# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0297/ # command:# Making conformation for sequence T0297 numbered 1 through 211 Created new target T0297 from T0297.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0297/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0297//projects/compbio/experiments/protein-predict/casp7/T0297/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0297//projects/compbio/experiments/protein-predict/casp7/T0297/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0297/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0297/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)V170.CB) [> 3.7168 = 6.1947 < 8.0531] w=1.0000 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)K125.CB) [> 4.2135 = 7.0226 < 9.1293] w=0.9998 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)K125.CB) [> 2.8874 = 4.8123 < 6.2559] w=0.9976 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)L126.CB) [> 3.0702 = 5.1171 < 6.6522] w=0.9546 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)I124.CB) [> 3.2076 = 5.3460 < 6.9498] w=0.9546 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)V170.CB) [> 4.1210 = 6.8684 < 8.9289] w=0.9531 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)F169.CB) [> 3.4755 = 5.7925 < 7.5303] w=0.9531 to align # Constraint # added constraint: constraint((T0297)I124.CB, (T0297)V167.CB) [> 2.9729 = 4.9549 < 6.4414] w=0.9531 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)K125.CB) [> 4.3209 = 7.2015 < 9.3619] w=0.9523 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)K125.CB) [> 3.8941 = 6.4902 < 8.4373] w=0.9523 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)V115.CB) [> 3.3577 = 5.5961 < 7.2750] w=0.9323 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)I124.CB) [> 3.8440 = 6.4066 < 8.3286] w=0.9320 to align # Constraint # added constraint: constraint((T0297)I112.CB, (T0297)I124.CB) [> 3.5277 = 5.8795 < 7.6434] w=0.9300 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)L127.CB) [> 4.1068 = 6.8446 < 8.8980] w=0.9298 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)V172.CB) [> 3.3818 = 5.6362 < 7.3271] w=0.9057 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)I124.CB) [> 4.4023 = 7.3372 < 9.5384] w=0.8868 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)L127.CB) [> 2.6448 = 4.4079 < 5.7303] w=0.8855 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)V172.CB) [> 3.3658 = 5.6097 < 7.2925] w=0.8854 to align # Constraint # added constraint: constraint((T0297)V115.CB, (T0297)I124.CB) [> 3.5268 = 5.8780 < 7.6414] w=0.8848 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)P171.CB) [> 3.0897 = 5.1496 < 6.6944] w=0.8831 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)F87.CB) [> 3.0304 = 5.0506 < 6.5658] w=0.8649 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)T122.CB) [> 3.4404 = 5.7341 < 7.4543] w=0.8642 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)T122.CB) [> 3.8692 = 6.4487 < 8.3833] w=0.8642 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)F87.CB) [> 4.3063 = 7.1772 < 9.3304] w=0.8425 to align # Constraint # added constraint: constraint((T0297)Y157.CB, (T0297)F169.CB) [> 3.7013 = 6.1689 < 8.0195] w=0.8422 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)I57.CB) [> 3.1937 = 5.3228 < 6.9197] w=0.8422 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)Y157.CB) [> 3.5427 = 5.9045 < 7.6758] w=0.8404 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)E123.CB) [> 4.3792 = 7.2987 < 9.4883] w=0.8371 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)E123.CB) [> 2.7271 = 4.5452 < 5.9088] w=0.8371 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)E168.CB) [> 3.1441 = 5.2401 < 6.8122] w=0.8356 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)D84.CB) [> 3.9944 = 6.6573 < 8.6545] w=0.8203 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)I86.CB) [> 3.8076 = 6.3460 < 8.2498] w=0.8203 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)F87.CB) [> 4.2084 = 7.0140 < 9.1182] w=0.8203 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L88.CB) [> 3.0535 = 5.0891 < 6.6159] w=0.8202 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)I86.CB) [> 2.8368 = 4.7280 < 6.1463] w=0.8202 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)K85.CB) [> 2.8471 = 4.7451 < 6.1687] w=0.8197 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)V58.CB) [> 4.1666 = 6.9444 < 9.0277] w=0.8196 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)K85.CB) [> 4.4147 = 7.3579 < 9.5652] w=0.7977 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)I86.CB) [> 4.2859 = 7.1431 < 9.2861] w=0.7976 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)F87.CB) [> 3.8579 = 6.4298 < 8.3587] w=0.7976 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)N59.CB) [> 3.2735 = 5.4558 < 7.0926] w=0.7975 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)L127.CB) [> 3.8479 = 6.4131 < 8.3370] w=0.7942 to align # Constraint # added constraint: constraint((T0297)I112.CB, (T0297)V167.CB) [> 3.7253 = 6.2088 < 8.0715] w=0.7911 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)V167.CB) [> 3.7349 = 6.2248 < 8.0922] w=0.7907 to align # Constraint # added constraint: constraint((T0297)D84.CB, (T0297)E123.CB) [> 4.0859 = 6.8098 < 8.8527] w=0.7896 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)D84.CB) [> 3.1194 = 5.1990 < 6.7587] w=0.7751 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)I90.CB) [> 3.1561 = 5.2601 < 6.8382] w=0.7749 to align # Constraint # added constraint: constraint((T0297)E123.CB, (T0297)E168.CB) [> 3.9225 = 6.5374 < 8.4986] w=0.7748 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)I124.CB) [> 4.6810 = 7.8017 < 10.1422] w=0.7737 to align # Constraint # added constraint: constraint((T0297)I124.CB, (T0297)E168.CB) [> 4.1892 = 6.9820 < 9.0766] w=0.7724 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)I129.CB) [> 3.4624 = 5.7707 < 7.5019] w=0.7683 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)F173.CB) [> 3.3717 = 5.6195 < 7.3053] w=0.7681 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)V170.CB) [> 3.0554 = 5.0924 < 6.6201] w=0.7680 to align # Constraint # added constraint: constraint((T0297)L108.CB, (T0297)L126.CB) [> 4.0169 = 6.6948 < 8.7033] w=0.7674 to align # Constraint # added constraint: constraint((T0297)Q158.CB, (T0297)F169.CB) [> 3.2098 = 5.3497 < 6.9546] w=0.7527 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)L88.CB) [> 3.9444 = 6.5740 < 8.5462] w=0.7524 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)L89.CB) [> 3.0701 = 5.1168 < 6.6519] w=0.7524 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)V58.CB) [> 4.0068 = 6.6779 < 8.6813] w=0.7518 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)I57.CB) [> 3.9443 = 6.5739 < 8.5461] w=0.7518 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)V58.CB) [> 3.0621 = 5.1034 < 6.6344] w=0.7518 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)T56.CB) [> 4.0642 = 6.7737 < 8.8058] w=0.7518 to align # Constraint # added constraint: constraint((T0297)D84.CB, (T0297)T122.CB) [> 3.7343 = 6.2238 < 8.0910] w=0.7511 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)N154.CB) [> 3.0176 = 5.0294 < 6.5382] w=0.7503 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)V170.CB) [> 4.1092 = 6.8487 < 8.9033] w=0.7455 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)I62.CB) [> 3.6150 = 6.0250 < 7.8324] w=0.7452 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)R63.CB) [> 3.4234 = 5.7056 < 7.4173] w=0.7452 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)R60.CB) [> 3.6694 = 6.1157 < 7.9504] w=0.7298 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L89.CB) [> 4.3744 = 7.2906 < 9.4778] w=0.7297 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)R60.CB) [> 3.2718 = 5.4529 < 7.0888] w=0.7292 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)T56.CB) [> 2.8372 = 4.7287 < 6.1474] w=0.7292 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)A104.CB) [> 3.7922 = 6.3203 < 8.2164] w=0.7254 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)L126.CB) [> 4.6323 = 7.7205 < 10.0367] w=0.7249 to align # Constraint # added constraint: constraint((T0297)I112.CB, (T0297)Y164.CB) [> 3.2771 = 5.4619 < 7.1004] w=0.7230 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)Y157.CB) [> 3.3797 = 5.6328 < 7.3226] w=0.7229 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)N107.CB) [> 2.5830 = 4.3049 < 5.5964] w=0.7226 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)K55.CB) [> 3.9675 = 6.6125 < 8.5963] w=0.7066 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)A104.CB) [> 3.4055 = 5.6758 < 7.3786] w=0.7007 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)F169.CB) [> 4.1239 = 6.8731 < 8.9350] w=0.7006 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)E168.CB) [> 4.3255 = 7.2092 < 9.3719] w=0.7006 to align # Constraint # added constraint: constraint((T0297)V172.CB, (T0297)L202.CB) [> 3.7916 = 6.3193 < 8.2151] w=0.7005 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)A161.CB) [> 3.2885 = 5.4809 < 7.1252] w=0.7003 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)I129.CB) [> 3.1451 = 5.2419 < 6.8144] w=0.7003 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)V167.CB) [> 4.2007 = 7.0011 < 9.1015] w=0.7000 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)I86.CB) [> 4.5609 = 7.6016 < 9.8820] w=0.6846 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)R60.CB) [> 3.8820 = 6.4700 < 8.4110] w=0.6841 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)I111.CB) [> 3.5543 = 5.9239 < 7.7011] w=0.6837 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)G61.CA) [> 2.9269 = 4.8783 < 6.3417] w=0.6826 to align # Constraint # added constraint: constraint((T0297)V83.CB, (T0297)T122.CB) [> 3.6323 = 6.0539 < 7.8700] w=0.6812 to align # Constraint # added constraint: constraint((T0297)L105.CB, (T0297)A156.CB) [> 2.9655 = 4.9425 < 6.4252] w=0.6803 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)D94.CB) [> 3.2711 = 5.4519 < 7.0874] w=0.6783 to align # Constraint # added constraint: constraint((T0297)Q66.CB, (T0297)N93.CB) [> 2.8228 = 4.7046 < 6.1160] w=0.6783 to align # Constraint # added constraint: constraint((T0297)Y65.CB, (T0297)N93.CB) [> 3.7892 = 6.3154 < 8.2100] w=0.6783 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)N154.CB) [> 3.6671 = 6.1119 < 7.9455] w=0.6782 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)G61.CA) [> 3.8035 = 6.3391 < 8.2408] w=0.6782 to align # Constraint # added constraint: constraint((T0297)E109.CB, (T0297)L160.CB) [> 3.5958 = 5.9929 < 7.7908] w=0.6779 to align # Constraint # added constraint: constraint((T0297)L108.CB, (T0297)L160.CB) [> 3.3417 = 5.5695 < 7.2404] w=0.6779 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)I111.CB) [> 4.0570 = 6.7617 < 8.7902] w=0.6774 to align # Constraint # added constraint: constraint((T0297)E123.CB, (T0297)V167.CB) [> 4.3329 = 7.2215 < 9.3880] w=0.6621 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)K55.CB) [> 3.3369 = 5.5615 < 7.2299] w=0.6614 to align # Constraint # added constraint: constraint((T0297)L108.CB, (T0297)Y157.CB) [> 3.7718 = 6.2863 < 8.1722] w=0.6578 to align # Constraint # added constraint: constraint((T0297)A104.CB, (T0297)W153.CB) [> 3.4405 = 5.7341 < 7.4543] w=0.6578 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)L126.CB) [> 4.3274 = 7.2123 < 9.3760] w=0.6576 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)L108.CB) [> 3.6729 = 6.1215 < 7.9580] w=0.6557 to align # Constraint # added constraint: constraint((T0297)Q66.CB, (T0297)D94.CB) [> 3.0499 = 5.0832 < 6.6081] w=0.6557 to align # Constraint # added constraint: constraint((T0297)Q66.CB, (T0297)G91.CA) [> 4.2676 = 7.1127 < 9.2465] w=0.6557 to align # Constraint # added constraint: constraint((T0297)G64.CA, (T0297)N93.CB) [> 3.0181 = 5.0302 < 6.5393] w=0.6557 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L70.CB) [> 3.7351 = 6.2251 < 8.0927] w=0.6557 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)G61.CA) [> 2.6535 = 4.4226 < 5.7494] w=0.6556 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)I62.CB) [> 4.1841 = 6.9735 < 9.0656] w=0.6555 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)L89.CB) [> 4.2935 = 7.1558 < 9.3026] w=0.6393 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)F169.CB) [> 4.2453 = 7.0754 < 9.1980] w=0.6388 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)G61.CA) [> 3.6336 = 6.0560 < 7.8729] w=0.6376 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)P171.CB) [> 4.3072 = 7.1786 < 9.3322] w=0.6347 to align # Constraint # added constraint: constraint((T0297)Q66.CB, (T0297)I90.CB) [> 4.3004 = 7.1674 < 9.3176] w=0.6331 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)Y65.CB) [> 3.8337 = 6.3895 < 8.3063] w=0.6328 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)G91.CA) [> 4.2088 = 7.0146 < 9.1190] w=0.6326 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)G61.CA) [> 2.8976 = 4.8293 < 6.2782] w=0.6322 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)R63.CB) [> 2.4542 = 4.0904 < 5.3175] w=0.6173 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)I90.CB) [> 4.2470 = 7.0784 < 9.2019] w=0.6170 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)V83.CB) [> 3.2572 = 5.4287 < 7.0573] w=0.6167 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)V83.CB) [> 3.1018 = 5.1697 < 6.7205] w=0.6167 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)L89.CB) [> 3.7372 = 6.2287 < 8.0973] w=0.6127 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)G64.CA) [> 3.4533 = 5.7554 < 7.4821] w=0.6127 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)F173.CB) [> 3.6802 = 6.1337 < 7.9738] w=0.6124 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)L108.CB) [> 3.8447 = 6.4078 < 8.3301] w=0.6114 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)H193.CB) [> 3.6915 = 6.1525 < 7.9983] w=0.6105 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)T92.CB) [> 3.8749 = 6.4582 < 8.3957] w=0.6105 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)H193.CB) [> 4.2440 = 7.0733 < 9.1953] w=0.6105 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)L89.CB) [> 3.1391 = 5.2318 < 6.8014] w=0.6105 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)W153.CB) [> 3.5619 = 5.9365 < 7.7175] w=0.6105 to align # Constraint # added constraint: constraint((T0297)D94.CB, (T0297)A104.CB) [> 2.9242 = 4.8738 < 6.3359] w=0.6105 to align # Constraint # added constraint: constraint((T0297)R60.CB, (T0297)N73.CB) [> 3.9130 = 6.5217 < 8.4782] w=0.6104 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)I90.CB) [> 3.4717 = 5.7862 < 7.5221] w=0.6101 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)I112.CB) [> 4.2757 = 7.1262 < 9.2640] w=0.6092 to align # Constraint # added constraint: constraint((T0297)V170.CB, (T0297)L206.CB) [> 3.7955 = 6.3258 < 8.2235] w=0.5924 to align # Constraint # added constraint: constraint((T0297)N154.CB, (T0297)P171.CB) [> 3.9219 = 6.5365 < 8.4974] w=0.5900 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)H77.CB) [> 3.9194 = 6.5324 < 8.4921] w=0.5899 to align # Constraint # added constraint: constraint((T0297)L78.CB, (T0297)V115.CB) [> 4.0285 = 6.7141 < 8.7283] w=0.5898 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)N59.CB) [> 3.9824 = 6.6374 < 8.6286] w=0.5879 to align # Constraint # added constraint: constraint((T0297)L105.CB, (T0297)L160.CB) [> 3.6785 = 6.1308 < 7.9700] w=0.5877 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L74.CB) [> 3.9926 = 6.6543 < 8.6506] w=0.5874 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)F169.CB) [> 4.5033 = 7.5054 < 9.7571] w=0.5874 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)T56.CB) [> 3.7274 = 6.2124 < 8.0761] w=0.5873 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)I129.CB) [> 4.2267 = 7.0445 < 9.1578] w=0.5871 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)R60.CB) [> 4.3947 = 7.3245 < 9.5219] w=0.5720 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)L89.CB) [> 4.3249 = 7.2081 < 9.3705] w=0.5716 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)A82.CB) [> 3.8853 = 6.4755 < 8.4181] w=0.5716 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)I57.CB) [> 4.3413 = 7.2355 < 9.4061] w=0.5711 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)G61.CA) [> 3.9603 = 6.6005 < 8.5806] w=0.5697 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)V172.CB) [> 3.4976 = 5.8294 < 7.5782] w=0.5675 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)V172.CB) [> 3.8758 = 6.4597 < 8.3976] w=0.5670 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)F173.CB) [> 3.6098 = 6.0164 < 7.8213] w=0.5667 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)W153.CB) [> 3.4624 = 5.7707 < 7.5019] w=0.5652 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)L206.CB) [> 4.1957 = 6.9928 < 9.0906] w=0.5652 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)N93.CB) [> 3.3434 = 5.5723 < 7.2440] w=0.5651 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)T92.CB) [> 3.4910 = 5.8183 < 7.5638] w=0.5651 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)G64.CA) [> 3.2559 = 5.4265 < 7.0545] w=0.5651 to align # Constraint # added constraint: constraint((T0297)I112.CB, (T0297)L126.CB) [> 4.2636 = 7.1060 < 9.2378] w=0.5644 to align # Constraint # added constraint: constraint((T0297)D75.CB, (T0297)S114.CB) [> 3.7760 = 6.2933 < 8.1813] w=0.5445 to align # Constraint # added constraint: constraint((T0297)L74.CB, (T0297)I111.CB) [> 3.6164 = 6.0273 < 7.8355] w=0.5444 to align # Constraint # added constraint: constraint((T0297)L78.CB, (T0297)D118.CB) [> 3.2549 = 5.4249 < 7.0524] w=0.5440 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)Y65.CB) [> 2.9552 = 4.9254 < 6.4030] w=0.5426 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)R63.CB) [> 3.9757 = 6.6262 < 8.6140] w=0.5426 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)I62.CB) [> 4.1103 = 6.8505 < 8.9057] w=0.5426 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)L194.CB) [> 3.9900 = 6.6501 < 8.6451] w=0.5426 to align # Constraint # added constraint: constraint((T0297)V101.CB, (T0297)A156.CB) [> 3.6797 = 6.1328 < 7.9726] w=0.5426 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)H77.CB) [> 4.2569 = 7.0948 < 9.2232] w=0.5426 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)L176.CB) [> 3.6408 = 6.0680 < 7.8885] w=0.5423 to align # Constraint # added constraint: constraint((T0297)V170.CB, (T0297)S205.CB) [> 3.4503 = 5.7505 < 7.4756] w=0.5422 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)L108.CB) [> 4.0419 = 6.7365 < 8.7574] w=0.5422 to align # Constraint # added constraint: constraint((T0297)R60.CB, (T0297)H77.CB) [> 3.3377 = 5.5629 < 7.2317] w=0.5222 to align # Constraint # added constraint: constraint((T0297)L74.CB, (T0297)V115.CB) [> 4.1946 = 6.9910 < 9.0882] w=0.5215 to align # Constraint # added constraint: constraint((T0297)V101.CB, (T0297)W153.CB) [> 3.4214 = 5.7023 < 7.4130] w=0.5200 to align # Constraint # added constraint: constraint((T0297)E186.CB, (T0297)S195.CB) [> 3.6203 = 6.0339 < 7.8440] w=0.5198 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)I57.CB) [> 4.4224 = 7.3707 < 9.5820] w=0.5196 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)L206.CB) [> 4.0015 = 6.6691 < 8.6699] w=0.5014 to align # Constraint # added constraint: constraint((T0297)L74.CB, (T0297)S114.CB) [> 3.4743 = 5.7905 < 7.5277] w=0.4989 to align # Constraint # added constraint: constraint((T0297)L70.CB, (T0297)I90.CB) [> 3.6412 = 6.0687 < 7.8893] w=0.4974 to align # Constraint # added constraint: constraint((T0297)V170.CB, (T0297)Y209.CB) [> 3.1573 = 5.2622 < 6.8409] w=0.4974 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)L194.CB) [> 4.2607 = 7.1012 < 9.2316] w=0.4974 to align # Constraint # added constraint: constraint((T0297)A104.CB, (T0297)A156.CB) [> 3.5412 = 5.9020 < 7.6726] w=0.4972 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)I129.CB) [> 4.0926 = 6.8211 < 8.8674] w=0.4969 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)L206.CB) [> 3.7488 = 6.2480 < 8.1223] w=0.4968 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)N59.CB) [> 4.0609 = 6.7682 < 8.7986] w=0.4748 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)Q66.CB) [> 4.5738 = 7.6229 < 9.9098] w=0.4748 to align # Constraint # added constraint: constraint((T0297)V172.CB, (T0297)S205.CB) [> 3.5022 = 5.8370 < 7.5881] w=0.4748 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)L70.CB) [> 3.6545 = 6.0908 < 7.9180] w=0.4748 to align # Constraint # added constraint: constraint((T0297)P46.CB, (T0297)H193.CB) [> 3.5134 = 5.8557 < 7.6124] w=0.4748 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)L130.CB) [> 4.1253 = 6.8755 < 8.9382] w=0.4747 to align # Constraint # added constraint: constraint((T0297)E109.CB, (T0297)Y164.CB) [> 3.7221 = 6.2035 < 8.0645] w=0.4744 to align # Constraint # added constraint: constraint((T0297)I124.CB, (T0297)Y164.CB) [> 4.1687 = 6.9479 < 9.0322] w=0.4740 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)K55.CB) [> 3.3808 = 5.6347 < 7.3251] w=0.4736 to align # Constraint # added constraint: constraint((T0297)A116.CB, (T0297)Y164.CB) [> 4.0860 = 6.8100 < 8.8530] w=0.4584 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)G81.CA) [> 3.7996 = 6.3327 < 8.2325] w=0.4564 to align # Constraint # added constraint: constraint((T0297)E186.CB, (T0297)G198.CA) [> 3.1398 = 5.2330 < 6.8029] w=0.4522 to align # Constraint # added constraint: constraint((T0297)P46.CB, (T0297)L194.CB) [> 3.9603 = 6.6005 < 8.5806] w=0.4522 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)F173.CB) [> 3.7383 = 6.2305 < 8.0996] w=0.4521 to align # Constraint # added constraint: constraint((T0297)L70.CB, (T0297)I111.CB) [> 3.6611 = 6.1018 < 7.9324] w=0.4519 to align # Constraint # added constraint: constraint((T0297)T122.CB, (T0297)Q166.CB) [> 4.2583 = 7.0972 < 9.2263] w=0.4516 to align # Constraint # added constraint: constraint((T0297)E168.CB, (T0297)Y209.CB) [> 3.6863 = 6.1438 < 7.9869] w=0.4516 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)D84.CB) [> 3.3845 = 5.6409 < 7.3332] w=0.4515 to align # Constraint # added constraint: constraint((T0297)E123.CB, (T0297)Q166.CB) [> 3.3499 = 5.5832 < 7.2581] w=0.4334 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)I150.CB) [> 4.0259 = 6.7099 < 8.7229] w=0.4317 to align # Constraint # added constraint: constraint((T0297)D94.CB, (T0297)W153.CB) [> 3.7399 = 6.2332 < 8.1032] w=0.4296 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)T92.CB) [> 4.4245 = 7.3742 < 9.5864] w=0.4295 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)S128.CB) [> 4.1258 = 6.8764 < 8.9393] w=0.4289 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)N107.CB) [> 4.3151 = 7.1919 < 9.3495] w=0.4133 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)I111.CB) [> 4.1967 = 6.9945 < 9.0928] w=0.4133 to align # Constraint # added constraint: constraint((T0297)V101.CB, (T0297)N152.CB) [> 2.8767 = 4.7945 < 6.2328] w=0.4092 to align # Constraint # added constraint: constraint((T0297)Y157.CB, (T0297)P171.CB) [> 4.4710 = 7.4517 < 9.6871] w=0.4087 to align # Constraint # added constraint: constraint((T0297)D94.CB, (T0297)E103.CB) [> 4.4405 = 7.4008 < 9.6210] w=0.4070 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)L202.CB) [> 4.1552 = 6.9253 < 9.0029] w=0.4070 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)I62.CB) [> 4.6661 = 7.7768 < 10.1099] w=0.4070 to align # Constraint # added constraint: constraint((T0297)L176.CB, (T0297)G198.CA) [> 4.4204 = 7.3674 < 9.5776] w=0.4070 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)Y157.CB) [> 4.5943 = 7.6572 < 9.9543] w=0.4070 to align # Constraint # added constraint: constraint((T0297)D94.CB, (T0297)N107.CB) [> 4.2576 = 7.0960 < 9.2249] w=0.4070 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)V115.CB) [> 4.4263 = 7.3771 < 9.5903] w=0.4066 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)Y209.CB) [> 3.5899 = 5.9832 < 7.7781] w=0.4065 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)F87.CB) [> 4.5587 = 7.5978 < 9.8771] w=0.4061 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)L210.CB) [> 4.4992 = 7.4987 < 9.7483] w=0.3843 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)Y157.CB) [> 4.1820 = 6.9700 < 9.0610] w=0.3843 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)L210.CB) [> 3.8375 = 6.3958 < 8.3146] w=0.3839 to align # Constraint # added constraint: constraint((T0297)D84.CB, (T0297)L121.CB) [> 4.2631 = 7.1051 < 9.2366] w=0.3835 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)L192.CB) [> 3.3328 = 5.5547 < 7.2211] w=0.3618 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)H193.CB) [> 2.4577 = 4.0962 < 5.3251] w=0.3618 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)L176.CB) [> 3.1639 = 5.2731 < 6.8551] w=0.3617 to align # Constraint # added constraint: constraint((T0297)E31.CB, (T0297)T56.CB) [> 4.0927 = 6.8212 < 8.8676] w=0.3615 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)K85.CB) [> 4.1336 = 6.8893 < 8.9562] w=0.3613 to align # Constraint # added constraint: constraint((T0297)A82.CB, (T0297)L121.CB) [> 4.1438 = 6.9063 < 8.9782] w=0.3609 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)L127.CB) [> 4.5977 = 7.6628 < 9.9617] w=0.3608 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)L88.CB) [> 4.5100 = 7.5167 < 9.7717] w=0.3458 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)I111.CB) [> 4.2779 = 7.1299 < 9.2688] w=0.3456 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)N147.CB) [> 3.6166 = 6.0276 < 7.8359] w=0.3436 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)S205.CB) [> 3.1976 = 5.3294 < 6.9282] w=0.3392 to align # Constraint # added constraint: constraint((T0297)L176.CB, (T0297)A201.CB) [> 4.2404 = 7.0673 < 9.1876] w=0.3392 to align # Constraint # added constraint: constraint((T0297)V172.CB, (T0297)L206.CB) [> 3.5843 = 5.9738 < 7.7659] w=0.3392 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)R63.CB) [> 3.8971 = 6.4951 < 8.4437] w=0.3392 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)Y199.CB) [> 3.8018 = 6.3363 < 8.2372] w=0.3392 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)L194.CB) [> 4.2859 = 7.1432 < 9.2862] w=0.3391 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)Y157.CB) [> 4.2747 = 7.1245 < 9.2618] w=0.3391 to align # Constraint # added constraint: constraint((T0297)A116.CB, (T0297)V167.CB) [> 4.1669 = 6.9448 < 9.0283] w=0.3390 to align # Constraint # added constraint: constraint((T0297)L105.CB, (T0297)Y157.CB) [> 3.9170 = 6.5284 < 8.4869] w=0.3390 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)L210.CB) [> 3.9987 = 6.6645 < 8.6638] w=0.3388 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)R60.CB) [> 4.2024 = 7.0040 < 9.1052] w=0.3383 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)L194.CB) [> 4.0111 = 6.6852 < 8.6907] w=0.3165 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)H193.CB) [> 3.6069 = 6.0114 < 7.8149] w=0.3165 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)L210.CB) [> 4.2846 = 7.1409 < 9.2832] w=0.3165 to align # Constraint # added constraint: constraint((T0297)P46.CB, (T0297)S195.CB) [> 3.7060 = 6.1767 < 8.0297] w=0.3165 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)G191.CA) [> 3.5006 = 5.8343 < 7.5845] w=0.3165 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)A104.CB) [> 3.8221 = 6.3701 < 8.2811] w=0.3162 to align # Constraint # added constraint: constraint((T0297)I86.CB, (T0297)Y119.CB) [> 3.8657 = 6.4428 < 8.3756] w=0.3162 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)L202.CB) [> 3.8668 = 6.4447 < 8.3781] w=0.3160 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)Y199.CB) [> 3.3241 = 5.5402 < 7.2022] w=0.2939 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)L192.CB) [> 4.5600 = 7.6001 < 9.8801] w=0.2939 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)G81.CA) [> 3.9797 = 6.6329 < 8.6227] w=0.2939 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)R63.CB) [> 4.4222 = 7.3703 < 9.5814] w=0.2936 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)N93.CB) [> 4.2343 = 7.0572 < 9.1744] w=0.2929 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)G61.CA) [> 4.4578 = 7.4297 < 9.6586] w=0.2758 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)N147.CB) [> 3.7812 = 6.3020 < 8.1926] w=0.2736 to align # Constraint # added constraint: constraint((T0297)R60.CB, (T0297)L74.CB) [> 4.3684 = 7.2806 < 9.4648] w=0.2734 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)L192.CB) [> 4.4877 = 7.4794 < 9.7233] w=0.2713 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)L202.CB) [> 4.4901 = 7.4835 < 9.7286] w=0.2713 to align # Constraint # added constraint: constraint((T0297)L176.CB, (T0297)L202.CB) [> 3.5052 = 5.8420 < 7.5946] w=0.2713 to align # Constraint # added constraint: constraint((T0297)L176.CB, (T0297)S205.CB) [> 3.3316 = 5.5526 < 7.2184] w=0.2713 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)L70.CB) [> 4.5150 = 7.5250 < 9.7824] w=0.2713 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)I90.CB) [> 4.5005 = 7.5008 < 9.7510] w=0.2713 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)L127.CB) [> 4.6212 = 7.7019 < 10.0125] w=0.2713 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)G191.CA) [> 3.5447 = 5.9078 < 7.6802] w=0.2713 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)I129.CB) [> 4.3372 = 7.2287 < 9.3973] w=0.2713 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)I129.CB) [> 4.0588 = 6.7647 < 8.7941] w=0.2713 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)N93.CB) [> 4.3927 = 7.3211 < 9.5175] w=0.2713 to align # Constraint # added constraint: constraint((T0297)Y187.CB, (T0297)G198.CA) [> 3.3611 = 5.6018 < 7.2823] w=0.2711 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)L183.CB) [> 4.3632 = 7.2720 < 9.4536] w=0.2711 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)S146.CB) [> 3.6058 = 6.0097 < 7.8126] w=0.2510 to align # Constraint # added constraint: constraint((T0297)V101.CB, (T0297)K149.CB) [> 3.6455 = 6.0759 < 7.8987] w=0.2510 to align # Constraint # added constraint: constraint((T0297)L50.CB, (T0297)S203.CB) [> 2.8296 = 4.7160 < 6.1308] w=0.2508 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)L183.CB) [> 4.0778 = 6.7963 < 8.8352] w=0.2487 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)T188.CB) [> 4.0362 = 6.7270 < 8.7451] w=0.2487 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)I57.CB) [> 3.2848 = 5.4747 < 7.1171] w=0.2486 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)L183.CB) [> 3.8500 = 6.4167 < 8.3417] w=0.2486 to align # Constraint # added constraint: constraint((T0297)T67.CB, (T0297)A110.CB) [> 4.3078 = 7.1797 < 9.3336] w=0.2483 to align # Constraint # added constraint: constraint((T0297)L74.CB, (T0297)I86.CB) [> 4.1789 = 6.9648 < 9.0542] w=0.2481 to align # Constraint # added constraint: constraint((T0297)L78.CB, (T0297)Y119.CB) [> 3.3291 = 5.5486 < 7.2132] w=0.2481 to align # Constraint # added constraint: constraint((T0297)L71.CB, (T0297)V115.CB) [> 4.2356 = 7.0594 < 9.1772] w=0.2480 to align # Constraint # added constraint: constraint((T0297)V170.CB, (T0297)L202.CB) [> 4.2994 = 7.1656 < 9.3153] w=0.2302 to align # Constraint # added constraint: constraint((T0297)L78.CB, (T0297)T122.CB) [> 3.8238 = 6.3730 < 8.2849] w=0.2277 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)K149.CB) [> 3.6147 = 6.0246 < 7.8319] w=0.2261 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)V132.CB) [> 3.7129 = 6.1883 < 8.0447] w=0.2261 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)I150.CB) [> 3.0805 = 5.1341 < 6.6744] w=0.2261 to align # Constraint # added constraint: constraint((T0297)P46.CB, (T0297)I196.CB) [> 2.8101 = 4.6835 < 6.0886] w=0.2261 to align # Constraint # added constraint: constraint((T0297)E134.CB, (T0297)G191.CA) [> 3.4104 = 5.6840 < 7.3892] w=0.2261 to align # Constraint # added constraint: constraint((T0297)G64.CA, (T0297)T92.CB) [> 4.4005 = 7.3342 < 9.5344] w=0.2255 to align # Constraint # added constraint: constraint((T0297)L50.CB, (T0297)Y199.CB) [> 3.5143 = 5.8571 < 7.6143] w=0.2056 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)A180.CB) [> 4.0042 = 6.6736 < 8.6757] w=0.2035 to align # Constraint # added constraint: constraint((T0297)E49.CB, (T0297)N59.CB) [> 3.7637 = 6.2729 < 8.1548] w=0.2035 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)V170.CB) [> 4.6497 = 7.7495 < 10.0744] w=0.2035 to align # Constraint # added constraint: constraint((T0297)G68.CA, (T0297)D94.CB) [> 4.5717 = 7.6195 < 9.9053] w=0.2035 to align # Constraint # added constraint: constraint((T0297)I150.CB, (T0297)F173.CB) [> 4.1400 = 6.8999 < 8.9699] w=0.2035 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)S146.CB) [> 3.7187 = 6.1978 < 8.0572] w=0.2035 to align # Constraint # added constraint: constraint((T0297)E31.CB, (T0297)G81.CA) [> 3.9594 = 6.5990 < 8.5787] w=0.2035 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)S203.CB) [> 2.9141 = 4.8569 < 6.3140] w=0.2034 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)F173.CB) [> 4.0837 = 6.8061 < 8.8480] w=0.2029 to align # Constraint # added constraint: constraint((T0297)F51.CB, (T0297)S203.CB) [> 3.0466 = 5.0777 < 6.6010] w=0.1809 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L202.CB) [> 2.9073 = 4.8455 < 6.2991] w=0.1809 to align # Constraint # added constraint: constraint((T0297)Q48.CB, (T0297)I57.CB) [> 3.8953 = 6.4921 < 8.4398] w=0.1809 to align # Constraint # added constraint: constraint((T0297)Q48.CB, (T0297)N59.CB) [> 2.8187 = 4.6978 < 6.1071] w=0.1809 to align # Constraint # added constraint: constraint((T0297)F51.CB, (T0297)K207.CB) [> 4.1005 = 6.8342 < 8.8845] w=0.1809 to align # Constraint # added constraint: constraint((T0297)E134.CB, (T0297)L183.CB) [> 3.7576 = 6.2627 < 8.1415] w=0.1809 to align # Constraint # added constraint: constraint((T0297)F51.CB, (T0297)Y199.CB) [> 4.1423 = 6.9039 < 8.9750] w=0.1809 to align # Constraint # added constraint: constraint((T0297)R135.CB, (T0297)G191.CA) [> 3.6734 = 6.1224 < 7.9591] w=0.1809 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)L192.CB) [> 3.8928 = 6.4879 < 8.4343] w=0.1809 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)S54.CB) [> 4.5080 = 7.5133 < 9.7673] w=0.1808 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)Y187.CB) [> 3.6716 = 6.1194 < 7.9552] w=0.1805 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)V142.CB) [> 4.0033 = 6.6722 < 8.6738] w=0.1805 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)G91.CA) [> 4.3299 = 7.2166 < 9.3815] w=0.1648 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)S146.CB) [> 4.1592 = 6.9321 < 9.0117] w=0.1627 to align # Constraint # added constraint: constraint((T0297)L50.CB, (T0297)Q200.CB) [> 3.3615 = 5.6026 < 7.2833] w=0.1605 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)Y143.CB) [> 4.0096 = 6.6827 < 8.6875] w=0.1605 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)S146.CB) [> 3.9454 = 6.5756 < 8.5483] w=0.1604 to align # Constraint # added constraint: constraint((T0297)S40.CB, (T0297)Y65.CB) [> 4.6112 = 7.6853 < 9.9909] w=0.1604 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L194.CB) [> 4.3698 = 7.2830 < 9.4679] w=0.1583 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L206.CB) [> 3.8162 = 6.3603 < 8.2684] w=0.1583 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)E186.CB) [> 4.5445 = 7.5743 < 9.8465] w=0.1583 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)Y187.CB) [> 3.4100 = 5.6833 < 7.3883] w=0.1583 to align # Constraint # added constraint: constraint((T0297)V170.CB, (T0297)L210.CB) [> 4.1571 = 6.9285 < 9.0071] w=0.1583 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)I196.CB) [> 3.4576 = 5.7627 < 7.4915] w=0.1583 to align # Constraint # added constraint: constraint((T0297)R135.CB, (T0297)L192.CB) [> 3.9845 = 6.6408 < 8.6331] w=0.1583 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)Y187.CB) [> 3.8855 = 6.4758 < 8.4185] w=0.1583 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)Y143.CB) [> 4.1682 = 6.9471 < 9.0312] w=0.1582 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)N59.CB) [> 3.7138 = 6.1897 < 8.0466] w=0.1582 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)E134.CB) [> 4.2361 = 7.0602 < 9.1783] w=0.1582 to align # Constraint # added constraint: constraint((T0297)A180.CB, (T0297)A201.CB) [> 3.7317 = 6.2196 < 8.0855] w=0.1582 to align # Constraint # added constraint: constraint((T0297)L121.CB, (T0297)M165.CB) [> 4.2511 = 7.0851 < 9.2107] w=0.1579 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)Y119.CB) [> 4.4454 = 7.4089 < 9.6316] w=0.1579 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)S128.CB) [> 3.9292 = 6.5486 < 8.5132] w=0.1577 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)S128.CB) [> 3.9732 = 6.6219 < 8.6085] w=0.1575 to align # Constraint # added constraint: constraint((T0297)I124.CB, (T0297)V170.CB) [> 4.2657 = 7.1095 < 9.2424] w=0.1422 to align # Constraint # added constraint: constraint((T0297)I124.CB, (T0297)F169.CB) [> 3.3711 = 5.6186 < 7.3041] w=0.1422 to align # Constraint # added constraint: constraint((T0297)V172.CB, (T0297)L194.CB) [> 4.3715 = 7.2858 < 9.4716] w=0.1379 to align # Constraint # added constraint: constraint((T0297)T122.CB, (T0297)V167.CB) [> 3.6374 = 6.0623 < 7.8811] w=0.1379 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)E103.CB) [> 3.6218 = 6.0363 < 7.8472] w=0.1375 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)P171.CB) [> 4.2578 = 7.0963 < 9.2251] w=0.1374 to align # Constraint # added constraint: constraint((T0297)P171.CB, (T0297)Y209.CB) [> 4.0448 = 6.7414 < 8.7638] w=0.1357 to align # Constraint # added constraint: constraint((T0297)Q179.CB, (T0297)K204.CB) [> 4.6709 = 7.7848 < 10.1203] w=0.1357 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)L130.CB) [> 4.5626 = 7.6044 < 9.8857] w=0.1357 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)L192.CB) [> 4.0885 = 6.8141 < 8.8584] w=0.1357 to align # Constraint # added constraint: constraint((T0297)T188.CB, (T0297)G198.CA) [> 4.3127 = 7.1878 < 9.3441] w=0.1357 to align # Constraint # added constraint: constraint((T0297)Y187.CB, (T0297)A197.CB) [> 3.5730 = 5.9550 < 7.7414] w=0.1357 to align # Constraint # added constraint: constraint((T0297)D174.CB, (T0297)S205.CB) [> 4.5045 = 7.5075 < 9.7597] w=0.1357 to align # Constraint # added constraint: constraint((T0297)V132.CB, (T0297)T188.CB) [> 4.6946 = 7.8242 < 10.1715] w=0.1357 to align # Constraint # added constraint: constraint((T0297)Y45.CB, (T0297)N59.CB) [> 4.0891 = 6.8151 < 8.8596] w=0.1357 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)Y45.CB) [> 4.4240 = 7.3734 < 9.5854] w=0.1357 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)G191.CA) [> 3.1987 = 5.3311 < 6.9304] w=0.1357 to align # Constraint # added constraint: constraint((T0297)L127.CB, (T0297)S205.CB) [> 4.5416 = 7.5693 < 9.8401] w=0.1354 to align # Constraint # added constraint: constraint((T0297)I57.CB, (T0297)K85.CB) [> 4.2656 = 7.1094 < 9.2422] w=0.1354 to align # Constraint # added constraint: constraint((T0297)V30.CB, (T0297)V58.CB) [> 3.5832 = 5.9720 < 7.7635] w=0.1354 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)R60.CB) [> 3.7835 = 6.3059 < 8.1977] w=0.1353 to align # Constraint # added constraint: constraint((T0297)E31.CB, (T0297)V58.CB) [> 3.3299 = 5.5498 < 7.2147] w=0.1353 to align # Constraint # added constraint: constraint((T0297)T188.CB, (T0297)Y199.CB) [> 3.7585 = 6.2642 < 8.1435] w=0.1351 to align # Constraint # added constraint: constraint((T0297)A116.CB, (T0297)M165.CB) [> 4.5701 = 7.6169 < 9.9019] w=0.1351 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)S205.CB) [> 3.9642 = 6.6070 < 8.5891] w=0.1351 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)L206.CB) [> 3.8827 = 6.4712 < 8.4125] w=0.1350 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)L127.CB) [> 3.7984 = 6.3306 < 8.2298] w=0.1347 to align # Constraint # added constraint: constraint((T0297)G61.CA, (T0297)L88.CB) [> 4.2096 = 7.0160 < 9.1207] w=0.1346 to align # Constraint # added constraint: constraint((T0297)T56.CB, (T0297)D84.CB) [> 3.4283 = 5.7138 < 7.4279] w=0.1345 to align # Constraint # added constraint: constraint((T0297)I57.CB, (T0297)V83.CB) [> 3.6543 = 6.0905 < 7.9177] w=0.1345 to align # Constraint # added constraint: constraint((T0297)V58.CB, (T0297)I86.CB) [> 3.8435 = 6.4058 < 8.3275] w=0.1345 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)L130.CB) [> 3.4634 = 5.7723 < 7.5039] w=0.1345 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)N59.CB) [> 3.8942 = 6.4904 < 8.4375] w=0.1188 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)L194.CB) [> 3.2662 = 5.4437 < 7.0768] w=0.1153 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)P171.CB) [> 4.3128 = 7.1880 < 9.3443] w=0.1148 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)Y157.CB) [> 4.4830 = 7.4716 < 9.7131] w=0.1131 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)Y157.CB) [> 4.3466 = 7.2443 < 9.4176] w=0.1131 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)T122.CB) [> 4.5888 = 7.6480 < 9.9425] w=0.1131 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)H193.CB) [> 3.6582 = 6.0970 < 7.9261] w=0.1131 to align # Constraint # added constraint: constraint((T0297)L69.CB, (T0297)N93.CB) [> 4.5249 = 7.5415 < 9.8039] w=0.1131 to align # Constraint # added constraint: constraint((T0297)Y138.CB, (T0297)G191.CA) [> 3.4168 = 5.6947 < 7.4031] w=0.1131 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)G198.CA) [> 2.8115 = 4.6858 < 6.0915] w=0.1130 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)S195.CB) [> 4.6845 = 7.8074 < 10.1497] w=0.1130 to align # Constraint # added constraint: constraint((T0297)L24.CB, (T0297)H77.CB) [> 3.5533 = 5.9222 < 7.6989] w=0.1129 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)K184.CB) [> 3.9566 = 6.5944 < 8.5727] w=0.1129 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)T188.CB) [> 3.9509 = 6.5848 < 8.5603] w=0.1129 to align # Constraint # added constraint: constraint((T0297)G80.CA, (T0297)T122.CB) [> 4.1281 = 6.8801 < 8.9442] w=0.1129 to align # Constraint # added constraint: constraint((T0297)E123.CB, (T0297)L210.CB) [> 4.1237 = 6.8728 < 8.9347] w=0.1128 to align # Constraint # added constraint: constraint((T0297)A161.CB, (T0297)V170.CB) [> 3.3539 = 5.5899 < 7.2668] w=0.1126 to align # Constraint # added constraint: constraint((T0297)Y157.CB, (T0297)V167.CB) [> 3.6709 = 6.1181 < 7.9535] w=0.1124 to align # Constraint # added constraint: constraint((T0297)G61.CA, (T0297)F87.CB) [> 3.8827 = 6.4711 < 8.4125] w=0.1120 to align # Constraint # added constraint: constraint((T0297)I112.CB, (T0297)Y157.CB) [> 4.1743 = 6.9571 < 9.0443] w=0.0971 to align # Constraint # added constraint: constraint((T0297)L160.CB, (T0297)F169.CB) [> 4.5683 = 7.6138 < 9.8979] w=0.0968 to align # Constraint # added constraint: constraint((T0297)T53.CB, (T0297)L206.CB) [> 3.7788 = 6.2980 < 8.1874] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)L130.CB) [> 4.1544 = 6.9240 < 9.0012] w=0.0904 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L130.CB) [> 4.3223 = 7.2038 < 9.3649] w=0.0904 to align # Constraint # added constraint: constraint((T0297)S28.CB, (T0297)Y79.CB) [> 3.9717 = 6.6195 < 8.6054] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I27.CB, (T0297)Y79.CB) [> 3.2926 = 5.4878 < 7.1341] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I27.CB, (T0297)L78.CB) [> 4.1024 = 6.8373 < 8.8885] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I27.CB, (T0297)V58.CB) [> 4.2510 = 7.0850 < 9.2106] w=0.0904 to align # Constraint # added constraint: constraint((T0297)H26.CB, (T0297)R60.CB) [> 4.6619 = 7.7698 < 10.1008] w=0.0904 to align # Constraint # added constraint: constraint((T0297)H26.CB, (T0297)V58.CB) [> 3.4029 = 5.6715 < 7.3729] w=0.0904 to align # Constraint # added constraint: constraint((T0297)L24.CB, (T0297)Y79.CB) [> 4.2475 = 7.0791 < 9.2029] w=0.0904 to align # Constraint # added constraint: constraint((T0297)L6.CB, (T0297)K20.CB) [> 4.6282 = 7.7137 < 10.0278] w=0.0904 to align # Constraint # added constraint: constraint((T0297)L6.CB, (T0297)L69.CB) [> 4.1337 = 6.8895 < 8.9564] w=0.0904 to align # Constraint # added constraint: constraint((T0297)E7.CB, (T0297)Y65.CB) [> 4.1826 = 6.9709 < 9.0622] w=0.0904 to align # Constraint # added constraint: constraint((T0297)K20.CB, (T0297)I62.CB) [> 4.6666 = 7.7777 < 10.1110] w=0.0904 to align # Constraint # added constraint: constraint((T0297)H23.CB, (T0297)V58.CB) [> 4.4103 = 7.3504 < 9.5555] w=0.0904 to align # Constraint # added constraint: constraint((T0297)H23.CB, (T0297)R60.CB) [> 2.7473 = 4.5789 < 5.9526] w=0.0904 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)S195.CB) [> 4.0781 = 6.7969 < 8.8359] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)V142.CB) [> 2.5033 = 4.1722 < 5.4239] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)N133.CB) [> 3.7063 = 6.1772 < 8.0303] w=0.0904 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)Y138.CB) [> 3.3254 = 5.5423 < 7.2050] w=0.0904 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)Y138.CB) [> 3.1242 = 5.2070 < 6.7691] w=0.0904 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)N133.CB) [> 4.1685 = 6.9474 < 9.0317] w=0.0903 to align # Constraint # added constraint: constraint((T0297)V30.CB, (T0297)S54.CB) [> 4.1363 = 6.8939 < 8.9620] w=0.0903 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)G61.CA) [> 4.2068 = 7.0113 < 9.1147] w=0.0902 to align # Constraint # added constraint: constraint((T0297)P171.CB, (T0297)S205.CB) [> 3.8485 = 6.4142 < 8.3385] w=0.0902 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)S128.CB) [> 2.9898 = 4.9831 < 6.4780] w=0.0901 to align # Constraint # added constraint: constraint((T0297)N93.CB, (T0297)L130.CB) [> 3.9438 = 6.5730 < 8.5449] w=0.0901 to align # Constraint # added constraint: constraint((T0297)E123.CB, (T0297)L206.CB) [> 4.6346 = 7.7243 < 10.0415] w=0.0901 to align # Constraint # added constraint: constraint((T0297)V30.CB, (T0297)T56.CB) [> 3.9649 = 6.6082 < 8.5907] w=0.0900 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)G61.CA) [> 4.4170 = 7.3617 < 9.5702] w=0.0896 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)G64.CA) [> 3.1869 = 5.3115 < 6.9049] w=0.0895 to align # Constraint # added constraint: constraint((T0297)G96.CA, (T0297)I129.CB) [> 4.0763 = 6.7937 < 8.8319] w=0.0895 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)N59.CB) [> 4.5343 = 7.5572 < 9.8244] w=0.0744 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)K207.CB) [> 4.5670 = 7.6117 < 9.8952] w=0.0720 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)S203.CB) [> 4.6823 = 7.8038 < 10.1449] w=0.0720 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)S146.CB) [> 4.6714 = 7.7856 < 10.1213] w=0.0701 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)Y143.CB) [> 4.1734 = 6.9557 < 9.0424] w=0.0700 to align # Constraint # added constraint: constraint((T0297)K125.CB, (T0297)Y157.CB) [> 4.3126 = 7.1877 < 9.3440] w=0.0700 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)L47.CB) [> 3.6428 = 6.0714 < 7.8927] w=0.0699 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)G198.CA) [> 3.8501 = 6.4168 < 8.3418] w=0.0678 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)S195.CB) [> 3.9972 = 6.6621 < 8.6607] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)G198.CA) [> 4.7166 = 7.8611 < 10.2194] w=0.0678 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)L206.CB) [> 4.5506 = 7.5843 < 9.8596] w=0.0678 to align # Constraint # added constraint: constraint((T0297)E134.CB, (T0297)D190.CB) [> 3.8177 = 6.3629 < 8.2718] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)L192.CB) [> 3.3811 = 5.6351 < 7.3256] w=0.0678 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)F87.CB) [> 4.7009 = 7.8348 < 10.1852] w=0.0678 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)T53.CB) [> 3.9637 = 6.6062 < 8.5881] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)D190.CB) [> 4.5275 = 7.5459 < 9.8097] w=0.0678 to align # Constraint # added constraint: constraint((T0297)V142.CB, (T0297)L192.CB) [> 4.3930 = 7.3217 < 9.5181] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)K207.CB) [> 3.0178 = 5.0296 < 6.5385] w=0.0678 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)L194.CB) [> 4.6238 = 7.7064 < 10.0183] w=0.0678 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)H193.CB) [> 4.2366 = 7.0611 < 9.1794] w=0.0678 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)P131.CB) [> 3.4267 = 5.7112 < 7.4246] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)G191.CA) [> 3.5347 = 5.8912 < 7.6585] w=0.0678 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)L127.CB) [> 2.9702 = 4.9504 < 6.4355] w=0.0678 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)G61.CA) [> 3.6303 = 6.0505 < 7.8656] w=0.0677 to align # Constraint # added constraint: constraint((T0297)D98.CB, (T0297)I144.CB) [> 3.9261 = 6.5435 < 8.5065] w=0.0677 to align # Constraint # added constraint: constraint((T0297)V29.CB, (T0297)K55.CB) [> 4.2747 = 7.1246 < 9.2619] w=0.0677 to align # Constraint # added constraint: constraint((T0297)D178.CB, (T0297)T189.CB) [> 3.7114 = 6.1857 < 8.0414] w=0.0677 to align # Constraint # added constraint: constraint((T0297)T177.CB, (T0297)D190.CB) [> 3.9470 = 6.5784 < 8.5519] w=0.0677 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)Y187.CB) [> 3.6397 = 6.0661 < 7.8860] w=0.0676 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)E168.CB) [> 4.5942 = 7.6571 < 9.9542] w=0.0676 to align # Constraint # added constraint: constraint((T0297)I57.CB, (T0297)D84.CB) [> 2.8595 = 4.7659 < 6.1957] w=0.0676 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)P171.CB) [> 4.1640 = 6.9400 < 9.0220] w=0.0676 to align # Constraint # added constraint: constraint((T0297)Y187.CB, (T0297)Y199.CB) [> 2.6866 = 4.4777 < 5.8210] w=0.0676 to align # Constraint # added constraint: constraint((T0297)S162.CB, (T0297)S205.CB) [> 3.2330 = 5.3883 < 7.0047] w=0.0676 to align # Constraint # added constraint: constraint((T0297)A161.CB, (T0297)L206.CB) [> 4.1592 = 6.9321 < 9.0117] w=0.0676 to align # Constraint # added constraint: constraint((T0297)A161.CB, (T0297)S205.CB) [> 2.8205 = 4.7007 < 6.1110] w=0.0676 to align # Constraint # added constraint: constraint((T0297)I150.CB, (T0297)S195.CB) [> 3.7200 = 6.2000 < 8.0599] w=0.0676 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)L130.CB) [> 3.4402 = 5.7337 < 7.4538] w=0.0676 to align # Constraint # added constraint: constraint((T0297)V172.CB, (T0297)D190.CB) [> 4.0081 = 6.6802 < 8.6843] w=0.0675 to align # Constraint # added constraint: constraint((T0297)F173.CB, (T0297)D190.CB) [> 4.6995 = 7.8324 < 10.1822] w=0.0675 to align # Constraint # added constraint: constraint((T0297)D174.CB, (T0297)D190.CB) [> 3.5338 = 5.8897 < 7.6566] w=0.0675 to align # Constraint # added constraint: constraint((T0297)D39.CB, (T0297)P100.CB) [> 4.5383 = 7.5638 < 9.8330] w=0.0675 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)I62.CB) [> 4.0167 = 6.6946 < 8.7029] w=0.0675 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)L206.CB) [> 3.0404 = 5.0673 < 6.5874] w=0.0675 to align # Constraint # added constraint: constraint((T0297)G91.CA, (T0297)P100.CB) [> 3.0776 = 5.1293 < 6.6681] w=0.0675 to align # Constraint # added constraint: constraint((T0297)E168.CB, (T0297)S205.CB) [> 4.1097 = 6.8495 < 8.9043] w=0.0675 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)I62.CB) [> 4.3572 = 7.2620 < 9.4406] w=0.0671 to align # Constraint # added constraint: constraint((T0297)I41.CB, (T0297)N93.CB) [> 4.7868 = 7.9781 < 10.3715] w=0.0669 to align # Constraint # added constraint: constraint((T0297)V42.CB, (T0297)N93.CB) [> 3.2035 = 5.3391 < 6.9408] w=0.0669 to align # Constraint # added constraint: constraint((T0297)E43.CB, (T0297)T92.CB) [> 3.3856 = 5.6426 < 7.3354] w=0.0669 to align # Constraint # added constraint: constraint((T0297)I62.CB, (T0297)T92.CB) [> 2.8305 = 4.7174 < 6.1326] w=0.0669 to align # Constraint # added constraint: constraint((T0297)R63.CB, (T0297)T92.CB) [> 2.7265 = 4.5442 < 5.9074] w=0.0669 to align # Constraint # added constraint: constraint((T0297)R63.CB, (T0297)V99.CB) [> 4.5720 = 7.6200 < 9.9060] w=0.0669 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)E123.CB) [> 3.9396 = 6.5660 < 8.5358] w=0.0475 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)R145.CB) [> 4.4374 = 7.3956 < 9.6143] w=0.0475 to align # Constraint # added constraint: constraint((T0297)I95.CB, (T0297)I144.CB) [> 3.0906 = 5.1511 < 6.6964] w=0.0475 to align # Constraint # added constraint: constraint((T0297)V83.CB, (T0297)P120.CB) [> 3.1084 = 5.1806 < 6.7348] w=0.0474 to align # Constraint # added constraint: constraint((T0297)L50.CB, (T0297)R63.CB) [> 4.0262 = 6.7104 < 8.7235] w=0.0452 to align # Constraint # added constraint: constraint((T0297)Y44.CB, (T0297)T189.CB) [> 4.1779 = 6.9631 < 9.0520] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L10.CB, (T0297)G68.CA) [> 4.1115 = 6.8525 < 8.9083] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L11.CB, (T0297)G68.CA) [> 3.2994 = 5.4990 < 7.1487] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L11.CB, (T0297)L69.CB) [> 4.7604 = 7.9340 < 10.3141] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L11.CB, (T0297)L71.CB) [> 2.5221 = 4.2036 < 5.4646] w=0.0452 to align # Constraint # added constraint: constraint((T0297)E7.CB, (T0297)G64.CA) [> 4.7066 = 7.8444 < 10.1977] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)K125.CB) [> 2.4561 = 4.0935 < 5.3215] w=0.0452 to align # Constraint # added constraint: constraint((T0297)V3.CB, (T0297)G68.CA) [> 4.0630 = 6.7717 < 8.8032] w=0.0452 to align # Constraint # added constraint: constraint((T0297)W9.CB, (T0297)L71.CB) [> 4.0943 = 6.8239 < 8.8710] w=0.0452 to align # Constraint # added constraint: constraint((T0297)W9.CB, (T0297)T67.CB) [> 4.1697 = 6.9495 < 9.0344] w=0.0452 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)R145.CB) [> 3.7308 = 6.2181 < 8.0835] w=0.0452 to align # Constraint # added constraint: constraint((T0297)K97.CB, (T0297)I144.CB) [> 4.5545 = 7.5908 < 9.8680] w=0.0452 to align # Constraint # added constraint: constraint((T0297)I62.CB, (T0297)L89.CB) [> 3.5856 = 5.9760 < 7.7688] w=0.0451 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)S128.CB) [> 4.7460 = 7.9099 < 10.2829] w=0.0451 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)F169.CB) [> 4.7521 = 7.9202 < 10.2963] w=0.0451 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)K125.CB) [> 4.7453 = 7.9088 < 10.2815] w=0.0451 to align # Constraint # added constraint: constraint((T0297)D98.CB, (T0297)S128.CB) [> 3.4804 = 5.8008 < 7.5410] w=0.0450 to align # Constraint # added constraint: constraint((T0297)I90.CB, (T0297)N133.CB) [> 4.1036 = 6.8393 < 8.8911] w=0.0450 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)T188.CB) [> 4.5778 = 7.6297 < 9.9185] w=0.0450 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)L47.CB) [> 4.3783 = 7.2972 < 9.4864] w=0.0450 to align # Constraint # added constraint: constraint((T0297)C175.CB, (T0297)D190.CB) [> 2.6830 = 4.4717 < 5.8132] w=0.0450 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)D190.CB) [> 3.9709 = 6.6182 < 8.6036] w=0.0450 to align # Constraint # added constraint: constraint((T0297)V29.CB, (T0297)T56.CB) [> 3.3234 = 5.5389 < 7.2006] w=0.0450 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)I62.CB) [> 4.1320 = 6.8867 < 8.9528] w=0.0450 to align # Constraint # added constraint: constraint((T0297)N33.CB, (T0297)R63.CB) [> 4.2189 = 7.0315 < 9.1409] w=0.0450 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)R63.CB) [> 3.1455 = 5.2424 < 6.8151] w=0.0450 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)G64.CA) [> 4.2401 = 7.0668 < 9.1868] w=0.0450 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)Y65.CB) [> 3.9949 = 6.6581 < 8.6556] w=0.0450 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)G64.CA) [> 2.9445 = 4.9075 < 6.3797] w=0.0450 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)Y65.CB) [> 3.8018 = 6.3363 < 8.2373] w=0.0450 to align # Constraint # added constraint: constraint((T0297)V29.CB, (T0297)N59.CB) [> 2.5212 = 4.2019 < 5.4625] w=0.0450 to align # Constraint # added constraint: constraint((T0297)F169.CB, (T0297)S205.CB) [> 2.9445 = 4.9075 < 6.3797] w=0.0450 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)Y157.CB) [> 4.6610 = 7.7684 < 10.0989] w=0.0450 to align # Constraint # added constraint: constraint((T0297)L88.CB, (T0297)V167.CB) [> 4.4915 = 7.4858 < 9.7315] w=0.0450 to align # Constraint # added constraint: constraint((T0297)I150.CB, (T0297)F169.CB) [> 3.8854 = 6.4757 < 8.4184] w=0.0446 to align # Constraint # added constraint: constraint((T0297)Y157.CB, (T0297)E168.CB) [> 4.6871 = 7.8119 < 10.1554] w=0.0446 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)Q66.CB) [> 4.2321 = 7.0536 < 9.1696] w=0.0271 to align # Constraint # added constraint: constraint((T0297)T177.CB, (T0297)H193.CB) [> 4.0549 = 6.7581 < 8.7856] w=0.0249 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L192.CB) [> 3.8153 = 6.3589 < 8.2666] w=0.0226 to align # Constraint # added constraint: constraint((T0297)L6.CB, (T0297)V99.CB) [> 4.6849 = 7.8082 < 10.1507] w=0.0226 to align # Constraint # added constraint: constraint((T0297)V3.CB, (T0297)L71.CB) [> 4.7811 = 7.9685 < 10.3591] w=0.0226 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)L194.CB) [> 4.4705 = 7.4509 < 9.6861] w=0.0226 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)K85.CB) [> 4.3842 = 7.3069 < 9.4990] w=0.0226 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)K85.CB) [> 3.2688 = 5.4480 < 7.0824] w=0.0226 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)D190.CB) [> 3.8342 = 6.3903 < 8.3073] w=0.0226 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)S128.CB) [> 4.1352 = 6.8920 < 8.9596] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L127.CB) [> 4.4805 = 7.4676 < 9.7079] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)P171.CB) [> 4.3112 = 7.1853 < 9.3408] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)P171.CB) [> 2.3016 = 3.8360 < 4.9868] w=0.0225 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)P171.CB) [> 3.5702 = 5.9504 < 7.7355] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I150.CB, (T0297)A197.CB) [> 2.9131 = 4.8551 < 6.3117] w=0.0225 to align # Constraint # added constraint: constraint((T0297)Q179.CB, (T0297)G191.CA) [> 3.9543 = 6.5904 < 8.5676] w=0.0225 to align # Constraint # added constraint: constraint((T0297)G38.CA, (T0297)T92.CB) [> 4.5118 = 7.5196 < 9.7754] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)G91.CA) [> 4.0618 = 6.7696 < 8.8005] w=0.0225 to align # Constraint # added constraint: constraint((T0297)F36.CB, (T0297)I90.CB) [> 4.6430 = 7.7383 < 10.0598] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)L89.CB) [> 4.1732 = 6.9553 < 9.0418] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L35.CB, (T0297)L88.CB) [> 3.3832 = 5.6386 < 7.3302] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)L89.CB) [> 3.5542 = 5.9237 < 7.7008] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I34.CB, (T0297)L88.CB) [> 4.7052 = 7.8421 < 10.1947] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L24.CB, (T0297)N73.CB) [> 4.1446 = 6.9077 < 8.9800] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L126.CB, (T0297)S205.CB) [> 4.4800 = 7.4667 < 9.7067] w=0.0225 to align # Constraint # added constraint: constraint((T0297)S128.CB, (T0297)D190.CB) [> 4.0620 = 6.7699 < 8.8009] w=0.0225 to align # Constraint # added constraint: constraint((T0297)P131.CB, (T0297)Y157.CB) [> 4.6198 = 7.6996 < 10.0095] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L47.CB, (T0297)L89.CB) [> 4.6057 = 7.6761 < 9.9790] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L89.CB, (T0297)L206.CB) [> 3.8672 = 6.4453 < 8.3789] w=0.0225 to align # Constraint # added constraint: constraint((T0297)P32.CB, (T0297)Y211.CB) [> 4.6407 = 7.7345 < 10.0548] w=0.0225 to align # Constraint # added constraint: constraint((T0297)T92.CB, (T0297)P171.CB) [> 3.9836 = 6.6393 < 8.6311] w=0.0225 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)Y143.CB) [> 2.8174 = 4.6957 < 6.1044] w=0.0225 to align # Constraint # added constraint: constraint((T0297)I37.CB, (T0297)L47.CB) [> 4.7382 = 7.8971 < 10.2662] w=0.0223 to align # Constraint # added constraint: constraint((T0297)Y21.CB, (T0297)K55.CB) [> 4.5459 = 7.5765 < 9.8494] w=0.0223 to align # Constraint # added constraint: constraint((T0297)K85.CB, (T0297)S203.CB) [> 3.4258 = 5.7097 < 7.4226] w=0.0045 to align # Constraint # added constraint: constraint((T0297)F87.CB, (T0297)S203.CB) [> 3.7267 = 6.2112 < 8.0746] w=0.0045 to align # Constraint # added constraint: constraint((T0297)L130.CB, (T0297)P171.CB) [> 3.9703 = 6.6172 < 8.6024] w=0.0045 to align # Constraint # added constraint: constraint((T0297)I129.CB, (T0297)Y143.CB) [> 4.2109 = 7.0181 < 9.1235] w=0.0023 to align # Constraint # added constraint: constraint((T0297)N133.CB, (T0297)P171.CB) [> 4.7914 = 7.9857 < 10.3814] w=0.0023 to align # Constraint # added constraint: constraint((T0297)P171.CB, (T0297)L192.CB) [> 4.0591 = 6.7652 < 8.7948] w=0.0023 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0297/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0297/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 546, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 550, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 552, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 726, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 728, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz Skipped atom 350, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 Skipped atom 303, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 423, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 425, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 427, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 429, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 637, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0297)S40.O and (T0297)I41.N only 0.000 apart, marking (T0297)I41.N as missing # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0297)A163.O and (T0297)Y164.N only 0.000 apart, marking (T0297)Y164.N as missing # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 211 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 211 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 211 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 211 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0297 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 256 model score -0.2579 model score -0.2747 model score -0.4235 model score -0.4063 model score -0.4022 model score -0.3853 model score -0.4205 model score -0.3223 model score -0.2923 model score -0.3057 model score -0.2263 model score -0.2514 model score -0.0736 model score -0.2193 model score -0.2410 model score -0.3356 model score -0.3592 model score -0.3553 model score -0.0081 model score 1.0025 model score 1.2433 model score 1.2493 model score 1.4372 model score 1.4919 model score 1.1185 model score -0.4131 model score -0.4700 model score -0.3934 model score 1.7198 model score 1.7177 model score 1.7179 model score -0.3644 model score -0.3770 model score -0.3409 model score -0.3726 model score -0.2714 model score -0.0221 model score -0.4087 model score -0.3254 model score -0.3863 model score -0.1783 model score -0.2434 model score 1.2722 model score 1.2729 model score 1.2698 model score 1.2686 model score 1.2682 model score -0.3849 model score -0.3451 model score -0.3573 model score -0.4187 model score -0.4227 model score -0.0839 model score -0.3749 model score -0.3409 model score -0.3644 model score -0.3726 model score -0.3675 model score -0.3311 model score -0.5099 model score -0.0795 model score -0.2442 model score 1.2680 model score 1.2688 model score 1.2682 model score 1.2683 model score 1.2687 model score 1.2682 model score 1.2683 model score 1.2687 model score 1.2690 model score 1.2771 model score 2.5209 model score 2.5828 model score 2.3477 model score 2.4677 model score 2.0961 model score -0.4153 model score -0.4405 model score -0.4164 model score -0.0929 model score -0.2549 model score 1.2680 model score 1.2678 model score 1.2679 model score 1.2686 model score 1.2682 model score -0.4046 model score -0.3947 model score -0.3130 model score -0.2010 model score -0.1291 model score -0.4117 model score -0.4464 model score -0.4404 model score -0.2253 model score -0.3266 model score -0.4550 model score -0.4155 model score -0.4364 model score -0.3612 model score 0.2550 model score -0.3839 model score 0.8610 model score 1.0570 model score -0.1256 model score -0.0810 model score -0.0796 model score -0.0874 model score -0.0697 model score 1.2777 model score -0.4257 model score -0.3138 model score -0.3437 model score -0.2982 model score 1.6983 model score -0.4365 model score -0.3808 model score -0.4313 model score -0.4360 model score -0.4175 model score 1.2680 model score -0.4174 model score -0.4293 model score -0.4274 model score -0.4129 model score -0.4298 model score -0.3582 model score -0.3547 model score -0.4175 model score -0.4293 model score -0.4372 model score -0.4203 model score -0.4175 model score -0.4139 model score -0.4015 model score -0.4177 model score -0.4131 model score -0.3995 model score -0.4019 model score -0.4381 model score -0.4019 model score -0.3733 model score -0.1523 model score -0.3170 model score -0.2908 model score -0.2925 model score -0.4183 model score -0.4552 model score -0.4553 model score -0.4223 model score -0.4321 model score -0.4181 model score -0.3596 model score -0.3765 model score -0.3398 model score -0.1307 model score 0.7562 model score -0.4303 model score -0.3645 model score -0.3213 model score -0.4208 model score -0.3574 model score -0.4540 model score -0.3523 model score -0.3861 model score -0.4223 model score -0.3492 model score 1.2682 model score 1.2683 model score 1.2680 model score 1.2683 model score 1.2682 model score 1.2686 model score 1.2678 model score 1.2680 model score 1.2679 model score 1.2677 model score 1.2680 model score 1.2678 model score -0.4004 model score -0.1265 model score 0.0156 model score -0.3141 model score -0.2236 model score -0.4552 model score -0.4097 model score -0.3367 model score -0.2534 model score -0.2644 model score -0.4445 model score -0.3770 model score -0.3096 model score -0.2391 model score -0.2827 model score -0.4504 model score -0.3368 model score -0.4097 model score -0.2534 model score -0.2879 model score 1.2679 model score 1.2678 model score 1.2675 model score 1.2677 model score 1.2683 model score -0.4115 model score 1.2679 model score 1.2678 model score 1.2675 model score 1.2677 model score 1.2683 model score -0.4149 model score -0.4269 model score -0.3948 model score -0.4019 model score -0.4301 model score -0.4153 model score -0.4479 model score 1.2682 model score 1.2690 model score 1.2688 model score 1.2680 model score 1.2687 model score 1.2675 model score 1.2686 model score 1.2683 model score 1.2682 model score 1.2690 model score -0.4232 model score -0.4171 model score -0.4140 model score -0.3869 model score -0.4137 model score 2.0982 model score 2.5463 model score 2.3123 model score 2.1376 model score 2.1335 model score -0.4200 model score -0.4069 model score -0.3621 model score -0.3031 model score 1.6891 model score -0.1703 model score -0.3530 model score -0.3760 model score -0.3645 model score -0.2568 model score -0.4581 model score -0.4302 model score -0.3958 model score -0.3204 model score -0.3345 model score -0.2711 model score -0.2988 model score -0.3694 weight: 0.9267 eval: -0.2579 min: -0.5099 max: 2.5828 weight: 0.9315 eval: -0.2747 min: -0.5099 max: 2.5828 weight: 0.9749 eval: -0.4235 min: -0.5099 max: 2.5828 weight: 0.9698 eval: -0.4063 min: -0.5099 max: 2.5828 weight: 0.9686 eval: -0.4022 min: -0.5099 max: 2.5828 weight: 0.9637 eval: -0.3853 min: -0.5099 max: 2.5828 weight: 0.9740 eval: -0.4205 min: -0.5099 max: 2.5828 weight: 0.9454 eval: -0.3223 min: -0.5099 max: 2.5828 weight: 0.9367 eval: -0.2923 min: -0.5099 max: 2.5828 weight: 0.9406 eval: -0.3057 min: -0.5099 max: 2.5828 weight: 0.9175 eval: -0.2263 min: -0.5099 max: 2.5828 weight: 0.9248 eval: -0.2514 min: -0.5099 max: 2.5828 weight: 0.8730 eval: -0.0736 min: -0.5099 max: 2.5828 weight: 0.9154 eval: -0.2193 min: -0.5099 max: 2.5828 weight: 0.9217 eval: -0.2410 min: -0.5099 max: 2.5828 weight: 0.9493 eval: -0.3356 min: -0.5099 max: 2.5828 weight: 0.9561 eval: -0.3592 min: -0.5099 max: 2.5828 weight: 0.9550 eval: -0.3553 min: -0.5099 max: 2.5828 weight: 0.8540 eval: -0.0081 min: -0.5099 max: 2.5828 weight: 0.5599 eval: 1.0025 min: -0.5099 max: 2.5828 weight: 0.4898 eval: 1.2433 min: -0.5099 max: 2.5828 weight: 0.4881 eval: 1.2493 min: -0.5099 max: 2.5828 weight: 0.4334 eval: 1.4372 min: -0.5099 max: 2.5828 weight: 0.4175 eval: 1.4919 min: -0.5099 max: 2.5828 weight: 0.5261 eval: 1.1185 min: -0.5099 max: 2.5828 weight: 0.9718 eval: -0.4131 min: -0.5099 max: 2.5828 weight: 0.9884 eval: -0.4700 min: -0.5099 max: 2.5828 weight: 0.9661 eval: -0.3934 min: -0.5099 max: 2.5828 weight: 0.3511 eval: 1.7198 min: -0.5099 max: 2.5828 weight: 0.3517 eval: 1.7177 min: -0.5099 max: 2.5828 weight: 0.3517 eval: 1.7179 min: -0.5099 max: 2.5828 weight: 0.9577 eval: -0.3644 min: -0.5099 max: 2.5828 weight: 0.9613 eval: -0.3770 min: -0.5099 max: 2.5828 weight: 0.9508 eval: -0.3409 min: -0.5099 max: 2.5828 weight: 0.9600 eval: -0.3726 min: -0.5099 max: 2.5828 weight: 0.9306 eval: -0.2714 min: -0.5099 max: 2.5828 weight: 0.8580 eval: -0.0221 min: -0.5099 max: 2.5828 weight: 0.9705 eval: -0.4087 min: -0.5099 max: 2.5828 weight: 0.9463 eval: -0.3254 min: -0.5099 max: 2.5828 weight: 0.9640 eval: -0.3863 min: -0.5099 max: 2.5828 weight: 0.9035 eval: -0.1783 min: -0.5099 max: 2.5828 weight: 0.9224 eval: -0.2434 min: -0.5099 max: 2.5828 weight: 0.4814 eval: 1.2722 min: -0.5099 max: 2.5828 weight: 0.4812 eval: 1.2729 min: -0.5099 max: 2.5828 weight: 0.4821 eval: 1.2698 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2686 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.9636 eval: -0.3849 min: -0.5099 max: 2.5828 weight: 0.9520 eval: -0.3451 min: -0.5099 max: 2.5828 weight: 0.9556 eval: -0.3573 min: -0.5099 max: 2.5828 weight: 0.9735 eval: -0.4187 min: -0.5099 max: 2.5828 weight: 0.9746 eval: -0.4227 min: -0.5099 max: 2.5828 weight: 0.8760 eval: -0.0839 min: -0.5099 max: 2.5828 weight: 0.9607 eval: -0.3749 min: -0.5099 max: 2.5828 weight: 0.9508 eval: -0.3409 min: -0.5099 max: 2.5828 weight: 0.9577 eval: -0.3644 min: -0.5099 max: 2.5828 weight: 0.9600 eval: -0.3726 min: -0.5099 max: 2.5828 weight: 0.9585 eval: -0.3675 min: -0.5099 max: 2.5828 weight: 0.9480 eval: -0.3311 min: -0.5099 max: 2.5828 weight: 1.0000 eval: -0.5099 min: -0.5099 max: 2.5828 weight: 0.8747 eval: -0.0795 min: -0.5099 max: 2.5828 weight: 0.9227 eval: -0.2442 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2688 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2687 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2687 min: -0.5099 max: 2.5828 weight: 0.4823 eval: 1.2690 min: -0.5099 max: 2.5828 weight: 0.4800 eval: 1.2771 min: -0.5099 max: 2.5828 weight: 0.1180 eval: 2.5209 min: -0.5099 max: 2.5828 weight: 0.1000 eval: 2.5828 min: -0.5099 max: 2.5828 weight: 0.1684 eval: 2.3477 min: -0.5099 max: 2.5828 weight: 0.1335 eval: 2.4677 min: -0.5099 max: 2.5828 weight: 0.2416 eval: 2.0961 min: -0.5099 max: 2.5828 weight: 0.9725 eval: -0.4153 min: -0.5099 max: 2.5828 weight: 0.9798 eval: -0.4405 min: -0.5099 max: 2.5828 weight: 0.9728 eval: -0.4164 min: -0.5099 max: 2.5828 weight: 0.8787 eval: -0.0929 min: -0.5099 max: 2.5828 weight: 0.9258 eval: -0.2549 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2678 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2679 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2686 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.9694 eval: -0.4046 min: -0.5099 max: 2.5828 weight: 0.9665 eval: -0.3947 min: -0.5099 max: 2.5828 weight: 0.9427 eval: -0.3130 min: -0.5099 max: 2.5828 weight: 0.9101 eval: -0.2010 min: -0.5099 max: 2.5828 weight: 0.8892 eval: -0.1291 min: -0.5099 max: 2.5828 weight: 0.9714 eval: -0.4117 min: -0.5099 max: 2.5828 weight: 0.9815 eval: -0.4464 min: -0.5099 max: 2.5828 weight: 0.9798 eval: -0.4404 min: -0.5099 max: 2.5828 weight: 0.9172 eval: -0.2253 min: -0.5099 max: 2.5828 weight: 0.9467 eval: -0.3266 min: -0.5099 max: 2.5828 weight: 0.9840 eval: -0.4550 min: -0.5099 max: 2.5828 weight: 0.9725 eval: -0.4155 min: -0.5099 max: 2.5828 weight: 0.9786 eval: -0.4364 min: -0.5099 max: 2.5828 weight: 0.9567 eval: -0.3612 min: -0.5099 max: 2.5828 weight: 0.7774 eval: 0.2550 min: -0.5099 max: 2.5828 weight: 0.9633 eval: -0.3839 min: -0.5099 max: 2.5828 weight: 0.6011 eval: 0.8610 min: -0.5099 max: 2.5828 weight: 0.5440 eval: 1.0570 min: -0.5099 max: 2.5828 weight: 0.8882 eval: -0.1256 min: -0.5099 max: 2.5828 weight: 0.8752 eval: -0.0810 min: -0.5099 max: 2.5828 weight: 0.8748 eval: -0.0796 min: -0.5099 max: 2.5828 weight: 0.8770 eval: -0.0874 min: -0.5099 max: 2.5828 weight: 0.8719 eval: -0.0697 min: -0.5099 max: 2.5828 weight: 0.4798 eval: 1.2777 min: -0.5099 max: 2.5828 weight: 0.9755 eval: -0.4257 min: -0.5099 max: 2.5828 weight: 0.9429 eval: -0.3138 min: -0.5099 max: 2.5828 weight: 0.9516 eval: -0.3437 min: -0.5099 max: 2.5828 weight: 0.9384 eval: -0.2982 min: -0.5099 max: 2.5828 weight: 0.3574 eval: 1.6983 min: -0.5099 max: 2.5828 weight: 0.9786 eval: -0.4365 min: -0.5099 max: 2.5828 weight: 0.9624 eval: -0.3808 min: -0.5099 max: 2.5828 weight: 0.9771 eval: -0.4313 min: -0.5099 max: 2.5828 weight: 0.9785 eval: -0.4360 min: -0.5099 max: 2.5828 weight: 0.9731 eval: -0.4175 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.9731 eval: -0.4174 min: -0.5099 max: 2.5828 weight: 0.9765 eval: -0.4293 min: -0.5099 max: 2.5828 weight: 0.9760 eval: -0.4274 min: -0.5099 max: 2.5828 weight: 0.9718 eval: -0.4129 min: -0.5099 max: 2.5828 weight: 0.9767 eval: -0.4298 min: -0.5099 max: 2.5828 weight: 0.9559 eval: -0.3582 min: -0.5099 max: 2.5828 weight: 0.9548 eval: -0.3547 min: -0.5099 max: 2.5828 weight: 0.9731 eval: -0.4175 min: -0.5099 max: 2.5828 weight: 0.9765 eval: -0.4293 min: -0.5099 max: 2.5828 weight: 0.9788 eval: -0.4372 min: -0.5099 max: 2.5828 weight: 0.9739 eval: -0.4203 min: -0.5099 max: 2.5828 weight: 0.9731 eval: -0.4175 min: -0.5099 max: 2.5828 weight: 0.9721 eval: -0.4139 min: -0.5099 max: 2.5828 weight: 0.9685 eval: -0.4015 min: -0.5099 max: 2.5828 weight: 0.9731 eval: -0.4177 min: -0.5099 max: 2.5828 weight: 0.9718 eval: -0.4131 min: -0.5099 max: 2.5828 weight: 0.9679 eval: -0.3995 min: -0.5099 max: 2.5828 weight: 0.9686 eval: -0.4019 min: -0.5099 max: 2.5828 weight: 0.9791 eval: -0.4381 min: -0.5099 max: 2.5828 weight: 0.9686 eval: -0.4019 min: -0.5099 max: 2.5828 weight: 0.9603 eval: -0.3733 min: -0.5099 max: 2.5828 weight: 0.8959 eval: -0.1523 min: -0.5099 max: 2.5828 weight: 0.9439 eval: -0.3170 min: -0.5099 max: 2.5828 weight: 0.9362 eval: -0.2908 min: -0.5099 max: 2.5828 weight: 0.9367 eval: -0.2925 min: -0.5099 max: 2.5828 weight: 0.9733 eval: -0.4183 min: -0.5099 max: 2.5828 weight: 0.9841 eval: -0.4552 min: -0.5099 max: 2.5828 weight: 0.9841 eval: -0.4553 min: -0.5099 max: 2.5828 weight: 0.9745 eval: -0.4223 min: -0.5099 max: 2.5828 weight: 0.9774 eval: -0.4321 min: -0.5099 max: 2.5828 weight: 0.9733 eval: -0.4181 min: -0.5099 max: 2.5828 weight: 0.9563 eval: -0.3596 min: -0.5099 max: 2.5828 weight: 0.9612 eval: -0.3765 min: -0.5099 max: 2.5828 weight: 0.9505 eval: -0.3398 min: -0.5099 max: 2.5828 weight: 0.8896 eval: -0.1307 min: -0.5099 max: 2.5828 weight: 0.6316 eval: 0.7562 min: -0.5099 max: 2.5828 weight: 0.9768 eval: -0.4303 min: -0.5099 max: 2.5828 weight: 0.9577 eval: -0.3645 min: -0.5099 max: 2.5828 weight: 0.9451 eval: -0.3213 min: -0.5099 max: 2.5828 weight: 0.9741 eval: -0.4208 min: -0.5099 max: 2.5828 weight: 0.9556 eval: -0.3574 min: -0.5099 max: 2.5828 weight: 0.9837 eval: -0.4540 min: -0.5099 max: 2.5828 weight: 0.9541 eval: -0.3523 min: -0.5099 max: 2.5828 weight: 0.9640 eval: -0.3861 min: -0.5099 max: 2.5828 weight: 0.9745 eval: -0.4223 min: -0.5099 max: 2.5828 weight: 0.9532 eval: -0.3492 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2686 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2678 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2679 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2677 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2678 min: -0.5099 max: 2.5828 weight: 0.9681 eval: -0.4004 min: -0.5099 max: 2.5828 weight: 0.8884 eval: -0.1265 min: -0.5099 max: 2.5828 weight: 0.8471 eval: 0.0156 min: -0.5099 max: 2.5828 weight: 0.9430 eval: -0.3141 min: -0.5099 max: 2.5828 weight: 0.9167 eval: -0.2236 min: -0.5099 max: 2.5828 weight: 0.9841 eval: -0.4552 min: -0.5099 max: 2.5828 weight: 0.9708 eval: -0.4097 min: -0.5099 max: 2.5828 weight: 0.9496 eval: -0.3367 min: -0.5099 max: 2.5828 weight: 0.9254 eval: -0.2534 min: -0.5099 max: 2.5828 weight: 0.9286 eval: -0.2644 min: -0.5099 max: 2.5828 weight: 0.9809 eval: -0.4445 min: -0.5099 max: 2.5828 weight: 0.9613 eval: -0.3770 min: -0.5099 max: 2.5828 weight: 0.9417 eval: -0.3096 min: -0.5099 max: 2.5828 weight: 0.9212 eval: -0.2391 min: -0.5099 max: 2.5828 weight: 0.9339 eval: -0.2827 min: -0.5099 max: 2.5828 weight: 0.9827 eval: -0.4504 min: -0.5099 max: 2.5828 weight: 0.9496 eval: -0.3368 min: -0.5099 max: 2.5828 weight: 0.9708 eval: -0.4097 min: -0.5099 max: 2.5828 weight: 0.9254 eval: -0.2534 min: -0.5099 max: 2.5828 weight: 0.9354 eval: -0.2879 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2679 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2678 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2675 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2677 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.9714 eval: -0.4115 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2679 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2678 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2675 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2677 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.9724 eval: -0.4149 min: -0.5099 max: 2.5828 weight: 0.9759 eval: -0.4269 min: -0.5099 max: 2.5828 weight: 0.9665 eval: -0.3948 min: -0.5099 max: 2.5828 weight: 0.9686 eval: -0.4019 min: -0.5099 max: 2.5828 weight: 0.9768 eval: -0.4301 min: -0.5099 max: 2.5828 weight: 0.9725 eval: -0.4153 min: -0.5099 max: 2.5828 weight: 0.9819 eval: -0.4479 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4823 eval: 1.2690 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2688 min: -0.5099 max: 2.5828 weight: 0.4826 eval: 1.2680 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2687 min: -0.5099 max: 2.5828 weight: 0.4827 eval: 1.2675 min: -0.5099 max: 2.5828 weight: 0.4824 eval: 1.2686 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2683 min: -0.5099 max: 2.5828 weight: 0.4825 eval: 1.2682 min: -0.5099 max: 2.5828 weight: 0.4823 eval: 1.2690 min: -0.5099 max: 2.5828 weight: 0.9747 eval: -0.4232 min: -0.5099 max: 2.5828 weight: 0.9730 eval: -0.4171 min: -0.5099 max: 2.5828 weight: 0.9721 eval: -0.4140 min: -0.5099 max: 2.5828 weight: 0.9642 eval: -0.3869 min: -0.5099 max: 2.5828 weight: 0.9720 eval: -0.4137 min: -0.5099 max: 2.5828 weight: 0.2410 eval: 2.0982 min: -0.5099 max: 2.5828 weight: 0.1106 eval: 2.5463 min: -0.5099 max: 2.5828 weight: 0.1787 eval: 2.3123 min: -0.5099 max: 2.5828 weight: 0.2296 eval: 2.1376 min: -0.5099 max: 2.5828 weight: 0.2307 eval: 2.1335 min: -0.5099 max: 2.5828 weight: 0.9738 eval: -0.4200 min: -0.5099 max: 2.5828 weight: 0.9700 eval: -0.4069 min: -0.5099 max: 2.5828 weight: 0.9570 eval: -0.3621 min: -0.5099 max: 2.5828 weight: 0.9398 eval: -0.3031 min: -0.5099 max: 2.5828 weight: 0.3601 eval: 1.6891 min: -0.5099 max: 2.5828 weight: 0.9012 eval: -0.1703 min: -0.5099 max: 2.5828 weight: 0.9543 eval: -0.3530 min: -0.5099 max: 2.5828 weight: 0.9610 eval: -0.3760 min: -0.5099 max: 2.5828 weight: 0.9577 eval: -0.3645 min: -0.5099 max: 2.5828 weight: 0.9263 eval: -0.2568 min: -0.5099 max: 2.5828 weight: 0.9849 eval: -0.4581 min: -0.5099 max: 2.5828 weight: 0.9768 eval: -0.4302 min: -0.5099 max: 2.5828 weight: 0.9668 eval: -0.3958 min: -0.5099 max: 2.5828 weight: 0.9448 eval: -0.3204 min: -0.5099 max: 2.5828 weight: 0.9490 eval: -0.3345 min: -0.5099 max: 2.5828 weight: 0.9305 eval: -0.2711 min: -0.5099 max: 2.5828 weight: 0.9386 eval: -0.2988 min: -0.5099 max: 2.5828 weight: 0.9591 eval: -0.3694 min: -0.5099 max: 2.5828 Adding 6669 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -362.7846, CN propb: -362.7846 weights: 0.3501 constraints: 653 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 653 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 653 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6016 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6016 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6669 # command: