# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0302/ # command:# Making conformation for sequence T0302 numbered 1 through 132 Created new target T0302 from T0302.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0302/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0302//projects/compbio/experiments/protein-predict/casp7/T0302/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0302//projects/compbio/experiments/protein-predict/casp7/T0302/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0302/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0302/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0302)I71.CB, (T0302)I89.CB) [> 3.5962 = 5.9937 < 7.7918] w=1.0000 to align # Constraint # added constraint: constraint((T0302)E42.CB, (T0302)F70.CB) [> 4.4405 = 7.4008 < 9.6211] w=0.9969 to align # Constraint # added constraint: constraint((T0302)L18.CB, (T0302)F28.CB) [> 3.5166 = 5.8611 < 7.6194] w=0.9666 to align # Constraint # added constraint: constraint((T0302)T29.CB, (T0302)I41.CB) [> 3.4339 = 5.7231 < 7.4401] w=0.9666 to align # Constraint # added constraint: constraint((T0302)L32.CB, (T0302)I41.CB) [> 3.2707 = 5.4512 < 7.0865] w=0.9666 to align # Constraint # added constraint: constraint((T0302)E39.CB, (T0302)F70.CB) [> 3.8949 = 6.4915 < 8.4390] w=0.9666 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)I66.CB) [> 4.4964 = 7.4940 < 9.7422] w=0.9666 to align # Constraint # added constraint: constraint((T0302)A46.CB, (T0302)I66.CB) [> 3.1313 = 5.2189 < 6.7846] w=0.9666 to align # Constraint # added constraint: constraint((T0302)A46.CB, (T0302)F70.CB) [> 4.1435 = 6.9058 < 8.9775] w=0.9666 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)K62.CB) [> 3.3219 = 5.5365 < 7.1975] w=0.9666 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)A63.CB) [> 3.9910 = 6.6517 < 8.6472] w=0.9666 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)I66.CB) [> 3.8289 = 6.3815 < 8.2959] w=0.9666 to align # Constraint # added constraint: constraint((T0302)Y67.CB, (T0302)I89.CB) [> 4.0615 = 6.7692 < 8.7999] w=0.9666 to align # Constraint # added constraint: constraint((T0302)I71.CB, (T0302)L81.CB) [> 4.1975 = 6.9958 < 9.0945] w=0.9648 to align # Constraint # added constraint: constraint((T0302)I89.CB, (T0302)A104.CB) [> 3.5460 = 5.9100 < 7.6830] w=0.9513 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)V108.CB) [> 3.5914 = 5.9856 < 7.7813] w=0.9313 to align # Constraint # added constraint: constraint((T0302)T85.CB, (T0302)R107.CB) [> 3.4764 = 5.7940 < 7.5321] w=0.9201 to align # Constraint # added constraint: constraint((T0302)I71.CB, (T0302)K86.CB) [> 3.7384 = 6.2307 < 8.0999] w=0.9033 to align # Constraint # added constraint: constraint((T0302)K64.CB, (T0302)I93.CB) [> 4.0833 = 6.8054 < 8.8470] w=0.8699 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)I93.CB) [> 3.6124 = 6.0206 < 7.8268] w=0.8699 to align # Constraint # added constraint: constraint((T0302)H60.CB, (T0302)P96.CB) [> 3.2487 = 5.4145 < 7.0388] w=0.8699 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)P96.CB) [> 3.0087 = 5.0145 < 6.5189] w=0.8699 to align # Constraint # added constraint: constraint((T0302)C47.CB, (T0302)I66.CB) [> 4.1809 = 6.9681 < 9.0585] w=0.8699 to align # Constraint # added constraint: constraint((T0302)T85.CB, (T0302)A104.CB) [> 3.3516 = 5.5860 < 7.2618] w=0.8699 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)I59.CB) [> 3.9791 = 6.6319 < 8.6215] w=0.8699 to align # Constraint # added constraint: constraint((T0302)C47.CB, (T0302)Q105.CB) [> 2.7195 = 4.5326 < 5.8924] w=0.8699 to align # Constraint # added constraint: constraint((T0302)I66.CB, (T0302)F101.CB) [> 4.0981 = 6.8302 < 8.8792] w=0.8067 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)F101.CB) [> 4.2906 = 7.1510 < 9.2963] w=0.8067 to align # Constraint # added constraint: constraint((T0302)F31.CB, (T0302)F120.CB) [> 3.0545 = 5.0909 < 6.6181] w=0.8024 to align # Constraint # added constraint: constraint((T0302)F28.CB, (T0302)F120.CB) [> 3.6639 = 6.1065 < 7.9385] w=0.8024 to align # Constraint # added constraint: constraint((T0302)K51.CB, (T0302)L98.CB) [> 3.4257 = 5.7095 < 7.4224] w=0.7900 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)F101.CB) [> 3.6519 = 6.0865 < 7.9125] w=0.7900 to align # Constraint # added constraint: constraint((T0302)F15.CB, (T0302)E113.CB) [> 3.0358 = 5.0597 < 6.5777] w=0.7765 to align # Constraint # added constraint: constraint((T0302)F15.CB, (T0302)M112.CB) [> 4.0470 = 6.7450 < 8.7685] w=0.7733 to align # Constraint # added constraint: constraint((T0302)N40.CB, (T0302)V108.CB) [> 3.0501 = 5.0835 < 6.6086] w=0.7733 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)A104.CB) [> 4.5776 = 7.6293 < 9.9181] w=0.7733 to align # Constraint # added constraint: constraint((T0302)W44.CB, (T0302)Q105.CB) [> 3.6836 = 6.1394 < 7.9812] w=0.7733 to align # Constraint # added constraint: constraint((T0302)W44.CB, (T0302)V108.CB) [> 3.3912 = 5.6519 < 7.3475] w=0.7733 to align # Constraint # added constraint: constraint((T0302)C47.CB, (T0302)F101.CB) [> 2.8122 = 4.6870 < 6.0931] w=0.7733 to align # Constraint # added constraint: constraint((T0302)F28.CB, (T0302)I41.CB) [> 4.0026 = 6.6709 < 8.6722] w=0.7733 to align # Constraint # added constraint: constraint((T0302)D49.CB, (T0302)K62.CB) [> 4.3793 = 7.2989 < 9.4885] w=0.7733 to align # Constraint # added constraint: constraint((T0302)I41.CB, (T0302)M112.CB) [> 4.0917 = 6.8195 < 8.8653] w=0.7733 to align # Constraint # added constraint: constraint((T0302)W44.CB, (T0302)M112.CB) [> 4.1744 = 6.9574 < 9.0446] w=0.7733 to align # Constraint # added constraint: constraint((T0302)E39.CB, (T0302)V79.CB) [> 3.1265 = 5.2108 < 6.7740] w=0.7733 to align # Constraint # added constraint: constraint((T0302)N40.CB, (T0302)V79.CB) [> 3.5474 = 5.9124 < 7.6861] w=0.7733 to align # Constraint # added constraint: constraint((T0302)E42.CB, (T0302)K77.CB) [> 3.8623 = 6.4373 < 8.3684] w=0.7733 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)V79.CB) [> 3.0144 = 5.0240 < 6.5312] w=0.7733 to align # Constraint # added constraint: constraint((T0302)F70.CB, (T0302)V79.CB) [> 3.0346 = 5.0577 < 6.5750] w=0.7733 to align # Constraint # added constraint: constraint((T0302)A46.CB, (T0302)K69.CB) [> 4.5586 = 7.5976 < 9.8769] w=0.7733 to align # Constraint # added constraint: constraint((T0302)F15.CB, (T0302)Y117.CB) [> 3.1463 = 5.2438 < 6.8169] w=0.7475 to align # Constraint # added constraint: constraint((T0302)L32.CB, (T0302)S116.CB) [> 3.7781 = 6.2968 < 8.1859] w=0.7410 to align # Constraint # added constraint: constraint((T0302)F31.CB, (T0302)I125.CB) [> 3.5418 = 5.9030 < 7.6739] w=0.7380 to align # Constraint # added constraint: constraint((T0302)L81.CB, (T0302)V108.CB) [> 4.2284 = 7.0473 < 9.1615] w=0.7267 to align # Constraint # added constraint: constraint((T0302)L19.CB, (T0302)F28.CB) [> 3.9722 = 6.6203 < 8.6064] w=0.6766 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)S100.CB) [> 3.5025 = 5.8375 < 7.5887] w=0.6766 to align # Constraint # added constraint: constraint((T0302)V88.CB, (T0302)A103.CB) [> 3.4370 = 5.7283 < 7.4467] w=0.6766 to align # Constraint # added constraint: constraint((T0302)W11.CB, (T0302)G24.CA) [> 3.5513 = 5.9189 < 7.6946] w=0.6766 to align # Constraint # added constraint: constraint((T0302)W11.CB, (T0302)H21.CB) [> 3.8930 = 6.4883 < 8.4348] w=0.6766 to align # Constraint # added constraint: constraint((T0302)L81.CB, (T0302)R107.CB) [> 3.2618 = 5.4363 < 7.0671] w=0.6766 to align # Constraint # added constraint: constraint((T0302)L81.CB, (T0302)A104.CB) [> 3.4230 = 5.7049 < 7.4164] w=0.6766 to align # Constraint # added constraint: constraint((T0302)Y67.CB, (T0302)T90.CB) [> 4.3387 = 7.2311 < 9.4005] w=0.6766 to align # Constraint # added constraint: constraint((T0302)F15.CB, (T0302)Y109.CB) [> 4.2815 = 7.1359 < 9.2766] w=0.6766 to align # Constraint # added constraint: constraint((T0302)I59.CB, (T0302)L98.CB) [> 4.1707 = 6.9511 < 9.0364] w=0.6766 to align # Constraint # added constraint: constraint((T0302)V79.CB, (T0302)V108.CB) [> 3.6517 = 6.0862 < 7.9120] w=0.6766 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)K77.CB) [> 4.3254 = 7.2090 < 9.3717] w=0.6766 to align # Constraint # added constraint: constraint((T0302)W44.CB, (T0302)Y109.CB) [> 3.7529 = 6.2548 < 8.1313] w=0.6766 to align # Constraint # added constraint: constraint((T0302)S37.CB, (T0302)S116.CB) [> 3.6416 = 6.0694 < 7.8902] w=0.6444 to align # Constraint # added constraint: constraint((T0302)E35.CB, (T0302)R119.CB) [> 4.4815 = 7.4691 < 9.7099] w=0.6444 to align # Constraint # added constraint: constraint((T0302)E35.CB, (T0302)S116.CB) [> 4.0494 = 6.7490 < 8.7736] w=0.6444 to align # Constraint # added constraint: constraint((T0302)F31.CB, (T0302)S116.CB) [> 4.4008 = 7.3347 < 9.5352] w=0.6444 to align # Constraint # added constraint: constraint((T0302)L18.CB, (T0302)Y117.CB) [> 4.3419 = 7.2365 < 9.4075] w=0.6444 to align # Constraint # added constraint: constraint((T0302)N40.CB, (T0302)S116.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.6444 to align # Constraint # added constraint: constraint((T0302)A27.CB, (T0302)I125.CB) [> 3.4404 = 5.7341 < 7.4543] w=0.6414 to align # Constraint # added constraint: constraint((T0302)F31.CB, (T0302)Y126.CB) [> 4.2890 = 7.1483 < 9.2928] w=0.6414 to align # Constraint # added constraint: constraint((T0302)S53.CB, (T0302)K62.CB) [> 3.9995 = 6.6658 < 8.6656] w=0.6289 to align # Constraint # added constraint: constraint((T0302)L18.CB, (T0302)F120.CB) [> 4.6174 = 7.6957 < 10.0044] w=0.5799 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)S92.CB) [> 4.5555 = 7.5925 < 9.8702] w=0.5799 to align # Constraint # added constraint: constraint((T0302)F28.CB, (T0302)S116.CB) [> 4.6533 = 7.7554 < 10.0820] w=0.5799 to align # Constraint # added constraint: constraint((T0302)K51.CB, (T0302)F101.CB) [> 4.4034 = 7.3391 < 9.5408] w=0.5799 to align # Constraint # added constraint: constraint((T0302)L25.CB, (T0302)I45.CB) [> 4.5388 = 7.5646 < 9.8340] w=0.5799 to align # Constraint # added constraint: constraint((T0302)L19.CB, (T0302)W44.CB) [> 4.4367 = 7.3945 < 9.6129] w=0.5799 to align # Constraint # added constraint: constraint((T0302)N40.CB, (T0302)N80.CB) [> 4.5480 = 7.5799 < 9.8539] w=0.5799 to align # Constraint # added constraint: constraint((T0302)N80.CB, (T0302)L111.CB) [> 3.5828 = 5.9714 < 7.7628] w=0.5799 to align # Constraint # added constraint: constraint((T0302)C47.CB, (T0302)V108.CB) [> 4.4739 = 7.4565 < 9.6934] w=0.5754 to align # Constraint # added constraint: constraint((T0302)S37.CB, (T0302)M112.CB) [> 4.5811 = 7.6351 < 9.9257] w=0.5477 to align # Constraint # added constraint: constraint((T0302)L32.CB, (T0302)F120.CB) [> 4.6760 = 7.7933 < 10.1312] w=0.5477 to align # Constraint # added constraint: constraint((T0302)F50.CB, (T0302)S100.CB) [> 4.4952 = 7.4920 < 9.7397] w=0.4833 to align # Constraint # added constraint: constraint((T0302)L32.CB, (T0302)M112.CB) [> 4.5785 = 7.6308 < 9.9201] w=0.4833 to align # Constraint # added constraint: constraint((T0302)A27.CB, (T0302)Y126.CB) [> 4.1883 = 6.9804 < 9.0745] w=0.4833 to align # Constraint # added constraint: constraint((T0302)L25.CB, (T0302)I41.CB) [> 4.2502 = 7.0837 < 9.2088] w=0.4833 to align # Constraint # added constraint: constraint((T0302)W11.CB, (T0302)Y126.CB) [> 4.4112 = 7.3520 < 9.5577] w=0.4833 to align # Constraint # added constraint: constraint((T0302)G12.CA, (T0302)L121.CB) [> 3.4202 = 5.7003 < 7.4103] w=0.4833 to align # Constraint # added constraint: constraint((T0302)V79.CB, (T0302)A104.CB) [> 4.4262 = 7.3771 < 9.5902] w=0.4833 to align # Constraint # added constraint: constraint((T0302)F28.CB, (T0302)Y117.CB) [> 4.5341 = 7.5568 < 9.8239] w=0.4511 to align # Constraint # added constraint: constraint((T0302)A27.CB, (T0302)L129.CB) [> 3.8920 = 6.4867 < 8.4327] w=0.3866 to align # Constraint # added constraint: constraint((T0302)K64.CB, (T0302)P96.CB) [> 4.3967 = 7.3279 < 9.5262] w=0.3866 to align # Constraint # added constraint: constraint((T0302)W11.CB, (T0302)L121.CB) [> 4.4965 = 7.4942 < 9.7425] w=0.3866 to align # Constraint # added constraint: constraint((T0302)V88.CB, (T0302)A104.CB) [> 4.6322 = 7.7204 < 10.0365] w=0.3866 to align # Constraint # added constraint: constraint((T0302)V79.CB, (T0302)L111.CB) [> 4.6583 = 7.7638 < 10.0929] w=0.3866 to align # Constraint # added constraint: constraint((T0302)A8.CB, (T0302)M130.CB) [> 3.1405 = 5.2341 < 6.8043] w=0.3222 to align # Constraint # added constraint: constraint((T0302)E7.CB, (T0302)G24.CA) [> 4.4407 = 7.4012 < 9.6216] w=0.2900 to align # Constraint # added constraint: constraint((T0302)A8.CB, (T0302)L129.CB) [> 3.1249 = 5.2081 < 6.7706] w=0.2900 to align # Constraint # added constraint: constraint((T0302)L19.CB, (T0302)I45.CB) [> 4.4170 = 7.3617 < 9.5702] w=0.2900 to align # Constraint # added constraint: constraint((T0302)Y67.CB, (T0302)F101.CB) [> 4.3225 = 7.2042 < 9.3654] w=0.2267 to align # Constraint # added constraint: constraint((T0302)V3.CB, (T0302)G24.CA) [> 4.6294 = 7.7157 < 10.0304] w=0.1933 to align # Constraint # added constraint: constraint((T0302)V3.CB, (T0302)D23.CB) [> 3.1201 = 5.2002 < 6.7603] w=0.1933 to align # Constraint # added constraint: constraint((T0302)L19.CB, (T0302)I41.CB) [> 4.0459 = 6.7432 < 8.7662] w=0.1933 to align # Constraint # added constraint: constraint((T0302)H60.CB, (T0302)T94.CB) [> 3.2030 = 5.3383 < 6.9398] w=0.1933 to align # Constraint # added constraint: constraint((T0302)V79.CB, (T0302)R107.CB) [> 4.5451 = 7.5752 < 9.8478] w=0.1933 to align # Constraint # added constraint: constraint((T0302)A63.CB, (T0302)T97.CB) [> 3.8150 = 6.3584 < 8.2659] w=0.1933 to align # Constraint # added constraint: constraint((T0302)I71.CB, (T0302)I93.CB) [> 4.4763 = 7.4605 < 9.6986] w=0.1933 to align # Constraint # added constraint: constraint((T0302)G12.CA, (T0302)Y126.CB) [> 4.3586 = 7.2643 < 9.4436] w=0.1933 to align # Constraint # added constraint: constraint((T0302)I71.CB, (T0302)T85.CB) [> 4.6044 = 7.6740 < 9.9762] w=0.1915 to align # Constraint # added constraint: constraint((T0302)F36.CB, (T0302)S116.CB) [> 3.7343 = 6.2238 < 8.0910] w=0.1611 to align # Constraint # added constraint: constraint((T0302)G24.CA, (T0302)L129.CB) [> 3.7856 = 6.3094 < 8.2022] w=0.1581 to align # Constraint # added constraint: constraint((T0302)F36.CB, (T0302)D115.CB) [> 3.3777 = 5.6294 < 7.3183] w=0.1581 to align # Constraint # added constraint: constraint((T0302)L81.CB, (T0302)L111.CB) [> 3.9433 = 6.5722 < 8.5438] w=0.1468 to align # Constraint # added constraint: constraint((T0302)Q72.CB, (T0302)K86.CB) [> 4.4666 = 7.4443 < 9.6776] w=0.1301 to align # Constraint # added constraint: constraint((T0302)L18.CB, (T0302)S116.CB) [> 4.5365 = 7.5609 < 9.8291] w=0.1274 to align # Constraint # added constraint: constraint((T0302)I41.CB, (T0302)A63.CB) [> 3.2602 = 5.4337 < 7.0637] w=0.1221 to align # Constraint # added constraint: constraint((T0302)E39.CB, (T0302)N80.CB) [> 4.6429 = 7.7382 < 10.0596] w=0.0967 to align # Constraint # added constraint: constraint((T0302)E35.CB, (T0302)D115.CB) [> 4.6672 = 7.7786 < 10.1122] w=0.0967 to align # Constraint # added constraint: constraint((T0302)S92.CB, (T0302)D102.CB) [> 4.5162 = 7.5271 < 9.7852] w=0.0967 to align # Constraint # added constraint: constraint((T0302)D16.CB, (T0302)Y109.CB) [> 4.7698 = 7.9497 < 10.3346] w=0.0967 to align # Constraint # added constraint: constraint((T0302)S37.CB, (T0302)V79.CB) [> 4.7268 = 7.8780 < 10.2414] w=0.0967 to align # Constraint # added constraint: constraint((T0302)F15.CB, (T0302)S116.CB) [> 4.0714 = 6.7856 < 8.8213] w=0.0967 to align # Constraint # added constraint: constraint((T0302)S116.CB, (T0302)L127.CB) [> 3.8971 = 6.4952 < 8.4437] w=0.0967 to align # Constraint # added constraint: constraint((T0302)T85.CB, (T0302)S100.CB) [> 3.6359 = 6.0599 < 7.8778] w=0.0967 to align # Constraint # added constraint: constraint((T0302)F36.CB, (T0302)R119.CB) [> 4.3659 = 7.2765 < 9.4594] w=0.0967 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)M112.CB) [> 3.4146 = 5.6911 < 7.3984] w=0.0966 to align # Constraint # added constraint: constraint((T0302)D82.CB, (T0302)L111.CB) [> 2.9694 = 4.9489 < 6.4336] w=0.0966 to align # Constraint # added constraint: constraint((T0302)S100.CB, (T0302)M130.CB) [> 4.2879 = 7.1465 < 9.2904] w=0.0950 to align # Constraint # added constraint: constraint((T0302)C47.CB, (T0302)I59.CB) [> 4.7173 = 7.8621 < 10.2207] w=0.0910 to align # Constraint # added constraint: constraint((T0302)E35.CB, (T0302)C47.CB) [> 4.2416 = 7.0694 < 9.1902] w=0.0910 to align # Constraint # added constraint: constraint((T0302)H84.CB, (T0302)L98.CB) [> 3.1393 = 5.2321 < 6.8017] w=0.0910 to align # Constraint # added constraint: constraint((T0302)E78.CB, (T0302)I89.CB) [> 2.8860 = 4.8099 < 6.2529] w=0.0910 to align # Constraint # added constraint: constraint((T0302)K77.CB, (T0302)I89.CB) [> 4.3057 = 7.1762 < 9.3291] w=0.0910 to align # Constraint # added constraint: constraint((T0302)E48.CB, (T0302)I59.CB) [> 4.1864 = 6.9773 < 9.0705] w=0.0910 to align # Constraint # added constraint: constraint((T0302)D74.CB, (T0302)T85.CB) [> 4.2333 = 7.0556 < 9.1722] w=0.0706 to align # Constraint # added constraint: constraint((T0302)A27.CB, (T0302)M130.CB) [> 3.6503 = 6.0839 < 7.9090] w=0.0644 to align # Constraint # added constraint: constraint((T0302)L25.CB, (T0302)P76.CB) [> 4.1530 = 6.9216 < 8.9981] w=0.0614 to align # Constraint # added constraint: constraint((T0302)F43.CB, (T0302)Y67.CB) [> 3.2819 = 5.4698 < 7.1107] w=0.0614 to align # Constraint # added constraint: constraint((T0302)S14.CB, (T0302)S116.CB) [> 3.9811 = 6.6352 < 8.6258] w=0.0371 to align # Constraint # added constraint: constraint((T0302)A75.CB, (T0302)K86.CB) [> 4.3328 = 7.2213 < 9.3877] w=0.0322 to align # Constraint # added constraint: constraint((T0302)A27.CB, (T0302)E78.CB) [> 3.5430 = 5.9050 < 7.6765] w=0.0317 to align # Constraint # added constraint: constraint((T0302)K17.CB, (T0302)S116.CB) [> 3.3844 = 5.6407 < 7.3330] w=0.0307 to align # Constraint # added constraint: constraint((T0302)W11.CB, (T0302)A75.CB) [> 4.3056 = 7.1761 < 9.3289] w=0.0307 to align # Constraint # added constraint: constraint((T0302)A8.CB, (T0302)P76.CB) [> 4.1640 = 6.9399 < 9.0219] w=0.0307 to align # Constraint # added constraint: constraint((T0302)A8.CB, (T0302)A75.CB) [> 2.8631 = 4.7718 < 6.2034] w=0.0307 to align # Constraint # added constraint: constraint((T0302)E42.CB, (T0302)E68.CB) [> 2.4515 = 4.0858 < 5.3115] w=0.0303 to align # Constraint # added constraint: constraint((T0302)R30.CB, (T0302)E48.CB) [> 3.5049 = 5.8415 < 7.5940] w=0.0302 to align # Constraint # added constraint: constraint((T0302)V3.CB, (T0302)S116.CB) [> 4.0051 = 6.6751 < 8.6777] w=0.0097 to align # Constraint # added constraint: constraint((T0302)Q105.CB, (T0302)L121.CB) [> 3.8319 = 6.3865 < 8.3024] w=0.0097 to align # Constraint # added constraint: constraint((T0302)I93.CB, (T0302)M130.CB) [> 3.7222 = 6.2036 < 8.0647] w=0.0097 to align # Constraint # added constraint: constraint((T0302)I93.CB, (T0302)L129.CB) [> 2.1112 = 3.5186 < 4.5742] w=0.0097 to align # Constraint # added constraint: constraint((T0302)D82.CB, (T0302)S123.CB) [> 4.7482 = 7.9137 < 10.2879] w=0.0064 to align # Constraint # added constraint: constraint((T0302)F36.CB, (T0302)S100.CB) [> 3.2211 = 5.3684 < 6.9790] w=0.0064 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0302/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0302/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)T73.O and (T0302)D74.N only 0.000 apart, marking (T0302)D74.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)L111.O and (T0302)M112.N only 0.000 apart, marking (T0302)M112.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 256 model score -0.3424 model score -0.3863 model score -0.5428 model score -0.6788 model score -0.3126 model score -0.5789 model score -0.6473 model score -0.6832 model score -0.6714 model score -0.6596 model score -0.6634 model score -0.6352 model score -0.7114 model score -0.5246 model score -0.4698 model score -0.7631 model score -0.7083 model score 1.1558 model score 1.3165 model score -0.5987 model score 1.3368 model score 1.6202 model score 1.4410 model score 1.0412 model score 1.3486 model score -0.7537 model score -0.7147 model score -0.6736 model score -0.6237 model score -0.6626 model score -0.6567 model score -0.6871 model score -0.6967 model score -0.6632 model score -0.6100 model score -0.6743 model score -0.6245 model score -0.5340 model score -0.6655 model score -0.5951 model score -0.6440 model score -0.7114 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6536 model score -0.6632 model score -0.6442 model score -0.6503 model score -0.5029 model score -0.7433 model score -0.6100 model score -0.6743 model score -0.6742 model score -0.6967 model score -0.7637 model score -0.7278 model score 1.2260 model score -0.6512 model score 1.2383 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8900 model score 2.1116 model score 1.9945 model score 1.9969 model score 2.0547 model score -0.7150 model score -0.7428 model score -0.0331 model score 0.1663 model score 1.7551 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6382 model score -0.6742 model score -0.6366 model score -0.6674 model score -0.7038 model score -0.7359 model score -0.7184 model score -0.7184 model score -0.7249 model score -0.6936 model score -0.5125 model score -0.7215 model score -0.7682 model score -0.7682 model score -0.6652 model score -0.6453 model score -0.7223 model score -0.3975 model score -0.7042 model score -0.6509 model score -0.7169 model score -0.6566 model score -0.4704 model score -0.6956 model score 1.2771 model score -0.6747 model score -0.7181 model score -0.5437 model score -0.2816 model score -0.3039 model score -0.6645 model score -0.6509 model score -0.7452 model score -0.7457 model score -0.7429 model score -0.7495 model score -0.7455 model score -0.7364 model score -0.6733 model score -0.7452 model score -0.6861 model score -0.7457 model score -0.6887 model score -0.6887 model score -0.6664 model score -0.6471 model score -0.6589 model score -0.6659 model score -0.7223 model score -0.7223 model score -0.7322 model score -0.7223 model score -0.7322 model score -0.6581 model score -0.6471 model score -0.6887 model score -0.6887 model score -0.6887 model score -0.7144 model score -0.5135 model score -0.7193 model score -0.7144 model score -0.7224 model score -0.6626 model score -0.6605 model score -0.7235 model score -0.6389 model score -0.7035 model score -0.6476 model score -0.6693 model score -0.7195 model score -0.6597 model score -0.7208 model score -0.6703 model score -0.6670 model score -0.6756 model score -0.6723 model score -0.5407 model score -0.6194 model score -0.6050 model score -0.4649 model score -0.6554 model score -0.7067 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.5961 model score -0.6852 model score -0.7080 model score 1.4093 model score -0.3695 model score -0.7193 model score -0.6214 model score -0.6013 model score -0.5113 model score 1.3012 model score -0.7193 model score -0.6211 model score -0.6013 model score -0.5000 model score 1.3012 model score -0.7193 model score -0.6325 model score -0.6013 model score 1.3012 model score -0.2168 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.7050 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.7378 model score -0.7331 model score -0.7468 model score -0.7259 model score -0.7160 model score -0.7109 model score -0.6978 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.5244 model score -0.6893 model score -0.4794 model score -0.7199 model score -0.6914 model score 1.8216 model score 2.2719 model score 2.1994 model score 1.7688 model score 1.8190 model score -0.3890 model score -0.7173 model score -0.5329 model score -0.0670 model score -0.4977 model score -0.6459 model score -0.6892 model score -0.5955 model score -0.6748 model score -0.6032 model score -0.7223 model score -0.7223 model score -0.5197 model score -0.3596 model score 1.4605 model score 1.6964 model score -0.6129 model score -0.6966 weight: 0.8739 eval: -0.3424 min: -0.7682 max: 2.2719 weight: 0.8870 eval: -0.3863 min: -0.7682 max: 2.2719 weight: 0.9333 eval: -0.5428 min: -0.7682 max: 2.2719 weight: 0.9735 eval: -0.6788 min: -0.7682 max: 2.2719 weight: 0.8651 eval: -0.3126 min: -0.7682 max: 2.2719 weight: 0.9439 eval: -0.5789 min: -0.7682 max: 2.2719 weight: 0.9642 eval: -0.6473 min: -0.7682 max: 2.2719 weight: 0.9748 eval: -0.6832 min: -0.7682 max: 2.2719 weight: 0.9714 eval: -0.6714 min: -0.7682 max: 2.2719 weight: 0.9678 eval: -0.6596 min: -0.7682 max: 2.2719 weight: 0.9690 eval: -0.6634 min: -0.7682 max: 2.2719 weight: 0.9606 eval: -0.6352 min: -0.7682 max: 2.2719 weight: 0.9832 eval: -0.7114 min: -0.7682 max: 2.2719 weight: 0.9279 eval: -0.5246 min: -0.7682 max: 2.2719 weight: 0.9116 eval: -0.4698 min: -0.7682 max: 2.2719 weight: 0.9985 eval: -0.7631 min: -0.7682 max: 2.2719 weight: 0.9823 eval: -0.7083 min: -0.7682 max: 2.2719 weight: 0.4304 eval: 1.1558 min: -0.7682 max: 2.2719 weight: 0.3828 eval: 1.3165 min: -0.7682 max: 2.2719 weight: 0.9498 eval: -0.5987 min: -0.7682 max: 2.2719 weight: 0.3768 eval: 1.3368 min: -0.7682 max: 2.2719 weight: 0.2930 eval: 1.6202 min: -0.7682 max: 2.2719 weight: 0.3460 eval: 1.4410 min: -0.7682 max: 2.2719 weight: 0.4643 eval: 1.0412 min: -0.7682 max: 2.2719 weight: 0.3733 eval: 1.3486 min: -0.7682 max: 2.2719 weight: 0.9957 eval: -0.7537 min: -0.7682 max: 2.2719 weight: 0.9841 eval: -0.7147 min: -0.7682 max: 2.2719 weight: 0.9720 eval: -0.6736 min: -0.7682 max: 2.2719 weight: 0.9572 eval: -0.6237 min: -0.7682 max: 2.2719 weight: 0.9687 eval: -0.6626 min: -0.7682 max: 2.2719 weight: 0.9670 eval: -0.6567 min: -0.7682 max: 2.2719 weight: 0.9760 eval: -0.6871 min: -0.7682 max: 2.2719 weight: 0.9788 eval: -0.6967 min: -0.7682 max: 2.2719 weight: 0.9689 eval: -0.6632 min: -0.7682 max: 2.2719 weight: 0.9532 eval: -0.6100 min: -0.7682 max: 2.2719 weight: 0.9722 eval: -0.6743 min: -0.7682 max: 2.2719 weight: 0.9575 eval: -0.6245 min: -0.7682 max: 2.2719 weight: 0.9306 eval: -0.5340 min: -0.7682 max: 2.2719 weight: 0.9696 eval: -0.6655 min: -0.7682 max: 2.2719 weight: 0.9487 eval: -0.5951 min: -0.7682 max: 2.2719 weight: 0.9632 eval: -0.6440 min: -0.7682 max: 2.2719 weight: 0.9832 eval: -0.7114 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9661 eval: -0.6536 min: -0.7682 max: 2.2719 weight: 0.9689 eval: -0.6632 min: -0.7682 max: 2.2719 weight: 0.9633 eval: -0.6442 min: -0.7682 max: 2.2719 weight: 0.9651 eval: -0.6503 min: -0.7682 max: 2.2719 weight: 0.9215 eval: -0.5029 min: -0.7682 max: 2.2719 weight: 0.9926 eval: -0.7433 min: -0.7682 max: 2.2719 weight: 0.9532 eval: -0.6100 min: -0.7682 max: 2.2719 weight: 0.9722 eval: -0.6743 min: -0.7682 max: 2.2719 weight: 0.9722 eval: -0.6742 min: -0.7682 max: 2.2719 weight: 0.9788 eval: -0.6967 min: -0.7682 max: 2.2719 weight: 0.9987 eval: -0.7637 min: -0.7682 max: 2.2719 weight: 0.9880 eval: -0.7278 min: -0.7682 max: 2.2719 weight: 0.4096 eval: 1.2260 min: -0.7682 max: 2.2719 weight: 0.9654 eval: -0.6512 min: -0.7682 max: 2.2719 weight: 0.4060 eval: 1.2383 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.2131 eval: 1.8900 min: -0.7682 max: 2.2719 weight: 0.1475 eval: 2.1116 min: -0.7682 max: 2.2719 weight: 0.1821 eval: 1.9945 min: -0.7682 max: 2.2719 weight: 0.1814 eval: 1.9969 min: -0.7682 max: 2.2719 weight: 0.1643 eval: 2.0547 min: -0.7682 max: 2.2719 weight: 0.9843 eval: -0.7150 min: -0.7682 max: 2.2719 weight: 0.9925 eval: -0.7428 min: -0.7682 max: 2.2719 weight: 0.7824 eval: -0.0331 min: -0.7682 max: 2.2719 weight: 0.7233 eval: 0.1663 min: -0.7682 max: 2.2719 weight: 0.2530 eval: 1.7551 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9615 eval: -0.6382 min: -0.7682 max: 2.2719 weight: 0.9722 eval: -0.6742 min: -0.7682 max: 2.2719 weight: 0.9610 eval: -0.6366 min: -0.7682 max: 2.2719 weight: 0.9702 eval: -0.6674 min: -0.7682 max: 2.2719 weight: 0.9809 eval: -0.7038 min: -0.7682 max: 2.2719 weight: 0.9904 eval: -0.7359 min: -0.7682 max: 2.2719 weight: 0.9852 eval: -0.7184 min: -0.7682 max: 2.2719 weight: 0.9852 eval: -0.7184 min: -0.7682 max: 2.2719 weight: 0.9872 eval: -0.7249 min: -0.7682 max: 2.2719 weight: 0.9779 eval: -0.6936 min: -0.7682 max: 2.2719 weight: 0.9243 eval: -0.5125 min: -0.7682 max: 2.2719 weight: 0.9862 eval: -0.7215 min: -0.7682 max: 2.2719 weight: 1.0000 eval: -0.7682 min: -0.7682 max: 2.2719 weight: 1.0000 eval: -0.7682 min: -0.7682 max: 2.2719 weight: 0.9695 eval: -0.6652 min: -0.7682 max: 2.2719 weight: 0.9636 eval: -0.6453 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.8903 eval: -0.3975 min: -0.7682 max: 2.2719 weight: 0.9810 eval: -0.7042 min: -0.7682 max: 2.2719 weight: 0.9653 eval: -0.6509 min: -0.7682 max: 2.2719 weight: 0.9848 eval: -0.7169 min: -0.7682 max: 2.2719 weight: 0.9670 eval: -0.6566 min: -0.7682 max: 2.2719 weight: 0.9118 eval: -0.4704 min: -0.7682 max: 2.2719 weight: 0.9785 eval: -0.6956 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9723 eval: -0.6747 min: -0.7682 max: 2.2719 weight: 0.9852 eval: -0.7181 min: -0.7682 max: 2.2719 weight: 0.9335 eval: -0.5437 min: -0.7682 max: 2.2719 weight: 0.8560 eval: -0.2816 min: -0.7682 max: 2.2719 weight: 0.8625 eval: -0.3039 min: -0.7682 max: 2.2719 weight: 0.9693 eval: -0.6645 min: -0.7682 max: 2.2719 weight: 0.9653 eval: -0.6509 min: -0.7682 max: 2.2719 weight: 0.9932 eval: -0.7452 min: -0.7682 max: 2.2719 weight: 0.9933 eval: -0.7457 min: -0.7682 max: 2.2719 weight: 0.9925 eval: -0.7429 min: -0.7682 max: 2.2719 weight: 0.9944 eval: -0.7495 min: -0.7682 max: 2.2719 weight: 0.9933 eval: -0.7455 min: -0.7682 max: 2.2719 weight: 0.9906 eval: -0.7364 min: -0.7682 max: 2.2719 weight: 0.9719 eval: -0.6733 min: -0.7682 max: 2.2719 weight: 0.9932 eval: -0.7452 min: -0.7682 max: 2.2719 weight: 0.9757 eval: -0.6861 min: -0.7682 max: 2.2719 weight: 0.9933 eval: -0.7457 min: -0.7682 max: 2.2719 weight: 0.9765 eval: -0.6887 min: -0.7682 max: 2.2719 weight: 0.9765 eval: -0.6887 min: -0.7682 max: 2.2719 weight: 0.9699 eval: -0.6664 min: -0.7682 max: 2.2719 weight: 0.9642 eval: -0.6471 min: -0.7682 max: 2.2719 weight: 0.9676 eval: -0.6589 min: -0.7682 max: 2.2719 weight: 0.9697 eval: -0.6659 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.9893 eval: -0.7322 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.9893 eval: -0.7322 min: -0.7682 max: 2.2719 weight: 0.9674 eval: -0.6581 min: -0.7682 max: 2.2719 weight: 0.9642 eval: -0.6471 min: -0.7682 max: 2.2719 weight: 0.9765 eval: -0.6887 min: -0.7682 max: 2.2719 weight: 0.9765 eval: -0.6887 min: -0.7682 max: 2.2719 weight: 0.9765 eval: -0.6887 min: -0.7682 max: 2.2719 weight: 0.9841 eval: -0.7144 min: -0.7682 max: 2.2719 weight: 0.9246 eval: -0.5135 min: -0.7682 max: 2.2719 weight: 0.9855 eval: -0.7193 min: -0.7682 max: 2.2719 weight: 0.9841 eval: -0.7144 min: -0.7682 max: 2.2719 weight: 0.9865 eval: -0.7224 min: -0.7682 max: 2.2719 weight: 0.9687 eval: -0.6626 min: -0.7682 max: 2.2719 weight: 0.9681 eval: -0.6605 min: -0.7682 max: 2.2719 weight: 0.9868 eval: -0.7235 min: -0.7682 max: 2.2719 weight: 0.9617 eval: -0.6389 min: -0.7682 max: 2.2719 weight: 0.9808 eval: -0.7035 min: -0.7682 max: 2.2719 weight: 0.9643 eval: -0.6476 min: -0.7682 max: 2.2719 weight: 0.9707 eval: -0.6693 min: -0.7682 max: 2.2719 weight: 0.9856 eval: -0.7195 min: -0.7682 max: 2.2719 weight: 0.9679 eval: -0.6597 min: -0.7682 max: 2.2719 weight: 0.9860 eval: -0.7208 min: -0.7682 max: 2.2719 weight: 0.9710 eval: -0.6703 min: -0.7682 max: 2.2719 weight: 0.9700 eval: -0.6670 min: -0.7682 max: 2.2719 weight: 0.9726 eval: -0.6756 min: -0.7682 max: 2.2719 weight: 0.9716 eval: -0.6723 min: -0.7682 max: 2.2719 weight: 0.9326 eval: -0.5407 min: -0.7682 max: 2.2719 weight: 0.9559 eval: -0.6194 min: -0.7682 max: 2.2719 weight: 0.9517 eval: -0.6050 min: -0.7682 max: 2.2719 weight: 0.9102 eval: -0.4649 min: -0.7682 max: 2.2719 weight: 0.9666 eval: -0.6554 min: -0.7682 max: 2.2719 weight: 0.9818 eval: -0.7067 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9491 eval: -0.5961 min: -0.7682 max: 2.2719 weight: 0.9754 eval: -0.6852 min: -0.7682 max: 2.2719 weight: 0.9822 eval: -0.7080 min: -0.7682 max: 2.2719 weight: 0.3554 eval: 1.4093 min: -0.7682 max: 2.2719 weight: 0.8820 eval: -0.3695 min: -0.7682 max: 2.2719 weight: 0.9855 eval: -0.7193 min: -0.7682 max: 2.2719 weight: 0.9565 eval: -0.6214 min: -0.7682 max: 2.2719 weight: 0.9506 eval: -0.6013 min: -0.7682 max: 2.2719 weight: 0.9239 eval: -0.5113 min: -0.7682 max: 2.2719 weight: 0.3874 eval: 1.3012 min: -0.7682 max: 2.2719 weight: 0.9855 eval: -0.7193 min: -0.7682 max: 2.2719 weight: 0.9564 eval: -0.6211 min: -0.7682 max: 2.2719 weight: 0.9506 eval: -0.6013 min: -0.7682 max: 2.2719 weight: 0.9206 eval: -0.5000 min: -0.7682 max: 2.2719 weight: 0.3874 eval: 1.3012 min: -0.7682 max: 2.2719 weight: 0.9855 eval: -0.7193 min: -0.7682 max: 2.2719 weight: 0.9598 eval: -0.6325 min: -0.7682 max: 2.2719 weight: 0.9506 eval: -0.6013 min: -0.7682 max: 2.2719 weight: 0.3874 eval: 1.3012 min: -0.7682 max: 2.2719 weight: 0.8367 eval: -0.2168 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9813 eval: -0.7050 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9910 eval: -0.7378 min: -0.7682 max: 2.2719 weight: 0.9896 eval: -0.7331 min: -0.7682 max: 2.2719 weight: 0.9937 eval: -0.7468 min: -0.7682 max: 2.2719 weight: 0.9875 eval: -0.7259 min: -0.7682 max: 2.2719 weight: 0.9845 eval: -0.7160 min: -0.7682 max: 2.2719 weight: 0.9830 eval: -0.7109 min: -0.7682 max: 2.2719 weight: 0.9792 eval: -0.6978 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.3945 eval: 1.2771 min: -0.7682 max: 2.2719 weight: 0.9278 eval: -0.5244 min: -0.7682 max: 2.2719 weight: 0.9766 eval: -0.6893 min: -0.7682 max: 2.2719 weight: 0.9145 eval: -0.4794 min: -0.7682 max: 2.2719 weight: 0.9857 eval: -0.7199 min: -0.7682 max: 2.2719 weight: 0.9773 eval: -0.6914 min: -0.7682 max: 2.2719 weight: 0.2333 eval: 1.8216 min: -0.7682 max: 2.2719 weight: 0.1000 eval: 2.2719 min: -0.7682 max: 2.2719 weight: 0.1215 eval: 2.1994 min: -0.7682 max: 2.2719 weight: 0.2490 eval: 1.7688 min: -0.7682 max: 2.2719 weight: 0.2341 eval: 1.8190 min: -0.7682 max: 2.2719 weight: 0.8877 eval: -0.3890 min: -0.7682 max: 2.2719 weight: 0.9849 eval: -0.7173 min: -0.7682 max: 2.2719 weight: 0.9303 eval: -0.5329 min: -0.7682 max: 2.2719 weight: 0.7924 eval: -0.0670 min: -0.7682 max: 2.2719 weight: 0.9199 eval: -0.4977 min: -0.7682 max: 2.2719 weight: 0.9638 eval: -0.6459 min: -0.7682 max: 2.2719 weight: 0.9766 eval: -0.6892 min: -0.7682 max: 2.2719 weight: 0.9489 eval: -0.5955 min: -0.7682 max: 2.2719 weight: 0.9723 eval: -0.6748 min: -0.7682 max: 2.2719 weight: 0.9511 eval: -0.6032 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.9864 eval: -0.7223 min: -0.7682 max: 2.2719 weight: 0.9264 eval: -0.5197 min: -0.7682 max: 2.2719 weight: 0.8790 eval: -0.3596 min: -0.7682 max: 2.2719 weight: 0.3402 eval: 1.4605 min: -0.7682 max: 2.2719 weight: 0.2704 eval: 1.6964 min: -0.7682 max: 2.2719 weight: 0.9540 eval: -0.6129 min: -0.7682 max: 2.2719 weight: 0.9788 eval: -0.6966 min: -0.7682 max: 2.2719 Adding 1960 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -199.2436, CN propb: -199.2436 weights: 0.5268 constraints: 163 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 163 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 163 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 1797 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 1797 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 1960 # command: