraint((T0305)T244.CB, (T0305)L291.CB) [> 4.2914 = 7.1523 < 9.2980] w=0.0235 to align # Constraint # added constraint: constraint((T0305)K268.CB, (T0305)L277.CB) [> 4.7015 = 7.8358 < 10.1866] w=0.0235 to align # Constraint # added constraint: constraint((T0305)V176.CB, (T0305)Y198.CB) [> 2.6448 = 4.4079 < 5.7303] w=0.0220 to align # Constraint # added constraint: constraint((T0305)V217.CB, (T0305)K256.CB) [> 2.9165 = 4.8609 < 6.3192] w=0.0211 to align # Constraint # added constraint: constraint((T0305)T126.CB, (T0305)A237.CB) [> 4.7816 = 7.9693 < 10.3602] w=0.0199 to align # Constraint # added constraint: constraint((T0305)Y1.CB, (T0305)N262.CB) [> 4.5124 = 7.5206 < 9.7768] w=0.0193 to align # Constraint # added constraint: constraint((T0305)A93.CB, (T0305)Q254.CB) [> 4.4100 = 7.3499 < 9.5549] w=0.0193 to align # Constraint # added constraint: constraint((T0305)L71.CB, (T0305)G149.CA) [> 4.4524 = 7.4206 < 9.6468] w=0.0193 to align # Constraint # added constraint: constraint((T0305)T154.CB, (T0305)T174.CB) [> 4.5634 = 7.6057 < 9.8874] w=0.0192 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)M113.CB) [> 4.4146 = 7.3576 < 9.5649] w=0.0161 to align # Constraint # added constraint: constraint((T0305)S64.CB, (T0305)A237.CB) [> 4.5148 = 7.5246 < 9.7820] w=0.0161 to align # Constraint # added constraint: constraint((T0305)I122.CB, (T0305)R133.CB) [> 4.2743 = 7.1238 < 9.2610] w=0.0161 to align # Constraint # added constraint: constraint((T0305)V123.CB, (T0305)I194.CB) [> 3.8799 = 6.4665 < 8.4064] w=0.0161 to align # Constraint # added constraint: constraint((T0305)R133.CB, (T0305)N189.CB) [> 4.6907 = 7.8179 < 10.1633] w=0.0161 to align # Constraint # added constraint: constraint((T0305)R65.CB, (T0305)Y148.CB) [> 4.7294 = 7.8823 < 10.2469] w=0.0157 to align # Constraint # added constraint: constraint((T0305)H63.CB, (T0305)G149.CA) [> 3.7970 = 6.3283 < 8.2268] w=0.0157 to align # Constraint # added constraint: constraint((T0305)L128.CB, (T0305)V176.CB) [> 4.7035 = 7.8391 < 10.1908] w=0.0124 to align # Constraint # added constraint: constraint((T0305)M204.CB, (T0305)C235.CB) [> 4.5798 = 7.6330 < 9.9228] w=0.0109 to align # Constraint # added constraint: constraint((T0305)C33.CB, (T0305)N57.CB) [> 3.7670 = 6.2784 < 8.1619] w=0.0096 to align # Constraint # added constraint: constraint((T0305)N57.CB, (T0305)A237.CB) [> 4.7628 = 7.9379 < 10.3193] w=0.0096 to align # Constraint # added constraint: constraint((T0305)Y1.CB, (T0305)H288.CB) [> 3.7133 = 6.1889 < 8.0456] w=0.0096 to align # Constraint # added constraint: constraint((T0305)Y1.CB, (T0305)L264.CB) [> 4.7731 = 7.9552 < 10.3418] w=0.0096 to align # Constraint # added constraint: constraint((T0305)P70.CB, (T0305)Y96.CB) [> 4.2991 = 7.1651 < 9.3147] w=0.0080 to align # Constraint # added constraint: constraint((T0305)P70.CB, (T0305)I97.CB) [> 3.0733 = 5.1221 < 6.6588] w=0.0080 to align # Constraint # added constraint: constraint((T0305)L71.CB, (T0305)I246.CB) [> 3.6533 = 6.0889 < 7.9155] w=0.0080 to align # Constraint # added constraint: constraint((T0305)I56.CB, (T0305)V66.CB) [> 4.0597 = 6.7661 < 8.7959] w=0.0080 to align # Constraint # added constraint: constraint((T0305)I56.CB, (T0305)R274.CB) [> 4.7015 = 7.8358 < 10.1865] w=0.0080 to align # Constraint # added constraint: constraint((T0305)I58.CB, (T0305)R69.CB) [> 2.6216 = 4.3694 < 5.6802] w=0.0080 to align # Constraint # added constraint: constraint((T0305)D80.CB, (T0305)A93.CB) [> 3.0508 = 5.0847 < 6.6101] w=0.0078 to align # Constraint # added constraint: constraint((T0305)D62.CB, (T0305)N150.CB) [> 4.6780 = 7.7967 < 10.1357] w=0.0078 to align # Constraint # added constraint: constraint((T0305)S44.CB, (T0305)Y55.CB) [> 2.4694 = 4.1157 < 5.3505] w=0.0057 to align # Constraint # added constraint: constraint((T0305)N53.CB, (T0305)A237.CB) [> 3.9775 = 6.6291 < 8.6179] w=0.0057 to align # Constraint # added constraint: constraint((T0305)T99.CB, (T0305)I122.CB) [> 4.7300 = 7.8834 < 10.2484] w=0.0029 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0305/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0305/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 26, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 462, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 464, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 466, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 468, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 666, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 668, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 678, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 680, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 682, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 684, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 754, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 756, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 758, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 760, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 762, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 764, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 766, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 768, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 772, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 782, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 784, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 786, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 788, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 790, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 792, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 794, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 796, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 806, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 808, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 810, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 812, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 814, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 816, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 818, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 820, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 822, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 824, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 826, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 828, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 840, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 854, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 856, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 858, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 860, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 954, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 956, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 958, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 960, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 978, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 980, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 982, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 984, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1002, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1004, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1006, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1008, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1074, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1076, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1078, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1080, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1106, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1107, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1109, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1110, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1112, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1113, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1115, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 1116, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 166, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 168, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 326, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 622, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 624, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 626, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 628, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 914, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 916, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 174, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 176, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 178, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 180, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 634, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 636, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 638, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 640, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 926, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 928, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 585, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0305)T174.CA and (T0305)K185.CA only 0.000 apart, marking (T0305)K185.CA as missing # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 792, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 1049, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 987, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 Skipped atom 585, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 18, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 20, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 22, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 24, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 454, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 456, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 658, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 660, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 662, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 664, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 674, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 676, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 746, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 752, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 754, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 756, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 758, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 760, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 762, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 764, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 766, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 768, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 772, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 782, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 784, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 786, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 788, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 790, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 792, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 794, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 796, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 806, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 808, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 810, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 812, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 814, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 816, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 818, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 820, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 822, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 824, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 826, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 828, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 840, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 850, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 852, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 946, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 948, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 950, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 952, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 970, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 972, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 974, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 976, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 994, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 996, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 998, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1000, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1066, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1068, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1070, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1072, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1098, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1099, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1101, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1102, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1104, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1105, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1107, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 1108, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 622, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 624, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 626, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 628, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 Skipped atom 585, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0305)S157.O and (T0305)T158.N only 0.000 apart, marking (T0305)T158.N as missing # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0305)V129.O and (T0305)E130.N only 0.000 apart, marking (T0305)E130.N as missing # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0305)Q3.O and (T0305)S4.N only 0.000 apart, marking (T0305)S4.N as missing WARNING: atoms too close: (T0305)L68.O and (T0305)R69.N only 0.000 apart, marking (T0305)R69.N as missing # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0305 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 257 model score -0.5152 model score -0.5204 model score -0.5316 model score -0.6373 model score -0.5339 model score -0.5901 model score -0.5879 model score -0.5158 model score -0.5707 model score -0.5696 model score -0.5256 model score -0.6695 model score -0.5872 model score -0.6630 model score -0.5677 model score -0.7262 model score 1.6250 model score 1.9722 model score 1.9983 model score 1.7134 model score 1.7505 model score 2.0541 model score 1.9237 model score 1.8956 model score 1.8599 model score -0.7442 model score -0.5767 model score -0.6114 model score -0.7342 model score -0.6532 model score -0.7195 model score -0.7137 model score -0.6745 model score -0.7080 model score -0.6955 model score -0.6953 model score -0.6923 model score -0.7199 model score -0.7098 model score -0.7046 model score -0.6689 model score -0.7140 model score 1.2680 model score 1.2669 model score 1.2670 model score 1.2644 model score 1.2670 model score -0.7192 model score -0.6932 model score -0.6590 model score -0.7013 model score -0.7136 model score -0.7495 model score -0.7174 model score -0.6745 model score -0.7191 model score -0.7080 model score -0.7352 model score 1.3130 model score 1.8618 model score 1.3734 model score 2.1428 model score 1.2871 model score 1.2648 model score 1.2651 model score 1.2647 model score 1.2645 model score 1.2647 model score 1.2871 model score 1.2648 model score 1.2645 model score 1.2710 model score 2.4617 model score 2.3742 model score 2.5177 model score 2.3573 model score 2.3701 model score -0.7178 model score -0.6709 model score 0.0316 model score -0.0821 model score 2.0035 model score 1.2650 model score 1.2690 model score 1.2695 model score 1.2661 model score 1.2830 model score -0.7122 model score -0.7174 model score -0.7172 model score -0.6718 model score -0.7191 model score -0.6552 model score -0.6640 model score -0.7155 model score -0.6786 model score -0.7040 model score -0.7257 model score -0.7478 model score -0.7549 model score -0.6377 model score -0.6743 model score -0.6723 model score -0.6108 model score -0.6634 model score -0.6886 model score -0.6342 model score -0.6344 model score -0.6587 model score -0.6292 model score -0.7038 model score -0.7314 model score -0.6726 model score -0.6816 model score -0.6626 model score -0.3606 model score -0.3868 model score -0.4390 model score -0.4901 model score -0.4349 model score -0.6886 model score -0.6841 model score -0.6841 model score -0.6870 model score -0.6916 model score -0.6889 model score -0.7272 model score -0.7075 model score -0.6841 model score 1.0466 model score -0.5886 model score -0.7335 model score -0.7335 model score -0.7122 model score -0.7192 model score -0.7110 model score -0.7049 model score -0.7164 model score -0.6949 model score -0.6949 model score -0.6969 model score -0.7184 model score -0.6827 model score -0.6827 model score -0.6813 model score -0.7188 model score -0.7192 model score -0.6824 model score -0.7267 model score -0.7102 model score -0.7045 model score -0.7210 model score -0.6652 model score -0.6477 model score -0.5890 model score -0.6750 model score -0.6393 model score -0.7251 model score -0.6996 model score -0.6609 model score -0.7124 model score -0.7124 model score -0.7121 model score -0.7289 model score -0.7224 model score -0.7244 model score -0.7266 model score -0.7291 model score 2.4701 model score -0.7348 model score -0.7014 model score -0.6668 model score 1.2647 model score 1.2648 model score 1.2651 model score 1.2649 model score 1.2652 model score 1.2649 model score 1.2646 model score 1.2648 model score 1.2652 model score 1.2643 model score -0.6142 model score -0.3737 model score -0.6457 model score -0.7009 model score -0.6879 model score -0.7085 model score -0.6634 model score -0.6231 model score -0.7384 model score -0.6609 model score -0.6892 model score -0.6725 model score -0.6284 model score -0.7384 model score -0.6697 model score -0.7085 model score -0.6730 model score -0.6272 model score -0.6636 model score -0.7253 model score 1.2650 model score 1.2651 model score 1.2648 model score 1.2656 model score 1.2646 model score -0.7138 model score 1.2650 model score 1.2651 model score 1.2648 model score 1.2656 model score 1.2646 model score -0.7282 model score -0.7275 model score -0.7125 model score -0.7392 model score -0.6895 model score -0.6836 model score -0.6367 model score 1.2651 model score 1.2648 model score 1.2646 model score 1.2649 model score 1.2645 model score 1.2656 model score 1.2662 model score 1.2646 model score 1.2646 model score 1.2649 model score -0.7139 model score -0.7199 model score -0.7304 model score -0.6708 model score -0.7374 model score 2.3160 model score 2.1252 model score 2.5530 model score 2.3839 model score 2.2445 model score -0.7223 model score -0.6690 model score -0.5976 model score -0.5772 model score -0.6372 model score -0.6388 model score -0.6549 model score -0.6422 model score -0.6160 model score -0.6349 model score -0.3995 model score -0.6857 model score -0.7281 model score -0.2366 model score -0.2445 model score 0.0047 model score -0.6136 weight: 0.9348 eval: -0.5152 min: -0.7549 max: 2.5530 weight: 0.9362 eval: -0.5204 min: -0.7549 max: 2.5530 weight: 0.9393 eval: -0.5316 min: -0.7549 max: 2.5530 weight: 0.9680 eval: -0.6373 min: -0.7549 max: 2.5530 weight: 0.9399 eval: -0.5339 min: -0.7549 max: 2.5530 weight: 0.9551 eval: -0.5901 min: -0.7549 max: 2.5530 weight: 0.9546 eval: -0.5879 min: -0.7549 max: 2.5530 weight: 0.9349 eval: -0.5158 min: -0.7549 max: 2.5530 weight: 0.9499 eval: -0.5707 min: -0.7549 max: 2.5530 weight: 0.9496 eval: -0.5696 min: -0.7549 max: 2.5530 weight: 0.9376 eval: -0.5256 min: -0.7549 max: 2.5530 weight: 0.9768 eval: -0.6695 min: -0.7549 max: 2.5530 weight: 0.9544 eval: -0.5872 min: -0.7549 max: 2.5530 weight: 0.9750 eval: -0.6630 min: -0.7549 max: 2.5530 weight: 0.9491 eval: -0.5677 min: -0.7549 max: 2.5530 weight: 0.9922 eval: -0.7262 min: -0.7549 max: 2.5530 weight: 0.3525 eval: 1.6250 min: -0.7549 max: 2.5530 weight: 0.2580 eval: 1.9722 min: -0.7549 max: 2.5530 weight: 0.2509 eval: 1.9983 min: -0.7549 max: 2.5530 weight: 0.3284 eval: 1.7134 min: -0.7549 max: 2.5530 weight: 0.3183 eval: 1.7505 min: -0.7549 max: 2.5530 weight: 0.2357 eval: 2.0541 min: -0.7549 max: 2.5530 weight: 0.2712 eval: 1.9237 min: -0.7549 max: 2.5530 weight: 0.2789 eval: 1.8956 min: -0.7549 max: 2.5530 weight: 0.2886 eval: 1.8599 min: -0.7549 max: 2.5530 weight: 0.9971 eval: -0.7442 min: -0.7549 max: 2.5530 weight: 0.9515 eval: -0.5767 min: -0.7549 max: 2.5530 weight: 0.9609 eval: -0.6114 min: -0.7549 max: 2.5530 weight: 0.9944 eval: -0.7342 min: -0.7549 max: 2.5530 weight: 0.9723 eval: -0.6532 min: -0.7549 max: 2.5530 weight: 0.9904 eval: -0.7195 min: -0.7549 max: 2.5530 weight: 0.9888 eval: -0.7137 min: -0.7549 max: 2.5530 weight: 0.9781 eval: -0.6745 min: -0.7549 max: 2.5530 weight: 0.9872 eval: -0.7080 min: -0.7549 max: 2.5530 weight: 0.9838 eval: -0.6955 min: -0.7549 max: 2.5530 weight: 0.9838 eval: -0.6953 min: -0.7549 max: 2.5530 weight: 0.9830 eval: -0.6923 min: -0.7549 max: 2.5530 weight: 0.9905 eval: -0.7199 min: -0.7549 max: 2.5530 weight: 0.9877 eval: -0.7098 min: -0.7549 max: 2.5530 weight: 0.9863 eval: -0.7046 min: -0.7549 max: 2.5530 weight: 0.9766 eval: -0.6689 min: -0.7549 max: 2.5530 weight: 0.9889 eval: -0.7140 min: -0.7549 max: 2.5530 weight: 0.4496 eval: 1.2680 min: -0.7549 max: 2.5530 weight: 0.4499 eval: 1.2669 min: -0.7549 max: 2.5530 weight: 0.4499 eval: 1.2670 min: -0.7549 max: 2.5530 weight: 0.4506 eval: 1.2644 min: -0.7549 max: 2.5530 weight: 0.4499 eval: 1.2670 min: -0.7549 max: 2.5530 weight: 0.9903 eval: -0.7192 min: -0.7549 max: 2.5530 weight: 0.9832 eval: -0.6932 min: -0.7549 max: 2.5530 weight: 0.9739 eval: -0.6590 min: -0.7549 max: 2.5530 weight: 0.9854 eval: -0.7013 min: -0.7549 max: 2.5530 weight: 0.9888 eval: -0.7136 min: -0.7549 max: 2.5530 weight: 0.9985 eval: -0.7495 min: -0.7549 max: 2.5530 weight: 0.9898 eval: -0.7174 min: -0.7549 max: 2.5530 weight: 0.9781 eval: -0.6745 min: -0.7549 max: 2.5530 weight: 0.9903 eval: -0.7191 min: -0.7549 max: 2.5530 weight: 0.9872 eval: -0.7080 min: -0.7549 max: 2.5530 weight: 0.9946 eval: -0.7352 min: -0.7549 max: 2.5530 weight: 0.4374 eval: 1.3130 min: -0.7549 max: 2.5530 weight: 0.2880 eval: 1.8618 min: -0.7549 max: 2.5530 weight: 0.4209 eval: 1.3734 min: -0.7549 max: 2.5530 weight: 0.2116 eval: 2.1428 min: -0.7549 max: 2.5530 weight: 0.4444 eval: 1.2871 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2651 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2647 min: -0.7549 max: 2.5530 weight: 0.4506 eval: 1.2645 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2647 min: -0.7549 max: 2.5530 weight: 0.4444 eval: 1.2871 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4506 eval: 1.2645 min: -0.7549 max: 2.5530 weight: 0.4488 eval: 1.2710 min: -0.7549 max: 2.5530 weight: 0.1248 eval: 2.4617 min: -0.7549 max: 2.5530 weight: 0.1486 eval: 2.3742 min: -0.7549 max: 2.5530 weight: 0.1096 eval: 2.5177 min: -0.7549 max: 2.5530 weight: 0.1532 eval: 2.3573 min: -0.7549 max: 2.5530 weight: 0.1497 eval: 2.3701 min: -0.7549 max: 2.5530 weight: 0.9899 eval: -0.7178 min: -0.7549 max: 2.5530 weight: 0.9771 eval: -0.6709 min: -0.7549 max: 2.5530 weight: 0.7860 eval: 0.0316 min: -0.7549 max: 2.5530 weight: 0.8169 eval: -0.0821 min: -0.7549 max: 2.5530 weight: 0.2495 eval: 2.0035 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2650 min: -0.7549 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-0.6743 min: -0.7549 max: 2.5530 weight: 0.9775 eval: -0.6723 min: -0.7549 max: 2.5530 weight: 0.9608 eval: -0.6108 min: -0.7549 max: 2.5530 weight: 0.9751 eval: -0.6634 min: -0.7549 max: 2.5530 weight: 0.9820 eval: -0.6886 min: -0.7549 max: 2.5530 weight: 0.9672 eval: -0.6342 min: -0.7549 max: 2.5530 weight: 0.9672 eval: -0.6344 min: -0.7549 max: 2.5530 weight: 0.9738 eval: -0.6587 min: -0.7549 max: 2.5530 weight: 0.9658 eval: -0.6292 min: -0.7549 max: 2.5530 weight: 0.9861 eval: -0.7038 min: -0.7549 max: 2.5530 weight: 0.9936 eval: -0.7314 min: -0.7549 max: 2.5530 weight: 0.9776 eval: -0.6726 min: -0.7549 max: 2.5530 weight: 0.9801 eval: -0.6816 min: -0.7549 max: 2.5530 weight: 0.9749 eval: -0.6626 min: -0.7549 max: 2.5530 weight: 0.8927 eval: -0.3606 min: -0.7549 max: 2.5530 weight: 0.8998 eval: -0.3868 min: -0.7549 max: 2.5530 weight: 0.9140 eval: -0.4390 min: -0.7549 max: 2.5530 weight: 0.9280 eval: -0.4901 min: -0.7549 max: 2.5530 weight: 0.9129 eval: -0.4349 min: -0.7549 max: 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1.2649 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2652 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2649 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2652 min: -0.7549 max: 2.5530 weight: 0.4506 eval: 1.2643 min: -0.7549 max: 2.5530 weight: 0.9617 eval: -0.6142 min: -0.7549 max: 2.5530 weight: 0.8963 eval: -0.3737 min: -0.7549 max: 2.5530 weight: 0.9703 eval: -0.6457 min: -0.7549 max: 2.5530 weight: 0.9853 eval: -0.7009 min: -0.7549 max: 2.5530 weight: 0.9818 eval: -0.6879 min: -0.7549 max: 2.5530 weight: 0.9874 eval: -0.7085 min: -0.7549 max: 2.5530 weight: 0.9751 eval: -0.6634 min: -0.7549 max: 2.5530 weight: 0.9642 eval: -0.6231 min: -0.7549 max: 2.5530 weight: 0.9955 eval: -0.7384 min: -0.7549 max: 2.5530 weight: 0.9744 eval: -0.6609 min: -0.7549 max: 2.5530 weight: 0.9821 eval: -0.6892 min: -0.7549 max: 2.5530 weight: 0.9776 eval: -0.6725 min: -0.7549 max: 2.5530 weight: 0.9656 eval: -0.6284 min: -0.7549 max: 2.5530 weight: 0.9955 eval: -0.7384 min: -0.7549 max: 2.5530 weight: 0.9768 eval: -0.6697 min: -0.7549 max: 2.5530 weight: 0.9874 eval: -0.7085 min: -0.7549 max: 2.5530 weight: 0.9777 eval: -0.6730 min: -0.7549 max: 2.5530 weight: 0.9653 eval: -0.6272 min: -0.7549 max: 2.5530 weight: 0.9752 eval: -0.6636 min: -0.7549 max: 2.5530 weight: 0.9919 eval: -0.7253 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2650 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2651 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4503 eval: 1.2656 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.9888 eval: -0.7138 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2650 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2651 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4503 eval: 1.2656 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.9927 eval: -0.7282 min: -0.7549 max: 2.5530 weight: 0.9925 eval: -0.7275 min: -0.7549 max: 2.5530 weight: 0.9885 eval: -0.7125 min: -0.7549 max: 2.5530 weight: 0.9957 eval: -0.7392 min: -0.7549 max: 2.5530 weight: 0.9822 eval: -0.6895 min: -0.7549 max: 2.5530 weight: 0.9806 eval: -0.6836 min: -0.7549 max: 2.5530 weight: 0.9678 eval: -0.6367 min: -0.7549 max: 2.5530 weight: 0.4504 eval: 1.2651 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2648 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2649 min: -0.7549 max: 2.5530 weight: 0.4506 eval: 1.2645 min: -0.7549 max: 2.5530 weight: 0.4503 eval: 1.2656 min: -0.7549 max: 2.5530 weight: 0.4501 eval: 1.2662 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2646 min: -0.7549 max: 2.5530 weight: 0.4505 eval: 1.2649 min: -0.7549 max: 2.5530 weight: 0.9888 eval: -0.7139 min: -0.7549 max: 2.5530 weight: 0.9905 eval: -0.7199 min: -0.7549 max: 2.5530 weight: 0.9933 eval: -0.7304 min: -0.7549 max: 2.5530 weight: 0.9771 eval: -0.6708 min: -0.7549 max: 2.5530 weight: 0.9952 eval: -0.7374 min: -0.7549 max: 2.5530 weight: 0.1645 eval: 2.3160 min: -0.7549 max: 2.5530 weight: 0.2164 eval: 2.1252 min: -0.7549 max: 2.5530 weight: 0.1000 eval: 2.5530 min: -0.7549 max: 2.5530 weight: 0.1460 eval: 2.3839 min: -0.7549 max: 2.5530 weight: 0.1839 eval: 2.2445 min: -0.7549 max: 2.5530 weight: 0.9911 eval: -0.7223 min: -0.7549 max: 2.5530 weight: 0.9766 eval: -0.6690 min: -0.7549 max: 2.5530 weight: 0.9572 eval: -0.5976 min: -0.7549 max: 2.5530 weight: 0.9517 eval: -0.5772 min: -0.7549 max: 2.5530 weight: 0.9680 eval: -0.6372 min: -0.7549 max: 2.5530 weight: 0.9684 eval: -0.6388 min: -0.7549 max: 2.5530 weight: 0.9728 eval: -0.6549 min: -0.7549 max: 2.5530 weight: 0.9693 eval: -0.6422 min: -0.7549 max: 2.5530 weight: 0.9622 eval: -0.6160 min: -0.7549 max: 2.5530 weight: 0.9673 eval: -0.6349 min: -0.7549 max: 2.5530 weight: 0.9033 eval: -0.3995 min: -0.7549 max: 2.5530 weight: 0.9812 eval: -0.6857 min: -0.7549 max: 2.5530 weight: 0.9927 eval: -0.7281 min: -0.7549 max: 2.5530 weight: 0.8590 eval: -0.2366 min: -0.7549 max: 2.5530 weight: 0.8611 eval: -0.2445 min: -0.7549 max: 2.5530 weight: 0.7933 eval: 0.0047 min: -0.7549 max: 2.5530 weight: 0.9616 eval: -0.6136 min: -0.7549 max: 2.5530 Adding 11856 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -524.7137, CN propb: -524.7137 weights: 0.4113 constraints: 971 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 971 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 971 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 10885 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 10885 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 11856 # command: