# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0303/ # command:# Making conformation for sequence T0303 numbered 1 through 224 Created new target T0303 from T0303.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0303/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0303//projects/compbio/experiments/protein-predict/casp7/T0303/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0303//projects/compbio/experiments/protein-predict/casp7/T0303/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0303/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0303/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)V174.CB) [> 3.7456 = 6.2427 < 8.1155] w=1.0000 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)F173.CB) [> 3.2707 = 5.4512 < 7.0866] w=1.0000 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)D176.CB) [> 2.8609 = 4.7682 < 6.1987] w=0.9931 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)L172.CB) [> 3.9853 = 6.6422 < 8.6348] w=0.9896 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)L172.CB) [> 2.9009 = 4.8349 < 6.2853] w=0.9896 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)V174.CB) [> 4.0192 = 6.6988 < 8.7084] w=0.9795 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)D176.CB) [> 3.0619 = 5.1032 < 6.6342] w=0.9792 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)G175.CA) [> 2.8737 = 4.7896 < 6.2265] w=0.9792 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)V174.CB) [> 3.5037 = 5.8395 < 7.5914] w=0.9792 to align # Constraint # added constraint: constraint((T0303)L104.CB, (T0303)L114.CB) [> 3.6796 = 6.1327 < 7.9725] w=0.9654 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)Y112.CB) [> 3.4531 = 5.7552 < 7.4818] w=0.9515 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)L114.CB) [> 3.2822 = 5.4703 < 7.1114] w=0.9515 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)A115.CB) [> 4.3500 = 7.2499 < 9.4249] w=0.9515 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)L114.CB) [> 4.0284 = 6.7140 < 8.7282] w=0.9515 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)A115.CB) [> 2.7502 = 4.5836 < 5.9587] w=0.9515 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)L172.CB) [> 4.3797 = 7.2994 < 9.4892] w=0.9480 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)I171.CB) [> 4.0782 = 6.7970 < 8.8361] w=0.9460 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)Q170.CB) [> 3.9671 = 6.6118 < 8.5954] w=0.9356 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)L107.CB) [> 3.5844 = 5.9739 < 7.7661] w=0.9308 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)I113.CB) [> 2.5194 = 4.1990 < 5.4587] w=0.9307 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)Y112.CB) [> 3.8641 = 6.4401 < 8.3721] w=0.9307 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)V100.CB) [> 3.2412 = 5.4020 < 7.0226] w=0.9307 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)I113.CB) [> 4.3515 = 7.2526 < 9.4283] w=0.9307 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)V116.CB) [> 4.1171 = 6.8619 < 8.9205] w=0.9307 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)A184.CB) [> 2.6466 = 4.4110 < 5.7343] w=0.9252 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)I171.CB) [> 2.8811 = 4.8019 < 6.2425] w=0.9252 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)I171.CB) [> 4.4045 = 7.3409 < 9.5431] w=0.9252 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)V191.CB) [> 3.2181 = 5.3635 < 6.9725] w=0.9137 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)V192.CB) [> 4.1749 = 6.9581 < 9.0456] w=0.9102 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)A115.CB) [> 3.8957 = 6.4928 < 8.4406] w=0.9099 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)F164.CB) [> 3.4182 = 5.6971 < 7.4062] w=0.9010 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)V117.CB) [> 3.6555 = 6.0925 < 7.9203] w=0.8995 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)G193.CA) [> 3.9272 = 6.5454 < 8.5090] w=0.8929 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)A190.CB) [> 3.0006 = 5.0009 < 6.5012] w=0.8927 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)T118.CB) [> 4.1210 = 6.8683 < 8.9287] w=0.8925 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)V192.CB) [> 4.1558 = 6.9263 < 9.0042] w=0.8825 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)A190.CB) [> 4.0933 = 6.8221 < 8.8688] w=0.8789 to align # Constraint # added constraint: constraint((T0303)F157.CB, (T0303)A183.CB) [> 3.4423 = 5.7372 < 7.4584] w=0.8767 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)V192.CB) [> 3.7016 = 6.1694 < 8.0202] w=0.8721 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)V192.CB) [> 3.0424 = 5.0708 < 6.5920] w=0.8686 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)L114.CB) [> 4.4021 = 7.3368 < 9.5378] w=0.8683 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)G193.CA) [> 3.2186 = 5.3643 < 6.9736] w=0.8651 to align # Constraint # added constraint: constraint((T0303)F157.CB, (T0303)A187.CB) [> 3.0321 = 5.0536 < 6.5696] w=0.8629 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)L166.CB) [> 2.9900 = 4.9833 < 6.4783] w=0.8628 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)V116.CB) [> 3.4799 = 5.7998 < 7.5397] w=0.8614 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)L194.CB) [> 3.3623 = 5.6038 < 7.2850] w=0.8582 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)Q170.CB) [> 2.8470 = 4.7451 < 6.1686] w=0.8525 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)T118.CB) [> 2.5563 = 4.2604 < 5.5385] w=0.8510 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)L160.CB) [> 3.5165 = 5.8609 < 7.6191] w=0.8490 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)Y112.CB) [> 3.6021 = 6.0035 < 7.8046] w=0.8469 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)I113.CB) [> 3.9247 = 6.5412 < 8.5035] w=0.8469 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)L96.CB) [> 3.7917 = 6.3195 < 8.2153] w=0.8413 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)L96.CB) [> 3.5048 = 5.8412 < 7.5936] w=0.8344 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)L194.CB) [> 3.6683 = 6.1139 < 7.9481] w=0.8340 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)F164.CB) [> 3.3987 = 5.6645 < 7.3638] w=0.8247 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)C189.CB) [> 3.1277 = 5.2128 < 6.7767] w=0.8233 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)C189.CB) [> 3.8400 = 6.3999 < 8.3199] w=0.8233 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)G193.CA) [> 3.9410 = 6.5683 < 8.5387] w=0.8201 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)L142.CB) [> 4.3671 = 7.2786 < 9.4621] w=0.8163 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)C189.CB) [> 3.0412 = 5.0687 < 6.5894] w=0.8143 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)L194.CB) [> 2.9452 = 4.9086 < 6.3812] w=0.8132 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)V174.CB) [> 2.9345 = 4.8908 < 6.3581] w=0.8129 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)G175.CA) [> 4.2620 = 7.1033 < 9.2343] w=0.8129 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)V174.CB) [> 3.8373 = 6.3954 < 8.3141] w=0.8129 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)G175.CA) [> 2.4235 = 4.0391 < 5.2508] w=0.8129 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)D176.CB) [> 3.7893 = 6.3155 < 8.2101] w=0.8129 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)V191.CB) [> 4.3985 = 7.3308 < 9.5301] w=0.8114 to align # Constraint # added constraint: constraint((T0303)P154.CB, (T0303)A183.CB) [> 3.4635 = 5.7725 < 7.5042] w=0.8074 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)R95.CB) [> 3.9660 = 6.6100 < 8.5930] w=0.8067 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)M141.CB) [> 2.9938 = 4.9897 < 6.4867] w=0.8059 to align # Constraint # added constraint: constraint((T0303)P168.CB, (T0303)G188.CA) [> 3.0168 = 5.0280 < 6.5364] w=0.7935 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)F138.CB) [> 3.4260 = 5.7100 < 7.4229] w=0.7901 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)F138.CB) [> 3.7373 = 6.2288 < 8.0974] w=0.7866 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)S94.CB) [> 3.1680 = 5.2800 < 6.8640] w=0.7789 to align # Constraint # added constraint: constraint((T0303)L96.CB, (T0303)F132.CB) [> 3.5001 = 5.8335 < 7.5836] w=0.7783 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)L142.CB) [> 3.9634 = 6.6057 < 8.5874] w=0.7782 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)L194.CB) [> 3.3345 = 5.5574 < 7.2247] w=0.7716 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)L142.CB) [> 2.9509 = 4.9181 < 6.3935] w=0.7678 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)P156.CB) [> 3.5905 = 5.9842 < 7.7795] w=0.7658 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)Y97.CB) [> 3.7362 = 6.2271 < 8.0952] w=0.7647 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)V116.CB) [> 3.2859 = 5.4766 < 7.1196] w=0.7643 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)A115.CB) [> 4.3067 = 7.1779 < 9.3313] w=0.7643 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)V125.CB) [> 3.8911 = 6.4852 < 8.4307] w=0.7603 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)A190.CB) [> 4.1297 = 6.8829 < 8.9477] w=0.7590 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)T195.CB) [> 4.0610 = 6.7683 < 8.7988] w=0.7543 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)G175.CA) [> 4.5801 = 7.6334 < 9.9235] w=0.7539 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)Y97.CB) [> 3.9259 = 6.5432 < 8.5061] w=0.7508 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)W211.CB) [> 3.0146 = 5.0243 < 6.5315] w=0.7506 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)S177.CB) [> 4.3199 = 7.1998 < 9.3598] w=0.7505 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)D176.CB) [> 4.5640 = 7.6067 < 9.8887] w=0.7505 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)I128.CB) [> 3.9186 = 6.5310 < 8.4903] w=0.7498 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)D180.CB) [> 3.4911 = 5.8184 < 7.5640] w=0.7485 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)E140.CB) [> 2.7613 = 4.6021 < 5.9828] w=0.7470 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)L142.CB) [> 3.9282 = 6.5470 < 8.5111] w=0.7470 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)M141.CB) [> 4.1503 = 6.9172 < 8.9923] w=0.7436 to align # Constraint # added constraint: constraint((T0303)P154.CB, (T0303)S186.CB) [> 2.9822 = 4.9704 < 6.4615] w=0.7347 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)T118.CB) [> 3.8934 = 6.4890 < 8.4357] w=0.7331 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)V117.CB) [> 3.8631 = 6.4385 < 8.3701] w=0.7331 to align # Constraint # added constraint: constraint((T0303)K151.CB, (T0303)D180.CB) [> 3.5431 = 5.9052 < 7.6768] w=0.7312 to align # Constraint # added constraint: constraint((T0303)P168.CB, (T0303)A187.CB) [> 3.4150 = 5.6916 < 7.3991] w=0.7311 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)V116.CB) [> 4.2290 = 7.0483 < 9.1628] w=0.7297 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)L114.CB) [> 4.2223 = 7.0371 < 9.1483] w=0.7247 to align # Constraint # added constraint: constraint((T0303)K169.CB, (T0303)G188.CA) [> 3.7518 = 6.2530 < 8.1288] w=0.7242 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)F173.CB) [> 4.6431 = 7.7385 < 10.0600] w=0.7228 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)E140.CB) [> 4.1365 = 6.8942 < 8.9624] w=0.7228 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)Q170.CB) [> 3.6840 = 6.1400 < 7.9820] w=0.7139 to align # Constraint # added constraint: constraint((T0303)F157.CB, (T0303)F173.CB) [> 4.1986 = 6.9977 < 9.0970] w=0.7070 to align # Constraint # added constraint: constraint((T0303)L142.CB, (T0303)L160.CB) [> 3.5185 = 5.8642 < 7.6234] w=0.7069 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)G143.CA) [> 3.2817 = 5.4694 < 7.1102] w=0.7054 to align # Constraint # added constraint: constraint((T0303)K151.CB, (T0303)A183.CB) [> 3.0295 = 5.0491 < 6.5639] w=0.7054 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)L166.CB) [> 3.2608 = 5.4347 < 7.0651] w=0.7000 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)L166.CB) [> 4.1410 = 6.9017 < 8.9722] w=0.6968 to align # Constraint # added constraint: constraint((T0303)L104.CB, (T0303)I134.CB) [> 3.9934 = 6.6557 < 8.6524] w=0.6966 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)V117.CB) [> 4.3828 = 7.3047 < 9.4961] w=0.6918 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)G144.CA) [> 4.2539 = 7.0898 < 9.2167] w=0.6916 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)L160.CB) [> 3.4351 = 5.7252 < 7.4427] w=0.6896 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)I212.CB) [> 4.2400 = 7.0667 < 9.1867] w=0.6883 to align # Constraint # added constraint: constraint((T0303)G193.CA, (T0303)I212.CB) [> 3.2203 = 5.3672 < 6.9773] w=0.6883 to align # Constraint # added constraint: constraint((T0303)G193.CA, (T0303)W211.CB) [> 3.8461 = 6.4102 < 8.3333] w=0.6882 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)F213.CB) [> 3.8201 = 6.3668 < 8.2769] w=0.6876 to align # Constraint # added constraint: constraint((T0303)V191.CB, (T0303)D210.CB) [> 3.3174 = 5.5290 < 7.1877] w=0.6806 to align # Constraint # added constraint: constraint((T0303)V100.CB, (T0303)F216.CB) [> 3.3455 = 5.5758 < 7.2486] w=0.6792 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)V191.CB) [> 2.9588 = 4.9313 < 6.4107] w=0.6760 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)K120.CB) [> 3.8523 = 6.4205 < 8.3467] w=0.6758 to align # Constraint # added constraint: constraint((T0303)L194.CB, (T0303)F213.CB) [> 3.4339 = 5.7231 < 7.4400] w=0.6737 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)F138.CB) [> 3.1346 = 5.2243 < 6.7915] w=0.6723 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)G143.CA) [> 4.0515 = 6.7526 < 8.7784] w=0.6708 to align # Constraint # added constraint: constraint((T0303)G193.CA, (T0303)F213.CB) [> 3.7844 = 6.3074 < 8.1996] w=0.6668 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)D210.CB) [> 3.9495 = 6.5824 < 8.5571] w=0.6660 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)K120.CB) [> 4.1291 = 6.8819 < 8.9465] w=0.6619 to align # Constraint # added constraint: constraint((T0303)V191.CB, (T0303)W211.CB) [> 4.1923 = 6.9872 < 9.0833] w=0.6585 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)Y112.CB) [> 4.0243 = 6.7071 < 8.7192] w=0.6584 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)Y97.CB) [> 3.6419 = 6.0698 < 7.8907] w=0.6577 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)G144.CA) [> 3.6740 = 6.1234 < 7.9604] w=0.6535 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)F157.CB) [> 3.8317 = 6.3862 < 8.3021] w=0.6500 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)S139.CB) [> 3.5802 = 5.9670 < 7.7572] w=0.6445 to align # Constraint # added constraint: constraint((T0303)P152.CB, (T0303)N179.CB) [> 3.3914 = 5.6523 < 7.3480] w=0.6411 to align # Constraint # added constraint: constraint((T0303)P152.CB, (T0303)F182.CB) [> 3.1919 = 5.3199 < 6.9158] w=0.6411 to align # Constraint # added constraint: constraint((T0303)T103.CB, (T0303)F216.CB) [> 2.8480 = 4.7467 < 6.1707] w=0.6396 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)V191.CB) [> 4.4629 = 7.4381 < 9.6696] w=0.6396 to align # Constraint # added constraint: constraint((T0303)N99.CB, (T0303)A217.CB) [> 2.8377 = 4.7295 < 6.1484] w=0.6377 to align # Constraint # added constraint: constraint((T0303)N99.CB, (T0303)F216.CB) [> 2.8428 = 4.7381 < 6.1595] w=0.6376 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)A183.CB) [> 3.5063 = 5.8438 < 7.5970] w=0.6342 to align # Constraint # added constraint: constraint((T0303)T103.CB, (T0303)I219.CB) [> 3.6719 = 6.1198 < 7.9557] w=0.6307 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)I171.CB) [> 4.1175 = 6.8625 < 8.9212] w=0.6307 to align # Constraint # added constraint: constraint((T0303)S94.CB, (T0303)I128.CB) [> 3.6636 = 6.1060 < 7.9378] w=0.6211 to align # Constraint # added constraint: constraint((T0303)P168.CB, (T0303)C189.CB) [> 3.1009 = 5.1682 < 6.7186] w=0.6168 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)V125.CB) [> 3.8859 = 6.4765 < 8.4194] w=0.6134 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)I150.CB) [> 3.5230 = 5.8717 < 7.6332] w=0.6133 to align # Constraint # added constraint: constraint((T0303)V125.CB, (T0303)M141.CB) [> 3.5749 = 5.9582 < 7.7456] w=0.6112 to align # Constraint # added constraint: constraint((T0303)F157.CB, (T0303)C189.CB) [> 3.9540 = 6.5901 < 8.5671] w=0.6099 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)S139.CB) [> 3.1286 = 5.2144 < 6.7787] w=0.6099 to align # Constraint # added constraint: constraint((T0303)P152.CB, (T0303)A183.CB) [> 2.7639 = 4.6066 < 5.9885] w=0.6064 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)G193.CA) [> 3.6859 = 6.1432 < 7.9861] w=0.5998 to align # Constraint # added constraint: constraint((T0303)F157.CB, (T0303)A184.CB) [> 3.7626 = 6.2710 < 8.1523] w=0.5995 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)K151.CB) [> 3.5544 = 5.9240 < 7.7012] w=0.5995 to align # Constraint # added constraint: constraint((T0303)A190.CB, (T0303)D210.CB) [> 3.1889 = 5.3149 < 6.9093] w=0.5968 to align # Constraint # added constraint: constraint((T0303)Y158.CB, (T0303)A187.CB) [> 3.8981 = 6.4969 < 8.4460] w=0.5941 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)I219.CB) [> 3.9004 = 6.5006 < 8.4508] w=0.5911 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)I128.CB) [> 4.1755 = 6.9592 < 9.0469] w=0.5835 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)P209.CB) [> 3.7351 = 6.2252 < 8.0927] w=0.5822 to align # Constraint # added constraint: constraint((T0303)H153.CB, (T0303)A183.CB) [> 3.9172 = 6.5286 < 8.4872] w=0.5822 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)G143.CA) [> 4.2997 = 7.1662 < 9.3160] w=0.5807 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)F173.CB) [> 4.4982 = 7.4970 < 9.7462] w=0.5807 to align # Constraint # added constraint: constraint((T0303)K151.CB, (T0303)N179.CB) [> 3.4028 = 5.6713 < 7.3727] w=0.5788 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)V116.CB) [> 4.4902 = 7.4837 < 9.7288] w=0.5772 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)A190.CB) [> 4.0922 = 6.8203 < 8.8664] w=0.5753 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)Y97.CB) [> 4.3199 = 7.1998 < 9.3597] w=0.5706 to align # Constraint # added constraint: constraint((T0303)T103.CB, (T0303)L220.CB) [> 3.6973 = 6.1622 < 8.0109] w=0.5683 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)S94.CB) [> 4.0028 = 6.6713 < 8.6727] w=0.5675 to align # Constraint # added constraint: constraint((T0303)E140.CB, (T0303)K163.CB) [> 3.3786 = 5.6309 < 7.3202] w=0.5648 to align # Constraint # added constraint: constraint((T0303)V191.CB, (T0303)P209.CB) [> 3.0365 = 5.0609 < 6.5791] w=0.5621 to align # Constraint # added constraint: constraint((T0303)T195.CB, (T0303)I212.CB) [> 3.7599 = 6.2664 < 8.1464] w=0.5601 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)L194.CB) [> 4.2835 = 7.1391 < 9.2808] w=0.5567 to align # Constraint # added constraint: constraint((T0303)G193.CA, (T0303)P209.CB) [> 2.9729 = 4.9549 < 6.4414] w=0.5551 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)Y97.CB) [> 4.3332 = 7.2220 < 9.3886] w=0.5498 to align # Constraint # added constraint: constraint((T0303)T195.CB, (T0303)D214.CB) [> 3.4274 = 5.7124 < 7.4261] w=0.5496 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)L160.CB) [> 4.0143 = 6.6905 < 8.6976] w=0.5476 to align # Constraint # added constraint: constraint((T0303)V125.CB, (T0303)G143.CA) [> 4.0059 = 6.6765 < 8.6795] w=0.5454 to align # Constraint # added constraint: constraint((T0303)L194.CB, (T0303)D214.CB) [> 4.4292 = 7.3819 < 9.5965] w=0.5406 to align # Constraint # added constraint: constraint((T0303)T195.CB, (T0303)F213.CB) [> 4.2234 = 7.0389 < 9.1506] w=0.5358 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)L137.CB) [> 3.7123 = 6.1871 < 8.0432] w=0.5336 to align # Constraint # added constraint: constraint((T0303)L129.CB, (T0303)M141.CB) [> 4.0369 = 6.7281 < 8.7466] w=0.5288 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)M141.CB) [> 4.4857 = 7.4761 < 9.7189] w=0.5287 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)A187.CB) [> 3.7139 = 6.1898 < 8.0467] w=0.5268 to align # Constraint # added constraint: constraint((T0303)E140.CB, (T0303)F164.CB) [> 3.7565 = 6.2609 < 8.1392] w=0.5232 to align # Constraint # added constraint: constraint((T0303)G144.CA, (T0303)P156.CB) [> 3.7110 = 6.1849 < 8.0404] w=0.5232 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)K151.CB) [> 4.1260 = 6.8766 < 8.9396] w=0.5232 to align # Constraint # added constraint: constraint((T0303)K101.CB, (T0303)I134.CB) [> 3.9988 = 6.6646 < 8.6640] w=0.5164 to align # Constraint # added constraint: constraint((T0303)L142.CB, (T0303)P156.CB) [> 3.4340 = 5.7234 < 7.4404] w=0.5163 to align # Constraint # added constraint: constraint((T0303)L194.CB, (T0303)I212.CB) [> 4.3929 = 7.3215 < 9.5179] w=0.5150 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)S207.CB) [> 3.6712 = 6.1187 < 7.9543] w=0.5129 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)N119.CB) [> 4.3877 = 7.3129 < 9.5067] w=0.5128 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)A187.CB) [> 3.3116 = 5.5193 < 7.1750] w=0.5094 to align # Constraint # added constraint: constraint((T0303)T122.CB, (T0303)G143.CA) [> 3.6150 = 6.0250 < 7.8325] w=0.5073 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)L96.CB) [> 4.4387 = 7.3979 < 9.6173] w=0.5058 to align # Constraint # added constraint: constraint((T0303)A190.CB, (T0303)W211.CB) [> 4.4307 = 7.3846 < 9.5999] w=0.5004 to align # Constraint # added constraint: constraint((T0303)L194.CB, (T0303)F216.CB) [> 3.9002 = 6.5003 < 8.4503] w=0.4990 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)F132.CB) [> 4.3458 = 7.2430 < 9.4159] w=0.4969 to align # Constraint # added constraint: constraint((T0303)L147.CB, (T0303)Y159.CB) [> 3.7424 = 6.2373 < 8.1085] w=0.4955 to align # Constraint # added constraint: constraint((T0303)N99.CB, (T0303)D215.CB) [> 3.3520 = 5.5867 < 7.2627] w=0.4921 to align # Constraint # added constraint: constraint((T0303)L147.CB, (T0303)P156.CB) [> 3.4341 = 5.7236 < 7.4406] w=0.4886 to align # Constraint # added constraint: constraint((T0303)A106.CB, (T0303)L220.CB) [> 3.3366 = 5.5610 < 7.2293] w=0.4852 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)Q145.CB) [> 3.4630 = 5.7717 < 7.5033] w=0.4794 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)Y196.CB) [> 3.4485 = 5.7476 < 7.4718] w=0.4769 to align # Constraint # added constraint: constraint((T0303)Q126.CB, (T0303)M141.CB) [> 3.9304 = 6.5506 < 8.5158] w=0.4726 to align # Constraint # added constraint: constraint((T0303)V192.CB, (T0303)I222.CB) [> 3.7423 = 6.2372 < 8.1083] w=0.4644 to align # Constraint # added constraint: constraint((T0303)K101.CB, (T0303)F132.CB) [> 3.9890 = 6.6483 < 8.6428] w=0.4589 to align # Constraint # added constraint: constraint((T0303)L142.CB, (T0303)K163.CB) [> 3.8827 = 6.4712 < 8.4126] w=0.4539 to align # Constraint # added constraint: constraint((T0303)Q178.CB, (T0303)I204.CB) [> 4.0114 = 6.6857 < 8.6914] w=0.4525 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)G143.CA) [> 4.2412 = 7.0686 < 9.1892] w=0.4505 to align # Constraint # added constraint: constraint((T0303)L129.CB, (T0303)F138.CB) [> 3.9649 = 6.6082 < 8.5906] w=0.4484 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)F132.CB) [> 3.8758 = 6.4597 < 8.3976] w=0.4443 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)E140.CB) [> 4.5134 = 7.5223 < 9.7789] w=0.4422 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)V191.CB) [> 4.2863 = 7.1438 < 9.2869] w=0.4401 to align # Constraint # added constraint: constraint((T0303)P152.CB, (T0303)D180.CB) [> 3.9703 = 6.6172 < 8.6024] w=0.4401 to align # Constraint # added constraint: constraint((T0303)K108.CB, (T0303)L137.CB) [> 3.7859 = 6.3098 < 8.2027] w=0.4387 to align # Constraint # added constraint: constraint((T0303)C161.CB, (T0303)A187.CB) [> 4.1282 = 6.8803 < 8.9444] w=0.4383 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)I134.CB) [> 4.1622 = 6.9370 < 9.0181] w=0.4367 to align # Constraint # added constraint: constraint((T0303)S139.CB, (T0303)F164.CB) [> 3.9952 = 6.6586 < 8.6562] w=0.4367 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)P209.CB) [> 3.0787 = 5.1311 < 6.6705] w=0.4367 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)L160.CB) [> 4.3904 = 7.3173 < 9.5125] w=0.4367 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)A184.CB) [> 4.4365 = 7.3941 < 9.6123] w=0.4367 to align # Constraint # added constraint: constraint((T0303)V100.CB, (T0303)I134.CB) [> 4.1960 = 6.9933 < 9.0913] w=0.4332 to align # Constraint # added constraint: constraint((T0303)L194.CB, (T0303)D215.CB) [> 4.0194 = 6.6990 < 8.7087] w=0.4297 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)C161.CB) [> 3.9805 = 6.6341 < 8.6243] w=0.4297 to align # Constraint # added constraint: constraint((T0303)L160.CB, (T0303)I171.CB) [> 4.3755 = 7.2925 < 9.4802] w=0.4262 to align # Constraint # added constraint: constraint((T0303)K169.CB, (T0303)C189.CB) [> 4.3147 = 7.1911 < 9.3484] w=0.4228 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)S94.CB) [> 3.5409 = 5.9015 < 7.6719] w=0.4226 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)F173.CB) [> 4.5549 = 7.5916 < 9.8690] w=0.4175 to align # Constraint # added constraint: constraint((T0303)K169.CB, (T0303)A190.CB) [> 4.3433 = 7.2388 < 9.4104] w=0.4159 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)V100.CB) [> 4.5578 = 7.5964 < 9.8753] w=0.4108 to align # Constraint # added constraint: constraint((T0303)P152.CB, (T0303)S186.CB) [> 4.0121 = 6.6868 < 8.6928] w=0.4089 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)D180.CB) [> 4.6219 = 7.7032 < 10.0141] w=0.4055 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)N179.CB) [> 4.0176 = 6.6959 < 8.7047] w=0.4055 to align # Constraint # added constraint: constraint((T0303)D180.CB, (T0303)G193.CA) [> 4.3722 = 7.2870 < 9.4731] w=0.4055 to align # Constraint # added constraint: constraint((T0303)A29.CB, (T0303)F78.CB) [> 3.2257 = 5.3763 < 6.9891] w=0.4014 to align # Constraint # added constraint: constraint((T0303)Y196.CB, (T0303)D215.CB) [> 3.8242 = 6.3736 < 8.2857] w=0.3951 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)F216.CB) [> 4.2001 = 7.0001 < 9.1002] w=0.3881 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)G188.CA) [> 3.7954 = 6.3256 < 8.2233] w=0.3881 to align # Constraint # added constraint: constraint((T0303)V59.CB, (T0303)L70.CB) [> 3.8874 = 6.4790 < 8.4227] w=0.3848 to align # Constraint # added constraint: constraint((T0303)T122.CB, (T0303)Q145.CB) [> 3.4335 = 5.7224 < 7.4392] w=0.3778 to align # Constraint # added constraint: constraint((T0303)K151.CB, (T0303)F182.CB) [> 4.0669 = 6.7782 < 8.8116] w=0.3743 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)E140.CB) [> 4.3857 = 7.3096 < 9.5025] w=0.3674 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)S177.CB) [> 4.5111 = 7.5184 < 9.7739] w=0.3674 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)F216.CB) [> 4.3537 = 7.2561 < 9.4329] w=0.3673 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)G143.CA) [> 4.4929 = 7.4881 < 9.7346] w=0.3673 to align # Constraint # added constraint: constraint((T0303)K120.CB, (T0303)G144.CA) [> 3.9021 = 6.5036 < 8.4546] w=0.3629 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)F216.CB) [> 4.3821 = 7.3035 < 9.4945] w=0.3624 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)A183.CB) [> 4.0574 = 6.7623 < 8.7909] w=0.3604 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)F173.CB) [> 4.5684 = 7.6140 < 9.8982] w=0.3586 to align # Constraint # added constraint: constraint((T0303)F213.CB, (T0303)I222.CB) [> 3.9550 = 6.5916 < 8.5691] w=0.3535 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)I219.CB) [> 4.3657 = 7.2761 < 9.4589] w=0.3535 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)I204.CB) [> 3.7552 = 6.2587 < 8.1363] w=0.3535 to align # Constraint # added constraint: constraint((T0303)L30.CB, (T0303)A58.CB) [> 3.8534 = 6.4223 < 8.3490] w=0.3473 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)G197.CA) [> 3.5070 = 5.8451 < 7.5986] w=0.3466 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)N199.CB) [> 3.3742 = 5.6236 < 7.3107] w=0.3416 to align # Constraint # added constraint: constraint((T0303)Y158.CB, (T0303)P168.CB) [> 4.0474 = 6.7457 < 8.7694] w=0.3396 to align # Constraint # added constraint: constraint((T0303)T14.CB, (T0303)V100.CB) [> 4.2008 = 7.0013 < 9.1017] w=0.3311 to align # Constraint # added constraint: constraint((T0303)S94.CB, (T0303)A131.CB) [> 3.4566 = 5.7610 < 7.4892] w=0.3188 to align # Constraint # added constraint: constraint((T0303)L96.CB, (T0303)I128.CB) [> 4.1325 = 6.8874 < 8.9536] w=0.3126 to align # Constraint # added constraint: constraint((T0303)H185.CB, (T0303)S207.CB) [> 3.4942 = 5.8237 < 7.5708] w=0.3119 to align # Constraint # added constraint: constraint((T0303)Q178.CB, (T0303)G193.CA) [> 4.3107 = 7.1845 < 9.3399] w=0.3107 to align # Constraint # added constraint: constraint((T0303)A184.CB, (T0303)P209.CB) [> 4.0864 = 6.8106 < 8.8538] w=0.3050 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)V117.CB) [> 4.4785 = 7.4641 < 9.7033] w=0.3049 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)Y198.CB) [> 3.8801 = 6.4668 < 8.4068] w=0.2980 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)F82.CB) [> 3.2130 = 5.3550 < 6.9615] w=0.2980 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)G111.CA) [> 4.4227 = 7.3712 < 9.5826] w=0.2924 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)G144.CA) [> 3.8884 = 6.4807 < 8.4249] w=0.2911 to align # Constraint # added constraint: constraint((T0303)H153.CB, (T0303)S186.CB) [> 4.2600 = 7.1000 < 9.2300] w=0.2911 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)Y86.CB) [> 3.1210 = 5.2016 < 6.7621] w=0.2900 to align # Constraint # added constraint: constraint((T0303)L6.CB, (T0303)S139.CB) [> 4.5921 = 7.6535 < 9.9495] w=0.2894 to align # Constraint # added constraint: constraint((T0303)G143.CA, (T0303)P156.CB) [> 3.8552 = 6.4254 < 8.3530] w=0.2842 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)L104.CB) [> 4.4233 = 7.3722 < 9.5838] w=0.2826 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)L54.CB) [> 4.1705 = 6.9508 < 9.0361] w=0.2807 to align # Constraint # added constraint: constraint((T0303)F182.CB, (T0303)S207.CB) [> 3.5470 = 5.9117 < 7.6852] w=0.2772 to align # Constraint # added constraint: constraint((T0303)Q3.CB, (T0303)Q170.CB) [> 3.7720 = 6.2866 < 8.1726] w=0.2772 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)Y85.CB) [> 3.0085 = 5.0142 < 6.5185] w=0.2767 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)Q145.CB) [> 3.8510 = 6.4184 < 8.3439] w=0.2760 to align # Constraint # added constraint: constraint((T0303)L96.CB, (T0303)A131.CB) [> 4.1479 = 6.9132 < 8.9872] w=0.2744 to align # Constraint # added constraint: constraint((T0303)V100.CB, (T0303)F132.CB) [> 4.1421 = 6.9035 < 8.9745] w=0.2738 to align # Constraint # added constraint: constraint((T0303)A29.CB, (T0303)Q81.CB) [> 3.4626 = 5.7710 < 7.5023] w=0.2717 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)L70.CB) [> 3.6920 = 6.1533 < 7.9993] w=0.2692 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)G144.CA) [> 4.4132 = 7.3554 < 9.5620] w=0.2691 to align # Constraint # added constraint: constraint((T0303)A29.CB, (T0303)F82.CB) [> 3.1608 = 5.2681 < 6.8485] w=0.2634 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)V43.CB) [> 3.4143 = 5.6904 < 7.3976] w=0.2634 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)Y196.CB) [> 3.6005 = 6.0008 < 7.8010] w=0.2585 to align # Constraint # added constraint: constraint((T0303)N27.CB, (T0303)V43.CB) [> 3.8105 = 6.3509 < 8.2561] w=0.2564 to align # Constraint # added constraint: constraint((T0303)K120.CB, (T0303)Q145.CB) [> 3.5389 = 5.8981 < 7.6676] w=0.2554 to align # Constraint # added constraint: constraint((T0303)P154.CB, (T0303)G188.CA) [> 4.4321 = 7.3869 < 9.6030] w=0.2530 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)G188.CA) [> 4.0605 = 6.7675 < 8.7978] w=0.2495 to align # Constraint # added constraint: constraint((T0303)D21.CB, (T0303)I93.CB) [> 3.1365 = 5.2276 < 6.7958] w=0.2446 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)S186.CB) [> 4.3984 = 7.3307 < 9.5300] w=0.2426 to align # Constraint # added constraint: constraint((T0303)Q170.CB, (T0303)G188.CA) [> 4.3105 = 7.1841 < 9.3393] w=0.2426 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)S186.CB) [> 4.4237 = 7.3729 < 9.5847] w=0.2426 to align # Constraint # added constraint: constraint((T0303)S177.CB, (T0303)N199.CB) [> 3.5592 = 5.9321 < 7.7117] w=0.2425 to align # Constraint # added constraint: constraint((T0303)K151.CB, (T0303)S177.CB) [> 4.5267 = 7.5446 < 9.8080] w=0.2410 to align # Constraint # added constraint: constraint((T0303)D21.CB, (T0303)L90.CB) [> 3.2152 = 5.3587 < 6.9663] w=0.2376 to align # Constraint # added constraint: constraint((T0303)S55.CB, (T0303)K79.CB) [> 3.3518 = 5.5863 < 7.2623] w=0.2363 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)S94.CB) [> 4.0738 = 6.7896 < 8.8265] w=0.2360 to align # Constraint # added constraint: constraint((T0303)H185.CB, (T0303)K208.CB) [> 3.7041 = 6.1735 < 8.0255] w=0.2357 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)G197.CA) [> 2.9386 = 4.8976 < 6.3670] w=0.2357 to align # Constraint # added constraint: constraint((T0303)W46.CB, (T0303)R57.CB) [> 3.7318 = 6.2197 < 8.0857] w=0.2356 to align # Constraint # added constraint: constraint((T0303)C91.CB, (T0303)I128.CB) [> 4.1018 = 6.8364 < 8.8873] w=0.2307 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)G83.CA) [> 4.0705 = 6.7841 < 8.8194] w=0.2287 to align # Constraint # added constraint: constraint((T0303)C161.CB, (T0303)Q170.CB) [> 4.5844 = 7.6406 < 9.9328] w=0.2287 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)S177.CB) [> 4.5270 = 7.5451 < 9.8086] w=0.2269 to align # Constraint # added constraint: constraint((T0303)I150.CB, (T0303)N179.CB) [> 4.4899 = 7.4832 < 9.7282] w=0.2253 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)E74.CB) [> 4.0925 = 6.8208 < 8.8670] w=0.2224 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)F78.CB) [> 4.2136 = 7.0226 < 9.1294] w=0.2218 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)L172.CB) [> 4.1361 = 6.8934 < 8.9615] w=0.2161 to align # Constraint # added constraint: constraint((T0303)V59.CB, (T0303)F75.CB) [> 3.4975 = 5.8291 < 7.5779] w=0.2156 to align # Constraint # added constraint: constraint((T0303)T195.CB, (T0303)I204.CB) [> 3.7185 = 6.1975 < 8.0567] w=0.2149 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)P156.CB) [> 4.6026 = 7.6711 < 9.9724] w=0.2079 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)G165.CA) [> 4.4566 = 7.4278 < 9.6561] w=0.2079 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)I134.CB) [> 3.4372 = 5.7287 < 7.4473] w=0.2079 to align # Constraint # added constraint: constraint((T0303)A51.CB, (T0303)N119.CB) [> 3.6311 = 6.0518 < 7.8673] w=0.2045 to align # Constraint # added constraint: constraint((T0303)N27.CB, (T0303)S39.CB) [> 4.0456 = 6.7427 < 8.7655] w=0.2010 to align # Constraint # added constraint: constraint((T0303)L22.CB, (T0303)Y86.CB) [> 3.9450 = 6.5750 < 8.5474] w=0.2005 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)N89.CB) [> 3.6950 = 6.1583 < 8.0058] w=0.1999 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)M141.CB) [> 4.2283 = 7.0472 < 9.1614] w=0.1961 to align # Constraint # added constraint: constraint((T0303)D32.CB, (T0303)Q81.CB) [> 4.0968 = 6.8280 < 8.8764] w=0.1941 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)L129.CB) [> 4.5472 = 7.5787 < 9.8523] w=0.1941 to align # Constraint # added constraint: constraint((T0303)Q178.CB, (T0303)N201.CB) [> 4.0091 = 6.6818 < 8.6864] w=0.1941 to align # Constraint # added constraint: constraint((T0303)G193.CA, (T0303)D210.CB) [> 3.7481 = 6.2469 < 8.1209] w=0.1891 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)F213.CB) [> 4.1760 = 6.9599 < 9.0479] w=0.1885 to align # Constraint # added constraint: constraint((T0303)L35.CB, (T0303)A58.CB) [> 3.6855 = 6.1426 < 7.9853] w=0.1871 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)I93.CB) [> 3.2685 = 5.4474 < 7.0816] w=0.1871 to align # Constraint # added constraint: constraint((T0303)P20.CB, (T0303)I93.CB) [> 3.8026 = 6.3377 < 8.2391] w=0.1871 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)A184.CB) [> 4.6470 = 7.7450 < 10.0685] w=0.1871 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)H136.CB) [> 4.1149 = 6.8581 < 8.9156] w=0.1871 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)F138.CB) [> 4.3542 = 7.2570 < 9.4341] w=0.1871 to align # Constraint # added constraint: constraint((T0303)D52.CB, (T0303)K79.CB) [> 3.6695 = 6.1159 < 7.9507] w=0.1871 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)V192.CB) [> 4.5242 = 7.5403 < 9.8024] w=0.1855 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)L104.CB) [> 4.3751 = 7.2918 < 9.4793] w=0.1837 to align # Constraint # added constraint: constraint((T0303)Q56.CB, (T0303)F75.CB) [> 3.5751 = 5.9586 < 7.7461] w=0.1809 to align # Constraint # added constraint: constraint((T0303)L96.CB, (T0303)G133.CA) [> 4.0156 = 6.6926 < 8.7004] w=0.1802 to align # Constraint # added constraint: constraint((T0303)D176.CB, (T0303)Y200.CB) [> 3.7751 = 6.2918 < 8.1794] w=0.1802 to align # Constraint # added constraint: constraint((T0303)L24.CB, (T0303)N89.CB) [> 4.0123 = 6.6872 < 8.6934] w=0.1797 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)V100.CB) [> 4.3548 = 7.2581 < 9.4355] w=0.1768 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)A187.CB) [> 4.5549 = 7.5915 < 9.8689] w=0.1767 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)A183.CB) [> 4.3266 = 7.2110 < 9.3743] w=0.1767 to align # Constraint # added constraint: constraint((T0303)C91.CB, (T0303)H124.CB) [> 3.7622 = 6.2702 < 8.1513] w=0.1735 to align # Constraint # added constraint: constraint((T0303)L19.CB, (T0303)I47.CB) [> 3.8155 = 6.3592 < 8.2670] w=0.1733 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)Y167.CB) [> 4.3856 = 7.3094 < 9.5022] w=0.1733 to align # Constraint # added constraint: constraint((T0303)A184.CB, (T0303)S207.CB) [> 3.5173 = 5.8622 < 7.6209] w=0.1733 to align # Constraint # added constraint: constraint((T0303)V43.CB, (T0303)A58.CB) [> 3.8299 = 6.3832 < 8.2981] w=0.1721 to align # Constraint # added constraint: constraint((T0303)G144.CA, (T0303)Y159.CB) [> 4.0851 = 6.8086 < 8.8511] w=0.1664 to align # Constraint # added constraint: constraint((T0303)W46.CB, (T0303)A58.CB) [> 3.6266 = 6.0443 < 7.8576] w=0.1663 to align # Constraint # added constraint: constraint((T0303)V116.CB, (T0303)L137.CB) [> 3.2427 = 5.4045 < 7.0259] w=0.1614 to align # Constraint # added constraint: constraint((T0303)S55.CB, (T0303)F78.CB) [> 3.2782 = 5.4637 < 7.1028] w=0.1601 to align # Constraint # added constraint: constraint((T0303)Y196.CB, (T0303)F216.CB) [> 4.0388 = 6.7313 < 8.7507] w=0.1594 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)R95.CB) [> 4.0375 = 6.7292 < 8.7480] w=0.1594 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)I93.CB) [> 4.0723 = 6.7872 < 8.8233] w=0.1594 to align # Constraint # added constraint: constraint((T0303)S25.CB, (T0303)F78.CB) [> 3.4429 = 5.7381 < 7.4595] w=0.1589 to align # Constraint # added constraint: constraint((T0303)D12.CB, (T0303)L22.CB) [> 4.1270 = 6.8783 < 8.9418] w=0.1583 to align # Constraint # added constraint: constraint((T0303)Y196.CB, (T0303)I212.CB) [> 4.0086 = 6.6811 < 8.6854] w=0.1560 to align # Constraint # added constraint: constraint((T0303)G48.CA, (T0303)S177.CB) [> 3.3606 = 5.6010 < 7.2813] w=0.1525 to align # Constraint # added constraint: constraint((T0303)V125.CB, (T0303)F138.CB) [> 4.1581 = 6.9302 < 9.0092] w=0.1525 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)H136.CB) [> 4.0006 = 6.6676 < 8.6679] w=0.1525 to align # Constraint # added constraint: constraint((T0303)I7.CB, (T0303)T223.CB) [> 4.3697 = 7.2828 < 9.4677] w=0.1525 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)I93.CB) [> 4.2513 = 7.0856 < 9.2113] w=0.1456 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)T223.CB) [> 3.7130 = 6.1883 < 8.0448] w=0.1456 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)L137.CB) [> 4.1023 = 6.8371 < 8.8883] w=0.1455 to align # Constraint # added constraint: constraint((T0303)D10.CB, (T0303)A183.CB) [> 4.4383 = 7.3972 < 9.6163] w=0.1421 to align # Constraint # added constraint: constraint((T0303)D60.CB, (T0303)L70.CB) [> 3.9610 = 6.6016 < 8.5821] w=0.1393 to align # Constraint # added constraint: constraint((T0303)A29.CB, (T0303)A58.CB) [> 3.5308 = 5.8847 < 7.6501] w=0.1393 to align # Constraint # added constraint: constraint((T0303)G144.CA, (T0303)A155.CB) [> 4.5063 = 7.5105 < 9.7636] w=0.1386 to align # Constraint # added constraint: constraint((T0303)G48.CA, (T0303)N119.CB) [> 3.7856 = 6.3092 < 8.2020] w=0.1386 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)W46.CB) [> 4.1210 = 6.8683 < 8.9288] w=0.1386 to align # Constraint # added constraint: constraint((T0303)A51.CB, (T0303)F82.CB) [> 4.0213 = 6.7021 < 8.7128] w=0.1386 to align # Constraint # added constraint: constraint((T0303)L35.CB, (T0303)W61.CB) [> 3.0863 = 5.1438 < 6.6870] w=0.1386 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)Y196.CB) [> 3.8823 = 6.4705 < 8.4116] w=0.1352 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)L142.CB) [> 3.2561 = 5.4268 < 7.0549] w=0.1351 to align # Constraint # added constraint: constraint((T0303)L35.CB, (T0303)A62.CB) [> 3.3341 = 5.5569 < 7.2239] w=0.1317 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)F138.CB) [> 4.3708 = 7.2847 < 9.4701] w=0.1317 to align # Constraint # added constraint: constraint((T0303)Q126.CB, (T0303)L137.CB) [> 4.1335 = 6.8891 < 8.9559] w=0.1317 to align # Constraint # added constraint: constraint((T0303)A51.CB, (T0303)P121.CB) [> 3.5740 = 5.9567 < 7.7437] w=0.1306 to align # Constraint # added constraint: constraint((T0303)G13.CA, (T0303)T195.CB) [> 4.4887 = 7.4811 < 9.7255] w=0.1300 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)F78.CB) [> 3.9900 = 6.6500 < 8.6450] w=0.1255 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)A184.CB) [> 4.7170 = 7.8616 < 10.2201] w=0.1248 to align # Constraint # added constraint: constraint((T0303)Q178.CB, (T0303)Y200.CB) [> 4.0936 = 6.8227 < 8.8695] w=0.1248 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)S28.CB) [> 3.3917 = 5.6529 < 7.3488] w=0.1247 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)G197.CA) [> 4.1203 = 6.8672 < 8.9273] w=0.1221 to align # Constraint # added constraint: constraint((T0303)P168.CB, (T0303)A184.CB) [> 4.6455 = 7.7425 < 10.0653] w=0.1212 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)A58.CB) [> 3.5180 = 5.8634 < 7.6224] w=0.1185 to align # Constraint # added constraint: constraint((T0303)Q170.CB, (T0303)A190.CB) [> 3.9617 = 6.6028 < 8.5836] w=0.1178 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)I171.CB) [> 4.4599 = 7.4331 < 9.6630] w=0.1178 to align # Constraint # added constraint: constraint((T0303)L22.CB, (T0303)I47.CB) [> 3.7669 = 6.2781 < 8.1616] w=0.1178 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)L90.CB) [> 4.2685 = 7.1142 < 9.2485] w=0.1178 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)E140.CB) [> 4.4927 = 7.4878 < 9.7341] w=0.1178 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)S177.CB) [> 4.6783 = 7.7972 < 10.1363] w=0.1178 to align # Constraint # added constraint: constraint((T0303)G50.CA, (T0303)P121.CB) [> 3.7527 = 6.2546 < 8.1310] w=0.1173 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)A66.CB) [> 4.2524 = 7.0873 < 9.2135] w=0.1173 to align # Constraint # added constraint: constraint((T0303)L19.CB, (T0303)D176.CB) [> 3.8830 = 6.4717 < 8.4132] w=0.1156 to align # Constraint # added constraint: constraint((T0303)L107.CB, (T0303)L137.CB) [> 4.3998 = 7.3329 < 9.5328] w=0.1144 to align # Constraint # added constraint: constraint((T0303)K120.CB, (T0303)E140.CB) [> 3.7843 = 6.3072 < 8.1993] w=0.1109 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)S139.CB) [> 3.7317 = 6.2195 < 8.0853] w=0.1109 to align # Constraint # added constraint: constraint((T0303)K120.CB, (T0303)S139.CB) [> 2.9030 = 4.8383 < 6.2898] w=0.1109 to align # Constraint # added constraint: constraint((T0303)P121.CB, (T0303)M141.CB) [> 3.8913 = 6.4855 < 8.4311] w=0.1109 to align # Constraint # added constraint: constraint((T0303)Q170.CB, (T0303)C189.CB) [> 4.6702 = 7.7836 < 10.1187] w=0.1109 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)I113.CB) [> 3.8168 = 6.3614 < 8.2698] w=0.1108 to align # Constraint # added constraint: constraint((T0303)L42.CB, (T0303)L54.CB) [> 3.6613 = 6.1022 < 7.9329] w=0.1098 to align # Constraint # added constraint: constraint((T0303)S177.CB, (T0303)Y196.CB) [> 4.3054 = 7.1757 < 9.3284] w=0.1074 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)C189.CB) [> 4.5949 = 7.6582 < 9.9557] w=0.1060 to align # Constraint # added constraint: constraint((T0303)Q110.CB, (T0303)L220.CB) [> 4.7111 = 7.8518 < 10.2074] w=0.1060 to align # Constraint # added constraint: constraint((T0303)L19.CB, (T0303)G197.CA) [> 3.7384 = 6.2307 < 8.0999] w=0.1059 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)K169.CB) [> 3.7565 = 6.2608 < 8.1391] w=0.1040 to align # Constraint # added constraint: constraint((T0303)Y196.CB, (T0303)F213.CB) [> 4.0989 = 6.8315 < 8.8809] w=0.1040 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)L42.CB) [> 3.2886 = 5.4810 < 7.1253] w=0.1040 to align # Constraint # added constraint: constraint((T0303)A51.CB, (T0303)G83.CA) [> 4.4830 = 7.4717 < 9.7132] w=0.1040 to align # Constraint # added constraint: constraint((T0303)I47.CB, (T0303)N179.CB) [> 3.9811 = 6.6352 < 8.6257] w=0.1040 to align # Constraint # added constraint: constraint((T0303)M141.CB, (T0303)L160.CB) [> 3.9928 = 6.6546 < 8.6510] w=0.1040 to align # Constraint # added constraint: constraint((T0303)H153.CB, (T0303)D180.CB) [> 3.7752 = 6.2921 < 8.1797] w=0.1040 to align # Constraint # added constraint: constraint((T0303)N119.CB, (T0303)L147.CB) [> 3.9155 = 6.5258 < 8.4835] w=0.1025 to align # Constraint # added constraint: constraint((T0303)V125.CB, (T0303)L142.CB) [> 4.2704 = 7.1174 < 9.2526] w=0.1005 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)V59.CB) [> 3.6973 = 6.1622 < 8.0108] w=0.0977 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)T195.CB) [> 3.8135 = 6.3558 < 8.2625] w=0.0971 to align # Constraint # added constraint: constraint((T0303)M1.CB, (T0303)Q170.CB) [> 4.0505 = 6.7508 < 8.7761] w=0.0970 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)A62.CB) [> 3.9052 = 6.5086 < 8.4612] w=0.0970 to align # Constraint # added constraint: constraint((T0303)A190.CB, (T0303)I222.CB) [> 4.3447 = 7.2411 < 9.4134] w=0.0970 to align # Constraint # added constraint: constraint((T0303)V191.CB, (T0303)I212.CB) [> 4.3171 = 7.1952 < 9.3538] w=0.0970 to align # Constraint # added constraint: constraint((T0303)H153.CB, (T0303)F182.CB) [> 3.0833 = 5.1389 < 6.6805] w=0.0970 to align # Constraint # added constraint: constraint((T0303)I113.CB, (T0303)D135.CB) [> 2.8561 = 4.7601 < 6.1882] w=0.0970 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)L137.CB) [> 4.6852 = 7.8087 < 10.1513] w=0.0970 to align # Constraint # added constraint: constraint((T0303)I150.CB, (T0303)F182.CB) [> 3.0989 = 5.1649 < 6.7144] w=0.0970 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)L54.CB) [> 3.3872 = 5.6454 < 7.3390] w=0.0908 to align # Constraint # added constraint: constraint((T0303)G50.CA, (T0303)Q145.CB) [> 3.8819 = 6.4699 < 8.4109] w=0.0901 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)L42.CB) [> 3.8957 = 6.4928 < 8.4407] w=0.0901 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)A62.CB) [> 3.3043 = 5.5072 < 7.1593] w=0.0901 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)Q110.CB) [> 4.5196 = 7.5327 < 9.7925] w=0.0901 to align # Constraint # added constraint: constraint((T0303)Y77.CB, (T0303)I93.CB) [> 4.2348 = 7.0581 < 9.1755] w=0.0890 to align # Constraint # added constraint: constraint((T0303)M44.CB, (T0303)I150.CB) [> 3.9383 = 6.5639 < 8.5331] w=0.0854 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)Y198.CB) [> 3.7237 = 6.2061 < 8.0679] w=0.0832 to align # Constraint # added constraint: constraint((T0303)A106.CB, (T0303)I219.CB) [> 4.5713 = 7.6188 < 9.9044] w=0.0832 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)F164.CB) [> 4.5341 = 7.5568 < 9.8238] w=0.0832 to align # Constraint # added constraint: constraint((T0303)L22.CB, (T0303)A51.CB) [> 4.1216 = 6.8694 < 8.9302] w=0.0831 to align # Constraint # added constraint: constraint((T0303)S55.CB, (T0303)N119.CB) [> 3.8974 = 6.4957 < 8.4444] w=0.0831 to align # Constraint # added constraint: constraint((T0303)I47.CB, (T0303)N119.CB) [> 3.4599 = 5.7665 < 7.4965] w=0.0821 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)V43.CB) [> 4.2796 = 7.1326 < 9.2724] w=0.0797 to align # Constraint # added constraint: constraint((T0303)S177.CB, (T0303)T195.CB) [> 4.5903 = 7.6505 < 9.9457] w=0.0797 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)C91.CB) [> 4.4797 = 7.4662 < 9.7061] w=0.0783 to align # Constraint # added constraint: constraint((T0303)F173.CB, (T0303)G193.CA) [> 3.2745 = 5.4574 < 7.0947] w=0.0763 to align # Constraint # added constraint: constraint((T0303)F82.CB, (T0303)H124.CB) [> 3.5749 = 5.9582 < 7.7456] w=0.0762 to align # Constraint # added constraint: constraint((T0303)Q81.CB, (T0303)I93.CB) [> 3.5901 = 5.9835 < 7.7786] w=0.0762 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)V174.CB) [> 4.5409 = 7.5681 < 9.8385] w=0.0728 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)Q145.CB) [> 4.5492 = 7.5820 < 9.8566] w=0.0693 to align # Constraint # added constraint: constraint((T0303)T195.CB, (T0303)W211.CB) [> 3.9062 = 6.5104 < 8.4635] w=0.0631 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)Y77.CB) [> 4.3885 = 7.3141 < 9.5083] w=0.0630 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)K169.CB) [> 4.3491 = 7.2485 < 9.4231] w=0.0624 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)A66.CB) [> 3.6012 = 6.0020 < 7.8025] w=0.0624 to align # Constraint # added constraint: constraint((T0303)S18.CB, (T0303)Y86.CB) [> 3.9318 = 6.5530 < 8.5189] w=0.0624 to align # Constraint # added constraint: constraint((T0303)N17.CB, (T0303)N92.CB) [> 3.1509 = 5.2515 < 6.8270] w=0.0624 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)W61.CB) [> 4.4444 = 7.4074 < 9.6296] w=0.0624 to align # Constraint # added constraint: constraint((T0303)F75.CB, (T0303)L142.CB) [> 4.2510 = 7.0849 < 9.2104] w=0.0624 to align # Constraint # added constraint: constraint((T0303)F182.CB, (T0303)V191.CB) [> 4.6066 = 7.6776 < 9.9810] w=0.0607 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)T103.CB) [> 4.4701 = 7.4503 < 9.6853] w=0.0588 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)C91.CB) [> 4.2633 = 7.1055 < 9.2372] w=0.0574 to align # Constraint # added constraint: constraint((T0303)L30.CB, (T0303)S55.CB) [> 3.2976 = 5.4960 < 7.1448] w=0.0561 to align # Constraint # added constraint: constraint((T0303)V174.CB, (T0303)T195.CB) [> 4.1485 = 6.9142 < 8.9885] w=0.0555 to align # Constraint # added constraint: constraint((T0303)K5.CB, (T0303)L107.CB) [> 4.6632 = 7.7719 < 10.1035] w=0.0554 to align # Constraint # added constraint: constraint((T0303)V100.CB, (T0303)Y198.CB) [> 3.0716 = 5.1193 < 6.6551] w=0.0522 to align # Constraint # added constraint: constraint((T0303)W46.CB, (T0303)A62.CB) [> 3.6026 = 6.0044 < 7.8057] w=0.0485 to align # Constraint # added constraint: constraint((T0303)L30.CB, (T0303)M44.CB) [> 3.9024 = 6.5040 < 8.4552] w=0.0485 to align # Constraint # added constraint: constraint((T0303)L30.CB, (T0303)A62.CB) [> 3.7738 = 6.2896 < 8.1765] w=0.0485 to align # Constraint # added constraint: constraint((T0303)A29.CB, (T0303)Y86.CB) [> 3.3459 = 5.5765 < 7.2494] w=0.0480 to align # Constraint # added constraint: constraint((T0303)I47.CB, (T0303)G144.CA) [> 3.6326 = 6.0542 < 7.8705] w=0.0467 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)W211.CB) [> 4.0928 = 6.8213 < 8.8678] w=0.0416 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)N119.CB) [> 4.5493 = 7.5821 < 9.8567] w=0.0416 to align # Constraint # added constraint: constraint((T0303)S177.CB, (T0303)P203.CB) [> 4.6198 = 7.6996 < 10.0095] w=0.0416 to align # Constraint # added constraint: constraint((T0303)L15.CB, (T0303)I26.CB) [> 4.1308 = 6.8846 < 8.9500] w=0.0416 to align # Constraint # added constraint: constraint((T0303)G8.CA, (T0303)L142.CB) [> 4.7090 = 7.8484 < 10.2029] w=0.0416 to align # Constraint # added constraint: constraint((T0303)L172.CB, (T0303)L194.CB) [> 4.0008 = 6.6679 < 8.6683] w=0.0416 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)I26.CB) [> 4.6434 = 7.7390 < 10.0607] w=0.0416 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)C63.CB) [> 4.2019 = 7.0032 < 9.1042] w=0.0416 to align # Constraint # added constraint: constraint((T0303)P148.CB, (T0303)F182.CB) [> 3.7939 = 6.3232 < 8.2202] w=0.0416 to align # Constraint # added constraint: constraint((T0303)Q178.CB, (T0303)V191.CB) [> 4.5958 = 7.6597 < 9.9576] w=0.0384 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)L147.CB) [> 3.5610 = 5.9349 < 7.7154] w=0.0366 to align # Constraint # added constraint: constraint((T0303)G175.CA, (T0303)W211.CB) [> 4.0463 = 6.7438 < 8.7669] w=0.0347 to align # Constraint # added constraint: constraint((T0303)L22.CB, (T0303)V43.CB) [> 3.7805 = 6.3009 < 8.1911] w=0.0347 to align # Constraint # added constraint: constraint((T0303)V43.CB, (T0303)E149.CB) [> 3.1242 = 5.2069 < 6.7690] w=0.0347 to align # Constraint # added constraint: constraint((T0303)V43.CB, (T0303)A66.CB) [> 4.0980 = 6.8300 < 8.8790] w=0.0347 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)S55.CB) [> 3.1088 = 5.1813 < 6.7357] w=0.0347 to align # Constraint # added constraint: constraint((T0303)D52.CB, (T0303)L147.CB) [> 3.8751 = 6.4584 < 8.3960] w=0.0347 to align # Constraint # added constraint: constraint((T0303)M44.CB, (T0303)R57.CB) [> 4.2097 = 7.0161 < 9.1209] w=0.0347 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)T103.CB) [> 4.6100 = 7.6833 < 9.9883] w=0.0346 to align # Constraint # added constraint: constraint((T0303)L22.CB, (T0303)C91.CB) [> 3.2427 = 5.4045 < 7.0259] w=0.0341 to align # Constraint # added constraint: constraint((T0303)G48.CA, (T0303)G144.CA) [> 4.0689 = 6.7816 < 8.8160] w=0.0329 to align # Constraint # added constraint: constraint((T0303)Q170.CB, (T0303)V191.CB) [> 4.0807 = 6.8012 < 8.8415] w=0.0277 to align # Constraint # added constraint: constraint((T0303)L19.CB, (T0303)S177.CB) [> 4.6944 = 7.8240 < 10.1711] w=0.0277 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)E149.CB) [> 4.0351 = 6.7251 < 8.7427] w=0.0277 to align # Constraint # added constraint: constraint((T0303)T2.CB, (T0303)K169.CB) [> 4.1742 = 6.9571 < 9.0442] w=0.0277 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)I150.CB) [> 4.3913 = 7.3188 < 9.5144] w=0.0277 to align # Constraint # added constraint: constraint((T0303)A115.CB, (T0303)G143.CA) [> 4.3656 = 7.2760 < 9.4587] w=0.0277 to align # Constraint # added constraint: constraint((T0303)I181.CB, (T0303)L194.CB) [> 3.7690 = 6.2817 < 8.1662] w=0.0243 to align # Constraint # added constraint: constraint((T0303)F82.CB, (T0303)C91.CB) [> 4.1950 = 6.9917 < 9.0892] w=0.0221 to align # Constraint # added constraint: constraint((T0303)Q3.CB, (T0303)Q110.CB) [> 3.6656 = 6.1093 < 7.9421] w=0.0208 to align # Constraint # added constraint: constraint((T0303)M1.CB, (T0303)I222.CB) [> 3.5828 = 5.9713 < 7.7627] w=0.0208 to align # Constraint # added constraint: constraint((T0303)T2.CB, (T0303)A190.CB) [> 4.7874 = 7.9790 < 10.3727] w=0.0208 to align # Constraint # added constraint: constraint((T0303)S55.CB, (T0303)L90.CB) [> 3.2188 = 5.3647 < 6.9741] w=0.0208 to align # Constraint # added constraint: constraint((T0303)S177.CB, (T0303)G193.CA) [> 2.5538 = 4.2564 < 5.5333] w=0.0208 to align # Constraint # added constraint: constraint((T0303)H185.CB, (T0303)G197.CA) [> 4.5076 = 7.5126 < 9.7664] w=0.0208 to align # Constraint # added constraint: constraint((T0303)L11.CB, (T0303)L54.CB) [> 4.3214 = 7.2024 < 9.3631] w=0.0208 to align # Constraint # added constraint: constraint((T0303)L114.CB, (T0303)L129.CB) [> 4.7334 = 7.8891 < 10.2558] w=0.0208 to align # Constraint # added constraint: constraint((T0303)C63.CB, (T0303)L142.CB) [> 3.6246 = 6.0411 < 7.8534] w=0.0208 to align # Constraint # added constraint: constraint((T0303)T118.CB, (T0303)S146.CB) [> 4.0952 = 6.8254 < 8.8730] w=0.0208 to align # Constraint # added constraint: constraint((T0303)A23.CB, (T0303)D176.CB) [> 4.7890 = 7.9817 < 10.3762] w=0.0191 to align # Constraint # added constraint: constraint((T0303)V16.CB, (T0303)L90.CB) [> 3.8372 = 6.3953 < 8.3139] w=0.0139 to align # Constraint # added constraint: constraint((T0303)V33.CB, (T0303)Y85.CB) [> 4.0822 = 6.8037 < 8.8448] w=0.0139 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)Y85.CB) [> 4.6912 = 7.8187 < 10.1644] w=0.0139 to align # Constraint # added constraint: constraint((T0303)L90.CB, (T0303)A115.CB) [> 4.4622 = 7.4371 < 9.6682] w=0.0139 to align # Constraint # added constraint: constraint((T0303)V117.CB, (T0303)G175.CA) [> 4.7616 = 7.9360 < 10.3168] w=0.0139 to align # Constraint # added constraint: constraint((T0303)Y86.CB, (T0303)L107.CB) [> 4.6834 = 7.8056 < 10.1473] w=0.0139 to align # Constraint # added constraint: constraint((T0303)G143.CA, (T0303)Q178.CB) [> 3.4416 = 5.7361 < 7.4569] w=0.0139 to align # Constraint # added constraint: constraint((T0303)V59.CB, (T0303)S146.CB) [> 3.7527 = 6.2545 < 8.1308] w=0.0139 to align # Constraint # added constraint: constraint((T0303)I26.CB, (T0303)L90.CB) [> 4.4031 = 7.3385 < 9.5400] w=0.0071 to align # Constraint # added constraint: constraint((T0303)C91.CB, (T0303)G111.CA) [> 4.6319 = 7.7198 < 10.0358] w=0.0069 to align # Constraint # added constraint: constraint((T0303)L107.CB, (T0303)V117.CB) [> 4.2828 = 7.1380 < 9.2794] w=0.0069 to align # Constraint # added constraint: constraint((T0303)F4.CB, (T0303)V191.CB) [> 4.4807 = 7.4678 < 9.7081] w=0.0069 to align # Constraint # added constraint: constraint((T0303)M1.CB, (T0303)Y112.CB) [> 4.5293 = 7.5489 < 9.8135] w=0.0069 to align # Constraint # added constraint: constraint((T0303)A23.CB, (T0303)S177.CB) [> 4.7236 = 7.8727 < 10.2345] w=0.0069 to align # Constraint # added constraint: constraint((T0303)I171.CB, (T0303)V191.CB) [> 4.5753 = 7.6256 < 9.9133] w=0.0069 to align # Constraint # added constraint: constraint((T0303)S94.CB, (T0303)Y112.CB) [> 3.0580 = 5.0967 < 6.6258] w=0.0069 to align # Constraint # added constraint: constraint((T0303)C63.CB, (T0303)M141.CB) [> 4.1055 = 6.8425 < 8.8953] w=0.0069 to align # Constraint # added constraint: constraint((T0303)F9.CB, (T0303)L107.CB) [> 4.7167 = 7.8612 < 10.2196] w=0.0021 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0303/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0303/decoys/ # ReadConformPDB reading from PDB file chimera1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 3 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 840, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 850, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 852, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 854, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 856, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 858, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 860, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 862, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 864, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 866, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 868, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 870, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 872, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 874, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 876, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 42, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 106, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 108, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 834, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 836, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 840, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 842, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 844, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 846, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 848, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 850, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 852, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 854, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 856, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 858, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 860, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 862, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 864, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 866, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 868, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 870, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 872, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 874, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 876, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 70, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 72, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 318, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 320, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 398, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 400, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 674, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 676, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 678, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 680, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 22, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 24, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 88, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 90, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 92, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 674, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 676, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 Skipped atom 19, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 206, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 208, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 318, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 320, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 398, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 400, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 674, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 676, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 678, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 680, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 30, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 90, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 92, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 254, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 256, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0303)G144.O and (T0303)Q145.N only 0.000 apart, marking (T0303)Q145.N as missing # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0303)H124.O and (T0303)V125.N only 0.000 apart, marking (T0303)V125.N as missing # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0303)V116.O and (T0303)V117.N only 0.000 apart, marking (T0303)V117.N as missing # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0303)P152.O and (T0303)H153.N only 0.000 apart, marking (T0303)H153.N as missing # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0303 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 255 model score -0.4512 model score -0.4546 model score -0.1461 model score -0.1637 model score -0.1437 model score -0.1749 model score -0.1549 model score -0.2130 model score -0.0847 model score -0.1490 model score -0.0973 model score -0.1869 model score 0.4326 model score 0.0734 model score -0.0061 model score 0.2819 model score -0.3038 model score -0.6161 model score 1.1944 model score 1.2309 model score 1.2489 model score 1.2573 model score 1.7966 model score 1.8037 model score 1.7448 model score 1.6108 model score 1.7250 model score -0.5782 model score -0.4117 model score -0.2648 model score -0.4694 model score -0.4188 model score -0.2455 model score -0.5419 model score -0.4605 model score -0.4684 model score -0.4816 model score -0.5263 model score 0.4708 model score -0.5055 model score -0.3787 model score 0.0020 model score -0.4005 model score -0.0831 model score 1.2631 model score 1.2609 model score 1.2596 model score 1.2684 model score 1.2624 model score -0.5419 model score -0.4721 model score -0.5263 model score -0.4816 model score -0.5162 model score -0.5113 model score -0.5419 model score -0.4816 model score -0.4816 model score -0.4684 model score -0.6024 model score 1.1299 model score 1.3112 model score 0.5195 model score 1.4735 model score 1.2612 model score 1.2607 model score 1.2575 model score 1.2606 model score 1.2611 model score 1.2612 model score 1.2575 model score 1.2607 model score 1.2606 model score 1.2611 model score 2.3210 model score 2.4335 model score 2.3934 model score 2.3257 model score 2.3957 model score -0.4840 model score -0.4473 model score -0.2083 model score 0.1427 model score -0.0151 model score 1.2574 model score 1.2569 model score 1.2604 model score 1.2583 model score 1.2602 model score -0.4605 model score -0.4684 model score -0.2874 model score -0.3227 model score -0.4798 model score -0.4902 model score -0.5333 model score -0.4736 model score -0.3221 model score -0.4509 model score -0.5072 model score -0.5541 model score -0.5541 model score -0.3439 model score -0.2364 model score -0.0874 model score -0.3207 model score -0.4312 model score -0.4297 model score -0.3882 model score -0.3055 model score -0.3511 model score -0.4749 model score 1.2688 model score -0.3134 model score -0.5403 model score -0.5211 model score -0.4226 model score -0.4978 model score -0.5841 model score -0.1483 model score -0.4731 model score -0.4839 model score -0.5217 model score -0.4297 model score -0.4209 model score -0.4021 model score -0.3961 model score -0.3836 model score -0.4077 model score -0.4482 model score -0.3868 model score -0.4163 model score -0.4209 model score -0.1807 model score -0.4997 model score -0.4889 model score -0.4325 model score -0.5140 model score -0.5094 model score -0.4602 model score -0.4807 model score -0.4649 model score -0.4649 model score -0.4648 model score -0.4998 model score -0.4815 model score -0.4889 model score -0.5140 model score -0.5140 model score -0.4894 model score -0.4743 model score -0.4952 model score -0.4720 model score -0.4265 model score -0.4264 model score -0.5192 model score -0.4477 model score -0.4079 model score -0.3570 model score -0.4049 model score -0.5456 model score -0.4790 model score -0.4536 model score -0.3873 model score -0.2159 model score -0.3824 model score -0.4325 model score -0.4815 model score -0.4894 model score -0.3543 model score -0.5210 model score -0.4326 model score 0.0992 model score 0.0914 model score -0.5217 model score 1.2574 model score 1.2600 model score 1.2600 model score 1.2583 model score 1.2612 model score 1.2574 model score 1.2612 model score 1.2583 model score 1.2609 model score 1.2577 model score -0.3932 model score -0.0966 model score -0.3043 model score -0.0868 model score -0.3444 model score -0.4952 model score -0.3198 model score -0.0266 model score -0.2841 model score -0.5074 model score -0.4952 model score -0.3367 model score -0.5134 model score -0.0306 model score -0.3898 model score -0.3418 model score -0.5099 model score -0.3437 model score -0.0340 model score -0.2861 model score 1.2574 model score 1.2612 model score 1.2569 model score 1.2607 model score 1.2583 model score -0.5402 model score 1.2574 model score 1.2612 model score 1.2569 model score 1.2617 model score 1.2583 model score -0.6129 model score -0.6083 model score -0.5505 model score -0.3095 model score -0.4242 model score -0.5317 model score -0.4829 model score 1.2611 model score 1.2577 model score 1.2607 model score 1.2606 model score 1.2597 model score 1.2698 model score 1.2612 model score 1.2709 model score 1.2695 model score 1.2574 model score -0.5342 model score -0.4940 model score -0.5426 model score -0.5385 model score -0.4691 model score 1.8746 model score 1.9179 model score 1.9780 model score 2.4012 model score 1.9897 model score -0.3008 model score -0.4752 model score -0.4055 model score -0.4396 model score -0.5505 model score -0.3099 model score -0.5416 model score -0.1122 model score -0.4404 model score -0.3346 model score -0.1739 model score -0.5470 weight: 0.9513 eval: -0.4512 min: -0.6161 max: 2.4335 weight: 0.9523 eval: -0.4546 min: -0.6161 max: 2.4335 weight: 0.8613 eval: -0.1461 min: -0.6161 max: 2.4335 weight: 0.8665 eval: -0.1637 min: -0.6161 max: 2.4335 weight: 0.8606 eval: -0.1437 min: -0.6161 max: 2.4335 weight: 0.8698 eval: -0.1749 min: -0.6161 max: 2.4335 weight: 0.8639 eval: -0.1549 min: -0.6161 max: 2.4335 weight: 0.8810 eval: -0.2130 min: -0.6161 max: 2.4335 weight: 0.8432 eval: -0.0847 min: -0.6161 max: 2.4335 weight: 0.8622 eval: -0.1490 min: -0.6161 max: 2.4335 weight: 0.8469 eval: -0.0973 min: -0.6161 max: 2.4335 weight: 0.8734 eval: -0.1869 min: -0.6161 max: 2.4335 weight: 0.6905 eval: 0.4326 min: -0.6161 max: 2.4335 weight: 0.7965 eval: 0.0734 min: -0.6161 max: 2.4335 weight: 0.8200 eval: -0.0061 min: -0.6161 max: 2.4335 weight: 0.7350 eval: 0.2819 min: -0.6161 max: 2.4335 weight: 0.9079 eval: -0.3038 min: -0.6161 max: 2.4335 weight: 1.0000 eval: -0.6161 min: -0.6161 max: 2.4335 weight: 0.4657 eval: 1.1944 min: -0.6161 max: 2.4335 weight: 0.4549 eval: 1.2309 min: -0.6161 max: 2.4335 weight: 0.4496 eval: 1.2489 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2573 min: -0.6161 max: 2.4335 weight: 0.2880 eval: 1.7966 min: -0.6161 max: 2.4335 weight: 0.2859 eval: 1.8037 min: -0.6161 max: 2.4335 weight: 0.3033 eval: 1.7448 min: -0.6161 max: 2.4335 weight: 0.3428 eval: 1.6108 min: -0.6161 max: 2.4335 weight: 0.3091 eval: 1.7250 min: -0.6161 max: 2.4335 weight: 0.9888 eval: -0.5782 min: -0.6161 max: 2.4335 weight: 0.9397 eval: -0.4117 min: -0.6161 max: 2.4335 weight: 0.8963 eval: -0.2648 min: -0.6161 max: 2.4335 weight: 0.9567 eval: -0.4694 min: -0.6161 max: 2.4335 weight: 0.9418 eval: -0.4188 min: -0.6161 max: 2.4335 weight: 0.8907 eval: -0.2455 min: -0.6161 max: 2.4335 weight: 0.9781 eval: -0.5419 min: -0.6161 max: 2.4335 weight: 0.9541 eval: -0.4605 min: -0.6161 max: 2.4335 weight: 0.9564 eval: -0.4684 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4816 min: -0.6161 max: 2.4335 weight: 0.9735 eval: -0.5263 min: -0.6161 max: 2.4335 weight: 0.6792 eval: 0.4708 min: -0.6161 max: 2.4335 weight: 0.9674 eval: -0.5055 min: -0.6161 max: 2.4335 weight: 0.9300 eval: -0.3787 min: -0.6161 max: 2.4335 weight: 0.8176 eval: 0.0020 min: -0.6161 max: 2.4335 weight: 0.9364 eval: -0.4005 min: -0.6161 max: 2.4335 weight: 0.8427 eval: -0.0831 min: -0.6161 max: 2.4335 weight: 0.4454 eval: 1.2631 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2609 min: -0.6161 max: 2.4335 weight: 0.4464 eval: 1.2596 min: -0.6161 max: 2.4335 weight: 0.4439 eval: 1.2684 min: -0.6161 max: 2.4335 weight: 0.4456 eval: 1.2624 min: -0.6161 max: 2.4335 weight: 0.9781 eval: -0.5419 min: -0.6161 max: 2.4335 weight: 0.9575 eval: -0.4721 min: -0.6161 max: 2.4335 weight: 0.9735 eval: -0.5263 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4816 min: -0.6161 max: 2.4335 weight: 0.9705 eval: -0.5162 min: -0.6161 max: 2.4335 weight: 0.9691 eval: -0.5113 min: -0.6161 max: 2.4335 weight: 0.9781 eval: -0.5419 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4816 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4816 min: -0.6161 max: 2.4335 weight: 0.9564 eval: -0.4684 min: -0.6161 max: 2.4335 weight: 0.9960 eval: -0.6024 min: -0.6161 max: 2.4335 weight: 0.4847 eval: 1.1299 min: -0.6161 max: 2.4335 weight: 0.4312 eval: 1.3112 min: -0.6161 max: 2.4335 weight: 0.6649 eval: 0.5195 min: -0.6161 max: 2.4335 weight: 0.3833 eval: 1.4735 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2607 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2575 min: -0.6161 max: 2.4335 weight: 0.4462 eval: 1.2606 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2611 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2575 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2607 min: -0.6161 max: 2.4335 weight: 0.4462 eval: 1.2606 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2611 min: -0.6161 max: 2.4335 weight: 0.1332 eval: 2.3210 min: -0.6161 max: 2.4335 weight: 0.1000 eval: 2.4335 min: -0.6161 max: 2.4335 weight: 0.1118 eval: 2.3934 min: -0.6161 max: 2.4335 weight: 0.1318 eval: 2.3257 min: -0.6161 max: 2.4335 weight: 0.1112 eval: 2.3957 min: -0.6161 max: 2.4335 weight: 0.9610 eval: -0.4840 min: -0.6161 max: 2.4335 weight: 0.9502 eval: -0.4473 min: -0.6161 max: 2.4335 weight: 0.8797 eval: -0.2083 min: -0.6161 max: 2.4335 weight: 0.7761 eval: 0.1427 min: -0.6161 max: 2.4335 weight: 0.8226 eval: -0.0151 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.4473 eval: 1.2569 min: -0.6161 max: 2.4335 weight: 0.4462 eval: 1.2604 min: -0.6161 max: 2.4335 weight: 0.4468 eval: 1.2583 min: -0.6161 max: 2.4335 weight: 0.4463 eval: 1.2602 min: -0.6161 max: 2.4335 weight: 0.9541 eval: -0.4605 min: -0.6161 max: 2.4335 weight: 0.9564 eval: -0.4684 min: -0.6161 max: 2.4335 weight: 0.9030 eval: -0.2874 min: -0.6161 max: 2.4335 weight: 0.9134 eval: -0.3227 min: -0.6161 max: 2.4335 weight: 0.9598 eval: -0.4798 min: -0.6161 max: 2.4335 weight: 0.9628 eval: -0.4902 min: -0.6161 max: 2.4335 weight: 0.9756 eval: -0.5333 min: -0.6161 max: 2.4335 weight: 0.9580 eval: -0.4736 min: -0.6161 max: 2.4335 weight: 0.9133 eval: -0.3221 min: -0.6161 max: 2.4335 weight: 0.9513 eval: -0.4509 min: -0.6161 max: 2.4335 weight: 0.9679 eval: -0.5072 min: -0.6161 max: 2.4335 weight: 0.9817 eval: -0.5541 min: -0.6161 max: 2.4335 weight: 0.9817 eval: -0.5541 min: -0.6161 max: 2.4335 weight: 0.9197 eval: -0.3439 min: -0.6161 max: 2.4335 weight: 0.8880 eval: -0.2364 min: -0.6161 max: 2.4335 weight: 0.8440 eval: -0.0874 min: -0.6161 max: 2.4335 weight: 0.9128 eval: -0.3207 min: -0.6161 max: 2.4335 weight: 0.9454 eval: -0.4312 min: -0.6161 max: 2.4335 weight: 0.9450 eval: -0.4297 min: -0.6161 max: 2.4335 weight: 0.9328 eval: -0.3882 min: -0.6161 max: 2.4335 weight: 0.9084 eval: -0.3055 min: -0.6161 max: 2.4335 weight: 0.9218 eval: -0.3511 min: -0.6161 max: 2.4335 weight: 0.9583 eval: -0.4749 min: -0.6161 max: 2.4335 weight: 0.4437 eval: 1.2688 min: -0.6161 max: 2.4335 weight: 0.9107 eval: -0.3134 min: -0.6161 max: 2.4335 weight: 0.9776 eval: -0.5403 min: -0.6161 max: 2.4335 weight: 0.9720 eval: -0.5211 min: -0.6161 max: 2.4335 weight: 0.9429 eval: -0.4226 min: -0.6161 max: 2.4335 weight: 0.9651 eval: -0.4978 min: -0.6161 max: 2.4335 weight: 0.9906 eval: -0.5841 min: -0.6161 max: 2.4335 weight: 0.8620 eval: -0.1483 min: -0.6161 max: 2.4335 weight: 0.9578 eval: -0.4731 min: -0.6161 max: 2.4335 weight: 0.9610 eval: -0.4839 min: -0.6161 max: 2.4335 weight: 0.9722 eval: -0.5217 min: -0.6161 max: 2.4335 weight: 0.9450 eval: -0.4297 min: -0.6161 max: 2.4335 weight: 0.9424 eval: -0.4209 min: -0.6161 max: 2.4335 weight: 0.9369 eval: -0.4021 min: -0.6161 max: 2.4335 weight: 0.9351 eval: -0.3961 min: -0.6161 max: 2.4335 weight: 0.9314 eval: -0.3836 min: -0.6161 max: 2.4335 weight: 0.9385 eval: -0.4077 min: -0.6161 max: 2.4335 weight: 0.9505 eval: -0.4482 min: -0.6161 max: 2.4335 weight: 0.9323 eval: -0.3868 min: -0.6161 max: 2.4335 weight: 0.9410 eval: -0.4163 min: -0.6161 max: 2.4335 weight: 0.9424 eval: -0.4209 min: -0.6161 max: 2.4335 weight: 0.8715 eval: -0.1807 min: -0.6161 max: 2.4335 weight: 0.9657 eval: -0.4997 min: -0.6161 max: 2.4335 weight: 0.9625 eval: -0.4889 min: -0.6161 max: 2.4335 weight: 0.9458 eval: -0.4325 min: -0.6161 max: 2.4335 weight: 0.9699 eval: -0.5140 min: -0.6161 max: 2.4335 weight: 0.9685 eval: -0.5094 min: -0.6161 max: 2.4335 weight: 0.9540 eval: -0.4602 min: -0.6161 max: 2.4335 weight: 0.9601 eval: -0.4807 min: -0.6161 max: 2.4335 weight: 0.9554 eval: -0.4649 min: -0.6161 max: 2.4335 weight: 0.9554 eval: -0.4649 min: -0.6161 max: 2.4335 weight: 0.9554 eval: -0.4648 min: -0.6161 max: 2.4335 weight: 0.9657 eval: -0.4998 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4815 min: -0.6161 max: 2.4335 weight: 0.9625 eval: -0.4889 min: -0.6161 max: 2.4335 weight: 0.9699 eval: -0.5140 min: -0.6161 max: 2.4335 weight: 0.9699 eval: -0.5140 min: -0.6161 max: 2.4335 weight: 0.9626 eval: -0.4894 min: -0.6161 max: 2.4335 weight: 0.9582 eval: -0.4743 min: -0.6161 max: 2.4335 weight: 0.9643 eval: -0.4952 min: -0.6161 max: 2.4335 weight: 0.9575 eval: -0.4720 min: -0.6161 max: 2.4335 weight: 0.9441 eval: -0.4265 min: -0.6161 max: 2.4335 weight: 0.9440 eval: -0.4264 min: -0.6161 max: 2.4335 weight: 0.9714 eval: -0.5192 min: -0.6161 max: 2.4335 weight: 0.9503 eval: -0.4477 min: -0.6161 max: 2.4335 weight: 0.9386 eval: -0.4079 min: -0.6161 max: 2.4335 weight: 0.9236 eval: -0.3570 min: -0.6161 max: 2.4335 weight: 0.9377 eval: -0.4049 min: -0.6161 max: 2.4335 weight: 0.9792 eval: -0.5456 min: -0.6161 max: 2.4335 weight: 0.9596 eval: -0.4790 min: -0.6161 max: 2.4335 weight: 0.9521 eval: -0.4536 min: -0.6161 max: 2.4335 weight: 0.9325 eval: -0.3873 min: -0.6161 max: 2.4335 weight: 0.8819 eval: -0.2159 min: -0.6161 max: 2.4335 weight: 0.9310 eval: -0.3824 min: -0.6161 max: 2.4335 weight: 0.9458 eval: -0.4325 min: -0.6161 max: 2.4335 weight: 0.9603 eval: -0.4815 min: -0.6161 max: 2.4335 weight: 0.9626 eval: -0.4894 min: -0.6161 max: 2.4335 weight: 0.9228 eval: -0.3543 min: -0.6161 max: 2.4335 weight: 0.9720 eval: -0.5210 min: -0.6161 max: 2.4335 weight: 0.9459 eval: -0.4326 min: -0.6161 max: 2.4335 weight: 0.7889 eval: 0.0992 min: -0.6161 max: 2.4335 weight: 0.7912 eval: 0.0914 min: -0.6161 max: 2.4335 weight: 0.9721 eval: -0.5217 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.4464 eval: 1.2600 min: -0.6161 max: 2.4335 weight: 0.4463 eval: 1.2600 min: -0.6161 max: 2.4335 weight: 0.4468 eval: 1.2583 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4468 eval: 1.2583 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2609 min: -0.6161 max: 2.4335 weight: 0.4470 eval: 1.2577 min: -0.6161 max: 2.4335 weight: 0.9342 eval: -0.3932 min: -0.6161 max: 2.4335 weight: 0.8467 eval: -0.0966 min: -0.6161 max: 2.4335 weight: 0.9080 eval: -0.3043 min: -0.6161 max: 2.4335 weight: 0.8438 eval: -0.0868 min: -0.6161 max: 2.4335 weight: 0.9198 eval: -0.3444 min: -0.6161 max: 2.4335 weight: 0.9643 eval: -0.4952 min: -0.6161 max: 2.4335 weight: 0.9126 eval: -0.3198 min: -0.6161 max: 2.4335 weight: 0.8261 eval: -0.0266 min: -0.6161 max: 2.4335 weight: 0.9020 eval: -0.2841 min: -0.6161 max: 2.4335 weight: 0.9679 eval: -0.5074 min: -0.6161 max: 2.4335 weight: 0.9643 eval: -0.4952 min: -0.6161 max: 2.4335 weight: 0.9176 eval: -0.3367 min: -0.6161 max: 2.4335 weight: 0.9697 eval: -0.5134 min: -0.6161 max: 2.4335 weight: 0.8272 eval: -0.0306 min: -0.6161 max: 2.4335 weight: 0.9332 eval: -0.3898 min: -0.6161 max: 2.4335 weight: 0.9191 eval: -0.3418 min: -0.6161 max: 2.4335 weight: 0.9687 eval: -0.5099 min: -0.6161 max: 2.4335 weight: 0.9196 eval: -0.3437 min: -0.6161 max: 2.4335 weight: 0.8282 eval: -0.0340 min: -0.6161 max: 2.4335 weight: 0.9026 eval: -0.2861 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4473 eval: 1.2569 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2607 min: -0.6161 max: 2.4335 weight: 0.4468 eval: 1.2583 min: -0.6161 max: 2.4335 weight: 0.9776 eval: -0.5402 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4473 eval: 1.2569 min: -0.6161 max: 2.4335 weight: 0.4458 eval: 1.2617 min: -0.6161 max: 2.4335 weight: 0.4468 eval: 1.2583 min: -0.6161 max: 2.4335 weight: 0.9991 eval: -0.6129 min: -0.6161 max: 2.4335 weight: 0.9977 eval: -0.6083 min: -0.6161 max: 2.4335 weight: 0.9806 eval: -0.5505 min: -0.6161 max: 2.4335 weight: 0.9095 eval: -0.3095 min: -0.6161 max: 2.4335 weight: 0.9434 eval: -0.4242 min: -0.6161 max: 2.4335 weight: 0.9751 eval: -0.5317 min: -0.6161 max: 2.4335 weight: 0.9607 eval: -0.4829 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2611 min: -0.6161 max: 2.4335 weight: 0.4470 eval: 1.2577 min: -0.6161 max: 2.4335 weight: 0.4461 eval: 1.2607 min: -0.6161 max: 2.4335 weight: 0.4462 eval: 1.2606 min: -0.6161 max: 2.4335 weight: 0.4464 eval: 1.2597 min: -0.6161 max: 2.4335 weight: 0.4434 eval: 1.2698 min: -0.6161 max: 2.4335 weight: 0.4460 eval: 1.2612 min: -0.6161 max: 2.4335 weight: 0.4431 eval: 1.2709 min: -0.6161 max: 2.4335 weight: 0.4435 eval: 1.2695 min: -0.6161 max: 2.4335 weight: 0.4471 eval: 1.2574 min: -0.6161 max: 2.4335 weight: 0.9758 eval: -0.5342 min: -0.6161 max: 2.4335 weight: 0.9640 eval: -0.4940 min: -0.6161 max: 2.4335 weight: 0.9783 eval: -0.5426 min: -0.6161 max: 2.4335 weight: 0.9771 eval: -0.5385 min: -0.6161 max: 2.4335 weight: 0.9566 eval: -0.4691 min: -0.6161 max: 2.4335 weight: 0.2649 eval: 1.8746 min: -0.6161 max: 2.4335 weight: 0.2522 eval: 1.9179 min: -0.6161 max: 2.4335 weight: 0.2344 eval: 1.9780 min: -0.6161 max: 2.4335 weight: 0.1096 eval: 2.4012 min: -0.6161 max: 2.4335 weight: 0.2310 eval: 1.9897 min: -0.6161 max: 2.4335 weight: 0.9070 eval: -0.3008 min: -0.6161 max: 2.4335 weight: 0.9584 eval: -0.4752 min: -0.6161 max: 2.4335 weight: 0.9378 eval: -0.4055 min: -0.6161 max: 2.4335 weight: 0.9479 eval: -0.4396 min: -0.6161 max: 2.4335 weight: 0.9806 eval: -0.5505 min: -0.6161 max: 2.4335 weight: 0.9097 eval: -0.3099 min: -0.6161 max: 2.4335 weight: 0.9780 eval: -0.5416 min: -0.6161 max: 2.4335 weight: 0.8513 eval: -0.1122 min: -0.6161 max: 2.4335 weight: 0.9482 eval: -0.4404 min: -0.6161 max: 2.4335 weight: 0.9169 eval: -0.3346 min: -0.6161 max: 2.4335 weight: 0.8695 eval: -0.1739 min: -0.6161 max: 2.4335 weight: 0.9796 eval: -0.5470 min: -0.6161 max: 2.4335 Adding 6792 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -377.3411, CN propb: -377.3411 weights: 0.4482 constraints: 550 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 550 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 550 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6242 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6242 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6792 # command: