# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0304/ # command:# Making conformation for sequence T0304 numbered 1 through 122 Created new target T0304 from T0304.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0304/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0304//projects/compbio/experiments/protein-predict/casp7/T0304/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0304//projects/compbio/experiments/protein-predict/casp7/T0304/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0304/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0304/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)A101.CB) [> 4.3384 = 7.2306 < 9.3998] w=1.0000 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)A101.CB) [> 3.2206 = 5.3677 < 6.9780] w=1.0000 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)K100.CB) [> 3.3431 = 5.5718 < 7.2433] w=0.8534 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)K100.CB) [> 4.2956 = 7.1594 < 9.3072] w=0.8127 to align # Constraint # added constraint: constraint((T0304)L92.CB, (T0304)A101.CB) [> 4.0955 = 6.8258 < 8.8736] w=0.7597 to align # Constraint # added constraint: constraint((T0304)C99.CB, (T0304)A113.CB) [> 3.8991 = 6.4986 < 8.4482] w=0.7141 to align # Constraint # added constraint: constraint((T0304)A45.CB, (T0304)F54.CB) [> 3.6103 = 6.0173 < 7.8224] w=0.6652 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)F54.CB) [> 4.0285 = 6.7142 < 8.7284] w=0.6652 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)K100.CB) [> 3.8898 = 6.4830 < 8.4280] w=0.6255 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)D102.CB) [> 3.1891 = 5.3151 < 6.9096] w=0.6110 to align # Constraint # added constraint: constraint((T0304)H86.CB, (T0304)T98.CB) [> 4.1786 = 6.9644 < 9.0537] w=0.6083 to align # Constraint # added constraint: constraint((T0304)H86.CB, (T0304)C99.CB) [> 3.6040 = 6.0066 < 7.8086] w=0.6083 to align # Constraint # added constraint: constraint((T0304)Q87.CB, (T0304)T98.CB) [> 4.1065 = 6.8442 < 8.8974] w=0.6083 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)L97.CB) [> 3.6231 = 6.0385 < 7.8500] w=0.6083 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)C99.CB) [> 4.0664 = 6.7773 < 8.8105] w=0.6083 to align # Constraint # added constraint: constraint((T0304)M70.CB, (T0304)L82.CB) [> 4.5566 = 7.5944 < 9.8727] w=0.5995 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)Y43.CB) [> 3.6246 = 6.0410 < 7.8533] w=0.5677 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)R51.CB) [> 4.2994 = 7.1656 < 9.3153] w=0.5677 to align # Constraint # added constraint: constraint((T0304)G52.CA, (T0304)L62.CB) [> 3.7046 = 6.1744 < 8.0267] w=0.5677 to align # Constraint # added constraint: constraint((T0304)L41.CB, (T0304)F66.CB) [> 4.1260 = 6.8766 < 8.9396] w=0.5575 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)A59.CB) [> 3.7292 = 6.2153 < 8.0798] w=0.5427 to align # Constraint # added constraint: constraint((T0304)M70.CB, (T0304)A113.CB) [> 3.6561 = 6.0934 < 7.9215] w=0.5416 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)D102.CB) [> 3.6864 = 6.1440 < 7.9872] w=0.5416 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)T103.CB) [> 3.9181 = 6.5302 < 8.4892] w=0.5416 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)Y109.CB) [> 4.3917 = 7.3195 < 9.5153] w=0.5416 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)Y111.CB) [> 4.6530 = 7.7551 < 10.0816] w=0.5416 to align # Constraint # added constraint: constraint((T0304)T98.CB, (T0304)L112.CB) [> 3.8232 = 6.3720 < 8.2837] w=0.5416 to align # Constraint # added constraint: constraint((T0304)T98.CB, (T0304)A113.CB) [> 3.2234 = 5.3724 < 6.9840] w=0.5416 to align # Constraint # added constraint: constraint((T0304)C99.CB, (T0304)L112.CB) [> 3.1022 = 5.1703 < 6.7214] w=0.5416 to align # Constraint # added constraint: constraint((T0304)K100.CB, (T0304)V110.CB) [> 4.0906 = 6.8176 < 8.8629] w=0.5416 to align # Constraint # added constraint: constraint((T0304)K100.CB, (T0304)Y111.CB) [> 3.3411 = 5.5685 < 7.2391] w=0.5416 to align # Constraint # added constraint: constraint((T0304)A101.CB, (T0304)V110.CB) [> 3.7826 = 6.3043 < 8.1957] w=0.5416 to align # Constraint # added constraint: constraint((T0304)A101.CB, (T0304)Y111.CB) [> 3.9828 = 6.6380 < 8.6294] w=0.5416 to align # Constraint # added constraint: constraint((T0304)D102.CB, (T0304)Y111.CB) [> 3.9901 = 6.6502 < 8.6453] w=0.5416 to align # Constraint # added constraint: constraint((T0304)L53.CB, (T0304)Q64.CB) [> 3.8319 = 6.3864 < 8.3024] w=0.5344 to align # Constraint # added constraint: constraint((T0304)Q36.CB, (T0304)F54.CB) [> 3.8517 = 6.4194 < 8.3453] w=0.5276 to align # Constraint # added constraint: constraint((T0304)L82.CB, (T0304)T103.CB) [> 3.3767 = 5.6278 < 7.3162] w=0.5198 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)G52.CA) [> 3.7235 = 6.2059 < 8.0677] w=0.5096 to align # Constraint # added constraint: constraint((T0304)Y43.CB, (T0304)A59.CB) [> 3.8063 = 6.3438 < 8.2469] w=0.4895 to align # Constraint # added constraint: constraint((T0304)T98.CB, (T0304)Y115.CB) [> 3.7017 = 6.1695 < 8.0203] w=0.4792 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)Y115.CB) [> 3.5348 = 5.8913 < 7.6586] w=0.4792 to align # Constraint # added constraint: constraint((T0304)G96.CA, (T0304)Y115.CB) [> 3.0114 = 5.0190 < 6.5247] w=0.4792 to align # Constraint # added constraint: constraint((T0304)L73.CB, (T0304)A101.CB) [> 3.8795 = 6.4659 < 8.4057] w=0.4531 to align # Constraint # added constraint: constraint((T0304)E81.CB, (T0304)P116.CB) [> 3.7177 = 6.1962 < 8.0551] w=0.4365 to align # Constraint # added constraint: constraint((T0304)G38.CA, (T0304)M70.CB) [> 4.6377 = 7.7295 < 10.0484] w=0.3976 to align # Constraint # added constraint: constraint((T0304)L73.CB, (T0304)L82.CB) [> 4.0001 = 6.6668 < 8.6669] w=0.3816 to align # Constraint # added constraint: constraint((T0304)L92.CB, (T0304)Y109.CB) [> 4.4300 = 7.3833 < 9.5983] w=0.3717 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)T103.CB) [> 4.6475 = 7.7459 < 10.0696] w=0.3706 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)T103.CB) [> 3.3013 = 5.5022 < 7.1528] w=0.3706 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)V90.CB) [> 3.5232 = 5.8720 < 7.6336] w=0.3706 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)I50.CB) [> 3.1726 = 5.2877 < 6.8740] w=0.3664 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)R51.CB) [> 4.3042 = 7.1737 < 9.3259] w=0.3664 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)G52.CA) [> 3.6559 = 6.0931 < 7.9211] w=0.3664 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)G52.CA) [> 3.2862 = 5.4770 < 7.1201] w=0.3664 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)F54.CB) [> 3.9038 = 6.5063 < 8.4581] w=0.3664 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)D102.CB) [> 2.6659 = 4.4432 < 5.7761] w=0.3544 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)A101.CB) [> 4.6266 = 7.7111 < 10.0244] w=0.3544 to align # Constraint # added constraint: constraint((T0304)S79.CB, (T0304)D102.CB) [> 3.9514 = 6.5856 < 8.5613] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L77.CB, (T0304)L104.CB) [> 3.2959 = 5.4932 < 7.1411] w=0.3544 to align # Constraint # added constraint: constraint((T0304)E74.CB, (T0304)Y111.CB) [> 2.8106 = 4.6843 < 6.0896] w=0.3544 to align # Constraint # added constraint: constraint((T0304)E74.CB, (T0304)D102.CB) [> 4.4721 = 7.4535 < 9.6896] w=0.3544 to align # Constraint # added constraint: constraint((T0304)K71.CB, (T0304)A113.CB) [> 4.7131 = 7.8552 < 10.2117] w=0.3544 to align # Constraint # added constraint: constraint((T0304)M70.CB, (T0304)L112.CB) [> 4.3145 = 7.1908 < 9.3480] w=0.3544 to align # Constraint # added constraint: constraint((T0304)M70.CB, (T0304)Y111.CB) [> 3.2106 = 5.3509 < 6.9562] w=0.3544 to align # Constraint # added constraint: constraint((T0304)P67.CB, (T0304)A113.CB) [> 3.2127 = 5.3545 < 6.9608] w=0.3544 to align # Constraint # added constraint: constraint((T0304)F54.CB, (T0304)P116.CB) [> 4.4327 = 7.3879 < 9.6042] w=0.3544 to align # Constraint # added constraint: constraint((T0304)F54.CB, (T0304)Y115.CB) [> 2.7665 = 4.6109 < 5.9941] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L53.CB, (T0304)T117.CB) [> 3.2140 = 5.3567 < 6.9637] w=0.3544 to align # Constraint # added constraint: constraint((T0304)C99.CB, (T0304)Y111.CB) [> 3.7247 = 6.2078 < 8.0702] w=0.3544 to align # Constraint # added constraint: constraint((T0304)C99.CB, (T0304)V110.CB) [> 3.2916 = 5.4860 < 7.1318] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)P116.CB) [> 4.3401 = 7.2335 < 9.4036] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)V114.CB) [> 2.9388 = 4.8980 < 6.3674] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)A113.CB) [> 3.6803 = 6.1338 < 7.9739] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)L112.CB) [> 2.9748 = 4.9579 < 6.4453] w=0.3544 to align # Constraint # added constraint: constraint((T0304)G96.CA, (T0304)P116.CB) [> 2.9716 = 4.9527 < 6.4386] w=0.3544 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)Y111.CB) [> 4.0862 = 6.8103 < 8.8533] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L82.CB, (T0304)T98.CB) [> 3.0359 = 5.0598 < 6.5778] w=0.3544 to align # Constraint # added constraint: constraint((T0304)L82.CB, (T0304)L112.CB) [> 4.6190 = 7.6984 < 10.0079] w=0.3544 to align # Constraint # added constraint: constraint((T0304)N83.CB, (T0304)T98.CB) [> 4.3969 = 7.3282 < 9.5267] w=0.3544 to align # Constraint # added constraint: constraint((T0304)N83.CB, (T0304)K100.CB) [> 4.1015 = 6.8359 < 8.8867] w=0.3544 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)V114.CB) [> 4.2510 = 7.0850 < 9.2105] w=0.3334 to align # Constraint # added constraint: constraint((T0304)R40.CB, (T0304)G52.CA) [> 4.0265 = 6.7108 < 8.7241] w=0.3297 to align # Constraint # added constraint: constraint((T0304)Y43.CB, (T0304)G52.CA) [> 3.2861 = 5.4769 < 7.1199] w=0.3297 to align # Constraint # added constraint: constraint((T0304)Y43.CB, (T0304)L53.CB) [> 3.5135 = 5.8558 < 7.6126] w=0.3297 to align # Constraint # added constraint: constraint((T0304)Y43.CB, (T0304)F54.CB) [> 2.9346 = 4.8911 < 6.3584] w=0.3297 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)S55.CB) [> 4.4994 = 7.4990 < 9.7487] w=0.3297 to align # Constraint # added constraint: constraint((T0304)A45.CB, (T0304)S55.CB) [> 3.4124 = 5.6873 < 7.3935] w=0.3297 to align # Constraint # added constraint: constraint((T0304)A101.CB, (T0304)L112.CB) [> 4.2891 = 7.1485 < 9.2931] w=0.2919 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)A48.CB) [> 4.5264 = 7.5439 < 9.8071] w=0.2877 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)G49.CA) [> 4.2160 = 7.0266 < 9.1346] w=0.2847 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)I50.CB) [> 4.0260 = 6.7100 < 8.7230] w=0.2847 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)R51.CB) [> 4.1781 = 6.9635 < 9.0526] w=0.2847 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)G52.CA) [> 3.8822 = 6.4703 < 8.4115] w=0.2847 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)L53.CB) [> 3.2582 = 5.4303 < 7.0593] w=0.2847 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)A113.CB) [> 2.9227 = 4.8712 < 6.3326] w=0.2802 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)V114.CB) [> 3.0054 = 5.0090 < 6.5117] w=0.2802 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)A113.CB) [> 4.0135 = 6.6891 < 8.6959] w=0.2802 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)Y115.CB) [> 3.4245 = 5.7075 < 7.4198] w=0.2802 to align # Constraint # added constraint: constraint((T0304)L69.CB, (T0304)L92.CB) [> 4.1243 = 6.8738 < 8.9359] w=0.2659 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)S106.CB) [> 3.8330 = 6.3883 < 8.3048] w=0.2659 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)S106.CB) [> 3.7019 = 6.1698 < 8.0207] w=0.2659 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)S106.CB) [> 1.8705 = 3.1175 < 4.0527] w=0.2659 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)R51.CB) [> 3.9835 = 6.6392 < 8.6310] w=0.2617 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)L44.CB) [> 3.9460 = 6.5766 < 8.5496] w=0.2617 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)A45.CB) [> 2.8319 = 4.7198 < 6.1357] w=0.2617 to align # Constraint # added constraint: constraint((T0304)Q87.CB, (T0304)C99.CB) [> 3.5152 = 5.8587 < 7.6163] w=0.2539 to align # Constraint # added constraint: constraint((T0304)R85.CB, (T0304)A101.CB) [> 2.4406 = 4.0676 < 5.2879] w=0.2539 to align # Constraint # added constraint: constraint((T0304)P84.CB, (T0304)K100.CB) [> 4.6654 = 7.7757 < 10.1084] w=0.2539 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)C99.CB) [> 3.3422 = 5.5704 < 7.2415] w=0.2511 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)T91.CB) [> 4.5414 = 7.5690 < 9.8397] w=0.2442 to align # Constraint # added constraint: constraint((T0304)L69.CB, (T0304)L97.CB) [> 4.0823 = 6.8038 < 8.8450] w=0.2418 to align # Constraint # added constraint: constraint((T0304)F66.CB, (T0304)C99.CB) [> 3.8796 = 6.4660 < 8.4057] w=0.2418 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)Y93.CB) [> 2.8339 = 4.7231 < 6.1400] w=0.2124 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)T91.CB) [> 4.1069 = 6.8448 < 8.8982] w=0.2124 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)Y93.CB) [> 3.0392 = 5.0654 < 6.5849] w=0.2124 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)T91.CB) [> 3.7054 = 6.1757 < 8.0285] w=0.2124 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)L92.CB) [> 3.9145 = 6.5242 < 8.4815] w=0.2124 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)V90.CB) [> 3.4345 = 5.7242 < 7.4414] w=0.2124 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)L92.CB) [> 4.6460 = 7.7433 < 10.0663] w=0.2124 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)V90.CB) [> 3.4720 = 5.7867 < 7.5227] w=0.2124 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)A45.CB) [> 4.2375 = 7.0626 < 9.1813] w=0.1894 to align # Constraint # added constraint: constraint((T0304)R85.CB, (T0304)S105.CB) [> 4.5360 = 7.5601 < 9.8281] w=0.1872 to align # Constraint # added constraint: constraint((T0304)M76.CB, (T0304)Y111.CB) [> 4.6338 = 7.7229 < 10.0398] w=0.1872 to align # Constraint # added constraint: constraint((T0304)L69.CB, (T0304)A113.CB) [> 2.9609 = 4.9348 < 6.4153] w=0.1872 to align # Constraint # added constraint: constraint((T0304)Q87.CB, (T0304)S105.CB) [> 4.7649 = 7.9416 < 10.3240] w=0.1872 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)A101.CB) [> 3.6963 = 6.1605 < 8.0086] w=0.1872 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)T103.CB) [> 3.9964 = 6.6607 < 8.6589] w=0.1872 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)L104.CB) [> 3.7382 = 6.2303 < 8.0994] w=0.1872 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)L104.CB) [> 3.4428 = 5.7379 < 7.4593] w=0.1872 to align # Constraint # added constraint: constraint((T0304)T98.CB, (T0304)V114.CB) [> 3.2905 = 5.4841 < 7.1294] w=0.1872 to align # Constraint # added constraint: constraint((T0304)C99.CB, (T0304)V114.CB) [> 4.7165 = 7.8608 < 10.2191] w=0.1872 to align # Constraint # added constraint: constraint((T0304)K100.CB, (T0304)L112.CB) [> 3.4923 = 5.8204 < 7.5666] w=0.1872 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)I50.CB) [> 3.2974 = 5.4957 < 7.1444] w=0.1864 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)G52.CA) [> 3.3800 = 5.6334 < 7.3234] w=0.1864 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)M76.CB) [> 4.0696 = 6.7827 < 8.8176] w=0.1800 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)L77.CB) [> 4.7141 = 7.8569 < 10.2139] w=0.1800 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)L69.CB) [> 4.0496 = 6.7493 < 8.7740] w=0.1800 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)M76.CB) [> 4.4665 = 7.4441 < 9.6773] w=0.1800 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)A48.CB) [> 4.7530 = 7.9216 < 10.2981] w=0.1800 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)I50.CB) [> 2.6621 = 4.4368 < 5.7679] w=0.1800 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)A65.CB) [> 3.4160 = 5.6933 < 7.4013] w=0.1800 to align # Constraint # added constraint: constraint((T0304)E37.CB, (T0304)F54.CB) [> 3.0378 = 5.0631 < 6.5820] w=0.1800 to align # Constraint # added constraint: constraint((T0304)N39.CB, (T0304)H61.CB) [> 4.4432 = 7.4053 < 9.6269] w=0.1800 to align # Constraint # added constraint: constraint((T0304)K100.CB, (T0304)V114.CB) [> 3.6146 = 6.0244 < 7.8317] w=0.1725 to align # Constraint # added constraint: constraint((T0304)K100.CB, (T0304)A113.CB) [> 3.5387 = 5.8978 < 7.6671] w=0.1725 to align # Constraint # added constraint: constraint((T0304)L92.CB, (T0304)A113.CB) [> 3.9653 = 6.6088 < 8.5914] w=0.1725 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)Y115.CB) [> 4.3051 = 7.1751 < 9.3276] w=0.1725 to align # Constraint # added constraint: constraint((T0304)H86.CB, (T0304)Y115.CB) [> 4.1695 = 6.9491 < 9.0339] w=0.1725 to align # Constraint # added constraint: constraint((T0304)E81.CB, (T0304)P118.CB) [> 4.7014 = 7.8357 < 10.1865] w=0.1725 to align # Constraint # added constraint: constraint((T0304)E81.CB, (T0304)T117.CB) [> 1.8844 = 3.1407 < 4.0830] w=0.1725 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)T117.CB) [> 3.9432 = 6.5719 < 8.5435] w=0.1725 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)G38.CA) [> 4.2384 = 7.0639 < 9.1831] w=0.1693 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)L41.CB) [> 3.6428 = 6.0713 < 7.8927] w=0.1693 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)G38.CA) [> 2.5922 = 4.3203 < 5.6164] w=0.1693 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)N39.CB) [> 2.8349 = 4.7248 < 6.1423] w=0.1693 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)R40.CB) [> 2.7952 = 4.6587 < 6.0563] w=0.1693 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)L41.CB) [> 4.2386 = 7.0643 < 9.1836] w=0.1693 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)L69.CB) [> 3.7341 = 6.2235 < 8.0906] w=0.1612 to align # Constraint # added constraint: constraint((T0304)Q36.CB, (T0304)D58.CB) [> 4.0542 = 6.7570 < 8.7840] w=0.1612 to align # Constraint # added constraint: constraint((T0304)R40.CB, (T0304)I50.CB) [> 3.0578 = 5.0963 < 6.6252] w=0.1612 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)L112.CB) [> 4.6710 = 7.7850 < 10.1205] w=0.1609 to align # Constraint # added constraint: constraint((T0304)E37.CB, (T0304)L73.CB) [> 4.6294 = 7.7158 < 10.0305] w=0.1599 to align # Constraint # added constraint: constraint((T0304)G21.CA, (T0304)N39.CB) [> 4.0289 = 6.7148 < 8.7292] w=0.1599 to align # Constraint # added constraint: constraint((T0304)W20.CB, (T0304)R40.CB) [> 3.8674 = 6.4457 < 8.3794] w=0.1599 to align # Constraint # added constraint: constraint((T0304)W20.CB, (T0304)E37.CB) [> 3.5298 = 5.8831 < 7.6480] w=0.1599 to align # Constraint # added constraint: constraint((T0304)W20.CB, (T0304)Q36.CB) [> 4.5810 = 7.6350 < 9.9254] w=0.1599 to align # Constraint # added constraint: constraint((T0304)D46.CB, (T0304)A57.CB) [> 3.1901 = 5.3168 < 6.9119] w=0.1599 to align # Constraint # added constraint: constraint((T0304)A45.CB, (T0304)F66.CB) [> 4.3743 = 7.2905 < 9.4776] w=0.1599 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)L68.CB) [> 4.2669 = 7.1115 < 9.2450] w=0.1599 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)A65.CB) [> 2.1480 = 3.5799 < 4.6539] w=0.1599 to align # Constraint # added constraint: constraint((T0304)L41.CB, (T0304)Y60.CB) [> 4.7557 = 7.9262 < 10.3041] w=0.1599 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)A65.CB) [> 4.4375 = 7.3959 < 9.6147] w=0.1599 to align # Constraint # added constraint: constraint((T0304)Y43.CB, (T0304)A65.CB) [> 4.5805 = 7.6342 < 9.9244] w=0.1599 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)Y60.CB) [> 2.0917 = 3.4862 < 4.5320] w=0.1599 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)V110.CB) [> 2.9385 = 4.8975 < 6.3667] w=0.1579 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)H88.CB) [> 3.8166 = 6.3610 < 8.2693] w=0.1365 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)L92.CB) [> 4.0686 = 6.7811 < 8.8154] w=0.1365 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)T91.CB) [> 3.0446 = 5.0743 < 6.5966] w=0.1365 to align # Constraint # added constraint: constraint((T0304)T25.CB, (T0304)V90.CB) [> 4.4678 = 7.4464 < 9.6803] w=0.1365 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)L92.CB) [> 2.8670 = 4.7784 < 6.2119] w=0.1365 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)T91.CB) [> 4.3573 = 7.2621 < 9.4407] w=0.1365 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)V90.CB) [> 3.6418 = 6.0697 < 7.8906] w=0.1365 to align # Constraint # added constraint: constraint((T0304)L22.CB, (T0304)Y93.CB) [> 3.5515 = 5.9191 < 7.6949] w=0.1365 to align # Constraint # added constraint: constraint((T0304)L22.CB, (T0304)L92.CB) [> 3.4911 = 5.8185 < 7.5641] w=0.1365 to align # Constraint # added constraint: constraint((T0304)W19.CB, (T0304)K95.CB) [> 3.6528 = 6.0879 < 7.9143] w=0.1365 to align # Constraint # added constraint: constraint((T0304)W19.CB, (T0304)Y93.CB) [> 3.2329 = 5.3882 < 7.0046] w=0.1365 to align # Constraint # added constraint: constraint((T0304)R17.CB, (T0304)K95.CB) [> 2.4118 = 4.0196 < 5.2255] w=0.1365 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)T89.CB) [> 4.1988 = 6.9980 < 9.0975] w=0.1365 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)V90.CB) [> 3.3802 = 5.6337 < 7.3238] w=0.1365 to align # Constraint # added constraint: constraint((T0304)T27.CB, (T0304)T91.CB) [> 4.2470 = 7.0783 < 9.2018] w=0.1365 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)A65.CB) [> 2.7939 = 4.6564 < 6.0534] w=0.1365 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)F66.CB) [> 3.2785 = 5.4642 < 7.1034] w=0.1365 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)H88.CB) [> 3.4169 = 5.6948 < 7.4033] w=0.1365 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)T89.CB) [> 4.4432 = 7.4053 < 9.6269] w=0.1365 to align # Constraint # added constraint: constraint((T0304)F66.CB, (T0304)H88.CB) [> 3.6352 = 6.0586 < 7.8762] w=0.1365 to align # Constraint # added constraint: constraint((T0304)K95.CB, (T0304)Y115.CB) [> 3.7722 = 6.2870 < 8.1731] w=0.1248 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)V90.CB) [> 4.0430 = 6.7383 < 8.7598] w=0.1077 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)T89.CB) [> 4.1111 = 6.8518 < 8.9073] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)H88.CB) [> 3.7403 = 6.2339 < 8.1040] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L34.CB, (T0304)T89.CB) [> 2.9533 = 4.9222 < 6.3988] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)Q87.CB) [> 4.2522 = 7.0870 < 9.2131] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)H88.CB) [> 3.1360 = 5.2268 < 6.7948] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L41.CB, (T0304)T89.CB) [> 4.2878 = 7.1463 < 9.2903] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L44.CB, (T0304)Q72.CB) [> 4.1130 = 6.8550 < 8.9115] w=0.1077 to align # Constraint # added constraint: constraint((T0304)R47.CB, (T0304)L69.CB) [> 4.5491 = 7.5819 < 9.8565] w=0.1077 to align # Constraint # added constraint: constraint((T0304)R47.CB, (T0304)Q72.CB) [> 3.4249 = 5.7081 < 7.4205] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A48.CB, (T0304)A65.CB) [> 3.9700 = 6.6167 < 8.6017] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L22.CB, (T0304)R33.CB) [> 3.6622 = 6.1036 < 7.9347] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L22.CB, (T0304)L34.CB) [> 4.0844 = 6.8074 < 8.8496] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L22.CB, (T0304)L41.CB) [> 4.6473 = 7.7456 < 10.0692] w=0.1077 to align # Constraint # added constraint: constraint((T0304)P23.CB, (T0304)A32.CB) [> 4.3636 = 7.2727 < 9.4545] w=0.1077 to align # Constraint # added constraint: constraint((T0304)P23.CB, (T0304)R33.CB) [> 3.0209 = 5.0348 < 6.5452] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)R33.CB) [> 4.7535 = 7.9225 < 10.2992] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C24.CB, (T0304)A45.CB) [> 2.8670 = 4.7783 < 6.2119] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)A45.CB) [> 4.0340 = 6.7234 < 8.7404] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)A48.CB) [> 2.9798 = 4.9663 < 6.4562] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)Y93.CB) [> 4.7809 = 7.9682 < 10.3586] w=0.1077 to align # Constraint # added constraint: constraint((T0304)T27.CB, (T0304)Y60.CB) [> 4.2058 = 7.0096 < 9.1125] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)A59.CB) [> 3.6941 = 6.1568 < 8.0039] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)L62.CB) [> 4.6853 = 7.8089 < 10.1515] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)Y93.CB) [> 3.3409 = 5.5681 < 7.2386] w=0.1077 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)A94.CB) [> 3.0086 = 5.0143 < 6.5186] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)A59.CB) [> 4.4785 = 7.4641 < 9.7034] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)L62.CB) [> 3.4171 = 5.6952 < 7.4037] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)A65.CB) [> 3.5409 = 5.9015 < 7.6720] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)T91.CB) [> 3.8733 = 6.4556 < 8.3923] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)L92.CB) [> 4.2843 = 7.1405 < 9.2826] w=0.1077 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)A94.CB) [> 4.6455 = 7.7426 < 10.0654] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A32.CB, (T0304)T89.CB) [> 3.1127 = 5.1878 < 6.7441] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L73.CB, (T0304)P84.CB) [> 4.3193 = 7.1989 < 9.3586] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L73.CB, (T0304)V114.CB) [> 3.8948 = 6.4913 < 8.4387] w=0.1077 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)A113.CB) [> 3.9232 = 6.5387 < 8.5003] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)Y111.CB) [> 4.1109 = 6.8515 < 8.9069] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)L112.CB) [> 4.3126 = 7.1877 < 9.3440] w=0.1077 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)Y111.CB) [> 4.4995 = 7.4992 < 9.7489] w=0.1077 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)L112.CB) [> 2.8785 = 4.7975 < 6.2368] w=0.1077 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)A113.CB) [> 4.7648 = 7.9412 < 10.3236] w=0.1077 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)V114.CB) [> 4.0582 = 6.7637 < 8.7928] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L92.CB, (T0304)V110.CB) [> 4.3273 = 7.2121 < 9.3757] w=0.1077 to align # Constraint # added constraint: constraint((T0304)Y93.CB, (T0304)Y109.CB) [> 4.5921 = 7.6534 < 9.9494] w=0.1077 to align # Constraint # added constraint: constraint((T0304)Y93.CB, (T0304)V110.CB) [> 3.5435 = 5.9059 < 7.6776] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A94.CB, (T0304)C107.CB) [> 4.7783 = 7.9638 < 10.3529] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A94.CB, (T0304)D108.CB) [> 3.2974 = 5.4956 < 7.1443] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A94.CB, (T0304)Y109.CB) [> 3.1974 = 5.3290 < 6.9277] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A94.CB, (T0304)V110.CB) [> 4.4903 = 7.4838 < 9.7290] w=0.1077 to align # Constraint # added constraint: constraint((T0304)G96.CA, (T0304)D108.CB) [> 3.8906 = 6.4843 < 8.4296] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L97.CB, (T0304)C107.CB) [> 3.1773 = 5.2954 < 6.8841] w=0.1077 to align # Constraint # added constraint: constraint((T0304)A48.CB, (T0304)L68.CB) [> 4.1802 = 6.9670 < 9.0570] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L62.CB, (T0304)A94.CB) [> 4.2624 = 7.1039 < 9.2351] w=0.1077 to align # Constraint # added constraint: constraint((T0304)D63.CB, (T0304)L112.CB) [> 4.0556 = 6.7594 < 8.7872] w=0.1077 to align # Constraint # added constraint: constraint((T0304)D63.CB, (T0304)V110.CB) [> 3.9727 = 6.6212 < 8.6075] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L62.CB, (T0304)L112.CB) [> 3.9856 = 6.6426 < 8.6354] w=0.1077 to align # Constraint # added constraint: constraint((T0304)L62.CB, (T0304)V110.CB) [> 2.7520 = 4.5867 < 5.9628] w=0.1077 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)G80.CA) [> 3.0911 = 5.1519 < 6.6975] w=0.1047 to align # Constraint # added constraint: constraint((T0304)V35.CB, (T0304)T78.CB) [> 4.5839 = 7.6399 < 9.9318] w=0.1047 to align # Constraint # added constraint: constraint((T0304)E37.CB, (T0304)T78.CB) [> 4.6131 = 7.6885 < 9.9951] w=0.1047 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)I50.CB) [> 2.9251 = 4.8751 < 6.3377] w=0.1047 to align # Constraint # added constraint: constraint((T0304)V26.CB, (T0304)G52.CA) [> 4.3035 = 7.1725 < 9.3243] w=0.1047 to align # Constraint # added constraint: constraint((T0304)T27.CB, (T0304)I50.CB) [> 4.7531 = 7.9218 < 10.2983] w=0.1047 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)G49.CA) [> 3.3730 = 5.6217 < 7.3082] w=0.1047 to align # Constraint # added constraint: constraint((T0304)P28.CB, (T0304)I50.CB) [> 2.4791 = 4.1318 < 5.3713] w=0.1047 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)A48.CB) [> 2.4906 = 4.1511 < 5.3964] w=0.1047 to align # Constraint # added constraint: constraint((T0304)F30.CB, (T0304)I50.CB) [> 4.5495 = 7.5824 < 9.8572] w=0.1047 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)G49.CA) [> 2.9448 = 4.9080 < 6.3803] w=0.1047 to align # Constraint # added constraint: constraint((T0304)G31.CA, (T0304)A94.CB) [> 4.1762 = 6.9603 < 9.0484] w=0.1047 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)G49.CA) [> 3.2740 = 5.4566 < 7.0936] w=0.1047 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)S79.CB) [> 4.1054 = 6.8423 < 8.8950] w=0.1047 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)G80.CA) [> 2.9597 = 4.9328 < 6.4127] w=0.1047 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)T91.CB) [> 3.1387 = 5.2311 < 6.8005] w=0.1047 to align # Constraint # added constraint: constraint((T0304)R33.CB, (T0304)L104.CB) [> 4.2942 = 7.1570 < 9.3042] w=0.1047 to align # Constraint # added constraint: constraint((T0304)T78.CB, (T0304)L104.CB) [> 4.1871 = 6.9786 < 9.0721] w=0.1047 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)T103.CB) [> 4.0890 = 6.8150 < 8.8595] w=0.1047 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)L104.CB) [> 2.9353 = 4.8922 < 6.3598] w=0.1047 to align # Constraint # added constraint: constraint((T0304)G80.CA, (T0304)S105.CB) [> 2.5457 = 4.2429 < 5.5157] w=0.1047 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)L104.CB) [> 4.3470 = 7.2450 < 9.4185] w=0.1047 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)C107.CB) [> 4.5083 = 7.5138 < 9.7680] w=0.1047 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)L104.CB) [> 3.3612 = 5.6020 < 7.2826] w=0.1047 to align # Constraint # added constraint: constraint((T0304)L73.CB, (T0304)C107.CB) [> 3.4930 = 5.8216 < 7.5681] w=0.1047 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)F54.CB) [> 4.1668 = 6.9447 < 9.0281] w=0.0817 to align # Constraint # added constraint: constraint((T0304)P84.CB, (T0304)V114.CB) [> 4.3674 = 7.2790 < 9.4627] w=0.0532 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)S106.CB) [> 4.6121 = 7.6868 < 9.9929] w=0.0532 to align # Constraint # added constraint: constraint((T0304)H42.CB, (T0304)D102.CB) [> 3.2367 = 5.3945 < 7.0128] w=0.0532 to align # Constraint # added constraint: constraint((T0304)L41.CB, (T0304)S106.CB) [> 4.1394 = 6.8990 < 8.9687] w=0.0532 to align # Constraint # added constraint: constraint((T0304)G38.CA, (T0304)S106.CB) [> 2.2826 = 3.8043 < 4.9456] w=0.0532 to align # Constraint # added constraint: constraint((T0304)E37.CB, (T0304)C107.CB) [> 2.9282 = 4.8804 < 6.3445] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T8.CB, (T0304)R17.CB) [> 4.2991 = 7.1652 < 9.3147] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)Y109.CB) [> 3.0326 = 5.0543 < 6.5705] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)D108.CB) [> 4.2156 = 7.0261 < 9.1339] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T91.CB, (T0304)C107.CB) [> 4.3738 = 7.2896 < 9.4765] w=0.0532 to align # Constraint # added constraint: constraint((T0304)V90.CB, (T0304)Y109.CB) [> 3.9267 = 6.5446 < 8.5080] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)Y111.CB) [> 2.8641 = 4.7736 < 6.2056] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)V110.CB) [> 3.9403 = 6.5672 < 8.5373] w=0.0532 to align # Constraint # added constraint: constraint((T0304)T89.CB, (T0304)Y109.CB) [> 3.5087 = 5.8478 < 7.6021] w=0.0532 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)Y111.CB) [> 4.5082 = 7.5137 < 9.7678] w=0.0532 to align # Constraint # added constraint: constraint((T0304)R85.CB, (T0304)V114.CB) [> 3.7766 = 6.2944 < 8.1827] w=0.0532 to align # Constraint # added constraint: constraint((T0304)H88.CB, (T0304)V110.CB) [> 4.7700 = 7.9500 < 10.3351] w=0.0532 to align # Constraint # added constraint: constraint((T0304)C29.CB, (T0304)F66.CB) [> 4.2401 = 7.0668 < 9.1868] w=0.0455 to align # Constraint # added constraint: constraint((T0304)L10.CB, (T0304)G96.CA) [> 3.9616 = 6.6027 < 8.5835] w=0.0455 to align # Constraint # added constraint: constraint((T0304)L10.CB, (T0304)K95.CB) [> 4.7380 = 7.8967 < 10.2657] w=0.0455 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0304/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0304/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 45 < previous residue 122 in servers/POMYSL_TS4.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C99.CA and (T0304)L104.CA only 0.000 apart, marking (T0304)L104.CA as missing WARNING: atoms too close: (T0304)K100.CA and (T0304)S105.CA only 0.000 apart, marking (T0304)S105.CA as missing WARNING: atoms too close: (T0304)A101.CA and (T0304)S106.CA only 0.000 apart, marking (T0304)S106.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)P6.O and (T0304)G7.N only 0.000 apart, marking (T0304)G7.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C24.O and (T0304)T25.N only 0.000 apart, marking (T0304)T25.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 253 model score 1.9870 model score 1.8484 model score 1.6074 model score 1.6638 model score 1.6852 model score 1.5331 model score 1.3759 model score 1.3759 model score 1.5837 model score 1.5837 model score 2.1247 model score 1.3883 model score 2.0323 model score 2.0463 model score 1.8549 model score 1.0966 model score 1.8546 model score 1.2985 model score 2.4032 model score 2.1203 model score 1.0966 model score 1.2985 model score 1.2585 model score 1.1420 model score 1.1136 model score 1.8407 model score 1.5338 model score 1.7061 model score 1.8574 model score 1.8365 model score 1.7639 model score 1.7936 model score 1.8202 model score 1.6390 model score 1.8564 model score 1.8981 model score 1.4886 model score 1.6755 model score 1.7457 model score 2.1070 model score 2.1952 model score 1.2794 model score 1.2793 model score 1.2794 model score 1.2794 model score 1.2795 model score 1.6390 model score 1.7086 model score 1.6206 model score 1.5056 model score 2.0600 model score 1.8981 model score 1.4985 model score 1.8564 model score 1.7936 model score 1.6390 model score 1.7850 model score 1.9148 model score 1.5651 model score 2.2418 model score 2.0133 model score 1.2800 model score 1.2771 model score 1.2796 model score 1.2789 model score 1.2797 model score 1.2800 model score 1.2771 model score 1.2796 model score 1.2771 model score 1.2789 model score 1.9407 model score 1.7801 model score 1.8598 model score 2.3560 model score 1.6629 model score 1.6161 model score 2.0684 model score 1.4496 model score 2.1902 model score 1.8968 model score 1.2794 model score 1.2795 model score 1.2780 model score 1.2771 model score 1.2793 model score 1.2958 model score 1.4985 model score 1.6582 model score 1.8081 model score 2.0154 model score 2.0526 model score 1.8884 model score 1.9390 model score 1.3762 model score 2.0836 model score 2.5926 model score 2.7106 model score 2.6772 model score 2.0857 model score 1.6769 model score 1.5106 model score 1.8517 model score 1.7149 model score 1.7872 model score 1.3394 model score 1.0727 model score 1.6049 model score 1.5726 model score 1.2771 model score 1.3341 model score 1.5349 model score 1.3655 model score 1.6672 model score 1.8297 model score 1.1740 model score 1.4990 model score 1.4063 model score 1.0683 model score 1.3927 model score 2.0038 model score 1.7482 model score 1.7814 model score 2.1016 model score 1.6230 model score 2.0403 model score 1.5719 model score 1.5800 model score 1.5432 model score 1.5934 model score 1.7478 model score 1.5974 model score 2.2070 model score 1.7645 model score 2.1845 model score 2.1858 model score 2.0770 model score 1.7310 model score 1.9415 model score 1.2340 model score 1.3789 model score 1.3623 model score 1.7918 model score 1.5400 model score 1.7308 model score 1.5610 model score 1.7306 model score 1.2340 model score 1.2697 model score 1.2689 model score 1.6226 model score 1.3657 model score 1.3557 model score 2.5956 model score 2.3183 model score 1.7896 model score 2.0874 model score 1.2251 model score 1.8406 model score 1.9856 model score 1.4706 model score 2.0228 model score 1.1991 model score 1.8376 model score 1.9728 model score 1.4027 model score 2.1367 model score 1.4614 model score 1.2697 model score 1.2689 model score 1.3657 model score 1.2390 model score 1.2794 model score 1.2760 model score 1.2790 model score 1.2771 model score 1.2786 model score 1.2798 model score 1.2783 model score 1.2771 model score 1.2771 model score 1.2790 model score 2.0453 model score 1.2895 model score 1.3749 model score 2.0516 model score 1.6388 model score 1.8499 model score 1.8800 model score 1.6790 model score 1.7760 model score 1.9959 model score 1.7950 model score 1.8800 model score 1.8053 model score 1.6299 model score 1.1708 model score 1.9550 model score 2.4555 model score 2.2616 model score 2.0045 model score 2.1269 model score 1.2771 model score 1.2771 model score 1.2784 model score 1.2771 model score 1.2771 model score 1.0461 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1086 model score 0.9617 model score 1.1600 model score 0.9504 model score 1.0352 model score 1.5713 model score 1.7413 model score 1.2799 model score 1.2771 model score 1.2771 model score 1.2790 model score 1.2771 model score 1.8910 model score 1.8538 model score 1.7482 model score 1.6881 model score 2.1699 model score 1.7053 model score 2.0561 model score 1.7552 model score 1.8212 model score 2.0646 model score 1.6307 model score 1.7158 model score 1.7560 model score 1.4977 model score 1.8173 model score 2.0900 model score 2.1955 model score 2.1246 model score 2.0999 model score 2.0910 model score 1.7693 model score 2.0038 model score 1.8519 model score 1.9881 model score 2.0239 model score 2.1080 model score 1.4701 model score 1.2628 weight: 0.4700 eval: 1.9870 min: 0.9504 max: 2.7106 weight: 0.5408 eval: 1.8484 min: 0.9504 max: 2.7106 weight: 0.6641 eval: 1.6074 min: 0.9504 max: 2.7106 weight: 0.6352 eval: 1.6638 min: 0.9504 max: 2.7106 weight: 0.6243 eval: 1.6852 min: 0.9504 max: 2.7106 weight: 0.7020 eval: 1.5331 min: 0.9504 max: 2.7106 weight: 0.7824 eval: 1.3759 min: 0.9504 max: 2.7106 weight: 0.7824 eval: 1.3759 min: 0.9504 max: 2.7106 weight: 0.6762 eval: 1.5837 min: 0.9504 max: 2.7106 weight: 0.6762 eval: 1.5837 min: 0.9504 max: 2.7106 weight: 0.3996 eval: 2.1247 min: 0.9504 max: 2.7106 weight: 0.7761 eval: 1.3883 min: 0.9504 max: 2.7106 weight: 0.4468 eval: 2.0323 min: 0.9504 max: 2.7106 weight: 0.4397 eval: 2.0463 min: 0.9504 max: 2.7106 weight: 0.5375 eval: 1.8549 min: 0.9504 max: 2.7106 weight: 0.9252 eval: 1.0966 min: 0.9504 max: 2.7106 weight: 0.5377 eval: 1.8546 min: 0.9504 max: 2.7106 weight: 0.8220 eval: 1.2985 min: 0.9504 max: 2.7106 weight: 0.2572 eval: 2.4032 min: 0.9504 max: 2.7106 weight: 0.4018 eval: 2.1203 min: 0.9504 max: 2.7106 weight: 0.9252 eval: 1.0966 min: 0.9504 max: 2.7106 weight: 0.8220 eval: 1.2985 min: 0.9504 max: 2.7106 weight: 0.8424 eval: 1.2585 min: 0.9504 max: 2.7106 weight: 0.9020 eval: 1.1420 min: 0.9504 max: 2.7106 weight: 0.9166 eval: 1.1136 min: 0.9504 max: 2.7106 weight: 0.5448 eval: 1.8407 min: 0.9504 max: 2.7106 weight: 0.7017 eval: 1.5338 min: 0.9504 max: 2.7106 weight: 0.6136 eval: 1.7061 min: 0.9504 max: 2.7106 weight: 0.5362 eval: 1.8574 min: 0.9504 max: 2.7106 weight: 0.5469 eval: 1.8365 min: 0.9504 max: 2.7106 weight: 0.5840 eval: 1.7639 min: 0.9504 max: 2.7106 weight: 0.5688 eval: 1.7936 min: 0.9504 max: 2.7106 weight: 0.5553 eval: 1.8202 min: 0.9504 max: 2.7106 weight: 0.6479 eval: 1.6390 min: 0.9504 max: 2.7106 weight: 0.5367 eval: 1.8564 min: 0.9504 max: 2.7106 weight: 0.5154 eval: 1.8981 min: 0.9504 max: 2.7106 weight: 0.7248 eval: 1.4886 min: 0.9504 max: 2.7106 weight: 0.6292 eval: 1.6755 min: 0.9504 max: 2.7106 weight: 0.5934 eval: 1.7457 min: 0.9504 max: 2.7106 weight: 0.4086 eval: 2.1070 min: 0.9504 max: 2.7106 weight: 0.3635 eval: 2.1952 min: 0.9504 max: 2.7106 weight: 0.8318 eval: 1.2794 min: 0.9504 max: 2.7106 weight: 0.8318 eval: 1.2793 min: 0.9504 max: 2.7106 weight: 0.8317 eval: 1.2794 min: 0.9504 max: 2.7106 weight: 0.8317 eval: 1.2794 min: 0.9504 max: 2.7106 weight: 0.8317 eval: 1.2795 min: 0.9504 max: 2.7106 weight: 0.6479 eval: 1.6390 min: 0.9504 max: 2.7106 weight: 0.6123 eval: 1.7086 min: 0.9504 max: 2.7106 weight: 0.6573 eval: 1.6206 min: 0.9504 max: 2.7106 weight: 0.7161 eval: 1.5056 min: 0.9504 max: 2.7106 weight: 0.4326 eval: 2.0600 min: 0.9504 max: 2.7106 weight: 0.5154 eval: 1.8981 min: 0.9504 max: 2.7106 weight: 0.7198 eval: 1.4985 min: 0.9504 max: 2.7106 weight: 0.5367 eval: 1.8564 min: 0.9504 max: 2.7106 weight: 0.5688 eval: 1.7936 min: 0.9504 max: 2.7106 weight: 0.6479 eval: 1.6390 min: 0.9504 max: 2.7106 weight: 0.5733 eval: 1.7850 min: 0.9504 max: 2.7106 weight: 0.5069 eval: 1.9148 min: 0.9504 max: 2.7106 weight: 0.6857 eval: 1.5651 min: 0.9504 max: 2.7106 weight: 0.3397 eval: 2.2418 min: 0.9504 max: 2.7106 weight: 0.4565 eval: 2.0133 min: 0.9504 max: 2.7106 weight: 0.8315 eval: 1.2800 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8316 eval: 1.2796 min: 0.9504 max: 2.7106 weight: 0.8320 eval: 1.2789 min: 0.9504 max: 2.7106 weight: 0.8316 eval: 1.2797 min: 0.9504 max: 2.7106 weight: 0.8315 eval: 1.2800 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8316 eval: 1.2796 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8320 eval: 1.2789 min: 0.9504 max: 2.7106 weight: 0.4936 eval: 1.9407 min: 0.9504 max: 2.7106 weight: 0.5757 eval: 1.7801 min: 0.9504 max: 2.7106 weight: 0.5350 eval: 1.8598 min: 0.9504 max: 2.7106 weight: 0.2813 eval: 2.3560 min: 0.9504 max: 2.7106 weight: 0.6357 eval: 1.6629 min: 0.9504 max: 2.7106 weight: 0.6596 eval: 1.6161 min: 0.9504 max: 2.7106 weight: 0.4283 eval: 2.0684 min: 0.9504 max: 2.7106 weight: 0.7447 eval: 1.4496 min: 0.9504 max: 2.7106 weight: 0.3661 eval: 2.1902 min: 0.9504 max: 2.7106 weight: 0.5161 eval: 1.8968 min: 0.9504 max: 2.7106 weight: 0.8318 eval: 1.2794 min: 0.9504 max: 2.7106 weight: 0.8317 eval: 1.2795 min: 0.9504 max: 2.7106 weight: 0.8325 eval: 1.2780 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8318 eval: 1.2793 min: 0.9504 max: 2.7106 weight: 0.8234 eval: 1.2958 min: 0.9504 max: 2.7106 weight: 0.7198 eval: 1.4985 min: 0.9504 max: 2.7106 weight: 0.6381 eval: 1.6582 min: 0.9504 max: 2.7106 weight: 0.5614 eval: 1.8081 min: 0.9504 max: 2.7106 weight: 0.4554 eval: 2.0154 min: 0.9504 max: 2.7106 weight: 0.4364 eval: 2.0526 min: 0.9504 max: 2.7106 weight: 0.5204 eval: 1.8884 min: 0.9504 max: 2.7106 weight: 0.4945 eval: 1.9390 min: 0.9504 max: 2.7106 weight: 0.7823 eval: 1.3762 min: 0.9504 max: 2.7106 weight: 0.4206 eval: 2.0836 min: 0.9504 max: 2.7106 weight: 0.1603 eval: 2.5926 min: 0.9504 max: 2.7106 weight: 0.1000 eval: 2.7106 min: 0.9504 max: 2.7106 weight: 0.1171 eval: 2.6772 min: 0.9504 max: 2.7106 weight: 0.4195 eval: 2.0857 min: 0.9504 max: 2.7106 weight: 0.6285 eval: 1.6769 min: 0.9504 max: 2.7106 weight: 0.7136 eval: 1.5106 min: 0.9504 max: 2.7106 weight: 0.5391 eval: 1.8517 min: 0.9504 max: 2.7106 weight: 0.6091 eval: 1.7149 min: 0.9504 max: 2.7106 weight: 0.5721 eval: 1.7872 min: 0.9504 max: 2.7106 weight: 0.8011 eval: 1.3394 min: 0.9504 max: 2.7106 weight: 0.9375 eval: 1.0727 min: 0.9504 max: 2.7106 weight: 0.6653 eval: 1.6049 min: 0.9504 max: 2.7106 weight: 0.6819 eval: 1.5726 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8038 eval: 1.3341 min: 0.9504 max: 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weight: 0.5923 eval: 1.7478 min: 0.9504 max: 2.7106 weight: 0.6692 eval: 1.5974 min: 0.9504 max: 2.7106 weight: 0.3575 eval: 2.2070 min: 0.9504 max: 2.7106 weight: 0.5837 eval: 1.7645 min: 0.9504 max: 2.7106 weight: 0.3690 eval: 2.1845 min: 0.9504 max: 2.7106 weight: 0.3683 eval: 2.1858 min: 0.9504 max: 2.7106 weight: 0.4240 eval: 2.0770 min: 0.9504 max: 2.7106 weight: 0.6009 eval: 1.7310 min: 0.9504 max: 2.7106 weight: 0.4932 eval: 1.9415 min: 0.9504 max: 2.7106 weight: 0.8550 eval: 1.2340 min: 0.9504 max: 2.7106 weight: 0.7809 eval: 1.3789 min: 0.9504 max: 2.7106 weight: 0.7894 eval: 1.3623 min: 0.9504 max: 2.7106 weight: 0.5698 eval: 1.7918 min: 0.9504 max: 2.7106 weight: 0.6985 eval: 1.5400 min: 0.9504 max: 2.7106 weight: 0.6010 eval: 1.7308 min: 0.9504 max: 2.7106 weight: 0.6878 eval: 1.5610 min: 0.9504 max: 2.7106 weight: 0.6011 eval: 1.7306 min: 0.9504 max: 2.7106 weight: 0.8550 eval: 1.2340 min: 0.9504 max: 2.7106 weight: 0.8367 eval: 1.2697 min: 0.9504 max: 2.7106 weight: 0.8371 eval: 1.2689 min: 0.9504 max: 2.7106 weight: 0.6563 eval: 1.6226 min: 0.9504 max: 2.7106 weight: 0.7877 eval: 1.3657 min: 0.9504 max: 2.7106 weight: 0.7928 eval: 1.3557 min: 0.9504 max: 2.7106 weight: 0.1588 eval: 2.5956 min: 0.9504 max: 2.7106 weight: 0.3006 eval: 2.3183 min: 0.9504 max: 2.7106 weight: 0.5709 eval: 1.7896 min: 0.9504 max: 2.7106 weight: 0.4186 eval: 2.0874 min: 0.9504 max: 2.7106 weight: 0.8595 eval: 1.2251 min: 0.9504 max: 2.7106 weight: 0.5448 eval: 1.8406 min: 0.9504 max: 2.7106 weight: 0.4707 eval: 1.9856 min: 0.9504 max: 2.7106 weight: 0.7340 eval: 1.4706 min: 0.9504 max: 2.7106 weight: 0.4517 eval: 2.0228 min: 0.9504 max: 2.7106 weight: 0.8728 eval: 1.1991 min: 0.9504 max: 2.7106 weight: 0.5464 eval: 1.8376 min: 0.9504 max: 2.7106 weight: 0.4772 eval: 1.9728 min: 0.9504 max: 2.7106 weight: 0.7687 eval: 1.4027 min: 0.9504 max: 2.7106 weight: 0.3934 eval: 2.1367 min: 0.9504 max: 2.7106 weight: 0.7387 eval: 1.4614 min: 0.9504 max: 2.7106 weight: 0.8367 eval: 1.2697 min: 0.9504 max: 2.7106 weight: 0.8371 eval: 1.2689 min: 0.9504 max: 2.7106 weight: 0.7877 eval: 1.3657 min: 0.9504 max: 2.7106 weight: 0.8524 eval: 1.2390 min: 0.9504 max: 2.7106 weight: 0.8318 eval: 1.2794 min: 0.9504 max: 2.7106 weight: 0.8335 eval: 1.2760 min: 0.9504 max: 2.7106 weight: 0.8320 eval: 1.2790 min: 0.9504 max: 2.7106 weight: 0.8329 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8322 eval: 1.2786 min: 0.9504 max: 2.7106 weight: 0.8316 eval: 1.2798 min: 0.9504 max: 2.7106 weight: 0.8323 eval: 1.2783 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8320 eval: 1.2790 min: 0.9504 max: 2.7106 weight: 0.4401 eval: 2.0453 min: 0.9504 max: 2.7106 weight: 0.8266 eval: 1.2895 min: 0.9504 max: 2.7106 weight: 0.7829 eval: 1.3749 min: 0.9504 max: 2.7106 weight: 0.4370 eval: 2.0516 min: 0.9504 max: 2.7106 weight: 0.6480 eval: 1.6388 min: 0.9504 max: 2.7106 weight: 0.5401 eval: 1.8499 min: 0.9504 max: 2.7106 weight: 0.5247 eval: 1.8800 min: 0.9504 max: 2.7106 weight: 0.6275 eval: 1.6790 min: 0.9504 max: 2.7106 weight: 0.5779 eval: 1.7760 min: 0.9504 max: 2.7106 weight: 0.4654 eval: 1.9959 min: 0.9504 max: 2.7106 weight: 0.5681 eval: 1.7950 min: 0.9504 max: 2.7106 weight: 0.5247 eval: 1.8800 min: 0.9504 max: 2.7106 weight: 0.5628 eval: 1.8053 min: 0.9504 max: 2.7106 weight: 0.6525 eval: 1.6299 min: 0.9504 max: 2.7106 weight: 0.8873 eval: 1.1708 min: 0.9504 max: 2.7106 weight: 0.4863 eval: 1.9550 min: 0.9504 max: 2.7106 weight: 0.2304 eval: 2.4555 min: 0.9504 max: 2.7106 weight: 0.3296 eval: 2.2616 min: 0.9504 max: 2.7106 weight: 0.4610 eval: 2.0045 min: 0.9504 max: 2.7106 weight: 0.3984 eval: 2.1269 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8323 eval: 1.2784 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8329 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.9510 eval: 1.0461 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.9191 eval: 1.1086 min: 0.9504 max: 2.7106 weight: 0.9942 eval: 0.9617 min: 0.9504 max: 2.7106 weight: 0.8928 eval: 1.1600 min: 0.9504 max: 2.7106 weight: 1.0000 eval: 0.9504 min: 0.9504 max: 2.7106 weight: 0.9566 eval: 1.0352 min: 0.9504 max: 2.7106 weight: 0.6825 eval: 1.5713 min: 0.9504 max: 2.7106 weight: 0.5956 eval: 1.7413 min: 0.9504 max: 2.7106 weight: 0.8315 eval: 1.2799 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.8320 eval: 1.2790 min: 0.9504 max: 2.7106 weight: 0.8330 eval: 1.2771 min: 0.9504 max: 2.7106 weight: 0.5191 eval: 1.8910 min: 0.9504 max: 2.7106 weight: 0.5381 eval: 1.8538 min: 0.9504 max: 2.7106 weight: 0.5920 eval: 1.7482 min: 0.9504 max: 2.7106 weight: 0.6228 eval: 1.6881 min: 0.9504 max: 2.7106 weight: 0.3765 eval: 2.1699 min: 0.9504 max: 2.7106 weight: 0.6140 eval: 1.7053 min: 0.9504 max: 2.7106 weight: 0.4347 eval: 2.0561 min: 0.9504 max: 2.7106 weight: 0.5885 eval: 1.7552 min: 0.9504 max: 2.7106 weight: 0.5547 eval: 1.8212 min: 0.9504 max: 2.7106 weight: 0.4303 eval: 2.0646 min: 0.9504 max: 2.7106 weight: 0.6521 eval: 1.6307 min: 0.9504 max: 2.7106 weight: 0.6086 eval: 1.7158 min: 0.9504 max: 2.7106 weight: 0.5881 eval: 1.7560 min: 0.9504 max: 2.7106 weight: 0.7201 eval: 1.4977 min: 0.9504 max: 2.7106 weight: 0.5567 eval: 1.8173 min: 0.9504 max: 2.7106 weight: 0.4173 eval: 2.0900 min: 0.9504 max: 2.7106 weight: 0.3634 eval: 2.1955 min: 0.9504 max: 2.7106 weight: 0.3996 eval: 2.1246 min: 0.9504 max: 2.7106 weight: 0.4123 eval: 2.0999 min: 0.9504 max: 2.7106 weight: 0.4168 eval: 2.0910 min: 0.9504 max: 2.7106 weight: 0.5813 eval: 1.7693 min: 0.9504 max: 2.7106 weight: 0.4614 eval: 2.0038 min: 0.9504 max: 2.7106 weight: 0.5390 eval: 1.8519 min: 0.9504 max: 2.7106 weight: 0.4694 eval: 1.9881 min: 0.9504 max: 2.7106 weight: 0.4511 eval: 2.0239 min: 0.9504 max: 2.7106 weight: 0.4081 eval: 2.1080 min: 0.9504 max: 2.7106 weight: 0.7343 eval: 1.4701 min: 0.9504 max: 2.7106 weight: 0.8403 eval: 1.2628 min: 0.9504 max: 2.7106 Adding 5895 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -237.5014, CN propb: -237.5014 weights: 0.2768 constraints: 409 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 409 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 409 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5486 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5486 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5895 # command: