# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0298/ # command:# Making conformation for sequence T0298 numbered 1 through 336 Created new target T0298 from T0298.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0298/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0298/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0298//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0298/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0298/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0298/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bkaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0298 read from 2bkaA/merged-good-all-a2m # 2bkaA read from 2bkaA/merged-good-all-a2m # found chain 2bkaA in training set T0298 4 :PLNVAVVGATGSVGEALVGLLDERD 2bkaA 18 :NKSVFILGASGETGRVLLKEILEQG # choosing archetypes in rotamer library T0298 29 :FPLHRLHL 2bkaA 44 :FSKVTLIG T0298 46 :RMGFA 2bkaA 54 :KLTFD T0298 51 :ESSLRVGDVDSFD 2bkaA 64 :NVNQEVVDFEKLD T0298 64 :FSSVGLAFFAAAAE 2bkaA 82 :FQGHDVGFCCLGTT T0298 78 :VSRAHAERARAAGCSVIDLSGALE 2bkaA 111 :YVLKSAELAKAGGCKHFNLLSSKG T0298 118 :ASQAAP 2bkaA 136 :DKSSNF T0298 134 :AELCEVLAPLLATLDCRQLNLTA 2bkaA 144 :LQVKGEVEAKVEELKFDRYSVFR T0298 175 :TAELLNARPL 2bkaA 167 :PGVLLCDRQE T0298 185 :EPRLFDRQI 2bkaA 193 :DSWASGHSV T0298 199 :A 2bkaA 202 :P T0298 213 :ERRIFAEV 2bkaA 203 :VVTVVRAM T0298 221 :QALLGERIGPLNVT 2bkaA 212 :NNVVRPRDKQMELL T0298 257 :DLAAVTRV 2bkaA 226 :ENKAIHDL Number of specific fragments extracted= 14 number of extra gaps= 0 total=14 Number of alignments=1 # 2bkaA read from 2bkaA/merged-good-all-a2m # found chain 2bkaA in training set T0298 4 :PLNVAVVGATGSVGEALVGLLDERDF 2bkaA 18 :NKSVFILGASGETGRVLLKEILEQGL T0298 30 :PLHRLHL 2bkaA 45 :SKVTLIG T0298 39 :SAE 2bkaA 52 :RRK T0298 42 :SAGQRMGFAESSLRVGDVDSFD 2bkaA 58 :DEEAYKNVNQEVVDFEKLDDYA T0298 64 :FSSVGLAFFAAAAEVS 2bkaA 82 :FQGHDVGFCCLGTTRG T0298 80 :RAHAERARAAGCSVIDLSGALEPS 2bkaA 113 :LKSAELAKAGGCKHFNLLSSKGAD T0298 104 :V 2bkaA 138 :S T0298 135 :ELCEVLAPLLATLDCRQLNLTA 2bkaA 145 :QVKGEVEAKVEELKFDRYSVFR T0298 175 :TAELLNAR 2bkaA 167 :PGVLLCDR T0298 205 :DAEG 2bkaA 175 :QESR T0298 211 :AIERRIFAEVQA 2bkaA 179 :PGEWLVRKFFGS T0298 224 :LGER 2bkaA 191 :LPDS T0298 228 :IGPLN 2bkaA 198 :GHSVP T0298 258 :LAAVTRVLDAT 2bkaA 203 :VVTVVRAMLNN T0298 269 :KGIEWVG 2bkaA 220 :KQMELLE Number of specific fragments extracted= 15 number of extra gaps= 0 total=29 Number of alignments=2 # 2bkaA read from 2bkaA/merged-good-all-a2m # found chain 2bkaA in training set T0298 4 :PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 2bkaA 18 :NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR T0298 46 :RMGFAES 2bkaA 54 :KLTFDEE T0298 53 :SLRVGDVDSFDFSS 2bkaA 64 :NVNQEVVDFEKLDD T0298 67 :VGLAFFAAA 2bkaA 85 :HDVGFCCLG T0298 76 :AEVSRAHAERARAAGCSVIDLSGALEPS 2bkaA 109 :RDYVLKSAELAKAGGCKHFNLLSSKGAD T0298 104 :VAPP 2bkaA 138 :SSNF T0298 115 :ERLA 2bkaA 142 :LYLQ T0298 135 :ELCEVLAPLLA 2bkaA 146 :VKGEVEAKVEE T0298 147 :LDCRQLNLTAC 2bkaA 157 :LKFDRYSVFRP T0298 163 :LGREG 2bkaA 176 :ESRPG T0298 171 :LARQTAEL 2bkaA 181 :EWLVRKFF T0298 182 :RPLEPRLFD 2bkaA 189 :GSLPDSWAS T0298 191 :RQIA 2bkaA 199 :HSVP T0298 213 :ERRIFAEVQALLG 2bkaA 203 :VVTVVRAMLNNVV T0298 226 :ERIGPLNVT 2bkaA 217 :PRDKQMELL T0298 257 :DLAAVTRV 2bkaA 226 :ENKAIHDL Number of specific fragments extracted= 16 number of extra gaps= 0 total=45 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hyeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1hyeA expands to /projects/compbio/data/pdb/1hye.pdb.gz 1hyeA:# T0298 read from 1hyeA/merged-good-all-a2m # 1hyeA read from 1hyeA/merged-good-all-a2m # adding 1hyeA to template set # found chain 1hyeA in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1hyeA)M1 Warning: unaligning (T0298)F189 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hyeA)F230 Warning: unaligning (T0298)E207 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hyeA)F230 T0298 6 :NVAVVGATGSVGEALVGLLD 1hyeA 2 :KVTIIGASGRVGSATALLLA T0298 28 :DFPLH 1hyeA 22 :KEPFM T0298 33 :RLHLLASAESAGQRMGFA 1hyeA 28 :DLVLIGREHSINKLEGLR T0298 51 :ESSLRVGDVDSFD 1hyeA 58 :DANIYVESDENLR T0298 64 :FSSVGLAFFAAAA 1hyeA 72 :IDESDVVIITSGV T0298 77 :EVSRAHAERARAA 1hyeA 94 :DLAKTNAKIVGKY T0298 114 :AERLASQAAPFLLSS 1hyeA 107 :AKKIAEICDTKIFVI T0298 132 :VAA 1hyeA 122 :TNP T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 1hyeA 125 :VDVMTYKALVDSKFERNQVFGLGTHLD T0298 168 :VKELARQTAELLNA 1hyeA 152 :SLRFKVAIAKFFGV T0298 183 :PL 1hyeA 166 :HI T0298 185 :EPRL 1hyeA 219 :EQII T0298 208 :GHSAIERRIFAE 1hyeA 231 :GPAAAILNVVRC T0298 223 :LLGERIGPLNVTC 1hyeA 243 :IVNNEKRLLTLSA T0298 237 :QA 1hyeA 256 :YV T0298 241 :FFGDSLSVTLQCAE 1hyeA 264 :IRDVCIGVPVKIGR T0298 255 :PVDLAA 1hyeA 287 :ELDKDE T0298 261 :VTRVLDATKG 1hyeA 303 :IKKYCEEVKN Number of specific fragments extracted= 18 number of extra gaps= 0 total=63 Number of alignments=4 # 1hyeA read from 1hyeA/merged-good-all-a2m # found chain 1hyeA in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1hyeA)M1 Warning: unaligning (T0298)N180 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hyeA)F230 Warning: unaligning (T0298)E207 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hyeA)F230 T0298 6 :NVAVVGATGSVGEALVGLLD 1hyeA 2 :KVTIIGASGRVGSATALLLA T0298 28 :DFPLH 1hyeA 22 :KEPFM T0298 33 :RLHLLASAESAGQRMGFAE 1hyeA 28 :DLVLIGREHSINKLEGLRE T0298 52 :SSLRVGDVDSFD 1hyeA 59 :ANIYVESDENLR T0298 64 :FSSVGLAFFAAAAEVS 1hyeA 72 :IDESDVVIITSGVPRK T0298 80 :RAHAERARAA 1hyeA 104 :GKYAKKIAEI T0298 90 :GCSVIDLSGA 1hyeA 115 :DTKIFVITNP T0298 121 :AAPFLLSSPCAVAA 1hyeA 138 :FERNQVFGLGTHLD T0298 136 :LCEVLAPLLATLDCR 1hyeA 152 :SLRFKVAIAKFFGVH T0298 151 :QLNLTACLSVSSL 1hyeA 169 :EVRTRIIGEHGDS T0298 164 :G 1hyeA 193 :G T0298 166 :E 1hyeA 203 :K T0298 168 :VKELARQTA 1hyeA 207 :IDEIIEDVK T0298 177 :ELL 1hyeA 220 :QII T0298 208 :GHSAIERRIF 1hyeA 231 :GPAAAILNVV T0298 221 :QALLGERIGPLNVTCIQ 1hyeA 241 :RCIVNNEKRLLTLSAYV T0298 238 :APVFF 1hyeA 261 :FDGIR T0298 243 :GDSLSVTLQ 1hyeA 268 :CIGVPVKIG T0298 252 :CAE 1hyeA 280 :IEE T0298 255 :PVDLAA 1hyeA 287 :ELDKDE T0298 261 :VTRVLDATKG 1hyeA 303 :IKKYCEEVKN Number of specific fragments extracted= 21 number of extra gaps= 0 total=84 Number of alignments=5 # 1hyeA read from 1hyeA/merged-good-all-a2m # found chain 1hyeA in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1hyeA)M1 Warning: unaligning (T0298)P183 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1hyeA)F230 Warning: unaligning (T0298)S210 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1hyeA)F230 T0298 6 :NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA 1hyeA 2 :KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN T0298 44 :GQRM 1hyeA 54 :GTRS T0298 51 :ESSLRVGDV 1hyeA 58 :DANIYVESD T0298 60 :DSFDFSSVGLAFFAAA 1hyeA 68 :NLRIIDESDVVIITSG T0298 76 :AEVSRAHAERARAA 1hyeA 93 :MDLAKTNAKIVGKY T0298 115 :ERLASQAAPFLLSSPCAVAAELCEVLAP 1hyeA 108 :KKIAEICDTKIFVITNPVDVMTYKALVD T0298 147 :LDCRQLNLTACLS 1hyeA 136 :SKFERNQVFGLGT T0298 165 :REGVKELARQTAEL 1hyeA 149 :HLDSLRFKVAIAKF T0298 179 :LNAR 1hyeA 219 :EQII T0298 211 :AIERRIFAEVQALLGERIGPLNVTCIQ 1hyeA 231 :GPAAAILNVVRCIVNNEKRLLTLSAYV T0298 241 :FFGDSLSVTLQCAEP 1hyeA 264 :IRDVCIGVPVKIGRD T0298 256 :VD 1hyeA 288 :LD T0298 258 :LAAVTRVLDATKG 1hyeA 300 :AEIIKKYCEEVKN Number of specific fragments extracted= 13 number of extra gaps= 0 total=97 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b4rO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b4rO expands to /projects/compbio/data/pdb/2b4r.pdb.gz 2b4rO:# T0298 read from 2b4rO/merged-good-all-a2m # 2b4rO read from 2b4rO/merged-good-all-a2m # adding 2b4rO to template set # found chain 2b4rO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2b4rO)A3 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b4rO)I209 T0298 5 :LNVAVVG 2b4rO 4 :TKLGING T0298 13 :TGSVGEALVGLLDER 2b4rO 11 :FGRIGRLVFRAAFGR T0298 28 :DFPLHRLHL 2b4rO 27 :DIEVVAIND T0298 38 :ASAESAGQRMGFA 2b4rO 38 :MDLNHLCYLLKYD T0298 51 :ESSLRVGDVDSFDFS 2b4rO 74 :VSVFAEKDPSQIPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 2b4rO 91 :QVDVVCESTGVFLTKELASSHLKGGAKKV T0298 96 :LSGALEPSVAPPVMVSVNAERLAS 2b4rO 120 :IMSAPPKDDTPIYVMGINHHQYDT T0298 122 :APFLLSSP 2b4rO 144 :KQLIVSNA T0298 130 :CAVAA 2b4rO 153 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 2b4rO 158 :LAPLAKVINDRFGIVEGLMTTVHASTAN T0298 176 :AELLNARPL 2b4rO 186 :QLVVDGPSK T0298 185 :EPRLFDRQIAF 2b4rO 197 :KDWRAGRCALS T0298 198 :LA 2b4rO 210 :IP T0298 205 :DAEGHSAIERRIFAEVQA 2b4rO 212 :ASTGAAKAVGKVLPELNG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 2b4rO 230 :KLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 2b4rO 272 :PLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLAL T0298 304 :PCQVNLWIVSDN 2b4rO 308 :DNFFKLVSWYDN T0298 317 :RKGAALNAVLLGELLI 2b4rO 320 :EWGYSNRVLDLAVHIT Number of specific fragments extracted= 18 number of extra gaps= 1 total=115 Number of alignments=7 # 2b4rO read from 2b4rO/merged-good-all-a2m # found chain 2b4rO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2b4rO)A3 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b4rO)I209 T0298 5 :LNVAVVGA 2b4rO 4 :TKLGINGF T0298 14 :GSVGEALVGLLD 2b4rO 12 :GRIGRLVFRAAF T0298 28 :DFPLHRLHLLASAE 2b4rO 24 :GRKDIEVVAINDPF T0298 42 :SAGQRMGFAE 2b4rO 39 :DLNHLCYLLK T0298 52 :SSLRVGDVDSFDFS 2b4rO 75 :SVFAEKDPSQIPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 2b4rO 91 :QVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK T0298 103 :SVAPPVMVSVNAERLAS 2b4rO 127 :DDTPIYVMGINHHQYDT T0298 122 :APFLLSSP 2b4rO 144 :KQLIVSNA T0298 130 :CAVAA 2b4rO 153 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 2b4rO 158 :LAPLAKVINDRFGIVEGLMTTVHASTA T0298 177 :ELL 2b4rO 185 :NQL T0298 180 :NARPLEPRLFDRQIAF 2b4rO 192 :PSKGGKDWRAGRCALS T0298 198 :LA 2b4rO 210 :IP T0298 205 :DAEG 2b4rO 212 :ASTG T0298 213 :ERRIFAEV 2b4rO 216 :AAKAVGKV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 2b4rO 224 :LPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 2b4rO 272 :PLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGL T0298 302 :ADPCQVNLWIVSDN 2b4rO 306 :LNDNFFKLVSWYDN T0298 317 :RKGAALNAVLLGELLI 2b4rO 320 :EWGYSNRVLDLAVHIT Number of specific fragments extracted= 19 number of extra gaps= 1 total=134 Number of alignments=8 # 2b4rO read from 2b4rO/merged-good-all-a2m # found chain 2b4rO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2b4rO)A3 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b4rO)I209 T0298 5 :LNVAVVGA 2b4rO 4 :TKLGINGF T0298 14 :GSVGEALVGLLDERDF 2b4rO 12 :GRIGRLVFRAAFGRKD T0298 32 :HRLHLLASAESA 2b4rO 28 :IEVVAINDPFMD T0298 44 :GQRMGFAES 2b4rO 57 :PCEVTHADG T0298 53 :SLRVGDVDSFDFSS 2b4rO 71 :EKKVSVFAEKDPSQ T0298 67 :VGLAFFAAA 2b4rO 92 :VDVVCESTG T0298 80 :RAHAERARAAGCSVIDLSGALE 2b4rO 105 :KELASSHLKGGAKKVIMSAPPK T0298 103 :SVAPPVMVSVNAERLA 2b4rO 127 :DDTPIYVMGINHHQYD T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 2b4rO 143 :TKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLV T0298 182 :RPLEPRLFDRQIAF 2b4rO 189 :VDGPSKGGKDWRAG T0298 198 :LAQVGA 2b4rO 210 :IPASTG T0298 216 :IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 2b4rO 216 :AAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKA T0298 269 :KGIEWVGEG 2b4rO 274 :KGILGYTED T0298 280 :PTVVGDALGQDETYVGRVRAGQ 2b4rO 283 :EVVSQDFVHDNRSSIFDMKAGL T0298 302 :ADPCQVNLWIVSDNV 2b4rO 306 :LNDNFFKLVSWYDNE T0298 318 :KGAALNAVLLGELLI 2b4rO 321 :WGYSNRVLDLAVHIT Number of specific fragments extracted= 16 number of extra gaps= 1 total=150 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vm6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vm6A expands to /projects/compbio/data/pdb/1vm6.pdb.gz 1vm6A:# T0298 read from 1vm6A/merged-good-all-a2m # 1vm6A read from 1vm6A/merged-good-all-a2m # adding 1vm6A to template set # found chain 1vm6A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1vm6A)H0 T0298 5 :LNVAVVGATGSVGEALVGLLDERDFPLHR 1vm6A 1 :MKYGIVGYSGRMGQEIQKVFSEKGHELVL T0298 48 :GFAESSLRVGD 1vm6A 30 :KVDVNGVEELD T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1vm6A 41 :SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALK T0298 103 :S 1vm6A 77 :E T0298 113 :NAERLASQAAPFLLSSP 1vm6A 79 :HLQMLRELSKEVPVVQA T0298 130 :CAVAA 1vm6A 97 :NFSIG T0298 136 :LCEVLAPLLATL 1vm6A 102 :INVLKRFLSELV T0298 149 :CR 1vm6A 119 :WD T0298 151 :QLNLTA 1vm6A 122 :EIVETH T0298 181 :ARPLEPRLFD 1vm6A 128 :HRFKKDAPSG T0298 216 :IFAEVQALLG 1vm6A 138 :TAILLESALG T0298 254 :EPV 1vm6A 148 :KSV T0298 270 :GIEWVGEGDYP 1vm6A 151 :PIHSLRVGGVP T0298 283 :VGDALGQDETYVGRVRAGQ 1vm6A 165 :VVVFGNIGETIEIKHRAIS T0298 317 :RKGAALNAVLLGELLIK 1vm6A 184 :RTVFAIGALKAAEFLVG Number of specific fragments extracted= 15 number of extra gaps= 0 total=165 Number of alignments=10 # 1vm6A read from 1vm6A/merged-good-all-a2m # found chain 1vm6A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1vm6A)H0 T0298 5 :LNVAVVGATGSVGEALVGLLDERDF 1vm6A 1 :MKYGIVGYSGRMGQEIQKVFSEKGH T0298 33 :RLHLLASAESA 1vm6A 26 :ELVLKVDVNGV T0298 55 :RV 1vm6A 37 :EE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1vm6A 39 :LDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALK T0298 113 :NAERLASQAAPFLLSSPCAVAAELCEVLAPLLATL 1vm6A 79 :HLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELV T0298 148 :DCR 1vm6A 118 :DWD T0298 151 :QLNLTAC 1vm6A 122 :EIVETHH T0298 159 :SVSS 1vm6A 134 :APSG T0298 213 :ERRIFAEV 1vm6A 138 :TAILLESA T0298 224 :LGE 1vm6A 146 :LGK T0298 255 :PV 1vm6A 149 :SV T0298 270 :GIEWVGEGDYP 1vm6A 151 :PIHSLRVGGVP T0298 282 :VVGDALGQDETYVGRVRAGQ 1vm6A 164 :HVVVFGNIGETIEIKHRAIS T0298 317 :RKGAALNAVLLGELLIKHY 1vm6A 184 :RTVFAIGALKAAEFLVGKD Number of specific fragments extracted= 14 number of extra gaps= 0 total=179 Number of alignments=11 # 1vm6A read from 1vm6A/merged-good-all-a2m # found chain 1vm6A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1vm6A)H0 T0298 5 :LNVAVVGATGSVGEALVGLLDERDFPLHRLHL 1vm6A 1 :MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD T0298 51 :ESSLRVGD 1vm6A 33 :VNGVEELD T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVID 1vm6A 41 :SPDVVIDFSSPEALPKTVDLCKKYRAGLVL T0298 108 :VMVSVNAERLAS 1vm6A 71 :GTTALKEEHLQM T0298 140 :LAPLLATL 1vm6A 83 :LRELSKEV T0298 153 :NLTACLSVS 1vm6A 91 :PVVQAYNFS T0298 169 :KELARQTAEL 1vm6A 100 :IGINVLKRFL T0298 218 :AEVQALLGERIGPLNVTCI 1vm6A 110 :SELVKVLEDWDVEIVETHH T0298 261 :VTRVLDATKGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQA 1vm6A 142 :LESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAIS T0298 317 :RKGAALNAVLLGELLI 1vm6A 184 :RTVFAIGALKAAEFLV Number of specific fragments extracted= 10 number of extra gaps= 0 total=189 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b7gO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b7gO expands to /projects/compbio/data/pdb/1b7g.pdb.gz 1b7gO:# T0298 read from 1b7gO/merged-good-all-a2m # 1b7gO read from 1b7gO/merged-good-all-a2m # adding 1b7gO to template set # found chain 1b7gO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1b7gO)M1 Warning: unaligning (T0298)V67 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0298)G68 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0298 5 :LNVAVVG 1b7gO 2 :VNVAVNG T0298 13 :TGSVGEALVGLLDE 1b7gO 9 :YGTIGKRVADAIIK T0298 27 :RDFPLHRLHLLASAESAGQRMGFAESSLRVGDV 1b7gO 24 :PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQS T0298 60 :DSFDFSS 1b7gO 63 :SGIPVAG T0298 69 :LAFFAAAAEVSRAHAERARAAGCSVI 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAI T0298 96 :LSGALEPSVAPPVMV 1b7gO 106 :FQGGEKAEVADISFS T0298 111 :SVN 1b7gO 122 :LCN T0298 117 :LASQAAPFLLSSP 1b7gO 125 :YNEALGKKYIRVV T0298 130 :CAVAA 1b7gO 139 :CNTTA T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1b7gO 144 :LLRTICTVNKVSKVEKVRATIVRRAADQ T0298 180 :NARPLEPRLFDRQI 1b7gO 172 :KEVKKGPINSLVPD T0298 205 :DAEGHSAI 1b7gO 186 :PATVPSHH T0298 217 :FAEVQALL 1b7gO 194 :AKDVNSVI T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYP 1b7gO 202 :RNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDA T0298 283 :VGDALGQDETYVG 1b7gO 269 :KRDRNDIPEVMIF T0298 297 :VRAGQADPCQVNLWIVSDN 1b7gO 282 :SDSIYVKDDEVMLMYAVHQ T0298 317 :RKGAALNAVLLGELLIK 1b7gO 301 :ESIVVPENIDAIRASMK Number of specific fragments extracted= 17 number of extra gaps= 1 total=206 Number of alignments=13 # 1b7gO read from 1b7gO/merged-good-all-a2m # found chain 1b7gO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1b7gO)M1 Warning: unaligning (T0298)V67 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0298)G68 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0298 5 :LNVAVVGA 1b7gO 2 :VNVAVNGY T0298 14 :GSVGEALVGLLD 1b7gO 10 :GTIGKRVADAII T0298 28 :DFPLHRLHLLASAE 1b7gO 22 :KQPDMKLVGVAKTS T0298 42 :SAGQRMGFAESSLRVGDVDS 1b7gO 37 :NYEAFIAHRRGIRIYVPQQS T0298 62 :FDFSS 1b7gO 65 :IPVAG T0298 69 :LAFFAAAAEVSRAHAERARAAGCSVI 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAI T0298 96 :LSGALEPSVA 1b7gO 106 :FQGGEKAEVA T0298 106 :PPVMVSVNAERLA 1b7gO 117 :ISFSALCNYNEAL T0298 122 :APFLLSSP 1b7gO 130 :GKKYIRVV T0298 130 :CAVAA 1b7gO 139 :CNTTA T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLG 1b7gO 144 :LLRTICTVNKVSKVEKVRATIVRRAADQK T0298 166 :E 1b7gO 175 :K T0298 173 :RQTAELLNARPL 1b7gO 177 :GPINSLVPDPAT T0298 205 :DAEG 1b7gO 189 :VPSH T0298 213 :ERRIFAEV 1b7gO 193 :HAKDVNSV T0298 224 :LGE 1b7gO 201 :IRN T0298 229 :GPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDY 1b7gO 204 :LDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYD T0298 283 :VGDALGQDETYVG 1b7gO 269 :KRDRNDIPEVMIF T0298 297 :VRAGQADPCQVNLWIVSDN 1b7gO 282 :SDSIYVKDDEVMLMYAVHQ T0298 317 :RKGAALNAVLLGELLIK 1b7gO 301 :ESIVVPENIDAIRASMK Number of specific fragments extracted= 20 number of extra gaps= 1 total=226 Number of alignments=14 # 1b7gO read from 1b7gO/merged-good-all-a2m # found chain 1b7gO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1b7gO)M1 Warning: unaligning (T0298)V67 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0298)G68 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0298 5 :LNVAVVGA 1b7gO 2 :VNVAVNGY T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 1b7gO 10 :GTIGKRVADAIIKQPDMKLVGVAKTSPNYE T0298 44 :GQRMGFAES 1b7gO 47 :GIRIYVPQQ T0298 53 :SLRVGDVDSFDFSS 1b7gO 64 :GIPVAGTVEDLIKT T0298 69 :LAFFAAAAEVSRAHAERARAAGCSVID 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAIF T0298 97 :SGALEPSVAPPVMV 1b7gO 107 :QGGEKAEVADISFS T0298 116 :RLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSL 1b7gO 124 :NYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRRAADQ T0298 180 :NARPLEPRLFDRQ 1b7gO 172 :KEVKKGPINSLVP T0298 204 :VDAEGHSA 1b7gO 185 :DPATVPSH T0298 220 :VQALLG 1b7gO 193 :HAKDVN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPT 1b7gO 201 :IRNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAE T0298 284 :GDALGQ 1b7gO 268 :LKRDRN T0298 291 :ETYVGRVRA 1b7gO 274 :DIPEVMIFS T0298 300 :GQADPCQVNLWIVSDNVRK 1b7gO 285 :IYVKDDEVMLMYAVHQESI T0298 320 :AALNAVLLGEL 1b7gO 304 :VVPENIDAIRA Number of specific fragments extracted= 15 number of extra gaps= 1 total=241 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gadO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gadO expands to /projects/compbio/data/pdb/1gad.pdb.gz 1gadO:Skipped atom 1733, because occupancy 0.4 <= existing 0.600 in 1gadO Skipped atom 1735, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1737, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1739, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1741, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1743, because occupancy 0.400 <= existing 0.600 in 1gadO # T0298 read from 1gadO/merged-good-all-a2m # 1gadO read from 1gadO/merged-good-all-a2m # adding 1gadO to template set # found chain 1gadO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gadO)T0 T0298 5 :LNVAVVG 1gadO 1 :IKVGING T0298 13 :TGSVGEALVGLLDER 1gadO 8 :FGRIGRIVFRAAQKR T0298 28 :DFPLHRLHLLASAESAGQRMGFA 1gadO 24 :DIEIVAINDLLDADYMAYMLKYD T0298 51 :ESSLRVGDVDSFDFS 1gadO 71 :IRVTAERDPANLKWD T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1gadO 88 :GVDVVAEATGLFLTDETARKHITAGAKKV T0298 96 :LSGALEPSVAPPVMVSVNAERLA 1gadO 117 :VMTGPSKDNTPMFVKGANFDKYA T0298 122 :APFLLSSP 1gadO 138A:GQDIVSNA T0298 130 :CAVAA 1gadO 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1gadO 154 :LAPLAKVINDNFGIIEGLMTTVHATTAT T0298 176 :AELLNARPLEPRLFDRQIAFNLLA 1gadO 182 :QKTVDGPSHKDWRGGRGASQNIIP T0298 205 :DAEGHSAIERRIFAEVQA 1gadO 206 :SSTGAAKAVGKVLPELNG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gadO 224 :KLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1gadO 266 :EMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIAL T0298 304 :PCQVNLWIVSDN 1gadO 302 :DNFVKLVSWYDN T0298 317 :RKGAALNAVLLGELL 1gadO 314 :ETGYSNKVLDLIAHI Number of specific fragments extracted= 15 number of extra gaps= 0 total=256 Number of alignments=16 # 1gadO read from 1gadO/merged-good-all-a2m # found chain 1gadO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gadO)T0 T0298 5 :LNVAVVGA 1gadO 1 :IKVGINGF T0298 14 :GSVGEALVGLLD 1gadO 9 :GRIGRIVFRAAQ T0298 28 :DFPLHRLHLLASAESAGQRMGFAE 1gadO 21 :KRSDIEIVAINDLLDADYMAYMLK T0298 52 :SSLRVGDVDSFDFS 1gadO 72 :RVTAERDPANLKWD T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGAL 1gadO 88 :GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS T0298 103 :S 1gadO 122A:K T0298 104 :VAPPVMVSVNAERLA 1gadO 124 :NTPMFVKGANFDKYA T0298 122 :APFLLSSP 1gadO 138A:GQDIVSNA T0298 130 :CAVAA 1gadO 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 1gadO 154 :LAPLAKVINDNFGIIEGLMTTVHATTA T0298 175 :TAELLNARPLEPRLFDRQIAFNLLA 1gadO 181 :TQKTVDGPSHKDWRGGRGASQNIIP T0298 205 :DAEG 1gadO 206 :SSTG T0298 213 :ERRIFAEV 1gadO 210 :AAKAVGKV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gadO 218 :LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1gadO 266 :EMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGI T0298 302 :ADPCQVNLWIVSDN 1gadO 300 :LNDNFVKLVSWYDN T0298 317 :RKGAALNAVLLGEL 1gadO 314 :ETGYSNKVLDLIAH Number of specific fragments extracted= 17 number of extra gaps= 0 total=273 Number of alignments=17 # 1gadO read from 1gadO/merged-good-all-a2m # found chain 1gadO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gadO)T0 T0298 5 :LNVAVVGA 1gadO 1 :IKVGINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 1gadO 9 :GRIGRIVFRAAQKRSDIEIVAINDLLDADY T0298 45 :QRMGFAES 1gadO 55 :GTVEVKDG T0298 53 :SLRVGDVDSFDFS 1gadO 70 :KIRVTAERDPANL T0298 66 :SVGLAFFAAA 1gadO 88 :GVDVVAEATG T0298 76 :AEVSR 1gadO 102 :DETAR T0298 85 :RARAAGCSVIDLSGALE 1gadO 107 :KHITAGAKKVVMTGPSK T0298 103 :SVAPPVMVSV 1gadO 123 :DNTPMFVKGA T0298 116 :RLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 1gadO 133 :NFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKT T0298 180 :NARPLEPRLFDRQIAFNLLAQVGAVDAE 1gadO 186 :DGPSHKDWRGGRGASQNIIPSSTGAAKA T0298 220 :VQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gadO 214 :VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAA T0298 269 :KGIEWVGEGD 1gadO 268 :KGVLGYTEDD T0298 281 :TVVGDALGQDETYVGR 1gadO 278 :VVSTDFNGEVCTSVFD T0298 297 :VR 1gadO 297 :GI T0298 301 :QADPCQVNLWIVSDNVR 1gadO 299 :ALNDNFVKLVSWYDNET T0298 319 :GAALNAVLLGEL 1gadO 316 :GYSNKVLDLIAH Number of specific fragments extracted= 16 number of extra gaps= 0 total=289 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1crwG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1crwG expands to /projects/compbio/data/pdb/1crw.pdb.gz 1crwG:# T0298 read from 1crwG/merged-good-all-a2m # 1crwG read from 1crwG/merged-good-all-a2m # adding 1crwG to template set # found chain 1crwG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1crwG)S1 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1crwG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)I203 T0298 6 :NVAVVG 1crwG 2 :KIGING T0298 13 :TGSVGEALVGLLDERDFPLHRLHL 1crwG 8 :FGRIGRLVLRAALEMGAQVVAVND T0298 37 :LASAESAGQRMGFA 1crwG 34 :FIALEYMVYMFKYD T0298 51 :ESSLRVGDVDSFDFS 1crwG 71 :ITVFNEMKPENIPWS T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1crwG 88 :GAEYIVESTGVFTTIEKASAHFKGGAKKV T0298 96 :LSGALE 1crwG 117 :IISAPS T0298 103 :SVAPPVMVSVNAERLAS 1crwG 123 :ADAPMFVCGVNLEKYSK T0298 122 :APFLLSSP 1crwG 140 :DMKVVSNA T0298 130 :CAVAA 1crwG 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1crwG 154 :LAPVAKVLHENFEIVEGLMTTVHAVTAT T0298 176 :AELLNARPLEPRLFDRQIA 1crwG 182 :QKTVDGPSAKDWRGGRGAA T0298 198 :LA 1crwG 204 :IP T0298 205 :DAEGHSAIERRIFAEVQA 1crwG 206 :SSTGAAKAVGKVIPELDG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1crwG 224 :KLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1crwG 266 :PLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQL T0298 304 :PCQVNLWIVSDN 1crwG 302 :KTFVKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKH 1crwG 314 :EFGYSQRVIDLIKHMQKV Number of specific fragments extracted= 17 number of extra gaps= 1 total=306 Number of alignments=19 # 1crwG read from 1crwG/merged-good-all-a2m # found chain 1crwG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1crwG)S1 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1crwG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)I203 T0298 6 :NVAVVGA 1crwG 2 :KIGINGF T0298 14 :GSVGEALVGLLDERDFP 1crwG 9 :GRIGRLVLRAALEMGAQ T0298 34 :LHLLASAE 1crwG 27 :VVAVNDPF T0298 42 :SAGQRMGFAE 1crwG 36 :ALEYMVYMFK T0298 52 :SSLRVGDVDSFDFS 1crwG 72 :TVFNEMKPENIPWS T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGA 1crwG 88 :GAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP T0298 102 :PSVAPPVMVSVNAERLAS 1crwG 122 :SADAPMFVCGVNLEKYSK T0298 122 :APFLLSSP 1crwG 140 :DMKVVSNA T0298 130 :CAVAA 1crwG 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 1crwG 154 :LAPVAKVLHENFEIVEGLMTTVHAVTA T0298 175 :TAELLNARPLEPRLFDRQIA 1crwG 181 :TQKTVDGPSAKDWRGGRGAA T0298 198 :LA 1crwG 204 :IP T0298 205 :DAEG 1crwG 206 :SSTG T0298 213 :ERRIFAEV 1crwG 210 :AAKAVGKV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1crwG 218 :IPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1crwG 266 :PLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGI T0298 302 :ADPCQVNLWIVSDN 1crwG 300 :LSKTFVKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKHY 1crwG 314 :EFGYSQRVIDLIKHMQKVD Number of specific fragments extracted= 18 number of extra gaps= 1 total=324 Number of alignments=20 # 1crwG read from 1crwG/merged-good-all-a2m # found chain 1crwG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1crwG)S1 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1crwG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1crwG)I203 T0298 6 :NVAVVGA 1crwG 2 :KIGINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 1crwG 9 :GRIGRLVLRAALEMGAQVVAVNDPFIALEY T0298 44 :GQRMGFAES 1crwG 54 :KGEVKAEDG T0298 53 :SLRVGDVD 1crwG 70 :KITVFNEM T0298 61 :SFDFSSVGLAFFAAA 1crwG 83 :PWSKAGAEYIVESTG T0298 76 :AEVSR 1crwG 102 :IEKAS T0298 87 :RAAGCSVIDLSGAL 1crwG 109 :FKGGAKKVIISAPS T0298 103 :SVAPPVMVSVNAERL 1crwG 123 :ADAPMFVCGVNLEKY T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 1crwG 139 :KDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT T0298 180 :NARPLEPRLFDRQIA 1crwG 186 :DGPSAKDWRGGRGAA T0298 198 :LAQVGA 1crwG 204 :IPSSTG T0298 216 :IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1crwG 210 :AAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGD 1crwG 268 :QGVLGYTEDD T0298 281 :TVVGDALGQDETYVGR 1crwG 278 :VVSCDFTGDNRSSIFD T0298 299 :AGQADPCQVNLWIVSDNV 1crwG 297 :GIQLSKTFVKVVSWYDNE T0298 318 :KGAALNAVLLGELLIKH 1crwG 315 :FGYSQRVIDLIKHMQKV Number of specific fragments extracted= 16 number of extra gaps= 1 total=340 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i32A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1i32A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1i32A/merged-good-all-a2m.gz for input Trying 1i32A/merged-good-all-a2m Error: Couldn't open file 1i32A/merged-good-all-a2m or 1i32A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t4bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0298 read from 1t4bA/merged-good-all-a2m # 1t4bA read from 1t4bA/merged-good-all-a2m # found chain 1t4bA in training set Warning: unaligning (T0298)P4 because first residue in template chain is (1t4bA)M1 T0298 5 :LNVAVVGATGSVGEALVGLLDERD 1t4bA 2 :QNVGFIGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD 1t4bA 27 :FDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGC 1t4bA 63 :LKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEP 1t4bA 93 :YWIDAASSLRM T0298 103 :SVAPPVMVSVNAERLA 1t4bA 105 :DDAIIILDPVNQDVIT T0298 119 :SQ 1t4bA 125 :NG T0298 122 :APFLLSSPCAVAA 1t4bA 127 :IRTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAEL 1t4bA 140 :MLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHL T0298 179 :LNARPL 1t4bA 190 :LATPSS T0298 185 :EPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1t4bA 214 :PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1t4bA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH T0298 269 :KGIEWVGE 1t4bA 300 :PWAKVVPN T0298 283 :VGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1t4bA 318 :PAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 13 number of extra gaps= 0 total=353 Number of alignments=22 # 1t4bA read from 1t4bA/merged-good-all-a2m # found chain 1t4bA in training set T0298 5 :LNVAVVGATGSVGEALVGLLDERD 1t4bA 2 :QNVGFIGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLL 1t4bA 27 :FDAIRPVFF T0298 39 :SAESAGQRM 1t4bA 36 :STSQLGQAA T0298 48 :GFAESSLRVGDVDSFD 1t4bA 46 :SFGGTTGTLQDAFDLE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGC 1t4bA 63 :LKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEPS 1t4bA 93 :YWIDAASSLRMK T0298 104 :VAPPVMVSVNAERLA 1t4bA 106 :DAIIILDPVNQDVIT T0298 119 :SQAAPFLLSSPCAVAA 1t4bA 124 :NNGIRTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 1t4bA 140 :MLMSLGGLFANDLVDWVSVATYQAASGGGARHMREL T0298 172 :ARQTAELLNARPLEPRL 1t4bA 183 :YGHVADELATPSSAILD T0298 189 :FDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1t4bA 218 :FGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1t4bA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH T0298 269 :KGIEWVGE 1t4bA 300 :PWAKVVPN T0298 284 :GDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1t4bA 319 :AAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 14 number of extra gaps= 0 total=367 Number of alignments=23 # 1t4bA read from 1t4bA/merged-good-all-a2m # found chain 1t4bA in training set T0298 5 :LNVAVVGATGSVGEALVGLLDERDFPLH 1t4bA 2 :QNVGFIGWRGMVGSVLMQRMVEERDFDA T0298 33 :RLHLLASAESAGQRMGFAESSLRVGDV 1t4bA 31 :RPVFFSTSQLGQAAPSFGGTTGTLQDA T0298 60 :DSFDFSSVGLAFFAAAAEVSRAHAERARAAGC 1t4bA 59 :DLEALKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEPS 1t4bA 93 :YWIDAASSLRMK T0298 104 :VAPPVMVSVNAERLASQ 1t4bA 106 :DAIIILDPVNQDVITDG T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAEL 1t4bA 125 :NGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHL T0298 179 :LNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1t4bA 208 :TRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG 1t4bA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN T0298 281 :TVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1t4bA 316 :LTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 9 number of extra gaps= 0 total=376 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ywgO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1ywgO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1ywgO/merged-good-all-a2m.gz for input Trying 1ywgO/merged-good-all-a2m Error: Couldn't open file 1ywgO/merged-good-all-a2m or 1ywgO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rm4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rm4A expands to /projects/compbio/data/pdb/1rm4.pdb.gz 1rm4A:Skipped atom 3025, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3027, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3029, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3031, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3182, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3184, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3186, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3188, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3190, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3192, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 3194, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 4114, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 4116, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 4745, because occupancy 0.500 <= existing 0.500 in 1rm4A Skipped atom 4747, because occupancy 0.500 <= existing 0.500 in 1rm4A # T0298 read from 1rm4A/merged-good-all-a2m # 1rm4A read from 1rm4A/merged-good-all-a2m # adding 1rm4A to template set # found chain 1rm4A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1rm4A)K0 T0298 5 :LNVAVVG 1rm4A 1 :LKVAING T0298 13 :TGSVGEALVGLLDERD 1rm4A 8 :FGRIGRNFLRCWHGRK T0298 29 :FPLHRLHLLASAESAGQRMGFA 1rm4A 25 :LDVVVINDTGGVKQASHLLKYD T0298 51 :ESSLRVGDVDSFDFS 1rm4A 71 :IKVVSDRNPVNLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1rm4A 88 :GIDLVIEGTGVFVDRDGAGKHLQAGAKKV T0298 96 :LSGALEPSVAPPVMVSVNAERLAS 1rm4A 117 :LITAPGKGDIPTYVVGVNEEGYTH T0298 122 :APFLLSSP 1rm4A 140 :ADTIISNA T0298 130 :CAVAA 1rm4A 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1rm4A 154 :LAPFVKVLDQKFGIIKGTMTTTHSYTGD T0298 176 :AELLNARP 1rm4A 182 :QRLLDASH T0298 185 :EPRLFDRQIAFNLLA 1rm4A 191 :RDLRRARAACLNIVP T0298 205 :DAEGHSAIERRIFAEVQA 1rm4A 206 :TSTGAAKAVALVLPNLKG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1rm4A 224 :KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1rm4A 266 :ELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVM T0298 304 :PCQVNLWIVSDN 1rm4A 302 :DDMVKVIAWYDN T0298 317 :RKGAALNAVLLGELLIKHYL 1rm4A 314 :EWGYSQRVVDLADIVANKWQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=392 Number of alignments=25 # 1rm4A read from 1rm4A/merged-good-all-a2m # found chain 1rm4A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1rm4A)K0 T0298 5 :LNVAVVGA 1rm4A 1 :LKVAINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE 1rm4A 9 :GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLK T0298 52 :SSLRVGDVDSFDFS 1rm4A 72 :KVVSDRNPVNLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1rm4A 88 :GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK T0298 103 :SVAPPVMVSVNAERLAS 1rm4A 123 :GDIPTYVVGVNEEGYTH T0298 122 :APFLLSSP 1rm4A 140 :ADTIISNA T0298 130 :CAVAA 1rm4A 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1rm4A 154 :LAPFVKVLDQKFGIIKGTMTTTHSYTGD T0298 176 :AELLNARPLEPRL 1rm4A 182 :QRLLDASHRDLRR T0298 190 :DRQIAFNLLA 1rm4A 196 :ARAACLNIVP T0298 205 :DAEG 1rm4A 206 :TSTG T0298 213 :ERRIFAEV 1rm4A 210 :AAKAVALV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1rm4A 218 :LPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1rm4A 266 :ELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTM T0298 302 :ADPCQVNLWIVSDN 1rm4A 300 :MGDDMVKVIAWYDN T0298 317 :RKGAALNAVLLGELLIKHY 1rm4A 314 :EWGYSQRVVDLADIVANKW Number of specific fragments extracted= 16 number of extra gaps= 0 total=408 Number of alignments=26 # 1rm4A read from 1rm4A/merged-good-all-a2m # found chain 1rm4A in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1rm4A)K0 T0298 5 :LNVAVVGA 1rm4A 1 :LKVAINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 1rm4A 9 :GRIGRNFLRCWHGRKDSPLDVVVINDTGGV T0298 44 :GQRMGFAESSLRVGDVDSFDFSS 1rm4A 61 :DSAISVDGKVIKVVSDRNPVNLP T0298 67 :VGLAFFAAA 1rm4A 89 :IDLVIEGTG T0298 80 :RAHAERARAAGCSVIDLSGALE 1rm4A 102 :RDGAGKHLQAGAKKVLITAPGK T0298 104 :VAPPVMVSVNAERLA 1rm4A 124 :DIPTYVVGVNEEGYT T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSL 1rm4A 139 :HADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD T0298 181 :ARPLEPRLFDRQIA 1rm4A 182 :QRLLDASHRDLRRA T0298 195 :FNLLAQVGA 1rm4A 201 :LNIVPTSTG T0298 216 :IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKG 1rm4A 210 :AAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD T0298 271 :IEWVGE 1rm4A 271 :LSVCDE T0298 280 :PTVVGDALGQDETYVGRVRAGQ 1rm4A 277 :PLVSIDFRCTDVSSTIDSSLTM T0298 302 :ADPCQVNLWIVSDNV 1rm4A 300 :MGDDMVKVIAWYDNE T0298 318 :KGAALNAVLLGELLIKHY 1rm4A 315 :WGYSQRVVDLADIVANKW Number of specific fragments extracted= 14 number of extra gaps= 0 total=422 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1drw/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1drw expands to /projects/compbio/data/pdb/1drw.pdb.gz 1drw:Warning: there is no chain 1drw will retry with 1drwA # T0298 read from 1drw/merged-good-all-a2m # 1drw read from 1drw/merged-good-all-a2m # adding 1drw to template set # found chain 1drw in template set Warning: unaligning (T0298)V10 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0298)G11 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0298)Q45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)L52 Warning: unaligning (T0298)R46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)L52 Warning: unaligning (T0298)F71 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0298)F72 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0298)R150 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0298)Q151 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0298)D278 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0298)T292 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 T0298 3 :QPLNVAV 1drw 4 :ANIRVAI T0298 12 :ATGSVGEALVGLLD 1drw 13 :AGGRMGRQLIQAAL T0298 28 :DFPLHRLHLLASAES 1drw 27 :ALEGVQLGAALEREG T0298 43 :AG 1drw 49 :AG T0298 47 :MGFAESSLRVGD 1drw 53 :AGAGKTGVTVQS T0298 64 :FSSVGLA 1drw 70 :KDDFDVF T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 114 :AERLASQAAPFLLSSPCAVAAELCEVLAPLLATL 1drw 111 :KQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAA T0298 148 :DC 1drw 149 :DY T0298 152 :LNLTACL 1drw 153 :IEIIEAH T0298 159 :SVSSLGREGVKELARQT 1drw 166 :APSGTALAMGEAIAHAL T0298 177 :E 1drw 188 :D T0298 178 :LLNARPLE 1drw 190 :AVYSREGH T0298 205 :DAEGH 1drw 198 :TGERV T0298 227 :RI 1drw 203 :PG T0298 230 :PLNVTCIQ 1drw 205 :TIGFATVR T0298 243 :GDSLSVTLQ 1drw 217 :VGEHTAMFA T0298 275 :GEG 1drw 226 :DIG T0298 293 :YVGRVRAGQ 1drw 231 :LEITHKASS T0298 317 :RKGAALNAVLLGELLIK 1drw 240 :RMTFANGAVRSALWLSG Number of specific fragments extracted= 20 number of extra gaps= 5 total=442 Number of alignments=28 # 1drw read from 1drw/merged-good-all-a2m # found chain 1drw in template set Warning: unaligning (T0298)V10 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0298)G11 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0298)G48 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D48 Warning: unaligning (T0298)F49 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D48 Warning: unaligning (T0298)F71 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0298)F72 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0298)R150 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0298)Q151 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0298)E291 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0298)T292 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 T0298 4 :PLNVAV 1drw 5 :NIRVAI T0298 12 :ATGSVGEALVGLLD 1drw 13 :AGGRMGRQLIQAAL T0298 28 :DFPLHRLHLLASAESAGQRM 1drw 27 :ALEGVQLGAALEREGSSLLG T0298 50 :AE 1drw 49 :AG T0298 52 :SSLRVGDVDSF 1drw 59 :GVTVQSSLDAV T0298 64 :FSSVGLA 1drw 70 :KDDFDVF T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 113 :NAERLASQAAPFLLSSPCAVAAELCEVLAPLLA 1drw 110 :GKQAIRDAAADIAIVFAANFSVGVNVMLKLLEK T0298 146 :TLDC 1drw 147 :MGDY T0298 152 :LNLTACL 1drw 153 :IEIIEAH T0298 159 :SVSSLGREGVKELARQ 1drw 166 :APSGTALAMGEAIAHA T0298 182 :RPLEPRL 1drw 182 :LDKDLKD T0298 196 :NLLAQVGAVDAEG 1drw 189 :CAVYSREGHTGER T0298 224 :L 1drw 202 :V T0298 228 :IGPLNVTCIQ 1drw 203 :PGTIGFATVR T0298 243 :GDSLSVTLQ 1drw 217 :VGEHTAMFA T0298 288 :GQD 1drw 226 :DIG T0298 293 :YVGRVRAGQ 1drw 231 :LEITHKASS T0298 317 :RKGAALNAVLLGELLIK 1drw 240 :RMTFANGAVRSALWLSG Number of specific fragments extracted= 19 number of extra gaps= 5 total=461 Number of alignments=29 # 1drw read from 1drw/merged-good-all-a2m # found chain 1drw in template set Warning: unaligning (T0298)S2 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1drw)D3 Warning: unaligning (T0298)V10 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0298)G11 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0298)Q45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)L52 Warning: unaligning (T0298)R46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)L52 Warning: unaligning (T0298)F71 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0298)F72 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0298)R150 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0298)Q151 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0298)Y279 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0298)P280 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 T0298 3 :QPLNVAV 1drw 4 :ANIRVAI T0298 12 :ATGSVGEALVGLLDERDFPLHRLHLLASAESA 1drw 13 :AGGRMGRQLIQAALALEGVQLGAALEREGSSL T0298 44 :G 1drw 50 :G T0298 47 :MGFAESSLRVGDVDSFDFSSVGLA 1drw 53 :AGAGKTGVTVQSSLDAVKDDFDVF T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 113 :NAERLASQAAPFLLSSPCAVAAELCEVLAPLLA 1drw 110 :GKQAIRDAAADIAIVFAANFSVGVNVMLKLLEK T0298 146 :TLDC 1drw 147 :MGDY T0298 152 :LNLTACL 1drw 153 :IEIIEAH T0298 162 :SLGREGVKELARQTAEL 1drw 165 :DAPSGTALAMGEAIAHA T0298 179 :LNARPLEPRLF 1drw 192 :YSREGHTGERV T0298 228 :IGPLNVTCIQ 1drw 203 :PGTIGFATVR T0298 244 :DSLSVTLQ 1drw 218 :GEHTAMFA T0298 276 :EGD 1drw 226 :DIG T0298 281 :TV 1drw 231 :LE T0298 295 :GRV 1drw 233 :ITH T0298 299 :AGQA 1drw 236 :KASS T0298 317 :RKGAALNAVLLGELL 1drw 240 :RMTFANGAVRSALWL Number of specific fragments extracted= 17 number of extra gaps= 6 total=478 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1obfO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0298 read from 1obfO/merged-good-all-a2m # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0298)P4 because first residue in template chain is (1obfO)T1 Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)V134 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)V134 Warning: unaligning (T0298)A131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obfO)T155 Warning: unaligning (T0298)L154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0298)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)H181 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)M207 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)M207 T0298 5 :LNVAVVG 1obfO 2 :IRVAING T0298 13 :TGSVGEALVGLLDER 1obfO 9 :YGRIGRNILRAHYEG T0298 28 :DFPLHRLHLLASAESAGQRMGFA 1obfO 28 :DIEIVAINDLGDPKTNAHLTRYD T0298 51 :ESSLRVGDVDSFDFS 1obfO 74 :IRVDANRNPAQLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1obfO 91 :KVDVVLECTGFFTTKEKAGAHIKGGAKKV T0298 96 :LSGALEPSVA 1obfO 120 :IISAPGGADV T0298 106 :PP 1obfO 131 :AT T0298 110 :VSVNAERLAS 1obfO 135 :YGVNHGTLKS T0298 122 :APFLLSSP 1obfO 145 :TDTVISNA T0298 132 :VAA 1obfO 156 :TNC T0298 136 :LCEVLAPLLATLDCRQLN 1obfO 159 :LAPLVKPLNDKLGLQDGL T0298 156 :A 1obfO 179 :T T0298 159 :SVSSL 1obfO 182 :AYTNN T0298 176 :AELLNARP 1obfO 187 :QVLTDVYH T0298 185 :EPRLFDRQIAF 1obfO 195 :EDLRRARSATM T0298 198 :LA 1obfO 208 :IP T0298 205 :DAEGHSAIERRIFAEVQA 1obfO 210 :TKTGAAAAVGDVLPELDG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1obfO 228 :KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDN 1obfO 270 :ELKGILDYNTEPLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYDN T0298 317 :RKGAALNAVLLGELLIK 1obfO 317 :EWGFSNRMLDTTVALMS Number of specific fragments extracted= 20 number of extra gaps= 4 total=498 Number of alignments=31 # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0298)P4 because first residue in template chain is (1obfO)T1 Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)V134 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)V134 Warning: unaligning (T0298)A131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obfO)T155 Warning: unaligning (T0298)L154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0298)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)H181 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)M207 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)M207 T0298 5 :LNVAVVGA 1obfO 2 :IRVAINGY T0298 14 :GSVGEALVGLLDERDFP 1obfO 10 :GRIGRNILRAHYEGGKS T0298 31 :LHRLHLLASAESAGQRMGFAE 1obfO 28 :DIEIVAINDLGDPKTNAHLTR T0298 52 :SSLRVGDVDSFDFS 1obfO 75 :RVDANRNPAQLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPS 1obfO 91 :KVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGAD T0298 104 :V 1obfO 130 :D T0298 106 :PP 1obfO 131 :AT T0298 110 :VSVNAERLAS 1obfO 135 :YGVNHGTLKS T0298 122 :APFLLSSP 1obfO 145 :TDTVISNA T0298 132 :VAA 1obfO 156 :TNC T0298 136 :LCEVLAPLLATLDCRQLN 1obfO 159 :LAPLVKPLNDKLGLQDGL T0298 156 :A 1obfO 179 :T T0298 159 :SVSS 1obfO 182 :AYTN T0298 177 :ELL 1obfO 186 :NQV T0298 180 :NARPLEPRL 1obfO 191 :DVYHEDLRR T0298 190 :DRQIAF 1obfO 200 :ARSATM T0298 198 :LA 1obfO 208 :IP T0298 205 :DAEG 1obfO 210 :TKTG T0298 213 :ERRIFAEV 1obfO 214 :AAAAVGDV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1obfO 222 :LPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDN 1obfO 270 :ELKGILDYNTEPLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYDN T0298 317 :RKGAALNAVLLGELLIK 1obfO 317 :EWGFSNRMLDTTVALMS Number of specific fragments extracted= 22 number of extra gaps= 4 total=520 Number of alignments=32 # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0298)P4 because first residue in template chain is (1obfO)T1 Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)V134 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)V134 Warning: unaligning (T0298)C130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obfO)T155 Warning: unaligning (T0298)V132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obfO)T155 Warning: unaligning (T0298)L154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0298)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)H181 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)M207 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)M207 T0298 5 :LNVAVVGA 1obfO 2 :IRVAINGY T0298 14 :GSVGEALVGLLDERDFPLHRLHLLA 1obfO 10 :GRIGRNILRAHYEGGKSHDIEIVAI T0298 39 :SAESA 1obfO 36 :DLGDP T0298 44 :GQRMGFAES 1obfO 57 :PGTVSVNGS T0298 53 :SLRVGDVDSFDFS 1obfO 73 :KIRVDANRNPAQL T0298 67 :VGLAFFAAA 1obfO 92 :VDVVLECTG T0298 80 :RAHAERARAAGCSVIDLSGALEPSVAPP 1obfO 105 :KEKAGAHIKGGAKKVIISAPGGADVDAT T0298 110 :VSVNAERLA 1obfO 135 :YGVNHGTLK T0298 121 :AAPFLLSSP 1obfO 144 :STDTVISNA T0298 133 :AAELCEVLAPLLATLDCRQLN 1obfO 156 :TNCLAPLVKPLNDKLGLQDGL T0298 156 :A 1obfO 179 :T T0298 159 :SVSSLGRE 1obfO 182 :AYTNNQVL T0298 180 :NARPLEPRLFDRQIAF 1obfO 190 :TDVYHEDLRRARSATM T0298 198 :LAQVGA 1obfO 208 :IPTKTG T0298 216 :IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1obfO 214 :AAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAA T0298 269 :KGIEWVGEG 1obfO 272 :KGILDYNTE T0298 280 :PTVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNV 1obfO 281 :PLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYDNE T0298 318 :KGAALNAVLLGELLIK 1obfO 318 :WGFSNRMLDTTVALMS Number of specific fragments extracted= 18 number of extra gaps= 4 total=538 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nwhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1nwhA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1nwhA/merged-good-all-a2m.gz for input Trying 1nwhA/merged-good-all-a2m Error: Couldn't open file 1nwhA/merged-good-all-a2m or 1nwhA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nptO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1nptO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1nptO/merged-good-all-a2m.gz for input Trying 1nptO/merged-good-all-a2m Error: Couldn't open file 1nptO/merged-good-all-a2m or 1nptO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1arzC/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1arzC expands to /projects/compbio/data/pdb/1arz.pdb.gz 1arzC:# T0298 read from 1arzC/merged-good-all-a2m # 1arzC read from 1arzC/merged-good-all-a2m # adding 1arzC to template set # found chain 1arzC in template set Warning: unaligning (T0298)S2 because first residue in template chain is (1arzC)D3 T0298 3 :QPLNVAVVGATGSVGEALVGLLD 1arzC 4 :ANIRVAIAGAGGRMGRQLIQAAL T0298 28 :DFPLHRLHLLA 1arzC 27 :ALEGVQLGAAL T0298 39 :SAES 1arzC 41 :GSSL T0298 43 :AGQRMGFAESSLRVGD 1arzC 49 :AGELAGAGKTGVTVQS T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1arzC 70 :KDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 114 :AERLASQAAPFLLSSPCAVAAELCEVLAPLLATL 1arzC 111 :KQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAA T0298 148 :DCR 1arzC 150 :YTD T0298 151 :QLNLTAC 1arzC 154 :EIIEAHH T0298 158 :LSVSSLGREGVKELARQTAE 1arzC 165 :DAPSGTALAMGEAIAHALDK T0298 178 :LLNARPLEPRLF 1arzC 190 :AVYSREGHTGER T0298 205 :DA 1arzC 202 :VP T0298 228 :I 1arzC 204 :G T0298 230 :PLNVTCIQ 1arzC 205 :TIGFATVR T0298 241 :FF 1arzC 216 :IV T0298 246 :LSVTLQCAE 1arzC 218 :GEHTAMFAD T0298 289 :QDETYVGRVRAGQ 1arzC 227 :IGERLEITHKASS T0298 317 :RKGAALNAVLLGELL 1arzC 240 :RMTFANGAVRSALWL Number of specific fragments extracted= 17 number of extra gaps= 0 total=555 Number of alignments=34 # 1arzC read from 1arzC/merged-good-all-a2m # found chain 1arzC in template set Warning: unaligning (T0298)S2 because first residue in template chain is (1arzC)D3 T0298 3 :QPLNVAVVGATGSVGEALVGLLD 1arzC 4 :ANIRVAIAGAGGRMGRQLIQAAL T0298 28 :DFPLHRLHLLASAE 1arzC 27 :ALEGVQLGAALERE T0298 42 :SAGQRMGFAESSLR 1arzC 44 :LLGSDAGELAGAGK T0298 56 :VGDVDSFD 1arzC 63 :QSSLDAVK T0298 65 :SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1arzC 71 :DDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 113 :NAERLASQAAPFLLSSPCAVAAELCEVLAPLLA 1arzC 110 :GKQAIRDAAADIAIVFAANFSVGVNVMLKLLEK T0298 146 :TLDCR 1arzC 148 :GDYTD T0298 151 :QLNLTA 1arzC 154 :EIIEAH T0298 159 :SVSSLGREGVKELARQT 1arzC 166 :APSGTALAMGEAIAHAL T0298 183 :PLEPRL 1arzC 183 :DKDLKD T0298 196 :NLLAQVGAVDAEG 1arzC 189 :CAVYSREGHTGER T0298 224 :LGE 1arzC 202 :VPG T0298 230 :PLNVTCIQ 1arzC 205 :TIGFATVR T0298 277 :G 1arzC 214 :G T0298 290 :DETYVGRVRAGQ 1arzC 215 :DIVGEHTAMFAD T0298 303 :DPCQVNLWIVSDN 1arzC 227 :IGERLEITHKASS T0298 317 :RKGAALNAVLLGELL 1arzC 240 :RMTFANGAVRSALWL Number of specific fragments extracted= 17 number of extra gaps= 0 total=572 Number of alignments=35 # 1arzC read from 1arzC/merged-good-all-a2m # found chain 1arzC in template set Warning: unaligning (T0298)S2 because first residue in template chain is (1arzC)D3 T0298 3 :QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA 1arzC 4 :ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL T0298 44 :GQR 1arzC 46 :GSD T0298 47 :MGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDL 1arzC 53 :AGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG T0298 109 :MVSVNAERLASQ 1arzC 103 :TTGFDEAGKQAI T0298 121 :AAPFLLSSPCAV 1arzC 119 :ADIAIVFAANFS T0298 134 :AELCEVLAPLLA 1arzC 131 :VGVNVMLKLLEK T0298 146 :TLDCRQLNLTACL 1arzC 147 :MGDYTDIEIIEAH T0298 159 :SV 1arzC 166 :AP T0298 165 :REGVKELARQTAELLNAR 1arzC 168 :SGTALAMGEAIAHALDKD T0298 183 :PLEPRLFDRQ 1arzC 196 :GHTGERVPGT T0298 231 :LNVTCIQ 1arzC 206 :IGFATVR T0298 244 :DSLSVTLQCA 1arzC 216 :IVGEHTAMFA T0298 288 :GQDETYVGRVRAGQ 1arzC 226 :DIGERLEITHKASS T0298 317 :RKGAALNAVLLGEL 1arzC 240 :RMTFANGAVRSALW Number of specific fragments extracted= 14 number of extra gaps= 0 total=586 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gd1O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gd1O expands to /projects/compbio/data/pdb/1gd1.pdb.gz 1gd1O:# T0298 read from 1gd1O/merged-good-all-a2m # 1gd1O read from 1gd1O/merged-good-all-a2m # adding 1gd1O to template set # found chain 1gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gd1O)A0 Warning: unaligning (T0298)P30 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0298)L31 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0298)R55 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0298)V56 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 Warning: unaligning (T0298)V110 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)G131 Warning: unaligning (T0298)S111 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)G131 Warning: unaligning (T0298)N196 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)I203 Warning: unaligning (T0298)L197 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)I203 Warning: unaligning (T0298)I216 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)L218 Warning: unaligning (T0298)F217 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)L218 T0298 5 :LNVAVVG 1gd1O 1 :VKVGING T0298 13 :TGSVGEALVGLLD 1gd1O 8 :FGRIGRNVFRAAL T0298 28 :DF 1gd1O 21 :KN T0298 32 :HRLHLL 1gd1O 25 :IEVVAV T0298 38 :ASAESAGQRMGFA 1gd1O 34 :TDANTLAHLLKYD T0298 51 :ESSL 1gd1O 71 :IIVK T0298 57 :GDVDSFDFS 1gd1O 77 :RDPENLAWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAGAKKV T0298 96 :LSGALEPSVAPPVM 1gd1O 117 :IISAPAKNEDITIV T0298 112 :VNAERLASQ 1gd1O 132 :VNQDKYDPK T0298 122 :APFLLSSP 1gd1O 140 :AHHVISNA T0298 130 :CAVAA 1gd1O 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1gd1O 154 :LAPFAKVLHEQFGIVRGMMTTVHSYTND T0298 176 :AELLNARP 1gd1O 182 :QRILDLPH T0298 185 :EPRLFDRQIAF 1gd1O 191 :KDLRRARAAAE T0298 198 :LA 1gd1O 204 :IP T0298 205 :DAEGHSAIERR 1gd1O 206 :TTTGAAKAVAL T0298 218 :AEVQA 1gd1O 219 :PELKG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gd1O 224 :KLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1gd1O 266 :ELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVI T0298 304 :PCQVNLWIVSDN 1gd1O 302 :GKMVKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKHYL 1gd1O 314 :ETGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 22 number of extra gaps= 5 total=608 Number of alignments=37 # 1gd1O read from 1gd1O/merged-good-all-a2m # found chain 1gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gd1O)A0 Warning: unaligning (T0298)P30 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0298)L31 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0298)R55 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0298)V56 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 Warning: unaligning (T0298)V110 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)G131 Warning: unaligning (T0298)S111 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)G131 Warning: unaligning (T0298)N196 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)I203 Warning: unaligning (T0298)L197 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)I203 Warning: unaligning (T0298)L223 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)L218 Warning: unaligning (T0298)L224 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)L218 T0298 5 :LNVAVVGA 1gd1O 1 :VKVGINGF T0298 14 :GSVGEALVGLLD 1gd1O 9 :GRIGRNVFRAAL T0298 28 :DF 1gd1O 21 :KN T0298 32 :HRLHLLASAESAGQRMGFAE 1gd1O 25 :IEVVAVNDLTDANTLAHLLK T0298 52 :SSL 1gd1O 72 :IVK T0298 57 :GDVDSFDFS 1gd1O 77 :RDPENLAWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSV 1gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNED T0298 106 :PPVM 1gd1O 126 :ITIV T0298 112 :VNAERLASQ 1gd1O 132 :VNQDKYDPK T0298 122 :APFLLSSP 1gd1O 140 :AHHVISNA T0298 130 :CAVAA 1gd1O 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 1gd1O 154 :LAPFAKVLHEQFGIVRGMMTTVHSYTN T0298 177 :ELL 1gd1O 181 :DQR T0298 180 :NARPLEPRL 1gd1O 186 :DLPHKDLRR T0298 190 :DRQIAF 1gd1O 196 :ARAAAE T0298 198 :LAQVGAVDAE 1gd1O 204 :IPTTTGAAKA T0298 220 :VQA 1gd1O 214 :VAL T0298 225 :GERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gd1O 219 :PELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1gd1O 266 :ELKGILAYSEEPLVSRDYNGSTVSSTIDALSTM T0298 302 :ADPCQVNLWIVSDN 1gd1O 300 :IDGKMVKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKHYL 1gd1O 314 :ETGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 21 number of extra gaps= 5 total=629 Number of alignments=38 # 1gd1O read from 1gd1O/merged-good-all-a2m # found chain 1gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1gd1O)A0 Warning: unaligning (T0298)D28 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0298)F29 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0298)D58 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0298)V59 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 Warning: unaligning (T0298)V110 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)G131 Warning: unaligning (T0298)S111 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)G131 Warning: unaligning (T0298)R187 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)I203 Warning: unaligning (T0298)L188 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)I203 Warning: unaligning (T0298)V201 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)L218 Warning: unaligning (T0298)G202 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)L218 T0298 5 :LNVAVVGA 1gd1O 1 :VKVGINGF T0298 14 :GSVGEALVGLLDER 1gd1O 9 :GRIGRNVFRAALKN T0298 30 :PLHRLHLLASAESA 1gd1O 25 :IEVVAVNDLTDANT T0298 44 :GQRMGFAES 1gd1O 54 :DAEVSVNGN T0298 53 :SLRVG 1gd1O 70 :EIIVK T0298 60 :D 1gd1O 77 :R T0298 61 :SFD 1gd1O 79 :PEN T0298 64 :FS 1gd1O 84 :WG T0298 66 :SVGLAFFAAA 1gd1O 88 :GVDIVVESTG T0298 76 :AEVSR 1gd1O 102 :REDAA T0298 85 :RARAAGCSVIDLSGALEPSV 1gd1O 107 :KHLEAGAKKVIISAPAKNED T0298 106 :PPVM 1gd1O 126 :ITIV T0298 112 :VNAERLAS 1gd1O 132 :VNQDKYDP T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 1gd1O 139 :KAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRI T0298 179 :LNARPLEP 1gd1O 194 :RRARAAAE T0298 189 :FDRQI 1gd1O 204 :IPTTT T0298 194 :AFNLLAQ 1gd1O 210 :AAKAVAL T0298 203 :AVDAEG 1gd1O 219 :PELKGK T0298 231 :LNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1gd1O 225 :LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAA T0298 269 :KGIEWVGE 1gd1O 269 :GILAYSEE T0298 280 :PTVVGDALGQDETYVGRVRAGQADPC 1gd1O 277 :PLVSRDYNGSTVSSTIDALSTMVIDG T0298 306 :QVNLWIVSDNV 1gd1O 304 :MVKVVSWYDNE T0298 318 :KGAALNAVLLGELLIKHYL 1gd1O 315 :TGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 23 number of extra gaps= 5 total=652 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gpdG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1gpdG/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1gpdG/merged-good-all-a2m.gz for input Trying 1gpdG/merged-good-all-a2m Error: Couldn't open file 1gpdG/merged-good-all-a2m or 1gpdG/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mb4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mb4A expands to /projects/compbio/data/pdb/1mb4.pdb.gz 1mb4A:# T0298 read from 1mb4A/merged-good-all-a2m # 1mb4A read from 1mb4A/merged-good-all-a2m # adding 1mb4A to template set # found chain 1mb4A in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1mb4A)M1 T0298 6 :NVAVVGATGSVGEALVGLLDERD 1mb4A 2 :RVGLVGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD 1mb4A 26 :FDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGCS 1mb4A 62 :LKQLDAVITCQGGSYTEKVYPALRQAGWK T0298 93 :VIDLSGALEPS 1mb4A 93 :WIDAASTLRMD T0298 104 :VAPPVMVSVNAERLA 1mb4A 105 :EAIITLDPVNLKQIL T0298 119 :SQAAPFLLSSPCAVAA 1mb4A 123 :HHGTKTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPL 1mb4A 139 :MLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSS T0298 185 :EPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1mb4A 213 :PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILG T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1mb4A 256 :DSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATH T0298 269 :KGIEWVGE 1mb4A 300 :DWVKVIPN T0298 284 :GDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1mb4A 319 :AKVTGTLSVPVGRLRKMAMGDDFLNAFTVGDQLLWGAAEPLRRTLRIILA Number of specific fragments extracted= 11 number of extra gaps= 0 total=663 Number of alignments=40 # 1mb4A read from 1mb4A/merged-good-all-a2m # found chain 1mb4A in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1mb4A)M1 T0298 6 :NVAVVGATGSVGEALVGLLDERD 1mb4A 2 :RVGLVGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLL 1mb4A 26 :FDLIEPVFF T0298 39 :SAESAGQRMGFAESSLR 1mb4A 35 :STSQIGVPAPNFGKDAG T0298 56 :VGDVDSFD 1mb4A 53 :LHDAFDIE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGCS 1mb4A 62 :LKQLDAVITCQGGSYTEKVYPALRQAGWK T0298 93 :VIDLSGALEPS 1mb4A 93 :WIDAASTLRMD T0298 104 :VAPPVMVSVNAERLAS 1mb4A 105 :EAIITLDPVNLKQILH T0298 120 :QAAPFLLSSPCAVAA 1mb4A 124 :HGTKTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 1mb4A 139 :MLMALGGLYERGLVEWMSAMTYQAASGAGAQNMREL T0298 172 :ARQTAELLN 1mb4A 178 :MGVINDAVS T0298 181 :ARPLEPRL 1mb4A 191 :NPASSILD T0298 189 :FDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1mb4A 217 :FGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILG T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1mb4A 256 :DSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATH T0298 269 :KGIEWVGE 1mb4A 300 :DWVKVIPN T0298 285 :DALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1mb4A 320 :KVTGTLSVPVGRLRKMAMGDDFLNAFTVGDQLLWGAAEPLRRTLRIILA Number of specific fragments extracted= 15 number of extra gaps= 0 total=678 Number of alignments=41 # 1mb4A read from 1mb4A/merged-good-all-a2m # found chain 1mb4A in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1mb4A)M1 T0298 6 :NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES 1mb4A 2 :RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGK T0298 53 :SLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGC 1mb4A 51 :GMLHDAFDIESLKQLDAVITCQGGSYTEKVYPALRQAGW T0298 92 :SVIDLSGALEPS 1mb4A 92 :YWIDAASTLRMD T0298 104 :VAPPVMVSVNAERLASQ 1mb4A 105 :EAIITLDPVNLKQILHG T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAEL 1mb4A 124 :HGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVI T0298 179 :LNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLG 1mb4A 207 :MRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILG T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG 1mb4A 256 :DSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHNDWVKVIPN T0298 281 :TVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1mb4A 316 :LTPAKVTGTLSVPVGRLRKMAMGDDFLNAFTVGDQLLWGAAEPLRRTLRIILA Number of specific fragments extracted= 8 number of extra gaps= 0 total=686 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dih/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dih expands to /projects/compbio/data/pdb/1dih.pdb.gz 1dih:Warning: there is no chain 1dih will retry with 1dihA # T0298 read from 1dih/merged-good-all-a2m # 1dih read from 1dih/merged-good-all-a2m # adding 1dih to template set # found chain 1dih in template set Warning: unaligning (T0298)S2 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1dih)D3 Warning: unaligning (T0298)A43 because of BadResidue code BAD_PEPTIDE at template residue (1dih)A49 Warning: unaligning (T0298)Q45 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)L52 Warning: unaligning (T0298)R46 because of BadResidue code BAD_PEPTIDE at template residue (1dih)L52 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0298)D148 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0298)C149 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 Warning: unaligning (T0298)P230 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)I206 Warning: unaligning (T0298)L231 because of BadResidue code BAD_PEPTIDE at template residue (1dih)I206 T0298 3 :QPLNVAVVGATGSVGEALVGLLD 1dih 4 :ANIRVAIAGAGGRMGRQLIQAAL T0298 28 :DFPLHRLHL 1dih 27 :ALEGVQLGA T0298 37 :LASAES 1dih 37 :LEREGS T0298 44 :G 1dih 50 :G T0298 47 :MGFAESSLR 1dih 53 :AGAGKTGVT T0298 56 :VGDVDSF 1dih 63 :QSSLDAV T0298 64 :FSSVGLAFF 1dih 70 :KDDFDVFID T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 114 :AERLASQAAPFLLSSP 1dih 111 :KQAIRDAAADIAIVFA T0298 130 :CAVAA 1dih 128 :NFSVG T0298 136 :LCEVLAPLLATL 1dih 133 :VNVMLKLLEKAA T0298 151 :QLNLTACL 1dih 152 :DIEIIEAH T0298 159 :SVSSLGREGVKELARQTA 1dih 166 :APSGTALAMGEAIAHALD T0298 182 :RPLEPRLFD 1dih 184 :KDLKDCAVY T0298 205 :DAEGHSAI 1dih 193 :SREGHTGE T0298 226 :ERIG 1dih 201 :RVPG T0298 232 :NVTCIQ 1dih 207 :GFATVR T0298 245 :SLSVTLQCA 1dih 217 :VGEHTAMFA T0298 275 :GEGD 1dih 226 :DIGE T0298 292 :TYVGRVRAGQ 1dih 230 :RLEITHKASS T0298 317 :RKGAALNAVLLGELLIK 1dih 240 :RMTFANGAVRSALWLSG Number of specific fragments extracted= 21 number of extra gaps= 6 total=707 Number of alignments=43 # 1dih read from 1dih/merged-good-all-a2m # found chain 1dih in template set Warning: unaligning (T0298)A50 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)G46 Warning: unaligning (T0298)E51 because of BadResidue code BAD_PEPTIDE at template residue (1dih)G46 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0298)D148 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0298)C149 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 Warning: unaligning (T0298)P230 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)I206 Warning: unaligning (T0298)L231 because of BadResidue code BAD_PEPTIDE at template residue (1dih)I206 T0298 3 :QPLNVAVVGATGSVGEALVGLLD 1dih 4 :ANIRVAIAGAGGRMGRQLIQAAL T0298 28 :DFPLHRL 1dih 27 :ALEGVQL T0298 35 :HLLASAE 1dih 35 :AALEREG T0298 42 :S 1dih 43 :S T0298 49 :F 1dih 44 :L T0298 52 :SSLRVGDVDSFD 1dih 59 :GVTVQSSLDAVK T0298 65 :SSVGLAFF 1dih 71 :DDFDVFID T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 113 :NAERLASQA 1dih 110 :GKQAIRDAA T0298 122 :APFLLSSPC 1dih 120 :DIAIVFAAN T0298 132 :VAAELCEVLAPLLATL 1dih 129 :FSVGVNVMLKLLEKAA T0298 150 :R 1dih 152 :D T0298 152 :LNLTACL 1dih 153 :IEIIEAH T0298 159 :SVSSLGREGVKELARQ 1dih 166 :APSGTALAMGEAIAHA T0298 182 :RPLEPRL 1dih 182 :LDKDLKD T0298 196 :NLLAQVGAVDAEG 1dih 189 :CAVYSREGHTGER T0298 224 :LGE 1dih 202 :VPG T0298 232 :NVTCIQ 1dih 207 :GFATVR T0298 243 :GDSLSVTLQ 1dih 217 :VGEHTAMFA T0298 288 :GQDETYVGRVRAGQ 1dih 226 :DIGERLEITHKASS T0298 317 :RKGAALNAVLLGELLI 1dih 240 :RMTFANGAVRSALWLS Number of specific fragments extracted= 21 number of extra gaps= 4 total=728 Number of alignments=44 # 1dih read from 1dih/merged-good-all-a2m # found chain 1dih in template set Warning: unaligning (T0298)S2 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1dih)D3 Warning: unaligning (T0298)G44 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)G46 Warning: unaligning (T0298)Q45 because of BadResidue code BAD_PEPTIDE at template residue (1dih)G46 Warning: unaligning (T0298)A73 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0298)A74 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0298)C149 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0298)R150 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 Warning: unaligning (T0298)P230 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)I206 Warning: unaligning (T0298)L231 because of BadResidue code BAD_PEPTIDE at template residue (1dih)I206 T0298 3 :QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA 1dih 4 :ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL T0298 46 :R 1dih 47 :S T0298 47 :MGFAESSLRVGDVDSFDFSSVGLAFF 1dih 53 :AGAGKTGVTVQSSLDAVKDDFDVFID T0298 75 :AAEVSRAHAERARAAGCSVIDLSGALE 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGTTGFD T0298 113 :NAERLASQ 1dih 110 :GKQAIRDA T0298 121 :AAPFLLSSPCAV 1dih 119 :ADIAIVFAANFS T0298 134 :AELCEVLAPLLATLD 1dih 131 :VGVNVMLKLLEKAAK T0298 151 :QLNLTACL 1dih 152 :DIEIIEAH T0298 162 :SLGREGVKELARQTAELLNARPLEPRLFDRQ 1dih 165 :DAPSGTALAMGEAIAHALDKDLKDCAVYSRE T0298 203 :AVDAEGH 1dih 196 :GHTGERV T0298 228 :IG 1dih 203 :PG T0298 232 :NVTCIQ 1dih 207 :GFATVR T0298 276 :EGDYP 1dih 213 :AGDIV T0298 292 :TYVGRVRAGQADPCQVN 1dih 218 :GEHTAMFADIGERLEIT T0298 317 :RKGAALNAVLLGELL 1dih 240 :RMTFANGAVRSALWL Number of specific fragments extracted= 15 number of extra gaps= 5 total=743 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j0xO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1j0xO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1j0xO/merged-good-all-a2m.gz for input Trying 1j0xO/merged-good-all-a2m Error: Couldn't open file 1j0xO/merged-good-all-a2m or 1j0xO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1k3tA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1k3tA expands to /projects/compbio/data/pdb/1k3t.pdb.gz 1k3tA:# T0298 read from 1k3tA/merged-good-all-a2m # 1k3tA read from 1k3tA/merged-good-all-a2m # adding 1k3tA to template set # found chain 1k3tA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1k3tA)M1 Warning: unaligning (T0298)E51 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)G82 Warning: unaligning (T0298)G98 because of BadResidue code BAD_PEPTIDE in next template residue (1k3tA)A135 Warning: unaligning (T0298)A99 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)A135 T0298 4 :PLNVAVVG 1k3tA 2 :PIKVGING T0298 13 :TGSVGEALVGLLDERDF 1k3tA 10 :FGRIGRMVFQALCEDGL T0298 30 :PLHRLHL 1k3tA 32 :DVVAVVD T0298 37 :LASAESAGQRMGFA 1k3tA 40 :NTDAEYFAYQMRYD T0298 52 :SSLR 1k3tA 83 :HRIL T0298 56 :VGDVDSFDFS 1k3tA 91 :QRNPADLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1k3tA 103 :GVEYVIESTGLFTAKAAAEGHLRGGARKV T0298 96 :LS 1k3tA 132 :VI T0298 100 :LEPSVAPPVMVSVNAERLASQ 1k3tA 136 :PASGGAKTLVMGVNHHEYNPS T0298 122 :APFLLSSP 1k3tA 157 :EHHVVSNA T0298 130 :CAVAA 1k3tA 166 :CTTNC T0298 136 :LCEVLAPLLAT 1k3tA 171 :LAPIVHVLVKE T0298 147 :LDCRQLNLTACLSVSSL 1k3tA 183 :FGVQTGLMTTIHSYTAT T0298 176 :AELLNARPLEPRLFDRQIAFNLLA 1k3tA 200 :QKTVDGVSVKDWRGGRAAAVNIIP T0298 205 :DAEGHSAIERRIFAEVQA 1k3tA 224 :STTGAAKAVGMVIPSTQG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1k3tA 242 :KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGR 1k3tA 284 :YMKGILGYTDEELVSADFINDNRSSIYD T0298 298 :RAGQADPCQVNLWIVSDN 1k3tA 318 :NNLPKERRFFKIVSWYDN T0298 317 :RKGAALNAVLLGELLIKH 1k3tA 336 :EWGYSHRVVDLVRHMASK Number of specific fragments extracted= 19 number of extra gaps= 2 total=762 Number of alignments=46 # 1k3tA read from 1k3tA/merged-good-all-a2m # found chain 1k3tA in template set Warning: unaligning (T0298)S97 because of BadResidue code BAD_PEPTIDE in next template residue (1k3tA)A135 Warning: unaligning (T0298)G98 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)A135 T0298 4 :PLNVAVVGA 1k3tA 2 :PIKVGINGF T0298 14 :GSVGEALVGLLDERDF 1k3tA 11 :GRIGRMVFQALCEDGL T0298 30 :PLHRLHLLASAE 1k3tA 29 :TEIDVVAVVDMN T0298 42 :SAGQRMGFAE 1k3tA 42 :DAEYFAYQMR T0298 56 :VGDVDSFDFS 1k3tA 91 :QRNPADLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDL 1k3tA 103 :GVEYVIESTGLFTAKAAAEGHLRGGARKVVI T0298 99 :ALE 1k3tA 136 :PAS T0298 103 :SVAPPVMVSVNAERLASQ 1k3tA 139 :GGAKTLVMGVNHHEYNPS T0298 122 :APFLLSSP 1k3tA 157 :EHHVVSNA T0298 130 :CAVAA 1k3tA 166 :CTTNC T0298 136 :LCEVLAPLLA 1k3tA 171 :LAPIVHVLVK T0298 146 :TLDCRQLNLTACLSVSS 1k3tA 182 :GFGVQTGLMTTIHSYTA T0298 175 :TAELLNARPLEPRLFDRQIAFNLLA 1k3tA 199 :TQKTVDGVSVKDWRGGRAAAVNIIP T0298 205 :DAEG 1k3tA 224 :STTG T0298 213 :ERRIFAEV 1k3tA 228 :AAKAVGMV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1k3tA 236 :IPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGR 1k3tA 284 :YMKGILGYTDEELVSADFINDNRSSIYD T0298 298 :RAGQADPCQVNLWIVSDN 1k3tA 318 :NNLPKERRFFKIVSWYDN T0298 317 :RKGAALNAVLLGELLIKHY 1k3tA 336 :EWGYSHRVVDLVRHMASKD Number of specific fragments extracted= 19 number of extra gaps= 1 total=781 Number of alignments=47 # 1k3tA read from 1k3tA/merged-good-all-a2m # found chain 1k3tA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1k3tA)M1 Warning: unaligning (T0298)P30 because of BadResidue code BAD_PEPTIDE in next template residue (1k3tA)G28 Warning: unaligning (T0298)L31 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)G28 Warning: unaligning (T0298)A50 because of BadResidue code BAD_PEPTIDE in next template residue (1k3tA)G82 Warning: unaligning (T0298)E51 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)G82 Warning: unaligning (T0298)S97 because of BadResidue code BAD_PEPTIDE in next template residue (1k3tA)A135 Warning: unaligning (T0298)G98 because of BadResidue code BAD_PEPTIDE at template residue (1k3tA)A135 T0298 4 :PLNVAVVGA 1k3tA 2 :PIKVGINGF T0298 14 :GSVGEALVGLLDERDF 1k3tA 11 :GRIGRMVFQALCEDGL T0298 32 :HRLHLL 1k3tA 29 :TEIDVV T0298 38 :ASAESAGQR 1k3tA 68 :SSPSVAKDD T0298 47 :MGF 1k3tA 78 :LVV T0298 52 :SSLRVGDVDSFDFS 1k3tA 83 :HRILCVKAQRNPAD T0298 66 :SVGLAFFAAA 1k3tA 103 :GVEYVIESTG T0298 76 :AEVSR 1k3tA 117 :KAAAE T0298 85 :RARAAGCSVIDL 1k3tA 122 :GHLRGGARKVVI T0298 99 :ALE 1k3tA 136 :PAS T0298 104 :VAPPVMVSVNAERLA 1k3tA 140 :GAKTLVMGVNHHEYN T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLA 1k3tA 156 :SEHHVVSNASCTTNCLAPIVHVLVK T0298 146 :TLDCRQLNLTACLSVSSLGRE 1k3tA 182 :GFGVQTGLMTTIHSYTATQKT T0298 179 :LNARPLEPRLFDRQIAFNLLAQVGA 1k3tA 203 :VDGVSVKDWRGGRAAAVNIIPSTTG T0298 216 :IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1k3tA 228 :AAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRA T0298 269 :KGIEWVGEG 1k3tA 286 :KGILGYTDE T0298 280 :PTVVGDALGQDETYVGR 1k3tA 295 :ELVSADFINDNRSSIYD T0298 299 :AGQADPCQVNLWIVSDNV 1k3tA 319 :NLPKERRFFKIVSWYDNE T0298 318 :KGAALNAVLLGELLIKH 1k3tA 337 :WGYSHRVVDLVRHMASK Number of specific fragments extracted= 19 number of extra gaps= 3 total=800 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q2xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1q2xA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1q2xA/merged-good-all-a2m.gz for input Trying 1q2xA/merged-good-all-a2m Error: Couldn't open file 1q2xA/merged-good-all-a2m or 1q2xA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ihxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1ihxA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1ihxA/merged-good-all-a2m.gz for input Trying 1ihxA/merged-good-all-a2m Error: Couldn't open file 1ihxA/merged-good-all-a2m or 1ihxA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pquA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1pquA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1pquA/merged-good-all-a2m.gz for input Trying 1pquA/merged-good-all-a2m Error: Couldn't open file 1pquA/merged-good-all-a2m or 1pquA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cvoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/2cvoA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/2cvoA/merged-good-all-a2m.gz for input Trying 2cvoA/merged-good-all-a2m Error: Couldn't open file 2cvoA/merged-good-all-a2m or 2cvoA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pu2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1pu2A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1pu2A/merged-good-all-a2m.gz for input Trying 1pu2A/merged-good-all-a2m Error: Couldn't open file 1pu2A/merged-good-all-a2m or 1pu2A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gd1O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gd1O expands to /projects/compbio/data/pdb/2gd1.pdb.gz 2gd1O:# T0298 read from 2gd1O/merged-good-all-a2m # 2gd1O read from 2gd1O/merged-good-all-a2m # adding 2gd1O to template set # found chain 2gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2gd1O)A0 Warning: unaligning (T0298)N6 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0298)V7 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0298)V108 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V129 Warning: unaligning (T0298)M109 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V129 Warning: unaligning (T0298)L125 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0298)L126 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0298)L258 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0298)A259 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 Warning: unaligning (T0298)V307 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)K306 Warning: unaligning (T0298)N308 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)K306 T0298 5 :L 2gd1O 1 :V T0298 8 :AVVG 2gd1O 4 :GING T0298 13 :TGSVGEALVGLLDE 2gd1O 8 :FGRIGRNVFRAALK T0298 27 :RDFPLHRLHLLASAESAGQRMGFA 2gd1O 23 :PDIEVVAVNDLTDANTLAHLLKYD T0298 51 :ESSLR 2gd1O 68 :GKEII T0298 56 :VGDVDSFDFS 2gd1O 76 :ERDPENLAWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 2gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAGAKKV T0298 96 :LSGALEPSVAPP 2gd1O 117 :IISAPAKNEDIT T0298 110 :VSVNAERLASQ 2gd1O 130 :MGVNQDKYDPK T0298 122 :APF 2gd1O 140 :AHH T0298 127 :SSP 2gd1O 145 :SNA T0298 130 :CAVAA 2gd1O 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 2gd1O 154 :LAPFAKVLHEQFGIVRGMMTTVHSYTND T0298 176 :AELLNARP 2gd1O 182 :QRILDLPH T0298 185 :EPRLFDRQIAFNLLA 2gd1O 191 :KDLRRARAAAESIIP T0298 205 :DAEGHSAIERRIFAEVQA 2gd1O 206 :TTTGAAKAVALVLPELKG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVD 2gd1O 224 :KLNGMAMRVPTPNVSVVDLVAELEKEVT T0298 260 :AVTRVLDAT 2gd1O 254 :EVNAALKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 2gd1O 266 :ELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVI T0298 304 :PCQ 2gd1O 302 :GKM T0298 309 :LWIVSDN 2gd1O 307 :VVSWYDN T0298 317 :RKGAALNAVLLGELLIKHYL 2gd1O 314 :ETGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 22 number of extra gaps= 5 total=822 Number of alignments=49 # 2gd1O read from 2gd1O/merged-good-all-a2m # found chain 2gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2gd1O)A0 Warning: unaligning (T0298)N6 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0298)V7 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0298)V108 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V129 Warning: unaligning (T0298)M109 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V129 Warning: unaligning (T0298)L125 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0298)L126 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0298)L258 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0298)A259 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 Warning: unaligning (T0298)V307 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)K306 Warning: unaligning (T0298)N308 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)K306 T0298 5 :L 2gd1O 1 :V T0298 8 :AVVGA 2gd1O 4 :GINGF T0298 14 :GSVGEALVGLLD 2gd1O 9 :GRIGRNVFRAAL T0298 28 :DFPLHRLHLLASAESAGQRMGFAE 2gd1O 21 :KNPDIEVVAVNDLTDANTLAHLLK T0298 53 :SLR 2gd1O 70 :EII T0298 56 :VGDVDSFDFS 2gd1O 76 :ERDPENLAWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSV 2gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNED T0298 106 :PP 2gd1O 126 :IT T0298 110 :VSVNAERLASQ 2gd1O 130 :MGVNQDKYDPK T0298 122 :APF 2gd1O 140 :AHH T0298 127 :SSP 2gd1O 145 :SNA T0298 130 :CAVAA 2gd1O 149 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 2gd1O 154 :LAPFAKVLHEQFGIVRGMMTTVHSYTN T0298 173 :RQ 2gd1O 181 :DQ T0298 177 :ELLNARPLEPRL 2gd1O 183 :RILDLPHKDLRR T0298 190 :DRQIAFNLLA 2gd1O 196 :ARAAAESIIP T0298 205 :DAEG 2gd1O 206 :TTTG T0298 213 :ERRIFAEV 2gd1O 210 :AAKAVALV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVD 2gd1O 218 :LPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVT T0298 260 :AVTRVLDAT 2gd1O 254 :EVNAALKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 2gd1O 266 :ELKGILAYSEEPLVSRDYNGSTVSSTIDALSTM T0298 302 :ADPCQ 2gd1O 300 :IDGKM T0298 309 :LWIVSDN 2gd1O 307 :VVSWYDN T0298 317 :RKGAALNAVLLGELLIKHYL 2gd1O 314 :ETGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 24 number of extra gaps= 5 total=846 Number of alignments=50 # 2gd1O read from 2gd1O/merged-good-all-a2m # found chain 2gd1O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (2gd1O)A0 Warning: unaligning (T0298)N6 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0298)V7 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0298)V108 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V129 Warning: unaligning (T0298)M109 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V129 Warning: unaligning (T0298)L125 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0298)L126 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0298)L258 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0298)A259 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 Warning: unaligning (T0298)V307 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)K306 Warning: unaligning (T0298)N308 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)K306 T0298 5 :L 2gd1O 1 :V T0298 8 :AVVGA 2gd1O 4 :GINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 2gd1O 9 :GRIGRNVFRAALKNPDIEVVAVNDLTDANT T0298 44 :GQRMGFAESSLRVGDV 2gd1O 61 :GNNLVVNGKEIIVKAE T0298 60 :DSFDFS 2gd1O 78 :DPENLA T0298 66 :SVGLAFFAAA 2gd1O 88 :GVDIVVESTG T0298 76 :AEVSR 2gd1O 102 :REDAA T0298 85 :RARAAGCSVIDLSGALEPSV 2gd1O 107 :KHLEAGAKKVIISAPAKNED T0298 106 :PP 2gd1O 126 :IT T0298 110 :VSVNAERLAS 2gd1O 130 :MGVNQDKYDP T0298 121 :AAPF 2gd1O 139 :KAHH T0298 127 :SSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 2gd1O 145 :SNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRI T0298 180 :NARPLEPRLFDRQIAFNLLAQVGA 2gd1O 185 :LDLPHKDLRRARAAAESIIPTTTG T0298 220 :VQALLG 2gd1O 210 :AAKAVA T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVD 2gd1O 220 :ELKGKLNGMAMRVPTPNVSVVDLVAELEKEVT T0298 260 :AVTRVLDAT 2gd1O 254 :EVNAALKAA T0298 271 :IEWVGE 2gd1O 271 :LAYSEE T0298 280 :PTVVGDALGQDETYVGRVRAGQA 2gd1O 277 :PLVSRDYNGSTVSSTIDALSTMV T0298 303 :DPCQ 2gd1O 301 :DGKM T0298 309 :LWIVSDNV 2gd1O 307 :VVSWYDNE T0298 318 :KGAALNAVLLGELLIKHYL 2gd1O 315 :TGYSHRVVDLAAYIASKGL Number of specific fragments extracted= 21 number of extra gaps= 5 total=867 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s7cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1s7cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1s7cA/merged-good-all-a2m.gz for input Trying 1s7cA/merged-good-all-a2m Error: Couldn't open file 1s7cA/merged-good-all-a2m or 1s7cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ggaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1ggaA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1ggaA/merged-good-all-a2m.gz for input Trying 1ggaA/merged-good-all-a2m Error: Couldn't open file 1ggaA/merged-good-all-a2m or 1ggaA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vc2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1vc2A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1vc2A/merged-good-all-a2m.gz for input Trying 1vc2A/merged-good-all-a2m Error: Couldn't open file 1vc2A/merged-good-all-a2m or 1vc2A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2czcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2czcA expands to /projects/compbio/data/pdb/2czc.pdb.gz 2czcA:# T0298 read from 2czcA/merged-good-all-a2m # 2czcA read from 2czcA/merged-good-all-a2m # adding 2czcA to template set # found chain 2czcA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (2czcA)M1 T0298 4 :PLNVAVVG 2czcA 2 :KVKVGVNG T0298 13 :TGSVGEALVGLLDE 2czcA 10 :YGTIGKRVAYAVTK T0298 27 :RDFPLHRLHLLASAESAGQRMGFAESSLRVGDVD 2czcA 25 :DDMELIGITKTKPDFEAYRAKELGIPVYAASEEF T0298 61 :SFDFS 2czcA 66 :GFEVA T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 2czcA 79 :KVDIIVDATPGGIGAKNKPLYEKAGVKAI T0298 96 :LSGALEPS 2czcA 108 :FQGGEKAD T0298 104 :VAPPVMVSVNAERLA 2czcA 117 :AEVSFVAQANYEAAL T0298 122 :APFLLSSP 2czcA 132 :GKNYVRVV T0298 130 :CAVAA 2czcA 141 :CNTTG T0298 136 :LCEVLAPLLAT 2czcA 146 :LVRTLSAIREY T0298 149 :CRQLNLTACLSVSSL 2czcA 157 :ADYVYAVMIRRAADP T0298 180 :NARPLEPRLFDRQI 2czcA 172 :NDTKRGPINAIKPT T0298 205 :DAEGH 2czcA 186 :VEVPS T0298 215 :RIFAEVQAL 2czcA 191 :HHGPDVQTV T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG 2czcA 200 :IPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKE T0298 278 :DY 2czcA 252 :GF T0298 284 :GDALGQDETYVGRV 2czcA 266 :LHREWNNLYEIAVW T0298 298 :RAGQADPCQVNLWIVSDN 2czcA 281 :ESINIKGNRLFYIQAVHQ T0298 317 :RKGAALNAVLLGELLIK 2czcA 299 :ESDVIPENIDAIRAMFE Number of specific fragments extracted= 19 number of extra gaps= 0 total=886 Number of alignments=52 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set T0298 1 :M 2czcA 1 :M T0298 4 :PLNVAVVGA 2czcA 2 :KVKVGVNGY T0298 14 :GSVGEALVGLLD 2czcA 11 :GTIGKRVAYAVT T0298 28 :DFPLHRLHLLASAE 2czcA 23 :KQDDMELIGITKTK T0298 42 :SAGQRMGFAESSLRVGDVD 2czcA 40 :EAYRAKELGIPVYAASEEF T0298 61 :SFDFS 2czcA 66 :GFEVA T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 2czcA 79 :KVDIIVDATPGGIGAKNKPLYEKAGVKAI T0298 96 :LSGALEPS 2czcA 108 :FQGGEKAD T0298 104 :VAPPVMVSVNAERLA 2czcA 117 :AEVSFVAQANYEAAL T0298 122 :APFLLSSP 2czcA 132 :GKNYVRVV T0298 130 :CAVAA 2czcA 141 :CNTTG T0298 136 :LCEVLAPLLAT 2czcA 146 :LVRTLSAIREY T0298 149 :CRQLNLTACLSVSSLG 2czcA 157 :ADYVYAVMIRRAADPN T0298 177 :ELLNARPLEP 2czcA 173 :DTKRGPINAI T0298 198 :LAQVGAVDAEG 2czcA 183 :KPTVEVPSHHG T0298 218 :AEVQALL 2czcA 194 :PDVQTVI T0298 228 :IGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGD 2czcA 201 :PINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEK T0298 279 :Y 2czcA 253 :F T0298 284 :GDALGQDETYVG 2czcA 266 :LHREWNNLYEIA T0298 297 :VRAGQ 2czcA 278 :VWKES T0298 302 :ADPCQVNLWIVSDN 2czcA 285 :IKGNRLFYIQAVHQ T0298 317 :RKGAALNAVLLGELLIK 2czcA 299 :ESDVIPENIDAIRAMFE Number of specific fragments extracted= 22 number of extra gaps= 0 total=908 Number of alignments=53 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (2czcA)M1 T0298 4 :PLNVAVVG 2czcA 2 :KVKVGVNG T0298 13 :TGSVGEALVGLLDERDFPLHRLHLLASAESA 2czcA 10 :YGTIGKRVAYAVTKQDDMELIGITKTKPDFE T0298 44 :GQRMGFAES 2czcA 48 :GIPVYAASE T0298 53 :SLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDL 2czcA 66 :GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ T0298 98 :GALEPSVAPPVM 2czcA 110 :GGEKADVAEVSF T0298 112 :VNAERLASQAAPFLLSSPCAVAAELCEVLAPLLAT 2czcA 122 :VAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREY T0298 149 :CRQLNLTACLSVSSL 2czcA 157 :ADYVYAVMIRRAADP T0298 180 :NARPLEPRLFD 2czcA 172 :NDTKRGPINAI T0298 202 :GAVDAEGH 2czcA 183 :KPTVEVPS T0298 219 :EVQALLG 2czcA 191 :HHGPDVQ T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG 2czcA 199 :VIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKE T0298 278 :DYPT 2czcA 252 :GFDS T0298 284 :GDALGQDETYVGRVR 2czcA 266 :LHREWNNLYEIAVWK T0298 299 :AGQADPCQVNLWIVSDNVRK 2czcA 282 :SINIKGNRLFYIQAVHQESD T0298 320 :AALNAVLLGELLI 2czcA 302 :VIPENIDAIRAMF Number of specific fragments extracted= 15 number of extra gaps= 0 total=923 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1znqO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1znqO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1znqO/merged-good-all-a2m.gz for input Trying 1znqO/merged-good-all-a2m Error: Couldn't open file 1znqO/merged-good-all-a2m or 1znqO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xygA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1xygA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1xygA/merged-good-all-a2m.gz for input Trying 1xygA/merged-good-all-a2m Error: Couldn't open file 1xygA/merged-good-all-a2m or 1xygA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nvmB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0298 read from 1nvmB/merged-good-all-a2m # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set Warning: unaligning (T0298)P239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0298)V240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nvmB)P203 T0298 1 :MSQPLNVAVVG 1nvmB 1 :MNQKLKVAIIG T0298 13 :TGSVGEALVGLLDE 1nvmB 12 :SGNIGTDLMIKVLR T0298 28 :DFPLHRLHLL 1nvmB 26 :NAKYLEMGAM T0298 38 :ASAES 1nvmB 38 :IDAAS T0298 43 :AGQRMGFAESSLR 1nvmB 44 :GLARAQRMGVTTT T0298 59 :V 1nvmB 66 :L T0298 62 :FDFSSVGLAFFAAAAEVSRAHAERARAA 1nvmB 67 :PEFADIDFVFDATSASAHVQNEALLRQA T0298 90 :GCSVIDLSGALE 1nvmB 97 :GIRLIDLTPAAI T0298 105 :APPVMVSV 1nvmB 109 :GPYCVPVV T0298 116 :RLASQAAPFLLSSP 1nvmB 117 :NLEEHLGKLNVNMV T0298 130 :CAVAA 1nvmB 132 :CGGQA T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREG 1nvmB 137 :TIPMVAAVSRVAKVHYAEIVASISSKSAGPGT T0298 207 :EGHSAIERRIFAEV 1nvmB 169 :RANIDEFTETTSKA T0298 221 :QALLGERIGPLNVTCIQA 1nvmB 184 :EVIGGAAKGKAIIIMNPA T0298 241 :FFGDSLSVTLQCA 1nvmB 204 :PLIMRDTVYVLSA T0298 255 :PVDLAAVTRVLDAT 1nvmB 217 :AADQAAVAASVAEM T0298 269 :KGIEWVGE 1nvmB 239 :PGYRLKQQ T0298 277 :GDYPT 1nvmB 254 :ESAPL T0298 285 :DALGQDETYVGRVRA 1nvmB 259 :NIPGLGRFSGLKTSV T0298 306 :QVNL 1nvmB 274 :FLEV T0298 315 :N 1nvmB 290 :N T0298 317 :RKGAALNAVLLGELLIKHY 1nvmB 291 :LDIMTSAALATAERMAQSM Number of specific fragments extracted= 22 number of extra gaps= 1 total=945 Number of alignments=55 # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set Warning: unaligning (T0298)P239 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0298)V240 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nvmB)P203 T0298 1 :MSQPLNVAVVGA 1nvmB 1 :MNQKLKVAIIGS T0298 14 :GSVGEALVGLLD 1nvmB 13 :GNIGTDLMIKVL T0298 27 :RDFPLHRLHLL 1nvmB 25 :RNAKYLEMGAM T0298 38 :ASAESAGQRMGFAESSLRVGD 1nvmB 38 :IDAASDGLARAQRMGVTTTYA T0298 59 :VDS 1nvmB 66 :LPE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAA 1nvmB 69 :FADIDFVFDATSASAHVQNEALLRQA T0298 90 :GCSVIDLSGALE 1nvmB 97 :GIRLIDLTPAAI T0298 105 :APPVMVSVNAERLAS 1nvmB 109 :GPYCVPVVNLEEHLG T0298 122 :APFLLSSPCAVAA 1nvmB 124 :KLNVNMVTCGGQA T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLG 1nvmB 137 :TIPMVAAVSRVAKVHYAEIVASISSKSAG T0298 165 :REGVKELARQ 1nvmB 169 :RANIDEFTET T0298 213 :ERRIFAEV 1nvmB 179 :TSKAIEVI T0298 224 :LGERIGPLNVTCIQA 1nvmB 187 :GGAAKGKAIIIMNPA T0298 241 :FFGDSLSVTLQCA 1nvmB 204 :PLIMRDTVYVLSA T0298 255 :PVDLAAVTRVLDAT 1nvmB 217 :AADQAAVAASVAEM T0298 269 :KGIEWV 1nvmB 239 :PGYRLK T0298 280 :PTVVGDALGQDETYVG 1nvmB 245 :QQVQFDVIPESAPLNI T0298 300 :GQADP 1nvmB 261 :PGLGR T0298 305 :CQVNLWIVSD 1nvmB 267 :SGLKTSVFLE T0298 315 :NVRKGAALNAVLLGELLIKH 1nvmB 289 :GNLDIMTSAALATAERMAQS Number of specific fragments extracted= 20 number of extra gaps= 1 total=965 Number of alignments=56 # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set T0298 1 :MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA 1nvmB 1 :MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASD T0298 44 :GQRMGFAE 1nvmB 52 :GVTTTYAG T0298 60 :DSFDFSSVGLAFFAAAAEVSRAHAERARAA 1nvmB 65 :KLPEFADIDFVFDATSASAHVQNEALLRQA T0298 90 :GCSVIDLSGALE 1nvmB 97 :GIRLIDLTPAAI T0298 105 :APPVMVS 1nvmB 109 :GPYCVPV T0298 115 :ERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLS 1nvmB 116 :VNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASIS T0298 161 :SSLGREGVKELARQTAELL 1nvmB 161 :SKSAGPGTRANIDEFTETT T0298 217 :FAEVQALLGERIGPLNVTCI 1nvmB 180 :SKAIEVIGGAAKGKAIIIMN T0298 244 :DSLSVTLQCA 1nvmB 207 :MRDTVYVLSA T0298 255 :PVDLAAVTRVLDA 1nvmB 217 :AADQAAVAASVAE T0298 268 :TKG 1nvmB 238 :VPG T0298 271 :IEW 1nvmB 247 :VQF T0298 274 :VGEGDYPTVVGDALGQDETYVGRVRAGQADPC 1nvmB 251 :VIPESAPLNIPGLGRFSGLKTSVFLEVEGAAH T0298 313 :SDNVRK 1nvmB 288 :AGNLDI T0298 320 :AALNAVLLGELLIKH 1nvmB 294 :MTSAALATAERMAQS Number of specific fragments extracted= 15 number of extra gaps= 0 total=980 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xygD/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xygD expands to /projects/compbio/data/pdb/1xyg.pdb.gz 1xygD:# T0298 read from 1xygD/merged-good-all-a2m # 1xygD read from 1xygD/merged-good-all-a2m # adding 1xygD to template set # found chain 1xygD in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1xygD)K15 T0298 4 :PLNVAVVGATGSVGEALVGLLD 1xygD 16 :DIRIGLLGASGYTGAEIVRLLA T0298 28 :DFPLHRLHLLASAESAGQRMGFAESSLR 1xygD 38 :NHPHFQVTLMTADRKAGQSMESVFPHLR T0298 56 :VGDVDSFDFSSVGLAFFAAAAEVSRAHAE 1xygD 72 :LVSVKDADFSTVDAVFCCLPHGTTQEIIK T0298 89 :AGCSVIDLSGALEPSV 1xygD 104 :TALKIVDLSADFRLRN T0298 105 :APPVMVSVNAERLA 1xygD 140 :VVYGLTEILREDIK T0298 122 :APFLLSSP 1xygD 154 :KARLVANP T0298 130 :CAVAA 1xygD 163 :CYPTT T0298 136 :LCEVLAPLLATLDCR 1xygD 168 :IQLPLVPLLKANLIK T0298 151 :QLNLTACLSVSSLGR 1xygD 185 :NIIIDAKSGVSGAGR T0298 181 :ARP 1xygD 200 :GAK T0298 186 :PRLFDRQIA 1xygD 203 :EANLYSEIA T0298 202 :GAVDAEGHSAIERRIFAEVQA 1xygD 217 :YGVTRHRHVPEIEQGLSDVAQ T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1xygD 238 :SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTS T0298 269 :KGIEWVGEGDYPTVV 1xygD 284 :EFVKVLDEGVVPRTH T0298 285 :DALGQDETYVGRVR 1xygD 299 :NVRGSNYCHMSVFP T0298 301 :QADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1xygD 313 :DRIPGRAIIISVIDNLVKGASGQALQNLNIMLG Number of specific fragments extracted= 16 number of extra gaps= 0 total=996 Number of alignments=58 # 1xygD read from 1xygD/merged-good-all-a2m # found chain 1xygD in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1xygD)K15 T0298 4 :PLNVAVVGATGSVGEALVGLLD 1xygD 16 :DIRIGLLGASGYTGAEIVRLLA T0298 28 :DFPLHRLHLLASAESAGQRMGFAESSLR 1xygD 38 :NHPHFQVTLMTADRKAGQSMESVFPHLR T0298 56 :VGDVDSFDFSSVGLAFFAAAAEVSRAHAE 1xygD 72 :LVSVKDADFSTVDAVFCCLPHGTTQEIIK T0298 89 :AGCSVIDLSGALEPSV 1xygD 104 :TALKIVDLSADFRLRN T0298 105 :APPVMVSVNAERLA 1xygD 140 :VVYGLTEILREDIK T0298 122 :APFLLSSP 1xygD 154 :KARLVANP T0298 130 :CAVAA 1xygD 163 :CYPTT T0298 136 :LCEVLAPLLATLDCR 1xygD 168 :IQLPLVPLLKANLIK T0298 151 :QLNLTACLSVSSLG 1xygD 185 :NIIIDAKSGVSGAG T0298 165 :REG 1xygD 203 :EAN T0298 168 :VKELAR 1xygD 207 :YSEIAE T0298 178 :LLNARPL 1xygD 213 :GISSYGV T0298 205 :DAEGHSAIERRIFAEV 1xygD 220 :TRHRHVPEIEQGLSDV T0298 225 :GERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1xygD 236 :AQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTS T0298 269 :KGIEWVGEGDYPTVV 1xygD 284 :EFVKVLDEGVVPRTH T0298 285 :DALGQDETYVG 1xygD 299 :NVRGSNYCHMS T0298 297 :VRAGQ 1xygD 310 :VFPDR T0298 303 :DPCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL 1xygD 315 :IPGRAIIISVIDNLVKGASGQALQNLNIMLGYPE Number of specific fragments extracted= 18 number of extra gaps= 0 total=1014 Number of alignments=59 # 1xygD read from 1xygD/merged-good-all-a2m # found chain 1xygD in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1xygD)K15 T0298 4 :PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA 1xygD 16 :DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ T0298 46 :R 1xygD 56 :S T0298 47 :MGFAESS 1xygD 62 :PHLRAQK T0298 54 :LRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE 1xygD 70 :PTLVSVKDADFSTVDAVFCCLPHGTTQEIIK T0298 89 :AGCSVIDLSGALEPS 1xygD 104 :TALKIVDLSADFRLR T0298 109 :MVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLA 1xygD 141 :VYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLK T0298 146 :TLDCRQLNLTACLSVSSLGRE 1xygD 180 :LIKHENIIIDAKSGVSGAGRG T0298 184 :LEPRLFDRQIA 1xygD 201 :AKEANLYSEIA T0298 202 :GAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1xygD 213 :GISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTS T0298 269 :KG 1xygD 281 :ED T0298 271 :IEWVGEGDYPTVVGDALGQDETYVGR 1xygD 285 :FVKVLDEGVVPRTHNVRGSNYCHMSV T0298 299 :AGQADPCQVNLWIVSDNVRKGAALNAVLLGELLI 1xygD 311 :FPDRIPGRAIIISVIDNLVKGASGQALQNLNIML Number of specific fragments extracted= 12 number of extra gaps= 0 total=1026 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dbvO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/2dbvO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/2dbvO/merged-good-all-a2m.gz for input Trying 2dbvO/merged-good-all-a2m Error: Couldn't open file 2dbvO/merged-good-all-a2m or 2dbvO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f06A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f06A expands to /projects/compbio/data/pdb/1f06.pdb.gz 1f06A:# T0298 read from 1f06A/merged-good-all-a2m # 1f06A read from 1f06A/merged-good-all-a2m # adding 1f06A to template set # found chain 1f06A in template set T0298 1 :MS 1f06A 1 :MT T0298 4 :PLNVAVVG 1f06A 3 :NIRVAIVG T0298 13 :TGSVGEALVGLLD 1f06A 11 :YGNLGRSVEKLIA T0298 28 :DFPLHRLHL 1f06A 24 :KQPDMDLVG T0298 37 :LASAE 1f06A 34 :FSRRA T0298 46 :RMGFAESSLRVGDVDSF 1f06A 39 :TLDTKTPVFDVADVDKH T0298 64 :FSSVGLAFFAAAAEVS 1f06A 56 :ADDVDVLFLCMGSATD T0298 80 :RAHAERA 1f06A 73 :PEQAPKF T0298 90 :GCSV 1f06A 82 :FACT T0298 96 :LSGALEPSV 1f06A 86 :VDTYDNHRD T0298 114 :AERLASQ 1f06A 103 :NEAATAA T0298 123 :PFLLSSPCAVAA 1f06A 110 :GNVALVSTGWDP T0298 136 :LCEVLAPLLATLDCRQLNLTACLS 1f06A 122 :GMFSINRVYAAAVLAEHQQHTFWG T0298 160 :VS 1f06A 148 :LS T0298 165 :REGVKELARQ 1f06A 150 :QGHSDALRRI T0298 182 :RPLE 1f06A 160 :PGVQ T0298 192 :QIAFNLLA 1f06A 164 :KAVQYTLP T0298 205 :D 1f06A 172 :S T0298 214 :RRIFAEVQA 1f06A 173 :EDALEKARR T0298 224 :LGERIGP 1f06A 182 :GEAGDLT T0298 244 :DSLSVTLQCAEP 1f06A 193 :HKRQCFVVADAA T0298 258 :LAAVTRVLDAT 1f06A 206 :HERIENDIRTM T0298 269 :KGIEWVGE 1f06A 221 :VGYEVEVN T0298 277 :GDYPT 1f06A 240 :TGMPH T0298 291 :ETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1f06A 245 :GGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHR Number of specific fragments extracted= 25 number of extra gaps= 0 total=1051 Number of alignments=61 # 1f06A read from 1f06A/merged-good-all-a2m # found chain 1f06A in template set T0298 1 :MSQ 1f06A 1 :MTN T0298 5 :LNVAVVGA 1f06A 4 :IRVAIVGY T0298 14 :GSVGEALVGLLD 1f06A 12 :GNLGRSVEKLIA T0298 28 :DFPLHRLHLL 1f06A 24 :KQPDMDLVGI T0298 38 :ASAESAGQ 1f06A 35 :SRRATLDT T0298 50 :AESSLRVGDVDSF 1f06A 43 :KTPVFDVADVDKH T0298 64 :FSSVGLAFFAAA 1f06A 56 :ADDVDVLFLCMG T0298 76 :AEVSRAHAERA 1f06A 69 :ATDIPEQAPKF T0298 90 :GCSVIDLSGA 1f06A 82 :FACTVDTYDN T0298 102 :PSV 1f06A 92 :HRD T0298 114 :AERLASQAAPFLLSSPCAVAA 1f06A 103 :NEAATAAGNVALVSTGWDPGM T0298 136 :LCEVLAP 1f06A 124 :FSINRVY T0298 143 :LLATLDCRQLNLTACLS 1f06A 156 :LRRIPGVQKAVQYTLPS T0298 165 :REGVKELARQ 1f06A 173 :EDALEKARRG T0298 180 :NARPLEPRL 1f06A 183 :EAGDLTGKQ T0298 201 :V 1f06A 201 :A T0298 205 :DAEG 1f06A 202 :DAAD T0298 213 :ERRIFAEVQA 1f06A 206 :HERIENDIRT T0298 224 :LGER 1f06A 216 :MPDY T0298 228 :IGPLNV 1f06A 224 :EVEVNF T0298 256 :VDLAAVTR 1f06A 230 :IDEATFDS T0298 285 :DALGQDETYVGRVRAGQ 1f06A 238 :EHTGMPHGGHVITTGDT T0298 302 :ADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1f06A 256 :GFNHTVEYILKLDRNPDFTASSQIAFGRAAHR Number of specific fragments extracted= 23 number of extra gaps= 0 total=1074 Number of alignments=62 # 1f06A read from 1f06A/merged-good-all-a2m # found chain 1f06A in template set T0298 3 :QPLNVAVVG 1f06A 2 :TNIRVAIVG T0298 13 :TGSVGEALVGLLDERDFPLHRLHLLASAE 1f06A 11 :YGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0298 50 :AESSLRVGDVDSFD 1f06A 40 :LDTKTPVFDVADVD T0298 64 :FSSVGLAFFAAAA 1f06A 56 :ADDVDVLFLCMGS T0298 77 :EVSRAHAERA 1f06A 70 :TDIPEQAPKF T0298 89 :AGCSVIDLSGALEPS 1f06A 81 :QFACTVDTYDNHRDI T0298 114 :AERLASQAAPFLLSS 1f06A 103 :NEAATAAGNVALVST T0298 129 :PCAVAAELCEV 1f06A 121 :PGMFSINRVYA T0298 142 :PLLATLDCRQLNLTACLS 1f06A 155 :ALRRIPGVQKAVQYTLPS T0298 165 :REGVKELARQ 1f06A 173 :EDALEKARRG T0298 204 :VDAEGHSAIE 1f06A 183 :EAGDLTGKQT T0298 244 :DSLSVTLQCAEP 1f06A 193 :HKRQCFVVADAA T0298 258 :LAAVTRVLDATKG 1f06A 206 :HERIENDIRTMPD T0298 271 :IEWVGEG 1f06A 225 :VEVNFID T0298 286 :ALGQDETYVGRVRAGQADPCQVNLWIV 1f06A 239 :HTGMPHGGHVITTGDTGGFNHTVEYIL T0298 313 :SDNVRKGAALNAVLLGELLIK 1f06A 267 :LDRNPDFTASSQIAFGRAAHR Number of specific fragments extracted= 16 number of extra gaps= 0 total=1090 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dssG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dssG expands to /projects/compbio/data/pdb/1dss.pdb.gz 1dssG:Bad short name: OZ1 for alphabet: pdb_atoms Bad short name: OZ2 for alphabet: pdb_atoms # T0298 read from 1dssG/merged-good-all-a2m # 1dssG read from 1dssG/merged-good-all-a2m # adding 1dssG to template set # found chain 1dssG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1dssG)S1 Warning: unaligning (T0298)A131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dssG)T150 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)H176 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)H176 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)I203 Warning: unaligning (T0298)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)F230 Warning: unaligning (T0298)I236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)F230 Warning: unaligning (T0298)R317 because of BadResidue code BAD_PEPTIDE in next template residue (1dssG)F315 Warning: unaligning (T0298)K318 because of BadResidue code BAD_PEPTIDE at template residue (1dssG)F315 T0298 6 :NVAVVG 1dssG 2 :KIGING T0298 13 :TGSVGEALVGLLDERDFPLHRLHL 1dssG 8 :FGRIGRLVLRAALEMGAQVVAVND T0298 37 :LASAESAGQRMGFA 1dssG 34 :FIALEYMVYMFKYD T0298 51 :ESSLRVGDVDSFDFS 1dssG 71 :ITVFNEMKPENIPWS T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1dssG 88 :GAEYIVESTGVFTTIEKASAHFKGGAKKV T0298 96 :LSGALE 1dssG 117 :IISAPS T0298 103 :SVAPPVMVSVNAERLAS 1dssG 123 :ADAPMFVCGVNLEKYSK T0298 122 :APFLLSSP 1dssG 140 :DMKVVSNA T0298 132 :VAA 1dssG 151 :TNC T0298 136 :LCEVLAPLLATLDCRQLNLTA 1dssG 154 :LAPVAKVLHENFEIVEGLMTT T0298 159 :SVSSL 1dssG 177 :AVTAT T0298 176 :AELLNARPLEPRLFDRQIA 1dssG 182 :QKTVDGPSAKDWRGGRGAA T0298 198 :LA 1dssG 204 :IP T0298 205 :DAEGHSAIERRIFAEVQA 1dssG 206 :SSTGAAKAVGKVIPELDG T0298 230 :PLNVT 1dssG 224 :KLTGM T0298 237 :QAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1dssG 231 :RVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1dssG 266 :PLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQL T0298 304 :PCQVNLWIVSDN 1dssG 302 :KTFVKVVSWYDN T0298 319 :GAALNAVLLGELLIKH 1dssG 316 :GYSQRVIDLIKHMQKV Number of specific fragments extracted= 19 number of extra gaps= 4 total=1109 Number of alignments=64 # 1dssG read from 1dssG/merged-good-all-a2m # found chain 1dssG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1dssG)S1 Warning: unaligning (T0298)A131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dssG)T150 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)H176 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)H176 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)I203 Warning: unaligning (T0298)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)F230 Warning: unaligning (T0298)I236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)F230 Warning: unaligning (T0298)R317 because of BadResidue code BAD_PEPTIDE in next template residue (1dssG)F315 Warning: unaligning (T0298)K318 because of BadResidue code BAD_PEPTIDE at template residue (1dssG)F315 T0298 6 :NVAVVGA 1dssG 2 :KIGINGF T0298 14 :GSVGEALVGLLDERDFP 1dssG 9 :GRIGRLVLRAALEMGAQ T0298 34 :LHLLASAE 1dssG 27 :VVAVNDPF T0298 42 :SAGQRMGFAE 1dssG 36 :ALEYMVYMFK T0298 52 :SSLRVGDVDSFDFS 1dssG 72 :TVFNEMKPENIPWS T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGA 1dssG 88 :GAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP T0298 102 :PSVAPPVMVSVNAERLAS 1dssG 122 :SADAPMFVCGVNLEKYSK T0298 122 :APFLLSSP 1dssG 140 :DMKVVSNA T0298 132 :VAA 1dssG 151 :TNC T0298 136 :LCEVLAPLLATLDCRQLNLTA 1dssG 154 :LAPVAKVLHENFEIVEGLMTT T0298 159 :SVSS 1dssG 177 :AVTA T0298 175 :TAELLNARPLEPRLFDRQIA 1dssG 181 :TQKTVDGPSAKDWRGGRGAA T0298 198 :LA 1dssG 204 :IP T0298 205 :DAEG 1dssG 206 :SSTG T0298 213 :ERRIFAEV 1dssG 210 :AAKAVGKV T0298 224 :LGERIGPLNVT 1dssG 218 :IPELDGKLTGM T0298 237 :QAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1dssG 231 :RVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1dssG 266 :PLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGI T0298 302 :ADPCQVNLWIVSDN 1dssG 300 :LSKTFVKVVSWYDN T0298 319 :GAALNAVLLGELLIKHY 1dssG 316 :GYSQRVIDLIKHMQKVD Number of specific fragments extracted= 20 number of extra gaps= 4 total=1129 Number of alignments=65 # 1dssG read from 1dssG/merged-good-all-a2m # found chain 1dssG in template set Warning: unaligning (T0298)L5 because first residue in template chain is (1dssG)S1 Warning: unaligning (T0298)C130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dssG)T150 Warning: unaligning (T0298)V132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dssG)T150 Warning: unaligning (T0298)C157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)H176 Warning: unaligning (T0298)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)H176 Warning: unaligning (T0298)F195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)N202 Warning: unaligning (T0298)N196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)N202 Warning: unaligning (T0298)L197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)I203 Warning: unaligning (T0298)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1dssG)F230 Warning: unaligning (T0298)I236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1dssG)F230 Warning: unaligning (T0298)V316 because of BadResidue code BAD_PEPTIDE in next template residue (1dssG)F315 Warning: unaligning (T0298)K318 because of BadResidue code BAD_PEPTIDE at template residue (1dssG)F315 T0298 6 :NVAVVGA 1dssG 2 :KIGINGF T0298 14 :GSVGEALVGLLDERDFPLHRLHL 1dssG 9 :GRIGRLVLRAALEMGAQVVAVND T0298 40 :AESA 1dssG 33 :PFIA T0298 44 :GQRMGFAES 1dssG 54 :KGEVKAEDG T0298 53 :SLRVGDVDSFDFSS 1dssG 68 :GKKITVFNEMKPEN T0298 67 :VGLAFFAAA 1dssG 89 :AEYIVESTG T0298 76 :AEVS 1dssG 102 :IEKA T0298 87 :RAAGCSVIDLSGAL 1dssG 109 :FKGGAKKVIISAPS T0298 103 :SVAPPVMVSVNAER 1dssG 123 :ADAPMFVCGVNLEK T0298 120 :Q 1dssG 137 :Y T0298 121 :AAPFLLSSP 1dssG 139 :KDMKVVSNA T0298 133 :AAELCEVLAPLLATLDCRQLNLTA 1dssG 151 :TNCLAPVAKVLHENFEIVEGLMTT T0298 159 :SVSSLGRE 1dssG 177 :AVTATQKT T0298 180 :NARPLEPRLFDRQIA 1dssG 186 :DGPSAKDWRGGRGAA T0298 198 :LAQVGA 1dssG 204 :IPSSTG T0298 216 :IFAEVQALLGERIGPLNVT 1dssG 210 :AAKAVGKVIPELDGKLTGM T0298 237 :QAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1dssG 231 :RVPTPNVSVVDLTVRLGKECSYDDIKAAMKAA T0298 269 :KGIEWVGEGD 1dssG 268 :QGVLGYTEDD T0298 281 :TVVGDALGQDETYVGR 1dssG 278 :VVSCDFTGDNRSSIFD T0298 297 :V 1dssG 297 :G T0298 300 :GQADPCQVNLWIVSDN 1dssG 298 :IQLSKTFVKVVSWYDN T0298 319 :GAALNAVLLGELLIKH 1dssG 316 :GYSQRVIDLIKHMQKV Number of specific fragments extracted= 22 number of extra gaps= 4 total=1151 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1brmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1brmA expands to /projects/compbio/data/pdb/1brm.pdb.gz 1brmA:# T0298 read from 1brmA/merged-good-all-a2m # 1brmA read from 1brmA/merged-good-all-a2m # adding 1brmA to template set # found chain 1brmA in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1brmA)M1 Warning: unaligning (T0298)G202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1brmA)W243 Warning: unaligning (T0298)R214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1brmA)W243 T0298 5 :LNVAVVGATGSVGEALVGLLDERD 1brmA 2 :KNVGFIGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD 1brmA 27 :FDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGC 1brmA 63 :LKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEP 1brmA 93 :YWIDAASSLRM T0298 103 :SVAPPVMVSVNAERLA 1brmA 105 :DDAIIILDPVNQDVIT T0298 119 :SQ 1brmA 125 :NG T0298 122 :APFLLSSPCAVAA 1brmA 127 :IRTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAEL 1brmA 140 :MLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHL T0298 179 :LNARPL 1brmA 190 :LATPSS T0298 185 :EPRLFDRQIAFNLLAQV 1brmA 214 :PVDNFGVPLAGSLIPWI T0298 215 :RIFAEVQALLG 1brmA 244 :KGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1brmA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH T0298 269 :KGIEWVGE 1brmA 300 :PWAKVVPN T0298 283 :VGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1brmA 318 :PAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 14 number of extra gaps= 0 total=1165 Number of alignments=67 # 1brmA read from 1brmA/merged-good-all-a2m # found chain 1brmA in template set Warning: unaligning (T0298)G202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1brmA)W243 Warning: unaligning (T0298)R214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1brmA)W243 T0298 1 :M 1brmA 1 :M T0298 5 :LNVAVVGATGSVGEALVGLLDERD 1brmA 2 :KNVGFIGWRGMVGSVLMQRMVEER T0298 29 :FPLHRLHLL 1brmA 27 :FDAIRPVFF T0298 39 :SAESAGQRMGFAESS 1brmA 36 :STSQLGQAAPSFGGT T0298 54 :LRVGDVDSFD 1brmA 52 :GTLQDAFDLE T0298 64 :FSSVGLAFFAAAAEVSRAHAERARAAGC 1brmA 63 :LKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEPS 1brmA 93 :YWIDAASSLRMK T0298 104 :VAPPVMVSVNAERLASQA 1brmA 106 :DAIIILDPVNQDVITDGL T0298 122 :A 1brmA 126 :G T0298 123 :PFLLSSPCAVAA 1brmA 128 :RTFVGGNCTVSL T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 1brmA 140 :MLMSLGGLFANDLVDWVSVATYQAASGGGARHMREL T0298 172 :ARQTAELLNARPLEPRL 1brmA 183 :YGHVADELATPSSAILD T0298 189 :FDRQIAFNLLAQV 1brmA 218 :FGVPLAGSLIPWI T0298 215 :RIFAEVQALLG 1brmA 244 :KGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1brmA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH T0298 269 :KGIEWVGE 1brmA 300 :PWAKVVPN T0298 284 :GDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1brmA 319 :AAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 17 number of extra gaps= 0 total=1182 Number of alignments=68 # 1brmA read from 1brmA/merged-good-all-a2m # found chain 1brmA in template set Warning: unaligning (T0298)G202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1brmA)W243 Warning: unaligning (T0298)R214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1brmA)W243 T0298 5 :LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM 1brmA 2 :KNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA T0298 48 :GFAESSLRVGDV 1brmA 46 :SFGGTTGTLQDA T0298 60 :DSFDFSSVGLAFFAAAAEVSRAHAERARAAGC 1brmA 59 :DLEALKALDIIVTCQGGDYTNEIYPKLRESGW T0298 92 :SVIDLSGALEPS 1brmA 93 :YWIDAASSLRMK T0298 104 :VAPPVMVSVNAERLASQ 1brmA 106 :DAIIILDPVNQDVITDG T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAEL 1brmA 125 :NGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHL T0298 179 :LNARPLEPRLFDRQIAFNLLAQV 1brmA 208 :TRSGELPVDNFGVPLAGSLIPWI T0298 215 :RIFAEVQALLG 1brmA 244 :KGQAETNKILN T0298 226 :ERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG 1brmA 256 :SSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN T0298 281 :TVVGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELL 1brmA 316 :LTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1192 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nwcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1nwcA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1nwcA/merged-good-all-a2m.gz for input Trying 1nwcA/merged-good-all-a2m Error: Couldn't open file 1nwcA/merged-good-all-a2m or 1nwcA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cf2O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cf2O expands to /projects/compbio/data/pdb/1cf2.pdb.gz 1cf2O:# T0298 read from 1cf2O/merged-good-all-a2m # 1cf2O read from 1cf2O/merged-good-all-a2m # adding 1cf2O to template set # found chain 1cf2O in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1cf2O)M1 T0298 5 :LNVAVVG 1cf2O 2 :KAVAING T0298 13 :TGSVGEALVGLLDE 1cf2O 9 :YGTVGKRVADAIAQ T0298 27 :RDFPLHRLHLLASAESAGQRMGFAESSLRVGDVD 1cf2O 24 :DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER T0298 61 :SFDFS 1cf2O 65 :GIEVA T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1cf2O 78 :EADIVIDCTPEGIGAKNLKMYKEKGIKAI T0298 96 :LSGALE 1cf2O 107 :FQGGEK T0298 114 :AERLA 1cf2O 113 :HEDIG T0298 119 :SQAAPFLLSSP 1cf2O 128 :ESYGKDYTRVV T0298 130 :CAVAA 1cf2O 140 :CNTTG T0298 136 :LCEVLAPLLATLDCRQLNLTACLS 1cf2O 145 :LCRTLKPLHDSFGIKKVRAVIVRR T0298 176 :AELLNARPLEPRLFDRQI 1cf2O 169 :GADPAQVSKGPINAIIPN T0298 205 :DAEGHS 1cf2O 187 :PPKLPS T0298 215 :RIFAEVQALLG 1cf2O 193 :HHGPDVKTVLD T0298 229 :GPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDY 1cf2O 204 :INIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAEDG T0298 285 :DALGQDETYVGRVR 1cf2O 269 :GRSRNDLFEIPVWR T0298 299 :AGQADPCQVNLWIVSDN 1cf2O 284 :SITVVDNEIYYMQAVHQ T0298 317 :RKGAALNAVLLGELLIK 1cf2O 301 :ESDIVPENVDAVRAILE Number of specific fragments extracted= 17 number of extra gaps= 0 total=1209 Number of alignments=70 # 1cf2O read from 1cf2O/merged-good-all-a2m # found chain 1cf2O in template set T0298 1 :M 1cf2O 1 :M T0298 5 :LNVAVVGA 1cf2O 2 :KAVAINGY T0298 14 :GSVGEALVGLLD 1cf2O 10 :GTVGKRVADAIA T0298 28 :DFPLHRLHLLASAE 1cf2O 22 :QQDDMKVIGVSKTR T0298 42 :SAGQRMGFAESS 1cf2O 37 :DFEARMALKKGY T0298 54 :LRVGDVDS 1cf2O 50 :LYVAIPER T0298 62 :FDFS 1cf2O 66 :IEVA T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1cf2O 78 :EADIVIDCTPEGIGAKNLKMYKEKGIKAI T0298 96 :LSGALEPSV 1cf2O 107 :FQGGEKHED T0298 105 :APPVMVSVNAERLA 1cf2O 117 :GLSFNSLSNYEESY T0298 122 :APFLLSSP 1cf2O 131 :GKDYTRVV T0298 130 :CAVAA 1cf2O 140 :CNTTG T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGRE 1cf2O 145 :LCRTLKPLHDSFGIKKVRAVIVRRGADPAQV T0298 173 :RQTAELLNARPL 1cf2O 178 :GPINAIIPNPPK T0298 205 :DAEGHSAI 1cf2O 190 :LPSHHGPD T0298 217 :FAEV 1cf2O 198 :VKTV T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDY 1cf2O 202 :LDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAEDG T0298 285 :DALGQDETYVGRVRAG 1cf2O 269 :GRSRNDLFEIPVWRES T0298 302 :ADPCQVNLWIVSDN 1cf2O 287 :VVDNEIYYMQAVHQ T0298 317 :RKGAALNAVLLGELLIKHYL 1cf2O 301 :ESDIVPENVDAVRAILEMEE Number of specific fragments extracted= 20 number of extra gaps= 0 total=1229 Number of alignments=71 # 1cf2O read from 1cf2O/merged-good-all-a2m # found chain 1cf2O in template set T0298 5 :LNVAVVG 1cf2O 2 :KAVAING T0298 13 :TGSVGEALVGLLDERDFPLHRLHLLASAESA 1cf2O 9 :YGTVGKRVADAIAQQDDMKVIGVSKTRPDFE T0298 44 :GQRMGFAES 1cf2O 47 :GYDLYVAIP T0298 53 :SLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSG 1cf2O 65 :GIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG T0298 100 :LEPSVAPPVMVS 1cf2O 111 :EKHEDIGLSFNS T0298 116 :RLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLS 1cf2O 125 :NYEESYGKDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRR T0298 162 :SL 1cf2O 169 :GA T0298 182 :RPLEPRLFDRQ 1cf2O 171 :DPAQVSKGPIN T0298 201 :VGAVDAEGHSAI 1cf2O 183 :IIPNPPKLPSHH T0298 218 :AEVQALL 1cf2O 195 :GPDVKTV T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVV 1cf2O 202 :LDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAEDGLTST T0298 284 :GDALGQDETYVGRVRA 1cf2O 268 :LGRSRNDLFEIPVWRE T0298 300 :GQADPCQVNLWIVSDNVRK 1cf2O 285 :ITVVDNEIYYMQAVHQESD T0298 320 :AALNAVLLGELLIK 1cf2O 304 :IVPENVDAVRAILE Number of specific fragments extracted= 14 number of extra gaps= 0 total=1243 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gaeO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1gaeO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1gaeO/merged-good-all-a2m.gz for input Trying 1gaeO/merged-good-all-a2m Error: Couldn't open file 1gaeO/merged-good-all-a2m or 1gaeO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rm3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1rm3A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1rm3A/merged-good-all-a2m.gz for input Trying 1rm3A/merged-good-all-a2m Error: Couldn't open file 1rm3A/merged-good-all-a2m or 1rm3A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gypA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gypA expands to /projects/compbio/data/pdb/1gyp.pdb.gz 1gypA:# T0298 read from 1gypA/merged-good-all-a2m # 1gypA read from 1gypA/merged-good-all-a2m # adding 1gypA to template set # found chain 1gypA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1gypA)A1 Warning: unaligning (T0298)F242 because of BadResidue code BAD_PEPTIDE in next template residue (1gypA)V255 Warning: unaligning (T0298)G243 because of BadResidue code BAD_PEPTIDE at template residue (1gypA)V255 Warning: unaligning (T0298)G300 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1gypA)P321 Warning: unaligning (T0298)Q301 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gypA)P321 T0298 4 :PLNVAVVG 1gypA 2 :PIKVGING T0298 13 :TGSVGEALVGLLDERDF 1gypA 10 :FGRIGRMVFQAICDQGL T0298 30 :PLHRLHL 1gypA 32 :DVVAVVD T0298 37 :LASAESAGQRMGFA 1gypA 40 :STNAEYFAYQMKHD T0298 51 :ESSLR 1gypA 82 :GHRIK T0298 56 :VGDVDSFDFS 1gypA 91 :QRNPADLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1gypA 103 :GVDYVIESTGLFTDKLKAEGHIKGGAKKV T0298 96 :LSGALEPSVAPPVMVSVNAERLASQ 1gypA 132 :VISAPASGGAKTIVMGVNQHEYSPA T0298 122 :APFLLSSP 1gypA 157 :SHHVVSNA T0298 130 :CAVAA 1gypA 166 :CTTNC T0298 136 :LCEVLAPLLAT 1gypA 171 :LAPIVHVLTKE T0298 147 :LDCRQLNLTACLSVSSL 1gypA 183 :FGIETGLMTTIHSYTAT T0298 176 :AELLNARPLEPRLFDRQIAFNLLA 1gypA 200 :QKTVDGVSLKDWRGGRAAAVNIIP T0298 205 :DAEGHSAIERRIFAEVQA 1gypA 224 :STTGAAKAVGMVIPSTKG T0298 230 :PLNVTCIQAPVF 1gypA 242 :KLTGMSFRVPTP T0298 244 :DSLSVTLQCAEPVDLAAVTRVLDAT 1gypA 256 :SVVDLTFRATRDTSIQEIDKAIKKA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGR 1gypA 284 :YMKGILGFTDEELVSADFINDNRSSVYD T0298 298 :RA 1gypA 318 :NN T0298 302 :ADPCQVNLWIVSDN 1gypA 322 :GEKRFFKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKH 1gypA 336 :EWAYSHRVVDLVRYMAAK Number of specific fragments extracted= 20 number of extra gaps= 2 total=1263 Number of alignments=73 # 1gypA read from 1gypA/merged-good-all-a2m # found chain 1gypA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1gypA)A1 Warning: unaligning (T0298)F242 because of BadResidue code BAD_PEPTIDE in next template residue (1gypA)V255 Warning: unaligning (T0298)G243 because of BadResidue code BAD_PEPTIDE at template residue (1gypA)V255 Warning: unaligning (T0298)G300 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1gypA)P321 Warning: unaligning (T0298)Q301 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gypA)P321 T0298 4 :PLNVAVVGA 1gypA 2 :PIKVGINGF T0298 14 :GSVGEALVGLLDERDF 1gypA 11 :GRIGRMVFQAICDQGL T0298 30 :PLHRLHLLASAE 1gypA 29 :TEIDVVAVVDMS T0298 42 :SAGQRMGFAE 1gypA 42 :NAEYFAYQMK T0298 52 :SSLR 1gypA 86 :KCVK T0298 56 :VGDVDSFDFS 1gypA 91 :QRNPADLPWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE 1gypA 103 :GVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPAS T0298 103 :SVAPPVMVSVNAERLASQ 1gypA 139 :GGAKTIVMGVNQHEYSPA T0298 122 :APFLLSSP 1gypA 157 :SHHVVSNA T0298 130 :CAVAA 1gypA 166 :CTTNC T0298 136 :LCEVLAPLLA 1gypA 171 :LAPIVHVLTK T0298 146 :TLDCRQLNLTACLSVSS 1gypA 182 :NFGIETGLMTTIHSYTA T0298 175 :TAELLNARPLEPRLFDRQIAFNLLA 1gypA 199 :TQKTVDGVSLKDWRGGRAAAVNIIP T0298 205 :DAEG 1gypA 224 :STTG T0298 213 :ERRIFAEV 1gypA 228 :AAKAVGMV T0298 224 :LGERIGPLNVTCIQAPVF 1gypA 236 :IPSTKGKLTGMSFRVPTP T0298 244 :DSLSVTLQCAEPVDLAAVTRVLDAT 1gypA 256 :SVVDLTFRATRDTSIQEIDKAIKKA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGR 1gypA 284 :YMKGILGFTDEELVSADFINDNRSSVYD T0298 298 :RA 1gypA 318 :NN T0298 302 :ADPCQVNLWIVSDN 1gypA 322 :GEKRFFKVVSWYDN T0298 317 :RKGAALNAVLLGELLIKHY 1gypA 336 :EWAYSHRVVDLVRYMAAKD Number of specific fragments extracted= 21 number of extra gaps= 2 total=1284 Number of alignments=74 # 1gypA read from 1gypA/merged-good-all-a2m # found chain 1gypA in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1gypA)A1 Warning: unaligning (T0298)F242 because of BadResidue code BAD_PEPTIDE in next template residue (1gypA)V255 Warning: unaligning (T0298)G243 because of BadResidue code BAD_PEPTIDE at template residue (1gypA)V255 Warning: unaligning (T0298)G300 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1gypA)P321 Warning: unaligning (T0298)Q301 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gypA)P321 T0298 4 :PLNVAVVGA 1gypA 2 :PIKVGINGF T0298 14 :GSVGEALVGLL 1gypA 11 :GRIGRMVFQAI T0298 27 :RDFPLHRLHLLASAESAGQR 1gypA 56 :HGRPKYTVEAVKSSPSVETA T0298 47 :MGFAESSLRVGDVDSFDFS 1gypA 78 :LVVNGHRIKCVKAQRNPAD T0298 66 :SVGLAFFAAA 1gypA 103 :GVDYVIESTG T0298 80 :RAHAERARAAGCSVIDLSGALE 1gypA 117 :KLKAEGHIKGGAKKVVISAPAS T0298 104 :VAPPVMVSVNAERLAS 1gypA 140 :GAKTIVMGVNQHEYSP T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLA 1gypA 156 :ASHHVVSNASCTTNCLAPIVHVLTK T0298 146 :TLDCRQLNLTACLSVSSLGRE 1gypA 182 :NFGIETGLMTTIHSYTATQKT T0298 180 :NARPLEPRLFDRQIAFNLLAQVGA 1gypA 204 :DGVSLKDWRGGRAAAVNIIPSTTG T0298 217 :FAEVQALLGER 1gypA 228 :AAKAVGMVIPS T0298 228 :IGPLNVTCIQAPVF 1gypA 240 :KGKLTGMSFRVPTP T0298 244 :DSLSVTLQCAEPVDLAAVTRVLDAT 1gypA 256 :SVVDLTFRATRDTSIQEIDKAIKKA T0298 269 :KGIEWVG 1gypA 287 :GILGFTD T0298 279 :YPTVVGDALGQDETYVG 1gypA 294 :EELVSADFINDNRSSVY T0298 299 :A 1gypA 319 :N T0298 302 :ADPCQVNLWIVSDNVRK 1gypA 322 :GEKRFFKVVSWYDNEWA T0298 320 :AALNAVLLGELLIKH 1gypA 339 :YSHRVVDLVRYMAAK Number of specific fragments extracted= 18 number of extra gaps= 2 total=1302 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3gpdG/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/3gpdG/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/3gpdG/merged-good-all-a2m.gz for input Trying 3gpdG/merged-good-all-a2m Error: Couldn't open file 3gpdG/merged-good-all-a2m or 3gpdG/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rm5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1rm5A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1rm5A/merged-good-all-a2m.gz for input Trying 1rm5A/merged-good-all-a2m Error: Couldn't open file 1rm5A/merged-good-all-a2m or 1rm5A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jn0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1jn0A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1jn0A/merged-good-all-a2m.gz for input Trying 1jn0A/merged-good-all-a2m Error: Couldn't open file 1jn0A/merged-good-all-a2m or 1jn0A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ys4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ys4A expands to /projects/compbio/data/pdb/1ys4.pdb.gz 1ys4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0298 read from 1ys4A/merged-good-all-a2m # 1ys4A read from 1ys4A/merged-good-all-a2m # adding 1ys4A to template set # found chain 1ys4A in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1ys4A)M7 Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ys4A)I127 T0298 4 :PLNVAVVGATGSVGEALVGLLD 1ys4A 8 :KIKVGVLGATGSVGQRFVQLLA T0298 28 :DFPLHRLHLL 1ys4A 30 :DHPMFELTAL T0298 38 :ASAESAGQRMGFA 1ys4A 41 :ASERSAGKKYKDA T0298 51 :ESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPS 1ys4A 68 :DMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRME T0298 104 :VAPP 1ys4A 122 :DVPL T0298 110 :VSVNAERLA 1ys4A 128 :PEVNADHLE T0298 120 :QAAPFLLSSP 1ys4A 146 :GWDGAIITNP T0298 130 :CAVAA 1ys4A 157 :CSTIC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREG 1ys4A 162 :AVITLKPIMDKFGLEAVFIATMQAVSGAGYNG T0298 181 :ARP 1ys4A 194 :VPS T0298 187 :RLFDRQ 1ys4A 197 :MAILDN T0298 205 :DAEGHSAIERRIFAEVQALLG 1ys4A 203 :LIPFIKNEEEKMQTESLKLLG T0298 226 :ER 1ys4A 227 :DG T0298 228 :IGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1ys4A 234 :NFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKF T0298 269 :KGIEWVGEGDYPTVV 1ys4A 287 :KPIVIREEIDRPQPR T0298 284 :GDALGQDETYVGRVRAGQADP 1ys4A 304 :RNEGNGMSIVVGRIRKDPIFD T0298 307 :VNLWIVSDNVRKGAALNAVLLGELLIKHYL 1ys4A 325 :VKYTALEHNTIRGAAGASVLNAEYFVKKYI Number of specific fragments extracted= 17 number of extra gaps= 1 total=1319 Number of alignments=76 # 1ys4A read from 1ys4A/merged-good-all-a2m # found chain 1ys4A in template set Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ys4A)I127 T0298 1 :M 1ys4A 7 :M T0298 4 :PLNVAVVGATGSVGEALVGLLD 1ys4A 8 :KIKVGVLGATGSVGQRFVQLLA T0298 28 :DFPLHRLHLL 1ys4A 30 :DHPMFELTAL T0298 38 :ASAESAGQRMGFAE 1ys4A 41 :ASERSAGKKYKDAC T0298 52 :SSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPS 1ys4A 69 :MVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRME T0298 104 :VAPP 1ys4A 122 :DVPL T0298 110 :VSVNAERLA 1ys4A 128 :PEVNADHLE T0298 119 :S 1ys4A 143 :E T0298 120 :QAAPFLLSSP 1ys4A 146 :GWDGAIITNP T0298 130 :CAVAA 1ys4A 157 :CSTIC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSLGREG 1ys4A 162 :AVITLKPIMDKFGLEAVFIATMQAVSGAGYNG T0298 168 :VKELARQ 1ys4A 196 :SMAILDN T0298 178 :LLN 1ys4A 203 :LIP T0298 205 :DAEGH 1ys4A 206 :FIKNE T0298 213 :ERRIFAEVQALLGER 1ys4A 211 :EEKMQTESLKLLGTL T0298 228 :IGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1ys4A 234 :NFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKF T0298 269 :KGIEWVGEGDYPTVVGDAL 1ys4A 287 :KPIVIREEIDRPQPRLDRN T0298 288 :GQDETYVGRVRAGQADP 1ys4A 308 :NGMSIVVGRIRKDPIFD T0298 307 :VNLWIVSDNVRKGAALNAVLLGELLIKHY 1ys4A 325 :VKYTALEHNTIRGAAGASVLNAEYFVKKY Number of specific fragments extracted= 19 number of extra gaps= 1 total=1338 Number of alignments=77 # 1ys4A read from 1ys4A/merged-good-all-a2m # found chain 1ys4A in template set Warning: unaligning (T0298)Q3 because first residue in template chain is (1ys4A)M7 Warning: unaligning (T0298)V108 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 Warning: unaligning (T0298)M109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ys4A)I127 T0298 4 :PLNVAVVGATGSVGEALVGLLDERDFPLHRLHL 1ys4A 8 :KIKVGVLGATGSVGQRFVQLLADHPMFELTALA T0298 38 :ASAESAGQR 1ys4A 41 :ASERSAGKK T0298 47 :MGFAES 1ys4A 56 :WFQDRD T0298 53 :SLRVGDVD 1ys4A 68 :DMVVIPTD T0298 61 :SFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPS 1ys4A 78 :HEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRME T0298 104 :VAPP 1ys4A 122 :DVPL T0298 110 :VSVNAERLASQ 1ys4A 128 :PEVNADHLELI T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREG 1ys4A 147 :WDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNG T0298 184 :LEPRLFD 1ys4A 194 :VPSMAIL T0298 195 :FNLLAQV 1ys4A 201 :DNLIPFI T0298 210 :SAIERRIFAEVQALLG 1ys4A 208 :KNEEEKMQTESLKLLG T0298 226 :ER 1ys4A 227 :DG T0298 228 :IGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKG 1ys4A 234 :NFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDP T0298 271 :IEWVGEGDYPTVV 1ys4A 289 :IVIREEIDRPQPR T0298 284 :GDALGQDETYVGRVRAGQ 1ys4A 304 :RNEGNGMSIVVGRIRKDP T0298 304 :PCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL 1ys4A 322 :IFDVKYTALEHNTIRGAAGASVLNAEYFVKKYI Number of specific fragments extracted= 16 number of extra gaps= 1 total=1354 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 4gpd1/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/4gpd1/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/4gpd1/merged-good-all-a2m.gz for input Trying 4gpd1/merged-good-all-a2m Error: Couldn't open file 4gpd1/merged-good-all-a2m or 4gpd1/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 3dbvO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/3dbvO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/3dbvO/merged-good-all-a2m.gz for input Trying 3dbvO/merged-good-all-a2m Error: Couldn't open file 3dbvO/merged-good-all-a2m or 3dbvO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ozaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1ozaA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1ozaA/merged-good-all-a2m.gz for input Trying 1ozaA/merged-good-all-a2m Error: Couldn't open file 1ozaA/merged-good-all-a2m or 1ozaA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pqpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1pqpA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1pqpA/merged-good-all-a2m.gz for input Trying 1pqpA/merged-good-all-a2m Error: Couldn't open file 1pqpA/merged-good-all-a2m or 1pqpA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nqoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1nqoA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1nqoA/merged-good-all-a2m.gz for input Trying 1nqoA/merged-good-all-a2m Error: Couldn't open file 1nqoA/merged-good-all-a2m or 1nqoA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g17A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/2g17A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/2g17A/merged-good-all-a2m.gz for input Trying 2g17A/merged-good-all-a2m Error: Couldn't open file 2g17A/merged-good-all-a2m or 2g17A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cerA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1cerA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1cerA/merged-good-all-a2m.gz for input Trying 1cerA/merged-good-all-a2m Error: Couldn't open file 1cerA/merged-good-all-a2m or 1cerA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vknA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0298 read from 1vknA/merged-good-all-a2m # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set Warning: unaligning (T0298)Q3 because first residue in template chain is (1vknA)H0 T0298 4 :PLNVAVVGATGSVGEALVGLLD 1vknA 1 :MIRAGIIGATGYTGLELVRLLK T0298 28 :DFPLHRLHLLASAESAGQRMGFAESSLRVGD 1vknA 23 :NHPEAKITYLSSRTYAGKKLEEIFPSTLENS T0298 62 :FDFS 1vknA 56 :SEFD T0298 66 :SVGLAFFAAAAEVSRAHA 1vknA 66 :NCDVLFTALPAGASYDLV T0298 89 :A 1vknA 84 :R T0298 90 :GCSVIDLSGALEPSV 1vknA 88 :GVKIIDLGADFRFDD T0298 105 :APPVMVSVNAERLA 1vknA 122 :RVYGLPELHREEIK T0298 122 :APFLLSSP 1vknA 136 :NAQVVGNP T0298 130 :CAVAA 1vknA 145 :CYPTS T0298 136 :LCEVLAPLLAT 1vknA 150 :VILALAPALKH T0298 147 :LDCRQLNLTACLSVSSLGREG 1vknA 163 :VDPETILVDAKSGVSGAGRKE T0298 176 :AELLNARPLEPRLFDRQI 1vknA 184 :KVDYLFSEVNESLRPYNV T0298 205 :DAEGHSAIERRIFAEVQA 1vknA 202 :AKHRHVPEMEQELGKISG T0298 227 :RIGPLNVTCIQAPVFFGDSLSVTLQCAE 1vknA 220 :KKVNVVFTPHLVPMTRGILSTIYVKTDK T0298 257 :DLAAVTRVLDAT 1vknA 248 :SLEEIHEAYLEF T0298 269 :KGIEWVGEGDYPTVV 1vknA 264 :PFVHVLPMGIYPSTK T0298 285 :DALGQDETYVGR 1vknA 279 :WCYGSNHVFIGM T0298 299 :AGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 1vknA 291 :QMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFG Number of specific fragments extracted= 18 number of extra gaps= 0 total=1372 Number of alignments=79 # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set Warning: unaligning (T0298)Q3 because first residue in template chain is (1vknA)H0 T0298 4 :PLNVAVVGATGSVGEALVGLLD 1vknA 1 :MIRAGIIGATGYTGLELVRLLK T0298 28 :DFPLHRLHLLASAESAGQRMGFAESSLR 1vknA 23 :NHPEAKITYLSSRTYAGKKLEEIFPSTL T0298 56 :VG 1vknA 55 :LS T0298 63 :DFS 1vknA 57 :EFD T0298 66 :SVGLAFFAAAAEVSRAHA 1vknA 66 :NCDVLFTALPAGASYDLV T0298 90 :GCSVIDLSGALEPSV 1vknA 88 :GVKIIDLGADFRFDD T0298 105 :APPVMVSVNAERLA 1vknA 122 :RVYGLPELHREEIK T0298 122 :APFLLSSP 1vknA 136 :NAQVVGNP T0298 130 :CAVAA 1vknA 145 :CYPTS T0298 136 :LCEVLAPLLAT 1vknA 150 :VILALAPALKH T0298 147 :LDCRQLNLTACLSVSSLGRE 1vknA 163 :VDPETILVDAKSGVSGAGRK T0298 167 :GVKELARQTAELLNARPL 1vknA 184 :KVDYLFSEVNESLRPYNV T0298 205 :DAEGHSAIERRIFAE 1vknA 202 :AKHRHVPEMEQELGK T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAE 1vknA 217 :ISGKKVNVVFTPHLVPMTRGILSTIYVKTDK T0298 257 :DLAAVTRVLDAT 1vknA 248 :SLEEIHEAYLEF T0298 269 :KGIEWVGEGDYPTVVG 1vknA 264 :PFVHVLPMGIYPSTKW T0298 286 :ALGQDETYVG 1vknA 280 :CYGSNHVFIG T0298 297 :VRAG 1vknA 290 :MQME T0298 302 :ADPCQVNLWIVSDNVRKGAALNAVLLGELLIKHYL 1vknA 294 :ERTNTLILMSAIDNLVKGASGQAVQNMNIMFGLDE Number of specific fragments extracted= 19 number of extra gaps= 0 total=1391 Number of alignments=80 # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set Warning: unaligning (T0298)Q3 because first residue in template chain is (1vknA)H0 T0298 4 :PLNVAVVGATGSVGEALVGLLDERD 1vknA 1 :MIRAGIIGATGYTGLELVRLLKNHP T0298 31 :LHRLHLLASAESAGQR 1vknA 26 :EAKITYLSSRTYAGKK T0298 49 :FAES 1vknA 46 :FPST T0298 53 :SLRVGDVDSFDFS 1vknA 52 :NSILSEFDPEKVS T0298 66 :SVGLAFFAAAAEVSRAHA 1vknA 66 :NCDVLFTALPAGASYDLV T0298 90 :GCSVIDLSGALEPSV 1vknA 88 :GVKIIDLGADFRFDD T0298 109 :MVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLL 1vknA 123 :VYGLPELHREEIKNAQVVGNPGCYPTSVILALAPAL T0298 145 :ATLDCRQLNLTACLSVSSLGRE 1vknA 161 :NLVDPETILVDAKSGVSGAGRK T0298 184 :LEPRLFDRQI 1vknA 183 :EKVDYLFSEV T0298 202 :GAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQC 1vknA 195 :SLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKT T0298 255 :PVDLAAVTRVLDAT 1vknA 246 :DKSLEEIHEAYLEF T0298 270 :G 1vknA 261 :K T0298 271 :IEWVGEGDYPTVVGDALGQDETYVGR 1vknA 265 :FVHVLPMGIYPSTKWCYGSNHVFIGM T0298 299 :AGQADPCQVNLWIVSDNVRKGAALNAVLLGELLI 1vknA 291 :QMEERTNTLILMSAIDNLVKGASGQAVQNMNIMF Number of specific fragments extracted= 14 number of extra gaps= 0 total=1405 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u8fO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1u8fO expands to /projects/compbio/data/pdb/1u8f.pdb.gz 1u8fO:Skipped atom 702, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 714, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 716, because occupancy 0.500 <= existing 0.500 in 1u8fO Skipped atom 718, because occupancy 0.500 <= existing 0.500 in 1u8fO # T0298 read from 1u8fO/merged-good-all-a2m # 1u8fO read from 1u8fO/merged-good-all-a2m # adding 1u8fO to template set # found chain 1u8fO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1u8fO)K3 T0298 5 :LNVAVVG 1u8fO 4 :VKVGVNG T0298 13 :TGSVGEALVGLLDER 1u8fO 11 :FGRIGRLVTRAAFNS T0298 28 :DFPLHRLHL 1u8fO 27 :KVDIVAIND T0298 37 :LASAESAGQRMGFA 1u8fO 37 :FIDLNYMVYMFQYD T0298 51 :ESSLRVGDVDSFDFS 1u8fO 74 :ITIFQERDPSKIKWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVI 1u8fO 91 :GAEYVVESTGVFTTMEKAGAHLQGGAKRV T0298 96 :LSGALE 1u8fO 120 :IISAPS T0298 103 :SVAPPVMVSVNAERLAS 1u8fO 126 :ADAPMFVMGVNHEKYDN T0298 122 :APFLLSSP 1u8fO 143 :SLKIISNA T0298 130 :CAVAA 1u8fO 152 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSSL 1u8fO 157 :LAPLAKVIHDNFGIVEGLMTTVHAITAT T0298 176 :AELLNARPLEPRLFDRQIAFNLLA 1u8fO 185 :QKTVDGPSGKLWRDGRGALQNIIP T0298 205 :DAEGHSAIERRIFAEVQA 1u8fO 209 :ASTGAAKAVGKVIPELNG T0298 230 :PLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1u8fO 227 :KLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQAD 1u8fO 269 :PLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIAL T0298 304 :PCQVNLWIVSDN 1u8fO 305 :DHFVKLISWYDN T0298 317 :RKGAALNAVLLGELLIKH 1u8fO 317 :EFGYSNRVVDLMAHMASK Number of specific fragments extracted= 17 number of extra gaps= 0 total=1422 Number of alignments=82 # 1u8fO read from 1u8fO/merged-good-all-a2m # found chain 1u8fO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1u8fO)K3 Warning: unaligning (T0298)Y335 because last residue in template chain is (1u8fO)E335 T0298 5 :LNVAVVGA 1u8fO 4 :VKVGVNGF T0298 14 :GSVGEALVGLLDERD 1u8fO 12 :GRIGRLVTRAAFNSG T0298 31 :LHRLHLLASAE 1u8fO 27 :KVDIVAINDPF T0298 42 :SAGQRMGFAE 1u8fO 39 :DLNYMVYMFQ T0298 52 :SSLRVGDVDSFDFS 1u8fO 75 :TIFQERDPSKIKWG T0298 66 :SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGA 1u8fO 91 :GAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP T0298 102 :PSVAPPVMVSVNAERLAS 1u8fO 125 :SADAPMFVMGVNHEKYDN T0298 122 :APFLLSSP 1u8fO 143 :SLKIISNA T0298 130 :CAVAA 1u8fO 152 :CTTNC T0298 136 :LCEVLAPLLATLDCRQLNLTACLSVSS 1u8fO 157 :LAPLAKVIHDNFGIVEGLMTTVHAITA T0298 175 :TAELLNARPLEPRLFDRQIAFNLLA 1u8fO 184 :TQKTVDGPSGKLWRDGRGALQNIIP T0298 205 :DAEG 1u8fO 209 :ASTG T0298 213 :ERRIFAEV 1u8fO 213 :AAKAVGKV T0298 224 :LGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1u8fO 221 :IPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQA T0298 269 :KGIEWVGEGDYPTVVGDALGQDETYVGRVRAGQ 1u8fO 269 :PLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGI T0298 302 :ADPCQVNLWIVSDN 1u8fO 303 :LNDHFVKLISWYDN T0298 317 :RKGAALNAVLLGELLIKH 1u8fO 317 :EFGYSNRVVDLMAHMASK Number of specific fragments extracted= 17 number of extra gaps= 0 total=1439 Number of alignments=83 # 1u8fO read from 1u8fO/merged-good-all-a2m # found chain 1u8fO in template set Warning: unaligning (T0298)P4 because first residue in template chain is (1u8fO)K3 T0298 5 :LNVAVVGA 1u8fO 4 :VKVGVNGF T0298 14 :GSVGEALVGLLDERDFPLHRLHLLASAESA 1u8fO 12 :GRIGRLVTRAAFNSGKVDIVAINDPFIDLN T0298 44 :GQRMGFAES 1u8fO 57 :HGTVKAENG T0298 53 :SLRVGDVDSFD 1u8fO 73 :PITIFQERDPS T0298 66 :S 1u8fO 84 :K T0298 67 :VGLAFFAAA 1u8fO 92 :AEYVVESTG T0298 76 :AEVSR 1u8fO 105 :MEKAG T0298 85 :RARAAGCSVIDLSGAL 1u8fO 110 :AHLQGGAKRVIISAPS T0298 103 :SVAPPVMVSVNAER 1u8fO 126 :ADAPMFVMGVNHEK T0298 120 :Q 1u8fO 140 :Y T0298 121 :AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGRE 1u8fO 142 :NSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKT T0298 180 :NARPLEPRLFDRQIAFNLLAQVGAVDAE 1u8fO 189 :DGPSGKLWRDGRGALQNIIPASTGAAKA T0298 220 :VQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT 1u8fO 217 :VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQA T0298 269 :KGIEWVGEG 1u8fO 271 :KGILGYTEH T0298 281 :TVVGDALGQDETYVGR 1u8fO 280 :QVVSSDFNSDTHSSTF T0298 297 :V 1u8fO 300 :G T0298 300 :GQADPCQVNLWIVSDNV 1u8fO 301 :IALNDHFVKLISWYDNE T0298 318 :KGAALNAVLLGELLIKH 1u8fO 318 :FGYSNRVVDLMAHMASK Number of specific fragments extracted= 18 number of extra gaps= 0 total=1457 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ps8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1ps8A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1ps8A/merged-good-all-a2m.gz for input Trying 1ps8A/merged-good-all-a2m Error: Couldn't open file 1ps8A/merged-good-all-a2m or 1ps8A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hdgO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1hdgO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1hdgO/merged-good-all-a2m.gz for input Trying 1hdgO/merged-good-all-a2m Error: Couldn't open file 1hdgO/merged-good-all-a2m or 1hdgO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pr3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298/1pr3A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0298/1pr3A/merged-good-all-a2m.gz for input Trying 1pr3A/merged-good-all-a2m Error: Couldn't open file 1pr3A/merged-good-all-a2m or 1pr3A/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0298//projects/compbio/experiments/protein-predict/casp7/T0298/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0298//projects/compbio/experiments/protein-predict/casp7/T0298/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0298/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0298/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)A70.CB) [> 2.8506 = 4.7509 < 6.1762] w=1.0000 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)L69.CB) [> 4.3518 = 7.2529 < 9.4288] w=1.0000 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)V21.CB) [> 3.8042 = 6.3404 < 8.2425] w=0.9874 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)V93.CB) [> 3.5894 = 5.9823 < 7.7770] w=0.9747 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)I94.CB) [> 3.5806 = 5.9676 < 7.7579] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)A70.CB) [> 4.4450 = 7.4083 < 9.6308] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)L69.CB) [> 3.0148 = 5.0247 < 6.5321] w=0.9621 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)F71.CB) [> 4.2898 = 7.1497 < 9.2946] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)F71.CB) [> 3.0447 = 5.0744 < 6.5967] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)A70.CB) [> 3.6574 = 6.0957 < 7.9245] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)F71.CB) [> 4.1606 = 6.9343 < 9.0146] w=0.9621 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)F72.CB) [> 2.7920 = 4.6533 < 6.0493] w=0.9621 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)V67.CB) [> 2.4315 = 4.0525 < 5.2683] w=0.9621 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)A73.CB) [> 2.6344 = 4.3906 < 5.7078] w=0.9583 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)A73.CB) [> 2.6743 = 4.4571 < 5.7942] w=0.9583 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)A74.CB) [> 2.8972 = 4.8287 < 6.2773] w=0.9583 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)A73.CB) [> 2.9285 = 4.8808 < 6.3450] w=0.9583 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)A74.CB) [> 3.3138 = 5.5229 < 7.1798] w=0.9583 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)A73.CB) [> 3.8893 = 6.4821 < 8.4268] w=0.9583 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)H35.CB) [> 3.8036 = 6.3393 < 8.2411] w=0.9500 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)S92.CB) [> 3.3618 = 5.6031 < 7.2840] w=0.9494 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)F71.CB) [> 3.5500 = 5.9167 < 7.6917] w=0.9494 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)A73.CB) [> 4.0136 = 6.6893 < 8.6961] w=0.9468 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)A73.CB) [> 3.9239 = 6.5399 < 8.5019] w=0.9456 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L34.CB) [> 3.8299 = 6.3832 < 8.2982] w=0.9247 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)G328.CA) [> 3.6011 = 6.0018 < 7.8024] w=0.9241 to align # Constraint # added constraint: constraint((T0298)L23.CB, (T0298)V325.CB) [> 3.1142 = 5.1903 < 6.7473] w=0.9241 to align # Constraint # added constraint: constraint((T0298)A19.CB, (T0298)A321.CB) [> 2.4732 = 4.1221 < 5.3587] w=0.9241 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)I94.CB) [> 4.2041 = 7.0068 < 9.1088] w=0.9241 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)I94.CB) [> 3.7885 = 6.3142 < 8.2085] w=0.9241 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)F71.CB) [> 3.8655 = 6.4425 < 8.3753] w=0.9241 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)G68.CA) [> 4.2459 = 7.0765 < 9.1994] w=0.9241 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)V67.CB) [> 3.9122 = 6.5204 < 8.4765] w=0.9241 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)G68.CA) [> 3.1203 = 5.2006 < 6.7607] w=0.9241 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)V67.CB) [> 3.0769 = 5.1282 < 6.6666] w=0.9241 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)F124.CB) [> 3.6929 = 6.1548 < 8.0012] w=0.9121 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)L96.CB) [> 3.5842 = 5.9736 < 7.7657] w=0.9121 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)A320.CB) [> 3.8029 = 6.3382 < 8.2396] w=0.9115 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)A321.CB) [> 3.6956 = 6.1594 < 8.0072] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)A321.CB) [> 2.8195 = 4.6992 < 6.1089] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)A324.CB) [> 3.3939 = 5.6566 < 7.3536] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)V325.CB) [> 4.0139 = 6.6898 < 8.6968] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L23.CB, (T0298)A321.CB) [> 3.0236 = 5.0392 < 6.5510] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L23.CB, (T0298)L322.CB) [> 3.4299 = 5.7164 < 7.4314] w=0.9115 to align # Constraint # added constraint: constraint((T0298)L24.CB, (T0298)V325.CB) [> 3.5764 = 5.9607 < 7.7489] w=0.9115 to align # Constraint # added constraint: constraint((T0298)G68.CA, (T0298)S92.CB) [> 3.1861 = 5.3102 < 6.9032] w=0.9115 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)A73.CB) [> 3.9183 = 6.5304 < 8.4896] w=0.9089 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)A70.CB) [> 4.5608 = 7.6013 < 9.8816] w=0.9089 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)V93.CB) [> 3.5614 = 5.9357 < 7.7164] w=0.8988 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)T234.CB) [> 4.3872 = 7.3121 < 9.5057] w=0.8929 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)V233.CB) [> 4.0163 = 6.6938 < 8.7020] w=0.8929 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)L69.CB) [> 4.3464 = 7.2441 < 9.4173] w=0.8879 to align # Constraint # added constraint: constraint((T0298)S92.CB, (T0298)F124.CB) [> 3.9523 = 6.5872 < 8.5633] w=0.8868 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)S245.CB) [> 4.2236 = 7.0393 < 9.1511] w=0.8866 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)A324.CB) [> 3.5071 = 5.8452 < 7.5988] w=0.8862 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L20.CB) [> 3.5572 = 5.9287 < 7.7073] w=0.8862 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)L331.CB) [> 4.0074 = 6.6790 < 8.6827] w=0.8824 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)N232.CB) [> 3.4237 = 5.7062 < 7.4180] w=0.8676 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)C91.CB) [> 2.9657 = 4.9428 < 6.4257] w=0.8609 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)C91.CB) [> 4.1004 = 6.8340 < 8.8842] w=0.8609 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)S66.CB) [> 3.5965 = 5.9942 < 7.7924] w=0.8609 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)L250.CB) [> 2.6279 = 4.3798 < 5.6937] w=0.8575 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)L246.CB) [> 3.1338 = 5.2231 < 6.7900] w=0.8575 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)T234.CB) [> 3.2610 = 5.4350 < 7.0655] w=0.8550 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)T249.CB) [> 2.9383 = 4.8971 < 6.3662] w=0.8525 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)T249.CB) [> 4.0911 = 6.8185 < 8.8640] w=0.8525 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)V248.CB) [> 3.7646 = 6.2744 < 8.1566] w=0.8525 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)L125.CB) [> 3.9482 = 6.5804 < 8.5545] w=0.8488 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)H32.CB) [> 3.4610 = 5.7684 < 7.4989] w=0.8488 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)D244.CB) [> 3.6991 = 6.1652 < 8.0148] w=0.8486 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)L69.CB) [> 3.7299 = 6.2165 < 8.0815] w=0.8482 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)S97.CB) [> 3.7058 = 6.1764 < 8.0293] w=0.8450 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)F72.CB) [> 4.3949 = 7.3248 < 9.5222] w=0.8368 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)L246.CB) [> 3.4805 = 5.8008 < 7.5410] w=0.8360 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)D244.CB) [> 3.5337 = 5.8895 < 7.6564] w=0.8347 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)L231.CB) [> 2.7815 = 4.6357 < 6.0265] w=0.8335 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)N232.CB) [> 4.3731 = 7.2885 < 9.4750] w=0.8297 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)S247.CB) [> 2.7737 = 4.6228 < 6.0096] w=0.8272 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)L231.CB) [> 3.9797 = 6.6329 < 8.6228] w=0.8259 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)L126.CB) [> 3.9648 = 6.6079 < 8.5903] w=0.8235 to align # Constraint # added constraint: constraint((T0298)G68.CA, (T0298)C91.CB) [> 3.2471 = 5.4118 < 7.0353] w=0.8229 to align # Constraint # added constraint: constraint((T0298)V67.CB, (T0298)C91.CB) [> 3.4728 = 5.7880 < 7.5244] w=0.8229 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)V248.CB) [> 3.0595 = 5.0992 < 6.6290] w=0.8196 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)T249.CB) [> 4.4930 = 7.4884 < 9.7349] w=0.8196 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)L250.CB) [> 3.9814 = 6.6357 < 8.6264] w=0.8183 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)N323.CB) [> 3.5786 = 5.9643 < 7.7536] w=0.8158 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)V248.CB) [> 4.5083 = 7.5139 < 9.7681] w=0.8145 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)L246.CB) [> 4.4765 = 7.4609 < 9.6992] w=0.8145 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)S247.CB) [> 4.0702 = 6.7837 < 8.8188] w=0.8145 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)L246.CB) [> 3.5879 = 5.9798 < 7.7737] w=0.8145 to align # Constraint # added constraint: constraint((T0298)P142.CB, (T0298)L265.CB) [> 3.3967 = 5.6611 < 7.3594] w=0.8094 to align # Constraint # added constraint: constraint((T0298)P142.CB, (T0298)T268.CB) [> 2.6122 = 4.3536 < 5.6597] w=0.8094 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)D244.CB) [> 4.0748 = 6.7913 < 8.8287] w=0.8019 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)D244.CB) [> 2.9744 = 4.9573 < 6.4445] w=0.8019 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)L34.CB) [> 4.0687 = 6.7812 < 8.8156] w=0.8007 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)V233.CB) [> 2.4800 = 4.1334 < 5.3734] w=0.7994 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)A86.CB) [> 3.1122 = 5.1870 < 6.7431] w=0.7976 to align # Constraint # added constraint: constraint((T0298)D244.CB, (T0298)N315.CB) [> 2.8498 = 4.7497 < 6.1746] w=0.7968 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)V264.CB) [> 4.2508 = 7.0847 < 9.2102] w=0.7968 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)V261.CB) [> 4.1942 = 6.9903 < 9.0874] w=0.7968 to align # Constraint # added constraint: constraint((T0298)P142.CB, (T0298)V264.CB) [> 3.2097 = 5.3496 < 6.9545] w=0.7968 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)L250.CB) [> 3.2782 = 5.4637 < 7.1028] w=0.7968 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)C149.CB) [> 4.0348 = 6.7246 < 8.7420] w=0.7968 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)V248.CB) [> 4.1039 = 6.8399 < 8.8918] w=0.7930 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)C235.CB) [> 2.8784 = 4.7973 < 6.2364] w=0.7917 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)C235.CB) [> 3.4743 = 5.7904 < 7.5276] w=0.7879 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)A321.CB) [> 4.2885 = 7.1476 < 9.2918] w=0.7862 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)S245.CB) [> 2.8700 = 4.7832 < 6.2182] w=0.7854 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)N315.CB) [> 3.6674 = 6.1123 < 7.9460] w=0.7841 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)F241.CB) [> 3.4930 = 5.8217 < 7.5682] w=0.7841 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)A238.CB) [> 4.2107 = 7.0179 < 9.1232] w=0.7841 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)L154.CB) [> 3.7041 = 6.1735 < 8.0256] w=0.7841 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)F71.CB) [> 4.2585 = 7.0976 < 9.2268] w=0.7824 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)I311.CB) [> 3.1290 = 5.2150 < 6.7794] w=0.7753 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)I311.CB) [> 3.2666 = 5.4443 < 7.0775] w=0.7753 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)I311.CB) [> 3.4028 = 5.6714 < 7.3728] w=0.7753 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)I236.CB) [> 4.1805 = 6.9674 < 9.0577] w=0.7741 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)Q251.CB) [> 2.8132 = 4.6887 < 6.0953] w=0.7727 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)I94.CB) [> 3.5876 = 5.9794 < 7.7732] w=0.7724 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)V312.CB) [> 3.1602 = 5.2670 < 6.8471] w=0.7715 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)W310.CB) [> 3.3975 = 5.6626 < 7.3613] w=0.7715 to align # Constraint # added constraint: constraint((T0298)V248.CB, (T0298)L309.CB) [> 2.8797 = 4.7994 < 6.2393] w=0.7715 to align # Constraint # added constraint: constraint((T0298)V248.CB, (T0298)I311.CB) [> 4.3299 = 7.2165 < 9.3814] w=0.7715 to align # Constraint # added constraint: constraint((T0298)D148.CB, (T0298)C252.CB) [> 3.6842 = 6.1403 < 7.9824] w=0.7715 to align # Constraint # added constraint: constraint((T0298)Q151.CB, (T0298)L250.CB) [> 4.2488 = 7.0814 < 9.2058] w=0.7715 to align # Constraint # added constraint: constraint((T0298)G98.CA, (T0298)S127.CB) [> 3.8065 = 6.3442 < 8.2474] w=0.7715 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)P230.CB) [> 4.0302 = 6.7171 < 8.7322] w=0.7715 to align # Constraint # added constraint: constraint((T0298)Q151.CB, (T0298)P230.CB) [> 3.1188 = 5.1979 < 6.7573] w=0.7715 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)C252.CB) [> 4.0124 = 6.6873 < 8.6935] w=0.7665 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)A253.CB) [> 3.3054 = 5.5091 < 7.1618] w=0.7665 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)I236.CB) [> 4.0746 = 6.7909 < 8.8282] w=0.7664 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)I236.CB) [> 3.1816 = 5.3027 < 6.8935] w=0.7664 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)S128.CB) [> 3.6419 = 6.0698 < 7.8908] w=0.7640 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)C252.CB) [> 3.8477 = 6.4129 < 8.3368] w=0.7627 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)V240.CB) [> 2.5927 = 4.3211 < 5.6175] w=0.7588 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)W310.CB) [> 3.8673 = 6.4456 < 8.3792] w=0.7588 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)I311.CB) [> 4.1329 = 6.8882 < 8.9546] w=0.7588 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)W310.CB) [> 4.1713 = 6.9521 < 9.0377] w=0.7588 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)I311.CB) [> 2.8789 = 4.7982 < 6.2376] w=0.7588 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)S127.CB) [> 3.0510 = 5.0851 < 6.6106] w=0.7588 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)Q237.CB) [> 3.6393 = 6.0654 < 7.8851] w=0.7588 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)V248.CB) [> 4.3460 = 7.2433 < 9.4163] w=0.7588 to align # Constraint # added constraint: constraint((T0298)D148.CB, (T0298)A253.CB) [> 2.5244 = 4.2073 < 5.4696] w=0.7588 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)Q251.CB) [> 4.4144 = 7.3573 < 9.5646] w=0.7588 to align # Constraint # added constraint: constraint((T0298)Q151.CB, (T0298)L231.CB) [> 4.4211 = 7.3685 < 9.5790] w=0.7538 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)L231.CB) [> 4.4124 = 7.3540 < 9.5602] w=0.7500 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)V233.CB) [> 3.9535 = 6.5892 < 8.5659] w=0.7500 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)R33.CB) [> 3.9614 = 6.6024 < 8.5831] w=0.7471 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)F242.CB) [> 3.1992 = 5.3320 < 6.9317] w=0.7462 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)G243.CA) [> 2.8194 = 4.6990 < 6.1087] w=0.7462 to align # Constraint # added constraint: constraint((T0298)Q251.CB, (T0298)Q306.CB) [> 3.2754 = 5.4590 < 7.0967] w=0.7462 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)S313.CB) [> 3.0336 = 5.0561 < 6.5729] w=0.7462 to align # Constraint # added constraint: constraint((T0298)V274.CB, (T0298)G295.CA) [> 3.6439 = 6.0731 < 7.8951] w=0.7462 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)C137.CB) [> 3.0107 = 5.0179 < 6.5233] w=0.7462 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)Q251.CB) [> 4.3518 = 7.2530 < 9.4289] w=0.7437 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)P230.CB) [> 4.2026 = 7.0043 < 9.1056] w=0.7412 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)L309.CB) [> 3.8343 = 6.3905 < 8.3076] w=0.7374 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)I236.CB) [> 4.1341 = 6.8902 < 8.9573] w=0.7362 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L36.CB) [> 4.1305 = 6.8841 < 8.9493] w=0.7356 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)G68.CA) [> 3.8078 = 6.3464 < 8.2503] w=0.7344 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)N308.CB) [> 3.2788 = 5.4647 < 7.1041] w=0.7335 to align # Constraint # added constraint: constraint((T0298)C252.CB, (T0298)V307.CB) [> 3.7653 = 6.2755 < 8.1582] w=0.7335 to align # Constraint # added constraint: constraint((T0298)V261.CB, (T0298)V307.CB) [> 3.7437 = 6.2396 < 8.1114] w=0.7335 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)F241.CB) [> 3.8220 = 6.3700 < 8.2810] w=0.7335 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)V240.CB) [> 4.0322 = 6.7203 < 8.7363] w=0.7335 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)P239.CB) [> 4.0707 = 6.7845 < 8.8198] w=0.7335 to align # Constraint # added constraint: constraint((T0298)L250.CB, (T0298)Q306.CB) [> 4.3569 = 7.2615 < 9.4399] w=0.7335 to align # Constraint # added constraint: constraint((T0298)V248.CB, (T0298)W310.CB) [> 4.4809 = 7.4682 < 9.7087] w=0.7335 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)N315.CB) [> 3.2530 = 5.4217 < 7.0482] w=0.7335 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)D314.CB) [> 3.1711 = 5.2852 < 6.8708] w=0.7335 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)A320.CB) [> 4.2613 = 7.1022 < 9.2329] w=0.7335 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)A324.CB) [> 3.1695 = 5.2825 < 6.8672] w=0.7335 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)L152.CB) [> 4.1835 = 6.9726 < 9.0644] w=0.7335 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)S247.CB) [> 4.3802 = 7.3003 < 9.4904] w=0.7311 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)V248.CB) [> 3.9898 = 6.6497 < 8.6447] w=0.7311 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)C91.CB) [> 4.3178 = 7.1963 < 9.3552] w=0.7306 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)Q237.CB) [> 3.2326 = 5.3877 < 7.0040] w=0.7285 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)T234.CB) [> 4.4973 = 7.4955 < 9.7441] w=0.7235 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)L36.CB) [> 3.2809 = 5.4682 < 7.1087] w=0.7229 to align # Constraint # added constraint: constraint((T0298)V248.CB, (T0298)N308.CB) [> 4.1719 = 6.9532 < 9.0392] w=0.7209 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)V307.CB) [> 4.4301 = 7.3835 < 9.5986] w=0.7209 to align # Constraint # added constraint: constraint((T0298)L250.CB, (T0298)V307.CB) [> 3.2800 = 5.4667 < 7.1067] w=0.7209 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)L265.CB) [> 4.1472 = 6.9120 < 8.9856] w=0.7209 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)C252.CB) [> 4.3093 = 7.1821 < 9.3367] w=0.7209 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)A141.CB) [> 3.0998 = 5.1664 < 6.7163] w=0.7209 to align # Constraint # added constraint: constraint((T0298)Q251.CB, (T0298)C305.CB) [> 3.5086 = 5.8477 < 7.6020] w=0.7209 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)Q306.CB) [> 4.0575 = 6.7625 < 8.7912] w=0.7209 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)S313.CB) [> 3.9153 = 6.5256 < 8.4833] w=0.7209 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)V312.CB) [> 4.1333 = 6.8889 < 8.9555] w=0.7209 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)D314.CB) [> 3.8336 = 6.3893 < 8.3061] w=0.7209 to align # Constraint # added constraint: constraint((T0298)T146.CB, (T0298)V264.CB) [> 2.9888 = 4.9813 < 6.4757] w=0.7209 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)S127.CB) [> 3.3972 = 5.6621 < 7.3607] w=0.7209 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)S247.CB) [> 4.2956 = 7.1594 < 9.3072] w=0.7133 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)A253.CB) [> 4.3448 = 7.2413 < 9.4137] w=0.7121 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)R33.CB) [> 3.3648 = 5.6081 < 7.2905] w=0.7103 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)D95.CB) [> 3.4584 = 5.7640 < 7.4932] w=0.7091 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)L126.CB) [> 3.3398 = 5.5663 < 7.2362] w=0.7082 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)E138.CB) [> 3.8925 = 6.4876 < 8.4339] w=0.7082 to align # Constraint # added constraint: constraint((T0298)C252.CB, (T0298)C305.CB) [> 3.2242 = 5.3737 < 6.9858] w=0.7082 to align # Constraint # added constraint: constraint((T0298)C252.CB, (T0298)Q306.CB) [> 4.4117 = 7.3528 < 9.5586] w=0.7082 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)L327.CB) [> 3.3637 = 5.6061 < 7.2879] w=0.7020 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)S313.CB) [> 3.4511 = 5.7519 < 7.4775] w=0.6994 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)L126.CB) [> 4.2031 = 7.0052 < 9.1067] w=0.6971 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)G68.CA) [> 4.4358 = 7.3930 < 9.6109] w=0.6965 to align # Constraint # added constraint: constraint((T0298)L69.CB, (T0298)I332.CB) [> 4.0557 = 6.7595 < 8.7874] w=0.6964 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)D244.CB) [> 3.9632 = 6.6053 < 8.5869] w=0.6956 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)L309.CB) [> 4.1148 = 6.8580 < 8.9153] w=0.6956 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)I311.CB) [> 3.2888 = 5.4813 < 7.1258] w=0.6956 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)A320.CB) [> 3.4671 = 5.7785 < 7.5120] w=0.6900 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)L125.CB) [> 3.4553 = 5.7589 < 7.4866] w=0.6893 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)W310.CB) [> 3.6684 = 6.1140 < 7.9483] w=0.6868 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)N232.CB) [> 4.5198 = 7.5330 < 9.7929] w=0.6856 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)L24.CB) [> 3.5722 = 5.9536 < 7.7397] w=0.6838 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)V21.CB) [> 3.9490 = 6.5817 < 8.5562] w=0.6838 to align # Constraint # added constraint: constraint((T0298)A105.CB, (T0298)L125.CB) [> 3.1155 = 5.1925 < 6.7502] w=0.6830 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)L126.CB) [> 4.1901 = 6.9835 < 9.0785] w=0.6830 to align # Constraint # added constraint: constraint((T0298)S111.CB, (T0298)E138.CB) [> 3.4319 = 5.7198 < 7.4357] w=0.6830 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)A238.CB) [> 4.1197 = 6.8661 < 8.9260] w=0.6830 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)A238.CB) [> 3.2827 = 5.4711 < 7.1124] w=0.6830 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)V233.CB) [> 3.9222 = 6.5370 < 8.4981] w=0.6818 to align # Constraint # added constraint: constraint((T0298)L126.CB, (T0298)L327.CB) [> 3.8552 = 6.4253 < 8.3530] w=0.6767 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)S313.CB) [> 3.7852 = 6.3086 < 8.2012] w=0.6741 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)V312.CB) [> 3.7837 = 6.3061 < 8.1979] w=0.6741 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)L126.CB) [> 3.6614 = 6.1023 < 7.9330] w=0.6718 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)S127.CB) [> 3.8779 = 6.4631 < 8.4020] w=0.6718 to align # Constraint # added constraint: constraint((T0298)A105.CB, (T0298)L126.CB) [> 3.6791 = 6.1318 < 7.9714] w=0.6703 to align # Constraint # added constraint: constraint((T0298)L100.CB, (T0298)S127.CB) [> 2.8451 = 4.7418 < 6.1644] w=0.6703 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)N323.CB) [> 3.3111 = 5.5184 < 7.1740] w=0.6703 to align # Constraint # added constraint: constraint((T0298)D290.CB, (T0298)K318.CB) [> 3.4465 = 5.7442 < 7.4675] w=0.6703 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)L326.CB) [> 2.9750 = 4.9584 < 6.4459] w=0.6703 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)L327.CB) [> 3.7747 = 6.2911 < 8.1785] w=0.6703 to align # Constraint # added constraint: constraint((T0298)G288.CA, (T0298)D314.CB) [> 3.1287 = 5.2146 < 6.7789] w=0.6703 to align # Constraint # added constraint: constraint((T0298)Q289.CB, (T0298)D314.CB) [> 3.0302 = 5.0503 < 6.5654] w=0.6703 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)I311.CB) [> 4.3970 = 7.3283 < 9.5268] w=0.6615 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)G328.CA) [> 4.5519 = 7.5866 < 9.8625] w=0.6585 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)I332.CB) [> 3.1301 = 5.2168 < 6.7818] w=0.6584 to align # Constraint # added constraint: constraint((T0298)L250.CB, (T0298)L309.CB) [> 4.2846 = 7.1411 < 9.2834] w=0.6577 to align # Constraint # added constraint: constraint((T0298)D290.CB, (T0298)L322.CB) [> 2.9788 = 4.9647 < 6.4541] w=0.6577 to align # Constraint # added constraint: constraint((T0298)D290.CB, (T0298)D314.CB) [> 4.3617 = 7.2695 < 9.4504] w=0.6577 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)W310.CB) [> 3.0647 = 5.1079 < 6.6402] w=0.6488 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)L37.CB) [> 4.1840 = 6.9733 < 9.0653] w=0.6476 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)N323.CB) [> 4.1325 = 6.8875 < 8.9538] w=0.6450 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)S127.CB) [> 3.9946 = 6.6577 < 8.6550] w=0.6450 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L126.CB) [> 3.4409 = 5.7349 < 7.4554] w=0.6450 to align # Constraint # added constraint: constraint((T0298)A286.CB, (T0298)V312.CB) [> 2.9717 = 4.9529 < 6.4387] w=0.6450 to align # Constraint # added constraint: constraint((T0298)F64.CB, (T0298)C91.CB) [> 3.3927 = 5.6544 < 7.3508] w=0.6450 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)F64.CB) [> 3.6073 = 6.0121 < 7.8158] w=0.6450 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)S128.CB) [> 3.8438 = 6.4064 < 8.3283] w=0.6324 to align # Constraint # added constraint: constraint((T0298)P255.CB, (T0298)C305.CB) [> 3.4962 = 5.8269 < 7.5750] w=0.6324 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)L330.CB) [> 4.3034 = 7.1723 < 9.3240] w=0.6324 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)N315.CB) [> 4.0915 = 6.8192 < 8.8649] w=0.6324 to align # Constraint # added constraint: constraint((T0298)A286.CB, (T0298)D314.CB) [> 3.2391 = 5.3985 < 7.0181] w=0.6324 to align # Constraint # added constraint: constraint((T0298)L147.CB, (T0298)C252.CB) [> 2.6032 = 4.3386 < 5.6402] w=0.6286 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)L34.CB) [> 3.4550 = 5.7583 < 7.4858] w=0.6217 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)G328.CA) [> 4.3446 = 7.2410 < 9.4133] w=0.6206 to align # Constraint # added constraint: constraint((T0298)G275.CA, (T0298)G295.CA) [> 3.7084 = 6.1806 < 8.0348] w=0.6197 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)P123.CB) [> 3.0275 = 5.0459 < 6.5596] w=0.6197 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)S127.CB) [> 4.1596 = 6.9326 < 9.0124] w=0.6197 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)P129.CB) [> 3.2312 = 5.3853 < 7.0009] w=0.6197 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)L117.CB) [> 3.9128 = 6.5214 < 8.4778] w=0.6197 to align # Constraint # added constraint: constraint((T0298)E272.CB, (T0298)E291.CB) [> 3.6215 = 6.0358 < 7.8466] w=0.6197 to align # Constraint # added constraint: constraint((T0298)L287.CB, (T0298)D314.CB) [> 2.9572 = 4.9286 < 6.4072] w=0.6197 to align # Constraint # added constraint: constraint((T0298)A133.CB, (T0298)N323.CB) [> 3.5457 = 5.9095 < 7.6823] w=0.6161 to align # Constraint # added constraint: constraint((T0298)L117.CB, (T0298)L126.CB) [> 4.0043 = 6.6739 < 8.6760] w=0.6148 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)C235.CB) [> 4.3054 = 7.1757 < 9.3284] w=0.6097 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)S128.CB) [> 3.5177 = 5.8629 < 7.6217] w=0.6085 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)N315.CB) [> 3.6538 = 6.0897 < 7.9166] w=0.6071 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)T292.CB) [> 3.4916 = 5.8193 < 7.5651] w=0.6071 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)N315.CB) [> 4.0198 = 6.6997 < 8.7096] w=0.6071 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)A86.CB) [> 4.1736 = 6.9560 < 9.0428] w=0.6071 to align # Constraint # added constraint: constraint((T0298)F29.CB, (T0298)V325.CB) [> 3.8212 = 6.3686 < 8.2792] w=0.6029 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)S97.CB) [> 3.3501 = 5.5835 < 7.2585] w=0.6009 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)C137.CB) [> 3.0294 = 5.0490 < 6.5637] w=0.5944 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L327.CB) [> 3.2347 = 5.3912 < 7.0086] w=0.5944 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)Q237.CB) [> 3.9701 = 6.6169 < 8.6019] w=0.5944 to align # Constraint # added constraint: constraint((T0298)A114.CB, (T0298)L330.CB) [> 3.3598 = 5.5996 < 7.2795] w=0.5944 to align # Constraint # added constraint: constraint((T0298)L147.CB, (T0298)V256.CB) [> 3.1502 = 5.2503 < 6.8254] w=0.5944 to align # Constraint # added constraint: constraint((T0298)E291.CB, (T0298)S313.CB) [> 4.4276 = 7.3794 < 9.5932] w=0.5944 to align # Constraint # added constraint: constraint((T0298)F64.CB, (T0298)A89.CB) [> 3.2057 = 5.3428 < 6.9456] w=0.5919 to align # Constraint # added constraint: constraint((T0298)A133.CB, (T0298)G319.CA) [> 3.7352 = 6.2253 < 8.0928] w=0.5914 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)V312.CB) [> 3.2110 = 5.3517 < 6.9572] w=0.5856 to align # Constraint # added constraint: constraint((T0298)S79.CB, (T0298)L100.CB) [> 3.9238 = 6.5397 < 8.5016] w=0.5844 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)L37.CB) [> 3.0656 = 5.1093 < 6.6420] w=0.5838 to align # Constraint # added constraint: constraint((T0298)A19.CB, (T0298)K318.CB) [> 3.6289 = 6.0482 < 7.8626] w=0.5826 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)S128.CB) [> 4.3328 = 7.2213 < 9.3877] w=0.5818 to align # Constraint # added constraint: constraint((T0298)A83.CB, (T0298)L125.CB) [> 3.4877 = 5.8128 < 7.5567] w=0.5818 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)S313.CB) [> 4.3853 = 7.3089 < 9.5016] w=0.5818 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)S313.CB) [> 4.2184 = 7.0307 < 9.1399] w=0.5818 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)A238.CB) [> 4.4334 = 7.3890 < 9.6057] w=0.5818 to align # Constraint # added constraint: constraint((T0298)V261.CB, (T0298)L309.CB) [> 4.2925 = 7.1542 < 9.3005] w=0.5818 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)I216.CB) [> 3.3134 = 5.5224 < 7.1791] w=0.5818 to align # Constraint # added constraint: constraint((T0298)S65.CB, (T0298)A89.CB) [> 3.7833 = 6.3056 < 8.1972] w=0.5818 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)A83.CB) [> 3.6400 = 6.0667 < 7.8867] w=0.5806 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)C235.CB) [> 4.5734 = 7.6223 < 9.9089] w=0.5767 to align # Constraint # added constraint: constraint((T0298)L126.CB, (T0298)L331.CB) [> 4.1081 = 6.8468 < 8.9009] w=0.5718 to align # Constraint # added constraint: constraint((T0298)G98.CA, (T0298)P129.CB) [> 3.8645 = 6.4408 < 8.3731] w=0.5717 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)L250.CB) [> 4.5625 = 7.6041 < 9.8854] w=0.5704 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)L246.CB) [> 4.3696 = 7.2827 < 9.4675] w=0.5704 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)H35.CB) [> 3.7738 = 6.2897 < 8.1766] w=0.5699 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)N308.CB) [> 4.1517 = 6.9195 < 8.9953] w=0.5691 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)A133.CB) [> 3.4607 = 5.7678 < 7.4981] w=0.5691 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L117.CB) [> 3.4966 = 5.8276 < 7.5759] w=0.5691 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)L287.CB) [> 3.5098 = 5.8496 < 7.6045] w=0.5691 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)A286.CB) [> 3.6824 = 6.1374 < 7.9786] w=0.5691 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)S162.CB) [> 3.6897 = 6.1496 < 7.9945] w=0.5691 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)A73.CB) [> 4.3981 = 7.3302 < 9.5293] w=0.5691 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)L37.CB) [> 4.1290 = 6.8816 < 8.9461] w=0.5661 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)G295.CA) [> 4.2685 = 7.1142 < 9.2484] w=0.5655 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)Q237.CB) [> 4.4918 = 7.4863 < 9.7322] w=0.5578 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)L250.CB) [> 4.5646 = 7.6076 < 9.8899] w=0.5577 to align # Constraint # added constraint: constraint((T0298)G22.CA, (T0298)A321.CB) [> 4.4883 = 7.4806 < 9.7247] w=0.5574 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)P129.CB) [> 3.4408 = 5.7347 < 7.4551] w=0.5565 to align # Constraint # added constraint: constraint((T0298)C137.CB, (T0298)V220.CB) [> 3.4396 = 5.7327 < 7.4525] w=0.5565 to align # Constraint # added constraint: constraint((T0298)W273.CB, (T0298)Y293.CB) [> 4.1233 = 6.8721 < 8.9338] w=0.5565 to align # Constraint # added constraint: constraint((T0298)C137.CB, (T0298)L224.CB) [> 3.8972 = 6.4953 < 8.4439] w=0.5565 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)L287.CB) [> 2.9320 = 4.8868 < 6.3528] w=0.5565 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)V312.CB) [> 4.1297 = 6.8828 < 8.9476] w=0.5565 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)H35.CB) [> 3.8431 = 6.4053 < 8.3268] w=0.5534 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L37.CB) [> 3.2555 = 5.4259 < 7.0537] w=0.5534 to align # Constraint # added constraint: constraint((T0298)R87.CB, (T0298)F124.CB) [> 3.9019 = 6.5031 < 8.4541] w=0.5516 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)H32.CB) [> 3.9488 = 6.5813 < 8.5556] w=0.5453 to align # Constraint # added constraint: constraint((T0298)S111.CB, (T0298)A141.CB) [> 4.2845 = 7.1407 < 9.2830] w=0.5438 to align # Constraint # added constraint: constraint((T0298)F217.CB, (T0298)L231.CB) [> 3.1021 = 5.1701 < 6.7211] w=0.5438 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)Q237.CB) [> 2.5377 = 4.2295 < 5.4983] w=0.5438 to align # Constraint # added constraint: constraint((T0298)V240.CB, (T0298)V283.CB) [> 3.6757 = 6.1262 < 7.9640] w=0.5438 to align # Constraint # added constraint: constraint((T0298)A99.CB, (T0298)S127.CB) [> 3.9624 = 6.6041 < 8.5853] w=0.5438 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)S128.CB) [> 3.6511 = 6.0852 < 7.9107] w=0.5438 to align # Constraint # added constraint: constraint((T0298)G98.CA, (T0298)S128.CB) [> 3.5684 = 5.9474 < 7.7316] w=0.5438 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)V312.CB) [> 3.8238 = 6.3730 < 8.2849] w=0.5350 to align # Constraint # added constraint: constraint((T0298)A105.CB, (T0298)S127.CB) [> 2.9152 = 4.8587 < 6.3162] w=0.5312 to align # Constraint # added constraint: constraint((T0298)V274.CB, (T0298)Y293.CB) [> 3.4721 = 5.7868 < 7.5228] w=0.5312 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)L246.CB) [> 3.2508 = 5.4180 < 7.0434] w=0.5312 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)G319.CA) [> 3.7155 = 6.1925 < 8.0502] w=0.5312 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)R116.CB) [> 3.8630 = 6.4383 < 8.3697] w=0.5312 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)I193.CB) [> 3.0008 = 5.0013 < 6.5016] w=0.5312 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)P239.CB) [> 3.7916 = 6.3193 < 8.2151] w=0.5312 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)T234.CB) [> 3.9198 = 6.5330 < 8.4929] w=0.5312 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)L309.CB) [> 4.6175 = 7.6958 < 10.0046] w=0.5312 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)L158.CB) [> 4.2994 = 7.1657 < 9.3155] w=0.5312 to align # Constraint # added constraint: constraint((T0298)F64.CB, (T0298)A86.CB) [> 3.7356 = 6.2259 < 8.0937] w=0.5312 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)V59.CB) [> 3.7721 = 6.2869 < 8.1730] w=0.5312 to align # Constraint # added constraint: constraint((T0298)L36.CB, (T0298)L54.CB) [> 3.8878 = 6.4796 < 8.4235] w=0.5249 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)A324.CB) [> 3.5225 = 5.8708 < 7.6321] w=0.5200 to align # Constraint # added constraint: constraint((T0298)A83.CB, (T0298)V93.CB) [> 3.8890 = 6.4816 < 8.4261] w=0.5194 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)S128.CB) [> 4.2611 = 7.1018 < 9.2323] w=0.5185 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)L126.CB) [> 4.0381 = 6.7302 < 8.7492] w=0.5185 to align # Constraint # added constraint: constraint((T0298)E138.CB, (T0298)G270.CA) [> 3.9633 = 6.6055 < 8.5872] w=0.5185 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)I311.CB) [> 3.5010 = 5.8349 < 7.5854] w=0.5185 to align # Constraint # added constraint: constraint((T0298)A194.CB, (T0298)P239.CB) [> 2.9605 = 4.9342 < 6.4145] w=0.5185 to align # Constraint # added constraint: constraint((T0298)V139.CB, (T0298)Y293.CB) [> 3.6105 = 6.0175 < 7.8228] w=0.5185 to align # Constraint # added constraint: constraint((T0298)V283.CB, (T0298)V312.CB) [> 4.2191 = 7.0318 < 9.1414] w=0.5185 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)H35.CB) [> 3.0602 = 5.1003 < 6.6304] w=0.5142 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)D95.CB) [> 3.6823 = 6.1372 < 7.9784] w=0.5097 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)G328.CA) [> 4.5203 = 7.5339 < 9.7941] w=0.5068 to align # Constraint # added constraint: constraint((T0298)L23.CB, (T0298)A324.CB) [> 4.3829 = 7.3048 < 9.4962] w=0.5068 to align # Constraint # added constraint: constraint((T0298)A19.CB, (T0298)A320.CB) [> 4.3037 = 7.1728 < 9.3247] w=0.5068 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)V312.CB) [> 4.6638 = 7.7731 < 10.1050] w=0.5059 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)P129.CB) [> 4.1935 = 6.9892 < 9.0859] w=0.5059 to align # Constraint # added constraint: constraint((T0298)V256.CB, (T0298)V307.CB) [> 4.2326 = 7.0544 < 9.1707] w=0.5059 to align # Constraint # added constraint: constraint((T0298)S111.CB, (T0298)G270.CA) [> 3.6818 = 6.1363 < 7.9772] w=0.5059 to align # Constraint # added constraint: constraint((T0298)L117.CB, (T0298)L331.CB) [> 3.7897 = 6.3161 < 8.2109] w=0.5059 to align # Constraint # added constraint: constraint((T0298)Q289.CB, (T0298)K318.CB) [> 3.8782 = 6.4636 < 8.4027] w=0.5059 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)I236.CB) [> 4.0551 = 6.7584 < 8.7860] w=0.5059 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)I236.CB) [> 3.3365 = 5.5609 < 7.2292] w=0.5059 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)V283.CB) [> 4.1006 = 6.8343 < 8.8846] w=0.5059 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)L309.CB) [> 4.6483 = 7.7471 < 10.0713] w=0.5059 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)L265.CB) [> 4.4219 = 7.3698 < 9.5807] w=0.5059 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)A156.CB) [> 3.1524 = 5.2540 < 6.8302] w=0.5059 to align # Constraint # added constraint: constraint((T0298)L144.CB, (T0298)L224.CB) [> 3.8120 = 6.3534 < 8.2594] w=0.5047 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)V67.CB) [> 3.4211 = 5.7019 < 7.4125] w=0.5028 to align # Constraint # added constraint: constraint((T0298)V59.CB, (T0298)H82.CB) [> 4.3253 = 7.2088 < 9.3715] w=0.4996 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)S313.CB) [> 4.1315 = 6.8857 < 8.9515] w=0.4971 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)G319.CA) [> 3.9793 = 6.6322 < 8.6218] w=0.4970 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)L31.CB) [> 3.8929 = 6.4882 < 8.4347] w=0.4959 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)G328.CA) [> 3.4929 = 5.8214 < 7.5679] w=0.4941 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)A324.CB) [> 3.2023 = 5.3372 < 6.9384] w=0.4941 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)S92.CB) [> 4.2264 = 7.0440 < 9.1572] w=0.4941 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)S313.CB) [> 4.1729 = 6.9549 < 9.0413] w=0.4932 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)L250.CB) [> 4.3708 = 7.2846 < 9.4700] w=0.4932 to align # Constraint # added constraint: constraint((T0298)L265.CB, (T0298)V297.CB) [> 4.4142 = 7.3570 < 9.5641] w=0.4932 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)L231.CB) [> 4.3046 = 7.1743 < 9.3266] w=0.4932 to align # Constraint # added constraint: constraint((T0298)T262.CB, (T0298)V297.CB) [> 3.1328 = 5.2214 < 6.7878] w=0.4932 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)V283.CB) [> 3.1789 = 5.2982 < 6.8876] w=0.4932 to align # Constraint # added constraint: constraint((T0298)G68.CA, (T0298)G90.CA) [> 4.4595 = 7.4326 < 9.6623] w=0.4915 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)S97.CB) [> 3.8620 = 6.4367 < 8.3677] w=0.4909 to align # Constraint # added constraint: constraint((T0298)A299.CB, (T0298)N308.CB) [> 4.0791 = 6.7985 < 8.8380] w=0.4844 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)I311.CB) [> 3.8582 = 6.4303 < 8.3594] w=0.4844 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)R317.CB) [> 4.0972 = 6.8287 < 8.8773] w=0.4815 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)R317.CB) [> 3.4385 = 5.7309 < 7.4502] w=0.4815 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)V93.CB) [> 3.8414 = 6.4023 < 8.3230] w=0.4815 to align # Constraint # added constraint: constraint((T0298)V220.CB, (T0298)L231.CB) [> 3.3947 = 5.6579 < 7.3552] w=0.4806 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)L246.CB) [> 4.1251 = 6.8751 < 8.9376] w=0.4806 to align # Constraint # added constraint: constraint((T0298)E291.CB, (T0298)G319.CA) [> 4.0538 = 6.7563 < 8.7832] w=0.4806 to align # Constraint # added constraint: constraint((T0298)D290.CB, (T0298)G319.CA) [> 3.3680 = 5.6133 < 7.2972] w=0.4806 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)G98.CA) [> 3.7838 = 6.3063 < 8.1981] w=0.4782 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)A99.CB) [> 2.8080 = 4.6801 < 6.0841] w=0.4782 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)R33.CB) [> 4.1329 = 6.8882 < 8.9547] w=0.4775 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)L54.CB) [> 3.8859 = 6.4765 < 8.4194] w=0.4775 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)A38.CB) [> 3.6993 = 6.1655 < 8.0152] w=0.4700 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)N315.CB) [> 2.4310 = 4.0516 < 5.2671] w=0.4679 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)A86.CB) [> 4.2276 = 7.0461 < 9.1599] w=0.4679 to align # Constraint # added constraint: constraint((T0298)S92.CB, (T0298)L331.CB) [> 3.2002 = 5.3336 < 6.9337] w=0.4650 to align # Constraint # added constraint: constraint((T0298)A133.CB, (T0298)S313.CB) [> 4.3175 = 7.1959 < 9.3546] w=0.4591 to align # Constraint # added constraint: constraint((T0298)L23.CB, (T0298)K318.CB) [> 4.3737 = 7.2895 < 9.4764] w=0.4562 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)N315.CB) [> 4.1501 = 6.9168 < 8.9919] w=0.4553 to align # Constraint # added constraint: constraint((T0298)E138.CB, (T0298)I271.CB) [> 3.3781 = 5.6301 < 7.3192] w=0.4553 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)C235.CB) [> 4.3432 = 7.2386 < 9.4102] w=0.4553 to align # Constraint # added constraint: constraint((T0298)F189.CB, (T0298)L198.CB) [> 4.0273 = 6.7122 < 8.7259] w=0.4553 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)G319.CA) [> 3.5178 = 5.8630 < 7.6220] w=0.4553 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)L231.CB) [> 4.4766 = 7.4610 < 9.6993] w=0.4553 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)L231.CB) [> 4.6877 = 7.8129 < 10.1568] w=0.4553 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)F124.CB) [> 4.2679 = 7.1131 < 9.2471] w=0.4553 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)A324.CB) [> 4.5019 = 7.5032 < 9.7542] w=0.4553 to align # Constraint # added constraint: constraint((T0298)G68.CA, (T0298)V93.CB) [> 3.7199 = 6.1998 < 8.0598] w=0.4553 to align # Constraint # added constraint: constraint((T0298)F62.CB, (T0298)A89.CB) [> 3.0613 = 5.1022 < 6.6329] w=0.4553 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)L54.CB) [> 3.5014 = 5.8356 < 7.5863] w=0.4522 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)V56.CB) [> 3.7140 = 6.1900 < 8.0470] w=0.4453 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)L125.CB) [> 4.0782 = 6.7970 < 8.8361] w=0.4427 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)E219.CB) [> 3.5041 = 5.8402 < 7.5923] w=0.4427 to align # Constraint # added constraint: constraint((T0298)L265.CB, (T0298)G295.CA) [> 3.8723 = 6.4539 < 8.3901] w=0.4427 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)R296.CB) [> 3.7912 = 6.3187 < 8.2144] w=0.4427 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)Q237.CB) [> 4.5190 = 7.5317 < 9.7913] w=0.4427 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)I216.CB) [> 3.8717 = 6.4528 < 8.3887] w=0.4427 to align # Constraint # added constraint: constraint((T0298)L24.CB, (T0298)L34.CB) [> 3.2269 = 5.3782 < 6.9916] w=0.4396 to align # Constraint # added constraint: constraint((T0298)A133.CB, (T0298)A320.CB) [> 3.4611 = 5.7685 < 7.4990] w=0.4383 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)E329.CB) [> 4.1095 = 6.8492 < 8.9040] w=0.4309 to align # Constraint # added constraint: constraint((T0298)L258.CB, (T0298)V307.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.4300 to align # Constraint # added constraint: constraint((T0298)Q251.CB, (T0298)V307.CB) [> 4.5995 = 7.6659 < 9.9657] w=0.4300 to align # Constraint # added constraint: constraint((T0298)I271.CB, (T0298)E291.CB) [> 4.1287 = 6.8812 < 8.9455] w=0.4300 to align # Constraint # added constraint: constraint((T0298)L265.CB, (T0298)V274.CB) [> 3.9197 = 6.5328 < 8.4927] w=0.4300 to align # Constraint # added constraint: constraint((T0298)V256.CB, (T0298)P304.CB) [> 3.7691 = 6.2818 < 8.1663] w=0.4300 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)V312.CB) [> 3.6736 = 6.1226 < 7.9594] w=0.4300 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)G284.CA) [> 4.1929 = 6.9881 < 9.0846] w=0.4300 to align # Constraint # added constraint: constraint((T0298)F195.CB, (T0298)P239.CB) [> 4.1564 = 6.9274 < 9.0056] w=0.4300 to align # Constraint # added constraint: constraint((T0298)R80.CB, (T0298)V104.CB) [> 3.6284 = 6.0473 < 7.8615] w=0.4300 to align # Constraint # added constraint: constraint((T0298)L147.CB, (T0298)V264.CB) [> 4.4957 = 7.4928 < 9.7407] w=0.4300 to align # Constraint # added constraint: constraint((T0298)F62.CB, (T0298)A86.CB) [> 3.9611 = 6.6019 < 8.5825] w=0.4300 to align # Constraint # added constraint: constraint((T0298)L140.CB, (T0298)V220.CB) [> 3.8131 = 6.3552 < 8.2617] w=0.4288 to align # Constraint # added constraint: constraint((T0298)D63.CB, (T0298)A89.CB) [> 3.7393 = 6.2321 < 8.1018] w=0.4224 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)R33.CB) [> 3.1486 = 5.2476 < 6.8219] w=0.4213 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)S161.CB) [> 4.2395 = 7.0659 < 9.1856] w=0.4174 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)V283.CB) [> 4.5736 = 7.6226 < 9.9094] w=0.4174 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)E219.CB) [> 3.6406 = 6.0677 < 7.8880] w=0.4174 to align # Constraint # added constraint: constraint((T0298)W273.CB, (T0298)G295.CA) [> 3.8134 = 6.3556 < 8.2623] w=0.4174 to align # Constraint # added constraint: constraint((T0298)Q221.CB, (T0298)L231.CB) [> 4.1382 = 6.8970 < 8.9662] w=0.4174 to align # Constraint # added constraint: constraint((T0298)W273.CB, (T0298)E291.CB) [> 3.4388 = 5.7313 < 7.4507] w=0.4174 to align # Constraint # added constraint: constraint((T0298)A134.CB, (T0298)Y293.CB) [> 3.0385 = 5.0642 < 6.5835] w=0.4174 to align # Constraint # added constraint: constraint((T0298)A114.CB, (T0298)L327.CB) [> 4.0943 = 6.8239 < 8.8711] w=0.4174 to align # Constraint # added constraint: constraint((T0298)A99.CB, (T0298)P129.CB) [> 3.6582 = 6.0970 < 7.9261] w=0.4174 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)Y293.CB) [> 4.3750 = 7.2917 < 9.4792] w=0.4174 to align # Constraint # added constraint: constraint((T0298)S65.CB, (T0298)C91.CB) [> 4.0911 = 6.8185 < 8.8640] w=0.4174 to align # Constraint # added constraint: constraint((T0298)V67.CB, (T0298)G90.CA) [> 4.4173 = 7.3621 < 9.5708] w=0.4174 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)S97.CB) [> 3.3484 = 5.5806 < 7.2548] w=0.4150 to align # Constraint # added constraint: constraint((T0298)A38.CB, (T0298)V56.CB) [> 3.5540 = 5.9233 < 7.7004] w=0.4149 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)L246.CB) [> 4.3865 = 7.3109 < 9.5042] w=0.4098 to align # Constraint # added constraint: constraint((T0298)S92.CB, (T0298)G328.CA) [> 4.3981 = 7.3302 < 9.5292] w=0.4056 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)H82.CB) [> 3.7445 = 6.2409 < 8.1132] w=0.4056 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)L125.CB) [> 4.3411 = 7.2351 < 9.4057] w=0.4047 to align # Constraint # added constraint: constraint((T0298)W273.CB, (T0298)V294.CB) [> 3.3905 = 5.6508 < 7.3461] w=0.4047 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)V316.CB) [> 3.7734 = 6.2890 < 8.1757] w=0.4047 to align # Constraint # added constraint: constraint((T0298)A19.CB, (T0298)V316.CB) [> 3.1861 = 5.3101 < 6.9032] w=0.4047 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)Y293.CB) [> 4.2602 = 7.1004 < 9.2305] w=0.4047 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)A238.CB) [> 4.6171 = 7.6952 < 10.0038] w=0.4047 to align # Constraint # added constraint: constraint((T0298)G288.CA, (T0298)K318.CB) [> 2.7308 = 4.5513 < 5.9166] w=0.4047 to align # Constraint # added constraint: constraint((T0298)A299.CB, (T0298)W310.CB) [> 2.6439 = 4.4065 < 5.7284] w=0.4047 to align # Constraint # added constraint: constraint((T0298)G300.CA, (T0298)L309.CB) [> 3.3540 = 5.5899 < 7.2669] w=0.4047 to align # Constraint # added constraint: constraint((T0298)A38.CB, (T0298)G57.CA) [> 3.8611 = 6.4352 < 8.3657] w=0.4022 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)G98.CA) [> 4.5750 = 7.6249 < 9.9124] w=0.3997 to align # Constraint # added constraint: constraint((T0298)L143.CB, (T0298)L309.CB) [> 4.2900 = 7.1500 < 9.2950] w=0.3959 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)S39.CB) [> 3.0614 = 5.1023 < 6.6330] w=0.3953 to align # Constraint # added constraint: constraint((T0298)S79.CB, (T0298)D95.CB) [> 3.3920 = 5.6533 < 7.3493] w=0.3941 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)A320.CB) [> 3.6210 = 6.0350 < 7.8455] w=0.3935 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)C235.CB) [> 4.4925 = 7.4874 < 9.7337] w=0.3933 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)G243.CA) [> 4.4654 = 7.4424 < 9.6751] w=0.3933 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)R296.CB) [> 4.6355 = 7.7258 < 10.0435] w=0.3933 to align # Constraint # added constraint: constraint((T0298)L258.CB, (T0298)Q301.CB) [> 4.0241 = 6.7068 < 8.7189] w=0.3921 to align # Constraint # added constraint: constraint((T0298)V248.CB, (T0298)V307.CB) [> 4.6450 = 7.7417 < 10.0642] w=0.3921 to align # Constraint # added constraint: constraint((T0298)N113.CB, (T0298)L224.CB) [> 4.1252 = 6.8753 < 8.9380] w=0.3921 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)V316.CB) [> 4.1549 = 6.9249 < 9.0023] w=0.3921 to align # Constraint # added constraint: constraint((T0298)A141.CB, (T0298)L224.CB) [> 3.6323 = 6.0538 < 7.8699] w=0.3921 to align # Constraint # added constraint: constraint((T0298)S111.CB, (T0298)K269.CB) [> 4.2176 = 7.0293 < 9.1381] w=0.3921 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)V220.CB) [> 3.6975 = 6.1625 < 8.0112] w=0.3921 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)S313.CB) [> 3.8831 = 6.4719 < 8.4134] w=0.3921 to align # Constraint # added constraint: constraint((T0298)L188.CB, (T0298)L198.CB) [> 3.1948 = 5.3247 < 6.9221] w=0.3921 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)A99.CB) [> 4.2159 = 7.0265 < 9.1344] w=0.3909 to align # Constraint # added constraint: constraint((T0298)L31.CB, (T0298)E329.CB) [> 3.9538 = 6.5897 < 8.5666] w=0.3896 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)L125.CB) [> 4.2754 = 7.1256 < 9.2633] w=0.3858 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)L36.CB) [> 3.3365 = 5.5608 < 7.2290] w=0.3839 to align # Constraint # added constraint: constraint((T0298)L163.CB, (T0298)F189.CB) [> 4.0991 = 6.8319 < 8.8815] w=0.3807 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)V132.CB) [> 4.0801 = 6.8002 < 8.8403] w=0.3794 to align # Constraint # added constraint: constraint((T0298)C137.CB, (T0298)F217.CB) [> 3.6169 = 6.0282 < 7.8367] w=0.3794 to align # Constraint # added constraint: constraint((T0298)A181.CB, (T0298)D190.CB) [> 3.1535 = 5.2558 < 6.8325] w=0.3794 to align # Constraint # added constraint: constraint((T0298)A141.CB, (T0298)T268.CB) [> 3.8710 = 6.4517 < 8.3872] w=0.3794 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)F62.CB) [> 4.3253 = 7.2089 < 9.3716] w=0.3794 to align # Constraint # added constraint: constraint((T0298)L136.CB, (T0298)V220.CB) [> 3.8248 = 6.3747 < 8.2872] w=0.3788 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)A38.CB) [> 3.9262 = 6.5437 < 8.5068] w=0.3764 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)L31.CB) [> 3.5636 = 5.9394 < 7.7212] w=0.3707 to align # Constraint # added constraint: constraint((T0298)R33.CB, (T0298)V67.CB) [> 3.4066 = 5.6776 < 7.3809] w=0.3707 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)G229.CA) [> 4.3003 = 7.1672 < 9.3174] w=0.3693 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)H82.CB) [> 3.7359 = 6.2264 < 8.0944] w=0.3676 to align # Constraint # added constraint: constraint((T0298)D285.CB, (T0298)V312.CB) [> 4.5009 = 7.5015 < 9.7519] w=0.3668 to align # Constraint # added constraint: constraint((T0298)S79.CB, (T0298)A99.CB) [> 3.0843 = 5.1405 < 6.6827] w=0.3668 to align # Constraint # added constraint: constraint((T0298)R214.CB, (T0298)L231.CB) [> 3.4440 = 5.7400 < 7.4620] w=0.3668 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)E213.CB) [> 3.0595 = 5.0992 < 6.6290] w=0.3668 to align # Constraint # added constraint: constraint((T0298)W273.CB, (T0298)T292.CB) [> 2.9594 = 4.9323 < 6.4120] w=0.3668 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)A320.CB) [> 4.5617 = 7.6028 < 9.8837] w=0.3668 to align # Constraint # added constraint: constraint((T0298)L287.CB, (T0298)K318.CB) [> 3.8432 = 6.4053 < 8.3269] w=0.3668 to align # Constraint # added constraint: constraint((T0298)D257.CB, (T0298)P304.CB) [> 4.1469 = 6.9115 < 8.9850] w=0.3668 to align # Constraint # added constraint: constraint((T0298)N180.CB, (T0298)Q192.CB) [> 3.1440 = 5.2400 < 6.8120] w=0.3668 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)T292.CB) [> 3.9955 = 6.6592 < 8.6569] w=0.3668 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)A194.CB) [> 4.2849 = 7.1416 < 9.2840] w=0.3668 to align # Constraint # added constraint: constraint((T0298)A83.CB, (T0298)I94.CB) [> 3.0115 = 5.0191 < 6.5249] w=0.3668 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)S128.CB) [> 3.8747 = 6.4577 < 8.3951] w=0.3657 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)L96.CB) [> 2.9897 = 4.9829 < 6.4778] w=0.3644 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)S39.CB) [> 3.4905 = 5.8175 < 7.5628] w=0.3599 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)L54.CB) [> 3.8998 = 6.4996 < 8.4495] w=0.3579 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)L96.CB) [> 3.7249 = 6.2082 < 8.0707] w=0.3556 to align # Constraint # added constraint: constraint((T0298)L36.CB, (T0298)S53.CB) [> 4.0729 = 6.7882 < 8.8247] w=0.3548 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)H32.CB) [> 4.0586 = 6.7643 < 8.7936] w=0.3542 to align # Constraint # added constraint: constraint((T0298)G270.CA, (T0298)T292.CB) [> 3.7603 = 6.2671 < 8.1473] w=0.3541 to align # Constraint # added constraint: constraint((T0298)A105.CB, (T0298)P123.CB) [> 4.1139 = 6.8565 < 8.9135] w=0.3541 to align # Constraint # added constraint: constraint((T0298)E213.CB, (T0298)V233.CB) [> 3.4871 = 5.8119 < 7.5554] w=0.3541 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)R227.CB) [> 3.8191 = 6.3652 < 8.2747] w=0.3541 to align # Constraint # added constraint: constraint((T0298)N180.CB, (T0298)R191.CB) [> 3.1135 = 5.1891 < 6.7459] w=0.3541 to align # Constraint # added constraint: constraint((T0298)D205.CB, (T0298)T234.CB) [> 4.1056 = 6.8426 < 8.8954] w=0.3541 to align # Constraint # added constraint: constraint((T0298)G300.CA, (T0298)W310.CB) [> 3.6039 = 6.0065 < 7.8085] w=0.3541 to align # Constraint # added constraint: constraint((T0298)D244.CB, (T0298)V283.CB) [> 4.6632 = 7.7721 < 10.1037] w=0.3541 to align # Constraint # added constraint: constraint((T0298)G288.CA, (T0298)G319.CA) [> 4.5136 = 7.5226 < 9.7794] w=0.3541 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)P239.CB) [> 4.4290 = 7.3817 < 9.5962] w=0.3541 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)I236.CB) [> 3.3756 = 5.6260 < 7.3138] w=0.3541 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)Q237.CB) [> 4.1768 = 6.9613 < 9.0497] w=0.3541 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)A238.CB) [> 3.2195 = 5.3658 < 6.9756] w=0.3541 to align # Constraint # added constraint: constraint((T0298)D60.CB, (T0298)R85.CB) [> 2.9381 = 4.8967 < 6.3658] w=0.3529 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)S66.CB) [> 3.7008 = 6.1680 < 8.0184] w=0.3511 to align # Constraint # added constraint: constraint((T0298)A8.CB, (T0298)A38.CB) [> 4.2564 = 7.0940 < 9.2222] w=0.3485 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)A38.CB) [> 4.1662 = 6.9437 < 9.0268] w=0.3485 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)H35.CB) [> 3.8403 = 6.4005 < 8.3207] w=0.3447 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L24.CB) [> 4.4524 = 7.4207 < 9.6470] w=0.3441 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)F241.CB) [> 3.4197 = 5.6996 < 7.4095] w=0.3415 to align # Constraint # added constraint: constraint((T0298)G288.CA, (T0298)R317.CB) [> 3.9406 = 6.5676 < 8.5379] w=0.3415 to align # Constraint # added constraint: constraint((T0298)R87.CB, (T0298)L125.CB) [> 4.4025 = 7.3376 < 9.5388] w=0.3415 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)V316.CB) [> 3.4920 = 5.8201 < 7.5661] w=0.3415 to align # Constraint # added constraint: constraint((T0298)E101.CB, (T0298)S127.CB) [> 2.8010 = 4.6683 < 6.0688] w=0.3415 to align # Constraint # added constraint: constraint((T0298)E291.CB, (T0298)D314.CB) [> 4.1799 = 6.9665 < 9.0565] w=0.3415 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)Q192.CB) [> 3.0497 = 5.0829 < 6.6077] w=0.3415 to align # Constraint # added constraint: constraint((T0298)L24.CB, (T0298)R33.CB) [> 4.2741 = 7.1235 < 9.2605] w=0.3390 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)A38.CB) [> 3.0730 = 5.1217 < 6.6582] w=0.3359 to align # Constraint # added constraint: constraint((T0298)G98.CA, (T0298)C130.CB) [> 3.7732 = 6.2887 < 8.1753] w=0.3359 to align # Constraint # added constraint: constraint((T0298)V59.CB, (T0298)R85.CB) [> 2.4086 = 4.0143 < 5.2186] w=0.3352 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)R55.CB) [> 4.1108 = 6.8513 < 8.9066] w=0.3333 to align # Constraint # added constraint: constraint((T0298)R33.CB, (T0298)L54.CB) [> 3.8068 = 6.3446 < 8.2480] w=0.3328 to align # Constraint # added constraint: constraint((T0298)V297.CB, (T0298)L309.CB) [> 3.4634 = 5.7723 < 7.5040] w=0.3327 to align # Constraint # added constraint: constraint((T0298)V59.CB, (T0298)A86.CB) [> 3.0176 = 5.0294 < 6.5382] w=0.3327 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)S127.CB) [> 4.0930 = 6.8217 < 8.8681] w=0.3303 to align # Constraint # added constraint: constraint((T0298)V21.CB, (T0298)M47.CB) [> 4.0044 = 6.6740 < 8.6762] w=0.3302 to align # Constraint # added constraint: constraint((T0298)A131.CB, (T0298)A320.CB) [> 3.2064 = 5.3441 < 6.9473] w=0.3290 to align # Constraint # added constraint: constraint((T0298)D290.CB, (T0298)R317.CB) [> 3.3347 = 5.5579 < 7.2253] w=0.3288 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)T292.CB) [> 4.5753 = 7.6254 < 9.9130] w=0.3288 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)G284.CA) [> 4.6325 = 7.7209 < 10.0372] w=0.3288 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)L223.CB) [> 3.4115 = 5.6858 < 7.3915] w=0.3288 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)I216.CB) [> 3.9153 = 6.5255 < 8.4832] w=0.3288 to align # Constraint # added constraint: constraint((T0298)A83.CB, (T0298)D95.CB) [> 4.3127 = 7.1878 < 9.3442] w=0.3288 to align # Constraint # added constraint: constraint((T0298)L188.CB, (T0298)A199.CB) [> 3.4692 = 5.7820 < 7.5166] w=0.3288 to align # Constraint # added constraint: constraint((T0298)S92.CB, (T0298)I332.CB) [> 4.0997 = 6.8328 < 8.8827] w=0.3170 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)Q237.CB) [> 4.6988 = 7.8313 < 10.1807] w=0.3162 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)A222.CB) [> 3.1597 = 5.2662 < 6.8461] w=0.3162 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)G229.CA) [> 3.7992 = 6.3320 < 8.2316] w=0.3162 to align # Constraint # added constraint: constraint((T0298)L250.CB, (T0298)N308.CB) [> 4.6364 = 7.7273 < 10.0454] w=0.3162 to align # Constraint # added constraint: constraint((T0298)L147.CB, (T0298)A260.CB) [> 4.5906 = 7.6511 < 9.9464] w=0.3162 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)A194.CB) [> 4.0277 = 6.7129 < 8.7267] w=0.3162 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)P239.CB) [> 4.5713 = 7.6189 < 9.9045] w=0.3162 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)D95.CB) [> 4.2108 = 7.0180 < 9.1234] w=0.3162 to align # Constraint # added constraint: constraint((T0298)A43.CB, (T0298)V56.CB) [> 3.4906 = 5.8177 < 7.5630] w=0.3157 to align # Constraint # added constraint: constraint((T0298)P280.CB, (T0298)R298.CB) [> 3.9209 = 6.5348 < 8.4952] w=0.3150 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)L100.CB) [> 3.7491 = 6.2485 < 8.1231] w=0.3138 to align # Constraint # added constraint: constraint((T0298)P142.CB, (T0298)A267.CB) [> 4.1936 = 6.9894 < 9.0862] w=0.3035 to align # Constraint # added constraint: constraint((T0298)L100.CB, (T0298)L125.CB) [> 3.9563 = 6.5938 < 8.5719] w=0.3035 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)S162.CB) [> 4.5301 = 7.5501 < 9.8152] w=0.3035 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)L223.CB) [> 3.3979 = 5.6632 < 7.3622] w=0.3035 to align # Constraint # added constraint: constraint((T0298)E254.CB, (T0298)C305.CB) [> 4.4162 = 7.3603 < 9.5683] w=0.3035 to align # Constraint # added constraint: constraint((T0298)H209.CB, (T0298)V233.CB) [> 3.4578 = 5.7630 < 7.4919] w=0.3035 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)V312.CB) [> 4.1238 = 6.8730 < 8.9349] w=0.3035 to align # Constraint # added constraint: constraint((T0298)V78.CB, (T0298)A99.CB) [> 3.9326 = 6.5543 < 8.5206] w=0.3035 to align # Constraint # added constraint: constraint((T0298)L144.CB, (T0298)R227.CB) [> 3.8114 = 6.3523 < 8.2580] w=0.3035 to align # Constraint # added constraint: constraint((T0298)L231.CB, (T0298)L250.CB) [> 4.5452 = 7.5753 < 9.8479] w=0.3035 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)H35.CB) [> 3.3585 = 5.5975 < 7.2767] w=0.3030 to align # Constraint # added constraint: constraint((T0298)H32.CB, (T0298)V325.CB) [> 4.0985 = 6.8308 < 8.8800] w=0.3011 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)S245.CB) [> 4.6469 = 7.7448 < 10.0682] w=0.2972 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)L36.CB) [> 3.6185 = 6.0309 < 7.8401] w=0.2967 to align # Constraint # added constraint: constraint((T0298)R46.CB, (T0298)V56.CB) [> 3.8335 = 6.3892 < 8.3060] w=0.2960 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)R55.CB) [> 3.8385 = 6.3975 < 8.3167] w=0.2954 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)L309.CB) [> 3.6174 = 6.0291 < 7.8378] w=0.2947 to align # Constraint # added constraint: constraint((T0298)A43.CB, (T0298)S53.CB) [> 3.4763 = 5.7938 < 7.5320] w=0.2947 to align # Constraint # added constraint: constraint((T0298)Q151.CB, (T0298)G229.CA) [> 4.0406 = 6.7343 < 8.7545] w=0.2934 to align # Constraint # added constraint: constraint((T0298)A38.CB, (T0298)D58.CB) [> 4.0016 = 6.6694 < 8.6702] w=0.2910 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)V283.CB) [> 4.5543 = 7.5906 < 9.8678] w=0.2909 to align # Constraint # added constraint: constraint((T0298)E101.CB, (T0298)P129.CB) [> 4.2958 = 7.1596 < 9.3075] w=0.2909 to align # Constraint # added constraint: constraint((T0298)P123.CB, (T0298)L331.CB) [> 3.7698 = 6.2830 < 8.1679] w=0.2909 to align # Constraint # added constraint: constraint((T0298)T262.CB, (T0298)W273.CB) [> 3.7887 = 6.3144 < 8.2087] w=0.2909 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)L309.CB) [> 3.6019 = 6.0032 < 7.8042] w=0.2909 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)I311.CB) [> 3.6796 = 6.1326 < 7.9724] w=0.2909 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)A133.CB) [> 4.2952 = 7.1587 < 9.3063] w=0.2909 to align # Constraint # added constraint: constraint((T0298)L144.CB, (T0298)E226.CB) [> 3.9311 = 6.5518 < 8.5174] w=0.2909 to align # Constraint # added constraint: constraint((T0298)V274.CB, (T0298)T292.CB) [> 4.0722 = 6.7869 < 8.8230] w=0.2909 to align # Constraint # added constraint: constraint((T0298)G277.CA, (T0298)V297.CB) [> 3.5920 = 5.9867 < 7.7827] w=0.2909 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)I193.CB) [> 3.7579 = 6.2632 < 8.1422] w=0.2909 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)L36.CB) [> 3.5198 = 5.8663 < 7.6262] w=0.2827 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)W310.CB) [> 4.2029 = 7.0048 < 9.1062] w=0.2821 to align # Constraint # added constraint: constraint((T0298)N113.CB, (T0298)L223.CB) [> 3.0499 = 5.0833 < 6.6082] w=0.2782 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)V316.CB) [> 4.7037 = 7.8395 < 10.1913] w=0.2782 to align # Constraint # added constraint: constraint((T0298)V261.CB, (T0298)A302.CB) [> 4.1097 = 6.8495 < 8.9043] w=0.2782 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)R317.CB) [> 4.5618 = 7.6030 < 9.8839] w=0.2782 to align # Constraint # added constraint: constraint((T0298)V59.CB, (T0298)E77.CB) [> 3.6834 = 6.1390 < 7.9807] w=0.2782 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)E51.CB) [> 3.6625 = 6.1041 < 7.9353] w=0.2782 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)I212.CB) [> 2.9444 = 4.9074 < 6.3796] w=0.2782 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)D58.CB) [> 4.0448 = 6.7413 < 8.7636] w=0.2707 to align # Constraint # added constraint: constraint((T0298)R298.CB, (T0298)N308.CB) [> 3.4136 = 5.6893 < 7.3961] w=0.2694 to align # Constraint # added constraint: constraint((T0298)E18.CB, (T0298)A50.CB) [> 3.9771 = 6.6286 < 8.6171] w=0.2694 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)R33.CB) [> 4.4662 = 7.4437 < 9.6768] w=0.2683 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)A321.CB) [> 4.2576 = 7.0960 < 9.2247] w=0.2656 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)G164.CA) [> 3.6778 = 6.1297 < 7.9686] w=0.2656 to align # Constraint # added constraint: constraint((T0298)S79.CB, (T0298)A105.CB) [> 4.2992 = 7.1653 < 9.3149] w=0.2656 to align # Constraint # added constraint: constraint((T0298)F217.CB, (T0298)N232.CB) [> 3.5951 = 5.9918 < 7.7893] w=0.2656 to align # Constraint # added constraint: constraint((T0298)S210.CB, (T0298)V233.CB) [> 2.5869 = 4.3115 < 5.6049] w=0.2656 to align # Constraint # added constraint: constraint((T0298)E135.CB, (T0298)L246.CB) [> 3.2634 = 5.4390 < 7.0707] w=0.2656 to align # Constraint # added constraint: constraint((T0298)Q200.CB, (T0298)C235.CB) [> 3.6248 = 6.0414 < 7.8538] w=0.2656 to align # Constraint # added constraint: constraint((T0298)V297.CB, (T0298)V307.CB) [> 3.9615 = 6.6026 < 8.5833] w=0.2656 to align # Constraint # added constraint: constraint((T0298)S79.CB, (T0298)S103.CB) [> 3.2378 = 5.3963 < 7.0152] w=0.2656 to align # Constraint # added constraint: constraint((T0298)L100.CB, (T0298)P129.CB) [> 3.7053 = 6.1755 < 8.0281] w=0.2656 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)I212.CB) [> 3.8082 = 6.3470 < 8.2511] w=0.2656 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)F72.CB) [> 4.6353 = 7.7256 < 10.0432] w=0.2638 to align # Constraint # added constraint: constraint((T0298)E135.CB, (T0298)S313.CB) [> 2.4536 = 4.0893 < 5.3161] w=0.2568 to align # Constraint # added constraint: constraint((T0298)E135.CB, (T0298)I311.CB) [> 3.4613 = 5.7689 < 7.4995] w=0.2568 to align # Constraint # added constraint: constraint((T0298)V297.CB, (T0298)N308.CB) [> 3.9347 = 6.5578 < 8.5252] w=0.2568 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A38.CB) [> 3.5749 = 5.9581 < 7.7455] w=0.2567 to align # Constraint # added constraint: constraint((T0298)P4.CB, (T0298)L31.CB) [> 3.3930 = 5.6549 < 7.3514] w=0.2556 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)L37.CB) [> 3.7506 = 6.2511 < 8.1264] w=0.2555 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)S53.CB) [> 3.5282 = 5.8804 < 7.6445] w=0.2542 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)V93.CB) [> 4.5810 = 7.6350 < 9.9255] w=0.2538 to align # Constraint # added constraint: constraint((T0298)A83.CB, (T0298)A105.CB) [> 4.2581 = 7.0968 < 9.2259] w=0.2529 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)N323.CB) [> 3.6109 = 6.0181 < 7.8236] w=0.2529 to align # Constraint # added constraint: constraint((T0298)L258.CB, (T0298)A302.CB) [> 2.9012 = 4.8354 < 6.2860] w=0.2529 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)C235.CB) [> 3.5043 = 5.8405 < 7.5926] w=0.2529 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)S53.CB) [> 3.5693 = 5.9488 < 7.7334] w=0.2529 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)R317.CB) [> 4.6692 = 7.7820 < 10.1165] w=0.2529 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)W273.CB) [> 3.4581 = 5.7634 < 7.4924] w=0.2529 to align # Constraint # added constraint: constraint((T0298)E272.CB, (T0298)D290.CB) [> 4.3223 = 7.2039 < 9.3651] w=0.2529 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)S97.CB) [> 4.4214 = 7.3691 < 9.5798] w=0.2529 to align # Constraint # added constraint: constraint((T0298)L20.CB, (T0298)S97.CB) [> 4.4062 = 7.3436 < 9.5467] w=0.2529 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)Q192.CB) [> 3.8922 = 6.4869 < 8.4330] w=0.2529 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)A156.CB) [> 3.0955 = 5.1591 < 6.7068] w=0.2529 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)L36.CB) [> 2.9799 = 4.9665 < 6.4564] w=0.2524 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)N308.CB) [> 3.8774 = 6.4623 < 8.4010] w=0.2454 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A43.CB) [> 3.5731 = 5.9552 < 7.7418] w=0.2454 to align # Constraint # added constraint: constraint((T0298)R298.CB, (T0298)V307.CB) [> 4.3462 = 7.2436 < 9.4167] w=0.2441 to align # Constraint # added constraint: constraint((T0298)A43.CB, (T0298)G57.CA) [> 3.6306 = 6.0511 < 7.8664] w=0.2441 to align # Constraint # added constraint: constraint((T0298)H82.CB, (T0298)V93.CB) [> 4.4092 = 7.3487 < 9.5533] w=0.2412 to align # Constraint # added constraint: constraint((T0298)S111.CB, (T0298)T268.CB) [> 4.4421 = 7.4035 < 9.6245] w=0.2403 to align # Constraint # added constraint: constraint((T0298)G270.CA, (T0298)D290.CB) [> 4.0924 = 6.8207 < 8.8670] w=0.2403 to align # Constraint # added constraint: constraint((T0298)A114.CB, (T0298)L326.CB) [> 4.4680 = 7.4467 < 9.6808] w=0.2403 to align # Constraint # added constraint: constraint((T0298)Q200.CB, (T0298)Q237.CB) [> 3.9168 = 6.5280 < 8.4864] w=0.2403 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L246.CB) [> 4.1127 = 6.8545 < 8.9109] w=0.2403 to align # Constraint # added constraint: constraint((T0298)E177.CB, (T0298)D190.CB) [> 3.3819 = 5.6365 < 7.3274] w=0.2403 to align # Constraint # added constraint: constraint((T0298)S39.CB, (T0298)R55.CB) [> 3.9906 = 6.6510 < 8.6463] w=0.2403 to align # Constraint # added constraint: constraint((T0298)A299.CB, (T0298)L309.CB) [> 4.0567 = 6.7613 < 8.7896] w=0.2403 to align # Constraint # added constraint: constraint((T0298)V261.CB, (T0298)G300.CA) [> 4.0279 = 6.7132 < 8.7271] w=0.2403 to align # Constraint # added constraint: constraint((T0298)S162.CB, (T0298)A176.CB) [> 4.3530 = 7.2550 < 9.4315] w=0.2403 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L158.CB) [> 4.2021 = 7.0035 < 9.1046] w=0.2403 to align # Constraint # added constraint: constraint((T0298)M47.CB, (T0298)V56.CB) [> 3.5238 = 5.8730 < 7.6349] w=0.2403 to align # Constraint # added constraint: constraint((T0298)R27.CB, (T0298)L322.CB) [> 4.3535 = 7.2558 < 9.4325] w=0.2327 to align # Constraint # added constraint: constraint((T0298)R33.CB, (T0298)S66.CB) [> 4.0414 = 6.7357 < 8.7563] w=0.2327 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)R317.CB) [> 3.5718 = 5.9531 < 7.7390] w=0.2315 to align # Constraint # added constraint: constraint((T0298)R150.CB, (T0298)G229.CA) [> 4.1859 = 6.9765 < 9.0695] w=0.2277 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)A105.CB) [> 3.6971 = 6.1619 < 8.0105] w=0.2277 to align # Constraint # added constraint: constraint((T0298)S15.CB, (T0298)R165.CB) [> 3.4627 = 5.7712 < 7.5025] w=0.2277 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)F242.CB) [> 3.1025 = 5.1708 < 6.7220] w=0.2277 to align # Constraint # added constraint: constraint((T0298)V274.CB, (T0298)V297.CB) [> 3.9679 = 6.6132 < 8.5972] w=0.2277 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)C235.CB) [> 4.3328 = 7.2214 < 9.3878] w=0.2277 to align # Constraint # added constraint: constraint((T0298)Q200.CB, (T0298)I236.CB) [> 4.4290 = 7.3816 < 9.5961] w=0.2277 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)A176.CB) [> 3.0305 = 5.0508 < 6.5661] w=0.2277 to align # Constraint # added constraint: constraint((T0298)A176.CB, (T0298)L198.CB) [> 4.5089 = 7.5149 < 9.7693] w=0.2277 to align # Constraint # added constraint: constraint((T0298)L287.CB, (T0298)V316.CB) [> 4.5963 = 7.6604 < 9.9586] w=0.2277 to align # Constraint # added constraint: constraint((T0298)D278.CB, (T0298)R298.CB) [> 3.7856 = 6.3094 < 8.2022] w=0.2277 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)A122.CB) [> 4.1898 = 6.9830 < 9.0779] w=0.2276 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)S39.CB) [> 3.7102 = 6.1837 < 8.0388] w=0.2182 to align # Constraint # added constraint: constraint((T0298)G68.CA, (T0298)I332.CB) [> 4.0219 = 6.7032 < 8.7142] w=0.2158 to align # Constraint # added constraint: constraint((T0298)F217.CB, (T0298)G229.CA) [> 3.8887 = 6.4811 < 8.4255] w=0.2150 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L326.CB) [> 4.6708 = 7.7847 < 10.1201] w=0.2150 to align # Constraint # added constraint: constraint((T0298)E276.CB, (T0298)R298.CB) [> 3.7736 = 6.2894 < 8.1762] w=0.2150 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)V220.CB) [> 3.4002 = 5.6670 < 7.3671] w=0.2150 to align # Constraint # added constraint: constraint((T0298)E213.CB, (T0298)L231.CB) [> 3.3416 = 5.5694 < 7.2402] w=0.2150 to align # Constraint # added constraint: constraint((T0298)G98.CA, (T0298)A320.CB) [> 4.5901 = 7.6502 < 9.9453] w=0.2150 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)M47.CB) [> 4.3765 = 7.2942 < 9.4825] w=0.2150 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)L34.CB) [> 4.3676 = 7.2793 < 9.4631] w=0.2150 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)H35.CB) [> 4.0732 = 6.7886 < 8.8252] w=0.2150 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)I216.CB) [> 4.0051 = 6.6752 < 8.6777] w=0.2144 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)L34.CB) [> 4.2759 = 7.1265 < 9.2645] w=0.2037 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L223.CB) [> 4.2257 = 7.0429 < 9.1558] w=0.2024 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)L309.CB) [> 4.7214 = 7.8689 < 10.2296] w=0.2024 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)H209.CB) [> 2.8869 = 4.8115 < 6.2549] w=0.2024 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)R215.CB) [> 4.1404 = 6.9007 < 8.9710] w=0.2024 to align # Constraint # added constraint: constraint((T0298)A38.CB, (T0298)L54.CB) [> 3.0501 = 5.0834 < 6.6085] w=0.2024 to align # Constraint # added constraint: constraint((T0298)V104.CB, (T0298)P123.CB) [> 3.7936 = 6.3227 < 8.2195] w=0.2024 to align # Constraint # added constraint: constraint((T0298)Y279.CB, (T0298)R298.CB) [> 4.5437 = 7.5728 < 9.8447] w=0.2024 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)E213.CB) [> 4.3482 = 7.2470 < 9.4211] w=0.2018 to align # Constraint # added constraint: constraint((T0298)H32.CB, (T0298)V67.CB) [> 3.4142 = 5.6903 < 7.3974] w=0.2012 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)M47.CB) [> 4.2493 = 7.0821 < 9.2068] w=0.2012 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)T249.CB) [> 4.5323 = 7.5539 < 9.8200] w=0.1961 to align # Constraint # added constraint: constraint((T0298)V21.CB, (T0298)A50.CB) [> 4.0700 = 6.7833 < 8.8182] w=0.1935 to align # Constraint # added constraint: constraint((T0298)L24.CB, (T0298)F71.CB) [> 4.5859 = 7.6432 < 9.9362] w=0.1918 to align # Constraint # added constraint: constraint((T0298)P102.CB, (T0298)A222.CB) [> 4.1537 = 6.9229 < 8.9997] w=0.1897 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)V294.CB) [> 4.6379 = 7.7298 < 10.0488] w=0.1897 to align # Constraint # added constraint: constraint((T0298)R214.CB, (T0298)P230.CB) [> 4.2443 = 7.0739 < 9.1960] w=0.1897 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)G243.CA) [> 4.4704 = 7.4507 < 9.6860] w=0.1897 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)V59.CB) [> 4.5575 = 7.5958 < 9.8746] w=0.1897 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)H209.CB) [> 4.0273 = 6.7123 < 8.7259] w=0.1897 to align # Constraint # added constraint: constraint((T0298)S210.CB, (T0298)L231.CB) [> 2.9776 = 4.9626 < 6.4514] w=0.1897 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A73.CB) [> 4.5135 = 7.5224 < 9.7792] w=0.1897 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)Q237.CB) [> 4.6882 = 7.8137 < 10.1579] w=0.1897 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)K318.CB) [> 4.6470 = 7.7450 < 10.0685] w=0.1897 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)V108.CB) [> 4.4029 = 7.3383 < 9.5397] w=0.1891 to align # Constraint # added constraint: constraint((T0298)P4.CB, (T0298)R33.CB) [> 3.0529 = 5.0882 < 6.6146] w=0.1872 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)H35.CB) [> 3.1077 = 5.1795 < 6.7334] w=0.1816 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)R46.CB) [> 3.6022 = 6.0037 < 7.8049] w=0.1809 to align # Constraint # added constraint: constraint((T0298)V59.CB, (T0298)A74.CB) [> 4.3850 = 7.3084 < 9.5009] w=0.1771 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L223.CB) [> 4.3793 = 7.2989 < 9.4885] w=0.1771 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)G98.CA) [> 3.7188 = 6.1981 < 8.0575] w=0.1771 to align # Constraint # added constraint: constraint((T0298)E135.CB, (T0298)V312.CB) [> 4.5760 = 7.6267 < 9.9147] w=0.1771 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)I216.CB) [> 3.5462 = 5.9103 < 7.6834] w=0.1771 to align # Constraint # added constraint: constraint((T0298)A181.CB, (T0298)Q192.CB) [> 4.5537 = 7.5896 < 9.8664] w=0.1771 to align # Constraint # added constraint: constraint((T0298)L36.CB, (T0298)M47.CB) [> 3.8619 = 6.4365 < 8.3674] w=0.1771 to align # Constraint # added constraint: constraint((T0298)V104.CB, (T0298)F124.CB) [> 3.7526 = 6.2544 < 8.1307] w=0.1771 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)L34.CB) [> 3.1785 = 5.2975 < 6.8868] w=0.1765 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)R46.CB) [> 4.1531 = 6.9218 < 8.9984] w=0.1682 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)S127.CB) [> 4.3781 = 7.2968 < 9.4858] w=0.1644 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)S162.CB) [> 4.6827 = 7.8044 < 10.1458] w=0.1644 to align # Constraint # added constraint: constraint((T0298)N113.CB, (T0298)G225.CA) [> 4.3507 = 7.2512 < 9.4265] w=0.1644 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)V312.CB) [> 3.6159 = 6.0265 < 7.8344] w=0.1644 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)G319.CA) [> 4.4766 = 7.4610 < 9.6993] w=0.1644 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)S313.CB) [> 4.3380 = 7.2300 < 9.3991] w=0.1644 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)V168.CB) [> 4.3879 = 7.3131 < 9.5070] w=0.1644 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)F217.CB) [> 3.7939 = 6.3231 < 8.2201] w=0.1638 to align # Constraint # added constraint: constraint((T0298)P4.CB, (T0298)H32.CB) [> 3.7668 = 6.2780 < 8.1614] w=0.1619 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)V248.CB) [> 4.6964 = 7.8274 < 10.1756] w=0.1607 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)L37.CB) [> 3.4592 = 5.7653 < 7.4949] w=0.1563 to align # Constraint # added constraint: constraint((T0298)P106.CB, (T0298)F124.CB) [> 4.2822 = 7.1370 < 9.2781] w=0.1518 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)L322.CB) [> 3.9330 = 6.5551 < 8.5216] w=0.1518 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)V132.CB) [> 4.6564 = 7.7607 < 10.0890] w=0.1518 to align # Constraint # added constraint: constraint((T0298)F241.CB, (T0298)L287.CB) [> 4.2694 = 7.1157 < 9.2504] w=0.1518 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)V240.CB) [> 4.5271 = 7.5452 < 9.8088] w=0.1518 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)V240.CB) [> 4.2224 = 7.0374 < 9.1486] w=0.1518 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)A321.CB) [> 4.3216 = 7.2027 < 9.3635] w=0.1518 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)A134.CB) [> 4.1819 = 6.9698 < 9.0607] w=0.1518 to align # Constraint # added constraint: constraint((T0298)R214.CB, (T0298)N232.CB) [> 3.0992 = 5.1653 < 6.7149] w=0.1518 to align # Constraint # added constraint: constraint((T0298)Q200.CB, (T0298)T234.CB) [> 4.2333 = 7.0556 < 9.1723] w=0.1518 to align # Constraint # added constraint: constraint((T0298)L100.CB, (T0298)I212.CB) [> 3.6012 = 6.0019 < 7.8025] w=0.1518 to align # Constraint # added constraint: constraint((T0298)G202.CA, (T0298)T234.CB) [> 4.0063 = 6.6771 < 8.6803] w=0.1518 to align # Constraint # added constraint: constraint((T0298)A70.CB, (T0298)L96.CB) [> 4.2877 = 7.1462 < 9.2900] w=0.1518 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)L37.CB) [> 4.6329 = 7.7215 < 10.0380] w=0.1518 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)I332.CB) [> 4.4431 = 7.4052 < 9.6268] w=0.1518 to align # Constraint # added constraint: constraint((T0298)G17.CA, (T0298)L96.CB) [> 4.5690 = 7.6151 < 9.8996] w=0.1518 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)A75.CB) [> 4.7028 = 7.8380 < 10.1894] w=0.1500 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)T234.CB) [> 4.1807 = 6.9678 < 9.0582] w=0.1429 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)F49.CB) [> 4.2332 = 7.0553 < 9.1719] w=0.1398 to align # Constraint # added constraint: constraint((T0298)A121.CB, (T0298)L331.CB) [> 4.2462 = 7.0771 < 9.2002] w=0.1391 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)Q237.CB) [> 3.6182 = 6.0304 < 7.8394] w=0.1391 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)L163.CB) [> 4.6237 = 7.7062 < 10.0180] w=0.1391 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)L171.CB) [> 2.7777 = 4.6295 < 6.0184] w=0.1391 to align # Constraint # added constraint: constraint((T0298)L171.CB, (T0298)P239.CB) [> 3.3734 = 5.6223 < 7.3090] w=0.1391 to align # Constraint # added constraint: constraint((T0298)G202.CA, (T0298)V233.CB) [> 3.7276 = 6.2126 < 8.0764] w=0.1391 to align # Constraint # added constraint: constraint((T0298)G202.CA, (T0298)C235.CB) [> 3.2098 = 5.3497 < 6.9546] w=0.1391 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)G98.CA) [> 3.9406 = 6.5676 < 8.5379] w=0.1391 to align # Constraint # added constraint: constraint((T0298)R33.CB, (T0298)E51.CB) [> 3.9294 = 6.5490 < 8.5137] w=0.1391 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)I216.CB) [> 3.3025 = 5.5042 < 7.1555] w=0.1380 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)L36.CB) [> 4.3244 = 7.2073 < 9.3695] w=0.1341 to align # Constraint # added constraint: constraint((T0298)P4.CB, (T0298)F29.CB) [> 3.7680 = 6.2801 < 8.1641] w=0.1316 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)A50.CB) [> 4.5218 = 7.5364 < 9.7973] w=0.1297 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)V325.CB) [> 4.4057 = 7.3429 < 9.5457] w=0.1291 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)V78.CB) [> 4.5569 = 7.5948 < 9.8732] w=0.1273 to align # Constraint # added constraint: constraint((T0298)I212.CB, (T0298)C235.CB) [> 2.7630 = 4.6050 < 5.9865] w=0.1265 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)L125.CB) [> 4.5875 = 7.6458 < 9.9396] w=0.1265 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L330.CB) [> 4.5202 = 7.5336 < 9.7937] w=0.1265 to align # Constraint # added constraint: constraint((T0298)L37.CB, (T0298)G48.CA) [> 3.9077 = 6.5129 < 8.4668] w=0.1265 to align # Constraint # added constraint: constraint((T0298)S162.CB, (T0298)F241.CB) [> 3.9524 = 6.5873 < 8.5635] w=0.1265 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)V201.CB) [> 3.8549 = 6.4248 < 8.3522] w=0.1265 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)L158.CB) [> 4.4116 = 7.3526 < 9.5584] w=0.1265 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)L125.CB) [> 4.2502 = 7.0836 < 9.2087] w=0.1265 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)I212.CB) [> 4.0949 = 6.8249 < 8.8723] w=0.1265 to align # Constraint # added constraint: constraint((T0298)L171.CB, (T0298)A194.CB) [> 3.5948 = 5.9913 < 7.7887] w=0.1265 to align # Constraint # added constraint: constraint((T0298)L171.CB, (T0298)I193.CB) [> 3.1656 = 5.2760 < 6.8588] w=0.1265 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)F49.CB) [> 4.6330 = 7.7217 < 10.0382] w=0.1265 to align # Constraint # added constraint: constraint((T0298)V112.CB, (T0298)F217.CB) [> 3.9329 = 6.5548 < 8.5213] w=0.1265 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)G98.CA) [> 4.0470 = 6.7450 < 8.7685] w=0.1265 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)A181.CB) [> 2.8132 = 4.6887 < 6.0953] w=0.1265 to align # Constraint # added constraint: constraint((T0298)L171.CB, (T0298)F189.CB) [> 4.5800 = 7.6334 < 9.9234] w=0.1265 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)M47.CB) [> 4.0105 = 6.6842 < 8.6895] w=0.1265 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)Q237.CB) [> 4.4918 = 7.4864 < 9.7323] w=0.1253 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)M47.CB) [> 4.2620 = 7.1034 < 9.2344] w=0.1176 to align # Constraint # added constraint: constraint((T0298)A75.CB, (T0298)L96.CB) [> 4.1395 = 6.8991 < 8.9689] w=0.1138 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)G164.CA) [> 4.1235 = 6.8725 < 8.9343] w=0.1138 to align # Constraint # added constraint: constraint((T0298)T175.CB, (T0298)P239.CB) [> 4.1599 = 6.9332 < 9.0132] w=0.1138 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)S128.CB) [> 4.5796 = 7.6327 < 9.9225] w=0.1138 to align # Constraint # added constraint: constraint((T0298)Q120.CB, (T0298)L327.CB) [> 3.9287 = 6.5478 < 8.5121] w=0.1138 to align # Constraint # added constraint: constraint((T0298)P280.CB, (T0298)W310.CB) [> 3.4942 = 5.8237 < 7.5708] w=0.1138 to align # Constraint # added constraint: constraint((T0298)Y279.CB, (T0298)G295.CA) [> 3.8886 = 6.4810 < 8.4253] w=0.1138 to align # Constraint # added constraint: constraint((T0298)P255.CB, (T0298)D303.CB) [> 4.6083 = 7.6805 < 9.9846] w=0.1138 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)A238.CB) [> 4.4350 = 7.3917 < 9.6091] w=0.1138 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)F242.CB) [> 4.7145 = 7.8576 < 10.2148] w=0.1138 to align # Constraint # added constraint: constraint((T0298)S162.CB, (T0298)V201.CB) [> 4.5913 = 7.6521 < 9.9477] w=0.1138 to align # Constraint # added constraint: constraint((T0298)G167.CA, (T0298)F189.CB) [> 3.9969 = 6.6615 < 8.6599] w=0.1138 to align # Constraint # added constraint: constraint((T0298)V168.CB, (T0298)F241.CB) [> 3.1182 = 5.1971 < 6.7562] w=0.1138 to align # Constraint # added constraint: constraint((T0298)V168.CB, (T0298)F242.CB) [> 4.4920 = 7.4867 < 9.7327] w=0.1138 to align # Constraint # added constraint: constraint((T0298)L188.CB, (T0298)Q200.CB) [> 3.7821 = 6.3035 < 8.1945] w=0.1138 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)F124.CB) [> 4.4367 = 7.3945 < 9.6129] w=0.1138 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)V233.CB) [> 4.3608 = 7.2681 < 9.4485] w=0.1138 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)P129.CB) [> 3.8192 = 6.3653 < 8.2748] w=0.1128 to align # Constraint # added constraint: constraint((T0298)A181.CB, (T0298)R191.CB) [> 4.3178 = 7.1964 < 9.3553] w=0.1050 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A50.CB) [> 3.2273 = 5.3789 < 6.9926] w=0.1044 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)S127.CB) [> 4.3666 = 7.2776 < 9.4609] w=0.1026 to align # Constraint # added constraint: constraint((T0298)G164.CA, (T0298)F189.CB) [> 3.5896 = 5.9827 < 7.7776] w=0.1024 to align # Constraint # added constraint: constraint((T0298)L163.CB, (T0298)P183.CB) [> 4.6863 = 7.8105 < 10.1536] w=0.1012 to align # Constraint # added constraint: constraint((T0298)T146.CB, (T0298)A253.CB) [> 4.2235 = 7.0392 < 9.1510] w=0.1012 to align # Constraint # added constraint: constraint((T0298)A286.CB, (T0298)K318.CB) [> 4.3411 = 7.2352 < 9.4058] w=0.1012 to align # Constraint # added constraint: constraint((T0298)P186.CB, (T0298)P239.CB) [> 3.6222 = 6.0371 < 7.8482] w=0.1012 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)V282.CB) [> 3.5587 = 5.9312 < 7.7105] w=0.1012 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L154.CB) [> 4.5044 = 7.5073 < 9.7595] w=0.1012 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)I236.CB) [> 4.2726 = 7.1211 < 9.2574] w=0.1012 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)I193.CB) [> 3.6328 = 6.0547 < 7.8711] w=0.1012 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)Q192.CB) [> 3.7714 = 6.2856 < 8.1713] w=0.1012 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)G202.CA) [> 4.3223 = 7.2039 < 9.3650] w=0.1012 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)E41.CB) [> 4.3696 = 7.2827 < 9.4676] w=0.1012 to align # Constraint # added constraint: constraint((T0298)F189.CB, (T0298)Q200.CB) [> 3.8053 = 6.3421 < 8.2447] w=0.1012 to align # Constraint # added constraint: constraint((T0298)P186.CB, (T0298)V201.CB) [> 4.4740 = 7.4567 < 9.6937] w=0.1012 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)R296.CB) [> 3.7374 = 6.2291 < 8.0978] w=0.0987 to align # Constraint # added constraint: constraint((T0298)G11.CA, (T0298)A40.CB) [> 4.5384 = 7.5639 < 9.8331] w=0.0924 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)V307.CB) [> 3.7645 = 6.2742 < 8.1565] w=0.0898 to align # Constraint # added constraint: constraint((T0298)L36.CB, (T0298)G48.CA) [> 3.5889 = 5.9815 < 7.7759] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V204.CB, (T0298)C235.CB) [> 3.9515 = 6.5858 < 8.5616] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)L198.CB) [> 4.7555 = 7.9259 < 10.3036] w=0.0885 to align # Constraint # added constraint: constraint((T0298)E276.CB, (T0298)A299.CB) [> 4.2629 = 7.1048 < 9.2363] w=0.0885 to align # Constraint # added constraint: constraint((T0298)L163.CB, (T0298)A181.CB) [> 4.0455 = 6.7425 < 8.7653] w=0.0885 to align # Constraint # added constraint: constraint((T0298)Y279.CB, (T0298)W310.CB) [> 4.1473 = 6.9122 < 8.9858] w=0.0885 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)T281.CB) [> 4.6249 = 7.7082 < 10.0207] w=0.0885 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)V282.CB) [> 2.5707 = 4.2844 < 5.5697] w=0.0885 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)V282.CB) [> 4.1729 = 6.9548 < 9.0412] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V240.CB, (T0298)V282.CB) [> 3.9038 = 6.5063 < 8.4582] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)I212.CB) [> 2.2904 = 3.8174 < 4.9626] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V110.CB, (T0298)I271.CB) [> 3.3461 = 5.5768 < 7.2499] w=0.0885 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)Y293.CB) [> 3.3583 = 5.5971 < 7.2763] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V108.CB, (T0298)L125.CB) [> 2.7778 = 4.6296 < 6.0185] w=0.0885 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)V282.CB) [> 4.3248 = 7.2080 < 9.3704] w=0.0885 to align # Constraint # added constraint: constraint((T0298)T175.CB, (T0298)A194.CB) [> 2.9026 = 4.8376 < 6.2889] w=0.0885 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)A203.CB) [> 4.0578 = 6.7629 < 8.7918] w=0.0885 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)G202.CA) [> 4.4694 = 7.4490 < 9.6837] w=0.0885 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)A50.CB) [> 3.4150 = 5.6917 < 7.3993] w=0.0885 to align # Constraint # added constraint: constraint((T0298)T175.CB, (T0298)F189.CB) [> 4.0347 = 6.7244 < 8.7418] w=0.0885 to align # Constraint # added constraint: constraint((T0298)V21.CB, (T0298)L54.CB) [> 3.8018 = 6.3364 < 8.2373] w=0.0885 to align # Constraint # added constraint: constraint((T0298)L36.CB, (T0298)A70.CB) [> 4.5698 = 7.6164 < 9.9013] w=0.0880 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)S128.CB) [> 4.6062 = 7.6770 < 9.9801] w=0.0836 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)P129.CB) [> 4.4682 = 7.4471 < 9.6812] w=0.0836 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)C235.CB) [> 4.6015 = 7.6691 < 9.9699] w=0.0835 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)P129.CB) [> 4.6986 = 7.8311 < 10.1804] w=0.0824 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)T234.CB) [> 3.9891 = 6.6485 < 8.6431] w=0.0785 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)C235.CB) [> 3.3424 = 5.5707 < 7.2420] w=0.0772 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)Q237.CB) [> 4.0394 = 6.7323 < 8.7520] w=0.0759 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)T175.CB) [> 3.0221 = 5.0369 < 6.5480] w=0.0759 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)L125.CB) [> 3.0943 = 5.1571 < 6.7042] w=0.0759 to align # Constraint # added constraint: constraint((T0298)A203.CB, (T0298)I216.CB) [> 3.4518 = 5.7530 < 7.4789] w=0.0759 to align # Constraint # added constraint: constraint((T0298)R191.CB, (T0298)I236.CB) [> 4.2037 = 7.0061 < 9.1079] w=0.0759 to align # Constraint # added constraint: constraint((T0298)Q192.CB, (T0298)C235.CB) [> 4.4730 = 7.4550 < 9.6915] w=0.0759 to align # Constraint # added constraint: constraint((T0298)A172.CB, (T0298)F241.CB) [> 4.5139 = 7.5231 < 9.7800] w=0.0759 to align # Constraint # added constraint: constraint((T0298)Q174.CB, (T0298)Q192.CB) [> 3.7777 = 6.2962 < 8.1850] w=0.0759 to align # Constraint # added constraint: constraint((T0298)Q174.CB, (T0298)A194.CB) [> 2.1486 = 3.5810 < 4.6553] w=0.0759 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)F195.CB) [> 3.5083 = 5.8472 < 7.6014] w=0.0759 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)V312.CB) [> 4.0567 = 6.7612 < 8.7895] w=0.0759 to align # Constraint # added constraint: constraint((T0298)C149.CB, (T0298)G225.CA) [> 3.4936 = 5.8227 < 7.5695] w=0.0759 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)G295.CA) [> 3.5696 = 5.9494 < 7.7342] w=0.0759 to align # Constraint # added constraint: constraint((T0298)V16.CB, (T0298)A75.CB) [> 4.7642 = 7.9404 < 10.3225] w=0.0759 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L231.CB) [> 4.1837 = 6.9729 < 9.0648] w=0.0759 to align # Constraint # added constraint: constraint((T0298)T281.CB, (T0298)A299.CB) [> 4.6823 = 7.8039 < 10.1450] w=0.0753 to align # Constraint # added constraint: constraint((T0298)A12.CB, (T0298)L34.CB) [> 3.2313 = 5.3855 < 7.0012] w=0.0747 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)C130.CB) [> 4.3240 = 7.2067 < 9.3687] w=0.0741 to align # Constraint # added constraint: constraint((T0298)L34.CB, (T0298)G48.CA) [> 3.7959 = 6.3265 < 8.2245] w=0.0671 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A40.CB) [> 4.0614 = 6.7690 < 8.7997] w=0.0671 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)C235.CB) [> 3.1210 = 5.2017 < 6.7621] w=0.0646 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)V233.CB) [> 4.5283 = 7.5471 < 9.8112] w=0.0646 to align # Constraint # added constraint: constraint((T0298)N180.CB, (T0298)I236.CB) [> 3.7410 = 6.2350 < 8.1055] w=0.0632 to align # Constraint # added constraint: constraint((T0298)V204.CB, (T0298)Q237.CB) [> 3.3745 = 5.6242 < 7.3114] w=0.0632 to align # Constraint # added constraint: constraint((T0298)V204.CB, (T0298)I236.CB) [> 3.9533 = 6.5888 < 8.5654] w=0.0632 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)C235.CB) [> 3.2783 = 5.4639 < 7.1030] w=0.0632 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)S313.CB) [> 4.2773 = 7.1288 < 9.2675] w=0.0632 to align # Constraint # added constraint: constraint((T0298)Y279.CB, (T0298)R296.CB) [> 4.6514 = 7.7524 < 10.0781] w=0.0632 to align # Constraint # added constraint: constraint((T0298)F241.CB, (T0298)V283.CB) [> 4.5931 = 7.6552 < 9.9517] w=0.0632 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)Q200.CB) [> 4.4248 = 7.3747 < 9.5871] w=0.0632 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)V233.CB) [> 4.4267 = 7.3778 < 9.5912] w=0.0632 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)T234.CB) [> 3.4597 = 5.7662 < 7.4960] w=0.0632 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)V233.CB) [> 3.9657 = 6.6095 < 8.5924] w=0.0632 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)T234.CB) [> 3.5419 = 5.9031 < 7.6740] w=0.0632 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)Q221.CB) [> 4.5002 = 7.5004 < 9.7505] w=0.0627 to align # Constraint # added constraint: constraint((T0298)A172.CB, (T0298)L231.CB) [> 3.6026 = 6.0043 < 7.8055] w=0.0621 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)V297.CB) [> 4.3260 = 7.2099 < 9.3729] w=0.0608 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)G295.CA) [> 4.2128 = 7.0213 < 9.1276] w=0.0608 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)V132.CB) [> 3.1716 = 5.2859 < 6.8717] w=0.0589 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)A299.CB) [> 3.7103 = 6.1838 < 8.0389] w=0.0569 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)V233.CB) [> 3.0845 = 5.1408 < 6.6830] w=0.0519 to align # Constraint # added constraint: constraint((T0298)S247.CB, (T0298)G295.CA) [> 3.7229 = 6.2049 < 8.0663] w=0.0519 to align # Constraint # added constraint: constraint((T0298)L178.CB, (T0298)P239.CB) [> 4.0178 = 6.6963 < 8.7052] w=0.0506 to align # Constraint # added constraint: constraint((T0298)A203.CB, (T0298)Q237.CB) [> 4.3505 = 7.2509 < 9.4261] w=0.0506 to align # Constraint # added constraint: constraint((T0298)A74.CB, (T0298)L96.CB) [> 4.7523 = 7.9204 < 10.2966] w=0.0506 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)L178.CB) [> 3.7125 = 6.1874 < 8.0437] w=0.0506 to align # Constraint # added constraint: constraint((T0298)V204.CB, (T0298)V233.CB) [> 3.4531 = 5.7551 < 7.4816] w=0.0506 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)V282.CB) [> 4.6984 = 7.8306 < 10.1798] w=0.0506 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)D190.CB) [> 3.4274 = 5.7123 < 7.4261] w=0.0506 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)R191.CB) [> 4.0036 = 6.6726 < 8.6744] w=0.0506 to align # Constraint # added constraint: constraint((T0298)V261.CB, (T0298)R296.CB) [> 3.4673 = 5.7789 < 7.5125] w=0.0506 to align # Constraint # added constraint: constraint((T0298)Q192.CB, (T0298)Q237.CB) [> 4.6870 = 7.8117 < 10.1553] w=0.0506 to align # Constraint # added constraint: constraint((T0298)R187.CB, (T0298)A199.CB) [> 3.5205 = 5.8676 < 7.6278] w=0.0506 to align # Constraint # added constraint: constraint((T0298)Q151.CB, (T0298)A286.CB) [> 4.3405 = 7.2342 < 9.4044] w=0.0506 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)I193.CB) [> 3.7775 = 6.2959 < 8.1846] w=0.0506 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)N232.CB) [> 2.6781 = 4.4634 < 5.8025] w=0.0506 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)N232.CB) [> 4.1299 = 6.8832 < 8.9482] w=0.0506 to align # Constraint # added constraint: constraint((T0298)S39.CB, (T0298)A74.CB) [> 4.4460 = 7.4100 < 9.6330] w=0.0500 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)T155.CB) [> 4.2515 = 7.0859 < 9.2116] w=0.0500 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)L154.CB) [> 4.4910 = 7.4850 < 9.7304] w=0.0500 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)N153.CB) [> 4.3533 = 7.2555 < 9.4322] w=0.0500 to align # Constraint # added constraint: constraint((T0298)P280.CB, (T0298)A299.CB) [> 3.5785 = 5.9642 < 7.7535] w=0.0488 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)C235.CB) [> 4.1086 = 6.8477 < 8.9020] w=0.0481 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)V294.CB) [> 3.4921 = 5.8202 < 7.5662] w=0.0481 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)L231.CB) [> 3.4409 = 5.7348 < 7.4552] w=0.0418 to align # Constraint # added constraint: constraint((T0298)A40.CB, (T0298)V78.CB) [> 4.2262 = 7.0436 < 9.1567] w=0.0412 to align # Constraint # added constraint: constraint((T0298)P4.CB, (T0298)I332.CB) [> 4.6294 = 7.7157 < 10.0304] w=0.0405 to align # Constraint # added constraint: constraint((T0298)L163.CB, (T0298)C235.CB) [> 3.0534 = 5.0890 < 6.6157] w=0.0392 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)Y293.CB) [> 4.2414 = 7.0690 < 9.1896] w=0.0392 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)R296.CB) [> 4.0691 = 6.7819 < 8.8165] w=0.0392 to align # Constraint # added constraint: constraint((T0298)G167.CA, (T0298)L246.CB) [> 4.3888 = 7.3147 < 9.5092] w=0.0392 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)A156.CB) [> 4.1473 = 6.9121 < 8.9858] w=0.0379 to align # Constraint # added constraint: constraint((T0298)M1.CB, (T0298)H32.CB) [> 3.8036 = 6.3394 < 8.2412] w=0.0379 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)T234.CB) [> 3.6269 = 6.0448 < 7.8582] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V204.CB, (T0298)T234.CB) [> 3.9588 = 6.5979 < 8.5773] w=0.0379 to align # Constraint # added constraint: constraint((T0298)A181.CB, (T0298)F241.CB) [> 4.7055 = 7.8425 < 10.1953] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)L34.CB) [> 4.6809 = 7.8014 < 10.1418] w=0.0379 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)D314.CB) [> 3.3779 = 5.6298 < 7.3188] w=0.0379 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)Y293.CB) [> 3.9620 = 6.6034 < 8.5844] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)N196.CB) [> 4.1853 = 6.9754 < 9.0681] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)L34.CB) [> 3.7463 = 6.2438 < 8.1170] w=0.0379 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)R165.CB) [> 3.9612 = 6.6020 < 8.5826] w=0.0379 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)L231.CB) [> 4.3427 = 7.2378 < 9.4091] w=0.0379 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)S245.CB) [> 4.7323 = 7.8872 < 10.2534] w=0.0379 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)L231.CB) [> 4.7121 = 7.8535 < 10.2096] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)P230.CB) [> 4.2797 = 7.1329 < 9.2727] w=0.0379 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)G229.CA) [> 3.9575 = 6.5958 < 8.5746] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)V93.CB) [> 4.6986 = 7.8310 < 10.1803] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V10.CB, (T0298)D95.CB) [> 4.6862 = 7.8103 < 10.1535] w=0.0379 to align # Constraint # added constraint: constraint((T0298)A74.CB, (T0298)D95.CB) [> 4.4208 = 7.3679 < 9.5783] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)R191.CB) [> 4.7063 = 7.8439 < 10.1970] w=0.0379 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)C130.CB) [> 3.2722 = 5.4536 < 7.0897] w=0.0379 to align # Constraint # added constraint: constraint((T0298)A76.CB, (T0298)L96.CB) [> 4.3318 = 7.2197 < 9.3856] w=0.0379 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)P129.CB) [> 3.7117 = 6.1862 < 8.0420] w=0.0379 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)A238.CB) [> 4.7455 = 7.9092 < 10.2819] w=0.0379 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)I193.CB) [> 4.7622 = 7.9371 < 10.3182] w=0.0379 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)Q151.CB) [> 2.5083 = 4.1806 < 5.4347] w=0.0379 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)T155.CB) [> 3.1098 = 5.1831 < 6.7380] w=0.0379 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)N153.CB) [> 4.5548 = 7.5913 < 9.8686] w=0.0379 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)N153.CB) [> 2.7157 = 4.5262 < 5.8841] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)N153.CB) [> 4.3061 = 7.1768 < 9.3299] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)L154.CB) [> 2.9961 = 4.9935 < 6.4916] w=0.0379 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)T155.CB) [> 4.2230 = 7.0384 < 9.1499] w=0.0379 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)T234.CB) [> 4.2046 = 7.0077 < 9.1100] w=0.0379 to align # Constraint # added constraint: constraint((T0298)I228.CB, (T0298)Q251.CB) [> 3.2220 = 5.3700 < 6.9810] w=0.0379 to align # Constraint # added constraint: constraint((T0298)T234.CB, (T0298)S245.CB) [> 3.1430 = 5.2384 < 6.8099] w=0.0379 to align # Constraint # added constraint: constraint((T0298)T234.CB, (T0298)L246.CB) [> 4.0230 = 6.7051 < 8.7166] w=0.0379 to align # Constraint # added constraint: constraint((T0298)C235.CB, (T0298)S245.CB) [> 4.1082 = 6.8469 < 8.9010] w=0.0379 to align # Constraint # added constraint: constraint((T0298)C235.CB, (T0298)L246.CB) [> 4.1516 = 6.9193 < 8.9951] w=0.0379 to align # Constraint # added constraint: constraint((T0298)I228.CB, (T0298)A286.CB) [> 4.3019 = 7.1699 < 9.3208] w=0.0374 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)A74.CB) [> 4.7229 = 7.8715 < 10.2329] w=0.0362 to align # Constraint # added constraint: constraint((T0298)V283.CB, (T0298)V297.CB) [> 4.5457 = 7.5761 < 9.8490] w=0.0362 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)G295.CA) [> 3.3307 = 5.5512 < 7.2165] w=0.0362 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)R296.CB) [> 4.0785 = 6.7974 < 8.8367] w=0.0362 to align # Constraint # added constraint: constraint((T0298)D285.CB, (T0298)G295.CA) [> 4.3068 = 7.1780 < 9.3314] w=0.0362 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)R296.CB) [> 3.9226 = 6.5376 < 8.4989] w=0.0342 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)A299.CB) [> 4.1552 = 6.9253 < 9.0029] w=0.0342 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)L246.CB) [> 4.3318 = 7.2197 < 9.3856] w=0.0316 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)A199.CB) [> 3.8576 = 6.4294 < 8.3582] w=0.0304 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)L246.CB) [> 4.1081 = 6.8468 < 8.9009] w=0.0304 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)F242.CB) [> 4.1183 = 6.8638 < 8.9229] w=0.0291 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)L231.CB) [> 3.7932 = 6.3221 < 8.2187] w=0.0291 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)L231.CB) [> 3.5503 = 5.9172 < 7.6924] w=0.0291 to align # Constraint # added constraint: constraint((T0298)Q3.CB, (T0298)P30.CB) [> 3.5780 = 5.9633 < 7.7522] w=0.0291 to align # Constraint # added constraint: constraint((T0298)Q3.CB, (T0298)R33.CB) [> 2.9102 = 4.8503 < 6.3054] w=0.0278 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)N308.CB) [> 4.2589 = 7.0981 < 9.2276] w=0.0266 to align # Constraint # added constraint: constraint((T0298)V297.CB, (T0298)Q306.CB) [> 3.9494 = 6.5823 < 8.5571] w=0.0266 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)Q306.CB) [> 4.3000 = 7.1666 < 9.3166] w=0.0266 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)N308.CB) [> 3.4094 = 5.6823 < 7.3870] w=0.0266 to align # Constraint # added constraint: constraint((T0298)V294.CB, (T0298)N308.CB) [> 4.0517 = 6.7529 < 8.7787] w=0.0266 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)Y293.CB) [> 4.4411 = 7.4018 < 9.6224] w=0.0266 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)F242.CB) [> 4.4634 = 7.4391 < 9.6708] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)I193.CB) [> 3.8770 = 6.4616 < 8.4001] w=0.0253 to align # Constraint # added constraint: constraint((T0298)D190.CB, (T0298)V201.CB) [> 4.6463 = 7.7438 < 10.0670] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L5.CB, (T0298)H334.CB) [> 4.5357 = 7.5596 < 9.8275] w=0.0253 to align # Constraint # added constraint: constraint((T0298)M1.CB, (T0298)R33.CB) [> 2.6948 = 4.4913 < 5.8387] w=0.0253 to align # Constraint # added constraint: constraint((T0298)G202.CA, (T0298)A238.CB) [> 4.5266 = 7.5443 < 9.8076] w=0.0253 to align # Constraint # added constraint: constraint((T0298)R191.CB, (T0298)C235.CB) [> 3.0622 = 5.1036 < 6.6347] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L184.CB, (T0298)A194.CB) [> 4.6713 = 7.7855 < 10.1211] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L179.CB, (T0298)A194.CB) [> 4.7450 = 7.9084 < 10.2809] w=0.0253 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)V283.CB) [> 4.6984 = 7.8306 < 10.1798] w=0.0253 to align # Constraint # added constraint: constraint((T0298)D285.CB, (T0298)D314.CB) [> 4.4007 = 7.3345 < 9.5348] w=0.0253 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)S313.CB) [> 4.5973 = 7.6622 < 9.9609] w=0.0253 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)S313.CB) [> 4.7650 = 7.9417 < 10.3242] w=0.0253 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)L125.CB) [> 4.4249 = 7.3749 < 9.5874] w=0.0253 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)S111.CB) [> 3.9721 = 6.6201 < 8.6062] w=0.0253 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)T292.CB) [> 4.6778 = 7.7963 < 10.1352] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)V294.CB) [> 3.6248 = 6.0413 < 7.8537] w=0.0253 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)W310.CB) [> 3.9850 = 6.6416 < 8.6341] w=0.0253 to align # Constraint # added constraint: constraint((T0298)T292.CB, (T0298)W310.CB) [> 4.4803 = 7.4671 < 9.7073] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L163.CB, (T0298)A194.CB) [> 3.5029 = 5.8382 < 7.5897] w=0.0253 to align # Constraint # added constraint: constraint((T0298)P102.CB, (T0298)A156.CB) [> 3.5608 = 5.9347 < 7.7151] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S66.CB, (T0298)G90.CA) [> 4.2114 = 7.0190 < 9.1247] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)S245.CB) [> 3.7543 = 6.2571 < 8.1342] w=0.0253 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)S128.CB) [> 2.6806 = 4.4678 < 5.8081] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)S128.CB) [> 3.9326 = 6.5544 < 8.5207] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)S127.CB) [> 3.3556 = 5.5926 < 7.2704] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)L125.CB) [> 3.9188 = 6.5314 < 8.4908] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)S128.CB) [> 3.7528 = 6.2546 < 8.1310] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)S127.CB) [> 4.7838 = 7.9729 < 10.3648] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F71.CB, (T0298)L125.CB) [> 4.7200 = 7.8666 < 10.2266] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)T234.CB) [> 4.3908 = 7.3180 < 9.5134] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)N232.CB) [> 2.9577 = 4.9295 < 6.4084] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)N232.CB) [> 4.0860 = 6.8100 < 8.8530] w=0.0253 to align # Constraint # added constraint: constraint((T0298)Q237.CB, (T0298)L246.CB) [> 3.6815 = 6.1358 < 7.9765] w=0.0253 to align # Constraint # added constraint: constraint((T0298)N232.CB, (T0298)T249.CB) [> 3.3182 = 5.5304 < 7.1895] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L231.CB, (T0298)T249.CB) [> 4.5133 = 7.5222 < 9.7789] w=0.0253 to align # Constraint # added constraint: constraint((T0298)G229.CA, (T0298)C252.CB) [> 3.4882 = 5.8137 < 7.5578] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L125.CB, (T0298)T155.CB) [> 4.4824 = 7.4706 < 9.7118] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L125.CB, (T0298)L154.CB) [> 2.9945 = 4.9909 < 6.4882] w=0.0253 to align # Constraint # added constraint: constraint((T0298)L125.CB, (T0298)N153.CB) [> 4.1227 = 6.8711 < 8.9324] w=0.0253 to align # Constraint # added constraint: constraint((T0298)F124.CB, (T0298)T155.CB) [> 4.4485 = 7.4141 < 9.6383] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)L154.CB) [> 4.3550 = 7.2583 < 9.4358] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)T155.CB) [> 4.1767 = 6.9612 < 9.0495] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)A156.CB) [> 2.4328 = 4.0547 < 5.2711] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)C157.CB) [> 4.5239 = 7.5398 < 9.8018] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)A156.CB) [> 4.2302 = 7.0503 < 9.1654] w=0.0253 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)C157.CB) [> 3.3217 = 5.5361 < 7.1970] w=0.0253 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)R296.CB) [> 3.8431 = 6.4052 < 8.3267] w=0.0247 to align # Constraint # added constraint: constraint((T0298)T146.CB, (T0298)A286.CB) [> 4.6487 = 7.7479 < 10.0722] w=0.0241 to align # Constraint # added constraint: constraint((T0298)G284.CA, (T0298)V294.CB) [> 3.8039 = 6.3399 < 8.2419] w=0.0241 to align # Constraint # added constraint: constraint((T0298)V283.CB, (T0298)R296.CB) [> 2.7729 = 4.6215 < 6.0080] w=0.0241 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)V297.CB) [> 3.5627 = 5.9379 < 7.7193] w=0.0241 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)D285.CB) [> 4.3712 = 7.2854 < 9.4710] w=0.0241 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)D285.CB) [> 4.1516 = 6.9193 < 8.9951] w=0.0241 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)S161.CB) [> 4.6311 = 7.7185 < 10.0340] w=0.0197 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)R296.CB) [> 3.8908 = 6.4847 < 8.4302] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)V294.CB) [> 4.3662 = 7.2770 < 9.4601] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)G295.CA) [> 3.6033 = 6.0055 < 7.8071] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)R296.CB) [> 3.2290 = 5.3817 < 6.9963] w=0.0177 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)V294.CB) [> 4.1718 = 6.9530 < 9.0389] w=0.0177 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)G295.CA) [> 3.5889 = 5.9815 < 7.7759] w=0.0177 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)T292.CB) [> 3.8992 = 6.4987 < 8.4483] w=0.0177 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)Y293.CB) [> 3.8424 = 6.4040 < 8.3253] w=0.0177 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)V294.CB) [> 3.1754 = 5.2923 < 6.8800] w=0.0177 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)A199.CB) [> 4.0661 = 6.7768 < 8.8099] w=0.0177 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)R165.CB) [> 2.8627 = 4.7711 < 6.2025] w=0.0177 to align # Constraint # added constraint: constraint((T0298)V201.CB, (T0298)N232.CB) [> 4.2628 = 7.1047 < 9.2361] w=0.0177 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)V233.CB) [> 2.8353 = 4.7255 < 6.1431] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)V233.CB) [> 4.0427 = 6.7378 < 8.7591] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)N232.CB) [> 2.9247 = 4.8745 < 6.3369] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)V233.CB) [> 4.0360 = 6.7267 < 8.7448] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L188.CB, (T0298)L197.CB) [> 4.5900 = 7.6500 < 9.9450] w=0.0177 to align # Constraint # added constraint: constraint((T0298)R187.CB, (T0298)L197.CB) [> 3.8620 = 6.4367 < 8.3677] w=0.0177 to align # Constraint # added constraint: constraint((T0298)L184.CB, (T0298)N196.CB) [> 3.7028 = 6.1713 < 8.0226] w=0.0177 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)C235.CB) [> 4.6345 = 7.7242 < 10.0415] w=0.0177 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)L246.CB) [> 4.1527 = 6.9212 < 8.9976] w=0.0165 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)P230.CB) [> 2.8333 = 4.7221 < 6.1388] w=0.0165 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)P230.CB) [> 4.4991 = 7.4985 < 9.7481] w=0.0165 to align # Constraint # added constraint: constraint((T0298)L197.CB, (T0298)L231.CB) [> 3.1614 = 5.2689 < 6.8496] w=0.0165 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)M109.CB) [> 3.4886 = 5.8143 < 7.5586] w=0.0159 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)M109.CB) [> 3.5629 = 5.9382 < 7.7196] w=0.0159 to align # Constraint # added constraint: constraint((T0298)A74.CB, (T0298)M109.CB) [> 3.3616 = 5.6027 < 7.2835] w=0.0159 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)M109.CB) [> 3.5022 = 5.8370 < 7.5881] w=0.0159 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)L322.CB) [> 4.6710 = 7.7850 < 10.1206] w=0.0159 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)G295.CA) [> 4.1901 = 6.9834 < 9.0785] w=0.0139 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)T292.CB) [> 3.4211 = 5.7018 < 7.4124] w=0.0139 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)Y293.CB) [> 2.4843 = 4.1405 < 5.3826] w=0.0139 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)T292.CB) [> 2.7422 = 4.5703 < 5.9414] w=0.0139 to align # Constraint # added constraint: constraint((T0298)G295.CA, (T0298)Q306.CB) [> 4.2484 = 7.0807 < 9.2049] w=0.0139 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)S313.CB) [> 3.5652 = 5.9419 < 7.7245] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L158.CB, (T0298)S313.CB) [> 4.2849 = 7.1415 < 9.2839] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)L231.CB) [> 4.5393 = 7.5655 < 9.8351] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)L231.CB) [> 4.4368 = 7.3947 < 9.6131] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)N308.CB) [> 4.7844 = 7.9740 < 10.3662] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)L309.CB) [> 4.7071 = 7.8452 < 10.1988] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)N308.CB) [> 3.7020 = 6.1699 < 8.0209] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S245.CB, (T0298)Q306.CB) [> 4.6244 = 7.7074 < 10.0196] w=0.0126 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)L309.CB) [> 4.2567 = 7.0944 < 9.2228] w=0.0126 to align # Constraint # added constraint: constraint((T0298)G243.CA, (T0298)N308.CB) [> 3.9319 = 6.5532 < 8.5191] w=0.0126 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)W310.CB) [> 3.2394 = 5.3990 < 7.0188] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R182.CB, (T0298)F241.CB) [> 3.8453 = 6.4088 < 8.3314] w=0.0126 to align # Constraint # added constraint: constraint((T0298)G14.CA, (T0298)V316.CB) [> 3.6645 = 6.1075 < 7.9397] w=0.0126 to align # Constraint # added constraint: constraint((T0298)T13.CB, (T0298)A74.CB) [> 4.5826 = 7.6377 < 9.9289] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V9.CB, (T0298)L23.CB) [> 4.6633 = 7.7722 < 10.1039] w=0.0126 to align # Constraint # added constraint: constraint((T0298)M1.CB, (T0298)F29.CB) [> 4.2487 = 7.0811 < 9.2054] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R191.CB, (T0298)P239.CB) [> 3.6056 = 6.0094 < 7.8122] w=0.0126 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)M109.CB) [> 4.4820 = 7.4700 < 9.7110] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)A156.CB) [> 4.5787 = 7.6311 < 9.9204] w=0.0126 to align # Constraint # added constraint: constraint((T0298)E18.CB, (T0298)C305.CB) [> 3.3083 = 5.5138 < 7.1679] w=0.0126 to align # Constraint # added constraint: constraint((T0298)D25.CB, (T0298)C305.CB) [> 4.2859 = 7.1431 < 9.2860] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)A194.CB) [> 4.1293 = 6.8821 < 8.9468] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)I193.CB) [> 3.8216 = 6.3694 < 8.2802] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)F195.CB) [> 2.9356 = 4.8927 < 6.3605] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)A194.CB) [> 4.5131 = 7.5219 < 9.7785] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)C305.CB) [> 4.6817 = 7.8029 < 10.1437] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)F195.CB) [> 4.4398 = 7.3996 < 9.6195] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L152.CB, (T0298)F195.CB) [> 4.6877 = 7.8127 < 10.1566] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)F195.CB) [> 2.8473 = 4.7455 < 6.1691] w=0.0126 to align # Constraint # added constraint: constraint((T0298)M109.CB, (T0298)Y293.CB) [> 4.5802 = 7.6337 < 9.9239] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)Q200.CB) [> 2.7357 = 4.5595 < 5.9273] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P107.CB, (T0298)L197.CB) [> 4.7188 = 7.8646 < 10.2240] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)I193.CB) [> 3.7405 = 6.2342 < 8.1044] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)L197.CB) [> 4.0075 = 6.6792 < 8.6829] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)I193.CB) [> 4.7652 = 7.9420 < 10.3246] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)Q200.CB) [> 4.6029 = 7.6716 < 9.9730] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)L197.CB) [> 4.0554 = 6.7591 < 8.7868] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L246.CB, (T0298)V294.CB) [> 4.2473 = 7.0788 < 9.2024] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F242.CB, (T0298)A286.CB) [> 3.0264 = 5.0440 < 6.5571] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V240.CB, (T0298)G284.CA) [> 4.6720 = 7.7867 < 10.1227] w=0.0126 to align # Constraint # added constraint: constraint((T0298)Q200.CB, (T0298)I212.CB) [> 4.7593 = 7.9322 < 10.3119] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A199.CB, (T0298)L231.CB) [> 4.5486 = 7.5809 < 9.8552] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)Y293.CB) [> 4.7805 = 7.9675 < 10.3578] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L184.CB, (T0298)F195.CB) [> 2.6675 = 4.4458 < 5.7796] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)V233.CB) [> 4.7031 = 7.8384 < 10.1899] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)N232.CB) [> 3.7462 = 6.2437 < 8.1168] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F195.CB, (T0298)V233.CB) [> 2.0463 = 3.4106 < 4.4337] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F195.CB, (T0298)N232.CB) [> 3.0306 = 5.0510 < 6.5663] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F195.CB, (T0298)L231.CB) [> 2.3965 = 3.9942 < 5.1925] w=0.0126 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)V233.CB) [> 3.0692 = 5.1153 < 6.6499] w=0.0126 to align # Constraint # added constraint: constraint((T0298)G288.CA, (T0298)Q306.CB) [> 4.5993 = 7.6656 < 9.9653] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A286.CB, (T0298)N308.CB) [> 4.5865 = 7.6441 < 9.9374] w=0.0126 to align # Constraint # added constraint: constraint((T0298)D285.CB, (T0298)W310.CB) [> 4.5840 = 7.6400 < 9.9320] w=0.0126 to align # Constraint # added constraint: constraint((T0298)D285.CB, (T0298)N308.CB) [> 2.4450 = 4.0749 < 5.2974] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V282.CB, (T0298)I311.CB) [> 3.0821 = 5.1368 < 6.6778] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V7.CB, (T0298)L37.CB) [> 4.1616 = 6.9360 < 9.0168] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N6.CB, (T0298)L37.CB) [> 3.4488 = 5.7481 < 7.4725] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C137.CB, (T0298)G225.CA) [> 4.3118 = 7.1863 < 9.3422] w=0.0126 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)L322.CB) [> 3.4098 = 5.6830 < 7.3879] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R296.CB, (T0298)S313.CB) [> 4.6015 = 7.6692 < 9.9700] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R182.CB, (T0298)P239.CB) [> 3.3754 = 5.6257 < 7.3134] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R182.CB, (T0298)A238.CB) [> 4.7461 = 7.9102 < 10.2833] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)A199.CB) [> 2.2261 = 3.7102 < 4.8233] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)V294.CB) [> 4.6689 = 7.7814 < 10.1159] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)G295.CA) [> 4.6289 = 7.7148 < 10.0293] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)N196.CB) [> 4.0345 = 6.7241 < 8.7414] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)L198.CB) [> 2.8506 = 4.7510 < 6.1763] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S159.CB, (T0298)T292.CB) [> 3.8482 = 6.4136 < 8.3377] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)F195.CB) [> 4.7740 = 7.9567 < 10.3438] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)N196.CB) [> 3.5451 = 5.9085 < 7.6811] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)N196.CB) [> 4.1394 = 6.8990 < 8.9687] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)Y293.CB) [> 4.6042 = 7.6737 < 9.9758] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)I311.CB) [> 3.4643 = 5.7739 < 7.5061] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)T292.CB) [> 4.5082 = 7.5136 < 9.7677] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)Y293.CB) [> 4.0443 = 6.7405 < 8.7626] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)G295.CA) [> 3.9527 = 6.5879 < 8.5643] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)W310.CB) [> 4.4277 = 7.3795 < 9.5933] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)I311.CB) [> 3.4363 = 5.7272 < 7.4454] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)V312.CB) [> 4.5990 = 7.6649 < 9.9644] w=0.0126 to align # Constraint # added constraint: constraint((T0298)Y293.CB, (T0298)L309.CB) [> 4.2519 = 7.0866 < 9.2126] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)S245.CB) [> 2.6387 = 4.3978 < 5.7171] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L198.CB, (T0298)L246.CB) [> 4.4649 = 7.4415 < 9.6739] w=0.0126 to align # Constraint # added constraint: constraint((T0298)I193.CB, (T0298)T249.CB) [> 4.1578 = 6.9297 < 9.0086] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N196.CB, (T0298)L246.CB) [> 4.5176 = 7.5294 < 9.7882] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S97.CB, (T0298)C157.CB) [> 4.4218 = 7.3697 < 9.5806] w=0.0126 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)T268.CB) [> 4.6835 = 7.8059 < 10.1477] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)I193.CB) [> 3.1364 = 5.2273 < 6.7955] w=0.0126 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)T234.CB) [> 4.3636 = 7.2727 < 9.4546] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)V233.CB) [> 4.0903 = 6.8172 < 8.8624] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)T234.CB) [> 4.0898 = 6.8163 < 8.8613] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)S159.CB) [> 4.6587 = 7.7645 < 10.0938] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)V160.CB) [> 2.7872 = 4.6454 < 6.0390] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)N232.CB) [> 4.0920 = 6.8201 < 8.8661] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)V233.CB) [> 3.3503 = 5.5839 < 7.2590] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)T234.CB) [> 1.9370 = 3.2283 < 4.1968] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)C235.CB) [> 4.7806 = 7.9676 < 10.3579] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)S245.CB) [> 2.0699 = 3.4499 < 4.4848] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)C157.CB) [> 3.4597 = 5.7662 < 7.4960] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)N232.CB) [> 3.2741 = 5.4568 < 7.0939] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)T234.CB) [> 3.3274 = 5.5456 < 7.2093] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)V233.CB) [> 2.9331 = 4.8885 < 6.3551] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S127.CB, (T0298)C235.CB) [> 3.0812 = 5.1354 < 6.6761] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)V233.CB) [> 3.7666 = 6.2777 < 8.1610] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)T234.CB) [> 1.9435 = 3.2392 < 4.2110] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)C235.CB) [> 4.5166 = 7.5277 < 9.7860] w=0.0126 to align # Constraint # added constraint: constraint((T0298)S128.CB, (T0298)G243.CA) [> 4.5937 = 7.6562 < 9.9531] w=0.0126 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)V160.CB) [> 4.4314 = 7.3857 < 9.6014] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)P129.CB) [> 3.6705 = 6.1175 < 7.9527] w=0.0126 to align # Constraint # added constraint: constraint((T0298)F72.CB, (T0298)V132.CB) [> 3.6808 = 6.1347 < 7.9752] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)P129.CB) [> 3.5481 = 5.9134 < 7.6875] w=0.0126 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)V132.CB) [> 3.7849 = 6.3082 < 8.2007] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)L231.CB) [> 3.2961 = 5.4935 < 7.1415] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)N232.CB) [> 3.2741 = 5.4568 < 7.0939] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)T234.CB) [> 4.2025 = 7.0042 < 9.1055] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V160.CB, (T0298)S245.CB) [> 3.6319 = 6.0532 < 7.8691] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)L231.CB) [> 3.2689 = 5.4481 < 7.0826] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)N232.CB) [> 3.2366 = 5.3944 < 7.0127] w=0.0126 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)V233.CB) [> 3.4751 = 5.7919 < 7.5295] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N232.CB, (T0298)S245.CB) [> 3.2829 = 5.4715 < 7.1129] w=0.0126 to align # Constraint # added constraint: constraint((T0298)N232.CB, (T0298)L246.CB) [> 4.0042 = 6.6736 < 8.6757] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V233.CB, (T0298)S245.CB) [> 4.0403 = 6.7339 < 8.7540] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V233.CB, (T0298)L246.CB) [> 4.4201 = 7.3668 < 9.5769] w=0.0126 to align # Constraint # added constraint: constraint((T0298)T234.CB, (T0298)G243.CA) [> 3.4179 = 5.6964 < 7.4054] w=0.0126 to align # Constraint # added constraint: constraint((T0298)V132.CB, (T0298)S245.CB) [> 4.6954 = 7.8257 < 10.1734] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)Q237.CB) [> 4.2794 = 7.1324 < 9.2721] w=0.0126 to align # Constraint # added constraint: constraint((T0298)C157.CB, (T0298)N232.CB) [> 4.0818 = 6.8029 < 8.8438] w=0.0126 to align # Constraint # added constraint: constraint((T0298)L125.CB, (T0298)H334.CB) [> 2.5069 = 4.1782 < 5.4317] w=0.0121 to align # Constraint # added constraint: constraint((T0298)H35.CB, (T0298)F72.CB) [> 4.6220 = 7.7034 < 10.0144] w=0.0121 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)A156.CB) [> 2.5127 = 4.1879 < 5.4442] w=0.0121 to align # Constraint # added constraint: constraint((T0298)D95.CB, (T0298)C157.CB) [> 4.5267 = 7.5444 < 9.8078] w=0.0121 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)L154.CB) [> 2.9095 = 4.8492 < 6.3039] w=0.0121 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)T155.CB) [> 4.5312 = 7.5520 < 9.8176] w=0.0121 to align # Constraint # added constraint: constraint((T0298)V93.CB, (T0298)A156.CB) [> 4.6594 = 7.7656 < 10.0953] w=0.0121 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)L154.CB) [> 4.4826 = 7.4710 < 9.7123] w=0.0121 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)T155.CB) [> 2.8218 = 4.7031 < 6.1140] w=0.0121 to align # Constraint # added constraint: constraint((T0298)I94.CB, (T0298)A156.CB) [> 4.5855 = 7.6425 < 9.9353] w=0.0121 to align # Constraint # added constraint: constraint((T0298)L231.CB, (T0298)D285.CB) [> 3.5092 = 5.8487 < 7.6033] w=0.0121 to align # Constraint # added constraint: constraint((T0298)A73.CB, (T0298)D95.CB) [> 4.7015 = 7.8358 < 10.1866] w=0.0115 to align # Constraint # added constraint: constraint((T0298)C130.CB, (T0298)R165.CB) [> 4.1391 = 6.8984 < 8.9679] w=0.0076 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)C235.CB) [> 4.6722 = 7.7871 < 10.1232] w=0.0076 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)Q237.CB) [> 4.1100 = 6.8501 < 8.9051] w=0.0076 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)Q237.CB) [> 3.3162 = 5.5270 < 7.1851] w=0.0076 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)T249.CB) [> 4.4632 = 7.4387 < 9.6704] w=0.0051 to align # Constraint # added constraint: constraint((T0298)L96.CB, (T0298)M109.CB) [> 3.5044 = 5.8406 < 7.5928] w=0.0038 to align # Constraint # added constraint: constraint((T0298)P129.CB, (T0298)R165.CB) [> 4.7616 = 7.9360 < 10.3169] w=0.0038 to align # Constraint # added constraint: constraint((T0298)N153.CB, (T0298)G295.CA) [> 3.8217 = 6.3695 < 8.2803] w=0.0038 to align # Constraint # added constraint: constraint((T0298)L154.CB, (T0298)Y293.CB) [> 4.2305 = 7.0508 < 9.1661] w=0.0038 to align # Constraint # added constraint: constraint((T0298)T155.CB, (T0298)Y293.CB) [> 4.2624 = 7.1040 < 9.2351] w=0.0038 to align # Constraint # added constraint: constraint((T0298)A156.CB, (T0298)F242.CB) [> 4.6127 = 7.6878 < 9.9942] w=0.0038 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)Y293.CB) [> 4.0366 = 6.7276 < 8.7458] w=0.0038 to align # Constraint # added constraint: constraint((T0298)S161.CB, (T0298)G295.CA) [> 4.6000 = 7.6667 < 9.9667] w=0.0038 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)T292.CB) [> 4.0142 = 6.6904 < 8.6975] w=0.0013 to align # Constraint # added constraint: constraint((T0298)R165.CB, (T0298)V294.CB) [> 4.3117 = 7.1862 < 9.3421] w=0.0013 to align # Constraint # added constraint: constraint((T0298)T249.CB, (T0298)T292.CB) [> 3.3659 = 5.6098 < 7.2927] w=0.0013 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0298/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0298/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0298)G202.C and (T0298)A203.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A206.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A206.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A206.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A206.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A206.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A206.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A206.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A206.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A206.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A206.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)G208.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)G208.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)G208.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)G208.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)G208.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)G208.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)G208.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)G208.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)G208.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)G208.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)G208.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)G208.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)G208.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)G208.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)G208.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)G208.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)G208.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.N only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.N only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.N only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.N only 0.000 apart, marking (T0298)H209.N as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.N only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.N only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.N only 0.000 apart, marking (T0298)H209.N as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.N only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.N only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.N only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.N only 0.000 apart, marking (T0298)S210.N as missing WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)H209.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.C and (T0298)A211.N only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)A211.N only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.N only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)A211.N only 0.000 apart, marking (T0298)S210.N as missing WARNING: atoms too close: (T0298)H209.C and (T0298)A211.N only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)A211.N only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)A211.N only 0.000 apart, marking (T0298)H209.N as missing WARNING: atoms too close: (T0298)G208.C and (T0298)A211.N only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)A211.N only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.N only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)A211.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)E207.C and (T0298)A211.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)A211.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)A211.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)A211.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A211.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A211.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A211.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A211.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A211.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A211.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A211.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A211.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A211.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A211.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A211.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A211.N only 0.000 apart, marking (T0298)A211.N as missing WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A211.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)S210.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)H209.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)G208.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A211.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)S210.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)H209.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.N only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.N only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.N only 0.000 apart, marking (T0298)A211.N as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.N only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.N only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.N only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.N only 0.000 apart, marking (T0298)S210.N as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.N only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.N only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.N only 0.000 apart, marking (T0298)H209.N as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.N only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.N only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.N only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.N only 0.000 apart, marking (T0298)I212.N as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A211.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A211.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A211.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)S210.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)H209.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.N only 0.000 apart, marking (T0298)I212.C as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.N only 0.000 apart, marking (T0298)I212.O as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CD1 as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG2 as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG1 as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CB as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CA as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.N only 0.000 apart, marking (T0298)I212.N as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.N only 0.000 apart, marking (T0298)A211.C as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.N only 0.000 apart, marking (T0298)A211.O as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CB as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CA as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.N only 0.000 apart, marking (T0298)A211.N as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.N only 0.000 apart, marking (T0298)S210.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.N only 0.000 apart, marking (T0298)S210.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.N only 0.000 apart, marking (T0298)S210.OG as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.N only 0.000 apart, marking (T0298)S210.N as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.N only 0.000 apart, marking (T0298)H209.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.N only 0.000 apart, marking (T0298)H209.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.NE2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CE1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.ND1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CD2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.N only 0.000 apart, marking (T0298)H209.N as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.N only 0.000 apart, marking (T0298)G208.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.N only 0.000 apart, marking (T0298)G208.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.N only 0.000 apart, marking (T0298)G208.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.N only 0.000 apart, marking (T0298)G208.N as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.N only 0.000 apart, marking (T0298)E207.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.N only 0.000 apart, marking (T0298)E207.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.N only 0.000 apart, marking (T0298)E207.N as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.N only 0.000 apart, marking (T0298)A206.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.N only 0.000 apart, marking (T0298)A206.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.N only 0.000 apart, marking (T0298)A206.N as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.N only 0.000 apart, marking (T0298)D205.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.N only 0.000 apart, marking (T0298)D205.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.N only 0.000 apart, marking (T0298)D205.N as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.N only 0.000 apart, marking (T0298)V204.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.N only 0.000 apart, marking (T0298)V204.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.N only 0.000 apart, marking (T0298)V204.N as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.N only 0.000 apart, marking (T0298)A203.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.N only 0.000 apart, marking (T0298)A203.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.N only 0.000 apart, marking (T0298)A203.N as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.N only 0.000 apart, marking (T0298)E213.N as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing WARNING: atoms too close: (T0298)E213.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E213.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)I212.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A211.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A211.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A211.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)S210.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)H209.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)G208.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)G208.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)G208.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)E207.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A206.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A206.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A206.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)D205.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)V204.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A203.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A203.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)A203.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing WARNING: atoms too close: (T0298)G202.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 330 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 325 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 329 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 333 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 331 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 332 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 333 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 332 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 333 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 333 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 309 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 334 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 553, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 554, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 556, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 333 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0298)L198.O and (T0298)A199.N only 0.000 apart, marking (T0298)A199.N as missing WARNING: atoms too close: (T0298)L327.O and (T0298)G328.N only 0.000 apart, marking (T0298)G328.N as missing # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0298)H32.O and (T0298)R33.N only 0.000 apart, marking (T0298)R33.N as missing WARNING: atoms too close: (T0298)D63.O and (T0298)F64.N only 0.000 apart, marking (T0298)F64.N as missing # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0298 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 335 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.0041 model score 0.0053 model score 0.0151 model score 0.0014 model score -0.0097 model score -0.0239 model score -0.0291 model score 0.0471 model score -0.0300 model score -0.0272 model score -0.0023 model score -0.0077 model score -0.0082 model score 0.1373 model score -0.0125 model score -0.2598 model score -0.0002 model score -0.1654 model score -0.0247 model score 0.0029 model score 1.9243 model score 1.8272 model score 1.8955 model score 2.0420 model score 1.9136 model score -0.3146 model score -0.1737 model score -0.1691 model score -0.2475 model score -0.2127 model score -0.2243 model score -0.2537 model score -0.2269 model score -0.2236 model score -0.2411 model score -0.2225 model score 0.8858 model score 0.0603 model score -0.0978 model score -0.1513 model score -0.0426 model score -0.1545 model score 1.2714 model score 1.2692 model score 1.2707 model score 1.2755 model score 1.2740 model score -0.2271 model score -0.1538 model score -0.2225 model score -0.1411 model score -0.1986 model score -0.0710 model score -0.2236 model score -0.2411 model score -0.2269 model score -0.2537 model score -0.2839 model score 1.0658 model score 0.4776 model score 1.7836 model score 1.4599 model score 1.2740 model score 1.2725 model score 1.2743 model score 1.2715 model score 1.2791 model score 1.2740 model score 1.2725 model score 1.2743 model score 1.2715 model score 1.2791 model score 2.5368 model score 2.4894 model score 2.4729 model score 2.4326 model score 2.4333 model score -0.2129 model score -0.0163 model score 0.5959 model score 0.8106 model score 0.3516 model score 1.2702 model score 1.2696 model score 1.2714 model score 1.2766 model score 1.2698 model score -0.1906 model score -0.1453 model score -0.1784 model score -0.1682 model score 0.0578 model score -0.0352 model score -0.2523 model score -0.2256 model score -0.2342 model score -0.2325 model score -0.2549 model score -0.2049 model score -0.3054 model score -0.3054 model score 1.3184 model score 1.6503 model score 1.6572 model score 1.3593 model score 1.3524 model score 0.0647 model score 0.0321 model score 0.1278 model score 0.5000 model score 0.4575 model score -0.2455 model score -0.1030 model score -0.1365 model score 0.0585 model score 1.6555 model score -0.2295 model score -0.1748 model score -0.2357 model score -0.2285 model score -0.1600 model score 1.2712 model score -0.1431 model score -0.0911 model score -0.1406 model score -0.1355 model score -0.0687 model score -0.2240 model score -0.1914 model score -0.2902 model score -0.0911 model score -0.0537 model score -0.2185 model score -0.2118 model score -0.2350 model score -0.2184 model score -0.2170 model score -0.1488 model score -0.2026 model score 0.0087 model score -0.1176 model score -0.1775 model score -0.2078 model score -0.2169 model score -0.2169 model score -0.2471 model score -0.2185 model score -0.2161 model score -0.2597 model score -0.2582 model score -0.1475 model score -0.2542 model score -0.2131 model score -0.2216 model score 0.3964 model score 0.6950 model score 1.6633 model score 0.3968 model score -0.2131 model score -0.2502 model score -0.2225 model score -0.2237 model score -0.1129 model score -0.3084 model score -0.2434 model score -0.3150 model score -0.3325 model score -0.2523 model score -0.0665 model score -0.2117 model score -0.2173 model score -0.1993 model score -0.1576 model score 1.2716 model score 1.2716 model score 1.2720 model score 1.2715 model score 1.2683 model score 1.2725 model score 1.2725 model score 1.2722 model score 1.2722 model score 1.2723 model score -0.2582 model score -0.2166 model score 0.0600 model score -0.2142 model score -0.3725 model score -0.2597 model score -0.0583 model score -0.1609 model score 0.0552 model score -0.1148 model score -0.2505 model score -0.0754 model score -0.0881 model score -0.0267 model score -0.0116 model score -0.2531 model score -0.0572 model score 0.0390 model score -0.1746 model score -0.1196 model score 1.2731 model score 1.2747 model score 1.2747 model score 1.2691 model score 1.2681 model score -0.2269 model score 1.2747 model score 1.2747 model score 1.2747 model score 1.2691 model score 1.2681 model score -0.2632 model score -0.2667 model score -0.2556 model score 0.0231 model score 0.1168 model score -0.3394 model score -0.1461 model score 1.2736 model score 1.2776 model score 1.2751 model score 1.2774 model score 1.2774 model score 1.2716 model score 1.2719 model score 1.2759 model score 1.2711 model score 1.2717 model score 0.5994 model score 0.6251 model score 0.5395 model score 0.5627 model score 1.1413 model score 2.3766 model score 2.5240 model score 2.4701 model score 2.4491 model score 0.1798 model score 0.1898 model score 0.2333 model score 1.0761 model score 1.4300 model score -0.2111 model score -0.1509 model score -0.1953 model score -0.2252 model score -0.1804 model score -0.1134 model score 0.0807 model score 0.1195 model score -0.2035 model score 0.1649 model score -0.0251 model score 0.0343 model score -0.3190 USE_META, weight: 0.8860 cost: -0.0041 min: -0.3725 max: 2.5368 USE_META, weight: 0.8831 cost: 0.0053 min: -0.3725 max: 2.5368 USE_META, weight: 0.8801 cost: 0.0151 min: -0.3725 max: 2.5368 USE_META, weight: 0.8843 cost: 0.0014 min: -0.3725 max: 2.5368 USE_META, weight: 0.8878 cost: -0.0097 min: -0.3725 max: 2.5368 USE_META, weight: 0.8921 cost: -0.0239 min: -0.3725 max: 2.5368 USE_META, weight: 0.8938 cost: -0.0291 min: -0.3725 max: 2.5368 USE_META, weight: 0.8702 cost: 0.0471 min: -0.3725 max: 2.5368 USE_META, weight: 0.8941 cost: -0.0300 min: -0.3725 max: 2.5368 USE_META, weight: 0.8932 cost: -0.0272 min: -0.3725 max: 2.5368 USE_META, weight: 0.8855 cost: -0.0023 min: -0.3725 max: 2.5368 USE_META, weight: 0.8872 cost: -0.0077 min: -0.3725 max: 2.5368 USE_META, weight: 0.8873 cost: -0.0082 min: -0.3725 max: 2.5368 USE_META, weight: 0.8423 cost: 0.1373 min: -0.3725 max: 2.5368 USE_META, weight: 0.8886 cost: -0.0125 min: -0.3725 max: 2.5368 USE_META, weight: 0.9651 cost: -0.2598 min: -0.3725 max: 2.5368 USE_META, weight: 0.8848 cost: -0.0002 min: -0.3725 max: 2.5368 USE_META, weight: 0.9359 cost: -0.1654 min: -0.3725 max: 2.5368 USE_META, weight: 0.8924 cost: -0.0247 min: -0.3725 max: 2.5368 USE_META, weight: 0.8839 cost: 0.0029 min: -0.3725 max: 2.5368 USE_META, weight: 0.2895 cost: 1.9243 min: -0.3725 max: 2.5368 USE_META, weight: 0.3195 cost: 1.8272 min: -0.3725 max: 2.5368 USE_META, weight: 0.2984 cost: 1.8955 min: -0.3725 max: 2.5368 USE_META, weight: 0.2531 cost: 2.0420 min: -0.3725 max: 2.5368 USE_META, weight: 0.2928 cost: 1.9136 min: -0.3725 max: 2.5368 USE_META, weight: 0.9821 cost: -0.3146 min: -0.3725 max: 2.5368 USE_META, weight: 0.9385 cost: -0.1737 min: -0.3725 max: 2.5368 USE_META, weight: 0.9371 cost: -0.1691 min: -0.3725 max: 2.5368 USE_META, weight: 0.9613 cost: -0.2475 min: -0.3725 max: 2.5368 USE_META, weight: 0.9506 cost: -0.2127 min: -0.3725 max: 2.5368 USE_META, weight: 0.9541 cost: -0.2243 min: -0.3725 max: 2.5368 USE_META, weight: 0.9632 cost: -0.2537 min: -0.3725 max: 2.5368 USE_META, weight: 0.9549 cost: -0.2269 min: -0.3725 max: 2.5368 USE_META, weight: 0.9539 cost: -0.2236 min: -0.3725 max: 2.5368 USE_META, weight: 0.9593 cost: -0.2411 min: -0.3725 max: 2.5368 USE_META, weight: 0.9536 cost: -0.2225 min: -0.3725 max: 2.5368 USE_META, weight: 0.6107 cost: 0.8858 min: -0.3725 max: 2.5368 USE_META, weight: 0.8661 cost: 0.0603 min: -0.3725 max: 2.5368 USE_META, weight: 0.9150 cost: -0.0978 min: -0.3725 max: 2.5368 USE_META, weight: 0.9316 cost: -0.1513 min: -0.3725 max: 2.5368 USE_META, weight: 0.8980 cost: -0.0426 min: -0.3725 max: 2.5368 USE_META, weight: 0.9326 cost: -0.1545 min: -0.3725 max: 2.5368 USE_META, weight: 0.4914 cost: 1.2714 min: -0.3725 max: 2.5368 USE_META, weight: 0.4921 cost: 1.2692 min: -0.3725 max: 2.5368 USE_META, weight: 0.4917 cost: 1.2707 min: -0.3725 max: 2.5368 USE_META, weight: 0.4902 cost: 1.2755 min: -0.3725 max: 2.5368 USE_META, weight: 0.4907 cost: 1.2740 min: -0.3725 max: 2.5368 USE_META, weight: 0.9550 cost: -0.2271 min: -0.3725 max: 2.5368 USE_META, weight: 0.9323 cost: -0.1538 min: -0.3725 max: 2.5368 USE_META, weight: 0.9536 cost: -0.2225 min: -0.3725 max: 2.5368 USE_META, weight: 0.9284 cost: -0.1411 min: -0.3725 max: 2.5368 USE_META, weight: 0.9462 cost: -0.1986 min: -0.3725 max: 2.5368 USE_META, weight: 0.9067 cost: -0.0710 min: -0.3725 max: 2.5368 USE_META, weight: 0.9539 cost: -0.2236 min: -0.3725 max: 2.5368 USE_META, weight: 0.9593 cost: -0.2411 min: -0.3725 max: 2.5368 USE_META, weight: 0.9549 cost: -0.2269 min: -0.3725 max: 2.5368 USE_META, weight: 0.9632 cost: -0.2537 min: -0.3725 max: 2.5368 USE_META, weight: 0.9726 cost: -0.2839 min: -0.3725 max: 2.5368 USE_META, weight: 0.5551 cost: 1.0658 min: -0.3725 max: 2.5368 USE_META, weight: 0.7370 cost: 0.4776 min: -0.3725 max: 2.5368 USE_META, weight: 0.3330 cost: 1.7836 min: -0.3725 max: 2.5368 USE_META, weight: 0.4331 cost: 1.4599 min: -0.3725 max: 2.5368 USE_META, weight: 0.4906 cost: 1.2740 min: -0.3725 max: 2.5368 USE_META, weight: 0.4911 cost: 1.2725 min: -0.3725 max: 2.5368 USE_META, weight: 0.4906 cost: 1.2743 min: -0.3725 max: 2.5368 USE_META, weight: 0.4914 cost: 1.2715 min: -0.3725 max: 2.5368 USE_META, weight: 0.4891 cost: 1.2791 min: -0.3725 max: 2.5368 USE_META, weight: 0.4906 cost: 1.2740 min: -0.3725 max: 2.5368 USE_META, weight: 0.4911 cost: 1.2725 min: -0.3725 max: 2.5368 USE_META, weight: 0.4906 cost: 1.2743 min: -0.3725 max: 2.5368 USE_META, weight: 0.4914 cost: 1.2715 min: -0.3725 max: 2.5368 USE_META, weight: 0.4891 cost: 1.2791 min: -0.3725 max: 2.5368 USE_META, weight: 0.1000 cost: 2.5368 min: -0.3725 max: 2.5368 USE_META, weight: 0.1147 cost: 2.4894 min: -0.3725 max: 2.5368 USE_META, weight: 0.1198 cost: 2.4729 min: -0.3725 max: 2.5368 USE_META, weight: 0.1322 cost: 2.4326 min: -0.3725 max: 2.5368 USE_META, weight: 0.1320 cost: 2.4333 min: -0.3725 max: 2.5368 USE_META, weight: 0.9506 cost: -0.2129 min: -0.3725 max: 2.5368 USE_META, weight: 0.8898 cost: -0.0163 min: -0.3725 max: 2.5368 USE_META, weight: 0.7004 cost: 0.5959 min: -0.3725 max: 2.5368 USE_META, weight: 0.6340 cost: 0.8106 min: -0.3725 max: 2.5368 USE_META, weight: 0.7760 cost: 0.3516 min: -0.3725 max: 2.5368 USE_META, weight: 0.4918 cost: 1.2702 min: -0.3725 max: 2.5368 USE_META, weight: 0.4920 cost: 1.2696 min: -0.3725 max: 2.5368 USE_META, weight: 0.4915 cost: 1.2714 min: -0.3725 max: 2.5368 USE_META, weight: 0.4898 cost: 1.2766 min: -0.3725 max: 2.5368 USE_META, weight: 0.4920 cost: 1.2698 min: -0.3725 max: 2.5368 USE_META, weight: 0.9437 cost: -0.1906 min: -0.3725 max: 2.5368 USE_META, weight: 0.9297 cost: -0.1453 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0.1169 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 0.3023 eval: 0.1169 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 0.1000 eval: 0.1508 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 0.1000 eval: 0.1508 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 0.1000 eval: 0.1508 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.1508 Number of contacts in models: 258 Number of contacts in alignments: 84 NUMB_ALIGNS: 84 Adding 15819 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -603.1782, CN propb: -603.1782 weights: 0.3025 constraints: 1622 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1622 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1622 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 14197 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 14197 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 15819 # command: