# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0300/ # command:# Making conformation for sequence T0300 numbered 1 through 102 Created new target T0300 from T0300.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0300/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0300/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0300//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0300/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0300/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0300/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y8aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0300 read from 1y8aA/merged-good-all-a2m # 1y8aA read from 1y8aA/merged-good-all-a2m # found chain 1y8aA in training set T0300 26 :TLKQKVKS 1y8aA 108 :QYLRRTAS # choosing archetypes in rotamer library T0300 39 :SDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1y8aA 129 :DFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFS T0300 82 :EQELTSLLQSLT 1y8aA 168 :RSEVRKIVESVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3 Number of alignments=1 # 1y8aA read from 1y8aA/merged-good-all-a2m # found chain 1y8aA in training set T0300 24 :NKTLKQKVKSSGAV 1y8aA 86 :AEKAMATLQERWTP T0300 39 :SDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1y8aA 129 :DFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFS T0300 82 :EQELTSLLQSLT 1y8aA 168 :RSEVRKIVESVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6 Number of alignments=2 # 1y8aA read from 1y8aA/merged-good-all-a2m # found chain 1y8aA in training set T0300 25 :KTLKQKVKS 1y8aA 87 :EKAMATLQE T0300 34 :SGAVS 1y8aA 116 :MIGVR T0300 39 :SDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1y8aA 129 :DFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFS T0300 82 :EQELTSLLQSLT 1y8aA 168 :RSEVRKIVESVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=10 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fmhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fmhA expands to /projects/compbio/data/pdb/1fmh.pdb.gz 1fmhA:# T0300 read from 1fmhA/merged-good-all-a2m # 1fmhA read from 1fmhA/merged-good-all-a2m # adding 1fmhA to template set # found chain 1fmhA in template set Warning: unaligning (T0300)T9 because first residue in template chain is (1fmhA)E1 T0300 10 :YEEMVKEVERLKLENKTLKQKVKS 1fmhA 2 :VAQLEKEVAQAEAENYQLEQEVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=11 Number of alignments=4 # 1fmhA read from 1fmhA/merged-good-all-a2m # found chain 1fmhA in template set Warning: unaligning (T0300)T9 because first residue in template chain is (1fmhA)E1 T0300 10 :YEEMVKEVERLKLENKTLKQKVKS 1fmhA 2 :VAQLEKEVAQAEAENYQLEQEVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=12 Number of alignments=5 # 1fmhA read from 1fmhA/merged-good-all-a2m # found chain 1fmhA in template set Warning: unaligning (T0300)T9 because first residue in template chain is (1fmhA)E1 T0300 10 :YEEMVKEVERLKLENKTLKQKVKS 1fmhA 2 :VAQLEKEVAQAEAENYQLEQEVAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=13 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cs4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300/1cs4A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0300/1cs4A/merged-good-all-a2m.gz for input Trying 1cs4A/merged-good-all-a2m Error: Couldn't open file 1cs4A/merged-good-all-a2m or 1cs4A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fmhB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fmhB expands to /projects/compbio/data/pdb/1fmh.pdb.gz 1fmhB:# T0300 read from 1fmhB/merged-good-all-a2m # 1fmhB read from 1fmhB/merged-good-all-a2m # adding 1fmhB to template set # found chain 1fmhB in template set T0300 12 :EMVKEVERLKLENKTLKQKVK 1fmhB 4 :ALKKRVQALKARNYAAKQKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=14 Number of alignments=7 # 1fmhB read from 1fmhB/merged-good-all-a2m # found chain 1fmhB in template set T0300 12 :EMVKEVERLKLENKTLKQKVK 1fmhB 4 :ALKKRVQALKARNYAAKQKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=15 Number of alignments=8 # 1fmhB read from 1fmhB/merged-good-all-a2m # found chain 1fmhB in template set Warning: unaligning (T0300)T9 because first residue in template chain is (1fmhB)E1 T0300 10 :YEEMVKEVERLKLENKTLKQKVK 1fmhB 2 :VQALKKRVQALKARNYAAKQKVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=16 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1culA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1culA expands to /projects/compbio/data/pdb/1cul.pdb.gz 1culA:# T0300 read from 1culA/merged-good-all-a2m # 1culA read from 1culA/merged-good-all-a2m # adding 1culA to template set # found chain 1culA in template set T0300 10 :YEEMVKEVERLKLENK 1culA 416 :LNELFARFDKLAAENH T0300 39 :SDDS 1culA 449 :PEAR T0300 47 :AKRESIIVSSSRALGAVAMRKIEAK 1culA 453 :ADHAHCCVEMGMDMIEAISLVREMT T0300 91 :SLTLRVDV 1culA 480 :NVNMRVGI Number of specific fragments extracted= 4 number of extra gaps= 0 total=20 Number of alignments=10 # 1culA read from 1culA/merged-good-all-a2m # found chain 1culA in template set T0300 10 :YEEMVKEVERLKLENK 1culA 416 :LNELFARFDKLAAENH T0300 39 :SDDS 1culA 449 :PEAR T0300 47 :AKRESIIVSSSRALGAVAMRKIEAK 1culA 453 :ADHAHCCVEMGMDMIEAISLVREMT T0300 91 :SLTLRVDV 1culA 480 :NVNMRVGI Number of specific fragments extracted= 4 number of extra gaps= 0 total=24 Number of alignments=11 # 1culA read from 1culA/merged-good-all-a2m # found chain 1culA in template set T0300 10 :YEEMVKEVERLKLENK 1culA 416 :LNELFARFDKLAAENH T0300 37 :VSSDD 1culA 448 :LPEAR T0300 47 :AKRESIIVSSSRALGAVAMRKIEAK 1culA 453 :ADHAHCCVEMGMDMIEAISLVREMT T0300 91 :SLTLRVDV 1culA 480 :NVNMRVGI Number of specific fragments extracted= 4 number of extra gaps= 0 total=28 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aucA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2aucA expands to /projects/compbio/data/pdb/2auc.pdb.gz 2aucA:Skipped atom 32, because occupancy 0.5 <= existing 0.500 in 2aucA Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 40, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 46, because occupancy 0.500 <= existing 0.500 in 2aucA Skipped atom 48, because occupancy 0.500 <= existing 0.500 in 2aucA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0300 read from 2aucA/merged-good-all-a2m # 2aucA read from 2aucA/merged-good-all-a2m # adding 2aucA to template set # found chain 2aucA in template set Warning: unaligning (T0300)K5 because first residue in template chain is (2aucA)N88 T0300 6 :PDKTYEEMVKEVER 2aucA 89 :GKLRIEDASHNARK T0300 25 :KTLKQKVKS 2aucA 109 :STDEKKIRD T0300 34 :SGA 2aucA 120 :GDS T0300 44 :LTAA 2aucA 123 :LTYE T0300 49 :RESIIVSSSRALGAV 2aucA 127 :QYLEYLTMCVHDRDN T0300 65 :MRKIEAKVRSRA 2aucA 142 :MEELIKMFSHFD T0300 77 :AKAVTEQELTSLLQS 2aucA 157 :SGFLTKNQMKNILTT Number of specific fragments extracted= 7 number of extra gaps= 0 total=35 Number of alignments=13 # 2aucA read from 2aucA/merged-good-all-a2m # found chain 2aucA in template set Warning: unaligning (T0300)K5 because first residue in template chain is (2aucA)N88 T0300 6 :PDKTYEEMVKEVER 2aucA 89 :GKLRIEDASHNARK T0300 25 :KTLKQKVKS 2aucA 109 :STDEKKIRD T0300 34 :SGA 2aucA 120 :GDS T0300 44 :LTAA 2aucA 123 :LTYE T0300 49 :RESIIVSSSRALGAV 2aucA 127 :QYLEYLTMCVHDRDN T0300 65 :MRKIEAKVRSRA 2aucA 142 :MEELIKMFSHFD T0300 77 :AKAVTEQELTSLLQS 2aucA 157 :SGFLTKNQMKNILTT Number of specific fragments extracted= 7 number of extra gaps= 0 total=42 Number of alignments=14 # 2aucA read from 2aucA/merged-good-all-a2m # found chain 2aucA in template set Warning: unaligning (T0300)K5 because first residue in template chain is (2aucA)N88 T0300 6 :PDKTYEEMVKEVER 2aucA 89 :GKLRIEDASHNARK T0300 25 :KTLKQKVKS 2aucA 109 :STDEKKIRD T0300 34 :S 2aucA 120 :G T0300 42 :SILTA 2aucA 121 :DSLTY T0300 48 :KRESIIVSSSRALGAV 2aucA 126 :EQYLEYLTMCVHDRDN T0300 65 :MRKIEAKVRSRA 2aucA 142 :MEELIKMFSHFD T0300 77 :AKAVTEQELTSLLQS 2aucA 157 :SGFLTKNQMKNILTT Number of specific fragments extracted= 7 number of extra gaps= 0 total=49 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w4xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w4xA expands to /projects/compbio/data/pdb/1w4x.pdb.gz 1w4xA:Skipped atom 2639, because occupancy 0.500 <= existing 0.500 in 1w4xA Skipped atom 2641, because occupancy 0.500 <= existing 0.500 in 1w4xA Skipped atom 2643, because occupancy 0.500 <= existing 0.500 in 1w4xA Skipped atom 2645, because occupancy 0.500 <= existing 0.500 in 1w4xA Skipped atom 2647, because occupancy 0.500 <= existing 0.500 in 1w4xA Skipped atom 2649, because occupancy 0.500 <= existing 0.500 in 1w4xA # T0300 read from 1w4xA/merged-good-all-a2m # 1w4xA read from 1w4xA/merged-good-all-a2m # adding 1w4xA to template set # found chain 1w4xA in template set T0300 4 :KKPDKTYEE 1w4xA 226 :RNAPLDPEF T0300 17 :VERLKLENKTLKQKVKS 1w4xA 235 :LADLKKRYAEFREESRN T0300 34 :S 1w4xA 255 :G T0300 35 :GAVSSDDSILTAAKRESIIVSSSRA 1w4xA 259 :YQGPKSALEVSDEELVETLERYWQE T0300 62 :AVAMRKIEAKVRSRAAKAVTEQELTSLL 1w4xA 299 :RDANERVAEFIRNKIRNTVRDPEVAERL Number of specific fragments extracted= 5 number of extra gaps= 0 total=54 Number of alignments=16 # 1w4xA read from 1w4xA/merged-good-all-a2m # found chain 1w4xA in template set T0300 4 :KKPDKTYEE 1w4xA 226 :RNAPLDPEF T0300 17 :VERLKLENKTLKQKVKS 1w4xA 235 :LADLKKRYAEFREESRN T0300 34 :S 1w4xA 255 :G T0300 35 :GAVSSDDSILTAAKRESIIVSSSRA 1w4xA 259 :YQGPKSALEVSDEELVETLERYWQE T0300 62 :AVAMRKIEAKVRSRAAKAVTEQELTSLL 1w4xA 299 :RDANERVAEFIRNKIRNTVRDPEVAERL Number of specific fragments extracted= 5 number of extra gaps= 0 total=59 Number of alignments=17 # 1w4xA read from 1w4xA/merged-good-all-a2m # found chain 1w4xA in template set T0300 4 :KKPDKTYEE 1w4xA 226 :RNAPLDPEF T0300 17 :VERLKLENKTLKQKVKS 1w4xA 235 :LADLKKRYAEFREESRN T0300 34 :SGAVSSDDSILTAAKRESIIVSSSRA 1w4xA 258 :RYQGPKSALEVSDEELVETLERYWQE T0300 62 :AVAMRKIEAKVRSRAAKAVTEQELTSLL 1w4xA 299 :RDANERVAEFIRNKIRNTVRDPEVAERL Number of specific fragments extracted= 4 number of extra gaps= 0 total=63 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j8bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0300 read from 1j8bA/merged-good-all-a2m # 1j8bA read from 1j8bA/merged-good-all-a2m # found chain 1j8bA in training set Warning: unaligning (T0300)K78 because last residue in template chain is (1j8bA)G98 T0300 18 :ERLKLENKTLKQKVKS 1j8bA 15 :QQMQEKMQKMQEEIAQ T0300 34 :SGA 1j8bA 48 :GAH T0300 38 :SSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1j8bA 58 :DPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTA Number of specific fragments extracted= 3 number of extra gaps= 0 total=66 Number of alignments=19 # 1j8bA read from 1j8bA/merged-good-all-a2m # found chain 1j8bA in training set Warning: unaligning (T0300)K78 because last residue in template chain is (1j8bA)G98 T0300 18 :ERLKLENKTLKQKVKS 1j8bA 15 :QQMQEKMQKMQEEIAQ T0300 34 :SGA 1j8bA 48 :GAH T0300 38 :SSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1j8bA 58 :DPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTA Number of specific fragments extracted= 3 number of extra gaps= 0 total=69 Number of alignments=20 # 1j8bA read from 1j8bA/merged-good-all-a2m # found chain 1j8bA in training set Warning: unaligning (T0300)K78 because last residue in template chain is (1j8bA)G98 T0300 18 :ERLKLENKTLKQKVKS 1j8bA 15 :QQMQEKMQKMQEEIAQ T0300 37 :VSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAA 1j8bA 57 :IDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTA Number of specific fragments extracted= 2 number of extra gaps= 0 total=71 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f45B/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f45B expands to /projects/compbio/data/pdb/1f45.pdb.gz 1f45B:# T0300 read from 1f45B/merged-good-all-a2m # 1f45B read from 1f45B/merged-good-all-a2m # adding 1f45B to template set # found chain 1f45B in template set Warning: unaligning (T0300)D40 because of BadResidue code BAD_PEPTIDE in next template residue (1f45B)R129 Warning: unaligning (T0300)D41 because of BadResidue code BAD_PEPTIDE at template residue (1f45B)R129 Warning: unaligning (T0300)I43 because of BadResidue code BAD_PEPTIDE in next template residue (1f45B)F132 Warning: unaligning (T0300)L44 because of BadResidue code BAD_PEPTIDE at template residue (1f45B)F132 T0300 12 :EMVKEVERLKLENKTLKQKVKS 1f45B 104 :SIYEDLKMYQVEFKTMNAKLLM T0300 38 :SS 1f45B 126 :DP T0300 42 :S 1f45B 130 :Q T0300 49 :RESIIVSSSRALGAV 1f45B 133 :LDQNMLAVIDELMQA T0300 64 :AMRKIEAKVRSRAAKAV 1f45B 169 :TKIKLCILLHAFRIRAV T0300 84 :ELTSLL 1f45B 186 :TIDRVM Number of specific fragments extracted= 6 number of extra gaps= 2 total=77 Number of alignments=22 # 1f45B read from 1f45B/merged-good-all-a2m # found chain 1f45B in template set Warning: unaligning (T0300)D40 because of BadResidue code BAD_PEPTIDE in next template residue (1f45B)R129 Warning: unaligning (T0300)D41 because of BadResidue code BAD_PEPTIDE at template residue (1f45B)R129 Warning: unaligning (T0300)I43 because of BadResidue code BAD_PEPTIDE in next template residue (1f45B)F132 Warning: unaligning (T0300)L44 because of BadResidue code BAD_PEPTIDE at template residue (1f45B)F132 T0300 13 :MVKEVERLKLENKTLKQKVKSS 1f45B 105 :IYEDLKMYQVEFKTMNAKLLMD T0300 39 :S 1f45B 127 :P T0300 42 :S 1f45B 130 :Q T0300 49 :RESIIVSSSRALGAV 1f45B 133 :LDQNMLAVIDELMQA T0300 64 :AMRKIEAKVRSRAAKAV 1f45B 169 :TKIKLCILLHAFRIRAV T0300 84 :ELTSLL 1f45B 186 :TIDRVM Number of specific fragments extracted= 6 number of extra gaps= 2 total=83 Number of alignments=23 # 1f45B read from 1f45B/merged-good-all-a2m # found chain 1f45B in template set Warning: unaligning (T0300)A36 because of BadResidue code BAD_PEPTIDE in next template residue (1f45B)R129 Warning: unaligning (T0300)V37 because of BadResidue code BAD_PEPTIDE at template residue (1f45B)R129 T0300 11 :EEMVKEVERLKLENKTLKQKVKSSG 1f45B 103 :SSIYEDLKMYQVEFKTMNAKLLMDP T0300 38 :S 1f45B 130 :Q T0300 49 :RESIIVSSSRALGAV 1f45B 133 :LDQNMLAVIDELMQA T0300 64 :AMRKIEAKVRSRAAKAV 1f45B 169 :TKIKLCILLHAFRIRAV T0300 84 :ELTSLLQ 1f45B 186 :TIDRVMS Number of specific fragments extracted= 5 number of extra gaps= 1 total=88 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1guvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300/1guvA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0300/1guvA/merged-good-all-a2m.gz for input Trying 1guvA/merged-good-all-a2m Error: Couldn't open file 1guvA/merged-good-all-a2m or 1guvA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hkmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300/1hkmA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0300/1hkmA/merged-good-all-a2m.gz for input Trying 1hkmA/merged-good-all-a2m Error: Couldn't open file 1hkmA/merged-good-all-a2m or 1hkmA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1og6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1og6A expands to /projects/compbio/data/pdb/1og6.pdb.gz 1og6A:# T0300 read from 1og6A/merged-good-all-a2m # 1og6A read from 1og6A/merged-good-all-a2m # adding 1og6A to template set # found chain 1og6A in template set T0300 5 :KPDK 1og6A 93 :ENVI T0300 9 :TYEEMVKEVERLKLEN 1og6A 102 :DRDHIIKSAEQSLINL T0300 33 :SSGAV 1og6A 118 :ATDHL T0300 38 :SSDDSILTAAK 1og6A 128 :HRPDPLMDADE T0300 53 :IVSSSRALGA 1og6A 139 :VADAFKHLHQ T0300 81 :TEQELTSLLQSLT 1og6A 161 :TPAQFALLQSRLP T0300 94 :LRVDVSM 1og6A 179 :NQVEISP Number of specific fragments extracted= 7 number of extra gaps= 0 total=95 Number of alignments=25 # 1og6A read from 1og6A/merged-good-all-a2m # found chain 1og6A in template set T0300 9 :TYEEMVKEVERLKLEN 1og6A 102 :DRDHIIKSAEQSLINL T0300 33 :SSGAV 1og6A 118 :ATDHL T0300 38 :SSDDSILTAAK 1og6A 128 :HRPDPLMDADE T0300 53 :IVSSSRALGA 1og6A 139 :VADAFKHLHQ T0300 81 :TEQELTSLLQSLT 1og6A 161 :TPAQFALLQSRLP T0300 94 :LRVDVSM 1og6A 179 :NQVEISP Number of specific fragments extracted= 6 number of extra gaps= 0 total=101 Number of alignments=26 # 1og6A read from 1og6A/merged-good-all-a2m # found chain 1og6A in template set T0300 9 :TYEEMVKEVERLKLENK 1og6A 102 :DRDHIIKSAEQSLINLA T0300 37 :VS 1og6A 119 :TD T0300 39 :SDDSILTAAK 1og6A 129 :RPDPLMDADE T0300 53 :IVSSSRALGA 1og6A 139 :VADAFKHLHQ T0300 81 :TEQELTSLLQSLT 1og6A 161 :TPAQFALLQSRLP T0300 94 :LRVDVSM 1og6A 179 :NQVEISP Number of specific fragments extracted= 6 number of extra gaps= 0 total=107 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sauA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0300 read from 1sauA/merged-good-all-a2m # 1sauA read from 1sauA/merged-good-all-a2m # found chain 1sauA in training set Warning: unaligning (T0300)S42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1sauA)E45 Warning: unaligning (T0300)I43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1sauA)E45 T0300 25 :KTLKQKVKSSGAVSSDD 1sauA 27 :EEVAEALAKDTRFSPQP T0300 44 :LTA 1sauA 46 :LTE T0300 48 :KRESIIVSSSRALGAV 1sauA 49 :EHWKIIRYLRDYFIKY T0300 65 :MRKIEAKVRSRAAKAVTEQELTSLLQS 1sauA 70 :VRMLVKHCKKEVRPDCNLQYIYKLFPQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=111 Number of alignments=28 # 1sauA read from 1sauA/merged-good-all-a2m # found chain 1sauA in training set Warning: unaligning (T0300)S42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1sauA)E45 Warning: unaligning (T0300)I43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1sauA)E45 T0300 25 :KTLKQKVKSSGAVSSDD 1sauA 27 :EEVAEALAKDTRFSPQP T0300 44 :LTA 1sauA 46 :LTE T0300 48 :KRESIIVSSSRALGAV 1sauA 49 :EHWKIIRYLRDYFIKY T0300 65 :MRKIEAKVRSRAAKAVTEQELTSLLQS 1sauA 70 :VRMLVKHCKKEVRPDCNLQYIYKLFPQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=115 Number of alignments=29 # 1sauA read from 1sauA/merged-good-all-a2m # found chain 1sauA in training set Warning: unaligning (T0300)S42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1sauA)E45 Warning: unaligning (T0300)I43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1sauA)E45 T0300 25 :KTLKQKVKSSGAVSSDD 1sauA 27 :EEVAEALAKDTRFSPQP T0300 44 :LTAA 1sauA 46 :LTEE T0300 49 :RESIIVSSSRALGAV 1sauA 50 :HWKIIRYLRDYFIKY T0300 65 :MRKIEAKVRSRAAKAVTEQELTSLLQS 1sauA 70 :VRMLVKHCKKEVRPDCNLQYIYKLFPQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=119 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a6cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2a6cA expands to /projects/compbio/data/pdb/2a6c.pdb.gz 2a6cA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 2a6cA Skipped atom 104, because occupancy 0.500 <= existing 0.500 in 2a6cA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0300 read from 2a6cA/merged-good-all-a2m # 2a6cA read from 2a6cA/merged-good-all-a2m # adding 2a6cA to template set # found chain 2a6cA in template set Warning: unaligning (T0300)S3 because first residue in template chain is (2a6cA)I-6 T0300 4 :KKPDKTYEEM 2a6cA -5 :HHHHHHMKMR T0300 18 :ERLKL 2a6cA 5 :SQLLI T0300 26 :TLKQKVKSSG 2a6cA 10 :VLQEHLRNSG T0300 44 :LTAAKRESII 2a6cA 20 :LTQFKAAELL T0300 54 :VSSS 2a6cA 33 :QPRV T0300 70 :AKVRSRAAKAVTEQELTSLLQSLTLRV 2a6cA 37 :SDLMRGKIDLFSLESLIDMITSIGLKV Number of specific fragments extracted= 6 number of extra gaps= 0 total=125 Number of alignments=31 # 2a6cA read from 2a6cA/merged-good-all-a2m # found chain 2a6cA in template set Warning: unaligning (T0300)S3 because first residue in template chain is (2a6cA)I-6 T0300 4 :KKPDKTYEEM 2a6cA -5 :HHHHHHMKMR T0300 18 :ERLK 2a6cA 5 :SQLL T0300 25 :KTLKQKVKSSG 2a6cA 9 :IVLQEHLRNSG T0300 44 :LTAAKRESII 2a6cA 20 :LTQFKAAELL T0300 54 :VSSS 2a6cA 33 :QPRV T0300 70 :AKVRSRAAKAVTEQELTSLLQSLTLRVD 2a6cA 37 :SDLMRGKIDLFSLESLIDMITSIGLKVE Number of specific fragments extracted= 6 number of extra gaps= 0 total=131 Number of alignments=32 # 2a6cA read from 2a6cA/merged-good-all-a2m # found chain 2a6cA in template set Warning: unaligning (T0300)S3 because first residue in template chain is (2a6cA)I-6 T0300 4 :KKPDKTYEEMVKE 2a6cA -5 :HHHHHHMKMRSQL T0300 24 :NKTLKQKVKSSG 2a6cA 8 :LIVLQEHLRNSG T0300 44 :LTAAKRESII 2a6cA 20 :LTQFKAAELL T0300 54 :VSSS 2a6cA 33 :QPRV T0300 70 :AKVRSRAAKAVTEQELTSLLQSLTLRVDVSMEE 2a6cA 37 :SDLMRGKIDLFSLESLIDMITSIGLKVEINIKD Number of specific fragments extracted= 5 number of extra gaps= 0 total=136 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jkw/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jkw expands to /projects/compbio/data/pdb/1jkw.pdb.gz 1jkw:Warning: there is no chain 1jkw will retry with 1jkwA # T0300 read from 1jkw/merged-good-all-a2m # 1jkw read from 1jkw/merged-good-all-a2m # adding 1jkw to template set # found chain 1jkw in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1jkw)W11 T0300 6 :PDKTYEEMVKEVER 1jkw 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSI 1jkw 26 :ANRKFRCKAVANGKVLPNDPV T0300 44 :LTAAKRESIIVSSSRALGAVAMR 1jkw 48 :LEPHEEMTLCKYYEKRLLEFCSV Number of specific fragments extracted= 3 number of extra gaps= 0 total=139 Number of alignments=34 # 1jkw read from 1jkw/merged-good-all-a2m # found chain 1jkw in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1jkw)W11 T0300 6 :PDKTYEEMVKEVER 1jkw 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSI 1jkw 26 :ANRKFRCKAVANGKVLPNDPV T0300 44 :LTAAKRESIIVSSSRALGAVAMR 1jkw 48 :LEPHEEMTLCKYYEKRLLEFCSV Number of specific fragments extracted= 3 number of extra gaps= 0 total=142 Number of alignments=35 # 1jkw read from 1jkw/merged-good-all-a2m # found chain 1jkw in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1jkw)W11 T0300 6 :PDKTYEEMVKEVER 1jkw 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSILTAAKRESII 1jkw 26 :ANRKFRCKAVANGKVLPNDPVFLEPHEEMTL T0300 54 :VSSSRALGAVAMR 1jkw 58 :KYYEKRLLEFCSV Number of specific fragments extracted= 3 number of extra gaps= 0 total=145 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q8kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300/1q8kA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0300/1q8kA/merged-good-all-a2m.gz for input Trying 1q8kA/merged-good-all-a2m Error: Couldn't open file 1q8kA/merged-good-all-a2m or 1q8kA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u2uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300/1u2uA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0300/1u2uA/merged-good-all-a2m.gz for input Trying 1u2uA/merged-good-all-a2m Error: Couldn't open file 1u2uA/merged-good-all-a2m or 1u2uA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p9iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0300 read from 1p9iA/merged-good-all-a2m # 1p9iA read from 1p9iA/merged-good-all-a2m # found chain 1p9iA in training set T0300 59 :ALGAVAMRKIEAKVRSRAAKA 1p9iA 9 :ASLEAENKQLKAKVEELLAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=146 Number of alignments=37 # 1p9iA read from 1p9iA/merged-good-all-a2m # found chain 1p9iA in training set T0300 59 :ALGAVAMRKIEAKVRSRAAKA 1p9iA 9 :ASLEAENKQLKAKVEELLAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=147 Number of alignments=38 # 1p9iA read from 1p9iA/merged-good-all-a2m # found chain 1p9iA in training set T0300 18 :ERLKLENKTLKQKVKS 1p9iA 9 :ASLEAENKQLKAKVEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=148 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1debA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1debA expands to /projects/compbio/data/pdb/1deb.pdb.gz 1debA:# T0300 read from 1debA/merged-good-all-a2m # 1debA read from 1debA/merged-good-all-a2m # adding 1debA to template set # found chain 1debA in template set Warning: unaligning (T0300)P6 because first residue in template chain is (1debA)A2 T0300 7 :DKTYEEMVKEVERLKLENKTLKQKVKS 1debA 3 :AASYDQLLKQVEALKMENSNLRQELED T0300 56 :SSRALGAVAMRKIEAKVRSRA 1debA 30 :NSNHLTKLETEASNMKEVLKQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=150 Number of alignments=39 # 1debA read from 1debA/merged-good-all-a2m # found chain 1debA in template set Warning: unaligning (T0300)P6 because first residue in template chain is (1debA)A2 T0300 7 :DKTYEEMVKEVERLKLENKTLKQKVKS 1debA 3 :AASYDQLLKQVEALKMENSNLRQELED T0300 56 :SSRALGAVAMRKIEAK 1debA 30 :NSNHLTKLETEASNMK T0300 72 :VRSRA 1debA 47 :VLKQL Number of specific fragments extracted= 3 number of extra gaps= 0 total=153 Number of alignments=40 # 1debA read from 1debA/merged-good-all-a2m # found chain 1debA in template set Warning: unaligning (T0300)P6 because first residue in template chain is (1debA)A2 T0300 7 :DKTYEEMVKEVERLKLENKTLKQKVKSS 1debA 3 :AASYDQLLKQVEALKMENSNLRQELEDN T0300 57 :SRALGAVAMRKIEAKV 1debA 31 :SNHLTKLETEASNMKE Number of specific fragments extracted= 2 number of extra gaps= 0 total=155 Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oqcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0300 read from 1oqcA/merged-good-all-a2m # 1oqcA read from 1oqcA/merged-good-all-a2m # found chain 1oqcA in training set Warning: unaligning (T0300)K4 because first residue in template chain is (1oqcA)E13 T0300 5 :KPDKTYEEMVKE 1oqcA 14 :DCPQDREELGRN T0300 23 :ENKTLKQKVKSS 1oqcA 26 :TWAFLHTLAAYY T0300 41 :DSILTAAKRE 1oqcA 38 :PDMPTPEQQQ T0300 52 :IIVSSSRALGA 1oqcA 48 :DMAQFIHIFSK T0300 63 :VAMRKIEAKVRSRAAKAVTEQELTSLL 1oqcA 64 :ECAEDIRKRIDRSQPDTSTRVSFSQWL Number of specific fragments extracted= 5 number of extra gaps= 0 total=160 Number of alignments=42 # 1oqcA read from 1oqcA/merged-good-all-a2m # found chain 1oqcA in training set Warning: unaligning (T0300)K4 because first residue in template chain is (1oqcA)E13 T0300 5 :KPDKTYEEMVKE 1oqcA 14 :DCPQDREELGRN T0300 23 :ENKTLKQKVKSS 1oqcA 26 :TWAFLHTLAAYY T0300 41 :DSILTAAKRE 1oqcA 38 :PDMPTPEQQQ T0300 52 :IIVSSSRALGA 1oqcA 48 :DMAQFIHIFSK T0300 63 :VAMRKIEAKVRSRAAKAVTEQELTSLL 1oqcA 64 :ECAEDIRKRIDRSQPDTSTRVSFSQWL Number of specific fragments extracted= 5 number of extra gaps= 0 total=165 Number of alignments=43 # 1oqcA read from 1oqcA/merged-good-all-a2m # found chain 1oqcA in training set Warning: unaligning (T0300)K4 because first residue in template chain is (1oqcA)E13 T0300 5 :KPDKTYEEMVKE 1oqcA 14 :DCPQDREELGRN T0300 23 :ENKTLKQKVKS 1oqcA 26 :TWAFLHTLAAY T0300 37 :VSSDD 1oqcA 37 :YPDMP T0300 46 :AAKRESIIVSSSRALGA 1oqcA 42 :TPEQQQDMAQFIHIFSK T0300 63 :VAMRKIEAKVRSRAAKAVTEQELTSLLQS 1oqcA 64 :ECAEDIRKRIDRSQPDTSTRVSFSQWLCR Number of specific fragments extracted= 5 number of extra gaps= 0 total=170 Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kxu/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kxu expands to /projects/compbio/data/pdb/1kxu.pdb.gz 1kxu:Warning: there is no chain 1kxu will retry with 1kxuA # T0300 read from 1kxu/merged-good-all-a2m # 1kxu read from 1kxu/merged-good-all-a2m # adding 1kxu to template set # found chain 1kxu in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1kxu)W11 T0300 6 :PDKTYEEMVKEVER 1kxu 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSI 1kxu 26 :ANRKFRCKAVANGKVLPNDPV T0300 44 :LTAAKRESIIVSSSRALGAVAM 1kxu 48 :LEPHEEMTLCKYYEKRLLEFCS Number of specific fragments extracted= 3 number of extra gaps= 0 total=173 Number of alignments=45 # 1kxu read from 1kxu/merged-good-all-a2m # found chain 1kxu in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1kxu)W11 T0300 6 :PDKTYEEMVKEVER 1kxu 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSI 1kxu 26 :ANRKFRCKAVANGKVLPNDPV T0300 44 :LTAAKRESIIVSSSRALGAVAM 1kxu 48 :LEPHEEMTLCKYYEKRLLEFCS Number of specific fragments extracted= 3 number of extra gaps= 0 total=176 Number of alignments=46 # 1kxu read from 1kxu/merged-good-all-a2m # found chain 1kxu in template set Warning: unaligning (T0300)K5 because first residue in template chain is (1kxu)W11 T0300 6 :PDKTYEEMVKEVER 1kxu 12 :TFSSEEQLARLRAD T0300 23 :ENKTLKQKVKSSGAVSSDDSILTAAKRESII 1kxu 26 :ANRKFRCKAVANGKVLPNDPVFLEPHEEMTL T0300 54 :VSSSRALGAVAM 1kxu 58 :KYYEKRLLEFCS Number of specific fragments extracted= 3 number of extra gaps= 0 total=179 Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lg2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lg2A expands to /projects/compbio/data/pdb/1lg2.pdb.gz 1lg2A:# T0300 read from 1lg2A/merged-good-all-a2m # 1lg2A read from 1lg2A/merged-good-all-a2m # adding 1lg2A to template set # found chain 1lg2A in template set Warning: unaligning (T0300)V37 because of BadResidue code BAD_PEPTIDE in next template residue (1lg2A)Y141 Warning: unaligning (T0300)S38 because of BadResidue code BAD_PEPTIDE at template residue (1lg2A)Y141 T0300 10 :YEEMVKEV 1lg2A 116 :RQTFVNSA T0300 28 :KQKVKSSGA 1lg2A 124 :IRFLRKYSF T0300 39 :SDDSILTAAKRE 1lg2A 142 :PGSQGSPAVDKE T0300 52 :IIVSSSRALGAVAMRKIEAK 1lg2A 154 :RFTTLVQDLANAFQQEAQTS T0300 91 :SLTLRVDVSM 1lg2A 177 :RLLLSAAVPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=184 Number of alignments=48 # 1lg2A read from 1lg2A/merged-good-all-a2m # found chain 1lg2A in template set T0300 10 :YEEMVKEV 1lg2A 116 :RQTFVNSA T0300 28 :KQKVKSSGA 1lg2A 124 :IRFLRKYSF T0300 39 :SDDSILTAAKRE 1lg2A 142 :PGSQGSPAVDKE T0300 52 :IIVSSSRALGAVAMRKIEAK 1lg2A 154 :RFTTLVQDLANAFQQEAQTS T0300 91 :SLTLRVDVSM 1lg2A 177 :RLLLSAAVPA Number of specific fragments extracted= 5 number of extra gaps= 0 total=189 Number of alignments=49 # 1lg2A read from 1lg2A/merged-good-all-a2m # found chain 1lg2A in template set T0300 17 :VERLKLENKTL 1lg2A 116 :RQTFVNSAIRF T0300 31 :VKS 1lg2A 127 :LRK T0300 41 :DSILTAAKRESIIVSSSRALGAVAMRKIEAK 1lg2A 143 :GSQGSPAVDKERFTTLVQDLANAFQQEAQTS T0300 81 :TEQE 1lg2A 187 :GQTY T0300 85 :LTSLLQSLTLRVDV 1lg2A 197 :VDKIAQNLDFVNLM Number of specific fragments extracted= 5 number of extra gaps= 0 total=194 Number of alignments=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2adoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2adoA expands to /projects/compbio/data/pdb/2ado.pdb.gz 2adoA:# T0300 read from 2adoA/merged-good-all-a2m # 2adoA read from 2adoA/merged-good-all-a2m # adding 2adoA to template set # found chain 2adoA in template set T0300 26 :TLKQKVKSSGAV 2adoA 1951 :DWLHQSRKAGFF T0300 38 :SSDDSILTAAKRESIIVSSSRALGAVAMR 2adoA 1964 :PPDEYVVTDPEQEKNFGFSLQDALSRARE T0300 88 :LLQSLTLRV 2adoA 1995 :LLEGYEIYV T0300 99 :S 2adoA 2004 :T Number of specific fragments extracted= 4 number of extra gaps= 0 total=198 Number of alignments=51 # 2adoA read from 2adoA/merged-good-all-a2m # found chain 2adoA in template set T0300 26 :TLKQKVKSSGAV 2adoA 1951 :DWLHQSRKAGFF T0300 38 :SSDDSILTAAKRESIIVSSSRALGAVAMR 2adoA 1964 :PPDEYVVTDPEQEKNFGFSLQDALSRARE T0300 88 :LLQSLTLRV 2adoA 1995 :LLEGYEIYV T0300 99 :S 2adoA 2004 :T Number of specific fragments extracted= 4 number of extra gaps= 0 total=202 Number of alignments=52 # 2adoA read from 2adoA/merged-good-all-a2m # found chain 2adoA in template set T0300 26 :TLKQKVKSSGAV 2adoA 1951 :DWLHQSRKAGFF T0300 38 :SSDDSILTAAKRESIIVSSSRALGAVAMR 2adoA 1964 :PPDEYVVTDPEQEKNFGFSLQDALSRARE T0300 88 :LLQSL 2adoA 1995 :LLEGY T0300 95 :RVDVSM 2adoA 2000 :EIYVTP Number of specific fragments extracted= 4 number of extra gaps= 0 total=206 Number of alignments=53 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cq3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cq3A expands to /projects/compbio/data/pdb/1cq3.pdb.gz 1cq3A:# T0300 read from 1cq3A/merged-good-all-a2m # 1cq3A read from 1cq3A/merged-good-all-a2m # adding 1cq3A to template set # found chain 1cq3A in template set T0300 78 :KAVTEQELTSLLQSLTLRVDVSM 1cq3A 110 :PAITREEALSMIKDCEMSINIKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=207 Number of alignments=54 # 1cq3A read from 1cq3A/merged-good-all-a2m # found chain 1cq3A in template set T0300 78 :KAVTEQELTSLLQSLTLRVDVSM 1cq3A 110 :PAITREEALSMIKDCEMSINIKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=208 Number of alignments=55 # 1cq3A read from 1cq3A/merged-good-all-a2m # found chain 1cq3A in template set T0300 78 :KAVTEQELTSLLQSLTLRVDVSM 1cq3A 110 :PAITREEALSMIKDCEMSINIKC Number of specific fragments extracted= 1 number of extra gaps= 0 total=209 Number of alignments=56 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sesA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sesA expands to /projects/compbio/data/pdb/1ses.pdb.gz 1sesA:# T0300 read from 1sesA/merged-good-all-a2m # 1sesA read from 1sesA/merged-good-all-a2m # adding 1sesA to template set # found chain 1sesA in template set Warning: unaligning (T0300)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P59 Warning: unaligning (T0300)S42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P59 Warning: unaligning (T0300)T45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P63 Warning: unaligning (T0300)A46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P63 T0300 7 :DKTYEEMVKEVERLKLENKTL 1sesA 24 :ALDLEALLALDREVQELKKRL T0300 28 :KQKVKS 1sesA 51 :RNQVAK T0300 43 :IL 1sesA 60 :KA T0300 47 :AKRESIIVSS 1sesA 64 :EEKEALIARG T0300 58 :RAL 1sesA 74 :KAL T0300 62 :AVAMRKIEAKVRSR 1sesA 77 :GEEAKRLEEALREK T0300 82 :EQELTSLLQSL 1sesA 91 :EARLEALLLQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=216 Number of alignments=57 # 1sesA read from 1sesA/merged-good-all-a2m # found chain 1sesA in template set Warning: unaligning (T0300)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P59 Warning: unaligning (T0300)S42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P59 Warning: unaligning (T0300)T45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P63 Warning: unaligning (T0300)A46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P63 T0300 8 :KTYEEMVKEVERLKLENKTL 1sesA 25 :LDLEALLALDREVQELKKRL T0300 28 :KQKVKS 1sesA 51 :RNQVAK T0300 43 :IL 1sesA 60 :KA T0300 47 :AKRESIIVSS 1sesA 64 :EEKEALIARG T0300 58 :RAL 1sesA 74 :KAL T0300 62 :AVAMRKIEAKVRSR 1sesA 77 :GEEAKRLEEALREK T0300 82 :EQELTSLLQSL 1sesA 91 :EARLEALLLQV Number of specific fragments extracted= 7 number of extra gaps= 2 total=223 Number of alignments=58 # 1sesA read from 1sesA/merged-good-all-a2m # found chain 1sesA in template set Warning: unaligning (T0300)V37 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P59 Warning: unaligning (T0300)S38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P59 Warning: unaligning (T0300)T45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1sesA)P63 Warning: unaligning (T0300)A46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sesA)P63 T0300 7 :DKTYEEMVKEVERLKLENKTLKQKVKS 1sesA 24 :ALDLEALLALDREVQELKKRLQEVQTE T0300 34 :S 1sesA 57 :R T0300 39 :S 1sesA 60 :K T0300 44 :L 1sesA 61 :A T0300 47 :AKRESIIVS 1sesA 64 :EEKEALIAR T0300 57 :SRALGAV 1sesA 73 :GKALGEE T0300 65 :MRKIEAKVRSR 1sesA 80 :AKRLEEALREK T0300 82 :EQELTSLLQSLT 1sesA 91 :EARLEALLLQVP Number of specific fragments extracted= 8 number of extra gaps= 2 total=231 Number of alignments=59 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l8dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l8dA expands to /projects/compbio/data/pdb/1l8d.pdb.gz 1l8dA:# T0300 read from 1l8dA/merged-good-all-a2m # 1l8dA read from 1l8dA/merged-good-all-a2m # adding 1l8dA to template set # found chain 1l8dA in template set Warning: unaligning (T0300)L92 because last residue in template chain is (1l8dA)L498 T0300 10 :YEEMVKEVERLKLENKTLKQKVKS 1l8dA 413 :RNEITQRIGELKNKIGDLKTAIEE T0300 34 :S 1l8dA 440 :A T0300 35 :GAVSSDDSILTAAKRESIIVSSSRALGAV 1l8dA 442 :GKCPVCGRELTDEHREELLSKYHLDLNNS T0300 65 :MRKIEAKVRSRAAKAVTEQELTSLLQS 1l8dA 471 :KNTLAKLIDRKSELERELRRIDMEIKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=235 Number of alignments=60 # 1l8dA read from 1l8dA/merged-good-all-a2m # found chain 1l8dA in template set Warning: unaligning (T0300)L92 because last residue in template chain is (1l8dA)L498 T0300 10 :YEEMVKEVERLKLENKTLKQKVKS 1l8dA 413 :RNEITQRIGELKNKIGDLKTAIEE T0300 34 :S 1l8dA 440 :A T0300 35 :GAVSSDDSILTAAKRESIIVSSSRALGAV 1l8dA 442 :GKCPVCGRELTDEHREELLSKYHLDLNNS T0300 65 :MRKIEAKVRSRAAKAVTEQELTSLLQS 1l8dA 471 :KNTLAKLIDRKSELERELRRIDMEIKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=239 Number of alignments=61 # 1l8dA read from 1l8dA/merged-good-all-a2m # found chain 1l8dA in template set T0300 10 :YEEMVKEVERLKLENKTLKQKVKSSGAVS 1l8dA 413 :RNEITQRIGELKNKIGDLKTAIEELKKAK T0300 39 :SDDSILTAAKRESIIVSSSRALGAV 1l8dA 446 :VCGRELTDEHREELLSKYHLDLNNS T0300 65 :MRKIEAKVRS 1l8dA 471 :KNTLAKLIDR T0300 76 :AAKA 1l8dA 481 :KSEL T0300 82 :EQELTSL 1l8dA 485 :ERELRRI Number of specific fragments extracted= 5 number of extra gaps= 0 total=244 Number of alignments=62 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ad1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ad1A expands to /projects/compbio/data/pdb/1ad1.pdb.gz 1ad1A:# T0300 read from 1ad1A/merged-good-all-a2m # 1ad1A read from 1ad1A/merged-good-all-a2m # adding 1ad1A to template set # found chain 1ad1A in template set T0300 2 :ASKKPDKTYEEMVKEVERLKLE 1ad1A 18 :SDGGKFNNVESAVTRVKAMMDE T0300 34 :SGAVSSDDSILTAAKRESIIVSSSRAL 1ad1A 48 :GVSTRPGHEMITVEEELNRVLPVVEAI T0300 79 :AVTEQELTSLLQ 1ad1A 85 :TFRSEVAEACLK T0300 91 :SLTLRVD 1ad1A 98 :GVDIIND Number of specific fragments extracted= 4 number of extra gaps= 0 total=248 Number of alignments=63 # 1ad1A read from 1ad1A/merged-good-all-a2m # found chain 1ad1A in template set T0300 2 :ASKKPDKTYEEMVKEVERLKLE 1ad1A 18 :SDGGKFNNVESAVTRVKAMMDE T0300 34 :SGAVSSDDSILTAAKRESIIVSSSRAL 1ad1A 48 :GVSTRPGHEMITVEEELNRVLPVVEAI T0300 79 :AVTEQELTSLLQ 1ad1A 85 :TFRSEVAEACLK T0300 91 :SLTLRVD 1ad1A 98 :GVDIIND Number of specific fragments extracted= 4 number of extra gaps= 0 total=252 Number of alignments=64 # 1ad1A read from 1ad1A/merged-good-all-a2m # found chain 1ad1A in template set T0300 1 :MASKKPDKTYEEMVKEVERLKLE 1ad1A 17 :FSDGGKFNNVESAVTRVKAMMDE T0300 34 :SGAVSSDDSILTAAKRESIIVSSSRAL 1ad1A 48 :GVSTRPGHEMITVEEELNRVLPVVEAI T0300 79 :AVTEQELTSLLQ 1ad1A 85 :TFRSEVAEACLK T0300 91 :SLTLRV 1ad1A 98 :GVDIIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=256 Number of alignments=65 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pb6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pb6A expands to /projects/compbio/data/pdb/1pb6.pdb.gz 1pb6A:# T0300 read from 1pb6A/merged-good-all-a2m # 1pb6A read from 1pb6A/merged-good-all-a2m # adding 1pb6A to template set # found chain 1pb6A in template set T0300 17 :VERLKLENKTLKQKVKSSGAVSS 1pb6A 133 :LKALIDEKSALIAGWVKSGKLAP T0300 44 :LTAAKRESIIVSSSRALG 1pb6A 156 :IDPQHLIFMIWASTQHYA T0300 62 :AVAMRKIEAKVRSRA 1pb6A 190 :EVFFNQTVENVQRII Number of specific fragments extracted= 3 number of extra gaps= 0 total=259 Number of alignments=66 # 1pb6A read from 1pb6A/merged-good-all-a2m # found chain 1pb6A in template set T0300 17 :VERLKLENKTLKQKVKSSGAVSS 1pb6A 133 :LKALIDEKSALIAGWVKSGKLAP T0300 44 :LTAAKRESIIVSSSRALG 1pb6A 156 :IDPQHLIFMIWASTQHYA T0300 62 :AVAMRKIEAKVRSRA 1pb6A 190 :EVFFNQTVENVQRII Number of specific fragments extracted= 3 number of extra gaps= 0 total=262 Number of alignments=67 # 1pb6A read from 1pb6A/merged-good-all-a2m # found chain 1pb6A in template set T0300 17 :VERLKLENKTLKQKVKSSGAVSS 1pb6A 133 :LKALIDEKSALIAGWVKSGKLAP T0300 44 :LTAAKRESIIVSSSRALG 1pb6A 156 :IDPQHLIFMIWASTQHYA T0300 62 :AVAMRKIEAKVRS 1pb6A 194 :NQTVENVQRIIIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=265 Number of alignments=68 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nh1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nh1A expands to /projects/compbio/data/pdb/1nh1.pdb.gz 1nh1A:# T0300 read from 1nh1A/merged-good-all-a2m # 1nh1A read from 1nh1A/merged-good-all-a2m # adding 1nh1A to template set # found chain 1nh1A in template set T0300 9 :TYEEMVKEVERLKLEN 1nh1A 183 :DTEYLRDRVAHLRTEL T0300 25 :KTLKQKVKSSGAV 1nh1A 201 :KALKQHLQRYNPD T0300 38 :SSDDSIL 1nh1A 217 :HTNASYL T0300 51 :SIIVSSSRALGAVA 1nh1A 224 :PIIKDHLNDLYRQA T0300 76 :AAKAVTEQELTSLL 1nh1A 238 :ISSDLSQAELISLI Number of specific fragments extracted= 5 number of extra gaps= 0 total=270 Number of alignments=69 # 1nh1A read from 1nh1A/merged-good-all-a2m # found chain 1nh1A in template set T0300 9 :TYEEMVKEVERLKLEN 1nh1A 183 :DTEYLRDRVAHLRTEL T0300 25 :KTLKQKVKSSGAV 1nh1A 201 :KALKQHLQRYNPD T0300 38 :SSDDSIL 1nh1A 217 :HTNASYL T0300 51 :SIIVSSSRALGAVA 1nh1A 224 :PIIKDHLNDLYRQA T0300 76 :AAKAVTEQELTSLL 1nh1A 238 :ISSDLSQAELISLI Number of specific fragments extracted= 5 number of extra gaps= 0 total=275 Number of alignments=70 # 1nh1A read from 1nh1A/merged-good-all-a2m # found chain 1nh1A in template set T0300 9 :TYEEMVKEVERLKLEN 1nh1A 183 :DTEYLRDRVAHLRTEL T0300 25 :KTLKQKVKSSGAV 1nh1A 201 :KALKQHLQRYNPD T0300 39 :SDDSIL 1nh1A 218 :TNASYL T0300 51 :SIIVSSSRALGAVA 1nh1A 224 :PIIKDHLNDLYRQA T0300 76 :AAKAVTEQELTSLLQ 1nh1A 238 :ISSDLSQAELISLIA Number of specific fragments extracted= 5 number of extra gaps= 0 total=280 Number of alignments=71 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0300//projects/compbio/experiments/protein-predict/casp7/T0300/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0300//projects/compbio/experiments/protein-predict/casp7/T0300/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0300/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0300/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0300)V17.CB, (T0300)L60.CB) [> 3.4292 = 5.7153 < 7.4298] w=1.0000 to align # Constraint # added constraint: constraint((T0300)L44.CB, (T0300)I53.CB) [> 3.8918 = 6.4864 < 8.4323] w=0.8407 to align # Constraint # added constraint: constraint((T0300)I53.CB, (T0300)L88.CB) [> 3.7819 = 6.3031 < 8.1940] w=0.6483 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)S56.CB) [> 3.4218 = 5.7030 < 7.4139] w=0.6444 to align # Constraint # added constraint: constraint((T0300)S34.CB, (T0300)L44.CB) [> 3.5043 = 5.8406 < 7.5928] w=0.6196 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)S57.CB) [> 3.9125 = 6.5209 < 8.4772] w=0.6146 to align # Constraint # added constraint: constraint((T0300)Y10.CB, (T0300)S55.CB) [> 3.3816 = 5.6360 < 7.3268] w=0.5872 to align # Constraint # added constraint: constraint((T0300)Y10.CB, (T0300)S56.CB) [> 2.9580 = 4.9300 < 6.4090] w=0.5872 to align # Constraint # added constraint: constraint((T0300)Y10.CB, (T0300)A59.CB) [> 3.5831 = 5.9717 < 7.7633] w=0.5872 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)S56.CB) [> 3.2457 = 5.4095 < 7.0324] w=0.5872 to align # Constraint # added constraint: constraint((T0300)V14.CB, (T0300)L60.CB) [> 3.6590 = 6.0984 < 7.9279] w=0.5872 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)L60.CB) [> 4.4009 = 7.3348 < 9.5352] w=0.5571 to align # Constraint # added constraint: constraint((T0300)K30.CB, (T0300)S56.CB) [> 3.6936 = 6.1559 < 8.0027] w=0.5458 to align # Constraint # added constraint: constraint((T0300)L27.CB, (T0300)L60.CB) [> 3.6141 = 6.0235 < 7.8306] w=0.5318 to align # Constraint # added constraint: constraint((T0300)S34.CB, (T0300)R49.CB) [> 3.4049 = 5.6749 < 7.3773] w=0.5273 to align # Constraint # added constraint: constraint((T0300)S57.CB, (T0300)L92.CB) [> 3.7933 = 6.3221 < 8.2188] w=0.4983 to align # Constraint # added constraint: constraint((T0300)V54.CB, (T0300)L88.CB) [> 4.0618 = 6.7697 < 8.8006] w=0.4983 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)A46.CB) [> 3.9724 = 6.6206 < 8.6068] w=0.4846 to align # Constraint # added constraint: constraint((T0300)L27.CB, (T0300)V72.CB) [> 4.1893 = 6.9822 < 9.0768] w=0.4822 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)E50.CB) [> 4.0175 = 6.6958 < 8.7045] w=0.4663 to align # Constraint # added constraint: constraint((T0300)K28.CB, (T0300)L44.CB) [> 4.2191 = 7.0318 < 9.1413] w=0.4645 to align # Constraint # added constraint: constraint((T0300)L20.CB, (T0300)V63.CB) [> 3.6801 = 6.1335 < 7.9736] w=0.4633 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)L85.CB) [> 3.8173 = 6.3622 < 8.2708] w=0.4456 to align # Constraint # added constraint: constraint((T0300)S57.CB, (T0300)V96.CB) [> 3.2430 = 5.4050 < 7.0265] w=0.4429 to align # Constraint # added constraint: constraint((T0300)L60.CB, (T0300)L94.CB) [> 3.7368 = 6.2280 < 8.0964] w=0.4429 to align # Constraint # added constraint: constraint((T0300)G61.CA, (T0300)L94.CB) [> 3.6779 = 6.1298 < 7.9687] w=0.4429 to align # Constraint # added constraint: constraint((T0300)A64.CB, (T0300)L92.CB) [> 3.2273 = 5.3788 < 6.9925] w=0.4429 to align # Constraint # added constraint: constraint((T0300)A64.CB, (T0300)T93.CB) [> 4.3765 = 7.2942 < 9.4825] w=0.4429 to align # Constraint # added constraint: constraint((T0300)A64.CB, (T0300)L94.CB) [> 3.3956 = 5.6594 < 7.3572] w=0.4429 to align # Constraint # added constraint: constraint((T0300)K67.CB, (T0300)L92.CB) [> 3.9189 = 6.5316 < 8.4910] w=0.4429 to align # Constraint # added constraint: constraint((T0300)I68.CB, (T0300)L92.CB) [> 3.8580 = 6.4300 < 8.3590] w=0.4429 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)L92.CB) [> 4.1383 = 6.8972 < 8.9663] w=0.4131 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)I53.CB) [> 4.3712 = 7.2853 < 9.4710] w=0.4128 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)L44.CB) [> 4.2114 = 7.0190 < 9.1247] w=0.4030 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)I53.CB) [> 3.5888 = 5.9813 < 7.7758] w=0.4003 to align # Constraint # added constraint: constraint((T0300)K28.CB, (T0300)E50.CB) [> 4.3775 = 7.2958 < 9.4846] w=0.3833 to align # Constraint # added constraint: constraint((T0300)I53.CB, (T0300)V72.CB) [> 4.2354 = 7.0589 < 9.1766] w=0.3688 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)I53.CB) [> 3.5217 = 5.8696 < 7.6304] w=0.3682 to align # Constraint # added constraint: constraint((T0300)S34.CB, (T0300)I53.CB) [> 3.2863 = 5.4771 < 7.1203] w=0.3543 to align # Constraint # added constraint: constraint((T0300)V14.CB, (T0300)K28.CB) [> 3.7859 = 6.3098 < 8.2027] w=0.3477 to align # Constraint # added constraint: constraint((T0300)L20.CB, (T0300)K71.CB) [> 4.2965 = 7.1609 < 9.3091] w=0.3459 to align # Constraint # added constraint: constraint((T0300)R49.CB, (T0300)E84.CB) [> 3.1969 = 5.3281 < 6.9266] w=0.3439 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)V72.CB) [> 4.0732 = 6.7887 < 8.8253] w=0.3342 to align # Constraint # added constraint: constraint((T0300)A64.CB, (T0300)L88.CB) [> 3.1052 = 5.1753 < 6.7279] w=0.3305 to align # Constraint # added constraint: constraint((T0300)L27.CB, (T0300)L89.CB) [> 3.5589 = 5.9314 < 7.7109] w=0.3136 to align # Constraint # added constraint: constraint((T0300)A76.CB, (T0300)L89.CB) [> 3.5250 = 5.8749 < 7.6374] w=0.3074 to align # Constraint # added constraint: constraint((T0300)I53.CB, (T0300)A76.CB) [> 4.2365 = 7.0608 < 9.1791] w=0.3048 to align # Constraint # added constraint: constraint((T0300)I52.CB, (T0300)A76.CB) [> 3.9379 = 6.5632 < 8.5322] w=0.3029 to align # Constraint # added constraint: constraint((T0300)S55.CB, (T0300)K71.CB) [> 3.4044 = 5.6741 < 7.3763] w=0.2958 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)L88.CB) [> 3.6346 = 6.0577 < 7.8750] w=0.2956 to align # Constraint # added constraint: constraint((T0300)E23.CB, (T0300)K71.CB) [> 3.4920 = 5.8200 < 7.5661] w=0.2956 to align # Constraint # added constraint: constraint((T0300)K32.CB, (T0300)S56.CB) [> 4.1817 = 6.9696 < 9.0604] w=0.2762 to align # Constraint # added constraint: constraint((T0300)D41.CB, (T0300)I52.CB) [> 4.0779 = 6.7965 < 8.8354] w=0.2726 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)I52.CB) [> 2.9368 = 4.8947 < 6.3631] w=0.2652 to align # Constraint # added constraint: constraint((T0300)E23.CB, (T0300)A59.CB) [> 4.6255 = 7.7091 < 10.0219] w=0.2652 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)K67.CB) [> 3.1425 = 5.2375 < 6.8088] w=0.2652 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)A64.CB) [> 4.0022 = 6.6704 < 8.6715] w=0.2652 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)V63.CB) [> 4.1095 = 6.8492 < 8.9040] w=0.2652 to align # Constraint # added constraint: constraint((T0300)E12.CB, (T0300)K67.CB) [> 3.5236 = 5.8728 < 7.6346] w=0.2652 to align # Constraint # added constraint: constraint((T0300)I68.CB, (T0300)T93.CB) [> 4.6554 = 7.7590 < 10.0867] w=0.2652 to align # Constraint # added constraint: constraint((T0300)G61.CA, (T0300)V96.CB) [> 4.3971 = 7.3286 < 9.5271] w=0.2652 to align # Constraint # added constraint: constraint((T0300)L60.CB, (T0300)V96.CB) [> 3.9256 = 6.5427 < 8.5055] w=0.2652 to align # Constraint # added constraint: constraint((T0300)S57.CB, (T0300)V98.CB) [> 4.0120 = 6.6867 < 8.6928] w=0.2652 to align # Constraint # added constraint: constraint((T0300)V54.CB, (T0300)V98.CB) [> 3.9835 = 6.6391 < 8.6308] w=0.2652 to align # Constraint # added constraint: constraint((T0300)I53.CB, (T0300)V98.CB) [> 3.0963 = 5.1606 < 6.7087] w=0.2652 to align # Constraint # added constraint: constraint((T0300)E50.CB, (T0300)V98.CB) [> 4.5962 = 7.6603 < 9.9584] w=0.2652 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)S56.CB) [> 2.5821 = 4.3036 < 5.5947] w=0.2652 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)S55.CB) [> 2.9039 = 4.8398 < 6.2917] w=0.2652 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)T45.CB) [> 4.1286 = 6.8810 < 8.9453] w=0.2490 to align # Constraint # added constraint: constraint((T0300)L20.CB, (T0300)E82.CB) [> 3.7970 = 6.3283 < 8.2268] w=0.2479 to align # Constraint # added constraint: constraint((T0300)K21.CB, (T0300)V37.CB) [> 3.7720 = 6.2867 < 8.1727] w=0.2303 to align # Constraint # added constraint: constraint((T0300)Y10.CB, (T0300)K48.CB) [> 2.7223 = 4.5372 < 5.8984] w=0.2303 to align # Constraint # added constraint: constraint((T0300)A46.CB, (T0300)Q90.CB) [> 4.0068 = 6.6780 < 8.6814] w=0.2303 to align # Constraint # added constraint: constraint((T0300)V54.CB, (T0300)S91.CB) [> 2.1252 = 3.5421 < 4.6047] w=0.2303 to align # Constraint # added constraint: constraint((T0300)R58.CB, (T0300)T93.CB) [> 4.3849 = 7.3081 < 9.5006] w=0.2303 to align # Constraint # added constraint: constraint((T0300)L85.CB, (T0300)L94.CB) [> 3.4514 = 5.7523 < 7.4780] w=0.2303 to align # Constraint # added constraint: constraint((T0300)I52.CB, (T0300)V72.CB) [> 3.7421 = 6.2369 < 8.1079] w=0.2244 to align # Constraint # added constraint: constraint((T0300)V17.CB, (T0300)I68.CB) [> 4.0833 = 6.8056 < 8.8472] w=0.1982 to align # Constraint # added constraint: constraint((T0300)V17.CB, (T0300)V72.CB) [> 4.0727 = 6.7878 < 8.8241] w=0.1982 to align # Constraint # added constraint: constraint((T0300)N24.CB, (T0300)M65.CB) [> 3.8038 = 6.3397 < 8.2417] w=0.1982 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)A36.CB) [> 3.7789 = 6.2981 < 8.1876] w=0.1855 to align # Constraint # added constraint: constraint((T0300)V17.CB, (T0300)L27.CB) [> 4.4491 = 7.4152 < 9.6397] w=0.1855 to align # Constraint # added constraint: constraint((T0300)I43.CB, (T0300)I52.CB) [> 3.9487 = 6.5811 < 8.5555] w=0.1855 to align # Constraint # added constraint: constraint((T0300)I43.CB, (T0300)I53.CB) [> 3.4234 = 5.7057 < 7.4174] w=0.1855 to align # Constraint # added constraint: constraint((T0300)L44.CB, (T0300)V54.CB) [> 3.5455 = 5.9092 < 7.6819] w=0.1855 to align # Constraint # added constraint: constraint((T0300)G61.CA, (T0300)A76.CB) [> 3.6334 = 6.0557 < 7.8724] w=0.1855 to align # Constraint # added constraint: constraint((T0300)A64.CB, (T0300)A77.CB) [> 4.1078 = 6.8464 < 8.9003] w=0.1855 to align # Constraint # added constraint: constraint((T0300)V37.CB, (T0300)R49.CB) [> 3.8543 = 6.4239 < 8.3511] w=0.1820 to align # Constraint # added constraint: constraint((T0300)V37.CB, (T0300)V80.CB) [> 3.7672 = 6.2786 < 8.1622] w=0.1791 to align # Constraint # added constraint: constraint((T0300)A79.CB, (T0300)R95.CB) [> 3.9073 = 6.5122 < 8.4658] w=0.1791 to align # Constraint # added constraint: constraint((T0300)A79.CB, (T0300)V96.CB) [> 4.4776 = 7.4627 < 9.7015] w=0.1791 to align # Constraint # added constraint: constraint((T0300)L85.CB, (T0300)R95.CB) [> 2.8774 = 4.7956 < 6.2343] w=0.1791 to align # Constraint # added constraint: constraint((T0300)S57.CB, (T0300)L94.CB) [> 4.3813 = 7.3022 < 9.4929] w=0.1777 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)E50.CB) [> 3.2873 = 5.4789 < 7.1226] w=0.1700 to align # Constraint # added constraint: constraint((T0300)I68.CB, (T0300)L89.CB) [> 4.1934 = 6.9890 < 9.0856] w=0.1700 to align # Constraint # added constraint: constraint((T0300)V14.CB, (T0300)A46.CB) [> 4.4879 = 7.4798 < 9.7237] w=0.1660 to align # Constraint # added constraint: constraint((T0300)V31.CB, (T0300)L89.CB) [> 2.8090 = 4.6817 < 6.0862] w=0.1636 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)E23.CB) [> 3.4651 = 5.7752 < 7.5078] w=0.1636 to align # Constraint # added constraint: constraint((T0300)T26.CB, (T0300)L94.CB) [> 4.2754 = 7.1257 < 9.2635] w=0.1500 to align # Constraint # added constraint: constraint((T0300)M13.CB, (T0300)V80.CB) [> 4.3376 = 7.2294 < 9.3982] w=0.1500 to align # Constraint # added constraint: constraint((T0300)T86.CB, (T0300)V96.CB) [> 3.2796 = 5.4659 < 7.1057] w=0.1500 to align # Constraint # added constraint: constraint((T0300)S57.CB, (T0300)R73.CB) [> 3.7470 = 6.2449 < 8.1184] w=0.1500 to align # Constraint # added constraint: constraint((T0300)I52.CB, (T0300)S91.CB) [> 3.9922 = 6.6537 < 8.6499] w=0.1500 to align # Constraint # added constraint: constraint((T0300)K32.CB, (T0300)R73.CB) [> 4.5878 = 7.6464 < 9.9403] w=0.1500 to align # Constraint # added constraint: constraint((T0300)K30.CB, (T0300)L94.CB) [> 4.3085 = 7.1807 < 9.3350] w=0.1500 to align # Constraint # added constraint: constraint((T0300)L27.CB, (T0300)E69.CB) [> 4.0626 = 6.7710 < 8.8023] w=0.1480 to align # Constraint # added constraint: constraint((T0300)K21.CB, (T0300)V54.CB) [> 4.3453 = 7.2422 < 9.4149] w=0.1477 to align # Constraint # added constraint: constraint((T0300)S51.CB, (T0300)A76.CB) [> 3.4011 = 5.6686 < 7.3691] w=0.1458 to align # Constraint # added constraint: constraint((T0300)S51.CB, (T0300)R75.CB) [> 3.0492 = 5.0820 < 6.6066] w=0.1458 to align # Constraint # added constraint: constraint((T0300)S51.CB, (T0300)V72.CB) [> 4.6125 = 7.6874 < 9.9937] w=0.1458 to align # Constraint # added constraint: constraint((T0300)S51.CB, (T0300)K71.CB) [> 4.5592 = 7.5987 < 9.8783] w=0.1458 to align # Constraint # added constraint: constraint((T0300)E69.CB, (T0300)L85.CB) [> 4.2046 = 7.0077 < 9.1100] w=0.1458 to align # Constraint # added constraint: constraint((T0300)V37.CB, (T0300)I52.CB) [> 4.7810 = 7.9684 < 10.3589] w=0.1426 to align # Constraint # added constraint: constraint((T0300)A36.CB, (T0300)G61.CA) [> 3.9196 = 6.5327 < 8.4925] w=0.1228 to align # Constraint # added constraint: constraint((T0300)L85.CB, (T0300)D97.CB) [> 4.6879 = 7.8131 < 10.1570] w=0.1194 to align # Constraint # added constraint: constraint((T0300)V80.CB, (T0300)D97.CB) [> 3.0774 = 5.1290 < 6.6677] w=0.1194 to align # Constraint # added constraint: constraint((T0300)A79.CB, (T0300)D97.CB) [> 4.1710 = 6.9516 < 9.0371] w=0.1194 to align # Constraint # added constraint: constraint((T0300)L20.CB, (T0300)V96.CB) [> 4.6252 = 7.7087 < 10.0213] w=0.1000 to align # Constraint # added constraint: constraint((T0300)S42.CB, (T0300)S51.CB) [> 3.5864 = 5.9774 < 7.7706] w=0.0985 to align # Constraint # added constraint: constraint((T0300)S51.CB, (T0300)A79.CB) [> 4.6849 = 7.8081 < 10.1505] w=0.0545 to align # Constraint # added constraint: constraint((T0300)E16.CB, (T0300)V96.CB) [> 4.6095 = 7.6824 < 9.9872] w=0.0500 to align # Constraint # added constraint: constraint((T0300)K30.CB, (T0300)M65.CB) [> 2.7688 = 4.6147 < 5.9991] w=0.0493 to align # Constraint # added constraint: constraint((T0300)K30.CB, (T0300)I68.CB) [> 3.8631 = 6.4385 < 8.3700] w=0.0493 to align # Constraint # added constraint: constraint((T0300)S38.CB, (T0300)S51.CB) [> 3.5864 = 5.9774 < 7.7706] w=0.0492 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0300/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0300/decoys/ # ReadConformPDB reading from PDB file georgesuggestion.renum.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotate5monomer.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotate5monomerFixed2.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry2attempt1.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry2attempt2.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry3attempt1.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry3attempt2.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry3attempt3.fix.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateFromTry3attempt3.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotateNterm2FromTry3.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-rotate5.pdb.gz looking for chain 'A' model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-rotate5 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-rotate5fixed.pdb.gz looking for chain 'A' model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-rotate5fixed # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-rotateNterm2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-rotateNterm2 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer.flipped180.renum.pdb.gz looking for chain 'A' model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation dimer//dimer.flipped180.renum # ReadConformPDB reading from PDB file ../dimer/decoys/dimer.rot5.renum.pdb.gz looking for chain 'A' model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation dimer//dimer.rot5.renum # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 10 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0300)S3.O and (T0300)K4.N only 0.000 apart, marking (T0300)K4.N as missing WARNING: atoms too close: (T0300)L27.O and (T0300)K28.N only 0.000 apart, marking (T0300)K28.N as missing # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0300)K30.O and (T0300)V31.N only 0.000 apart, marking (T0300)V31.N as missing WARNING: atoms too close: (T0300)E82.O and (T0300)Q83.N only 0.000 apart, marking (T0300)Q83.N as missing # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0300 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.7480 model score 2.0326 model score 1.9603 model score 1.9662 model score 1.9325 model score 1.8870 model score 1.8203 model score 1.9616 model score 1.9616 model score 2.0364 model score 2.0326 model score 1.9603 model score 2.0364 model score 2.0364 model score 1.9603 model score 2.3275 model score 2.3275 model score 2.3275 model score 2.3275 model score 2.3275 model score 2.3275 model score 2.3275 model score 2.6873 model score 1.5394 model score 1.4044 model score 1.8600 model score 2.1434 model score 1.5394 model score 1.4044 model score 1.4308 model score 1.6501 model score 1.4009 model score 2.2109 model score 1.8838 model score 2.0451 model score 1.7599 model score 1.7792 model score 1.7540 model score 2.0575 model score 1.9555 model score 2.4835 model score 2.5222 model score 2.4499 model score 2.0394 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0771 model score 1.7540 model score 1.4267 model score 1.3405 model score 1.3412 model score 1.6970 model score 1.7599 model score 1.7792 model score 1.7792 model score 1.5834 model score 2.6557 model score 2.0882 model score 2.8962 model score 2.3402 model score 2.6425 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9259 model score 2.1103 model score 1.9034 model score 2.1640 model score 2.0740 model score 1.9619 model score 1.8590 model score 2.0021 model score 1.6541 model score 1.3059 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0689 model score 3.0580 model score 1.6970 model score 2.2200 model score 1.6502 model score 2.4558 model score 1.8466 model score 2.3928 model score 1.9617 model score 2.7386 model score 2.2562 model score 1.9334 model score 2.9292 model score 1.7077 model score 1.7015 model score 1.4523 model score 1.4031 model score 1.5618 model score 1.9499 model score 1.7625 model score 1.3905 model score 1.3899 model score 1.8830 model score 1.2771 model score 1.8723 model score 1.8149 model score 2.0122 model score 2.2991 model score 2.2338 model score 1.1871 model score 1.2296 model score 1.3220 model score 1.2425 model score 1.5407 model score 1.9499 model score 2.2551 model score 1.7372 model score 1.7219 model score 1.5879 model score 2.3111 model score 1.6725 model score 1.6739 model score 1.5185 model score 1.4518 model score 2.1194 model score 1.6591 model score 1.9794 model score 1.9551 model score 1.6725 model score 1.6742 model score 1.9810 model score 1.5729 model score 1.8676 model score 2.7287 model score 2.4181 model score 1.8025 model score 1.4931 model score 1.9652 model score 1.8596 model score 1.8619 model score 1.5856 model score 1.5876 model score 1.6488 model score 2.9400 model score 1.5469 model score 2.2206 model score 1.7352 model score 1.4291 model score 1.6841 model score 2.4428 model score 2.4383 model score 1.3176 model score 1.6928 model score 1.5776 model score 2.4774 model score 1.7564 model score 1.2097 model score 1.7479 model score 2.3679 model score 1.4451 model score 1.7868 model score 1.8247 model score 1.5729 model score 1.8153 model score 1.4999 model score 1.7081 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8356 model score 1.5716 model score 1.2905 model score 1.5485 model score 1.5015 model score 2.2303 model score 1.6441 model score 1.4476 model score 1.6826 model score 1.6841 model score 1.7683 model score 1.5900 model score 2.1464 model score 1.5371 model score 1.7632 model score 2.9266 model score 1.8112 model score 1.6559 model score 2.2303 model score 2.7311 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8868 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3175 model score 1.3410 model score 1.3131 model score 1.3450 model score 1.5888 model score 1.6099 model score 1.7464 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7599 model score 1.9700 model score 2.1683 model score 1.8194 model score 2.5691 model score 3.0111 model score 2.2523 model score 2.3076 model score 1.9285 model score 1.8656 model score 1.7880 model score 1.5754 model score 1.5564 model score 1.6753 model score 1.9840 model score 1.8956 model score 1.9704 model score 2.3147 model score 2.2391 model score 2.1016 model score 1.4220 model score 1.8560 model score 2.1867 model score 2.3852 model score 2.1377 model score 1.9834 model score 1.2782 model score 2.0382 USE_META, weight: 0.7302 cost: 1.7480 min: 1.1871 max: 3.0580 USE_META, weight: 0.5933 cost: 2.0326 min: 1.1871 max: 3.0580 USE_META, weight: 0.6281 cost: 1.9603 min: 1.1871 max: 3.0580 USE_META, weight: 0.6252 cost: 1.9662 min: 1.1871 max: 3.0580 USE_META, weight: 0.6414 cost: 1.9325 min: 1.1871 max: 3.0580 USE_META, weight: 0.6633 cost: 1.8870 min: 1.1871 max: 3.0580 USE_META, weight: 0.6954 cost: 1.8203 min: 1.1871 max: 3.0580 USE_META, weight: 0.6274 cost: 1.9616 min: 1.1871 max: 3.0580 USE_META, weight: 0.6274 cost: 1.9616 min: 1.1871 max: 3.0580 USE_META, weight: 0.5914 cost: 2.0364 min: 1.1871 max: 3.0580 USE_META, weight: 0.5933 cost: 2.0326 min: 1.1871 max: 3.0580 USE_META, weight: 0.6281 cost: 1.9603 min: 1.1871 max: 3.0580 USE_META, weight: 0.5914 cost: 2.0364 min: 1.1871 max: 3.0580 USE_META, weight: 0.5914 cost: 2.0364 min: 1.1871 max: 3.0580 USE_META, weight: 0.6280 cost: 1.9603 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.4514 cost: 2.3275 min: 1.1871 max: 3.0580 USE_META, weight: 0.2783 cost: 2.6873 min: 1.1871 max: 3.0580 USE_META, weight: 0.8305 cost: 1.5394 min: 1.1871 max: 3.0580 USE_META, weight: 0.8955 cost: 1.4044 min: 1.1871 max: 3.0580 USE_META, weight: 0.6763 cost: 1.8600 min: 1.1871 max: 3.0580 USE_META, weight: 0.5400 cost: 2.1434 min: 1.1871 max: 3.0580 USE_META, weight: 0.8305 cost: 1.5394 min: 1.1871 max: 3.0580 USE_META, weight: 0.8955 cost: 1.4044 min: 1.1871 max: 3.0580 USE_META, weight: 0.8828 cost: 1.4308 min: 1.1871 max: 3.0580 USE_META, weight: 0.7773 cost: 1.6501 min: 1.1871 max: 3.0580 USE_META, weight: 0.8971 cost: 1.4009 min: 1.1871 max: 3.0580 USE_META, weight: 0.5075 cost: 2.2109 min: 1.1871 max: 3.0580 USE_META, weight: 0.6648 cost: 1.8838 min: 1.1871 max: 3.0580 USE_META, weight: 0.5873 cost: 2.0451 min: 1.1871 max: 3.0580 USE_META, weight: 0.7245 cost: 1.7599 min: 1.1871 max: 3.0580 USE_META, weight: 0.7152 cost: 1.7792 min: 1.1871 max: 3.0580 USE_META, weight: 0.7273 cost: 1.7540 min: 1.1871 max: 3.0580 USE_META, weight: 0.5813 cost: 2.0575 min: 1.1871 max: 3.0580 USE_META, weight: 0.6304 cost: 1.9555 min: 1.1871 max: 3.0580 USE_META, weight: 0.3764 cost: 2.4835 min: 1.1871 max: 3.0580 USE_META, weight: 0.3578 cost: 2.5222 min: 1.1871 max: 3.0580 USE_META, weight: 0.3926 cost: 2.4499 min: 1.1871 max: 3.0580 USE_META, weight: 0.5900 cost: 2.0394 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.5719 cost: 2.0771 min: 1.1871 max: 3.0580 USE_META, weight: 0.7273 cost: 1.7540 min: 1.1871 max: 3.0580 USE_META, weight: 0.8847 cost: 1.4267 min: 1.1871 max: 3.0580 USE_META, weight: 0.9262 cost: 1.3405 min: 1.1871 max: 3.0580 USE_META, weight: 0.9258 cost: 1.3412 min: 1.1871 max: 3.0580 USE_META, weight: 0.7547 cost: 1.6970 min: 1.1871 max: 3.0580 USE_META, weight: 0.7245 cost: 1.7599 min: 1.1871 max: 3.0580 USE_META, weight: 0.7152 cost: 1.7792 min: 1.1871 max: 3.0580 USE_META, weight: 0.7152 cost: 1.7792 min: 1.1871 max: 3.0580 USE_META, weight: 0.8094 cost: 1.5834 min: 1.1871 max: 3.0580 USE_META, weight: 0.2935 cost: 2.6557 min: 1.1871 max: 3.0580 USE_META, weight: 0.5665 cost: 2.0882 min: 1.1871 max: 3.0580 USE_META, weight: 0.1779 cost: 2.8962 min: 1.1871 max: 3.0580 USE_META, weight: 0.4453 cost: 2.3402 min: 1.1871 max: 3.0580 USE_META, weight: 0.2999 cost: 2.6425 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.6446 cost: 1.9259 min: 1.1871 max: 3.0580 USE_META, weight: 0.5559 cost: 2.1103 min: 1.1871 max: 3.0580 USE_META, weight: 0.6554 cost: 1.9034 min: 1.1871 max: 3.0580 USE_META, weight: 0.5301 cost: 2.1640 min: 1.1871 max: 3.0580 USE_META, weight: 0.5733 cost: 2.0740 min: 1.1871 max: 3.0580 USE_META, weight: 0.6273 cost: 1.9619 min: 1.1871 max: 3.0580 USE_META, weight: 0.6768 cost: 1.8590 min: 1.1871 max: 3.0580 USE_META, weight: 0.6079 cost: 2.0021 min: 1.1871 max: 3.0580 USE_META, weight: 0.7754 cost: 1.6541 min: 1.1871 max: 3.0580 USE_META, weight: 0.9429 cost: 1.3059 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.5758 cost: 2.0689 min: 1.1871 max: 3.0580 USE_META, weight: 0.1000 cost: 3.0580 min: 1.1871 max: 3.0580 USE_META, weight: 0.7547 cost: 1.6970 min: 1.1871 max: 3.0580 USE_META, weight: 0.5031 cost: 2.2200 min: 1.1871 max: 3.0580 USE_META, weight: 0.7772 cost: 1.6502 min: 1.1871 max: 3.0580 USE_META, weight: 0.3897 cost: 2.4558 min: 1.1871 max: 3.0580 USE_META, weight: 0.6828 cost: 1.8466 min: 1.1871 max: 3.0580 USE_META, weight: 0.4200 cost: 2.3928 min: 1.1871 max: 3.0580 USE_META, weight: 0.6274 cost: 1.9617 min: 1.1871 max: 3.0580 USE_META, weight: 0.2537 cost: 2.7386 min: 1.1871 max: 3.0580 USE_META, weight: 0.4857 cost: 2.2562 min: 1.1871 max: 3.0580 USE_META, weight: 0.6410 cost: 1.9334 min: 1.1871 max: 3.0580 USE_META, weight: 0.1620 cost: 2.9292 min: 1.1871 max: 3.0580 USE_META, weight: 0.7496 cost: 1.7077 min: 1.1871 max: 3.0580 USE_META, weight: 0.7525 cost: 1.7015 min: 1.1871 max: 3.0580 USE_META, weight: 0.8724 cost: 1.4523 min: 1.1871 max: 3.0580 USE_META, weight: 0.8961 cost: 1.4031 min: 1.1871 max: 3.0580 USE_META, weight: 0.8198 cost: 1.5618 min: 1.1871 max: 3.0580 USE_META, weight: 0.6330 cost: 1.9499 min: 1.1871 max: 3.0580 USE_META, weight: 0.7232 cost: 1.7625 min: 1.1871 max: 3.0580 USE_META, weight: 0.9021 cost: 1.3905 min: 1.1871 max: 3.0580 USE_META, weight: 0.9025 cost: 1.3899 min: 1.1871 max: 3.0580 USE_META, weight: 0.6652 cost: 1.8830 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.6704 cost: 1.8723 min: 1.1871 max: 3.0580 USE_META, weight: 0.6980 cost: 1.8149 min: 1.1871 max: 3.0580 USE_META, weight: 0.6031 cost: 2.0122 min: 1.1871 max: 3.0580 USE_META, weight: 0.4651 cost: 2.2991 min: 1.1871 max: 3.0580 USE_META, weight: 0.4965 cost: 2.2338 min: 1.1871 max: 3.0580 USE_META, weight: 1.0000 cost: 1.1871 min: 1.1871 max: 3.0580 USE_META, weight: 0.9795 cost: 1.2296 min: 1.1871 max: 3.0580 USE_META, weight: 0.9351 cost: 1.3220 min: 1.1871 max: 3.0580 USE_META, weight: 0.9733 cost: 1.2425 min: 1.1871 max: 3.0580 USE_META, weight: 0.8299 cost: 1.5407 min: 1.1871 max: 3.0580 USE_META, weight: 0.6330 cost: 1.9499 min: 1.1871 max: 3.0580 USE_META, weight: 0.4862 cost: 2.2551 min: 1.1871 max: 3.0580 USE_META, weight: 0.7354 cost: 1.7372 min: 1.1871 max: 3.0580 USE_META, weight: 0.7427 cost: 1.7219 min: 1.1871 max: 3.0580 USE_META, weight: 0.8072 cost: 1.5879 min: 1.1871 max: 3.0580 USE_META, weight: 0.4593 cost: 2.3111 min: 1.1871 max: 3.0580 USE_META, weight: 0.7665 cost: 1.6725 min: 1.1871 max: 3.0580 USE_META, weight: 0.7659 cost: 1.6739 min: 1.1871 max: 3.0580 USE_META, weight: 0.8406 cost: 1.5185 min: 1.1871 max: 3.0580 USE_META, weight: 0.8727 cost: 1.4518 min: 1.1871 max: 3.0580 USE_META, weight: 0.5515 cost: 2.1194 min: 1.1871 max: 3.0580 USE_META, weight: 0.7730 cost: 1.6591 min: 1.1871 max: 3.0580 USE_META, weight: 0.6189 cost: 1.9794 min: 1.1871 max: 3.0580 USE_META, weight: 0.6306 cost: 1.9551 min: 1.1871 max: 3.0580 USE_META, weight: 0.7665 cost: 1.6725 min: 1.1871 max: 3.0580 USE_META, weight: 0.7657 cost: 1.6742 min: 1.1871 max: 3.0580 USE_META, weight: 0.6181 cost: 1.9810 min: 1.1871 max: 3.0580 USE_META, weight: 0.8144 cost: 1.5729 min: 1.1871 max: 3.0580 USE_META, weight: 0.6727 cost: 1.8676 min: 1.1871 max: 3.0580 USE_META, weight: 0.2584 cost: 2.7287 min: 1.1871 max: 3.0580 USE_META, weight: 0.4079 cost: 2.4181 min: 1.1871 max: 3.0580 USE_META, weight: 0.7039 cost: 1.8025 min: 1.1871 max: 3.0580 USE_META, weight: 0.8528 cost: 1.4931 min: 1.1871 max: 3.0580 USE_META, weight: 0.6257 cost: 1.9652 min: 1.1871 max: 3.0580 USE_META, weight: 0.6765 cost: 1.8596 min: 1.1871 max: 3.0580 USE_META, weight: 0.6754 cost: 1.8619 min: 1.1871 max: 3.0580 USE_META, weight: 0.8083 cost: 1.5856 min: 1.1871 max: 3.0580 USE_META, weight: 0.8073 cost: 1.5876 min: 1.1871 max: 3.0580 USE_META, weight: 0.7779 cost: 1.6488 min: 1.1871 max: 3.0580 USE_META, weight: 0.1568 cost: 2.9400 min: 1.1871 max: 3.0580 USE_META, weight: 0.8269 cost: 1.5469 min: 1.1871 max: 3.0580 USE_META, weight: 0.5029 cost: 2.2206 min: 1.1871 max: 3.0580 USE_META, weight: 0.7364 cost: 1.7352 min: 1.1871 max: 3.0580 USE_META, weight: 0.8836 cost: 1.4291 min: 1.1871 max: 3.0580 USE_META, weight: 0.7609 cost: 1.6841 min: 1.1871 max: 3.0580 USE_META, weight: 0.3960 cost: 2.4428 min: 1.1871 max: 3.0580 USE_META, weight: 0.3981 cost: 2.4383 min: 1.1871 max: 3.0580 USE_META, weight: 0.9372 cost: 1.3176 min: 1.1871 max: 3.0580 USE_META, weight: 0.7567 cost: 1.6928 min: 1.1871 max: 3.0580 USE_META, weight: 0.8121 cost: 1.5776 min: 1.1871 max: 3.0580 USE_META, weight: 0.3793 cost: 2.4774 min: 1.1871 max: 3.0580 USE_META, weight: 0.7261 cost: 1.7564 min: 1.1871 max: 3.0580 USE_META, weight: 0.9891 cost: 1.2097 min: 1.1871 max: 3.0580 USE_META, weight: 0.7302 cost: 1.7479 min: 1.1871 max: 3.0580 USE_META, weight: 0.4320 cost: 2.3679 min: 1.1871 max: 3.0580 USE_META, weight: 0.8759 cost: 1.4451 min: 1.1871 max: 3.0580 USE_META, weight: 0.7115 cost: 1.7868 min: 1.1871 max: 3.0580 USE_META, weight: 0.6933 cost: 1.8247 min: 1.1871 max: 3.0580 USE_META, weight: 0.8144 cost: 1.5729 min: 1.1871 max: 3.0580 USE_META, weight: 0.6978 cost: 1.8153 min: 1.1871 max: 3.0580 USE_META, weight: 0.8495 cost: 1.4999 min: 1.1871 max: 3.0580 USE_META, weight: 0.7494 cost: 1.7081 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.6881 cost: 1.8356 min: 1.1871 max: 3.0580 USE_META, weight: 0.8150 cost: 1.5716 min: 1.1871 max: 3.0580 USE_META, weight: 0.9503 cost: 1.2905 min: 1.1871 max: 3.0580 USE_META, weight: 0.8262 cost: 1.5485 min: 1.1871 max: 3.0580 USE_META, weight: 0.8488 cost: 1.5015 min: 1.1871 max: 3.0580 USE_META, weight: 0.4982 cost: 2.2303 min: 1.1871 max: 3.0580 USE_META, weight: 0.7801 cost: 1.6441 min: 1.1871 max: 3.0580 USE_META, weight: 0.8747 cost: 1.4476 min: 1.1871 max: 3.0580 USE_META, weight: 0.7616 cost: 1.6826 min: 1.1871 max: 3.0580 USE_META, weight: 0.7609 cost: 1.6841 min: 1.1871 max: 3.0580 USE_META, weight: 0.7204 cost: 1.7683 min: 1.1871 max: 3.0580 USE_META, weight: 0.8062 cost: 1.5900 min: 1.1871 max: 3.0580 USE_META, weight: 0.5385 cost: 2.1464 min: 1.1871 max: 3.0580 USE_META, weight: 0.8316 cost: 1.5371 min: 1.1871 max: 3.0580 USE_META, weight: 0.7229 cost: 1.7632 min: 1.1871 max: 3.0580 USE_META, weight: 0.1632 cost: 2.9266 min: 1.1871 max: 3.0580 USE_META, weight: 0.6998 cost: 1.8112 min: 1.1871 max: 3.0580 USE_META, weight: 0.7745 cost: 1.6559 min: 1.1871 max: 3.0580 USE_META, weight: 0.4982 cost: 2.2303 min: 1.1871 max: 3.0580 USE_META, weight: 0.2573 cost: 2.7311 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.6634 cost: 1.8868 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9373 cost: 1.3175 min: 1.1871 max: 3.0580 USE_META, weight: 0.9260 cost: 1.3410 min: 1.1871 max: 3.0580 USE_META, weight: 0.9394 cost: 1.3131 min: 1.1871 max: 3.0580 USE_META, weight: 0.9240 cost: 1.3450 min: 1.1871 max: 3.0580 USE_META, weight: 0.8068 cost: 1.5888 min: 1.1871 max: 3.0580 USE_META, weight: 0.7966 cost: 1.6099 min: 1.1871 max: 3.0580 USE_META, weight: 0.7310 cost: 1.7464 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.9567 cost: 1.2771 min: 1.1871 max: 3.0580 USE_META, weight: 0.7245 cost: 1.7599 min: 1.1871 max: 3.0580 USE_META, weight: 0.6234 cost: 1.9700 min: 1.1871 max: 3.0580 USE_META, weight: 0.5280 cost: 2.1683 min: 1.1871 max: 3.0580 USE_META, weight: 0.6958 cost: 1.8194 min: 1.1871 max: 3.0580 USE_META, weight: 0.3352 cost: 2.5691 min: 1.1871 max: 3.0580 USE_META, weight: 0.1226 cost: 3.0111 min: 1.1871 max: 3.0580 USE_META, weight: 0.4876 cost: 2.2523 min: 1.1871 max: 3.0580 USE_META, weight: 0.4610 cost: 2.3076 min: 1.1871 max: 3.0580 USE_META, weight: 0.6434 cost: 1.9285 min: 1.1871 max: 3.0580 USE_META, weight: 0.6736 cost: 1.8656 min: 1.1871 max: 3.0580 USE_META, weight: 0.7109 cost: 1.7880 min: 1.1871 max: 3.0580 USE_META, weight: 0.8132 cost: 1.5754 min: 1.1871 max: 3.0580 USE_META, weight: 0.8223 cost: 1.5564 min: 1.1871 max: 3.0580 USE_META, weight: 0.7651 cost: 1.6753 min: 1.1871 max: 3.0580 USE_META, weight: 0.6166 cost: 1.9840 min: 1.1871 max: 3.0580 USE_META, weight: 0.6592 cost: 1.8956 min: 1.1871 max: 3.0580 USE_META, weight: 0.6232 cost: 1.9704 min: 1.1871 max: 3.0580 USE_META, weight: 0.4576 cost: 2.3147 min: 1.1871 max: 3.0580 USE_META, weight: 0.4939 cost: 2.2391 min: 1.1871 max: 3.0580 USE_META, weight: 0.5601 cost: 2.1016 min: 1.1871 max: 3.0580 USE_META, weight: 0.8870 cost: 1.4220 min: 1.1871 max: 3.0580 USE_META, weight: 0.6782 cost: 1.8560 min: 1.1871 max: 3.0580 USE_META, weight: 0.5191 cost: 2.1867 min: 1.1871 max: 3.0580 USE_META, weight: 0.4237 cost: 2.3852 min: 1.1871 max: 3.0580 USE_META, weight: 0.5427 cost: 2.1377 min: 1.1871 max: 3.0580 USE_META, weight: 0.6169 cost: 1.9834 min: 1.1871 max: 3.0580 USE_META, weight: 0.9562 cost: 1.2782 min: 1.1871 max: 3.0580 USE_META, weight: 0.5906 cost: 2.0382 min: 1.1871 max: 3.0580 USE_EVALUE, weight: 0.6181 eval: 27.1840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6181 eval: 27.1840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6181 eval: 27.1840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7979 eval: 14.5530 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7979 eval: 14.5530 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7979 eval: 14.5530 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5868 eval: 29.3840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5868 eval: 29.3840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5868 eval: 29.3840 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9947 eval: 0.7220 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9947 eval: 0.7220 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9947 eval: 0.7220 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6376 eval: 25.8150 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6376 eval: 25.8150 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6376 eval: 25.8150 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5348 eval: 33.0390 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5348 eval: 33.0390 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5348 eval: 33.0390 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6910 eval: 22.0630 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6910 eval: 22.0630 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6910 eval: 22.0630 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5540 eval: 31.6950 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5540 eval: 31.6950 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5540 eval: 31.6950 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8639 eval: 9.9100 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8639 eval: 9.9100 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8639 eval: 9.9100 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5470 eval: 32.1860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5470 eval: 32.1860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5470 eval: 32.1860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5626 eval: 31.0860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5626 eval: 31.0860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5626 eval: 31.0860 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.1000 eval: 63.6000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.1000 eval: 63.6000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.1000 eval: 63.6000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7008 eval: 21.3750 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7008 eval: 21.3750 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9993 eval: 0.3952 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9993 eval: 0.3952 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.9993 eval: 0.3952 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6137 eval: 27.4980 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6137 eval: 27.4980 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6137 eval: 27.4980 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8340 eval: 12.0140 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8340 eval: 12.0140 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8340 eval: 12.0140 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 1.0000 eval: 0.3460 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 1.0000 eval: 0.3460 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 1.0000 eval: 0.3460 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5437 eval: 32.4170 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5437 eval: 32.4170 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5437 eval: 32.4170 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5189 eval: 34.1580 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5189 eval: 34.1580 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5189 eval: 34.1580 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5550 eval: 31.6210 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5550 eval: 31.6210 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.5550 eval: 31.6210 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7434 eval: 18.3790 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7434 eval: 18.3790 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.7434 eval: 18.3790 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6720 eval: 23.4000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6720 eval: 23.4000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6720 eval: 23.4000 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8840 eval: 8.5018 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8840 eval: 8.5018 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.8840 eval: 8.5018 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6960 eval: 21.7150 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6960 eval: 21.7150 min: 0.3460 max: 63.6000 USE_EVALUE, weight: 0.6960 eval: 21.7150 min: 0.3460 max: 63.6000 Number of contacts in models: 258 Number of contacts in alignments: 71 NUMB_ALIGNS: 71 Adding 3526 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -174.8332, CN propb: -174.8332 weights: 0.3098 constraints: 216 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 216 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 216 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 3310 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 3310 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 3526 # command: