# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0294/ # command:# Making conformation for sequence T0294 numbered 1 through 328 Created new target T0294 from T0294.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0294/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0294/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0294//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0294/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0294/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0294/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f1kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f1kA expands to /projects/compbio/data/pdb/2f1k.pdb.gz 2f1kA:Skipped atom 152, because occupancy 0.4 <= existing 0.600 in 2f1kA Skipped atom 444, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 446, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 807, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 809, because occupancy 0.500 <= existing 0.500 in 2f1kA Bad short name: OD3 for alphabet: pdb_atoms Skipped atom 1215, because occupancy 0.400 <= existing 0.600 in 2f1kA Skipped atom 1217, because occupancy 0.400 <= existing 0.600 in 2f1kA Skipped atom 1219, because occupancy 0.400 <= existing 0.600 in 2f1kA Skipped atom 1221, because occupancy 0.400 <= existing 0.600 in 2f1kA Skipped atom 1223, because occupancy 0.400 <= existing 0.600 in 2f1kA Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1703, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1705, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1707, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1717, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1719, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1721, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1723, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1727, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1858, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1860, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1862, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1864, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1866, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1868, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1870, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1872, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1874, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1876, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1878, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1967, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1969, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1988, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1990, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1992, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1994, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1996, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 1998, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 2000, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 2002, because occupancy 0.500 <= existing 0.500 in 2f1kA Skipped atom 2004, because occupancy 0.500 <= existing 0.500 in 2f1kA # T0294 read from 2f1kA/merged-good-all-a2m # 2f1kA read from 2f1kA/merged-good-all-a2m # adding 2f1kA to template set # found chain 2f1kA in template set Warning: unaligning (T0294)S154 because first residue in template chain is (2f1kA)M1 Warning: unaligning (T0294)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2f1kA)A115 Warning: unaligning (T0294)D269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f1kA)A115 Warning: unaligning (T0294)V270 because of BadResidue code BAD_PEPTIDE in next template residue (2f1kA)T117 Warning: unaligning (T0294)T271 because of BadResidue code BAD_PEPTIDE at template residue (2f1kA)T117 Warning: unaligning (T0294)S272 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)A118 Warning: unaligning (T0294)P273 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f1kA)Q120 Warning: unaligning (T0294)E274 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)Q120 Warning: unaligning (T0294)N303 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2f1kA)L151 Warning: unaligning (T0294)M305 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f1kA)L151 T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 2f1kA 2 :KIGVVGLGLIGASLAGDLRRRGH # choosing archetypes in rotamer library T0294 179 :RFLYTGRQPR 2f1kA 25 :YLIGVSRQQS T0294 189 :PEEAAEFQA 2f1kA 36 :CEKAVERQL T0294 198 :EFVSTPELAAQSDFIVVACS 2f1kA 47 :EAGQDLSLLQTAKIIFLCTP T0294 224 :GLC 2f1kA 68 :QLI T0294 228 :KDFFQKM 2f1kA 71 :LPTLEKL T0294 235 :KETAVFINISR 2f1kA 82 :SPTAIVTDVAS T0294 249 :VNQDDLYQALA 2f1kA 93 :VKTAIAEPASQ T0294 260 :SGKIAAA 2f1kA 106 :SGFIGGH T0294 276 :LPTNHPLLTLK 2f1kA 124 :GAEENLFVNAP T0294 288 :CVILP 2f1kA 135 :YVLTP T0294 296 :SATHRTR 2f1kA 142 :YTDPEQL T0294 306 :SLL 2f1kA 152 :RSV Number of specific fragments extracted= 13 number of extra gaps= 0 total=13 Number of alignments=1 # 2f1kA read from 2f1kA/merged-good-all-a2m # found chain 2f1kA in template set Warning: unaligning (T0294)S154 because first residue in template chain is (2f1kA)M1 Warning: unaligning (T0294)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2f1kA)A115 Warning: unaligning (T0294)D269 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f1kA)A115 Warning: unaligning (T0294)L276 because of BadResidue code BAD_PEPTIDE in next template residue (2f1kA)T117 Warning: unaligning (T0294)P277 because of BadResidue code BAD_PEPTIDE at template residue (2f1kA)T117 Warning: unaligning (T0294)T278 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)A118 Warning: unaligning (T0294)N279 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f1kA)Q120 Warning: unaligning (T0294)H280 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)Q120 T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 2f1kA 2 :KIGVVGLGLIGASLAGDLRRRGH T0294 179 :RFLYTGRQPR 2f1kA 25 :YLIGVSRQQS T0294 189 :PEEAAEFQA 2f1kA 36 :CEKAVERQL T0294 198 :EFVSTPELAAQSDFIVVACS 2f1kA 47 :EAGQDLSLLQTAKIIFLCTP T0294 224 :GLC 2f1kA 68 :QLI T0294 228 :KDFFQKM 2f1kA 71 :LPTLEKL T0294 235 :KETAVFINISR 2f1kA 82 :SPTAIVTDVAS T0294 249 :VNQDDLYQALA 2f1kA 93 :VKTAIAEPASQ T0294 260 :SGKIAAA 2f1kA 106 :SGFIGGH T0294 281 :PLLTLKN 2f1kA 121 :GIDGAEE Number of specific fragments extracted= 10 number of extra gaps= 0 total=23 Number of alignments=2 # 2f1kA read from 2f1kA/merged-good-all-a2m # found chain 2f1kA in template set Warning: unaligning (T0294)S154 because first residue in template chain is (2f1kA)M1 Warning: unaligning (T0294)G267 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2f1kA)A115 Warning: unaligning (T0294)P275 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f1kA)A115 Warning: unaligning (T0294)L276 because of BadResidue code BAD_PEPTIDE in next template residue (2f1kA)T117 Warning: unaligning (T0294)P277 because of BadResidue code BAD_PEPTIDE at template residue (2f1kA)T117 Warning: unaligning (T0294)T278 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)A118 Warning: unaligning (T0294)N279 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f1kA)Q120 Warning: unaligning (T0294)H280 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f1kA)Q120 T0294 155 :TVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 2f1kA 2 :KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ T0294 191 :E 2f1kA 34 :S T0294 192 :AAEFQAEFVSTPELAAQSDFIVVACS 2f1kA 41 :ERQLVDEAGQDLSLLQTAKIIFLCTP T0294 224 :GLC 2f1kA 68 :QLI T0294 228 :KDFFQKM 2f1kA 71 :LPTLEKL T0294 235 :KETAVFINIS 2f1kA 82 :SPTAIVTDVA T0294 248 :VVNQDDLYQALA 2f1kA 92 :SVKTAIAEPASQ T0294 260 :SGKIAAA 2f1kA 106 :SGFIGGH T0294 281 :PLLTLK 2f1kA 121 :GIDGAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=32 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qp8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qp8A expands to /projects/compbio/data/pdb/1qp8.pdb.gz 1qp8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1qp8A/merged-good-all-a2m # 1qp8A read from 1qp8A/merged-good-all-a2m # adding 1qp8A to template set # found chain 1qp8A in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1qp8A)M1 Warning: unaligning (T0294)H53 because of BadResidue code BAD_PEPTIDE in next template residue (1qp8A)A34 Warning: unaligning (T0294)G54 because of BadResidue code BAD_PEPTIDE at template residue (1qp8A)A34 T0294 8 :KVFVTRRIPAEGRVALARA 1qp8A 2 :ELYVNFELPPEAEEELRKY T0294 29 :CEVE 1qp8A 21 :FKIV T0294 35 :D 1qp8A 25 :R T0294 39 :PIP 1qp8A 26 :GGD T0294 49 :VAGA 1qp8A 29 :LGNV T0294 58 :LLSDHVDKRILDAA 1qp8A 35 :ALVSRITAEELAKM T0294 73 :ANLKVISTMSVGIDHLAL 1qp8A 49 :PRLKFIQVVTAGLDHLPW T0294 95 :KR 1qp8A 67 :ES T0294 97 :GIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPL 1qp8A 72 :HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEI T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGV 1qp8A 120 :PLIQGEKVAVLGLGEIGTRVGKILAALGA T0294 179 :RFLYTGRQPR 1qp8A 149 :QVRGFSRTPK T0294 196 :QAEFV 1qp8A 161 :PWRFT T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1qp8A 167 :SLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKD T0294 281 :PLLTLKNCVILPHIGS 1qp8A 248 :EFFSLPNVVATPWVAG T0294 297 :ATHRTRNTMSLLAANNLLAGLRGEPMPSELK 1qp8A 266 :GNERVWRQMVMEAVRNLITYATGGRPRNIAK Number of specific fragments extracted= 15 number of extra gaps= 1 total=47 Number of alignments=4 # 1qp8A read from 1qp8A/merged-good-all-a2m # found chain 1qp8A in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1qp8A)M1 Warning: unaligning (T0294)H53 because of BadResidue code BAD_PEPTIDE in next template residue (1qp8A)A34 T0294 8 :KVFVTRRIPAEGRVALARAA 1qp8A 2 :ELYVNFELPPEAEEELRKYF T0294 30 :EVEQWD 1qp8A 22 :KIVRGG T0294 41 :P 1qp8A 28 :D T0294 49 :VAGA 1qp8A 29 :LGNV T0294 58 :LLSDHVDKRILDAA 1qp8A 35 :ALVSRITAEELAKM T0294 73 :ANLKVISTMSVGIDHLA 1qp8A 49 :PRLKFIQVVTAGLDHLP T0294 96 :RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1qp8A 71 :PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV T0294 147 :CGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1qp8A 118 :EIPLIQGEKVAVLGLGEIGTRVGKILAALGA T0294 179 :RFLYTGRQPR 1qp8A 149 :QVRGFSRTPK T0294 195 :FQAEFV 1qp8A 160 :GPWRFT T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1qp8A 167 :SLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKD T0294 281 :PLLTLKNCVILPHIGS 1qp8A 248 :EFFSLPNVVATPWVAG T0294 297 :ATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 1qp8A 266 :GNERVWRQMVMEAVRNLITYATGGRPRNIAKR Number of specific fragments extracted= 13 number of extra gaps= 1 total=60 Number of alignments=5 # 1qp8A read from 1qp8A/merged-good-all-a2m # found chain 1qp8A in template set Warning: unaligning (T0294)L58 because of BadResidue code BAD_PEPTIDE at template residue (1qp8A)A34 T0294 35 :DSDEPIPAKELERGVAGAHGL 1qp8A 4 :YVNFELPPEAEEELRKYFKIV T0294 59 :LSDHVDKRILDAAGANLKVISTMSVGIDHLALD 1qp8A 35 :ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWE T0294 96 :RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1qp8A 71 :PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV T0294 147 :CGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRP 1qp8A 118 :EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1qp8A 161 :PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKD T0294 281 :PLLTLKNCVILPHIGS 1qp8A 248 :EFFSLPNVVATPWVAG T0294 297 :ATHRTRNTMSLLAANNLLAGLRGEPMPSELK 1qp8A 266 :GNERVWRQMVMEAVRNLITYATGGRPRNIAK Number of specific fragments extracted= 7 number of extra gaps= 1 total=67 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x13A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x13A expands to /projects/compbio/data/pdb/1x13.pdb.gz 1x13A:# T0294 read from 1x13A/merged-good-all-a2m # 1x13A read from 1x13A/merged-good-all-a2m # adding 1x13A to template set # found chain 1x13A in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1x13A)G1001 Warning: unaligning (T0294)T202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1x13A)G1223 Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1x13A)D1343 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (1x13A)D1343 T0294 8 :KVFVTRR 1x13A 1002 :RIGIPRE T0294 15 :IPAEGRVALAR 1x13A 1018 :ATPKTVEQLLK T0294 27 :ADCEVEQWDS 1x13A 1029 :LGFTVAVESG T0294 39 :PIPAKELERG 1x13A 1044 :SFDDKAFVQA T0294 51 :GAHGL 1x13A 1054 :GAEIV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLT 1x13A 1068 :IILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPR T0294 109 :DTTAELAVSLLLTTCRRLP 1x13A 1131 :SSMANIAGYRAIVEAAHEF T0294 139 :TSW 1x13A 1150 :GRF T0294 146 :LCGY 1x13A 1153 :FTGQ T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1x13A 1162 :KVPPAKVMVIGAGVAGLAAIGAANSLGA T0294 179 :RFLYTGRQP 1x13A 1190 :IVRAFDTRP T0294 188 :RPEEAAEFQAEFVS 1x13A 1200 :VKEQVQSMGAEFLE T0294 204 :ELAAQSDFIVV 1x13A 1244 :AQAKEVDIIVT T0294 216 :CSLTPA 1x13A 1255 :TALIPG T0294 222 :TEGLCNKDFFQKMKETAVFINISR 1x13A 1263 :APKLITREMVDSMKAGSVIVDLAA T0294 246 :GDV 1x13A 1290 :GNC T0294 260 :SGKIAA 1x13A 1297 :PGEIFT T0294 277 :PTNH 1x13A 1303 :TENG T0294 288 :CVILPH 1x13A 1307 :VKVIGY T0294 294 :IGSATHRTRNTMSLLAANNLLAGLRG 1x13A 1316 :PGRLPTQSSQLYGTNLVNLLKLLCKE T0294 322 :M 1x13A 1344 :G Number of specific fragments extracted= 21 number of extra gaps= 1 total=88 Number of alignments=7 # 1x13A read from 1x13A/merged-good-all-a2m # found chain 1x13A in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1x13A)G1001 Warning: unaligning (T0294)T202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1x13A)G1223 Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1x13A)D1343 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (1x13A)D1343 T0294 8 :KVFVTRR 1x13A 1002 :RIGIPRE T0294 15 :IPAEGRVALARA 1x13A 1018 :ATPKTVEQLLKL T0294 28 :DCEVEQWDS 1x13A 1030 :GFTVAVESG T0294 39 :PIPAKELERG 1x13A 1044 :SFDDKAFVQA T0294 51 :GAHGL 1x13A 1054 :GAEIV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLT 1x13A 1068 :IILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPR T0294 109 :DTTAELAVSLLLTTCRRL 1x13A 1131 :SSMANIAGYRAIVEAAHE T0294 138 :WTSWKP 1x13A 1149 :FGRFFT T0294 144 :LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1x13A 1156 :QITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGA T0294 179 :RFLYTGRQPR 1x13A 1190 :IVRAFDTRPE T0294 189 :PEEAAEFQAEFVS 1x13A 1201 :KEQVQSMGAEFLE T0294 203 :PELAAQSDFIVVAC 1x13A 1243 :AAQAKEVDIIVTTA T0294 218 :LTPA 1x13A 1257 :LIPG T0294 222 :TEGLCNKDFFQKMKETAVFINIS 1x13A 1263 :APKLITREMVDSMKAGSVIVDLA T0294 245 :RGDV 1x13A 1289 :GGNC T0294 277 :PTNHPLLTLKN 1x13A 1295 :TVPGEIFTTEN T0294 288 :CVILP 1x13A 1307 :VKVIG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGLRG 1x13A 1315 :LPGRLPTQSSQLYGTNLVNLLKLLCKE T0294 322 :M 1x13A 1344 :G Number of specific fragments extracted= 19 number of extra gaps= 1 total=107 Number of alignments=8 # 1x13A read from 1x13A/merged-good-all-a2m # found chain 1x13A in template set Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (1x13A)D1343 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (1x13A)D1343 T0294 22 :ALARAADCEVEQWDS 1x13A 1024 :EQLLKLGFTVAVESG T0294 39 :PIPAKELERGV 1x13A 1044 :SFDDKAFVQAG T0294 50 :AGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1x13A 1062 :SVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMD T0294 105 :DVLTDTTAELAVSLLLTTCRRL 1x13A 1127 :LDALSSMANIAGYRAIVEAAHE T0294 138 :WTS 1x13A 1149 :FGR T0294 141 :WKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS 1x13A 1153 :FTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE T0294 202 :TPELAAQSDFIVV 1x13A 1242 :FAAQAKEVDIIVT T0294 216 :CSLTPA 1x13A 1255 :TALIPG T0294 222 :TEGLCNKDFFQKMKETAVFINISR 1x13A 1263 :APKLITREMVDSMKAGSVIVDLAA T0294 247 :D 1x13A 1291 :N T0294 260 :SGKIAA 1x13A 1297 :PGEIFT T0294 277 :PTNH 1x13A 1303 :TENG T0294 281 :PL 1x13A 1314 :DL T0294 294 :IGSATHRTRNTMSLLAANNLLAGLRG 1x13A 1316 :PGRLPTQSSQLYGTNLVNLLKLLCKE T0294 322 :MPSELKL 1x13A 1344 :GNITVDF Number of specific fragments extracted= 15 number of extra gaps= 1 total=122 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1psdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1psdA expands to /projects/compbio/data/pdb/1psd.pdb.gz 1psdA:# T0294 read from 1psdA/merged-good-all-a2m # 1psdA read from 1psdA/merged-good-all-a2m # adding 1psdA to template set # found chain 1psdA in template set Warning: unaligning (T0294)P3 because first residue in template chain is (1psdA)E7 T0294 4 :VRLMKVFVTRRIPAEGRVALARA 1psdA 8 :KDKIKFLLVEGVHQKALESLRAA T0294 28 :DC 1psdA 31 :GY T0294 30 :EVEQW 1psdA 34 :NIEFH T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1psdA 39 :KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1psdA 74 :EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1psdA 144 :AGSFEARGKKLGIIGYGHIGTQLGILAESLGM T0294 179 :RFLYTGRQPRP 1psdA 176 :YVYFYDIENKL T0294 195 :FQAEFV 1psdA 189 :GNATQV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1psdA 196 :HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSD T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1psdA 280 :PLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA Number of specific fragments extracted= 10 number of extra gaps= 0 total=132 Number of alignments=10 # 1psdA read from 1psdA/merged-good-all-a2m # found chain 1psdA in template set Warning: unaligning (T0294)P3 because first residue in template chain is (1psdA)E7 T0294 4 :VRLMKVFVTRRIPAEGRVALARA 1psdA 8 :KDKIKFLLVEGVHQKALESLRAA T0294 28 :DCEVEQWD 1psdA 31 :GYTNIEFH T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1psdA 39 :KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1psdA 74 :EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1psdA 144 :AGSFEARGKKLGIIGYGHIGTQLGILAESLGM T0294 179 :RFLYTGRQPR 1psdA 176 :YVYFYDIENK T0294 189 :P 1psdA 187 :P T0294 194 :EFQAEFV 1psdA 188 :LGNATQV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1psdA 196 :HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSD T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1psdA 280 :PLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA Number of specific fragments extracted= 10 number of extra gaps= 0 total=142 Number of alignments=11 # 1psdA read from 1psdA/merged-good-all-a2m # found chain 1psdA in template set T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1psdA 20 :HQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1psdA 144 :AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1psdA 190 :NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSD T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 1psdA 280 :PLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF Number of specific fragments extracted= 4 number of extra gaps= 0 total=146 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gdhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gdhA expands to /projects/compbio/data/pdb/1gdh.pdb.gz 1gdhA:# T0294 read from 1gdhA/merged-good-all-a2m # 1gdhA read from 1gdhA/merged-good-all-a2m # adding 1gdhA to template set # found chain 1gdhA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1gdhA)K2 Warning: unaligning (T0294)E190 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0294)E191 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0294)S244 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0294)R245 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0294 7 :MKVFVTRRIPAEGRVALAR 1gdhA 3 :KKILITWPLPEAAMARARE T0294 28 :DCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1gdhA 22 :SYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM T0294 179 :RFLYTGRQP 1gdhA 172 :DIDYFDTHR T0294 188 :RP 1gdhA 182 :SS T0294 192 :AAEFQAEFV 1gdhA 186 :EASYQATFH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 1gdhA 196 :SLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNT T0294 246 :GDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1gdhA 241 :GDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEG T0294 282 :LLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1gdhA 276 :YYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYA Number of specific fragments extracted= 8 number of extra gaps= 2 total=154 Number of alignments=13 # 1gdhA read from 1gdhA/merged-good-all-a2m # found chain 1gdhA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1gdhA)K2 Warning: unaligning (T0294)E190 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0294)E191 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0294)S244 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0294)R245 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0294 7 :MKVFVTRRIPAEGRVALARA 1gdhA 3 :KKILITWPLPEAAMARARES T0294 29 :CEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1gdhA 23 :YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM T0294 179 :RFLYTGRQPR 1gdhA 172 :DIDYFDTHRA T0294 189 :P 1gdhA 183 :S T0294 192 :AAEFQAEFV 1gdhA 186 :EASYQATFH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 1gdhA 196 :SLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNT T0294 246 :GDVVNQDDLYQALASGKIAAAGLDVTSPEP 1gdhA 241 :GDLVDNELVVAALEAGRLAYAGFDVFAGEP T0294 277 :PTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1gdhA 271 :NINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYA Number of specific fragments extracted= 8 number of extra gaps= 2 total=162 Number of alignments=14 # 1gdhA read from 1gdhA/merged-good-all-a2m # found chain 1gdhA in template set Warning: unaligning (T0294)E190 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0294)E191 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0294)S244 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0294)R245 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRP 1gdhA 13 :EAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS T0294 192 :AAEF 1gdhA 186 :EASY T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 1gdhA 191 :ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNT T0294 246 :GDVVNQDDLYQALASGKIAAAGLDVTSPEPLP 1gdhA 241 :GDLVDNELVVAALEAGRLAYAGFDVFAGEPNI T0294 279 :NHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSEL 1gdhA 273 :NEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYAL Number of specific fragments extracted= 5 number of extra gaps= 2 total=167 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a9fA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2a9fA expands to /projects/compbio/data/pdb/2a9f.pdb.gz 2a9fA:# T0294 read from 2a9fA/merged-good-all-a2m # 2a9fA read from 2a9fA/merged-good-all-a2m # adding 2a9fA to template set # found chain 2a9fA in template set Warning: unaligning (T0294)R185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a9fA)D238 Warning: unaligning (T0294)P189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a9fA)D238 Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (2a9fA)A360 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (2a9fA)A360 T0294 5 :RL 2a9fA 65 :KN T0294 8 :KVFVTR 2a9fA 67 :TVAVIS T0294 14 :RIPAEG 2a9fA 82 :DIGPEA T0294 20 :RVALARAADCEVEQWDSD 2a9fA 96 :AALFKAFAGVDAIPIVLD T0294 39 :PIPAK 2a9fA 114 :TKDTE T0294 44 :ELERGVAGAHGLLCLL 2a9fA 123 :IVKALAPTFGGINLED T0294 63 :VD 2a9fA 139 :IS T0294 65 :KRILDAA 2a9fA 145 :FEIEQRL T0294 94 :KKR 2a9fA 152 :IKE T0294 97 :GIRVGY 2a9fA 156 :HIPVFH T0294 108 :TDTTAELAVSLLLTTCR 2a9fA 164 :QHGTAIVVLAAIFNSLK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTG 2a9fA 181 :LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVD T0294 190 :EEAAEF 2a9fA 239 :IAKVTN T0294 196 :QAEFVSTPELAAQSDFIVVA 2a9fA 247 :FKSGTLEDALEGADIFIGVS T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 2a9fA 267 :APGVLKAEWISKMAARPVIFAMANPIP T0294 249 :VNQDDLY 2a9fA 295 :IYPDEAL T0294 260 :SGKIAAAGLDVTSPEPLPTN 2a9fA 302 :EAGAYIVGTGRSDFPNQINN T0294 281 :PLL 2a9fA 322 :VLA T0294 284 :TLKN 2a9fA 336 :RAKT T0294 297 :AT 2a9fA 340 :IT T0294 303 :NTMSLLAANNLLAGLRG 2a9fA 342 :VEMQIAAAKGIASLVPD T0294 322 :M 2a9fA 361 :L Number of specific fragments extracted= 22 number of extra gaps= 1 total=189 Number of alignments=16 # 2a9fA read from 2a9fA/merged-good-all-a2m # found chain 2a9fA in template set Warning: unaligning (T0294)P187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2a9fA)D238 Warning: unaligning (T0294)P189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2a9fA)D238 Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (2a9fA)A360 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (2a9fA)A360 T0294 5 :RLMKVFVTR 2a9fA 66 :NTVAVISDG T0294 17 :AEGRVA 2a9fA 86 :EAAMPV T0294 23 :LARAADCEVEQWDSD 2a9fA 99 :FKAFAGVDAIPIVLD T0294 39 :PIPAKEL 2a9fA 114 :TKDTEEI T0294 46 :ERGVAGAHGLLCLL 2a9fA 125 :KALAPTFGGINLED T0294 63 :VDKRILDAA 2a9fA 139 :ISAPRCFEI T0294 90 :LDEIKKR 2a9fA 148 :EQRLIKE T0294 97 :GIRVGY 2a9fA 156 :HIPVFH T0294 108 :TDTTAELAVSLLLTTCR 2a9fA 164 :QHGTAIVVLAAIFNSLK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTG 2a9fA 181 :LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVD T0294 186 :Q 2a9fA 233 :A T0294 190 :EEAAE 2a9fA 239 :IAKVT T0294 195 :FQAEFVSTPELAAQSDFIVVA 2a9fA 246 :EFKSGTLEDALEGADIFIGVS T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 2a9fA 267 :APGVLKAEWISKMAARPVIFAMANPIP T0294 249 :VNQDDLY 2a9fA 295 :IYPDEAL T0294 260 :SGKIAAAGL 2a9fA 302 :EAGAYIVGT T0294 270 :VTSPEPLPTNHPLL 2a9fA 311 :GRSDFPNQINNVLA T0294 284 :TLKN 2a9fA 336 :RAKT T0294 297 :AT 2a9fA 340 :IT T0294 303 :NTMSLLAANNLLAGLRG 2a9fA 342 :VEMQIAAAKGIASLVPD T0294 322 :M 2a9fA 361 :L Number of specific fragments extracted= 21 number of extra gaps= 1 total=210 Number of alignments=17 # 2a9fA read from 2a9fA/merged-good-all-a2m # found chain 2a9fA in template set Warning: unaligning (T0294)E320 because of BadResidue code BAD_PEPTIDE in next template residue (2a9fA)A360 Warning: unaligning (T0294)P321 because of BadResidue code BAD_PEPTIDE at template residue (2a9fA)A360 T0294 44 :ELERGVAGAHGLLCLLSDHVDKRILD 2a9fA 96 :AALFKAFAGVDAIPIVLDTKDTEEII T0294 70 :AAGANLKVISTMSVGIDHL 2a9fA 126 :ALAPTFGGINLEDISAPRC T0294 90 :LDEIKK 2a9fA 148 :EQRLIK T0294 96 :RGIRVGY 2a9fA 155 :CHIPVFH T0294 108 :TDTTAELAVSLLLTTCR 2a9fA 164 :QHGTAIVVLAAIFNSLK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2a9fA 181 :LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGA T0294 178 :QRFLYTG 2a9fA 214 :KVTVVDK T0294 185 :RQPR 2a9fA 227 :QEAA T0294 195 :FQAEFVSTPELAAQSDFIVVACS 2a9fA 246 :EFKSGTLEDALEGADIFIGVSAP T0294 224 :GLCNKDFFQKMKETAVFINISRG 2a9fA 269 :GVLKAEWISKMAARPVIFAMANP T0294 247 :DVVNQDD 2a9fA 293 :PEIYPDE T0294 257 :AL 2a9fA 300 :AL T0294 260 :SGKIAAAGLD 2a9fA 302 :EAGAYIVGTG T0294 277 :PTNH 2a9fA 312 :RSDF T0294 283 :LTL 2a9fA 338 :KTI T0294 298 :T 2a9fA 341 :T T0294 303 :NTMSLLAANNLLAGLRG 2a9fA 342 :VEMQIAAAKGIASLVPD T0294 322 :M 2a9fA 361 :L Number of specific fragments extracted= 18 number of extra gaps= 1 total=228 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f8gA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f8gA expands to /projects/compbio/data/pdb/1f8g.pdb.gz 1f8gA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1f8gA/merged-good-all-a2m # 1f8gA read from 1f8gA/merged-good-all-a2m # adding 1f8gA to template set # found chain 1f8gA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1f8gA)M1 T0294 8 :KVFVTRR 1f8gA 2 :KIAIPKE T0294 15 :IPAEGRVALAR 1f8gA 18 :ISPEVVKKLVG T0294 27 :ADCEVEQWDS 1f8gA 29 :LGFEVIVEQG T0294 39 :PIPAKELERG 1f8gA 44 :SITDDALTAA T0294 49 :VAGAHGLLCLLSDHVDKR 1f8gA 65 :LSQADVVWKVQRPMTAEE T0294 68 :LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1f8gA 87 :VALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAME T0294 106 :VLTDTTAELAVSLLL 1f8gA 135 :DILSSQSNLAGYRAV T0294 121 :TTCRRL 1f8gA 151 :DGAYEF T0294 138 :WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1f8gA 157 :ARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGA T0294 179 :RFLYTGRQP 1f8gA 197 :VVMATDVRA T0294 188 :RPEEAAEFQAEFVS 1f8gA 207 :TKEQVESLGGKFIT T0294 204 :ELAAQSDFIVVACSLTPA 1f8gA 253 :KELVKTDIAITTALIPGK T0294 224 :GLCNKDFFQKMKETAVFINISRGDVV 1f8gA 274 :VLITEEMVTKMKPGSVIIDLAVEAGG T0294 273 :PEPLPTNHPLLTLKNCVILPH 1f8gA 300 :NCPLSEPGKIVVKHGVKIVGH T0294 294 :IGSATHR 1f8gA 324 :PSRVAAD T0294 305 :MSLLAANNLLAGL 1f8gA 331 :ASPLFAKNLLNFL Number of specific fragments extracted= 16 number of extra gaps= 0 total=244 Number of alignments=19 # 1f8gA read from 1f8gA/merged-good-all-a2m # found chain 1f8gA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1f8gA)M1 T0294 8 :KVFVTRR 1f8gA 2 :KIAIPKE T0294 15 :IPAEGRVALARA 1f8gA 18 :ISPEVVKKLVGL T0294 28 :DCEVEQWDS 1f8gA 30 :GFEVIVEQG T0294 39 :PIPAKELERG 1f8gA 44 :SITDDALTAA T0294 49 :VAGAHGLLCLLSDHVD 1f8gA 65 :LSQADVVWKVQRPMTA T0294 66 :RI 1f8gA 81 :EE T0294 68 :LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLT 1f8gA 87 :VALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPR T0294 109 :DTTAELAVSLLLTTC 1f8gA 138 :SSQSNLAGYRAVIDG T0294 134 :KNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1f8gA 153 :AYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGA T0294 179 :RFLYTGRQPR 1f8gA 197 :VVMATDVRAA T0294 189 :PEEAAEFQAEFVST 1f8gA 208 :KEQVESLGGKFITV T0294 203 :PELAAQSDFIVVACSLTPA 1f8gA 252 :LKELVKTDIAITTALIPGK T0294 222 :TE 1f8gA 273 :PV T0294 225 :LCNKDFFQKMKETAVFINIS 1f8gA 275 :LITEEMVTKMKPGSVIIDLA T0294 246 :GDV 1f8gA 299 :GNC T0294 275 :PLPTNHPLLTLKNCVILPH 1f8gA 302 :PLSEPGKIVVKHGVKIVGH T0294 294 :IGSAT 1f8gA 324 :PSRVA T0294 303 :NTMSLLAANNLLAGL 1f8gA 329 :ADASPLFAKNLLNFL Number of specific fragments extracted= 18 number of extra gaps= 0 total=262 Number of alignments=20 # 1f8gA read from 1f8gA/merged-good-all-a2m # found chain 1f8gA in template set T0294 23 :LARAADCEVEQWDS 1f8gA 25 :KLVGLGFEVIVEQG T0294 39 :PIPAKELERG 1f8gA 44 :SITDDALTAA T0294 49 :VAGAHGLLCLLSDHVDKRI 1f8gA 64 :ALSQADVVWKVQRPMTAEE T0294 68 :LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1f8gA 87 :VALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAME T0294 105 :DVLTDTTAELAVSLLLTTCRR 1f8gA 134 :MDILSSQSNLAGYRAVIDGAY T0294 136 :GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS 1f8gA 155 :EFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT T0294 202 :TPELAAQSDFIVVACSLTPA 1f8gA 251 :VLKELVKTDIAITTALIPGK T0294 225 :LCNKDFFQKMKETAVFINISRGDVV 1f8gA 275 :LITEEMVTKMKPGSVIIDLAVEAGG T0294 273 :PEPLPTNHPLLTLKNCVILPHIGSATHR 1f8gA 300 :NCPLSEPGKIVVKHGVKIVGHTNVPSRV T0294 302 :RNTMSLLAANNLLAGL 1f8gA 328 :AADASPLFAKNLLNFL Number of specific fragments extracted= 10 number of extra gaps= 0 total=272 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2go1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/2go1A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/2go1A/merged-good-all-a2m.gz for input Trying 2go1A/merged-good-all-a2m Error: Couldn't open file 2go1A/merged-good-all-a2m or 2go1A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nacA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0294 read from 2nacA/merged-good-all-a2m # 2nacA read from 2nacA/merged-good-all-a2m # found chain 2nacA in training set Warning: unaligning (T0294)I159 because of BadResidue code BAD_PEPTIDE in next template residue (2nacA)A198 Warning: unaligning (T0294)G160 because of BadResidue code BAD_PEPTIDE at template residue (2nacA)A198 T0294 21 :VALARAADCEVEQW 2nacA 60 :RKYLESNGHTLVVT T0294 36 :SDEPI 2nacA 77 :DGPDS T0294 44 :ELERGVAGAHGLLC 2nacA 82 :VFERELVDADVVIS T0294 58 :LLSDHVDKRILDAA 2nacA 98 :FWPAYLTPERIAKA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPL 2nacA 112 :KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCV T0294 146 :LCGYGLTQSTVGI 2nacA 184 :SHAYDLEAMHVGT T0294 161 :LGRIGQAIARRLKPFGV 2nacA 199 :AGRIGLAVLRRLAPFDV T0294 179 :RFLYTGRQP 2nacA 216 :HLHYTDRHR T0294 188 :RPEEAAEFQAEFV 2nacA 226 :PESVEKELNLTWH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nacA 240 :TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 10 number of extra gaps= 1 total=282 Number of alignments=22 # 2nacA read from 2nacA/merged-good-all-a2m # found chain 2nacA in training set Warning: unaligning (T0294)I159 because of BadResidue code BAD_PEPTIDE in next template residue (2nacA)A198 Warning: unaligning (T0294)G160 because of BadResidue code BAD_PEPTIDE at template residue (2nacA)A198 T0294 21 :VALARA 2nacA 61 :KYLESN T0294 28 :DCEVEQWD 2nacA 67 :GHTLVVTS T0294 36 :SDEPI 2nacA 77 :DGPDS T0294 44 :ELERGVAGAHGLLCLLSD 2nacA 82 :VFERELVDADVVISQPFW T0294 62 :HVDKRILDAA 2nacA 102 :YLTPERIAKA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPL 2nacA 112 :KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCV T0294 146 :LCGYGLTQSTVGI 2nacA 184 :SHAYDLEAMHVGT T0294 161 :LGRIGQAIARRLKPFGV 2nacA 199 :AGRIGLAVLRRLAPFDV T0294 179 :RFLYTGRQPR 2nacA 216 :HLHYTDRHRL T0294 189 :PEEAAEFQAEFV 2nacA 227 :ESVEKELNLTWH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nacA 240 :TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 11 number of extra gaps= 1 total=293 Number of alignments=23 # 2nacA read from 2nacA/merged-good-all-a2m # found chain 2nacA in training set Warning: unaligning (T0294)I159 because of BadResidue code BAD_PEPTIDE in next template residue (2nacA)A198 Warning: unaligning (T0294)G160 because of BadResidue code BAD_PEPTIDE at template residue (2nacA)A198 T0294 24 :ARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDH 2nacA 61 :KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFW T0294 63 :VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 2nacA 102 :YLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD T0294 144 :LWLCGYGLTQSTVGI 2nacA 182 :CVSHAYDLEAMHVGT T0294 161 :LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 2nacA 199 :AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nacA 235 :LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 5 number of extra gaps= 1 total=298 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d0iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d0iA expands to /projects/compbio/data/pdb/2d0i.pdb.gz 2d0iA:# T0294 read from 2d0iA/merged-good-all-a2m # 2d0iA read from 2d0iA/merged-good-all-a2m # adding 2d0iA to template set # found chain 2d0iA in template set Warning: unaligning (T0294)R5 because first residue in template chain is (2d0iA)M1 T0294 6 :LMKVFVTRRIPAEGRVALAR 2d0iA 2 :RPKVGVLLKMKREALEELKK T0294 28 :DCEVEQWD 2d0iA 22 :YADVEIIL T0294 39 :PIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 2d0iA 30 :YPSGEELKGVIGRFDGIIVSPTTKITREVLENA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPL 2d0iA 63 :ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKI T0294 146 :LCGY 2d0iA 135 :WTGF T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 2d0iA 143 :SLYGKKVGILGMGAIGKAIARRLIPFGV T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMK 2d0iA 171 :KLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE T0294 237 :TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 2d0iA 228 :GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEP T0294 277 :PTNHPLLTL 2d0iA 267 :VREHELFKY T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPS 2d0iA 277 :WETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPED Number of specific fragments extracted= 10 number of extra gaps= 0 total=308 Number of alignments=25 # 2d0iA read from 2d0iA/merged-good-all-a2m # found chain 2d0iA in template set Warning: unaligning (T0294)R5 because first residue in template chain is (2d0iA)M1 T0294 6 :LMKVFVTRRIPAEGRVALARAA 2d0iA 2 :RPKVGVLLKMKREALEELKKYA T0294 30 :EVEQWD 2d0iA 24 :DVEIIL T0294 39 :PIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 2d0iA 30 :YPSGEELKGVIGRFDGIIVSPTTKITREVLENA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLW 2d0iA 63 :ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIW T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2d0iA 139 :KRIESLYGKKVGILGMGAIGKAIARRLIPFGV T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMK 2d0iA 171 :KLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE T0294 237 :TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 2d0iA 228 :GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEP T0294 277 :PTNHPLLTL 2d0iA 267 :VREHELFKY T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPS 2d0iA 277 :WETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPED Number of specific fragments extracted= 9 number of extra gaps= 0 total=317 Number of alignments=26 # 2d0iA read from 2d0iA/merged-good-all-a2m # found chain 2d0iA in template set T0294 18 :EGRVALARAADCEVEQWDS 2d0iA 12 :KREALEELKKYADVEIILY T0294 41 :PAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLC 2d0iA 31 :PSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTG T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 2d0iA 141 :IESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVE T0294 193 :AEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKM 2d0iA 185 :KELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL T0294 236 :ETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLP 2d0iA 227 :EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR T0294 279 :NHPLLTL 2d0iA 269 :EHELFKY T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 2d0iA 277 :WETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVN Number of specific fragments extracted= 7 number of extra gaps= 0 total=324 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xwfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xwfA expands to /projects/compbio/data/pdb/1xwf.pdb.gz 1xwfA:# T0294 read from 1xwfA/merged-good-all-a2m # 1xwfA read from 1xwfA/merged-good-all-a2m # adding 1xwfA to template set # found chain 1xwfA in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1xwfA 41 :SKPLKGARIAGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGV 1xwfA 61 :VLIETLVALGAEVRWSSCNIFSTQDHAAAAI T0294 50 :AGAH 1xwfA 94 :AGIP T0294 56 :LCLLSDHVDKRILDAAG 1xwfA 98 :VFAWKGETDEEYLWCIE T0294 73 :A 1xwfA 121 :D T0294 74 :NLKVIST 1xwfA 123 :PLNMILD T0294 83 :VGIDHLAL 1xwfA 130 :DGGDLTNL T0294 92 :EIKKR 1xwfA 138 :IHTKH T0294 97 :GIRVGYTPDVLTDTTAE 1xwfA 173 :KVPAINVNDSVTNSKFD T0294 114 :LAVSLLLTTCRR 1xwfA 193 :GCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1xwfA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPRPEEAAEF 1xwfA 237 :RVIITEIDPINALQAAM T0294 196 :QAEFVSTPELAAQSDFIVVAC 1xwfA 255 :GYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1xwfA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1xwfA 305 :IDVKWLNE T0294 264 :A 1xwfA 320 :I T0294 267 :GLDVTS 1xwfA 323 :QVDRYL T0294 276 :LPTNH 1xwfA 329 :LKNGH T0294 282 :LLTLK 1xwfA 338 :LAEGR T0294 292 :PHIGSATHRTRNTMSLLAANNLL 1xwfA 351 :GHPSFVMSNSFTNQVMAQIELWT Number of specific fragments extracted= 20 number of extra gaps= 0 total=344 Number of alignments=28 # 1xwfA read from 1xwfA/merged-good-all-a2m # found chain 1xwfA in template set T0294 7 :MKVFVTR 1xwfA 71 :AEVRWSS T0294 14 :RIPAEGRVALARA 1xwfA 82 :STQDHAAAAIAKA T0294 28 :DCEVEQWD 1xwfA 95 :GIPVFAWK T0294 39 :PIPAKELERGV 1xwfA 103 :GETDEEYLWCI T0294 50 :AG 1xwfA 120 :KD T0294 52 :AHGLLCLLSD 1xwfA 124 :LNMILDDGGD T0294 64 :DKRIL 1xwfA 142 :HPQLL T0294 73 :ANLKVISTMS 1xwfA 147 :SGIRGISEET T0294 90 :LDEIKKR 1xwfA 160 :VHNLYKM T0294 97 :GIRVGYTPDVLTDTTAEL 1xwfA 173 :KVPAINVNDSVTNSKFDN T0294 115 :AVSLLLTTCRR 1xwfA 194 :CRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1xwfA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPR 1xwfA 237 :RVIITEIDPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVAC 1xwfA 248 :ALQAAMEGYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1xwfA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1xwfA 305 :IDVKWLNE Number of specific fragments extracted= 16 number of extra gaps= 0 total=360 Number of alignments=29 # 1xwfA read from 1xwfA/merged-good-all-a2m # found chain 1xwfA in template set T0294 34 :WDSDEPIPAKELERGV 1xwfA 98 :VFAWKGETDEEYLWCI T0294 50 :AGAHGLLCLLSDHVDKRIL 1xwfA 120 :KDGPLNMILDDGGDLTNLI T0294 69 :DAAGANLKVISTMS 1xwfA 143 :PQLLSGIRGISEET T0294 90 :LDEIKK 1xwfA 160 :VHNLYK T0294 96 :RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 1xwfA 172 :LKVPAINVNDSVTNSKFDNLYGCRESLIDGIKRAT T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP 1xwfA 207 :DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVD T0294 225 :LCNKDFFQKMKETAVFINISRGDV 1xwfA 280 :IILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1xwfA 305 :IDVKWLNE Number of specific fragments extracted= 8 number of extra gaps= 0 total=368 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gtmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gtmA expands to /projects/compbio/data/pdb/1gtm.pdb.gz 1gtmA:# T0294 read from 1gtmA/merged-good-all-a2m # 1gtmA read from 1gtmA/merged-good-all-a2m # adding 1gtmA to template set # found chain 1gtmA in template set Warning: unaligning (T0294)K173 because of BadResidue code BAD_PEPTIDE in next template residue (1gtmA)D234 Warning: unaligning (T0294)P174 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)D234 Warning: unaligning (T0294)L258 because of BadResidue code BAD_PEPTIDE in next template residue (1gtmA)E332 Warning: unaligning (T0294)A259 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)E332 T0294 14 :RIPAEGRVALARA 1gtmA 113 :KLSDREKERLARG T0294 45 :LERGVAG 1gtmA 126 :YIRAIYD T0294 56 :LCLLSDHVDKRILDAA 1gtmA 140 :IPAPDVYTNPQIMAWM T0294 90 :LDEIKKR 1gtmA 156 :MDEYETI T0294 104 :PDVLTDTTAELAVSLLLTTCR 1gtmA 183 :SLGRIEATARGASYTIREAAK T0294 146 :LCGY 1gtmA 204 :VLGW T0294 150 :GLTQSTVGIIGLGRIGQAIARRL 1gtmA 209 :TLKGKTIAIQGYGNAGYYLAKIM T0294 175 :FGV 1gtmA 235 :FGM T0294 179 :RFLYTGRQP 1gtmA 238 :KVVAVSDSK T0294 188 :RPEEAAE 1gtmA 256 :NADEVLK T0294 195 :FQAEFVSTPELAA 1gtmA 274 :PGATNITNEELLE T0294 209 :SDFIVVAC 1gtmA 289 :VDVLAPAA T0294 217 :SLTPATEGLCN 1gtmA 300 :VITKKNADNIK T0294 238 :AVFINISRGDVVNQDDLYQA 1gtmA 311 :AKIVAEVANGPVTPEADEIL T0294 260 :SGKIA 1gtmA 333 :KGILQ T0294 275 :PLPT 1gtmA 362 :YYWT T0294 298 :THRTRNTMSLL 1gtmA 366 :IEEVRERLDKK T0294 309 :AANNLLAGL 1gtmA 380 :AFYDVYNIA Number of specific fragments extracted= 18 number of extra gaps= 2 total=386 Number of alignments=31 # 1gtmA read from 1gtmA/merged-good-all-a2m # found chain 1gtmA in template set Warning: unaligning (T0294)K173 because of BadResidue code BAD_PEPTIDE in next template residue (1gtmA)D234 Warning: unaligning (T0294)P174 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)D234 Warning: unaligning (T0294)L258 because of BadResidue code BAD_PEPTIDE in next template residue (1gtmA)E332 Warning: unaligning (T0294)A259 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)E332 T0294 98 :IRVGYTPDVLTDTTAELAVSLLLTTCR 1gtmA 69 :GGIRWHPEETLSTVKALAAWMTWKTAV T0294 125 :RLP 1gtmA 97 :DLP T0294 146 :L 1gtmA 100 :Y T0294 151 :LTQSTVGIIGLGRIGQAIARRL 1gtmA 210 :LKGKTIAIQGYGNAGYYLAKIM T0294 175 :FGV 1gtmA 235 :FGM T0294 179 :RFLYTGRQP 1gtmA 238 :KVVAVSDSK T0294 188 :RPEEA 1gtmA 256 :NADEV T0294 195 :FQAEFVSTPELAA 1gtmA 274 :PGATNITNEELLE T0294 209 :SDFIVVAC 1gtmA 289 :VDVLAPAA T0294 217 :SLTPATEGLCN 1gtmA 300 :VITKKNADNIK T0294 238 :AVFINISRGDVVNQDDLYQA 1gtmA 311 :AKIVAEVANGPVTPEADEIL T0294 260 :SGK 1gtmA 333 :KGI T0294 289 :VILP 1gtmA 336 :LQIP T0294 293 :HIGSAT 1gtmA 344 :NAGGVT T0294 299 :HRTRNTMSLL 1gtmA 367 :EEVRERLDKK T0294 309 :AANNLLAGL 1gtmA 380 :AFYDVYNIA Number of specific fragments extracted= 16 number of extra gaps= 2 total=402 Number of alignments=32 # 1gtmA read from 1gtmA/merged-good-all-a2m # found chain 1gtmA in template set Warning: unaligning (T0294)P174 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)D234 Warning: unaligning (T0294)L258 because of BadResidue code BAD_PEPTIDE in next template residue (1gtmA)E332 Warning: unaligning (T0294)A259 because of BadResidue code BAD_PEPTIDE at template residue (1gtmA)E332 T0294 107 :LTDTTAELAVSLLLTTCRR 1gtmA 186 :RIEATARGASYTIREAAKV T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLK 1gtmA 205 :LGWDTLKGKTIAIQGYGNAGYYLAKIMS T0294 175 :FGVQRFLYTGRQP 1gtmA 235 :FGMKVVAVSDSKG T0294 188 :RPEE 1gtmA 256 :NADE T0294 193 :AEFQAEFVSTPELAA 1gtmA 272 :DFPGATNITNEELLE T0294 209 :SDFIVVAC 1gtmA 289 :VDVLAPAA T0294 217 :SLTPATEGLCN 1gtmA 300 :VITKKNADNIK T0294 238 :AVFINISRGDVVNQDDLYQA 1gtmA 311 :AKIVAEVANGPVTPEADEIL T0294 260 :SGKIA 1gtmA 333 :KGILQ T0294 281 :PLLT 1gtmA 362 :YYWT T0294 298 :THRTRNTMSLL 1gtmA 366 :IEEVRERLDKK T0294 309 :AANNLLAGL 1gtmA 380 :AFYDVYNIA Number of specific fragments extracted= 12 number of extra gaps= 2 total=414 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gpjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gpjA expands to /projects/compbio/data/pdb/1gpj.pdb.gz 1gpjA:Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 118, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 120, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 122, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 994, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1065, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1067, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1069, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1071, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1073, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1075, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1077, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1079, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1485, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1493, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1495, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1497, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1763, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1765, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1767, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1769, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1771, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1773, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1775, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1777, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2001, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2007, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2009, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2036, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2038, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2040, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2042, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2044, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2046, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2048, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2230, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2232, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2234, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2236, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2238, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2240, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2242, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2244, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2246, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2585, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2587, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2589, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2591, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2593, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2595, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2597, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2599, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2601, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2675, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2677, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2679, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2681, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2683, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2685, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2687, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2689, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2691, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2693, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2695, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2770, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2772, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2774, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2776, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2778, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2780, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2782, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2784, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2786, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2824, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2826, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2828, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2830, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2832, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2834, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2836, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2838, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2840, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3007, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3009, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3011, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3013, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3015, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3017, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3019, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3021, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3023, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3118, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3120, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3122, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3124, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3126, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3128, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3130, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3132, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3202, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3204, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3206, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3208, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3210, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3212, because occupancy 0.500 <= existing 0.500 in 1gpjA # T0294 read from 1gpjA/merged-good-all-a2m # 1gpjA read from 1gpjA/merged-good-all-a2m # adding 1gpjA to template set # found chain 1gpjA in template set Warning: unaligning (T0294)D35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1gpjA)R59 Warning: unaligning (T0294)S36 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)R59 T0294 14 :RIPAEGRVALARAADCEVEQW 1gpjA 24 :FESDEAVRDIVESFGLSGSVL T0294 37 :D 1gpjA 60 :D T0294 41 :PAKELERGV 1gpjA 61 :RAEELGDLI T0294 50 :AGA 1gpjA 71 :DDA T0294 59 :LSDHVDKRILDAAGA 1gpjA 94 :SMMVGEQEILRQVKK T0294 90 :LDEIKKRGIR 1gpjA 110 :YDRAARLGTL T0294 109 :DTTAELAVSLLLTTCRR 1gpjA 120 :DEALKIVFRRAINLGKR T0294 133 :VKN 1gpjA 137 :ARE T0294 136 :GGWTSWKPLW 1gpjA 141 :TRISEGAVSI T0294 146 :LC 1gpjA 161 :EL T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 1gpjA 163 :GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT T0294 189 :PEEAAEF 1gpjA 201 :YERAVEL T0294 196 :QAEFVSTPEL 1gpjA 212 :GGEAVRFDEL T0294 206 :AAQSDFIVVA 1gpjA 225 :LARSDVVVSA T0294 219 :TPATEGLCNKDFFQKM 1gpjA 235 :TAAPHPVIHVDDVREA T0294 235 :KETAVFINISRGDVVN 1gpjA 257 :RSPILIIDIANPRDVE T0294 251 :QDDLYQALAS 1gpjA 286 :IDDLRVIARE T0294 298 :THRTRNTMSLLAANNLLAGL 1gpjA 307 :VEKLIEEELSTVEEELEKLK Number of specific fragments extracted= 18 number of extra gaps= 1 total=432 Number of alignments=34 # 1gpjA read from 1gpjA/merged-good-all-a2m # found chain 1gpjA in template set Warning: unaligning (T0294)P39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)R59 T0294 16 :PAEGRVALARAADC 1gpjA 26 :SDEAVRDIVESFGL T0294 30 :EVEQWDSDE 1gpjA 41 :GSVLLQTSN T0294 40 :IPAKELERGV 1gpjA 60 :DRAEELGDLI T0294 50 :AGAH 1gpjA 71 :DDAW T0294 59 :LSDHVDKRILDAAGA 1gpjA 94 :SMMVGEQEILRQVKK T0294 90 :LDEIKKRGI 1gpjA 110 :YDRAARLGT T0294 108 :TDTTAELAVSLLLTTCR 1gpjA 119 :LDEALKIVFRRAINLGK T0294 132 :EVKNG 1gpjA 136 :RAREE T0294 142 :KPLWLCGYG 1gpjA 141 :TRISEGAVS T0294 151 :LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 1gpjA 165 :LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE T0294 189 :PEEAAEFQAEFVSTPEL 1gpjA 205 :VELARDLGGEAVRFDEL T0294 206 :AAQSDFIVVAC 1gpjA 225 :LARSDVVVSAT T0294 220 :PATEGLCNKDFFQKM 1gpjA 236 :AAPHPVIHVDDVREA T0294 235 :KETAVFINISRGDVVN 1gpjA 257 :RSPILIIDIANPRDVE T0294 251 :QDDLYQALASG 1gpjA 286 :IDDLRVIAREN T0294 298 :THRTRNTMSLLAANNLLAGL 1gpjA 307 :VEKLIEEELSTVEEELEKLK Number of specific fragments extracted= 16 number of extra gaps= 1 total=448 Number of alignments=35 # 1gpjA read from 1gpjA/merged-good-all-a2m # found chain 1gpjA in template set T0294 90 :LDEIKKRGIR 1gpjA 110 :YDRAARLGTL T0294 108 :TD 1gpjA 120 :DE T0294 118 :LLLTTCRRLPEAIEEVKN 1gpjA 122 :ALKIVFRRAINLGKRARE T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1gpjA 162 :LGSLHDKTVLVVGAGEMGKTVAKSLVDRGV T0294 178 :QRFLYTGRQPR 1gpjA 193 :AVLVANRTYER T0294 192 :AAEFQAEFVSTPEL 1gpjA 208 :ARDLGGEAVRFDEL T0294 206 :AAQSDFIVVA 1gpjA 225 :LARSDVVVSA T0294 219 :TPATEGLCNKDFFQKM 1gpjA 235 :TAAPHPVIHVDDVREA T0294 235 :KETAVFINISRGDVV 1gpjA 257 :RSPILIIDIANPRDV T0294 279 :NHPLLTLKNCVILP 1gpjA 272 :EEGVENIEDVEVRT T0294 298 :THRTRNTMSLLAANNLLAGL 1gpjA 307 :VEKLIEEELSTVEEELEKLK Number of specific fragments extracted= 11 number of extra gaps= 0 total=459 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dxy/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dxy expands to /projects/compbio/data/pdb/1dxy.pdb.gz 1dxy:Warning: there is no chain 1dxy will retry with 1dxyA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1214, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1216, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 1dxy Skipped atom 1220, because occupancy 0.500 <= existing 0.500 in 1dxy # T0294 read from 1dxy/merged-good-all-a2m # 1dxy read from 1dxy/merged-good-all-a2m # adding 1dxy to template set # found chain 1dxy in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1dxy)M1 T0294 8 :KVFVTRRIP 1dxy 2 :KIIAYGARV T0294 17 :AEGRVALARAADCEVEQW 1dxy 13 :IQYFKQWAKDTGNTLEYH T0294 37 :DEPIPAKEL 1dxy 31 :TEFLDENTV T0294 47 :RGVAGAHGLLCLLSDHVDKRILDAAGA 1dxy 40 :EWAKGFDGINSLQTTPYAAGVFEKMHA T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP 1dxy 68 :GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1dxy 138 :FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA T0294 179 :RFLYTGRQPRP 1dxy 170 :KVIAYDPYPMK T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1dxy 185 :DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE T0294 282 :LLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 1dxy 284 :LLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG Number of specific fragments extracted= 9 number of extra gaps= 0 total=468 Number of alignments=37 # 1dxy read from 1dxy/merged-good-all-a2m # found chain 1dxy in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1dxy)M1 T0294 8 :KVFVTRRIP 1dxy 2 :KIIAYGARV T0294 17 :AEGRVALARAADCEVEQWD 1dxy 13 :IQYFKQWAKDTGNTLEYHT T0294 38 :EPIPAKEL 1dxy 32 :EFLDENTV T0294 47 :RGVAGAHGLLCLLSDHVDKRILDAAGA 1dxy 40 :EWAKGFDGINSLQTTPYAAGVFEKMHA T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP 1dxy 68 :GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1dxy 138 :FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA T0294 179 :RFLYTGRQPRPEEA 1dxy 170 :KVIAYDPYPMKGDH T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1dxy 184 :PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 1dxy 283 :ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG Number of specific fragments extracted= 9 number of extra gaps= 0 total=477 Number of alignments=38 # 1dxy read from 1dxy/merged-good-all-a2m # found chain 1dxy in template set T0294 19 :GRVALARAADCEVEQWDSDEPIPAKEL 1dxy 13 :IQYFKQWAKDTGNTLEYHTEFLDENTV T0294 48 :GVAGAHGLLCLLSDHVDKRILDAAG 1dxy 40 :EWAKGFDGINSLQTTPYAAGVFEKM T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1dxy 67 :YGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG T0294 145 :WLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1dxy 137 :TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1dxy 184 :PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 1dxy 283 :ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVT Number of specific fragments extracted= 6 number of extra gaps= 0 total=483 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j49A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/1j49A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/1j49A/merged-good-all-a2m.gz for input Trying 1j49A/merged-good-all-a2m Error: Couldn't open file 1j49A/merged-good-all-a2m or 1j49A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wxdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wxdA expands to /projects/compbio/data/pdb/1wxd.pdb.gz 1wxdA:# T0294 read from 1wxdA/merged-good-all-a2m # 1wxdA read from 1wxdA/merged-good-all-a2m # adding 1wxdA to template set # found chain 1wxdA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1wxdA)M1 T0294 7 :MKV 1wxdA 2 :LRF T0294 10 :FVTRRIP 1wxdA 6 :VLGHPVA T0294 17 :AEGRVALARAADC 1wxdA 17 :PAMHAFALESLGL T0294 30 :EVEQWDS 1wxdA 32 :SYEAWDT T0294 41 :PAKEL 1wxdA 39 :PLEAL T0294 65 :KRILDAAGANLKVISTMS 1wxdA 44 :PGRLKEVRRAFRGVNLTL T0294 83 :VGIDHL 1wxdA 69 :AHLDWV T0294 90 :LDEIKKR 1wxdA 75 :SPEAQRI T0294 100 :VGYT 1wxdA 96 :GFNT T0294 115 :AVSLLLTTCR 1wxdA 100 :DAPGFLEALK T0294 146 :LCGYGLTQ 1wxdA 110 :AGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 1wxdA 118 :PALVLGAGGAGRAVAFALREAGL T0294 179 :RFLYTGRQPRP 1wxdA 141 :EVWVWNRTPQR T0294 190 :EEAAEFQAEFVSTPE 1wxdA 154 :ALAEEFGLRAVPLEK T0294 206 :AAQSDFIVVACSLTPA 1wxdA 169 :AREARLLVNATRVGLE T0294 222 :TEGLCNKDF 1wxdA 187 :SASPLPAEL T0294 234 :MKETAVFINISRGDVVN 1wxdA 196 :FPEEGAAVDLVYRPLWT T0294 253 :DLYQALASGKIAA 1wxdA 213 :RFLREAKAKGLKV T0294 271 :TSP 1wxdA 226 :QTG T0294 303 :NTMSLLAANNLLAGLRGEPMP 1wxdA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 20 number of extra gaps= 0 total=503 Number of alignments=40 # 1wxdA read from 1wxdA/merged-good-all-a2m # found chain 1wxdA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1wxdA)M1 T0294 7 :MKVFVTRRIP 1wxdA 2 :LRFAVLGHPV T0294 17 :AEGRVALARAADC 1wxdA 17 :PAMHAFALESLGL T0294 30 :EVEQWD 1wxdA 32 :SYEAWD T0294 40 :IPAKEL 1wxdA 38 :TPLEAL T0294 65 :KRILDAAGANLKVISTMS 1wxdA 44 :PGRLKEVRRAFRGVNLTL T0294 83 :VGIDHLA 1wxdA 66 :AALAHLD T0294 90 :LDEIKKRGI 1wxdA 75 :SPEAQRIGA T0294 106 :VLTDTTAELA 1wxdA 98 :NTDAPGFLEA T0294 133 :VKNGGWTSWK 1wxdA 108 :LKAGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 1wxdA 118 :PALVLGAGGAGRAVAFALREAGL T0294 179 :RFLYTGRQPR 1wxdA 141 :EVWVWNRTPQ T0294 189 :PEEAAEFQAEFVSTPE 1wxdA 153 :LALAEEFGLRAVPLEK T0294 206 :AAQSDFIVVACSLTPA 1wxdA 169 :AREARLLVNATRVGLE T0294 222 :TEGLCNKDF 1wxdA 187 :SASPLPAEL T0294 234 :MKETAVFINISRGDVVN 1wxdA 196 :FPEEGAAVDLVYRPLWT T0294 253 :DLYQALASGKIAA 1wxdA 213 :RFLREAKAKGLKV T0294 271 :TSP 1wxdA 226 :QTG T0294 303 :NTMSLLAANNLLAGLRGEPMP 1wxdA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 18 number of extra gaps= 0 total=521 Number of alignments=41 # 1wxdA read from 1wxdA/merged-good-all-a2m # found chain 1wxdA in template set T0294 24 :ARAADCEVEQWDSDEPIPAKELERGVA 1wxdA 26 :SLGLEGSYEAWDTPLEALPGRLKEVRR T0294 52 :AHGLLCLLSDHVD 1wxdA 53 :AFRGVNLTLPLKE T0294 70 :AAGAN 1wxdA 66 :AALAH T0294 85 :IDHL 1wxdA 71 :LDWV T0294 90 :LDEIKKRGIR 1wxdA 75 :SPEAQRIGAV T0294 105 :DVLTDTTAEL 1wxdA 98 :NTDAPGFLEA T0294 133 :VKNGGWTSWK 1wxdA 108 :LKAGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1wxdA 118 :PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALA T0294 192 :AAEFQAEFVSTPE 1wxdA 156 :AEEFGLRAVPLEK T0294 206 :AAQSDFIVVACSLTPA 1wxdA 169 :AREARLLVNATRVGLE T0294 222 :TEGLCNKD 1wxdA 187 :SASPLPAE T0294 233 :KMKETAVFINISRGDVVNQ 1wxdA 195 :LFPEEGAAVDLVYRPLWTR T0294 254 :LYQALASGKIAA 1wxdA 214 :FLREAKAKGLKV T0294 289 :V 1wxdA 226 :Q T0294 303 :NTMSLLAANNLLAGLRGEPMP 1wxdA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 15 number of extra gaps= 0 total=536 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0294 read from 1vpdA/merged-good-all-a2m # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0294)S154 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0294)A197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0294)E198 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 T0294 156 :VGIIGLGRIGQAIARRLKPFGV 1vpdA 5 :VGFIGLGIMGKPMSKNLLKAGY T0294 179 :RFLYTGR 1vpdA 27 :SLVVSDR T0294 188 :RPEEAAEF 1vpdA 34 :NPEAIADV T0294 196 :Q 1vpdA 45 :G T0294 199 :FV 1vpdA 48 :TA T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKD 1vpdA 51 :TAKAIAEQCDVIITMLPNSPHVKEVALGE T0294 230 :FFQKMKETAVFINISR 1vpdA 82 :IIEGAKPGTVLIDMSS T0294 249 :VNQDDLYQA 1vpdA 98 :IAPLASREI T0294 258 :LASGKIA 1vpdA 110 :LKAKGVE T0294 267 :GLDVTSPE 1vpdA 117 :MLDAPVSG T0294 286 :KNCVILPHIGSATHRTRNTMSLLAA 1vpdA 157 :GSVVHTGDIGAGNVTKLANQVIVAL T0294 312 :NLLAGL 1vpdA 182 :NIAAMS Number of specific fragments extracted= 12 number of extra gaps= 1 total=548 Number of alignments=43 # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0294)S154 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0294)A197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0294)E198 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 T0294 156 :VGIIGLGRIGQAIARRLKPFGV 1vpdA 5 :VGFIGLGIMGKPMSKNLLKAGY T0294 179 :RFLYTGRQPR 1vpdA 27 :SLVVSDRNPE T0294 189 :PEEAAEFQ 1vpdA 38 :IADVIAAG T0294 199 :FV 1vpdA 48 :TA T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKD 1vpdA 51 :TAKAIAEQCDVIITMLPNSPHVKEVALGE T0294 230 :FFQKMKETAVFINISR 1vpdA 82 :IIEGAKPGTVLIDMSS T0294 249 :VNQDDLYQA 1vpdA 98 :IAPLASREI T0294 258 :LASGKIAAAGLDVTSPE 1vpdA 110 :LKAKGVEMLDAPVSGGE T0294 286 :KNCVILPHIGSATHRTRNTMSLLAA 1vpdA 157 :GSVVHTGDIGAGNVTKLANQVIVAL T0294 312 :NLLAGL 1vpdA 182 :NIAAMS Number of specific fragments extracted= 10 number of extra gaps= 1 total=558 Number of alignments=44 # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0294)S154 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0294)Q196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0294)A197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 T0294 156 :VGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 1vpdA 5 :VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP T0294 190 :EE 1vpdA 36 :EA T0294 192 :AAEF 1vpdA 42 :IAAG T0294 198 :EFVSTPELAAQSDFIVVACSLTPATEGLCNKD 1vpdA 48 :TASTAKAIAEQCDVIITMLPNSPHVKEVALGE T0294 230 :FFQKMKETAVFINISR 1vpdA 82 :IIEGAKPGTVLIDMSS T0294 249 :VNQDD 1vpdA 98 :IAPLA T0294 254 :LYQALASGKIAAAGLDVTS 1vpdA 106 :ISDALKAKGVEMLDAPVSG T0294 286 :KNCVILPHIGSATHRTRNTMSLLAA 1vpdA 157 :GSVVHTGDIGAGNVTKLANQVIVAL T0294 312 :NLLAGL 1vpdA 182 :NIAAMS Number of specific fragments extracted= 9 number of extra gaps= 1 total=567 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b3rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b3rA expands to /projects/compbio/data/pdb/1b3r.pdb.gz 1b3rA:# T0294 read from 1b3rA/merged-good-all-a2m # 1b3rA read from 1b3rA/merged-good-all-a2m # adding 1b3rA to template set # found chain 1b3rA in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1b3rA 41 :SKPLKGARIAGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGV 1b3rA 61 :VLIETLVALGAEVRWSSCNIFSTQDHAAAAI T0294 50 :AGAHG 1b3rA 94 :AGIPV T0294 57 :CLLSDHVDKRILDAAG 1b3rA 99 :FAWKGETDEEYLWCIE T0294 74 :NLKVIS 1b3rA 123 :PLNMIL T0294 82 :SVGIDHLAL 1b3rA 129 :DDGGDLTNL T0294 92 :EIKKR 1b3rA 138 :IHTKH T0294 97 :GIRVGYTPDVLTDTTAE 1b3rA 173 :KVPAINVNDSVTKSKFD T0294 114 :LAVSLLLTTCRR 1b3rA 193 :GCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1b3rA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPRPEEAAEF 1b3rA 237 :RVIITEIDPINALQAAM T0294 196 :QAEFVSTPELAAQSDFIVVAC 1b3rA 255 :GYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1b3rA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1b3rA 305 :IDVKWLNE T0294 264 :AAAGLDVTSP 1b3rA 320 :IKPQVDRYLL T0294 277 :PTNH 1b3rA 330 :KNGH T0294 282 :LLTLK 1b3rA 338 :LAEGR T0294 292 :PHIGSATH 1b3rA 351 :GHPSFVMS T0294 303 :NTMSLLAANNLLAGLRGEPMPSELK 1b3rA 359 :NSFTNQVMAQIELWTHPDKYPVGVH Number of specific fragments extracted= 19 number of extra gaps= 0 total=586 Number of alignments=46 # 1b3rA read from 1b3rA/merged-good-all-a2m # found chain 1b3rA in template set T0294 7 :MKVFVTR 1b3rA 71 :AEVRWSS T0294 14 :RIPAEGRVALARA 1b3rA 82 :STQDHAAAAIAKA T0294 28 :DCEVEQWD 1b3rA 95 :GIPVFAWK T0294 39 :PIPAKELERGV 1b3rA 103 :GETDEEYLWCI T0294 50 :AG 1b3rA 120 :KD T0294 52 :AHGLLCLLS 1b3rA 124 :LNMILDDGG T0294 64 :DKRIL 1b3rA 142 :HPQLL T0294 73 :ANLKVISTMS 1b3rA 147 :SGIRGISEET T0294 90 :LDEIKKR 1b3rA 160 :VHNLYKM T0294 98 :IRVGYTPDVLTDTTAE 1b3rA 174 :VPAINVNDSVTKSKFD T0294 114 :LAVSLLLTTCRR 1b3rA 193 :GCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1b3rA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPR 1b3rA 237 :RVIITEIDPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVAC 1b3rA 248 :ALQAAMEGYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1b3rA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1b3rA 305 :IDVKWLNE Number of specific fragments extracted= 16 number of extra gaps= 0 total=602 Number of alignments=47 # 1b3rA read from 1b3rA/merged-good-all-a2m # found chain 1b3rA in template set T0294 34 :WDSDEPIPAKELERGV 1b3rA 98 :VFAWKGETDEEYLWCI T0294 50 :AGAHGLLCLLSDHVDKRIL 1b3rA 120 :KDGPLNMILDDGGDLTNLI T0294 69 :DAAGANLKVISTMS 1b3rA 143 :PQLLSGIRGISEET T0294 90 :LDEIKK 1b3rA 160 :VHNLYK T0294 96 :RG 1b3rA 169 :NG T0294 98 :IRVGYTPDVLT 1b3rA 174 :VPAINVNDSVT T0294 109 :DTTAELAVSLLLTTC 1b3rA 192 :YGCRESLIDGIKRAT T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSL 1b3rA 207 :DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGC T0294 223 :EGLCNKDFFQKMKETAVFINISRGD 1b3rA 278 :VDIILGRHFEQMKDDAIVCNIGHFD T0294 248 :VVNQDDLYQ 1b3rA 304 :EIDVKWLNE Number of specific fragments extracted= 10 number of extra gaps= 0 total=612 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mx3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mx3A expands to /projects/compbio/data/pdb/1mx3.pdb.gz 1mx3A:# T0294 read from 1mx3A/merged-good-all-a2m # 1mx3A read from 1mx3A/merged-good-all-a2m # adding 1mx3A to template set # found chain 1mx3A in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1mx3A)M27 Warning: unaligning (T0294)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1mx3A)V200 Warning: unaligning (T0294)F180 because of BadResidue code BAD_PEPTIDE at template residue (1mx3A)V200 T0294 7 :MKVFVTRRIPAEGRVALARAA 1mx3A 28 :PLVALLDGRDCTVEMPILKDV T0294 29 :CEVEQWDSDE 1mx3A 49 :ATVAFCDAQS T0294 39 :PIP 1mx3A 61 :EIH T0294 43 :KELER 1mx3A 64 :EKVLN T0294 51 :GAHGLLCLLSDHVDKRILDAA 1mx3A 69 :EAVGALMYHTITLTREDLEKF T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNG 1mx3A 90 :KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREG T0294 137 :GWTSWKPLW 1mx3A 155 :RVQSVEQIR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1mx3A 167 :SGAARIRGETLGIIGLGRVGQAVALRAKAFGF T0294 181 :LYTGRQPRPEEAAEFQAEFV 1mx3A 201 :LFYDPYLSDGVERALGLQRV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1mx3A 222 :TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPS 1mx3A 303 :PLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDS Number of specific fragments extracted= 11 number of extra gaps= 1 total=623 Number of alignments=49 # 1mx3A read from 1mx3A/merged-good-all-a2m # found chain 1mx3A in template set Warning: unaligning (T0294)L6 because first residue in template chain is (1mx3A)M27 Warning: unaligning (T0294)R179 because of BadResidue code BAD_PEPTIDE in next template residue (1mx3A)V200 Warning: unaligning (T0294)F180 because of BadResidue code BAD_PEPTIDE at template residue (1mx3A)V200 T0294 7 :MKVFVTRRIP 1mx3A 28 :PLVALLDGRD T0294 17 :AEGRVALARA 1mx3A 39 :TVEMPILKDV T0294 29 :CEVEQWDSDE 1mx3A 49 :ATVAFCDAQS T0294 39 :PIPAKELER 1mx3A 61 :EIHEKVLNE T0294 52 :AHGLLCLLSDHVDKRILDAA 1mx3A 70 :AVGALMYHTITLTREDLEKF T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNG 1mx3A 90 :KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREG T0294 138 :WTSWKP 1mx3A 154 :TRVQSV T0294 144 :LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1mx3A 165 :VASGAARIRGETLGIIGLGRVGQAVALRAKAFGF T0294 181 :LYTGRQPRPEEAAEFQAEFV 1mx3A 201 :LFYDPYLSDGVERALGLQRV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1mx3A 222 :TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPS 1mx3A 303 :PLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDS Number of specific fragments extracted= 11 number of extra gaps= 1 total=634 Number of alignments=50 # 1mx3A read from 1mx3A/merged-good-all-a2m # found chain 1mx3A in template set Warning: unaligning (T0294)Q178 because of BadResidue code BAD_PEPTIDE in next template residue (1mx3A)V200 Warning: unaligning (T0294)R179 because of BadResidue code BAD_PEPTIDE at template residue (1mx3A)V200 T0294 25 :RAADCEVEQWDSDE 1mx3A 45 :LKDVATVAFCDAQS T0294 39 :PIPAKELER 1mx3A 61 :EIHEKVLNE T0294 53 :HGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLP 1mx3A 70 :AVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRAT T0294 129 :AIEEVKNGGWTSWKP 1mx3A 145 :WLHQALREGTRVQSV T0294 144 :LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1mx3A 165 :VASGAARIRGETLGIIGLGRVGQAVALRAKAFGF T0294 180 :FLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1mx3A 201 :LFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ T0294 281 :PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGE 1mx3A 303 :PLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGR Number of specific fragments extracted= 7 number of extra gaps= 1 total=641 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dldA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2dldA expands to /projects/compbio/data/pdb/2dld.pdb.gz 2dldA:# T0294 read from 2dldA/merged-good-all-a2m # 2dldA read from 2dldA/merged-good-all-a2m # adding 2dldA to template set # found chain 2dldA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2dldA)M1 Warning: unaligning (T0294)A27 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)K25 Warning: unaligning (T0294)S82 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)V79 Warning: unaligning (T0294)V83 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)V79 Warning: unaligning (T0294)A115 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)A112 Warning: unaligning (T0294)V116 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)A112 Warning: unaligning (T0294)L282 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)P279 Warning: unaligning (T0294)L283 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)P279 Warning: unaligning (T0294)S296 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)Y301 Warning: unaligning (T0294)L317 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)N322 Warning: unaligning (T0294)R318 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)N322 T0294 7 :MKVFVTRRIP 2dldA 2 :TKVFAYAIRK T0294 17 :AEGRVALARA 2dldA 14 :EPFLNEWKEA T0294 28 :DCEVEQW 2dldA 26 :DIDVDYT T0294 37 :DEPIPAKE 2dldA 33 :DKLLTPET T0294 46 :ERGVAGAHGLLCLLSDHVDKRILDAAGA 2dldA 41 :AKLAKGADGVVVYQQLDYTADTLQALAD T0294 74 :NLKVISTM 2dldA 70 :GVTKMSLR T0294 84 :GIDHLALDEIKKRGIRVGYTPDVLTDTTAEL 2dldA 80 :GVDNIDMDKAKELGFQITNVPVYSPNAIAEH T0294 117 :SLLLTTCRRLPEAIEEVKNGGWTSWK 2dldA 113 :IQAARVLRQDKRMDEKMAKRDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2dldA 139 :TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGA T0294 179 :RFLYTGRQPRPEEAAE 2dldA 171 :KVIAYDIFKNPELEKK T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 2dldA 187 :GYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE T0294 275 :PLPTNHP 2dldA 271 :KDWEGKE T0294 284 :T 2dldA 280 :D T0294 285 :LKNCVILPHIG 2dldA 289 :RPNVLVTPHTA T0294 298 :THRTRNTMSLLAANNLLAG 2dldA 302 :TTHAVRNMVVKAFNNNLKL T0294 319 :GEPMPSE 2dldA 323 :GEKPDSP Number of specific fragments extracted= 16 number of extra gaps= 6 total=657 Number of alignments=52 # 2dldA read from 2dldA/merged-good-all-a2m # found chain 2dldA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2dldA)M1 Warning: unaligning (T0294)A27 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)K25 Warning: unaligning (T0294)S82 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)V79 Warning: unaligning (T0294)V83 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)V79 Warning: unaligning (T0294)A115 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)A112 Warning: unaligning (T0294)V116 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)A112 Warning: unaligning (T0294)L282 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)P279 Warning: unaligning (T0294)L283 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)P279 Warning: unaligning (T0294)S296 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)Y301 Warning: unaligning (T0294)L317 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)N322 Warning: unaligning (T0294)R318 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)N322 T0294 7 :MKVFVTR 2dldA 2 :TKVFAYA T0294 15 :IP 2dldA 9 :IR T0294 17 :AEGRVALARA 2dldA 14 :EPFLNEWKEA T0294 28 :DCEVEQWD 2dldA 26 :DIDVDYTD T0294 38 :EPIPAKE 2dldA 34 :KLLTPET T0294 46 :ERGVAGAHGLLCLLSDHVDKRILDAAGA 2dldA 41 :AKLAKGADGVVVYQQLDYTADTLQALAD T0294 74 :NLKVISTM 2dldA 70 :GVTKMSLR T0294 84 :GIDHLALDEIKKRGIRVGYTPDVLTDTTAEL 2dldA 80 :GVDNIDMDKAKELGFQITNVPVYSPNAIAEH T0294 117 :SLLLTTCRRLPEAIEEVKNGGWTSWK 2dldA 113 :IQAARVLRQDKRMDEKMAKRDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2dldA 139 :TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGA T0294 179 :RFLYTGRQPRPEEAAE 2dldA 171 :KVIAYDIFKNPELEKK T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 2dldA 187 :GYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE T0294 275 :PLPTNHP 2dldA 271 :KDWEGKE T0294 284 :T 2dldA 280 :D T0294 285 :LKNCVILPHIG 2dldA 289 :RPNVLVTPHTA T0294 298 :THRTRNTMSLLAANNLLAG 2dldA 302 :TTHAVRNMVVKAFNNNLKL T0294 319 :GEPMPSELKL 2dldA 323 :GEKPDSPVAL Number of specific fragments extracted= 17 number of extra gaps= 6 total=674 Number of alignments=53 # 2dldA read from 2dldA/merged-good-all-a2m # found chain 2dldA in template set Warning: unaligning (T0294)C29 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)K25 Warning: unaligning (T0294)S82 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)V79 Warning: unaligning (T0294)V83 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)V79 Warning: unaligning (T0294)A115 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)A112 Warning: unaligning (T0294)V116 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)A112 Warning: unaligning (T0294)S296 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)Y301 Warning: unaligning (T0294)L317 because of BadResidue code BAD_PEPTIDE in next template residue (2dldA)N322 Warning: unaligning (T0294)R318 because of BadResidue code BAD_PEPTIDE at template residue (2dldA)N322 T0294 15 :IPAEGRVALARAAD 2dldA 10 :RKDEEPFLNEWKEA T0294 30 :EVEQWDSDEPIPAKEL 2dldA 26 :DIDVDYTDKLLTPETA T0294 48 :GVAGAHGLLCLLSDHVDKRILDAAG 2dldA 42 :KLAKGADGVVVYQQLDYTADTLQAL T0294 74 :NLKVISTM 2dldA 70 :GVTKMSLR T0294 84 :GIDHLALDEIKKRGIRVGYTPDVLTDTTAEL 2dldA 80 :GVDNIDMDKAKELGFQITNVPVYSPNAIAEH T0294 117 :SLLLTTCRRLPEAIEEVKNGGWTSWK 2dldA 113 :IQAARVLRQDKRMDEKMAKRDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 2dldA 139 :TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKN T0294 190 :EEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 2dldA 181 :PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE T0294 275 :PLPTNH 2dldA 271 :KDWEGK T0294 281 :PLLTLKNCVILPHIG 2dldA 285 :DLIDRPNVLVTPHTA T0294 298 :THRTRNTMSLLAANNLLAG 2dldA 302 :TTHAVRNMVVKAFNNNLKL T0294 319 :GEPMPSEL 2dldA 323 :GEKPDSPV Number of specific fragments extracted= 12 number of extra gaps= 5 total=686 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g76A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2g76A expands to /projects/compbio/data/pdb/2g76.pdb.gz 2g76A:Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 767, because occupancy 0.300 <= existing 0.700 in 2g76A Skipped atom 771, because occupancy 0.300 <= existing 0.700 in 2g76A Skipped atom 773, because occupancy 0.300 <= existing 0.700 in 2g76A Skipped atom 775, because occupancy 0.300 <= existing 0.700 in 2g76A Skipped atom 777, because occupancy 0.300 <= existing 0.700 in 2g76A Skipped atom 1371, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 1375, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 1377, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 1379, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 1381, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 1383, because occupancy 0.200 <= existing 0.800 in 2g76A Skipped atom 2030, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 2034, because occupancy 0.500 <= existing 0.500 in 2g76A Skipped atom 2036, because occupancy 0.500 <= existing 0.500 in 2g76A # T0294 read from 2g76A/merged-good-all-a2m # 2g76A read from 2g76A/merged-good-all-a2m # adding 2g76A to template set # found chain 2g76A in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2g76A)L5 Warning: unaligning (T0294)L317 because last residue in template chain is (2g76A)V306 T0294 7 :MKVFVTRRIPAEGRVALARA 2g76A 6 :RKVLISDSLDPCCRKILQDG T0294 28 :DCEVEQ 2g76A 26 :GLQVVE T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 2g76A 32 :KQNLSKEELIAELQDCEGLIVRSATKVTADVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 2g76A 67 :EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2g76A 137 :FMGTELNGKTLGILGLGRIGREVATRMQSFGM T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 2g76A 169 :KTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP T0294 277 :PTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAG 2g76A 266 :PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=693 Number of alignments=55 # 2g76A read from 2g76A/merged-good-all-a2m # found chain 2g76A in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2g76A)L5 Warning: unaligning (T0294)L317 because last residue in template chain is (2g76A)V306 T0294 7 :MKVFVTRRIPAEGRVALARA 2g76A 6 :RKVLISDSLDPCCRKILQDG T0294 28 :DCEVEQWD 2g76A 26 :GLQVVEKQ T0294 39 :PIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 2g76A 34 :NLSKEELIAELQDCEGLIVRSATKVTADVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 2g76A 67 :EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2g76A 137 :FMGTELNGKTLGILGLGRIGREVATRMQSFGM T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 2g76A 169 :KTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP T0294 277 :PTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAG 2g76A 266 :PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM Number of specific fragments extracted= 7 number of extra gaps= 0 total=700 Number of alignments=56 # 2g76A read from 2g76A/merged-good-all-a2m # found chain 2g76A in template set Warning: unaligning (T0294)L317 because last residue in template chain is (2g76A)V306 T0294 19 :GRVALARAADCEVEQWDSDE 2g76A 15 :DPCCRKILQDGGLQVVEKQN T0294 41 :PAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 2g76A 35 :LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 2g76A 137 :FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVS T0294 193 :AEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLP 2g76A 183 :ASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPR T0294 279 :NHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAG 2g76A 268 :DRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM Number of specific fragments extracted= 5 number of extra gaps= 0 total=705 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gsdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/2gsdA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/2gsdA/merged-good-all-a2m.gz for input Trying 2gsdA/merged-good-all-a2m Error: Couldn't open file 2gsdA/merged-good-all-a2m or 2gsdA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j4aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j4aA expands to /projects/compbio/data/pdb/1j4a.pdb.gz 1j4aA:Skipped atom 485, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 487, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 489, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 491, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 493, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 589, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 591, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1333, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1335, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1337, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1339, because occupancy 0.000 <= existing 0.000 in 1j4aA Skipped atom 1341, because occupancy 0.000 <= existing 0.000 in 1j4aA Skipped atom 1470, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1472, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1474, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1476, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1555, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1557, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1559, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 1561, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2073, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2075, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2077, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2079, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2081, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2182, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2184, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2186, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2188, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2190, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2360, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2362, because occupancy 0.500 <= existing 0.500 in 1j4aA Skipped atom 2364, because occupancy 0.500 <= existing 0.500 in 1j4aA # T0294 read from 1j4aA/merged-good-all-a2m # 1j4aA read from 1j4aA/merged-good-all-a2m # adding 1j4aA to template set # found chain 1j4aA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1j4aA)T2 Warning: unaligning (T0294)S296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j4aA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j4aA)Y301 T0294 8 :KVFVTRRIP 1j4aA 3 :KIFAYAIRE T0294 17 :AEGRVALARA 1j4aA 14 :KPFLKEWEDA T0294 27 :ADCEVEQW 1j4aA 25 :KDVEVEYT T0294 37 :DEPIPAKE 1j4aA 33 :DKLLTPET T0294 46 :ERGVAGAHGLLCLLSDHVDKRILDAAGA 1j4aA 41 :VALAKGADGVVVYQQLDYIAETLQALAD T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1j4aA 70 :GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1j4aA 139 :TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA T0294 179 :RFLYTGRQPRPEEAAE 1j4aA 171 :KVITYDIFRNPELEKK T0294 196 :QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1j4aA 187 :GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE T0294 275 :PLPTNHPLLT 1j4aA 271 :EDWEGKEFPD T0294 285 :LKNCVILPHIG 1j4aA 289 :RPNVLVTPKTA T0294 298 :THRTRNTMSLLAANNLLAGLRGEPMPSELKL 1j4aA 302 :TTHAVRNMVVKAFDNNLELVEGKEAETPVKV Number of specific fragments extracted= 12 number of extra gaps= 1 total=717 Number of alignments=58 # 1j4aA read from 1j4aA/merged-good-all-a2m # found chain 1j4aA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1j4aA)T2 Warning: unaligning (T0294)S296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j4aA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j4aA)Y301 T0294 8 :KVFVTR 1j4aA 3 :KIFAYA T0294 15 :IP 1j4aA 9 :IR T0294 17 :AEGRVALARAA 1j4aA 14 :KPFLKEWEDAH T0294 28 :DCEVEQWD 1j4aA 26 :DVEVEYTD T0294 38 :EPIPAKE 1j4aA 34 :KLLTPET T0294 46 :ERGVAGAHGLLCLLSDHVDKRILDAAGA 1j4aA 41 :VALAKGADGVVVYQQLDYIAETLQALAD T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1j4aA 70 :GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1j4aA 139 :TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA T0294 179 :RFLYTGRQPRPEEA 1j4aA 171 :KVITYDIFRNPELE T0294 194 :EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1j4aA 185 :KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE T0294 275 :PLPTNHPLLT 1j4aA 271 :EDWEGKEFPD T0294 285 :LKNCVILPHIG 1j4aA 289 :RPNVLVTPKTA T0294 298 :THRTRNTMSLLAANNLLAGLRGEPMPSELKL 1j4aA 302 :TTHAVRNMVVKAFDNNLELVEGKEAETPVKV Number of specific fragments extracted= 13 number of extra gaps= 1 total=730 Number of alignments=59 # 1j4aA read from 1j4aA/merged-good-all-a2m # found chain 1j4aA in template set Warning: unaligning (T0294)S296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j4aA)Y301 Warning: unaligning (T0294)A297 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j4aA)Y301 T0294 21 :VALARAADCEVEQWDSDEPIPAK 1j4aA 17 :LKEWEDAHKDVEVEYTDKLLTPE T0294 48 :GVAGAHGLLCLLSDHVDKRILDAAG 1j4aA 42 :ALAKGADGVVVYQQLDYIAETLQAL T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1j4aA 69 :NGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1j4aA 139 :TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE T0294 194 :EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1j4aA 185 :KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNE T0294 281 :PLLTLKNCVILPHIG 1j4aA 285 :DLIARPNVLVTPKTA T0294 298 :THRTRNTMSLLAANNLLAGLRGEPMPSELKL 1j4aA 302 :TTHAVRNMVVKAFDNNLELVEGKEAETPVKV Number of specific fragments extracted= 7 number of extra gaps= 1 total=737 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pjcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pjcA expands to /projects/compbio/data/pdb/1pjc.pdb.gz 1pjcA:# T0294 read from 1pjcA/merged-good-all-a2m # 1pjcA read from 1pjcA/merged-good-all-a2m # adding 1pjcA to template set # found chain 1pjcA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1pjcA)M1 T0294 8 :KVFVTRRI 1pjcA 2 :EIGVPKEI T0294 16 :PAEGRVALAR 1pjcA 19 :SPSSVRTLVE T0294 27 :ADCEVEQWDS 1pjcA 29 :AGHTVFIETQ T0294 39 :PIPAKELERG 1pjcA 44 :GFADQDYVQA T0294 51 :GAHGL 1pjcA 54 :GAQVV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1pjcA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTTCRRLP 1pjcA 128 :LLTPMSIIAGRLSVQFGARFL T0294 137 :GWTSWKPLWLCGY 1pjcA 149 :ERQQGGRGVLLGG T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1pjcA 164 :GVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGR 1pjcA 192 :QVQIFDI T0294 188 :RPEEAAE 1pjcA 199 :NVERLSY T0294 196 :QAEFV 1pjcA 213 :RVELL T0294 201 :STPELAAQSDFIVVAC 1pjcA 223 :EIETAVAEADLLIGAV T0294 218 :LTPA 1pjcA 239 :LVPG T0294 225 :LCNKDFFQKMKETAVFINISRGDV 1pjcA 248 :LVPASLVEQMRTGSVIVDVAVDQG T0294 270 :VTSPEPLPTNHPLLTLKNCVILP 1pjcA 274 :VETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjcA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 17 number of extra gaps= 0 total=754 Number of alignments=61 # 1pjcA read from 1pjcA/merged-good-all-a2m # found chain 1pjcA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1pjcA)M1 T0294 8 :KVFVTRR 1pjcA 2 :EIGVPKE T0294 15 :IPAEGRVALARA 1pjcA 18 :LSPSSVRTLVEA T0294 28 :DCEVEQWDS 1pjcA 30 :GHTVFIETQ T0294 39 :PIPAKELERG 1pjcA 44 :GFADQDYVQA T0294 51 :GAHG 1pjcA 54 :GAQV T0294 55 :LLCLLS 1pjcA 69 :MVVKVK T0294 62 :HVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1pjcA 75 :EPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTTCRRL 1pjcA 128 :LLTPMSIIAGRLSVQFGARF T0294 134 :KNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1pjcA 148 :LERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGRQPR 1pjcA 192 :QVQIFDINVE T0294 191 :EA 1pjcA 202 :RL T0294 195 :FQAEFV 1pjcA 212 :SRVELL T0294 201 :STPELAAQSDFIVVAC 1pjcA 223 :EIETAVAEADLLIGAV T0294 218 :LTPA 1pjcA 239 :LVPG T0294 222 :TE 1pjcA 246 :PI T0294 225 :LCNKDFFQKMKETAVFINIS 1pjcA 248 :LVPASLVEQMRTGSVIVDVA T0294 245 :RGDVV 1pjcA 270 :QGGCV T0294 271 :TSPEPLPTNHPLLTLKNCVILP 1pjcA 275 :ETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjcA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 19 number of extra gaps= 0 total=773 Number of alignments=62 # 1pjcA read from 1pjcA/merged-good-all-a2m # found chain 1pjcA in template set T0294 24 :ARAADCEVEQWDS 1pjcA 26 :LVEAGHTVFIETQ T0294 39 :PIPAKELERGV 1pjcA 44 :GFADQDYVQAG T0294 53 :HGLL 1pjcA 55 :AQVV T0294 57 :CLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1pjcA 70 :VVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYE T0294 105 :DVLTDTTAELAVSLLLTTCRRLPE 1pjcA 126 :LPLLTPMSIIAGRLSVQFGARFLE T0294 136 :GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR 1pjcA 150 :RQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN T0294 189 :PEE 1pjcA 200 :VER T0294 192 :AAEFQAEFVS 1pjcA 211 :GSRVELLYSN T0294 202 :TPELAAQSDFIVVACSLTPA 1pjcA 224 :IETAVAEADLLIGAVLVPGR T0294 225 :LCNKDFFQKMKETAVFINISRGD 1pjcA 248 :LVPASLVEQMRTGSVIVDVAVDQ T0294 262 :KIA 1pjcA 271 :GGC T0294 270 :VTSPEPLPTNH 1pjcA 274 :VETLHPTSHTQ T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjcA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 13 number of extra gaps= 0 total=786 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1li4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1li4A expands to /projects/compbio/data/pdb/1li4.pdb.gz 1li4A:# T0294 read from 1li4A/merged-good-all-a2m # 1li4A read from 1li4A/merged-good-all-a2m # adding 1li4A to template set # found chain 1li4A in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1li4A 42 :SKPLKGARIAGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGV 1li4A 62 :VLIETLVTLGAEVQWSSCNIFSTQDHAAAAI T0294 50 :AGAHGL 1li4A 95 :AGIPVY T0294 58 :LLSDHVDKRILDAAG 1li4A 101 :AWKGETDEEYLWCIE T0294 73 :A 1li4A 122 :D T0294 74 :NLKVIST 1li4A 124 :PLNMILD T0294 83 :VGIDHLAL 1li4A 131 :DGGDLTNL T0294 92 :EIKKR 1li4A 139 :IHTKY T0294 97 :GIRVGYTPDVLTDT 1li4A 174 :KVPAINVNDSVTKS T0294 111 :TAELAVSLLLTTCRR 1li4A 191 :NLYGCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1li4A 206 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPRPE 1li4A 238 :RVIITEIDPINA T0294 191 :EAAEFQAEFVSTPELAAQSDFIVVAC 1li4A 251 :QAAMEGYEVTTMDEACQEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1li4A 277 :GCIDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1li4A 306 :IDVKWLNE T0294 263 :IAAAGLDVTS 1li4A 320 :NIKPQVDRYR T0294 277 :PTNHP 1li4A 330 :LKNGR T0294 282 :LLTL 1li4A 339 :LAEG T0294 292 :PHIGSATHRTRNTMSLLAANNLL 1li4A 352 :GHPSFVMSNSFTNQVMAQIELWT Number of specific fragments extracted= 19 number of extra gaps= 0 total=805 Number of alignments=64 # 1li4A read from 1li4A/merged-good-all-a2m # found chain 1li4A in template set T0294 7 :MKVFVTR 1li4A 72 :AEVQWSS T0294 14 :RIPAEGRVALARA 1li4A 83 :STQDHAAAAIAKA T0294 28 :DCEVEQWD 1li4A 96 :GIPVYAWK T0294 39 :PIPAKELERGV 1li4A 104 :GETDEEYLWCI T0294 50 :AG 1li4A 121 :KD T0294 52 :AHGLLCLLS 1li4A 125 :LNMILDDGG T0294 66 :RILDAA 1li4A 134 :DLTNLI T0294 73 :ANLKVISTMS 1li4A 148 :PGIRGISEET T0294 90 :LDEIKKR 1li4A 161 :VHNLYKM T0294 98 :IRVGYTPDV 1li4A 175 :VPAINVNDS T0294 107 :LTDTTAELAVSLLLTT 1li4A 191 :NLYGCRESLIDGIKRA T0294 147 :CGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1li4A 207 :TDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPR 1li4A 238 :RVIITEIDPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVACSL 1li4A 249 :ALQAAMEGYEVTTMDEACQEGNIFVTTTGC T0294 223 :EGLCNKDFFQKMKETAVFINISRGDV 1li4A 279 :IDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1li4A 306 :IDVKWLNE Number of specific fragments extracted= 16 number of extra gaps= 0 total=821 Number of alignments=65 # 1li4A read from 1li4A/merged-good-all-a2m # found chain 1li4A in template set T0294 37 :DEPIPAKELERGVAG 1li4A 102 :WKGETDEEYLWCIEQ T0294 52 :AHGLLCLLSDHVDKRIL 1li4A 123 :GPLNMILDDGGDLTNLI T0294 69 :DAAGANLKVISTMS 1li4A 144 :PQLLPGIRGISEET T0294 90 :LDEIKK 1li4A 161 :VHNLYK T0294 96 :RG 1li4A 170 :NG T0294 98 :IRVGYTPDV 1li4A 175 :VPAINVNDS T0294 107 :LTDTTAELAVSLLLTTC 1li4A 191 :NLYGCRESLIDGIKRAT T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP 1li4A 208 :DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCID T0294 225 :LCNKDFFQKMKETAVFINISRGD 1li4A 281 :IILGRHFEQMKDDAIVCNIGHFD T0294 248 :VVNQDDLYQ 1li4A 305 :EIDVKWLNE Number of specific fragments extracted= 10 number of extra gaps= 0 total=831 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l7dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l7dA expands to /projects/compbio/data/pdb/1l7d.pdb.gz 1l7dA:# T0294 read from 1l7dA/merged-good-all-a2m # 1l7dA read from 1l7dA/merged-good-all-a2m # adding 1l7dA to template set # found chain 1l7dA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1l7dA)M1 Warning: unaligning (T0294)T202 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l7dA)K245 T0294 8 :KVFVTR 1l7dA 2 :KIAIPK T0294 14 :RIPAEGRVALAR 1l7dA 17 :AISPEVVKKLVG T0294 27 :ADCEVEQW 1l7dA 29 :LGFEVIVE T0294 39 :PIPAKELERG 1l7dA 44 :SITDDALTAA T0294 49 :VAGAHGLLCLLSDHVDKR 1l7dA 65 :LSQADVVWKVQRPMTAEE T0294 67 :ILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGY 1l7dA 86 :EVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYA T0294 103 :TPDVLT 1l7dA 125 :MPRISR T0294 109 :DTTAELAVSLLLTTCRRLP 1l7dA 138 :SSQSNLAGYRAVIDGAYEF T0294 138 :WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1l7dA 157 :ARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGA T0294 179 :RFLYTGRQP 1l7dA 197 :VVMATDVRA T0294 188 :RPEEAAEFQAEFVS 1l7dA 207 :TKEQVESLGGKFIT T0294 204 :ELAAQSDFIVV 1l7dA 253 :KELVKTDIAIT T0294 216 :CSLTPA 1l7dA 264 :TALIPG T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 1l7dA 272 :APVLITEEMVTKMKPGSVIIDLAVEAG T0294 250 :N 1l7dA 300 :N T0294 274 :EPLPTNHPLLTLKNCVILPH 1l7dA 301 :CPLSEPGKIVVKHGVKIVGH T0294 294 :IGSATH 1l7dA 324 :PSRVAA T0294 304 :TMSLLAANNLLAGL 1l7dA 330 :DASPLFAKNLLNFL Number of specific fragments extracted= 18 number of extra gaps= 0 total=849 Number of alignments=67 # 1l7dA read from 1l7dA/merged-good-all-a2m # found chain 1l7dA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1l7dA)M1 T0294 8 :KVFVTR 1l7dA 2 :KIAIPK T0294 15 :IPAEGRVALARA 1l7dA 18 :ISPEVVKKLVGL T0294 28 :DCEVEQWDS 1l7dA 30 :GFEVIVEQG T0294 39 :PIPAKELERG 1l7dA 44 :SITDDALTAA T0294 49 :VAGAHGLLCLLS 1l7dA 65 :LSQADVVWKVQR T0294 62 :HVDKR 1l7dA 77 :PMTAE T0294 67 :ILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLT 1l7dA 86 :EVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPR T0294 109 :DTTAELAVSLLLTTCRRL 1l7dA 138 :SSQSNLAGYRAVIDGAYE T0294 138 :WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1l7dA 157 :ARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGA T0294 179 :RFLYTGRQPR 1l7dA 197 :VVMATDVRAA T0294 189 :PEEAAEFQAEFVS 1l7dA 208 :KEQVESLGGKFIT T0294 204 :ELAAQSDFIVV 1l7dA 253 :KELVKTDIAIT T0294 216 :CSLTPA 1l7dA 264 :TALIPG T0294 222 :TE 1l7dA 273 :PV T0294 225 :LCNKDFFQKMKETAVFINIS 1l7dA 275 :LITEEMVTKMKPGSVIIDLA T0294 245 :RGDVVN 1l7dA 300 :NCPLSE T0294 260 :SGKIAA 1l7dA 306 :PGKIVV T0294 285 :LKNCVILPH 1l7dA 312 :KHGVKIVGH T0294 294 :IGSAT 1l7dA 324 :PSRVA T0294 303 :NTMSLLAANNLLAGL 1l7dA 329 :ADASPLFAKNLLNFL Number of specific fragments extracted= 20 number of extra gaps= 0 total=869 Number of alignments=68 # 1l7dA read from 1l7dA/merged-good-all-a2m # found chain 1l7dA in template set Warning: unaligning (T0294)T202 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l7dA)K245 T0294 24 :ARAADCEVEQWDS 1l7dA 48 :DALTAAGATIAST T0294 46 :ERGVAGAHGLLCLLSDHVDKRI 1l7dA 61 :AAQALSQADVVWKVQRPMTAEE T0294 68 :LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1l7dA 87 :VALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAME T0294 105 :DVLTDTTAELAVSLLLTTCRRLP 1l7dA 134 :MDILSSQSNLAGYRAVIDGAYEF T0294 138 :WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS 1l7dA 157 :ARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT T0294 205 :LAAQSDF 1l7dA 254 :ELVKTDI T0294 213 :VVACSLTPA 1l7dA 261 :AITTALIPG T0294 224 :GLCNKDFFQKMKETAVFINISRGDVVN 1l7dA 274 :VLITEEMVTKMKPGSVIIDLAVEAGGN T0294 260 :SGKIA 1l7dA 306 :PGKIV T0294 286 :KNCVILPHIGSATH 1l7dA 313 :HGVKIVGHTNVPSR T0294 301 :TRNTMSLLAANNLLAGL 1l7dA 327 :VAADASPLFAKNLLNFL Number of specific fragments extracted= 11 number of extra gaps= 0 total=880 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c1dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0294 read from 1c1dA/merged-good-all-a2m # 1c1dA read from 1c1dA/merged-good-all-a2m # found chain 1c1dA in training set T0294 4 :VRLMKVFVTRR 1c1dA 74 :MGGGKSVIALP T0294 15 :IPAEGRVALARA 1c1dA 90 :IDPSTWARILRI T0294 45 :LER 1c1dA 102 :HAE T0294 67 :ILDAAGANL 1c1dA 105 :NIDKLSGNY T0294 78 :ISTMSVGIDHLALDEIKKR 1c1dA 114 :WTGPDVNTNSADMDTLNDT T0294 97 :GI 1c1dA 144 :GG T0294 104 :PDVLTDTTAELAVSLLLTTCR 1c1dA 146 :AGSSAFTTAVGVFEAMKATVA T0294 146 :LCGY 1c1dA 167 :HRGL T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1c1dA 172 :SLDGLTVLVQGLGAVGGSLASLAAEAGA T0294 179 :RFLYTGRQP 1c1dA 200 :QLLVADTDT T0294 188 :RPEEAAEFQAEFVSTPELAAQ 1c1dA 210 :RVAHAVALGHTAVALEDVLST T0294 209 :SDFIVVACSL 1c1dA 232 :CDVFAPCAMG T0294 224 :GLCNKDFFQKMK 1c1dA 242 :GVITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1c1dA 254 :CSVVAGAANNVIADEAASDILHARGILYA Number of specific fragments extracted= 14 number of extra gaps= 0 total=894 Number of alignments=70 # 1c1dA read from 1c1dA/merged-good-all-a2m # found chain 1c1dA in training set T0294 9 :VFVTRR 1c1dA 80 :VIALPA T0294 15 :IPAEGRVALARAA 1c1dA 90 :IDPSTWARILRIH T0294 65 :KRILDAAGANLK 1c1dA 103 :AENIDKLSGNYW T0294 79 :STMSVGIDHLALDEIKK 1c1dA 115 :TGPDVNTNSADMDTLND T0294 96 :RG 1c1dA 143 :RG T0294 103 :TPDVLTDTTAELAVSLLLTTCRR 1c1dA 145 :GAGSSAFTTAVGVFEAMKATVAH T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1c1dA 168 :RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGA T0294 179 :RFLYTGRQPR 1c1dA 200 :QLLVADTDTE T0294 189 :PEEAAEFQAEFVSTPELAAQ 1c1dA 211 :VAHAVALGHTAVALEDVLST T0294 209 :SDFIVVACSLT 1c1dA 232 :CDVFAPCAMGG T0294 225 :LCNKDFFQKMK 1c1dA 243 :VITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1c1dA 254 :CSVVAGAANNVIADEAASDILHARGILYA T0294 296 :SATHRTRNTMSLLAANNLLAGL 1c1dA 302 :GWSESVVHERAVAIGDTLNQVF Number of specific fragments extracted= 13 number of extra gaps= 0 total=907 Number of alignments=71 # 1c1dA read from 1c1dA/merged-good-all-a2m # found chain 1c1dA in training set T0294 40 :IPAKELERGVAG 1c1dA 90 :IDPSTWARILRI T0294 65 :KRILDAAGAN 1c1dA 103 :AENIDKLSGN T0294 77 :VISTMSVGIDHLALDEIKK 1c1dA 113 :YWTGPDVNTNSADMDTLND T0294 96 :RG 1c1dA 143 :RG T0294 103 :TPDVLTDTTAELAVSLLLTTCRR 1c1dA 145 :GAGSSAFTTAVGVFEAMKATVAH T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQ 1c1dA 168 :RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST T0294 209 :SDFIVVAC 1c1dA 232 :CDVFAPCA T0294 218 :LT 1c1dA 240 :MG T0294 224 :GLCNKDFFQKMK 1c1dA 242 :GVITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1c1dA 254 :CSVVAGAANNVIADEAASDILHARGILYA Number of specific fragments extracted= 10 number of extra gaps= 0 total=917 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lehA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lehA expands to /projects/compbio/data/pdb/1leh.pdb.gz 1lehA:# T0294 read from 1lehA/merged-good-all-a2m # 1lehA read from 1lehA/merged-good-all-a2m # adding 1lehA to template set # found chain 1lehA in template set T0294 7 :MKV 1lehA 38 :PAL T0294 10 :FVTRRIP 1lehA 43 :ARMWTYN T0294 17 :AEGRVALARA 1lehA 52 :EEAIEDALRL T0294 27 :ADCE 1lehA 72 :AGLN T0294 31 :VEQWDSDEPIPAK 1lehA 82 :VIIGDPFADKNED T0294 44 :ELERGVAG 1lehA 98 :ALGRFIQG T0294 55 :LLCLLSDHVDKRILDAAGAN 1lehA 110 :YITAEDVGTTVDDMDLIHQE T0294 85 :IDHLA 1lehA 130 :TDYVT T0294 90 :LDEIKKR 1lehA 137 :SPAFGSS T0294 106 :VLTDTTAELAVSLLL 1lehA 144 :GNPSPVTAYGVYRGM T0294 121 :TTCRRL 1lehA 160 :AAAKEA T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1lehA 166 :FGSDSLEGLAVSVQGLGNVAKALCKKLNTEGA T0294 179 :RFLYTGR 1lehA 198 :KLVVTDV T0294 188 :RPEEAAEF 1lehA 205 :NKAAVSAA T0294 196 :QAEFVSTPELAA 1lehA 217 :GADAVAPNAIYG T0294 209 :SDFIVVACS 1lehA 231 :CDIFAPCAL T0294 223 :EGLCNKDFFQKMKETAV 1lehA 240 :GAVLNDFTIPQLKAKVI T0294 243 :ISRGDV 1lehA 257 :AGSADN T0294 249 :VNQDDLYQALASGKIAA 1lehA 265 :KDPRHGKYLHELGIVYA Number of specific fragments extracted= 19 number of extra gaps= 0 total=936 Number of alignments=73 # 1lehA read from 1lehA/merged-good-all-a2m # found chain 1lehA in template set T0294 7 :MKVFVTRR 1lehA 79 :GKTVIIGD T0294 15 :IPAEGRVALARA 1lehA 91 :KNEDMFRALGRF T0294 27 :ADCEVEQWD 1lehA 106 :LNGRYITAE T0294 60 :SDHVDKRILDAAGANL 1lehA 115 :DVGTTVDDMDLIHQET T0294 86 :DHLA 1lehA 131 :DYVT T0294 90 :LDEIKKR 1lehA 137 :SPAFGSS T0294 106 :VLTDTTAELAVSLLLTTCRRL 1lehA 144 :GNPSPVTAYGVYRGMKAAAKE T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1lehA 166 :FGSDSLEGLAVSVQGLGNVAKALCKKLNTEGA T0294 179 :RFLYTGRQPR 1lehA 198 :KLVVTDVNKA T0294 193 :AEFQAEFVSTPELAA 1lehA 214 :AEEGADAVAPNAIYG T0294 209 :SDFIVVACSL 1lehA 231 :CDIFAPCALG T0294 224 :GLCNKDFFQKMKET 1lehA 241 :AVLNDFTIPQLKAK T0294 239 :VFINISRGDVVNQDDLYQALASGKIA 1lehA 255 :VIAGSADNQLKDPRHGKYLHELGIVY T0294 275 :P 1lehA 330 :P T0294 301 :TRNTMSLLAANNLLAGL 1lehA 331 :SYVAADRMAEERIAKVA T0294 318 :RGEPMPS 1lehA 350 :RSQFLQD Number of specific fragments extracted= 16 number of extra gaps= 0 total=952 Number of alignments=74 # 1lehA read from 1lehA/merged-good-all-a2m # found chain 1lehA in template set T0294 32 :EQWDSDEPIPAKEL 1lehA 82 :VIIGDPFADKNEDM T0294 46 :ERGVAGAHGLLCLLSDHVDKRILDAAGANL 1lehA 101 :RFIQGLNGRYITAEDVGTTVDDMDLIHQET T0294 86 :DHL 1lehA 131 :DYV T0294 89 :ALDEIKK 1lehA 136 :ISPAFGS T0294 106 :VLTDTTAELAVSLLLTTCRRL 1lehA 144 :GNPSPVTAYGVYRGMKAAAKE T0294 145 :WLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR 1lehA 165 :AFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN T0294 189 :PEE 1lehA 206 :KAA T0294 192 :AAEFQAEFVSTPELAAQ 1lehA 213 :VAEEGADAVAPNAIYGV T0294 209 :SDFI 1lehA 231 :CDIF T0294 214 :VACSLTP 1lehA 235 :APCALGA T0294 225 :LCNKDFFQKMKETAV 1lehA 242 :VLNDFTIPQLKAKVI T0294 241 :INISRGDVVNQDDLYQALASGKIA 1lehA 257 :AGSADNQLKDPRHGKYLHELGIVY T0294 281 :PLLTLK 1lehA 297 :ELYGYN T0294 299 :HRTRNTMSLLAANNLLAGL 1lehA 303 :RTRAMKRVDGIYDSIEKIF Number of specific fragments extracted= 14 number of extra gaps= 0 total=966 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ybaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/1ybaA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/1ybaA/merged-good-all-a2m.gz for input Trying 1ybaA/merged-good-all-a2m Error: Couldn't open file 1ybaA/merged-good-all-a2m or 1ybaA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a7aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a7aA expands to /projects/compbio/data/pdb/1a7a.pdb.gz 1a7aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1a7aA/merged-good-all-a2m # 1a7aA read from 1a7aA/merged-good-all-a2m # adding 1a7aA to template set # found chain 1a7aA in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1a7aA 42 :SKPLKGARIAGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGV 1a7aA 62 :VLIETLVTLGAEVQWSSCNIFSTQNHAAAAI T0294 50 :AGAHGL 1a7aA 95 :AGIPVY T0294 59 :LSDHVDKRILDAA 1a7aA 101 :AWKGETDEEYLWC T0294 72 :GANLKVIST 1a7aA 122 :DGPLNMILD T0294 83 :VGIDHLAL 1a7aA 131 :DGGDLTNL T0294 92 :EIKKR 1a7aA 139 :IHTKY T0294 97 :GIRVGYTPDVLTDT 1a7aA 174 :KVPAINVNDSVTKS T0294 111 :TAELAVSLLLTTCRR 1a7aA 191 :NLYGCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1a7aA 206 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPRPE 1a7aA 238 :RVIITEIDPINA T0294 191 :EAAEFQAEFVSTPELAAQSDFIVVAC 1a7aA 251 :QAAMEGYEVTTMDEACQEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1a7aA 277 :GCIDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1a7aA 306 :IDVKWLNE T0294 262 :KIAAAGLDVTS 1a7aA 319 :VNIKPQVDRYR T0294 277 :PTNHP 1a7aA 330 :LKNGR T0294 282 :LLT 1a7aA 339 :LAE T0294 292 :PHIGSATHRTRNTMSLLAANNLL 1a7aA 352 :GHPSFVMSNSFTNQVMAQIELWT Number of specific fragments extracted= 18 number of extra gaps= 0 total=984 Number of alignments=76 # 1a7aA read from 1a7aA/merged-good-all-a2m # found chain 1a7aA in template set T0294 7 :MKVFVTR 1a7aA 72 :AEVQWSS T0294 14 :RIPAEGRVALARA 1a7aA 83 :STQNHAAAAIAKA T0294 28 :DCEVEQWD 1a7aA 96 :GIPVYAWK T0294 39 :PIPAKELERGV 1a7aA 104 :GETDEEYLWCI T0294 50 :AG 1a7aA 121 :KD T0294 52 :AHGLLCLLS 1a7aA 125 :LNMILDDGG T0294 66 :RILDAA 1a7aA 134 :DLTNLI T0294 72 :GANLKVISTMS 1a7aA 147 :LPGIRGISEET T0294 89 :ALDEIKKRG 1a7aA 163 :NLYKMMANG T0294 98 :IRVGYTPDV 1a7aA 175 :VPAINVNDS T0294 107 :LTDTTAELAVSLLLT 1a7aA 191 :NLYGCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1a7aA 206 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPR 1a7aA 238 :RVIITEIDPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVAC 1a7aA 249 :ALQAAMEGYEVTTMDEACQEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1a7aA 277 :GCIDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLYQ 1a7aA 306 :IDVKWLNE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1000 Number of alignments=77 # 1a7aA read from 1a7aA/merged-good-all-a2m # found chain 1a7aA in template set T0294 34 :WDSDEPIPAKELERGV 1a7aA 99 :VYAWKGETDEEYLWCI T0294 50 :AGAHGLLCLLSDHVDKRILDAAGA 1a7aA 121 :KDGPLNMILDDGGDLTNLIHTKYP T0294 74 :NLKVISTMS 1a7aA 149 :GIRGISEET T0294 89 :ALDEIKKRG 1a7aA 163 :NLYKMMANG T0294 98 :IRVGYTPDVLT 1a7aA 175 :VPAINVNDSVT T0294 109 :DTTAELAVSLLLTTC 1a7aA 193 :YGCRESLIDGIKRAT T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP 1a7aA 208 :DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCID T0294 225 :LCNKDFFQKMKETAVFINISRGD 1a7aA 281 :IILGRHFEQMKDDAIVCNIGHFD T0294 248 :VVNQDDLYQ 1a7aA 305 :EIDVKWLNE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1009 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sayA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sayA expands to /projects/compbio/data/pdb/1say.pdb.gz 1sayA:# T0294 read from 1sayA/merged-good-all-a2m # 1sayA read from 1sayA/merged-good-all-a2m # adding 1sayA to template set # found chain 1sayA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1sayA)M1 Warning: unaligning (T0294)L218 because of BadResidue code BAD_PEPTIDE in next template residue (1sayA)P241 Warning: unaligning (T0294)T219 because of BadResidue code BAD_PEPTIDE at template residue (1sayA)P241 T0294 8 :KVFVTRR 1sayA 2 :EIGVPKE T0294 15 :IPAEGRVALAR 1sayA 18 :LSPSSVRTLVE T0294 27 :ADCEVEQWDS 1sayA 29 :AGHTVFIETQ T0294 39 :PIPAKELERG 1sayA 44 :GFADQDYVQA T0294 51 :GAHGL 1sayA 54 :GAQVV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1sayA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTTCRRLP 1sayA 128 :LLTPMSIIAGRLSVQFGARFL T0294 137 :GWTSWKPLWLCGY 1sayA 149 :ERQQGGRGVLLGG T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1sayA 164 :GVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGR 1sayA 192 :QVQIFDI T0294 188 :RPEEAAE 1sayA 199 :NVERLSY T0294 196 :QAEFV 1sayA 213 :RVELL T0294 201 :STPELAAQSDFIVVACS 1sayA 223 :EIETAVAEADLLIGAVL T0294 220 :PA 1sayA 242 :GR T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 1sayA 245 :APILVPASLVEQMRTGSVIVDVAVDQG T0294 270 :VTSPEPLPTNHPLLTLKNCVILP 1sayA 274 :VETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1sayA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 17 number of extra gaps= 1 total=1026 Number of alignments=79 # 1sayA read from 1sayA/merged-good-all-a2m # found chain 1sayA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1sayA)M1 Warning: unaligning (T0294)L218 because of BadResidue code BAD_PEPTIDE in next template residue (1sayA)P241 Warning: unaligning (T0294)T219 because of BadResidue code BAD_PEPTIDE at template residue (1sayA)P241 T0294 8 :KVFVTRR 1sayA 2 :EIGVPKE T0294 15 :IPAEGRVALARA 1sayA 18 :LSPSSVRTLVEA T0294 28 :DCEVEQWDS 1sayA 30 :GHTVFIETQ T0294 39 :PIPAKELERG 1sayA 44 :GFADQDYVQA T0294 51 :GAHG 1sayA 54 :GAQV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1sayA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTTCRRL 1sayA 128 :LLTPMSIIAGRLSVQFGARF T0294 134 :KNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1sayA 148 :LERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGRQPR 1sayA 192 :QVQIFDINVE T0294 191 :EA 1sayA 202 :RL T0294 193 :AEFQAEFV 1sayA 210 :FGSRVELL T0294 201 :STPELAAQSDFIVVACS 1sayA 223 :EIETAVAEADLLIGAVL T0294 220 :PA 1sayA 242 :GR T0294 222 :TE 1sayA 246 :PI T0294 225 :LCNKDFFQKMKETAVFINIS 1sayA 248 :LVPASLVEQMRTGSVIVDVA T0294 245 :RGDVVN 1sayA 270 :QGGCVE T0294 272 :SPEPLPTNHPLLTLKNCVILP 1sayA 276 :TLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1sayA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 18 number of extra gaps= 1 total=1044 Number of alignments=80 # 1sayA read from 1sayA/merged-good-all-a2m # found chain 1sayA in template set Warning: unaligning (T0294)L218 because of BadResidue code BAD_PEPTIDE in next template residue (1sayA)P241 Warning: unaligning (T0294)T219 because of BadResidue code BAD_PEPTIDE at template residue (1sayA)P241 T0294 24 :ARAADCEVEQWDSDE 1sayA 24 :RTLVEAGHTVFIETQ T0294 39 :PIPAKELERGV 1sayA 44 :GFADQDYVQAG T0294 53 :HGL 1sayA 55 :AQV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1sayA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYE T0294 105 :DVLTDTTAELAVSLLLTTCRRLPE 1sayA 126 :LPLLTPMSIIAGRLSVQFGARFLE T0294 136 :GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR 1sayA 150 :RQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN T0294 189 :PEE 1sayA 200 :VER T0294 192 :AAEFQAEFVS 1sayA 211 :GSRVELLYSN T0294 202 :TPELAAQSDFIVVACS 1sayA 224 :IETAVAEADLLIGAVL T0294 220 :PA 1sayA 242 :GR T0294 225 :LCNKDFFQKMKETAVFINISRGD 1sayA 248 :LVPASLVEQMRTGSVIVDVAVDQ T0294 262 :KI 1sayA 271 :GG T0294 270 :VTSPEPLPTNH 1sayA 274 :VETLHPTSHTQ T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1sayA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 14 number of extra gaps= 1 total=1058 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c2xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c2xA expands to /projects/compbio/data/pdb/2c2x.pdb.gz 2c2xA:# T0294 read from 2c2xA/merged-good-all-a2m # 2c2xA read from 2c2xA/merged-good-all-a2m # adding 2c2xA to template set # found chain 2c2xA in template set Warning: unaligning (T0294)A315 because of BadResidue code BAD_PEPTIDE in next template residue (2c2xA)R281 T0294 5 :RLMKV 2c2xA 31 :RTPGL T0294 10 :FVTRRIPAEGRVALA 2c2xA 37 :TILVGDDPGSQAYVR T0294 25 :RAADCEVEQWDSDEPIPAKELERG 2c2xA 58 :AKVGITSIRRDLPADISTATLNET T0294 68 :LDAA 2c2xA 82 :IDEL T0294 72 :GANLKVISTMSVGIDHLALDEIKKR 2c2xA 88 :NPDCTGYIVQLPLPKHLDENAALER T0294 102 :YTPDVLTDTTAE 2c2xA 118 :DADGLHPTNLGR T0294 114 :LAVSLLLTTCR 2c2xA 140 :CTPRGIVHLLR T0294 146 :LCGYGLTQSTVGIIGLG 2c2xA 151 :RYDISIAGAHVVVIGRG T0294 163 :RIGQAIARRLK 2c2xA 169 :TVGRPLGLLLT T0294 174 :PFGV 2c2xA 182 :SENA T0294 179 :RFLYTGR 2c2xA 186 :TVTLCHT T0294 198 :EFVSTPELAAQSDFIVVAC 2c2xA 193 :GTRDLPALTRQADIVVAAV T0294 221 :ATEGLCNKDF 2c2xA 212 :GVAHLLTADM T0294 234 :MKETAVFINIS 2c2xA 222 :VRPGAAVIDVG T0294 260 :SG 2c2xA 237 :DD T0294 265 :AAGLDV 2c2xA 239 :GLVGDV T0294 277 :PT 2c2xA 245 :HP T0294 281 :PLLT 2c2xA 247 :DVWE T0294 285 :LK 2c2xA 252 :AG T0294 289 :VILPHIGSATHRTRNTMSLLAANNLL 2c2xA 254 :HVSPNPGGVGPLTRAFLLTNVVELAE Number of specific fragments extracted= 20 number of extra gaps= 1 total=1078 Number of alignments=82 # 2c2xA read from 2c2xA/merged-good-all-a2m # found chain 2c2xA in template set Warning: unaligning (T0294)A315 because of BadResidue code BAD_PEPTIDE in next template residue (2c2xA)R281 T0294 4 :VRLMKVFVTRRIPAEGRVALARA 2c2xA 31 :RTPGLGTILVGDDPGSQAYVRGK T0294 27 :ADCEVEQWDSDEPIPAKELER 2c2xA 60 :VGITSIRRDLPADISTATLNE T0294 67 :ILDAA 2c2xA 81 :TIDEL T0294 72 :GANLKVISTMSVGIDHLALDEIKKR 2c2xA 88 :NPDCTGYIVQLPLPKHLDENAALER T0294 102 :YTPDVLTDTTAEL 2c2xA 118 :DADGLHPTNLGRL T0294 115 :AVSLLLTTCR 2c2xA 141 :TPRGIVHLLR T0294 146 :LCGYGLTQSTVGIIGLG 2c2xA 151 :RYDISIAGAHVVVIGRG T0294 163 :RIGQAIARRLK 2c2xA 169 :TVGRPLGLLLT T0294 174 :PFGV 2c2xA 182 :SENA T0294 179 :RFLYTGR 2c2xA 186 :TVTLCHT T0294 198 :EFVSTPELAAQSDFIVVAC 2c2xA 193 :GTRDLPALTRQADIVVAAV T0294 221 :ATEGLCNKDF 2c2xA 212 :GVAHLLTADM T0294 234 :MKETAVFINIS 2c2xA 222 :VRPGAAVIDVG T0294 260 :SGKIAA 2c2xA 237 :DDGLVG T0294 277 :PTNHPLLT 2c2xA 243 :DVHPDVWE T0294 285 :LK 2c2xA 252 :AG T0294 289 :VILPHIGSATHRTRNTMSLLAANNLL 2c2xA 254 :HVSPNPGGVGPLTRAFLLTNVVELAE Number of specific fragments extracted= 17 number of extra gaps= 1 total=1095 Number of alignments=83 # 2c2xA read from 2c2xA/merged-good-all-a2m # found chain 2c2xA in template set Warning: unaligning (T0294)A315 because of BadResidue code BAD_PEPTIDE in next template residue (2c2xA)R281 T0294 21 :VALARAADCEVEQWDSDEPIPAKELERGVA 2c2xA 54 :HADCAKVGITSIRRDLPADISTATLNETID T0294 68 :LDAAGANLKVISTMSVGIDHLALDEIKKR 2c2xA 84 :ELNANPDCTGYIVQLPLPKHLDENAALER T0294 102 :YTPDVLTDTTAEL 2c2xA 118 :DADGLHPTNLGRL T0294 115 :AVSLLLTTCR 2c2xA 141 :TPRGIVHLLR T0294 146 :LCGYGLTQSTVGIIGLG 2c2xA 151 :RYDISIAGAHVVVIGRG T0294 163 :RIGQAIARRLK 2c2xA 169 :TVGRPLGLLLT T0294 174 :PFGVQRFLYTGR 2c2xA 182 :SENATVTLCHTG T0294 199 :FVSTPELAAQSDFIVVACSL 2c2xA 194 :TRDLPALTRQADIVVAAVGV T0294 223 :EGLCNKDF 2c2xA 214 :AHLLTADM T0294 234 :MKETAVFINIS 2c2xA 222 :VRPGAAVIDVG T0294 279 :NH 2c2xA 237 :DD T0294 281 :PLLTL 2c2xA 247 :DVWEL T0294 286 :K 2c2xA 253 :G T0294 289 :VILPHIGSATHRTRNTMSLLAANNLL 2c2xA 254 :HVSPNPGGVGPLTRAFLLTNVVELAE Number of specific fragments extracted= 14 number of extra gaps= 1 total=1109 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hkuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/1hkuA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/1hkuA/merged-good-all-a2m.gz for input Trying 1hkuA/merged-good-all-a2m Error: Couldn't open file 1hkuA/merged-good-all-a2m or 1hkuA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xdwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xdwA expands to /projects/compbio/data/pdb/1xdw.pdb.gz 1xdwA:# T0294 read from 1xdwA/merged-good-all-a2m # 1xdwA read from 1xdwA/merged-good-all-a2m # adding 1xdwA to template set # found chain 1xdwA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1xdwA)M1 Warning: unaligning (T0294)S154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xdwA)T148 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xdwA)T148 Warning: unaligning (T0294)K327 because last residue in template chain is (1xdwA)K331 T0294 8 :KVFVTRRIP 1xdwA 2 :KVLCYGVRD T0294 17 :AEGRVALARAADCEVEQW 1xdwA 13 :LPIFEACNKEFGYDIKCV T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGA 1xdwA 31 :PDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRR 1xdwA 69 :GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRH T0294 128 :EAIEEVKNGGWTSWKPLWLCGYGLTQ 1xdwA 121 :TAYTTSRTAKKNFKVDAFMFSKEVRN T0294 156 :VGIIGLGRIGQAIARRLKPFGV 1xdwA 149 :VGVVGLGRIGRVAAQIFHGMGA T0294 179 :RFLYTGRQPRP 1xdwA 171 :TVIGEDVFEIK T0294 194 :EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1xdwA 184 :EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE T0294 275 :PLPTNHPLLT 1xdwA 270 :KDLEGQKLEN T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSEL 1xdwA 290 :PRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI Number of specific fragments extracted= 10 number of extra gaps= 1 total=1119 Number of alignments=85 # 1xdwA read from 1xdwA/merged-good-all-a2m # found chain 1xdwA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1xdwA)M1 Warning: unaligning (T0294)S154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xdwA)T148 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xdwA)T148 Warning: unaligning (T0294)K327 because last residue in template chain is (1xdwA)K331 T0294 8 :KVFVTR 1xdwA 2 :KVLCYG T0294 15 :IPAEGRVALARA 1xdwA 8 :VRDVELPIFEAC T0294 27 :ADCEVEQWD 1xdwA 23 :FGYDIKCVP T0294 38 :EPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGA 1xdwA 32 :DYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRR 1xdwA 69 :GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRH T0294 128 :EAIEEVKNGGWTSWKPLWLCGYGLTQ 1xdwA 121 :TAYTTSRTAKKNFKVDAFMFSKEVRN T0294 156 :VGIIGLGRIGQAIARRLKPFGV 1xdwA 149 :VGVVGLGRIGRVAAQIFHGMGA T0294 179 :RFLYTGRQPRPE 1xdwA 171 :TVIGEDVFEIKG T0294 194 :EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 1xdwA 184 :EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE T0294 275 :PLPTNHPLLT 1xdwA 270 :KDLEGQKLEN T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSEL 1xdwA 290 :PRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI Number of specific fragments extracted= 11 number of extra gaps= 1 total=1130 Number of alignments=86 # 1xdwA read from 1xdwA/merged-good-all-a2m # found chain 1xdwA in template set Warning: unaligning (T0294)S154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xdwA)T148 Warning: unaligning (T0294)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xdwA)T148 Warning: unaligning (T0294)K327 because last residue in template chain is (1xdwA)K331 T0294 15 :IPAEGRVALARAADCEVEQWDSDEPIPAKELERG 1xdwA 9 :RDVELPIFEACNKEFGYDIKCVPDYLNTKETAEM T0294 50 :AGAHGLLCLLSDHVDKRILDAAGA 1xdwA 43 :AAGFDAVILRGNCFANKQNLDIYK T0294 74 :NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRR 1xdwA 69 :GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRH T0294 128 :EAIEEVKNGGWTSWKPLWLCGYGLTQ 1xdwA 121 :TAYTTSRTAKKNFKVDAFMFSKEVRN T0294 156 :VGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1xdwA 149 :VGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 1xdwA 185 :DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGK T0294 286 :KNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSEL 1xdwA 290 :PRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI Number of specific fragments extracted= 7 number of extra gaps= 1 total=1137 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2nadA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2nadA expands to /projects/compbio/data/pdb/2nad.pdb.gz 2nadA:# T0294 read from 2nadA/merged-good-all-a2m # 2nadA read from 2nadA/merged-good-all-a2m # adding 2nadA to template set # found chain 2nadA in template set Warning: unaligning (T0294)E30 because of BadResidue code BAD_PEPTIDE in next template residue (2nadA)L70 Warning: unaligning (T0294)V31 because of BadResidue code BAD_PEPTIDE at template residue (2nadA)L70 T0294 21 :VALARAADC 2nadA 60 :RKYLESNGH T0294 32 :EQW 2nadA 71 :VVT T0294 35 :DSDEPI 2nadA 76 :KDGPDS T0294 44 :ELERGVAGAHGLLC 2nadA 82 :VFERELVDADVVIS T0294 58 :LLSDHVDKRILDAA 2nadA 98 :FWPAYLTPERIAKA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP 2nadA 112 :KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADC T0294 145 :WLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2nadA 183 :VSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV T0294 179 :RFLYTGRQP 2nadA 216 :HLHYTDRHR T0294 188 :RPEEAAEFQAEFV 2nadA 226 :PESVEKELNLTWH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nadA 240 :TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 10 number of extra gaps= 1 total=1147 Number of alignments=88 # 2nadA read from 2nadA/merged-good-all-a2m # found chain 2nadA in template set Warning: unaligning (T0294)E30 because of BadResidue code BAD_PEPTIDE in next template residue (2nadA)L70 Warning: unaligning (T0294)V31 because of BadResidue code BAD_PEPTIDE at template residue (2nadA)L70 T0294 20 :RVALARA 2nadA 60 :RKYLESN T0294 28 :DC 2nadA 67 :GH T0294 32 :EQWD 2nadA 71 :VVTS T0294 36 :SDEPI 2nadA 77 :DGPDS T0294 44 :ELERGVAGAHGLLCLLSD 2nadA 82 :VFERELVDADVVISQPFW T0294 62 :HVDKRILDAA 2nadA 102 :YLTPERIAKA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPL 2nadA 112 :KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCV T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 2nadA 184 :SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV T0294 179 :RFLYTGRQPR 2nadA 216 :HLHYTDRHRL T0294 189 :PEEAAEFQAEFV 2nadA 227 :ESVEKELNLTWH T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nadA 240 :TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 11 number of extra gaps= 1 total=1158 Number of alignments=89 # 2nadA read from 2nadA/merged-good-all-a2m # found chain 2nadA in template set Warning: unaligning (T0294)E32 because of BadResidue code BAD_PEPTIDE in next template residue (2nadA)L70 Warning: unaligning (T0294)Q33 because of BadResidue code BAD_PEPTIDE at template residue (2nadA)L70 T0294 25 :RAADCEV 2nadA 62 :YLESNGH T0294 34 :WDSDEPIPAKELERGVAGAHGLLCLLSDH 2nadA 71 :VVTSDKDGPDSVFERELVDADVVISQPFW T0294 63 :VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 2nadA 102 :YLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD T0294 144 :LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQ 2nadA 182 :CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN T0294 197 :AEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 2nadA 236 :TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE Number of specific fragments extracted= 5 number of extra gaps= 1 total=1163 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wwkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wwkA expands to /projects/compbio/data/pdb/1wwk.pdb.gz 1wwkA:# T0294 read from 1wwkA/merged-good-all-a2m # 1wwkA read from 1wwkA/merged-good-all-a2m # adding 1wwkA to template set # found chain 1wwkA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1wwkA)M1 Warning: unaligning (T0294)G319 because last residue in template chain is (1wwkA)G304 T0294 8 :KVFVTRRIPAEGRVALAR 1wwkA 2 :KVLVAAPLHEKAIQVLKD T0294 27 :ADCEVEQ 1wwkA 20 :AGLEVIY T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1wwkA 27 :EEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1wwkA 62 :PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1wwkA 132 :AMGIELEGKTIGIIGFGRIGYQVAKIANALGM T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLR 1wwkA 164 :NILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=1169 Number of alignments=91 # 1wwkA read from 1wwkA/merged-good-all-a2m # found chain 1wwkA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1wwkA)M1 Warning: unaligning (T0294)G319 because last residue in template chain is (1wwkA)G304 T0294 8 :KVFVTRRIPAEGRVALARA 1wwkA 2 :KVLVAAPLHEKAIQVLKDA T0294 28 :DCEVEQWD 1wwkA 21 :GLEVIYEE T0294 39 :PIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1wwkA 29 :YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1wwkA 62 :PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1wwkA 132 :AMGIELEGKTIGIIGFGRIGYQVAKIANALGM T0294 179 :RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLR 1wwkA 164 :NILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILK Number of specific fragments extracted= 6 number of extra gaps= 0 total=1175 Number of alignments=92 # 1wwkA read from 1wwkA/merged-good-all-a2m # found chain 1wwkA in template set Warning: unaligning (T0294)G319 because last residue in template chain is (1wwkA)G304 T0294 20 :RVALARAADCEVEQWDSDE 1wwkA 11 :EKAIQVLKDAGLEVIYEEY T0294 41 :PAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK 1wwkA 30 :PDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1wwkA 132 :AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA T0294 193 :AEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLR 1wwkA 178 :KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILK Number of specific fragments extracted= 4 number of extra gaps= 0 total=1179 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vl6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vl6A expands to /projects/compbio/data/pdb/1vl6.pdb.gz 1vl6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 737, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 739, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 741, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 743, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 745, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 747, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 749, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 751, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 753, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 755, because occupancy 0.400 <= existing 0.600 in 1vl6A Skipped atom 757, because occupancy 0.400 <= existing 0.600 in 1vl6A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2670, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2672, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2674, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2676, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2678, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2680, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2682, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2684, because occupancy 0.500 <= existing 0.500 in 1vl6A Skipped atom 2686, because occupancy 0.500 <= existing 0.500 in 1vl6A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1vl6A/merged-good-all-a2m # 1vl6A read from 1vl6A/merged-good-all-a2m # adding 1vl6A to template set # found chain 1vl6A in template set T0294 6 :L 1vl6A 58 :N T0294 8 :KVFVTR 1vl6A 59 :TVAVVS T0294 14 :RIPAEG 1vl6A 74 :NIGPYG T0294 20 :RVALARAADCEVEQWDSD 1vl6A 88 :AFLFKAFADIDAFPICLS T0294 39 :PIPAKELERG 1vl6A 106 :ESEEEKIISI T0294 68 :LDAAGANLKVISTMSVGIDHLA 1vl6A 116 :VKSLEPSFGGINLEDIGAPKCF T0294 90 :LDEIKK 1vl6A 140 :LQRLSE T0294 96 :RGIRVGY 1vl6A 147 :MNIPVFH T0294 108 :TDTTAELAVSLLLTTCR 1vl6A 156 :QQGTAVVVSAAFLNALK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 1vl6A 173 :LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK T0294 187 :PRPEEAAE 1vl6A 224 :CLNEYHLE T0294 195 :F 1vl6A 236 :T T0294 196 :QAEFV 1vl6A 238 :PERLS T0294 201 :STPELAAQSDFIVVACSL 1vl6A 244 :DLETALEGADFFIGVSRG T0294 224 :GLCNKDFFQKMKETAVFINISRGDV 1vl6A 262 :NILKPEWIKKMSRKPVIFALANPVP T0294 249 :VNQDDLYQ 1vl6A 288 :IDPELARE T0294 261 :GKIAAAGLDVTSPEPLPTN 1vl6A 296 :AGAFIVATGRSDHPNQVNN T0294 281 :PLL 1vl6A 315 :LLA T0294 295 :GSATHRTR 1vl6A 319 :PGIMKGAV T0294 303 :NTMSLLAANNLLAGL 1vl6A 334 :KNMLLSAVEAIARSC T0294 320 :E 1vl6A 349 :E Number of specific fragments extracted= 21 number of extra gaps= 0 total=1200 Number of alignments=94 # 1vl6A read from 1vl6A/merged-good-all-a2m # found chain 1vl6A in template set T0294 5 :RLMKVFVTR 1vl6A 58 :NTVAVVSDG T0294 14 :RIP 1vl6A 74 :NIG T0294 17 :AEGRVALARAADCEVEQWDSD 1vl6A 85 :EGKAFLFKAFADIDAFPICLS T0294 39 :PIPAKELERG 1vl6A 106 :ESEEEKIISI T0294 68 :LDAAGANLKVISTMSVGIDHLA 1vl6A 116 :VKSLEPSFGGINLEDIGAPKCF T0294 90 :LDEIKKR 1vl6A 140 :LQRLSEE T0294 97 :GIRVGY 1vl6A 148 :NIPVFH T0294 108 :TDTTAELAVSLLLTTCR 1vl6A 156 :QQGTAVVVSAAFLNALK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 1vl6A 173 :LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK T0294 194 :E 1vl6A 239 :E T0294 198 :EFV 1vl6A 240 :RLS T0294 201 :STPELAAQSDFIVVACSLT 1vl6A 244 :DLETALEGADFFIGVSRGN T0294 225 :LCNKDFFQKMKETAVFINISRGDV 1vl6A 263 :ILKPEWIKKMSRKPVIFALANPVP T0294 249 :VNQDDLYQ 1vl6A 288 :IDPELARE T0294 260 :SG 1vl6A 296 :AG T0294 263 :IAAAGLD 1vl6A 298 :AFIVATG T0294 271 :TSPEPLPTNHPLL 1vl6A 305 :RSDHPNQVNNLLA T0294 296 :SATHRTR 1vl6A 320 :GIMKGAV T0294 303 :NTMSLLAANNLLAGL 1vl6A 334 :KNMLLSAVEAIARSC Number of specific fragments extracted= 19 number of extra gaps= 0 total=1219 Number of alignments=95 # 1vl6A read from 1vl6A/merged-good-all-a2m # found chain 1vl6A in template set T0294 44 :ELERGVAGAHGLLCLLSDHVDKRILD 1vl6A 88 :AFLFKAFADIDAFPICLSESEEEKII T0294 70 :AAGANLKVISTMSVGIDHL 1vl6A 118 :SLEPSFGGINLEDIGAPKC T0294 89 :ALDEIKK 1vl6A 139 :ILQRLSE T0294 96 :RGIRVGY 1vl6A 147 :MNIPVFH T0294 108 :TDTTAELAVSLLLTTCRR 1vl6A 156 :QQGTAVVVSAAFLNALKL T0294 147 :CGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1vl6A 174 :TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGV T0294 178 :QRFLYTGRQ 1vl6A 206 :NVVAVDRKG T0294 188 :RPEE 1vl6A 216 :LNEN T0294 195 :FQAEFVSTPELAAQSDFIVVACSLT 1vl6A 238 :PERLSGDLETALEGADFFIGVSRGN T0294 225 :LCNKDFFQKMKETAVFINISRG 1vl6A 263 :ILKPEWIKKMSRKPVIFALANP T0294 247 :DVVNQDDLYQ 1vl6A 286 :PEIDPELARE T0294 261 :GKIAAAGLD 1vl6A 296 :AGAFIVATG T0294 277 :PTNH 1vl6A 305 :RSDH T0294 303 :NTMSLLAANNLLAGL 1vl6A 334 :KNMLLSAVEAIARSC Number of specific fragments extracted= 14 number of extra gaps= 0 total=1233 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a4iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0294 read from 1a4iA/merged-good-all-a2m # 1a4iA read from 1a4iA/merged-good-all-a2m # found chain 1a4iA in training set Warning: unaligning (T0294)P104 because of BadResidue code BAD_PEPTIDE in next template residue (1a4iA)D142 Warning: unaligning (T0294)D105 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)D142 Warning: unaligning (T0294)V106 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)C143 Warning: unaligning (T0294)R318 because last residue in template chain is (1a4iA)E296 T0294 3 :PVRLMKV 1a4iA 32 :PGFTPRL T0294 10 :FVTRRIPAEGRVALA 1a4iA 40 :ILQVGNRDDSNLYIN T0294 25 :RAADCEVEQWDSDEPIPAKELERGV 1a4iA 61 :EEIGIKATHIKLPRTTTESEVMKYI T0294 50 :AGAHGLLCL 1a4iA 92 :STVHGFLVQ T0294 59 :LSDHVD 1a4iA 105 :SENSIN T0294 65 :KRILDAAGA 1a4iA 112 :EEVINAIAP T0294 84 :GIDHLA 1a4iA 123 :DVDGLT T0294 90 :LDEIKKR 1a4iA 132 :AGRLARG T0294 102 :YT 1a4iA 139 :DL T0294 107 :LTDTTAELAVSLL 1a4iA 144 :FIPCTPKGCLELI T0294 124 :R 1a4iA 157 :K T0294 146 :LCGYGLTQSTVGIIGLGR 1a4iA 158 :ETGVPIAGRHAVVVGRSK T0294 164 :IGQAIARRLKPFGV 1a4iA 177 :VGAPMHDLLLWNNA T0294 179 :RFLYTGRQ 1a4iA 191 :TVTTCHSK T0294 199 :FVSTPELAAQSDFIVVAC 1a4iA 199 :TAHLDEEVNKGDILVVAT T0294 221 :ATEGLCNKDF 1a4iA 217 :GQPEMVKGEW T0294 234 :MKETAVFINISRG 1a4iA 227 :IKPGAIVIDCGIN T0294 247 :DVVNQDDL 1a4iA 254 :GDVAYDEA T0294 260 :SG 1a4iA 262 :KE T0294 284 :TLK 1a4iA 264 :RAS T0294 289 :VILPHIGSATHRTRNTMSLLAANNLLAGL 1a4iA 267 :FITPVPGGVGPMTVAMLMQSTVESAKRFL Number of specific fragments extracted= 21 number of extra gaps= 1 total=1254 Number of alignments=97 # 1a4iA read from 1a4iA/merged-good-all-a2m # found chain 1a4iA in training set Warning: unaligning (T0294)P104 because of BadResidue code BAD_PEPTIDE in next template residue (1a4iA)D142 Warning: unaligning (T0294)D105 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)D142 Warning: unaligning (T0294)V106 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)C143 Warning: unaligning (T0294)G246 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a4iA)K251 Warning: unaligning (T0294)R318 because last residue in template chain is (1a4iA)E296 T0294 2 :RPVRLMKVFVTRRIP 1a4iA 33 :GFTPRLAILQVGNRD T0294 17 :AEGRVALARAA 1a4iA 50 :NLYINVKLKAA T0294 28 :DCEVEQWDSDEPIPAKELERGV 1a4iA 64 :GIKATHIKLPRTTTESEVMKYI T0294 50 :AGAHGLLCL 1a4iA 92 :STVHGFLVQ T0294 59 :LSDHVD 1a4iA 105 :SENSIN T0294 65 :KRILDAAGA 1a4iA 112 :EEVINAIAP T0294 83 :VGIDHLA 1a4iA 122 :KDVDGLT T0294 90 :LDEIKKRG 1a4iA 132 :AGRLARGD T0294 103 :T 1a4iA 140 :L T0294 107 :LTDTTAELAVSLL 1a4iA 144 :FIPCTPKGCLELI T0294 124 :R 1a4iA 157 :K T0294 146 :LCGYGLTQSTVGIIG 1a4iA 158 :ETGVPIAGRHAVVVG T0294 162 :GRIGQAIARRLKPFGV 1a4iA 175 :KIVGAPMHDLLLWNNA T0294 179 :RFLYTGRQ 1a4iA 191 :TVTTCHSK T0294 199 :FVSTPELAAQSDFIVVAC 1a4iA 199 :TAHLDEEVNKGDILVVAT T0294 221 :ATEGLCNKDF 1a4iA 217 :GQPEMVKGEW T0294 234 :MKETAVFINIS 1a4iA 227 :IKPGAIVIDCG T0294 249 :VNQDDL 1a4iA 256 :VAYDEA T0294 260 :SGKIA 1a4iA 262 :KERAS T0294 289 :VILPHIGSATHRTRNTMSLLAANNLLAGL 1a4iA 267 :FITPVPGGVGPMTVAMLMQSTVESAKRFL Number of specific fragments extracted= 20 number of extra gaps= 1 total=1274 Number of alignments=98 # 1a4iA read from 1a4iA/merged-good-all-a2m # found chain 1a4iA in training set Warning: unaligning (T0294)P104 because of BadResidue code BAD_PEPTIDE in next template residue (1a4iA)D142 Warning: unaligning (T0294)D105 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)D142 Warning: unaligning (T0294)V106 because of BadResidue code BAD_PEPTIDE at template residue (1a4iA)C143 Warning: unaligning (T0294)D247 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a4iA)K251 Warning: unaligning (T0294)R318 because last residue in template chain is (1a4iA)E296 T0294 25 :RAADCEVEQWDSDEPIPAKELERGV 1a4iA 61 :EEIGIKATHIKLPRTTTESEVMKYI T0294 50 :AGAHGLLCLLSD 1a4iA 91 :DSTVHGFLVQLP T0294 62 :HVDKRILDAAGAN 1a4iA 108 :SINTEEVINAIAP T0294 83 :VGIDHL 1a4iA 122 :KDVDGL T0294 89 :ALDEIKKRGI 1a4iA 131 :NAGRLARGDL T0294 107 :LTDTTAELAVSLL 1a4iA 144 :FIPCTPKGCLELI T0294 124 :R 1a4iA 157 :K T0294 146 :LCGYGLTQSTVGIIGLGR 1a4iA 158 :ETGVPIAGRHAVVVGRSK T0294 164 :IGQAIARRLKPFGVQRFLYTGR 1a4iA 177 :VGAPMHDLLLWNNATVTTCHSK T0294 199 :FVSTPELAAQSDFIVVACSL 1a4iA 199 :TAHLDEEVNKGDILVVATGQ T0294 220 :P 1a4iA 219 :P T0294 224 :GLCNKDF 1a4iA 220 :EMVKGEW T0294 234 :MKETAVFINISRG 1a4iA 227 :IKPGAIVIDCGIN T0294 289 :VILPHIGSATHRTRNTMSLLAANNLLAGL 1a4iA 267 :FITPVPGGVGPMTVAMLMQSTVESAKRFL Number of specific fragments extracted= 14 number of extra gaps= 1 total=1288 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ww8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ww8A expands to /projects/compbio/data/pdb/1ww8.pdb.gz 1ww8A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1ww8A/merged-good-all-a2m # 1ww8A read from 1ww8A/merged-good-all-a2m # adding 1ww8A to template set # found chain 1ww8A in template set T0294 4 :VRLMKVFVTRRI 1ww8A 62 :KGNLVAVVSDGS T0294 17 :AEG 1ww8A 83 :PLA T0294 20 :RVALARAADCEVEQWDSDEPIP 1ww8A 94 :ALLFKRFGGVDAFPIMIKEQEP T0294 42 :AKELERGVAGAHGLLCLLSD 1ww8A 119 :IDIVKAIAPTFGGINLEDIA T0294 66 :RILDAA 1ww8A 144 :YILERL T0294 93 :IKKRGIRVGY 1ww8A 150 :REELDIPVFH T0294 108 :TDTTAELAVSLLLTTCR 1ww8A 162 :QQGTAAVVLAGLLNALK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 1ww8A 179 :VVGKKISEITLALFGAGAAGFATLRILTEAGVK T0294 179 :RFLYT 1ww8A 214 :NVRVV T0294 184 :GRQPRPEEAAE 1ww8A 229 :TSDLDLEKLFP T0294 195 :F 1ww8A 248 :T T0294 196 :QAEFV 1ww8A 250 :GENIE T0294 201 :STPELAAQSDFIVVACSLTPA 1ww8A 256 :GPQEALKDADVLISFTRPGPG T0294 225 :LCNKDFFQKMKETAVFINISRGDV 1ww8A 277 :VIKPQWIEKMNEDAIVFPLANPVP T0294 249 :VNQDDLYQA 1ww8A 302 :ILPEEAKKA T0294 265 :AAGLDVT 1ww8A 311 :GARIVAT T0294 273 :PE 1ww8A 318 :GR T0294 275 :PLPTNH 1ww8A 372 :IPSPLN T0294 299 :HRTRNTMSLLAANNLLAG 1ww8A 378 :PIVYAREARAVAEEAMKE Number of specific fragments extracted= 19 number of extra gaps= 0 total=1307 Number of alignments=100 # 1ww8A read from 1ww8A/merged-good-all-a2m # found chain 1ww8A in template set T0294 5 :RLMKVFVTRRI 1ww8A 64 :NLVAVVSDGSR T0294 17 :AEGRVALARAADCEVEQWDSDEPIPA 1ww8A 91 :EGKALLFKRFGGVDAFPIMIKEQEPN T0294 43 :KELERGVAGAHGLLCLLSD 1ww8A 120 :DIVKAIAPTFGGINLEDIA T0294 66 :RILDAA 1ww8A 144 :YILERL T0294 93 :IKKRGIRVGY 1ww8A 150 :REELDIPVFH T0294 108 :TDTTAELAVSLLLTTCR 1ww8A 162 :QQGTAAVVLAGLLNALK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 1ww8A 179 :VVGKKISEITLALFGAGAAGFATLRILTEAGVK T0294 179 :RFLYT 1ww8A 214 :NVRVV T0294 184 :GRQPRPEEA 1ww8A 229 :TSDLDLEKL T0294 193 :AE 1ww8A 250 :GE T0294 198 :EFV 1ww8A 252 :NIE T0294 201 :STPELAAQSDFIVVACSLTPA 1ww8A 256 :GPQEALKDADVLISFTRPGPG T0294 225 :LCNKDFFQKMKETAVFINISRGDV 1ww8A 277 :VIKPQWIEKMNEDAIVFPLANPVP T0294 249 :VNQDDLYQ 1ww8A 302 :ILPEEAKK T0294 261 :GKIA 1ww8A 310 :AGAR T0294 266 :AGLDVTSPEPLPTNHPL 1ww8A 314 :IVATGRSDYPNQINNLL T0294 283 :LTL 1ww8A 345 :RTI T0294 298 :T 1ww8A 348 :T T0294 303 :NTMSLLAANNLLAGLRGEP 1ww8A 349 :DSMIIAAAKAIASIVEEPS Number of specific fragments extracted= 19 number of extra gaps= 0 total=1326 Number of alignments=101 # 1ww8A read from 1ww8A/merged-good-all-a2m # found chain 1ww8A in template set T0294 45 :LERGVAGAHGLLCLLSDHVDKRILD 1ww8A 95 :LLFKRFGGVDAFPIMIKEQEPNKFI T0294 70 :AAGANLKVISTMSVGIDHL 1ww8A 124 :AIAPTFGGINLEDIASPKC T0294 89 :ALDEIKK 1ww8A 145 :ILERLRE T0294 96 :RGIRVGY 1ww8A 153 :LDIPVFH T0294 107 :LTDTTAELAVSLLLTTCR 1ww8A 161 :DQQGTAAVVLAGLLNALK T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLK 1ww8A 179 :VVGKKISEITLALFGAGAAGFATLRILT T0294 174 :PFGVQRF 1ww8A 212 :PENVRVV T0294 181 :LYTGRQPRPEE 1ww8A 227 :ILTSDLDLEKL T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPA 1ww8A 250 :GENIEGGPQEALKDADVLISFTRPGPG T0294 225 :LCNKDFFQKMKETAVFINISRG 1ww8A 277 :VIKPQWIEKMNEDAIVFPLANP T0294 247 :DVVNQDDLYQ 1ww8A 300 :PEILPEEAKK T0294 261 :GKIAAAG 1ww8A 310 :AGARIVA T0294 275 :PLPTNH 1ww8A 317 :TGRSDY T0294 281 :PLLTLK 1ww8A 343 :RARTIT T0294 303 :NTMSLLAANNLLAGLRGEP 1ww8A 349 :DSMIIAAAKAIASIVEEPS Number of specific fragments extracted= 15 number of extra gaps= 0 total=1341 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d5cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d5cA expands to /projects/compbio/data/pdb/2d5c.pdb.gz 2d5cA:# T0294 read from 2d5cA/merged-good-all-a2m # 2d5cA read from 2d5cA/merged-good-all-a2m # adding 2d5cA to template set # found chain 2d5cA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2d5cA)M1 T0294 7 :MKVFVTRR 2d5cA 2 :LRFAVLGH T0294 15 :IP 2d5cA 11 :VA T0294 17 :AEGRVALARAADC 2d5cA 17 :PAMHAFALESLGL T0294 30 :EVEQWDS 2d5cA 32 :SYEAWDT T0294 41 :PAKEL 2d5cA 39 :PLEAL T0294 65 :KRILDAAGANLKVISTMS 2d5cA 44 :PGRLKEVRRAFRGVNLTL T0294 83 :VGIDHLA 2d5cA 66 :AALAHLD T0294 90 :LDEIKKR 2d5cA 75 :SPEAQRI T0294 100 :VGYT 2d5cA 96 :GFNT T0294 115 :AVSLLLTTCR 2d5cA 100 :DAPGFLEALK T0294 146 :LCGYGLTQ 2d5cA 110 :AGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 2d5cA 118 :PALVLGAGGAGRAVAFALREAGL T0294 179 :RFLYTGRQPRP 2d5cA 141 :EVWVWNRTPQR T0294 190 :EEAAEFQAEFVSTPE 2d5cA 154 :ALAEEFGLRAVPLEK T0294 206 :AAQSDFIVVAC 2d5cA 169 :AREARLLVNAT T0294 217 :SLTPA 2d5cA 190 :PLPAE T0294 233 :KMKETAVFINISRGDVVNQ 2d5cA 195 :LFPEEGAAVDLVYRPLWTR T0294 254 :LYQALASGKIAA 2d5cA 214 :FLREAKAKGLKV T0294 271 :TSP 2d5cA 226 :QTG T0294 303 :NTMSLLAANNLLAGLRGEPMP 2d5cA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 20 number of extra gaps= 0 total=1361 Number of alignments=103 # 2d5cA read from 2d5cA/merged-good-all-a2m # found chain 2d5cA in template set Warning: unaligning (T0294)L6 because first residue in template chain is (2d5cA)M1 T0294 7 :MKVFVTRRIP 2d5cA 2 :LRFAVLGHPV T0294 17 :AEGRVALARAADC 2d5cA 17 :PAMHAFALESLGL T0294 30 :EVEQWD 2d5cA 32 :SYEAWD T0294 40 :IPAKEL 2d5cA 38 :TPLEAL T0294 65 :KRILDAAGANLKVISTMS 2d5cA 44 :PGRLKEVRRAFRGVNLTL T0294 83 :VGIDHLA 2d5cA 66 :AALAHLD T0294 90 :LDEIKKRGI 2d5cA 75 :SPEAQRIGA T0294 99 :RVGYT 2d5cA 95 :FGFNT T0294 108 :TDTT 2d5cA 100 :DAPG T0294 116 :VSLLL 2d5cA 104 :FLEAL T0294 134 :KNGGWTSWK 2d5cA 109 :KAGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGV 2d5cA 118 :PALVLGAGGAGRAVAFALREAGL T0294 179 :RFLYTGRQPR 2d5cA 141 :EVWVWNRTPQ T0294 189 :PEEAAEFQAEFVSTPE 2d5cA 153 :LALAEEFGLRAVPLEK T0294 206 :AAQSDFIVVAC 2d5cA 169 :AREARLLVNAT T0294 217 :SLTPA 2d5cA 190 :PLPAE T0294 233 :KMKETAVFINISRGDVVNQ 2d5cA 195 :LFPEEGAAVDLVYRPLWTR T0294 254 :LYQALASGKIAA 2d5cA 214 :FLREAKAKGLKV T0294 271 :TSP 2d5cA 226 :QTG T0294 303 :NTMSLLAANNLLAGLRGEPMP 2d5cA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 20 number of extra gaps= 0 total=1381 Number of alignments=104 # 2d5cA read from 2d5cA/merged-good-all-a2m # found chain 2d5cA in template set T0294 23 :LARAADCE 2d5cA 23 :ALESLGLE T0294 31 :VEQWDSDEPIPAKELERG 2d5cA 33 :YEAWDTPLEALPGRLKEV T0294 50 :AGAHGLLCLLSDHVD 2d5cA 51 :RRAFRGVNLTLPLKE T0294 70 :AAGAN 2d5cA 66 :AALAH T0294 85 :IDHL 2d5cA 71 :LDWV T0294 90 :LDEIKKRGIR 2d5cA 75 :SPEAQRIGAV T0294 105 :DVLTDTTAEL 2d5cA 98 :NTDAPGFLEA T0294 133 :VKNGGWTSWK 2d5cA 108 :LKAGGIPLKG T0294 155 :TVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 2d5cA 118 :PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALA T0294 192 :AAEFQAEFVSTPE 2d5cA 156 :AEEFGLRAVPLEK T0294 206 :AAQSDFIVVAC 2d5cA 169 :AREARLLVNAT T0294 217 :SLTPA 2d5cA 190 :PLPAE T0294 233 :KMKETAVFINISRGDVVNQ 2d5cA 195 :LFPEEGAAVDLVYRPLWTR T0294 254 :LYQALASGKIAA 2d5cA 214 :FLREAKAKGLKV T0294 289 :V 2d5cA 226 :Q T0294 303 :NTMSLLAANNLLAGLRGEPMP 2d5cA 229 :LPMLAWQGALAFRLWTGLLPD Number of specific fragments extracted= 16 number of extra gaps= 0 total=1397 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d4fA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d4fA expands to /projects/compbio/data/pdb/1d4f.pdb.gz 1d4fA:# T0294 read from 1d4fA/merged-good-all-a2m # 1d4fA read from 1d4fA/merged-good-all-a2m # adding 1d4fA to template set # found chain 1d4fA in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1d4fA 41 :SKPLKGARIAGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGV 1d4fA 61 :VLIETLVALGAEVRWSSCNIFSTQDHAAAAI T0294 50 :AGAHG 1d4fA 94 :AGIPV T0294 57 :CLLSDHVDKRILDAAG 1d4fA 99 :FAWKGETDEEYLWCIE T0294 74 :NLKVIST 1d4fA 123 :PLNMILD T0294 83 :VGIDHLA 1d4fA 130 :DGGDLTN T0294 92 :EIKKR 1d4fA 137 :LIHTK T0294 97 :GIRVGYTPDVLT 1d4fA 173 :KVPAINVNDSVT T0294 124 :RRLPEAIEEVKNGGWTSWKP 1d4fA 185 :KSKFDNLYGCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1d4fA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPRPEE 1d4fA 237 :RVIITEIEPINAL T0294 192 :AAEFQAEFVSTPELAAQSDFIVVAC 1d4fA 251 :AAMEGYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1d4fA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDL 1d4fA 305 :IDVKWL T0294 259 :ASGKI 1d4fA 311 :NENAV T0294 264 :AAAGLDVTS 1d4fA 320 :IKPQVDRYL T0294 277 :PTNH 1d4fA 329 :LKNG T0294 281 :PL 1d4fA 342 :RL T0294 292 :PHIGSATHRTRNTMSLLAANNLL 1d4fA 351 :GHPSFVMSNSFTNQVMAQIELWT Number of specific fragments extracted= 19 number of extra gaps= 0 total=1416 Number of alignments=106 # 1d4fA read from 1d4fA/merged-good-all-a2m # found chain 1d4fA in template set T0294 7 :MKVFVTR 1d4fA 71 :AEVRWSS T0294 14 :RIPAEGRVALARA 1d4fA 82 :STQDHAAAAIAKA T0294 28 :DCEVEQWD 1d4fA 95 :GIPVFAWK T0294 39 :PIPAKELERGVAG 1d4fA 103 :GETDEEYLWCIEQ T0294 52 :AHGLLCLLS 1d4fA 124 :LNMILDDGG T0294 66 :RILDAA 1d4fA 133 :DLTNLI T0294 73 :ANLKVISTMS 1d4fA 147 :SGIRGISEET T0294 90 :LDEIKKR 1d4fA 160 :VHNLYKM T0294 97 :G 1d4fA 170 :G T0294 98 :IRVGYTPDV 1d4fA 174 :VPAINVNDS T0294 107 :LTDTTAELAVSLLLT 1d4fA 190 :NLYGCRESLIDGIKR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1d4fA 205 :ATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA T0294 179 :RFLYTGRQPR 1d4fA 237 :RVIITEIEPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVAC 1d4fA 248 :ALQAAMEGYEVTTMDEACKEGNIFVTTT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1d4fA 276 :GCVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDLY 1d4fA 305 :IDVKWLN Number of specific fragments extracted= 16 number of extra gaps= 0 total=1432 Number of alignments=107 # 1d4fA read from 1d4fA/merged-good-all-a2m # found chain 1d4fA in template set T0294 36 :SDEPIPAKELERGVAGAHGL 1d4fA 100 :AWKGETDEEYLWCIEQTLHF T0294 56 :LCLLSDHVDKRILDAAGA 1d4fA 126 :MILDDGGDLTNLIHTKHP T0294 74 :NLKVISTMS 1d4fA 148 :GIRGISEET T0294 90 :LDEIKK 1d4fA 160 :VHNLYK T0294 96 :RG 1d4fA 169 :NG T0294 98 :IRVGYTPDVLT 1d4fA 174 :VPAINVNDSVT T0294 109 :DTTAELAVSLLLTTC 1d4fA 192 :YGCRESLIDGIKRAT T0294 148 :GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACS 1d4fA 207 :DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACKEGNIFVTTTG T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 1d4fA 277 :CVDIILGRHFEQMKDDAIVCNIGHFDV T0294 249 :VNQDDL 1d4fA 305 :IDVKWL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1442 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1np3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1np3A expands to /projects/compbio/data/pdb/1np3.pdb.gz 1np3A:# T0294 read from 1np3A/merged-good-all-a2m # 1np3A read from 1np3A/merged-good-all-a2m # adding 1np3A to template set # found chain 1np3A in template set T0294 153 :QSTVGIIGLGRIGQAIARRLKPFGV 1np3A 16 :GKKVAIIGYGSQGHAHACNLKDSGV T0294 179 :RFLYTGRQPRP 1np3A 41 :DVTVGLRSGSA T0294 190 :EEAAEFQAEFVSTPELAAQSDFIVVACS 1np3A 54 :AKAEAHGLKVADVKTAVAAADVVMILTP T0294 221 :ATEGLCNKDFFQK 1np3A 83 :EFQGRLYKEEIEP T0294 234 :MKETAVFI 1np3A 97 :LKKGATLA T0294 243 :ISRG 1np3A 105 :FAHG T0294 247 :DV 1np3A 123 :DV T0294 249 :VNQDDLYQALASGKIAAAGLDVTSPE 1np3A 131 :APGHTVRSEFVKGGGIPDLIAIYQDA T0294 298 :THRTRNTMS 1np3A 188 :ETDLFGEQA T0294 307 :LLAANNLLAGLRGEP 1np3A 204 :ELVKAGFETLVEAGY Number of specific fragments extracted= 10 number of extra gaps= 0 total=1452 Number of alignments=109 # 1np3A read from 1np3A/merged-good-all-a2m # found chain 1np3A in template set T0294 153 :QSTVGIIGLGRIGQAIARRLKPFGV 1np3A 16 :GKKVAIIGYGSQGHAHACNLKDSGV T0294 179 :RFLYTGRQPR 1np3A 41 :DVTVGLRSGS T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVACS 1np3A 53 :VAKAEAHGLKVADVKTAVAAADVVMILTP T0294 223 :EGLCNKDFF 1np3A 85 :QGRLYKEEI T0294 232 :QKMKETAVFI 1np3A 95 :PNLKKGATLA T0294 243 :ISRG 1np3A 105 :FAHG T0294 247 :DV 1np3A 123 :DV T0294 249 :VNQDDLYQALASGKIAAAGLDVTSPE 1np3A 131 :APGHTVRSEFVKGGGIPDLIAIYQDA T0294 298 :THRTRNTMS 1np3A 188 :ETDLFGEQA T0294 307 :LLAANNLLAGLRGEP 1np3A 204 :ELVKAGFETLVEAGY Number of specific fragments extracted= 10 number of extra gaps= 0 total=1462 Number of alignments=110 # 1np3A read from 1np3A/merged-good-all-a2m # found chain 1np3A in template set T0294 153 :QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 1np3A 16 :GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSA T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVACS 1np3A 53 :VAKAEAHGLKVADVKTAVAAADVVMILTP T0294 221 :ATEGLCNKDFFQ 1np3A 83 :EFQGRLYKEEIE T0294 233 :KMKETAVFINI 1np3A 96 :NLKKGATLAFA T0294 249 :VNQDDLYQALASGKIAAAGLDVTSPEPL 1np3A 131 :APGHTVRSEFVKGGGIPDLIAIYQDASG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1467 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bw9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bw9A expands to /projects/compbio/data/pdb/1bw9.pdb.gz 1bw9A:Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 73, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 75, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 416, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 670, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 674, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 830, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 832, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 932, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 1892, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 1894, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 1896, because occupancy 0.500 <= existing 0.500 in 1bw9A Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 1bw9A # T0294 read from 1bw9A/merged-good-all-a2m # 1bw9A read from 1bw9A/merged-good-all-a2m # adding 1bw9A to template set # found chain 1bw9A in template set T0294 7 :MKV 1bw9A 74 :MGG T0294 10 :FVTRR 1bw9A 80 :VIALP T0294 15 :IPAEGRVALARA 1bw9A 90 :IDPSTWARILRI T0294 45 :LERG 1bw9A 102 :HAEN T0294 68 :LDAAGAN 1bw9A 106 :IDKLSGN T0294 81 :MSVGID 1bw9A 113 :YWTGPD T0294 87 :HLALDEIKKR 1bw9A 120 :NTNSADMDTL T0294 97 :GI 1bw9A 144 :GG T0294 104 :PDVLTDTTAELAVSLLLTTCR 1bw9A 146 :AGSSAFTTAVGVFEAMKATVA T0294 146 :LCGY 1bw9A 167 :HRGL T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1bw9A 172 :SLDGLTVLVQGLGAVGGSLASLAAEAGA T0294 179 :RFLYTGRQP 1bw9A 200 :QLLVADTDT T0294 188 :RPEEAAEFQAEFVSTPELAAQ 1bw9A 210 :RVAHAVALGHTAVALEDVLST T0294 209 :SDFIVVACSLT 1bw9A 232 :CDVFAPCAMGG T0294 225 :LCNKDFFQKMK 1bw9A 243 :VITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1bw9A 254 :CSVVAGAANNVIADEAASDILHARGILYA Number of specific fragments extracted= 16 number of extra gaps= 0 total=1483 Number of alignments=112 # 1bw9A read from 1bw9A/merged-good-all-a2m # found chain 1bw9A in template set T0294 9 :VFVTR 1bw9A 80 :VIALP T0294 15 :IPAEGRVALARAA 1bw9A 90 :IDPSTWARILRIH T0294 42 :AKELERGVAGAHG 1bw9A 103 :AENIDKLSGNYWT T0294 59 :LSDHVDKRILDAA 1bw9A 117 :PDVNTNSADMDTL T0294 95 :KRGI 1bw9A 142 :ERGG T0294 104 :PDVLTDTTAELAVSLLLTTCRR 1bw9A 146 :AGSSAFTTAVGVFEAMKATVAH T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1bw9A 168 :RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGA T0294 179 :RFLYTGRQPR 1bw9A 200 :QLLVADTDTE T0294 189 :PEEAAEFQAEFVSTPELAAQ 1bw9A 211 :VAHAVALGHTAVALEDVLST T0294 209 :SDFIVVACSLT 1bw9A 232 :CDVFAPCAMGG T0294 225 :LCNKDFFQKMK 1bw9A 243 :VITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1bw9A 254 :CSVVAGAANNVIADEAASDILHARGILYA T0294 296 :SATHRTRNTMSLLAANNLLAGL 1bw9A 302 :GWSESVVHERAVAIGDTLNQVF Number of specific fragments extracted= 13 number of extra gaps= 0 total=1496 Number of alignments=113 # 1bw9A read from 1bw9A/merged-good-all-a2m # found chain 1bw9A in template set T0294 36 :SDEPIPAKELERGVAG 1bw9A 86 :PRHSIDPSTWARILRI T0294 64 :DKRILDAAGAN 1bw9A 102 :HAENIDKLSGN T0294 81 :MSVGID 1bw9A 113 :YWTGPD T0294 87 :HLALDEIK 1bw9A 120 :NTNSADMD T0294 95 :K 1bw9A 131 :D T0294 96 :RGI 1bw9A 143 :RGG T0294 104 :PDVLTDTTAELAVSLLLTTCRR 1bw9A 146 :AGSSAFTTAVGVFEAMKATVAH T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQ 1bw9A 168 :RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST T0294 209 :SDFIVVACSL 1bw9A 232 :CDVFAPCAMG T0294 224 :GLCNKDFFQKMK 1bw9A 242 :GVITTEVARTLD T0294 238 :AVFINISRGDVVNQDDLYQALASGKIAAA 1bw9A 254 :CSVVAGAANNVIADEAASDILHARGILYA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1507 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v8bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v8bA expands to /projects/compbio/data/pdb/1v8b.pdb.gz 1v8bA:# T0294 read from 1v8bA/merged-good-all-a2m # 1v8bA read from 1v8bA/merged-good-all-a2m # adding 1v8bA to template set # found chain 1v8bA in template set T0294 1 :SRPVRLMKVFVTRRIPAE 1v8bA 41 :DQPLKNAKITGCLHMTVE T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGVAGA 1v8bA 61 :LLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTL T0294 53 :HGLLCLLSDHVDKRILDAA 1v8bA 96 :NVTVFAWKNETLEEYWWCV T0294 73 :A 1v8bA 125 :D T0294 74 :NLKVIST 1v8bA 127 :GPDMIVD T0294 83 :VGIDHLAL 1v8bA 134 :DGGDATLL T0294 91 :DEIKKR 1v8bA 150 :KLYEEK T0294 98 :IRVGYTPDVLT 1v8bA 219 :FTAINVNDAVT T0294 109 :DTTAELAVSLLLTT 1v8bA 236 :VYGCRHSLPDGLMR T0294 146 :LCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1v8bA 250 :ATDFLISGKIVVICGYGDVGKGCASSMKGLGA T0294 179 :RFLYTGRQPRPEEAAEF 1v8bA 282 :RVYITEIDPICAIQAVM T0294 196 :QAEFVSTPELAAQSDFIVVAC 1v8bA 300 :GFNVVTLDEIVDKGDFFITCT T0294 221 :ATEGLCNKDFFQKMKETAVFINISRGDV 1v8bA 321 :GNVDVIKLEHLLKMKNNAVVGNIGHFDD T0294 249 :VNQDDLY 1v8bA 350 :IQVNELF T0294 261 :GKI 1v8bA 359 :KGI T0294 264 :AAAGLDVTS 1v8bA 366 :VKPQVDRIT T0294 276 :LPTNH 1v8bA 375 :LPNGN T0294 291 :LPHIGSATHRTRNTMSLLAA 1v8bA 396 :TGHPAFVMSFSFCNQTFAQL T0294 312 :NLLAGLRGEPMPSELK 1v8bA 416 :DLWQNKDTNKYENKVY Number of specific fragments extracted= 19 number of extra gaps= 0 total=1526 Number of alignments=115 # 1v8bA read from 1v8bA/merged-good-all-a2m # found chain 1v8bA in template set T0294 18 :EGRVALARAAD 1v8bA 29 :PGLMRIREEYG T0294 36 :SDE 1v8bA 40 :KDQ T0294 48 :GVAGAHGLLCLLSD 1v8bA 43 :PLKNAKITGCLHMT T0294 66 :RILDAA 1v8bA 64 :ETLQKL T0294 74 :NLKVISTMSVGIDHLA 1v8bA 70 :GAQIRWCSCNIYSTAD T0294 90 :LDEIKKR 1v8bA 88 :AAAVSTL T0294 97 :GIRVGYTPDVLTDTTAELAVS 1v8bA 96 :NVTVFAWKNETLEEYWWCVES T0294 118 :LLLTTCRRLPEAIEEVKNGGWTSWKP 1v8bA 137 :DATLLVHKGVEYEKLYEEKNILPDPE T0294 146 :L 1v8bA 163 :K T0294 151 :LTQSTVGIIGLGRIGQAIARRLKPFGV 1v8bA 255 :ISGKIVVICGYGDVGKGCASSMKGLGA T0294 179 :RFLYTGRQPR 1v8bA 282 :RVYITEIDPI T0294 189 :PEEAAEFQAEFVSTPELAAQSDFIVVAC 1v8bA 293 :AIQAVMEGFNVVTLDEIVDKGDFFITCT T0294 221 :ATEGLCNKDFFQKMKETAVFINISR 1v8bA 321 :GNVDVIKLEHLLKMKNNAVVGNIGH T0294 246 :GDVVNQDDLY 1v8bA 347 :DDEIQVNELF T0294 291 :LPHIGSATHRTRN 1v8bA 396 :TGHPAFVMSFSFC T0294 305 :MSLLAANNLLAGLRGEPMPSE 1v8bA 409 :NQTFAQLDLWQNKDTNKYENK Number of specific fragments extracted= 16 number of extra gaps= 0 total=1542 Number of alignments=116 # 1v8bA read from 1v8bA/merged-good-all-a2m # found chain 1v8bA in template set T0294 45 :LERGVAGA 1v8bA 175 :LLKNSILK T0294 64 :DKRILDAAGANLKVISTMS 1v8bA 183 :NPKKWTNIAKKIIGVSEET T0294 90 :LDEIKK 1v8bA 205 :VLRLKK T0294 96 :RG 1v8bA 214 :QN T0294 98 :IRVGYTPDVLT 1v8bA 219 :FTAINVNDAVT T0294 109 :DTTAELAVSLLLTTC 1v8bA 236 :VYGCRHSLPDGLMRA T0294 147 :CGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP 1v8bA 251 :TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVD T0294 225 :LCNKDFFQKMKETAVFINISR 1v8bA 325 :VIKLEHLLKMKNNAVVGNIGH T0294 246 :GDVVNQDDLY 1v8bA 347 :DDEIQVNELF T0294 280 :H 1v8bA 358 :Y T0294 292 :PHIGSATHR 1v8bA 397 :GHPAFVMSF T0294 302 :RNTMSLLAANNLLAGLRGEPMPSEL 1v8bA 406 :SFCNQTFAQLDLWQNKDTNKYENKV Number of specific fragments extracted= 12 number of extra gaps= 0 total=1554 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uufA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0294 read from 1uufA/merged-good-all-a2m # 1uufA read from 1uufA/merged-good-all-a2m # found chain 1uufA in training set T0294 115 :AVSLLLTTCRRL 1uufA 159 :AGITTYSPLRHW T0294 148 :GY 1uufA 171 :QA T0294 151 :LTQSTVGIIGLGRIGQAIARRLKPFGV 1uufA 173 :GPGKKVGVVGIGGLGHMGIKLAHAMGA T0294 179 :RFLYTGRQP 1uufA 200 :HVVAFTTSE T0294 188 :RPEEAAEFQAEFV 1uufA 210 :KREAAKALGADEV T0294 213 :VV 1uufA 223 :VN T0294 225 :LCNKDFFQKMKETAVFINISRGDVVNQDDLY 1uufA 225 :SRNADEMAAHLKSFDFILNTVAAPHNLDDFT T0294 281 :PLLTLKNCVIL 1uufA 256 :TLLKRDGTMTL T0294 296 :SATHRTRN 1uufA 295 :GGIPETQE T0294 305 :MSLLAANN 1uufA 303 :MLDFCAEH Number of specific fragments extracted= 10 number of extra gaps= 0 total=1564 Number of alignments=118 # 1uufA read from 1uufA/merged-good-all-a2m # found chain 1uufA in training set T0294 151 :LTQSTVGIIGLGRIGQAIARRLKPFGV 1uufA 173 :GPGKKVGVVGIGGLGHMGIKLAHAMGA T0294 179 :RFLYTGRQPR 1uufA 200 :HVVAFTTSEA T0294 189 :PEEAAEFQAEFV 1uufA 211 :REAAKALGADEV T0294 225 :LCNKDFFQKMKETAVFINISRGDVVNQDDLY 1uufA 225 :SRNADEMAAHLKSFDFILNTVAAPHNLDDFT T0294 281 :PLLTLKNCVIL 1uufA 256 :TLLKRDGTMTL T0294 296 :SATHRTRNTMSLLAANN 1uufA 294 :IGGIPETQEMLDFCAEH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1570 Number of alignments=119 # 1uufA read from 1uufA/merged-good-all-a2m # found chain 1uufA in training set T0294 115 :AVSLLLTTCRRL 1uufA 159 :AGITTYSPLRHW T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1uufA 171 :QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA T0294 202 :TPEL 1uufA 214 :AKAL T0294 208 :QSDFIVV 1uufA 218 :GADEVVN T0294 225 :L 1uufA 225 :S T0294 227 :NKDFFQKMKETAVFINISRGDVVNQDDLY 1uufA 227 :NADEMAAHLKSFDFILNTVAAPHNLDDFT T0294 281 :PLLTLKNCVIL 1uufA 256 :TLLKRDGTMTL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1577 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pjbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pjbA expands to /projects/compbio/data/pdb/1pjb.pdb.gz 1pjbA:# T0294 read from 1pjbA/merged-good-all-a2m # 1pjbA read from 1pjbA/merged-good-all-a2m # adding 1pjbA to template set # found chain 1pjbA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1pjbA)M1 Warning: unaligning (T0294)L218 because of BadResidue code BAD_PEPTIDE in next template residue (1pjbA)P241 Warning: unaligning (T0294)T219 because of BadResidue code BAD_PEPTIDE at template residue (1pjbA)P241 T0294 8 :KVFVTRR 1pjbA 2 :EIGVPKE T0294 15 :IPAEGRVALAR 1pjbA 18 :LSPSSVRTLVE T0294 27 :ADCEVEQWDSD 1pjbA 29 :AGHTVFIETQA T0294 39 :PIPAKELERG 1pjbA 44 :GFADQDYVQA T0294 51 :GAHGL 1pjbA 54 :GAQVV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1pjbA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTTCRRLPE 1pjbA 128 :LLTPMSIIAGRLSVQFGARFLE T0294 138 :WTSWKPLWLCGY 1pjbA 150 :RQQGGRGVLLGG T0294 150 :GLTQSTVGIIGLGRIGQAIARRLKPFGV 1pjbA 164 :GVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGR 1pjbA 192 :QVQIFDI T0294 188 :RPEEAAE 1pjbA 199 :NVERLSY T0294 196 :QAEFV 1pjbA 213 :RVELL T0294 201 :S 1pjbA 220 :N T0294 202 :TPELAAQSDFIVVACS 1pjbA 224 :IETAVAEADLLIGAVL T0294 220 :PA 1pjbA 242 :GR T0294 222 :TEGLCNKDFFQKMKETAVFINISRGDV 1pjbA 245 :APILVPASLVEQMRTGSVIVDVAVDQG T0294 270 :VTSPEPLPTNHPLLTLKNCVILP 1pjbA 274 :VETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjbA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 18 number of extra gaps= 1 total=1595 Number of alignments=121 # 1pjbA read from 1pjbA/merged-good-all-a2m # found chain 1pjbA in template set Warning: unaligning (T0294)M7 because first residue in template chain is (1pjbA)M1 Warning: unaligning (T0294)S217 because of BadResidue code BAD_PEPTIDE at template residue (1pjbA)P241 T0294 8 :KVFVTRR 1pjbA 2 :EIGVPKE T0294 15 :IPAEGRVALARA 1pjbA 18 :LSPSSVRTLVEA T0294 28 :DCEVEQWDS 1pjbA 30 :GHTVFIETQ T0294 39 :PIPAKELERG 1pjbA 44 :GFADQDYVQA T0294 51 :GAHGL 1pjbA 54 :GAQVV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDV 1pjbA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETV T0294 107 :LTDTTAELAVSLLLTT 1pjbA 128 :LLTPMSIIAGRLSVQF T0294 130 :IEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV 1pjbA 144 :GARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGA T0294 179 :RFLYTGRQPR 1pjbA 192 :QVQIFDINVE T0294 191 :EA 1pjbA 202 :RL T0294 193 :AEFQAEFVS 1pjbA 212 :SRVELLYSN T0294 202 :TPELAAQSDFIVVAC 1pjbA 224 :IETAVAEADLLIGAV T0294 218 :LTPATE 1pjbA 242 :GRRAPI T0294 225 :LCNKDFFQKMKETAVFINIS 1pjbA 248 :LVPASLVEQMRTGSVIVDVA T0294 245 :RGDVV 1pjbA 270 :QGGCV T0294 271 :TSPEPLPTNHPLLTLKNCVILP 1pjbA 275 :ETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjbA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 17 number of extra gaps= 1 total=1612 Number of alignments=122 # 1pjbA read from 1pjbA/merged-good-all-a2m # found chain 1pjbA in template set Warning: unaligning (T0294)L218 because of BadResidue code BAD_PEPTIDE in next template residue (1pjbA)P241 Warning: unaligning (T0294)T219 because of BadResidue code BAD_PEPTIDE at template residue (1pjbA)P241 T0294 24 :ARAADCEVEQWDSDE 1pjbA 24 :RTLVEAGHTVFIETQ T0294 39 :PIPAKELERGV 1pjbA 44 :GFADQDYVQAG T0294 53 :HGL 1pjbA 55 :AQV T0294 56 :LCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 1pjbA 69 :MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYE T0294 105 :DVLTDTTAELAVSLLLTTCRRLPEA 1pjbA 126 :LPLLTPMSIIAGRLSVQFGARFLER T0294 137 :GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR 1pjbA 151 :QQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN T0294 189 :PEE 1pjbA 200 :VER T0294 192 :AAEFQAEFVS 1pjbA 211 :GSRVELLYSN T0294 202 :TPELAAQSDFIVVACS 1pjbA 224 :IETAVAEADLLIGAVL T0294 220 :PA 1pjbA 242 :GR T0294 225 :LCNKDFFQKMKETAVFINISRGD 1pjbA 248 :LVPASLVEQMRTGSVIVDVAVDQ T0294 262 :KI 1pjbA 271 :GG T0294 270 :VTSPEPLPTNHPLLTLKNCVILP 1pjbA 274 :VETLHPTSHTQPTYEVFGVVHYG T0294 293 :HIGSATHRTRNTMSLLAANNLLAGL 1pjbA 300 :MPGAVPWTATQALNNSTLPYVVKLA Number of specific fragments extracted= 14 number of extra gaps= 1 total=1626 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sc6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sc6A expands to /projects/compbio/data/pdb/1sc6.pdb.gz 1sc6A:Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1sc6A Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1sc6A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0294 read from 1sc6A/merged-good-all-a2m # 1sc6A read from 1sc6A/merged-good-all-a2m # adding 1sc6A to template set # found chain 1sc6A in template set Warning: unaligning (T0294)P3 because first residue in template chain is (1sc6A)E7 Warning: unaligning (T0294)V4 because of BadResidue code BAD_PEPTIDE at template residue (1sc6A)K8 Warning: unaligning (T0294)T139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)S146 Warning: unaligning (T0294)G148 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)S146 Warning: unaligning (T0294)V270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)D275 Warning: unaligning (T0294)H280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)D275 Warning: unaligning (T0294)P292 because of BadResidue code BAD_PEPTIDE in next template residue (1sc6A)H292 Warning: unaligning (T0294)H293 because of BadResidue code BAD_PEPTIDE at template residue (1sc6A)H292 T0294 5 :RLMKVFVTRRIPAEGRVALARA 1sc6A 9 :DKIKFLLVEGVHQKALESLRAA T0294 28 :DC 1sc6A 31 :GY T0294 30 :EVEQW 1sc6A 34 :NIEFH T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1sc6A 39 :KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGW 1sc6A 74 :EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVG T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGV 1sc6A 147 :FEARGKKLGIIGYGHIGTQLGILAESLGM T0294 179 :RFLYTGRQPRP 1sc6A 176 :YVYFYDIENKL T0294 195 :FQAEFV 1sc6A 189 :GNATQV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLD 1sc6A 196 :HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID T0294 281 :PLLTLKNCVIL 1sc6A 280 :PLAEFDNVLLT T0294 294 :IGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1sc6A 293 :IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA Number of specific fragments extracted= 11 number of extra gaps= 1 total=1637 Number of alignments=124 # 1sc6A read from 1sc6A/merged-good-all-a2m # found chain 1sc6A in template set Warning: unaligning (T0294)P3 because first residue in template chain is (1sc6A)E7 Warning: unaligning (T0294)V4 because of BadResidue code BAD_PEPTIDE at template residue (1sc6A)K8 Warning: unaligning (T0294)T139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)S146 Warning: unaligning (T0294)G148 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)S146 Warning: unaligning (T0294)V270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)D275 Warning: unaligning (T0294)L276 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)D275 Warning: unaligning (T0294)P292 because of BadResidue code BAD_PEPTIDE in next template residue (1sc6A)H292 Warning: unaligning (T0294)H293 because of BadResidue code BAD_PEPTIDE at template residue (1sc6A)H292 T0294 5 :RLMKVFVTRRIPAEGRVALARA 1sc6A 9 :DKIKFLLVEGVHQKALESLRAA T0294 28 :DC 1sc6A 31 :GY T0294 30 :EVEQW 1sc6A 34 :NIEFH T0294 37 :DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAA 1sc6A 39 :KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA T0294 73 :ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGW 1sc6A 74 :EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVG T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGV 1sc6A 147 :FEARGKKLGIIGYGHIGTQLGILAESLGM T0294 179 :RFLYTGRQPR 1sc6A 176 :YVYFYDIENK T0294 189 :P 1sc6A 187 :P T0294 194 :EFQAEFV 1sc6A 188 :LGNATQV T0294 201 :STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLD 1sc6A 196 :HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID T0294 277 :PTNHPLLTLKNCVIL 1sc6A 276 :PFTSPLAEFDNVLLT T0294 294 :IGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 1sc6A 293 :IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA Number of specific fragments extracted= 12 number of extra gaps= 1 total=1649 Number of alignments=125 # 1sc6A read from 1sc6A/merged-good-all-a2m # found chain 1sc6A in template set Warning: unaligning (T0294)T139 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)S146 Warning: unaligning (T0294)G148 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)S146 Warning: unaligning (T0294)V270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sc6A)D275 Warning: unaligning (T0294)H280 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sc6A)D275 Warning: unaligning (T0294)P292 because of BadResidue code BAD_PEPTIDE in next template residue (1sc6A)H292 Warning: unaligning (T0294)H293 because of BadResidue code BAD_PEPTIDE at template residue (1sc6A)H292 T0294 19 :GRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGW 1sc6A 20 :HQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVG T0294 149 :YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE 1sc6A 147 :FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG T0294 195 :FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLD 1sc6A 190 :NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID T0294 281 :PLLTLKNCVIL 1sc6A 280 :PLAEFDNVLLT T0294 294 :IGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 1sc6A 293 :IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF Number of specific fragments extracted= 5 number of extra gaps= 1 total=1654 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ygyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294/1ygyA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0294/1ygyA/merged-good-all-a2m.gz for input Trying 1ygyA/merged-good-all-a2m Error: Couldn't open file 1ygyA/merged-good-all-a2m or 1ygyA/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0294//projects/compbio/experiments/protein-predict/casp7/T0294/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0294//projects/compbio/experiments/protein-predict/casp7/T0294/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0294/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0294/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)A169.CB) [> 3.3448 = 5.5747 < 7.2471] w=1.0000 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)V177.CB) [> 2.8364 = 4.7274 < 6.1456] w=1.0000 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)L172.CB) [> 3.0254 = 5.0423 < 6.5550] w=1.0000 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)L181.CB) [> 3.1313 = 5.2189 < 6.7845] w=0.9917 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)Y182.CB) [> 3.5398 = 5.8997 < 7.6696] w=0.9832 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)F180.CB) [> 3.5111 = 5.8519 < 7.6074] w=0.9830 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)S209.CB) [> 3.9093 = 6.5155 < 8.4701] w=0.9750 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)F211.CB) [> 2.7425 = 4.5708 < 5.9420] w=0.9750 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)S209.CB) [> 2.7533 = 4.5888 < 5.9654] w=0.9750 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)F211.CB) [> 3.9338 = 6.5564 < 8.5233] w=0.9750 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)V239.CB) [> 2.9882 = 4.9803 < 6.4744] w=0.9750 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)L181.CB) [> 3.9453 = 6.5755 < 8.5482] w=0.9748 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)F180.CB) [> 3.4501 = 5.7502 < 7.4752] w=0.9747 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)F180.CB) [> 4.0715 = 6.7858 < 8.8216] w=0.9745 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)I168.CB) [> 3.3793 = 5.6322 < 7.3219] w=0.9744 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)A238.CB) [> 4.1231 = 6.8719 < 8.9335] w=0.9674 to align # Constraint # added constraint: constraint((T0294)D210.CB, (T0294)A238.CB) [> 3.5522 = 5.9204 < 7.6965] w=0.9674 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)V213.CB) [> 2.9183 = 4.8638 < 6.3229] w=0.9674 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)V213.CB) [> 3.8621 = 6.4369 < 8.3680] w=0.9674 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)V213.CB) [> 4.0810 = 6.8017 < 8.8422] w=0.9674 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)Y182.CB) [> 4.1242 = 6.8736 < 8.9357] w=0.9671 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)I212.CB) [> 3.1572 = 5.2620 < 6.8405] w=0.9664 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)T183.CB) [> 3.5931 = 5.9885 < 7.7850] w=0.9662 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)R179.CB) [> 3.7919 = 6.3198 < 8.2157] w=0.9662 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)I241.CB) [> 4.2699 = 7.1165 < 9.2514] w=0.9599 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)I241.CB) [> 3.0377 = 5.0627 < 6.5816] w=0.9599 to align # Constraint # added constraint: constraint((T0294)D210.CB, (T0294)V239.CB) [> 4.0876 = 6.8127 < 8.8565] w=0.9599 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)I243.CB) [> 4.0282 = 6.7137 < 8.7278] w=0.9589 to align # Constraint # added constraint: constraint((T0294)I168.CB, (T0294)V213.CB) [> 3.4863 = 5.8106 < 7.5537] w=0.9589 to align # Constraint # added constraint: constraint((T0294)S209.CB, (T0294)A238.CB) [> 3.9204 = 6.5341 < 8.4943] w=0.9523 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)F240.CB) [> 3.1026 = 5.1709 < 6.7222] w=0.9513 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)I241.CB) [> 4.2239 = 7.0399 < 9.1518] w=0.9513 to align # Constraint # added constraint: constraint((T0294)A206.CB, (T0294)M234.CB) [> 3.3615 = 5.6026 < 7.2833] w=0.9495 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)D210.CB) [> 4.1676 = 6.9460 < 9.0298] w=0.9494 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)V214.CB) [> 3.1834 = 5.3056 < 6.8973] w=0.9494 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)A238.CB) [> 3.9608 = 6.6013 < 8.5817] w=0.9347 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)I243.CB) [> 3.9483 = 6.5806 < 8.5548] w=0.9334 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)Y182.CB) [> 4.0389 = 6.7316 < 8.7510] w=0.9322 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)S244.CB) [> 3.4592 = 5.7654 < 7.4950] w=0.9249 to align # Constraint # added constraint: constraint((T0294)I164.CB, (T0294)A215.CB) [> 2.8281 = 4.7135 < 6.1275] w=0.9248 to align # Constraint # added constraint: constraint((T0294)G165.CA, (T0294)A215.CB) [> 2.5570 = 4.2617 < 5.5402] w=0.9248 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)D210.CB) [> 3.1193 = 5.1988 < 6.7584] w=0.9239 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)S209.CB) [> 3.0547 = 5.0912 < 6.6186] w=0.9239 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)C216.CB) [> 3.0010 = 5.0017 < 6.5022] w=0.9162 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)C216.CB) [> 3.4799 = 5.7998 < 7.5398] w=0.9162 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)A215.CB) [> 3.9412 = 6.5687 < 8.5393] w=0.9153 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)N242.CB) [> 2.8597 = 4.7662 < 6.1961] w=0.9138 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)V239.CB) [> 4.3237 = 7.2062 < 9.3681] w=0.9129 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)A215.CB) [> 2.9057 = 4.8428 < 6.2956] w=0.9078 to align # Constraint # added constraint: constraint((T0294)A206.CB, (T0294)F230.CB) [> 3.2006 = 5.3344 < 6.9347] w=0.8998 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)F211.CB) [> 4.4056 = 7.3427 < 9.5455] w=0.8996 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)A215.CB) [> 4.0459 = 6.7432 < 8.7661] w=0.8908 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)I241.CB) [> 4.3275 = 7.2126 < 9.3763] w=0.8907 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)M234.CB) [> 4.3036 = 7.1727 < 9.3245] w=0.8899 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)I212.CB) [> 4.2623 = 7.1038 < 9.2350] w=0.8898 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)I212.CB) [> 4.5547 = 7.5912 < 9.8685] w=0.8872 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)R179.CB) [> 3.4167 = 5.6945 < 7.4028] w=0.8835 to align # Constraint # added constraint: constraint((T0294)G165.CA, (T0294)V213.CB) [> 4.4715 = 7.4525 < 9.6882] w=0.8822 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)T183.CB) [> 3.2367 = 5.3944 < 7.0128] w=0.8817 to align # Constraint # added constraint: constraint((T0294)S154.CB, (T0294)V177.CB) [> 3.2086 = 5.3477 < 6.9521] w=0.8792 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)A215.CB) [> 3.6992 = 6.1652 < 8.0148] w=0.8758 to align # Constraint # added constraint: constraint((T0294)I168.CB, (T0294)A215.CB) [> 3.8468 = 6.4114 < 8.3348] w=0.8751 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)G184.CA) [> 3.4248 = 5.7080 < 7.4204] w=0.8734 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)Y182.CB) [> 3.5540 = 5.9233 < 7.7003] w=0.8733 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)I243.CB) [> 3.5763 = 5.9605 < 7.7486] w=0.8654 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)V213.CB) [> 4.3303 = 7.2171 < 9.3823] w=0.8652 to align # Constraint # added constraint: constraint((T0294)S154.CB, (T0294)F211.CB) [> 3.5688 = 5.9480 < 7.7324] w=0.8625 to align # Constraint # added constraint: constraint((T0294)S154.CB, (T0294)D210.CB) [> 2.5271 = 4.2118 < 5.4753] w=0.8625 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)L205.CB) [> 3.5144 = 5.8573 < 7.6146] w=0.8599 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)V177.CB) [> 4.2099 = 7.0165 < 9.1214] w=0.8572 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)F199.CB) [> 3.5375 = 5.8958 < 7.6646] w=0.8557 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)Q208.CB) [> 3.5009 = 5.8348 < 7.5853] w=0.8552 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)S244.CB) [> 3.4384 = 5.7306 < 7.4498] w=0.8455 to align # Constraint # added constraint: constraint((T0294)A207.CB, (T0294)K233.CB) [> 3.2264 = 5.3774 < 6.9906] w=0.8372 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)E198.CB) [> 3.4717 = 5.7861 < 7.5220] w=0.8338 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)V214.CB) [> 4.4970 = 7.4950 < 9.7435] w=0.8283 to align # Constraint # added constraint: constraint((T0294)D210.CB, (T0294)K235.CB) [> 3.8455 = 6.4091 < 8.3319] w=0.8221 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)F180.CB) [> 4.3619 = 7.2698 < 9.4508] w=0.8103 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)T202.CB) [> 3.9490 = 6.5817 < 8.5562] w=0.8003 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)A197.CB) [> 3.2185 = 5.3641 < 6.9733] w=0.7971 to align # Constraint # added constraint: constraint((T0294)S209.CB, (T0294)K235.CB) [> 4.1615 = 6.9358 < 9.0166] w=0.7969 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)A197.CB) [> 3.8281 = 6.3801 < 8.2941] w=0.7957 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)R171.CB) [> 3.2411 = 5.4019 < 7.0224] w=0.7943 to align # Constraint # added constraint: constraint((T0294)C216.CB, (T0294)S244.CB) [> 3.5009 = 5.8348 < 7.5852] w=0.7857 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)T183.CB) [> 3.7538 = 6.2564 < 8.1333] w=0.7813 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)Y182.CB) [> 3.6844 = 6.1407 < 7.9829] w=0.7707 to align # Constraint # added constraint: constraint((T0294)L151.CB, (T0294)F175.CB) [> 2.8890 = 4.8150 < 6.2595] w=0.7667 to align # Constraint # added constraint: constraint((T0294)L151.CB, (T0294)V177.CB) [> 3.2897 = 5.4829 < 7.1277] w=0.7667 to align # Constraint # added constraint: constraint((T0294)T152.CB, (T0294)V177.CB) [> 3.6456 = 6.0759 < 7.8987] w=0.7667 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)V200.CB) [> 4.0311 = 6.7185 < 8.7341] w=0.7629 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)L225.CB) [> 3.8387 = 6.3978 < 8.3172] w=0.7531 to align # Constraint # added constraint: constraint((T0294)A207.CB, (T0294)M234.CB) [> 4.3061 = 7.1768 < 9.3299] w=0.7526 to align # Constraint # added constraint: constraint((T0294)T152.CB, (T0294)G176.CA) [> 2.3790 = 3.9650 < 5.1545] w=0.7523 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)E198.CB) [> 4.0260 = 6.7099 < 8.7229] w=0.7455 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)I212.CB) [> 4.5330 = 7.5550 < 9.8214] w=0.7401 to align # Constraint # added constraint: constraint((T0294)S209.CB, (T0294)M234.CB) [> 4.1539 = 6.9232 < 9.0001] w=0.7352 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)L205.CB) [> 3.4746 = 5.7910 < 7.5283] w=0.7300 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)A167.CB) [> 2.7339 = 4.5564 < 5.9233] w=0.7295 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)F199.CB) [> 4.0286 = 6.7144 < 8.7287] w=0.7218 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)I243.CB) [> 3.3618 = 5.6030 < 7.2839] w=0.7208 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)L172.CB) [> 4.3721 = 7.2868 < 9.4729] w=0.7197 to align # Constraint # added constraint: constraint((T0294)T183.CB, (T0294)F199.CB) [> 4.0703 = 6.7838 < 8.8190] w=0.7173 to align # Constraint # added constraint: constraint((T0294)L151.CB, (T0294)G176.CA) [> 3.9336 = 6.5561 < 8.5229] w=0.7155 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)I168.CB) [> 3.6560 = 6.0934 < 7.9214] w=0.7150 to align # Constraint # added constraint: constraint((T0294)C216.CB, (T0294)L225.CB) [> 3.7392 = 6.2320 < 8.1016] w=0.7106 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)A215.CB) [> 4.5593 = 7.5988 < 9.8784] w=0.7081 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)V200.CB) [> 3.6542 = 6.0903 < 7.9174] w=0.7081 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)I241.CB) [> 3.4946 = 5.8244 < 7.5718] w=0.7077 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)A197.CB) [> 3.5043 = 5.8405 < 7.5926] w=0.7060 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)L225.CB) [> 3.7224 = 6.2040 < 8.0652] w=0.7015 to align # Constraint # added constraint: constraint((T0294)C226.CB, (T0294)V249.CB) [> 2.6297 = 4.3829 < 5.6978] w=0.6958 to align # Constraint # added constraint: constraint((T0294)T202.CB, (T0294)F230.CB) [> 4.0973 = 6.8288 < 8.8774] w=0.6873 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)I164.CB) [> 3.2941 = 5.4902 < 7.1372] w=0.6867 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)V239.CB) [> 3.8495 = 6.4159 < 8.3407] w=0.6823 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)F240.CB) [> 4.4612 = 7.4354 < 9.6660] w=0.6796 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)G184.CA) [> 3.3453 = 5.5755 < 7.2481] w=0.6750 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)T183.CB) [> 4.4717 = 7.4529 < 9.6888] w=0.6686 to align # Constraint # added constraint: constraint((T0294)I164.CB, (T0294)I243.CB) [> 3.7737 = 6.2895 < 8.1764] w=0.6682 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)N242.CB) [> 4.3529 = 7.2548 < 9.4313] w=0.6669 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)L181.CB) [> 4.1795 = 6.9658 < 9.0555] w=0.6667 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)G184.CA) [> 3.9640 = 6.6067 < 8.5887] w=0.6586 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)F180.CB) [> 3.1639 = 5.2732 < 6.8552] w=0.6496 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)V213.CB) [> 3.9172 = 6.5287 < 8.4874] w=0.6454 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)Y182.CB) [> 3.7824 = 6.3039 < 8.1951] w=0.6411 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)V100.CB) [> 3.2207 = 5.3678 < 6.9781] w=0.6373 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)E198.CB) [> 4.2137 = 7.0228 < 9.1297] w=0.6361 to align # Constraint # added constraint: constraint((T0294)T152.CB, (T0294)F175.CB) [> 3.3282 = 5.5471 < 7.2112] w=0.6355 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)S209.CB) [> 3.8858 = 6.4763 < 8.4192] w=0.6332 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)L181.CB) [> 3.8614 = 6.4356 < 8.3663] w=0.6326 to align # Constraint # added constraint: constraint((T0294)T183.CB, (T0294)T202.CB) [> 3.3045 = 5.5075 < 7.1598] w=0.6318 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)R99.CB) [> 3.3409 = 5.5681 < 7.2385] w=0.6288 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)G101.CA) [> 3.4855 = 5.8092 < 7.5519] w=0.6288 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)Y102.CB) [> 3.2357 = 5.3928 < 7.0106] w=0.6288 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)F240.CB) [> 4.3876 = 7.3126 < 9.5064] w=0.6259 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)I168.CB) [> 3.2860 = 5.4767 < 7.1197] w=0.6251 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)F211.CB) [> 4.0764 = 6.7940 < 8.8322] w=0.6224 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)G101.CA) [> 3.9406 = 6.5677 < 8.5380] w=0.6203 to align # Constraint # added constraint: constraint((T0294)G224.CA, (T0294)V248.CB) [> 3.7392 = 6.2320 < 8.1016] w=0.6109 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)I241.CB) [> 4.2173 = 7.0288 < 9.1374] w=0.6061 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)L254.CB) [> 3.9808 = 6.6347 < 8.6251] w=0.6057 to align # Constraint # added constraint: constraint((T0294)K76.CB, (T0294)I98.CB) [> 3.9396 = 6.5660 < 8.5358] w=0.6033 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)I98.CB) [> 3.8225 = 6.3708 < 8.2820] w=0.6033 to align # Constraint # added constraint: constraint((T0294)K228.CB, (T0294)N250.CB) [> 4.0093 = 6.6822 < 8.6869] w=0.6032 to align # Constraint # added constraint: constraint((T0294)Q208.CB, (T0294)K235.CB) [> 4.2592 = 7.0986 < 9.2282] w=0.6030 to align # Constraint # added constraint: constraint((T0294)G224.CA, (T0294)V249.CB) [> 3.9311 = 6.5518 < 8.5173] w=0.6023 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)F195.CB) [> 3.6155 = 6.0259 < 7.8337] w=0.6022 to align # Constraint # added constraint: constraint((T0294)N227.CB, (T0294)N250.CB) [> 2.9687 = 4.9478 < 6.4321] w=0.6004 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)R171.CB) [> 3.4792 = 5.7987 < 7.5384] w=0.5997 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)Y149.CB) [> 3.1583 = 5.2637 < 6.8429] w=0.5984 to align # Constraint # added constraint: constraint((T0294)C226.CB, (T0294)N250.CB) [> 3.7636 = 6.2726 < 8.1544] w=0.5948 to align # Constraint # added constraint: constraint((T0294)L225.CB, (T0294)V249.CB) [> 4.4021 = 7.3369 < 9.5380] w=0.5947 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)I164.CB) [> 3.9205 = 6.5342 < 8.4945] w=0.5919 to align # Constraint # added constraint: constraint((T0294)L151.CB, (T0294)L172.CB) [> 4.1370 = 6.8949 < 8.9634] w=0.5895 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)V248.CB) [> 3.1648 = 5.2746 < 6.8570] w=0.5887 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)V249.CB) [> 4.1243 = 6.8738 < 8.9360] w=0.5874 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)L205.CB) [> 4.0227 = 6.7044 < 8.7158] w=0.5864 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)D253.CB) [> 3.6826 = 6.1377 < 7.9790] w=0.5862 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)I168.CB) [> 2.9303 = 4.8838 < 6.3490] w=0.5854 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)T183.CB) [> 4.3917 = 7.3195 < 9.5154] w=0.5834 to align # Constraint # added constraint: constraint((T0294)E113.CB, (T0294)R171.CB) [> 4.2458 = 7.0763 < 9.1992] w=0.5825 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)L151.CB) [> 3.5939 = 5.9898 < 7.7867] w=0.5815 to align # Constraint # added constraint: constraint((T0294)R124.CB, (T0294)G148.CA) [> 3.5243 = 5.8739 < 7.6360] w=0.5794 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)V249.CB) [> 4.1251 = 6.8752 < 8.9377] w=0.5769 to align # Constraint # added constraint: constraint((T0294)S217.CB, (T0294)S244.CB) [> 3.9059 = 6.5099 < 8.4629] w=0.5710 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)T103.CB) [> 3.9490 = 6.5816 < 8.5561] w=0.5699 to align # Constraint # added constraint: constraint((T0294)P203.CB, (T0294)F230.CB) [> 3.8311 = 6.3852 < 8.3008] w=0.5694 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)V100.CB) [> 4.1013 = 6.8356 < 8.8862] w=0.5692 to align # Constraint # added constraint: constraint((T0294)L75.CB, (T0294)I98.CB) [> 3.4060 = 5.6768 < 7.3798] w=0.5692 to align # Constraint # added constraint: constraint((T0294)T183.CB, (T0294)V200.CB) [> 3.3340 = 5.5567 < 7.2237] w=0.5676 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)G148.CA) [> 3.9174 = 6.5291 < 8.4878] w=0.5643 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)F211.CB) [> 3.6568 = 6.0947 < 7.9231] w=0.5626 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)L172.CB) [> 4.1511 = 6.9184 < 8.9939] w=0.5596 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)I164.CB) [> 2.9620 = 4.9367 < 6.4177] w=0.5554 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)A264.CB) [> 3.4618 = 5.7697 < 7.5006] w=0.5518 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)A197.CB) [> 3.0295 = 5.0492 < 6.5640] w=0.5508 to align # Constraint # added constraint: constraint((T0294)N227.CB, (T0294)D253.CB) [> 3.5206 = 5.8676 < 7.6279] w=0.5508 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)I263.CB) [> 3.5642 = 5.9403 < 7.7224] w=0.5465 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)L151.CB) [> 3.9468 = 6.5779 < 8.5513] w=0.5456 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)I98.CB) [> 3.6556 = 6.0927 < 7.9205] w=0.5444 to align # Constraint # added constraint: constraint((T0294)S154.CB, (T0294)R179.CB) [> 4.2960 = 7.1600 < 9.3080] w=0.5406 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)V213.CB) [> 3.5053 = 5.8422 < 7.5949] w=0.5370 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)I263.CB) [> 4.1724 = 6.9540 < 9.0402] w=0.5361 to align # Constraint # added constraint: constraint((T0294)C123.CB, (T0294)G150.CA) [> 3.6722 = 6.1203 < 7.9563] w=0.5302 to align # Constraint # added constraint: constraint((T0294)T108.CB, (T0294)R163.CB) [> 2.7787 = 4.6312 < 6.0206] w=0.5297 to align # Constraint # added constraint: constraint((T0294)L225.CB, (T0294)V248.CB) [> 3.2663 = 5.4439 < 7.0770] w=0.5297 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)T103.CB) [> 3.7519 = 6.2532 < 8.1292] w=0.5281 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)V100.CB) [> 4.4030 = 7.3384 < 9.5399] w=0.5267 to align # Constraint # added constraint: constraint((T0294)A238.CB, (T0294)I263.CB) [> 3.4593 = 5.7654 < 7.4950] w=0.5187 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)I241.CB) [> 3.3685 = 5.6142 < 7.2984] w=0.5175 to align # Constraint # added constraint: constraint((T0294)A238.CB, (T0294)A264.CB) [> 3.8596 = 6.4327 < 8.3624] w=0.5161 to align # Constraint # added constraint: constraint((T0294)L218.CB, (T0294)S244.CB) [> 3.9299 = 6.5499 < 8.5149] w=0.5159 to align # Constraint # added constraint: constraint((T0294)E223.CB, (T0294)V248.CB) [> 3.9801 = 6.6335 < 8.6235] w=0.5090 to align # Constraint # added constraint: constraint((T0294)T108.CB, (T0294)I164.CB) [> 3.2377 = 5.3961 < 7.0150] w=0.5088 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)G101.CA) [> 3.6776 = 6.1294 < 7.9682] w=0.5018 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)V100.CB) [> 4.0589 = 6.7648 < 8.7942] w=0.5018 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)R99.CB) [> 4.3307 = 7.2179 < 9.3833] w=0.5018 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)S79.CB) [> 3.9577 = 6.5962 < 8.5751] w=0.5018 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)Y102.CB) [> 3.6156 = 6.0261 < 7.8339] w=0.5011 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)G165.CA) [> 4.1113 = 6.8522 < 8.9079] w=0.4965 to align # Constraint # added constraint: constraint((T0294)T103.CB, (T0294)M305.CB) [> 3.2713 = 5.4521 < 7.0877] w=0.4960 to align # Constraint # added constraint: constraint((T0294)L218.CB, (T0294)V248.CB) [> 3.7238 = 6.2064 < 8.0683] w=0.4957 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)I243.CB) [> 3.4971 = 5.8285 < 7.5770] w=0.4927 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)V239.CB) [> 3.9727 = 6.6211 < 8.6074] w=0.4920 to align # Constraint # added constraint: constraint((T0294)T103.CB, (T0294)A309.CB) [> 3.3861 = 5.6436 < 7.3366] w=0.4876 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)G101.CA) [> 4.2850 = 7.1416 < 9.2841] w=0.4845 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)L254.CB) [> 4.0700 = 6.7833 < 8.8183] w=0.4842 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)A265.CB) [> 3.1656 = 5.2761 < 6.8589] w=0.4833 to align # Constraint # added constraint: constraint((T0294)T103.CB, (T0294)L308.CB) [> 2.8272 = 4.7120 < 6.1255] w=0.4798 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)A266.CB) [> 3.1262 = 5.2104 < 6.7735] w=0.4775 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)L75.CB) [> 3.8463 = 6.4104 < 8.3335] w=0.4769 to align # Constraint # added constraint: constraint((T0294)K173.CB, (T0294)A197.CB) [> 4.2727 = 7.1212 < 9.2576] w=0.4765 to align # Constraint # added constraint: constraint((T0294)R170.CB, (T0294)F195.CB) [> 3.7797 = 6.2996 < 8.1894] w=0.4763 to align # Constraint # added constraint: constraint((T0294)R124.CB, (T0294)Y149.CB) [> 4.3047 = 7.1746 < 9.3270] w=0.4706 to align # Constraint # added constraint: constraint((T0294)K173.CB, (T0294)F195.CB) [> 3.5710 = 5.9516 < 7.7371] w=0.4698 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)S79.CB) [> 3.5153 = 5.8588 < 7.6165] w=0.4684 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)V100.CB) [> 3.8558 = 6.4263 < 8.3542] w=0.4645 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)F175.CB) [> 4.2786 = 7.1310 < 9.2703] w=0.4632 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)A266.CB) [> 4.3260 = 7.2099 < 9.3729] w=0.4609 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)L75.CB) [> 3.8868 = 6.4781 < 8.4215] w=0.4599 to align # Constraint # added constraint: constraint((T0294)T110.CB, (T0294)T301.CB) [> 3.0352 = 5.0586 < 6.5762] w=0.4593 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)Y102.CB) [> 4.1076 = 6.8460 < 8.8997] w=0.4592 to align # Constraint # added constraint: constraint((T0294)C216.CB, (T0294)V248.CB) [> 3.6976 = 6.1626 < 8.0114] w=0.4590 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)Y102.CB) [> 4.4746 = 7.4577 < 9.6950] w=0.4585 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)A264.CB) [> 2.7635 = 4.6058 < 5.9876] w=0.4581 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)I241.CB) [> 3.5366 = 5.8944 < 7.6627] w=0.4552 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)A169.CB) [> 4.6041 = 7.6735 < 9.9756] w=0.4545 to align # Constraint # added constraint: constraint((T0294)M234.CB, (T0294)I263.CB) [> 4.0206 = 6.7010 < 8.7113] w=0.4539 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)A265.CB) [> 4.3326 = 7.2210 < 9.3872] w=0.4527 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)I263.CB) [> 4.0839 = 6.8065 < 8.8484] w=0.4521 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)A257.CB) [> 2.9238 = 4.8730 < 6.3349] w=0.4518 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)A265.CB) [> 2.6995 = 4.4991 < 5.8489] w=0.4514 to align # Constraint # added constraint: constraint((T0294)T222.CB, (T0294)V248.CB) [> 3.5753 = 5.9588 < 7.7465] w=0.4510 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)I78.CB) [> 4.0347 = 6.7245 < 8.7418] w=0.4507 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)V31.CB) [> 3.1424 = 5.2373 < 6.8085] w=0.4507 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)F240.CB) [> 4.3885 = 7.3142 < 9.5084] w=0.4500 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)G267.CA) [> 4.0165 = 6.6942 < 8.7025] w=0.4496 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)G267.CA) [> 3.0859 = 5.1432 < 6.6861] w=0.4496 to align # Constraint # added constraint: constraint((T0294)T202.CB, (T0294)L225.CB) [> 3.9878 = 6.6463 < 8.6402] w=0.4493 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)V239.CB) [> 3.0787 = 5.1312 < 6.6706] w=0.4484 to align # Constraint # added constraint: constraint((T0294)C226.CB, (T0294)L254.CB) [> 4.1614 = 6.9357 < 9.0164] w=0.4450 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)S79.CB) [> 4.2429 = 7.0715 < 9.1930] w=0.4422 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)I294.CB) [> 3.8838 = 6.4730 < 8.4149] w=0.4422 to align # Constraint # added constraint: constraint((T0294)S217.CB, (T0294)R245.CB) [> 4.2179 = 7.0299 < 9.1388] w=0.4409 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)G267.CA) [> 4.1262 = 6.8771 < 8.9402] w=0.4408 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)L268.CB) [> 3.0793 = 5.1322 < 6.6719] w=0.4406 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)V214.CB) [> 4.4873 = 7.4789 < 9.7226] w=0.4398 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)A192.CB) [> 3.3660 = 5.6100 < 7.2930] w=0.4387 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)E32.CB) [> 4.2588 = 7.0979 < 9.2273] w=0.4336 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)E32.CB) [> 3.2821 = 5.4702 < 7.1112] w=0.4334 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)D269.CB) [> 2.9379 = 4.8965 < 6.3654] w=0.4323 to align # Constraint # added constraint: constraint((T0294)L88.CB, (T0294)V100.CB) [> 3.8150 = 6.3584 < 8.2659] w=0.4317 to align # Constraint # added constraint: constraint((T0294)E236.CB, (T0294)K262.CB) [> 3.4152 = 5.6921 < 7.3997] w=0.4314 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)Q33.CB) [> 2.9878 = 4.9797 < 6.4736] w=0.4304 to align # Constraint # added constraint: constraint((T0294)K65.CB, (T0294)E92.CB) [> 3.3906 = 5.6510 < 7.3463] w=0.4304 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)E32.CB) [> 4.2817 = 7.1362 < 9.2771] w=0.4297 to align # Constraint # added constraint: constraint((T0294)I164.CB, (T0294)S244.CB) [> 3.9831 = 6.6385 < 8.6300] w=0.4278 to align # Constraint # added constraint: constraint((T0294)L218.CB, (T0294)G246.CA) [> 4.1183 = 6.8638 < 8.9229] w=0.4267 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)I243.CB) [> 4.3081 = 7.1802 < 9.3343] w=0.4259 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)I78.CB) [> 3.4688 = 5.7813 < 7.5157] w=0.4258 to align # Constraint # added constraint: constraint((T0294)E223.CB, (T0294)D247.CB) [> 3.3650 = 5.6084 < 7.2909] w=0.4240 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)A266.CB) [> 4.3197 = 7.1994 < 9.3592] w=0.4238 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)V31.CB) [> 3.8003 = 6.3339 < 8.2341] w=0.4212 to align # Constraint # added constraint: constraint((T0294)G165.CA, (T0294)Y182.CB) [> 4.5172 = 7.5287 < 9.7873] w=0.4209 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)A309.CB) [> 3.1287 = 5.2144 < 6.7788] w=0.4205 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)E30.CB) [> 4.1909 = 6.9849 < 9.0803] w=0.4185 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)V77.CB) [> 3.3820 = 5.6366 < 7.3276] w=0.4173 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)W34.CB) [> 4.0890 = 6.8151 < 8.8596] w=0.4166 to align # Constraint # added constraint: constraint((T0294)L254.CB, (T0294)A266.CB) [> 3.5135 = 5.8558 < 7.6125] w=0.4160 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)G267.CA) [> 3.2171 = 5.3618 < 6.9703] w=0.4158 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)L268.CB) [> 4.2993 = 7.1655 < 9.3152] w=0.4158 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)E32.CB) [> 4.0481 = 6.7468 < 8.7709] w=0.4135 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)Q196.CB) [> 4.0205 = 6.7009 < 8.7112] w=0.4120 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)A266.CB) [> 4.3449 = 7.2415 < 9.4140] w=0.4098 to align # Constraint # added constraint: constraint((T0294)L218.CB, (T0294)R245.CB) [> 2.5831 = 4.3051 < 5.5967] w=0.4097 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)T80.CB) [> 4.0549 = 6.7581 < 8.7856] w=0.4088 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)Y102.CB) [> 3.7269 = 6.2115 < 8.0750] w=0.4088 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)K76.CB) [> 3.6718 = 6.1196 < 7.9555] w=0.4088 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)E30.CB) [> 2.8990 = 4.8316 < 6.2811] w=0.4088 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)Q208.CB) [> 3.8830 = 6.4717 < 8.4132] w=0.4086 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)A215.CB) [> 4.5180 = 7.5301 < 9.7891] w=0.4084 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)I93.CB) [> 3.9894 = 6.6491 < 8.6438] w=0.4081 to align # Constraint # added constraint: constraint((T0294)E32.CB, (T0294)A52.CB) [> 4.3196 = 7.1994 < 9.3592] w=0.4070 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)I263.CB) [> 4.3445 = 7.2408 < 9.4131] w=0.4063 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)C29.CB) [> 3.2690 = 5.4484 < 7.0829] w=0.4059 to align # Constraint # added constraint: constraint((T0294)Q153.CB, (T0294)R179.CB) [> 4.0636 = 6.7726 < 8.8044] w=0.4020 to align # Constraint # added constraint: constraint((T0294)R20.CB, (T0294)V31.CB) [> 3.3096 = 5.5159 < 7.1707] w=0.4010 to align # Constraint # added constraint: constraint((T0294)L254.CB, (T0294)I263.CB) [> 3.9593 = 6.5989 < 8.5786] w=0.4003 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)V77.CB) [> 3.8661 = 6.4434 < 8.3764] w=0.4003 to align # Constraint # added constraint: constraint((T0294)R125.CB, (T0294)G148.CA) [> 3.5453 = 5.9088 < 7.6815] w=0.3982 to align # Constraint # added constraint: constraint((T0294)L68.CB, (T0294)I93.CB) [> 3.6267 = 6.0444 < 7.8577] w=0.3978 to align # Constraint # added constraint: constraint((T0294)A265.CB, (T0294)V289.CB) [> 4.2393 = 7.0655 < 9.1851] w=0.3953 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)Q208.CB) [> 4.5485 = 7.5808 < 9.8551] w=0.3934 to align # Constraint # added constraint: constraint((T0294)G101.CA, (T0294)N312.CB) [> 3.6096 = 6.0160 < 7.8209] w=0.3918 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)M81.CB) [> 3.4674 = 5.7790 < 7.5128] w=0.3918 to align # Constraint # added constraint: constraint((T0294)T202.CB, (T0294)C226.CB) [> 4.2008 = 7.0014 < 9.1018] w=0.3894 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)L313.CB) [> 3.6976 = 6.1627 < 8.0114] w=0.3864 to align # Constraint # added constraint: constraint((T0294)D64.CB, (T0294)A89.CB) [> 3.5131 = 5.8552 < 7.6117] w=0.3833 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)I78.CB) [> 4.0276 = 6.7127 < 8.7266] w=0.3825 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)T80.CB) [> 4.1376 = 6.8961 < 8.9649] w=0.3825 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)V270.CB) [> 3.8835 = 6.4726 < 8.4143] w=0.3824 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)W34.CB) [> 3.3555 = 5.5925 < 7.2703] w=0.3822 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)F240.CB) [> 4.5433 = 7.5721 < 9.8437] w=0.3819 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)V270.CB) [> 3.6134 = 6.0223 < 7.8290] w=0.3819 to align # Constraint # added constraint: constraint((T0294)A265.CB, (T0294)C288.CB) [> 4.0858 = 6.8096 < 8.8525] w=0.3809 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)V100.CB) [> 3.8400 = 6.4000 < 8.3199] w=0.3805 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)A167.CB) [> 4.0715 = 6.7859 < 8.8216] w=0.3768 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)M81.CB) [> 3.9938 = 6.6563 < 8.6532] w=0.3748 to align # Constraint # added constraint: constraint((T0294)A52.CB, (T0294)N74.CB) [> 4.0190 = 6.6984 < 8.7079] w=0.3748 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)T80.CB) [> 3.7977 = 6.3295 < 8.2284] w=0.3748 to align # Constraint # added constraint: constraint((T0294)V63.CB, (T0294)L88.CB) [> 3.2100 = 5.3500 < 6.9550] w=0.3748 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)A192.CB) [> 3.2423 = 5.4038 < 7.0249] w=0.3729 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)R188.CB) [> 3.1178 = 5.1963 < 6.7552] w=0.3722 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)G316.CA) [> 3.7689 = 6.2815 < 8.1660] w=0.3693 to align # Constraint # added constraint: constraint((T0294)T103.CB, (T0294)N312.CB) [> 4.1892 = 6.9820 < 9.0766] w=0.3690 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)A266.CB) [> 4.2628 = 7.1047 < 9.2360] w=0.3686 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)S306.CB) [> 3.7251 = 6.2086 < 8.0711] w=0.3663 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)N312.CB) [> 3.3302 = 5.5504 < 7.2155] w=0.3663 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)I294.CB) [> 3.7287 = 6.2144 < 8.0788] w=0.3663 to align # Constraint # added constraint: constraint((T0294)A265.CB, (T0294)N287.CB) [> 2.6463 = 4.4104 < 5.7336] w=0.3663 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)G267.CA) [> 3.7467 = 6.2445 < 8.1178] w=0.3660 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)W34.CB) [> 4.1166 = 6.8610 < 8.9193] w=0.3655 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)V270.CB) [> 2.7379 = 4.5631 < 5.9321] w=0.3651 to align # Constraint # added constraint: constraint((T0294)A266.CB, (T0294)V289.CB) [> 4.3898 = 7.3163 < 9.5112] w=0.3639 to align # Constraint # added constraint: constraint((T0294)A266.CB, (T0294)C288.CB) [> 3.1835 = 5.3058 < 6.8975] w=0.3639 to align # Constraint # added constraint: constraint((T0294)V106.CB, (T0294)L308.CB) [> 3.5630 = 5.9383 < 7.7198] w=0.3634 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)T103.CB) [> 3.9817 = 6.6361 < 8.6270] w=0.3626 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)V156.CB) [> 4.5265 = 7.5441 < 9.8074] w=0.3603 to align # Constraint # added constraint: constraint((T0294)L258.CB, (T0294)N287.CB) [> 3.7092 = 6.1820 < 8.0366] w=0.3578 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)V289.CB) [> 3.5800 = 5.9667 < 7.7567] w=0.3578 to align # Constraint # added constraint: constraint((T0294)T121.CB, (T0294)V289.CB) [> 3.4950 = 5.8250 < 7.5725] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)V289.CB) [> 3.4239 = 5.7065 < 7.4184] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)I243.CB) [> 3.5047 = 5.8412 < 7.5935] w=0.3578 to align # Constraint # added constraint: constraint((T0294)T110.CB, (T0294)G295.CA) [> 3.5819 = 5.9698 < 7.7607] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)T301.CB) [> 2.7489 = 4.5815 < 5.9559] w=0.3578 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)Y102.CB) [> 3.3759 = 5.6266 < 7.3145] w=0.3578 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)A309.CB) [> 2.7322 = 4.5537 < 5.9199] w=0.3578 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)M305.CB) [> 3.0055 = 5.0092 < 6.5120] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L258.CB, (T0294)C288.CB) [> 4.1115 = 6.8525 < 8.9082] w=0.3578 to align # Constraint # added constraint: constraint((T0294)A264.CB, (T0294)N287.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.3578 to align # Constraint # added constraint: constraint((T0294)A266.CB, (T0294)N287.CB) [> 4.3050 = 7.1751 < 9.3276] w=0.3578 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)C288.CB) [> 3.7532 = 6.2554 < 8.1320] w=0.3578 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)V289.CB) [> 2.6110 = 4.3516 < 5.6571] w=0.3578 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)I290.CB) [> 4.0248 = 6.7079 < 8.7203] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)V289.CB) [> 4.5030 = 7.5049 < 9.7564] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)I290.CB) [> 3.4146 = 5.6910 < 7.3983] w=0.3578 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)L291.CB) [> 4.4910 = 7.4850 < 9.7305] w=0.3578 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)L291.CB) [> 2.7794 = 4.6323 < 6.0219] w=0.3578 to align # Constraint # added constraint: constraint((T0294)I168.CB, (T0294)I243.CB) [> 4.2220 = 7.0366 < 9.1476] w=0.3575 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)T271.CB) [> 3.4294 = 5.7157 < 7.4304] w=0.3571 to align # Constraint # added constraint: constraint((T0294)L68.CB, (T0294)A89.CB) [> 3.8513 = 6.4188 < 8.3444] w=0.3565 to align # Constraint # added constraint: constraint((T0294)R20.CB, (T0294)Q33.CB) [> 3.8098 = 6.3497 < 8.2546] w=0.3558 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)L172.CB) [> 4.4564 = 7.4273 < 9.6555] w=0.3506 to align # Constraint # added constraint: constraint((T0294)M234.CB, (T0294)A257.CB) [> 4.5544 = 7.5906 < 9.8678] w=0.3496 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)V31.CB) [> 4.5124 = 7.5206 < 9.7768] w=0.3493 to align # Constraint # added constraint: constraint((T0294)V106.CB, (T0294)T301.CB) [> 3.1829 = 5.3049 < 6.8963] w=0.3492 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)S82.CB) [> 3.5282 = 5.8803 < 7.6444] w=0.3492 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)P104.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.3492 to align # Constraint # added constraint: constraint((T0294)D247.CB, (T0294)S272.CB) [> 3.3141 = 5.5236 < 7.1806] w=0.3492 to align # Constraint # added constraint: constraint((T0294)L68.CB, (T0294)R96.CB) [> 3.5814 = 5.9690 < 7.7597] w=0.3489 to align # Constraint # added constraint: constraint((T0294)V63.CB, (T0294)H87.CB) [> 3.7771 = 6.2952 < 8.1838] w=0.3488 to align # Constraint # added constraint: constraint((T0294)V63.CB, (T0294)A89.CB) [> 3.9246 = 6.5410 < 8.5033] w=0.3485 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)V31.CB) [> 4.5377 = 7.5628 < 9.8316] w=0.3482 to align # Constraint # added constraint: constraint((T0294)E236.CB, (T0294)G261.CA) [> 4.0861 = 6.8101 < 8.8531] w=0.3411 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)G295.CA) [> 3.2415 = 5.4025 < 7.0232] w=0.3407 to align # Constraint # added constraint: constraint((T0294)P127.CB, (T0294)V289.CB) [> 3.4293 = 5.7155 < 7.4301] w=0.3407 to align # Constraint # added constraint: constraint((T0294)A52.CB, (T0294)L75.CB) [> 3.7431 = 6.2385 < 8.1100] w=0.3407 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)V270.CB) [> 3.9453 = 6.5756 < 8.5482] w=0.3400 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)H293.CB) [> 3.4444 = 5.7407 < 7.4629] w=0.3397 to align # Constraint # added constraint: constraint((T0294)V270.CB, (T0294)H293.CB) [> 3.4151 = 5.6918 < 7.3993] w=0.3397 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)D269.CB) [> 4.1168 = 6.8614 < 8.9198] w=0.3393 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)C29.CB) [> 4.2441 = 7.0735 < 9.1955] w=0.3376 to align # Constraint # added constraint: constraint((T0294)G184.CA, (T0294)F199.CB) [> 3.9701 = 6.6168 < 8.6018] w=0.3366 to align # Constraint # added constraint: constraint((T0294)H62.CB, (T0294)H87.CB) [> 3.3849 = 5.6416 < 7.3340] w=0.3322 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)T103.CB) [> 3.9164 = 6.5273 < 8.4855] w=0.3322 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)M305.CB) [> 4.0045 = 6.6743 < 8.6765] w=0.3322 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)T103.CB) [> 3.9833 = 6.6389 < 8.6305] w=0.3322 to align # Constraint # added constraint: constraint((T0294)T110.CB, (T0294)T298.CB) [> 2.7832 = 4.6386 < 6.0302] w=0.3322 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)G295.CA) [> 3.0528 = 5.0880 < 6.6144] w=0.3322 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)D269.CB) [> 3.8859 = 6.4766 < 8.4195] w=0.3322 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)L291.CB) [> 4.4857 = 7.4762 < 9.7190] w=0.3322 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)G295.CA) [> 2.5372 = 4.2286 < 5.4972] w=0.3322 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)G295.CA) [> 3.7375 = 6.2292 < 8.0980] w=0.3322 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)S272.CB) [> 3.0497 = 5.0829 < 6.6077] w=0.3322 to align # Constraint # added constraint: constraint((T0294)L258.CB, (T0294)L285.CB) [> 3.3347 = 5.5578 < 7.2251] w=0.3322 to align # Constraint # added constraint: constraint((T0294)E274.CB, (T0294)H293.CB) [> 3.7539 = 6.2565 < 8.1334] w=0.3322 to align # Constraint # added constraint: constraint((T0294)I78.CB, (T0294)L88.CB) [> 3.6945 = 6.1575 < 8.0048] w=0.3322 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)V270.CB) [> 3.3949 = 5.6582 < 7.3557] w=0.3315 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)A197.CB) [> 4.4360 = 7.3933 < 9.6113] w=0.3310 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)L56.CB) [> 3.6839 = 6.1398 < 7.9817] w=0.3293 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)F199.CB) [> 4.5541 = 7.5902 < 9.8672] w=0.3293 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)R185.CB) [> 4.6283 = 7.7138 < 10.0280] w=0.3278 to align # Constraint # added constraint: constraint((T0294)T155.CB, (T0294)Q178.CB) [> 2.9296 = 4.8827 < 6.3475] w=0.3248 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)R179.CB) [> 3.1830 = 5.3050 < 6.8966] w=0.3248 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)R179.CB) [> 3.8819 = 6.4698 < 8.4107] w=0.3248 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)R179.CB) [> 3.8545 = 6.4241 < 8.3513] w=0.3248 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)Q178.CB) [> 4.1639 = 6.9399 < 9.0219] w=0.3248 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)N74.CB) [> 3.4634 = 5.7723 < 7.5040] w=0.3237 to align # Constraint # added constraint: constraint((T0294)Y255.CB, (T0294)L282.CB) [> 3.8802 = 6.4670 < 8.4071] w=0.3232 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)L56.CB) [> 4.1864 = 6.9774 < 9.0706] w=0.3218 to align # Constraint # added constraint: constraint((T0294)L68.CB, (T0294)I98.CB) [> 4.0425 = 6.7375 < 8.7587] w=0.3160 to align # Constraint # added constraint: constraint((T0294)G51.CA, (T0294)N74.CB) [> 3.3820 = 5.6366 < 7.3276] w=0.3152 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)I78.CB) [> 4.2128 = 7.0213 < 9.1277] w=0.3151 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)A197.CB) [> 4.4792 = 7.4654 < 9.7050] w=0.3148 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)A206.CB) [> 4.2371 = 7.0619 < 9.1805] w=0.3123 to align # Constraint # added constraint: constraint((T0294)Q166.CB, (T0294)F195.CB) [> 4.0676 = 6.7794 < 8.8132] w=0.3118 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)A264.CB) [> 4.3019 = 7.1699 < 9.3209] w=0.3092 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)L55.CB) [> 3.3699 = 5.6165 < 7.3014] w=0.3090 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)S209.CB) [> 3.9256 = 6.5427 < 8.5055] w=0.3083 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)L181.CB) [> 3.7540 = 6.2567 < 8.1337] w=0.3081 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)L181.CB) [> 3.1674 = 5.2790 < 6.8628] w=0.3081 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)L181.CB) [> 4.1545 = 6.9241 < 9.0014] w=0.3081 to align # Constraint # added constraint: constraint((T0294)Q251.CB, (T0294)S272.CB) [> 3.4192 = 5.6986 < 7.4082] w=0.3067 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)S296.CB) [> 2.9325 = 4.8874 < 6.3537] w=0.3067 to align # Constraint # added constraint: constraint((T0294)D105.CB, (T0294)R163.CB) [> 3.6399 = 6.0665 < 7.8864] w=0.3067 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)A309.CB) [> 4.2295 = 7.0492 < 9.1639] w=0.3067 to align # Constraint # added constraint: constraint((T0294)S60.CB, (T0294)H87.CB) [> 3.8556 = 6.4260 < 8.3539] w=0.3067 to align # Constraint # added constraint: constraint((T0294)Y255.CB, (T0294)P281.CB) [> 3.1581 = 5.2634 < 6.8425] w=0.3061 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)A71.CB) [> 4.1917 = 6.9862 < 9.0820] w=0.3057 to align # Constraint # added constraint: constraint((T0294)V49.CB, (T0294)A71.CB) [> 3.1863 = 5.3104 < 6.9036] w=0.3056 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)L268.CB) [> 4.2370 = 7.0617 < 9.1802] w=0.3050 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)M305.CB) [> 3.8574 = 6.4290 < 8.3577] w=0.3032 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)Q186.CB) [> 4.4184 = 7.3640 < 9.5732] w=0.3017 to align # Constraint # added constraint: constraint((T0294)L23.CB, (T0294)A310.CB) [> 3.5171 = 5.8619 < 7.6205] w=0.3012 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)Q33.CB) [> 4.2384 = 7.0640 < 9.1832] w=0.2985 to align # Constraint # added constraint: constraint((T0294)D61.CB, (T0294)H87.CB) [> 4.0369 = 6.7282 < 8.7466] w=0.2981 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)C288.CB) [> 4.3012 = 7.1686 < 9.3192] w=0.2981 to align # Constraint # added constraint: constraint((T0294)G19.CA, (T0294)S306.CB) [> 3.1483 = 5.2471 < 6.8213] w=0.2977 to align # Constraint # added constraint: constraint((T0294)G184.CA, (T0294)C216.CB) [> 4.4946 = 7.4911 < 9.7384] w=0.2975 to align # Constraint # added constraint: constraint((T0294)S154.CB, (T0294)Q178.CB) [> 4.2721 = 7.1201 < 9.2561] w=0.2952 to align # Constraint # added constraint: constraint((T0294)C216.CB, (T0294)R245.CB) [> 4.3790 = 7.2984 < 9.4879] w=0.2921 to align # Constraint # added constraint: constraint((T0294)I15.CB, (T0294)Q33.CB) [> 3.5398 = 5.8997 < 7.6696] w=0.2912 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)L291.CB) [> 4.3610 = 7.2683 < 9.4488] w=0.2896 to align # Constraint # added constraint: constraint((T0294)T110.CB, (T0294)A297.CB) [> 4.2538 = 7.0896 < 9.2165] w=0.2896 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)A52.CB) [> 2.8374 = 4.7291 < 6.1478] w=0.2891 to align # Constraint # added constraint: constraint((T0294)E46.CB, (T0294)I67.CB) [> 3.9241 = 6.5403 < 8.5023] w=0.2886 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)A52.CB) [> 2.8312 = 4.7187 < 6.1343] w=0.2882 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)L205.CB) [> 3.2507 = 5.4178 < 7.0431] w=0.2843 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)S296.CB) [> 3.4635 = 5.7726 < 7.5043] w=0.2811 to align # Constraint # added constraint: constraint((T0294)T110.CB, (T0294)S296.CB) [> 3.1478 = 5.2464 < 6.8203] w=0.2811 to align # Constraint # added constraint: constraint((T0294)R125.CB, (T0294)C147.CB) [> 3.9925 = 6.6541 < 8.6504] w=0.2808 to align # Constraint # added constraint: constraint((T0294)R179.CB, (T0294)Q196.CB) [> 3.9597 = 6.5996 < 8.5794] w=0.2772 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)F195.CB) [> 3.9913 = 6.6521 < 8.6477] w=0.2765 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)S82.CB) [> 3.6081 = 6.0135 < 7.8175] w=0.2726 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)S79.CB) [> 3.8317 = 6.3861 < 8.3020] w=0.2718 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)R188.CB) [> 4.2268 = 7.0447 < 9.1581] w=0.2715 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)G54.CA) [> 4.2565 = 7.0942 < 9.2225] w=0.2712 to align # Constraint # added constraint: constraint((T0294)G72.CA, (T0294)I98.CB) [> 4.0099 = 6.6832 < 8.6882] w=0.2711 to align # Constraint # added constraint: constraint((T0294)P187.CB, (T0294)F199.CB) [> 3.8655 = 6.4426 < 8.3753] w=0.2709 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)L55.CB) [> 4.2454 = 7.0757 < 9.1984] w=0.2709 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)L23.CB) [> 3.7907 = 6.3179 < 8.2132] w=0.2699 to align # Constraint # added constraint: constraint((T0294)R179.CB, (T0294)A197.CB) [> 3.3421 = 5.5702 < 7.2413] w=0.2690 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)H87.CB) [> 3.7821 = 6.3035 < 8.1946] w=0.2641 to align # Constraint # added constraint: constraint((T0294)Q251.CB, (T0294)T271.CB) [> 4.2274 = 7.0456 < 9.1593] w=0.2638 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)A52.CB) [> 3.8367 = 6.3945 < 8.3129] w=0.2633 to align # Constraint # added constraint: constraint((T0294)V49.CB, (T0294)L75.CB) [> 3.8880 = 6.4800 < 8.4241] w=0.2630 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)K262.CB) [> 4.1446 = 6.9077 < 8.9800] w=0.2622 to align # Constraint # added constraint: constraint((T0294)V77.CB, (T0294)L317.CB) [> 3.9819 = 6.6365 < 8.6274] w=0.2586 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)E30.CB) [> 4.0079 = 6.6798 < 8.6838] w=0.2557 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)C29.CB) [> 3.2064 = 5.3440 < 6.9472] w=0.2557 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)M81.CB) [> 3.6776 = 6.1293 < 7.9681] w=0.2555 to align # Constraint # added constraint: constraint((T0294)H62.CB, (T0294)L88.CB) [> 4.5427 = 7.5711 < 9.8425] w=0.2555 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)G101.CA) [> 4.3761 = 7.2936 < 9.4816] w=0.2555 to align # Constraint # added constraint: constraint((T0294)L118.CB, (T0294)D269.CB) [> 4.2531 = 7.0885 < 9.2150] w=0.2555 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)L268.CB) [> 4.4576 = 7.4294 < 9.6582] w=0.2555 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)P292.CB) [> 4.4949 = 7.4914 < 9.7388] w=0.2555 to align # Constraint # added constraint: constraint((T0294)V249.CB, (T0294)L268.CB) [> 4.5287 = 7.5479 < 9.8122] w=0.2555 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)G51.CA) [> 3.6087 = 6.0144 < 7.8188] w=0.2548 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)L56.CB) [> 2.8873 = 4.8122 < 6.2559] w=0.2548 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)V239.CB) [> 3.8000 = 6.3334 < 8.2333] w=0.2513 to align # Constraint # added constraint: constraint((T0294)G19.CA, (T0294)A310.CB) [> 3.2255 = 5.3759 < 6.9887] w=0.2496 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)D35.CB) [> 4.1462 = 6.9104 < 8.9835] w=0.2487 to align # Constraint # added constraint: constraint((T0294)R99.CB, (T0294)M322.CB) [> 3.8281 = 6.3802 < 8.2943] w=0.2470 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)S79.CB) [> 4.4690 = 7.4483 < 9.6827] w=0.2470 to align # Constraint # added constraint: constraint((T0294)V49.CB, (T0294)I67.CB) [> 3.8078 = 6.3464 < 8.2503] w=0.2470 to align # Constraint # added constraint: constraint((T0294)A22.CB, (T0294)A310.CB) [> 3.1232 = 5.2053 < 6.7669] w=0.2466 to align # Constraint # added constraint: constraint((T0294)V63.CB, (T0294)I93.CB) [> 4.5341 = 7.5568 < 9.8239] w=0.2463 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)G54.CA) [> 3.1051 = 5.1752 < 6.7278] w=0.2463 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)H53.CB) [> 3.3125 = 5.5209 < 7.1772] w=0.2463 to align # Constraint # added constraint: constraint((T0294)E46.CB, (T0294)A70.CB) [> 3.2494 = 5.4158 < 7.0405] w=0.2461 to align # Constraint # added constraint: constraint((T0294)A50.CB, (T0294)A71.CB) [> 4.0602 = 6.7669 < 8.7970] w=0.2460 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)W34.CB) [> 3.9400 = 6.5666 < 8.5366] w=0.2450 to align # Constraint # added constraint: constraint((T0294)L75.CB, (T0294)R96.CB) [> 4.4770 = 7.4616 < 9.7001] w=0.2434 to align # Constraint # added constraint: constraint((T0294)P275.CB, (T0294)P292.CB) [> 4.1876 = 6.9793 < 9.0730] w=0.2418 to align # Constraint # added constraint: constraint((T0294)G101.CA, (T0294)M322.CB) [> 3.8007 = 6.3344 < 8.2348] w=0.2385 to align # Constraint # added constraint: constraint((T0294)R99.CB, (T0294)E325.CB) [> 3.6989 = 6.1648 < 8.0142] w=0.2385 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)K76.CB) [> 3.2391 = 5.3986 < 7.0181] w=0.2385 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)E274.CB) [> 4.3526 = 7.2544 < 9.4307] w=0.2383 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)H53.CB) [> 4.0759 = 6.7932 < 8.8311] w=0.2380 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)P104.CB) [> 3.7616 = 6.2693 < 8.1501] w=0.2377 to align # Constraint # added constraint: constraint((T0294)A42.CB, (T0294)I67.CB) [> 3.5786 = 5.9643 < 7.7535] w=0.2374 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)L181.CB) [> 4.3200 = 7.2000 < 9.3600] w=0.2358 to align # Constraint # added constraint: constraint((T0294)G165.CA, (T0294)L181.CB) [> 4.5305 = 7.5508 < 9.8160] w=0.2340 to align # Constraint # added constraint: constraint((T0294)C29.CB, (T0294)L314.CB) [> 4.0576 = 6.7627 < 8.7915] w=0.2302 to align # Constraint # added constraint: constraint((T0294)G101.CA, (T0294)S324.CB) [> 3.3766 = 5.6277 < 7.3160] w=0.2300 to align # Constraint # added constraint: constraint((T0294)Y102.CB, (T0294)S324.CB) [> 3.3320 = 5.5533 < 7.2194] w=0.2300 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)I290.CB) [> 4.4993 = 7.4989 < 9.7486] w=0.2300 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)A309.CB) [> 3.5303 = 5.8838 < 7.6490] w=0.2300 to align # Constraint # added constraint: constraint((T0294)R99.CB, (T0294)G316.CA) [> 4.1906 = 6.9843 < 9.0796] w=0.2300 to align # Constraint # added constraint: constraint((T0294)V106.CB, (T0294)S296.CB) [> 4.4828 = 7.4714 < 9.7128] w=0.2300 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)N287.CB) [> 4.2527 = 7.0879 < 9.2142] w=0.2300 to align # Constraint # added constraint: constraint((T0294)E128.CB, (T0294)K286.CB) [> 3.0589 = 5.0981 < 6.6275] w=0.2300 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)V49.CB) [> 3.4181 = 5.6969 < 7.4060] w=0.2299 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)G267.CA) [> 4.5505 = 7.5841 < 9.8594] w=0.2295 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)G54.CA) [> 3.9267 = 6.5444 < 8.5078] w=0.2295 to align # Constraint # added constraint: constraint((T0294)L114.CB, (T0294)A297.CB) [> 3.4387 = 5.7312 < 7.4505] w=0.2292 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)Y102.CB) [> 3.3794 = 5.6323 < 7.3220] w=0.2285 to align # Constraint # added constraint: constraint((T0294)A71.CB, (T0294)I98.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.2265 to align # Constraint # added constraint: constraint((T0294)L119.CB, (T0294)I243.CB) [> 3.6055 = 6.0092 < 7.8119] w=0.2253 to align # Constraint # added constraint: constraint((T0294)V249.CB, (T0294)S272.CB) [> 4.2336 = 7.0560 < 9.1728] w=0.2243 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)L313.CB) [> 3.9196 = 6.5327 < 8.4925] w=0.2215 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)L313.CB) [> 3.9760 = 6.6267 < 8.6147] w=0.2210 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)F211.CB) [> 4.4219 = 7.3698 < 9.5807] w=0.2209 to align # Constraint # added constraint: constraint((T0294)A206.CB, (T0294)K235.CB) [> 4.5213 = 7.5355 < 9.7961] w=0.2189 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)Q33.CB) [> 4.2647 = 7.1079 < 9.2402] w=0.2166 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)A310.CB) [> 4.3743 = 7.2904 < 9.4776] w=0.2160 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)V77.CB) [> 4.1273 = 6.8788 < 8.9424] w=0.2158 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)T183.CB) [> 4.3275 = 7.2126 < 9.3764] w=0.2156 to align # Constraint # added constraint: constraint((T0294)A266.CB, (T0294)L285.CB) [> 4.5774 = 7.6290 < 9.9177] w=0.2130 to align # Constraint # added constraint: constraint((T0294)G101.CA, (T0294)E325.CB) [> 3.2709 = 5.4515 < 7.0870] w=0.2130 to align # Constraint # added constraint: constraint((T0294)K76.CB, (T0294)G97.CA) [> 4.1790 = 6.9649 < 9.0544] w=0.2130 to align # Constraint # added constraint: constraint((T0294)A22.CB, (T0294)L307.CB) [> 4.0117 = 6.6861 < 8.6919] w=0.2130 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)N74.CB) [> 3.9408 = 6.5680 < 8.5384] w=0.2129 to align # Constraint # added constraint: constraint((T0294)C29.CB, (T0294)L317.CB) [> 3.9851 = 6.6418 < 8.6344] w=0.2122 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)P104.CB) [> 3.9164 = 6.5273 < 8.4854] w=0.2122 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)P104.CB) [> 3.4236 = 5.7060 < 7.4178] w=0.2122 to align # Constraint # added constraint: constraint((T0294)F180.CB, (T0294)Q208.CB) [> 3.8586 = 6.4311 < 8.3604] w=0.2118 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)C57.CB) [> 4.2229 = 7.0383 < 9.1497] w=0.2115 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)V289.CB) [> 4.2848 = 7.1413 < 9.2837] w=0.2100 to align # Constraint # added constraint: constraint((T0294)D109.CB, (T0294)R163.CB) [> 3.4049 = 5.6749 < 7.3773] w=0.2092 to align # Constraint # added constraint: constraint((T0294)T222.CB, (T0294)D247.CB) [> 4.2170 = 7.0283 < 9.1368] w=0.2089 to align # Constraint # added constraint: constraint((T0294)G184.CA, (T0294)T202.CB) [> 4.0445 = 6.7408 < 8.7631] w=0.2085 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)M81.CB) [> 4.0738 = 6.7897 < 8.8266] w=0.2055 to align # Constraint # added constraint: constraint((T0294)A259.CB, (T0294)L285.CB) [> 4.3389 = 7.2315 < 9.4010] w=0.2044 to align # Constraint # added constraint: constraint((T0294)T271.CB, (T0294)L282.CB) [> 4.3906 = 7.3177 < 9.5131] w=0.2044 to align # Constraint # added constraint: constraint((T0294)T271.CB, (T0294)H293.CB) [> 4.5046 = 7.5077 < 9.7600] w=0.2044 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)S296.CB) [> 4.1025 = 6.8376 < 8.8888] w=0.2044 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)G295.CA) [> 4.2679 = 7.1132 < 9.2471] w=0.2044 to align # Constraint # added constraint: constraint((T0294)R125.CB, (T0294)N287.CB) [> 4.2083 = 7.0138 < 9.1179] w=0.2044 to align # Constraint # added constraint: constraint((T0294)P127.CB, (T0294)C288.CB) [> 4.4318 = 7.3863 < 9.6022] w=0.2044 to align # Constraint # added constraint: constraint((T0294)R20.CB, (T0294)S306.CB) [> 4.1373 = 6.8955 < 8.9642] w=0.2044 to align # Constraint # added constraint: constraint((T0294)A52.CB, (T0294)A71.CB) [> 4.0336 = 6.7227 < 8.7395] w=0.2044 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)L55.CB) [> 4.4290 = 7.3818 < 9.5963] w=0.2041 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)L56.CB) [> 4.1885 = 6.9809 < 9.0751] w=0.2040 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)L58.CB) [> 2.6493 = 4.4155 < 5.7402] w=0.2040 to align # Constraint # added constraint: constraint((T0294)I15.CB, (T0294)S306.CB) [> 3.5300 = 5.8833 < 7.6483] w=0.2039 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)I78.CB) [> 3.7698 = 6.2830 < 8.1679] w=0.2037 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)L45.CB) [> 4.2516 = 7.0861 < 9.2119] w=0.2007 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)P187.CB) [> 3.6824 = 6.1373 < 7.9785] w=0.1959 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)M81.CB) [> 3.6494 = 6.0823 < 7.9071] w=0.1959 to align # Constraint # added constraint: constraint((T0294)L23.CB, (T0294)L313.CB) [> 4.3405 = 7.2341 < 9.4044] w=0.1954 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)L58.CB) [> 3.9860 = 6.6433 < 8.6363] w=0.1952 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)S79.CB) [> 3.2560 = 5.4266 < 7.0546] w=0.1951 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)Q196.CB) [> 3.5535 = 5.9225 < 7.6992] w=0.1932 to align # Constraint # added constraint: constraint((T0294)L45.CB, (T0294)I67.CB) [> 3.4489 = 5.7481 < 7.4726] w=0.1895 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)I290.CB) [> 3.1031 = 5.1719 < 6.7234] w=0.1872 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)C57.CB) [> 3.6368 = 6.0614 < 7.8798] w=0.1869 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)G48.CA) [> 3.9234 = 6.5389 < 8.5006] w=0.1869 to align # Constraint # added constraint: constraint((T0294)E18.CB, (T0294)S306.CB) [> 3.7613 = 6.2689 < 8.1496] w=0.1869 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)A264.CB) [> 4.0900 = 6.8167 < 8.8618] w=0.1864 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)V289.CB) [> 2.9164 = 4.8606 < 6.3188] w=0.1850 to align # Constraint # added constraint: constraint((T0294)T183.CB, (T0294)E204.CB) [> 4.4541 = 7.4234 < 9.6505] w=0.1816 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)R245.CB) [> 3.9150 = 6.5251 < 8.4826] w=0.1808 to align # Constraint # added constraint: constraint((T0294)Y255.CB, (T0294)L285.CB) [> 3.5955 = 5.9925 < 7.7903] w=0.1789 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)S296.CB) [> 3.8624 = 6.4373 < 8.3685] w=0.1789 to align # Constraint # added constraint: constraint((T0294)T271.CB, (T0294)I290.CB) [> 4.4106 = 7.3510 < 9.5563] w=0.1789 to align # Constraint # added constraint: constraint((T0294)P104.CB, (T0294)R163.CB) [> 4.0190 = 6.6984 < 8.7079] w=0.1789 to align # Constraint # added constraint: constraint((T0294)Y102.CB, (T0294)L326.CB) [> 3.3664 = 5.6107 < 7.2940] w=0.1789 to align # Constraint # added constraint: constraint((T0294)G101.CA, (T0294)L326.CB) [> 3.0000 = 5.0000 < 6.4999] w=0.1789 to align # Constraint # added constraint: constraint((T0294)V100.CB, (T0294)L326.CB) [> 2.5810 = 4.3017 < 5.5922] w=0.1789 to align # Constraint # added constraint: constraint((T0294)C29.CB, (T0294)L313.CB) [> 4.4508 = 7.4180 < 9.6434] w=0.1789 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)G267.CA) [> 4.5024 = 7.5040 < 9.7552] w=0.1786 to align # Constraint # added constraint: constraint((T0294)A206.CB, (T0294)A238.CB) [> 4.5483 = 7.5805 < 9.8546] w=0.1775 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)Y102.CB) [> 3.1713 = 5.2856 < 6.8712] w=0.1749 to align # Constraint # added constraint: constraint((T0294)G184.CA, (T0294)V200.CB) [> 4.2108 = 7.0181 < 9.1235] w=0.1725 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)I164.CB) [> 2.7209 = 4.5348 < 5.8953] w=0.1723 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)L291.CB) [> 3.0193 = 5.0322 < 6.5419] w=0.1707 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)L291.CB) [> 4.1170 = 6.8616 < 8.9201] w=0.1707 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)T80.CB) [> 4.6299 = 7.7165 < 10.0314] w=0.1704 to align # Constraint # added constraint: constraint((T0294)A26.CB, (T0294)L314.CB) [> 3.3359 = 5.5599 < 7.2278] w=0.1699 to align # Constraint # added constraint: constraint((T0294)W34.CB, (T0294)E44.CB) [> 3.9631 = 6.6052 < 8.5868] w=0.1676 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)R185.CB) [> 4.4253 = 7.3754 < 9.5880] w=0.1672 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)I290.CB) [> 3.9490 = 6.5817 < 8.5562] w=0.1668 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)I243.CB) [> 4.1704 = 6.9506 < 9.0358] w=0.1667 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)A257.CB) [> 4.1761 = 6.9601 < 9.0482] w=0.1642 to align # Constraint # added constraint: constraint((T0294)S36.CB, (T0294)L45.CB) [> 4.0630 = 6.7716 < 8.8031] w=0.1637 to align # Constraint # added constraint: constraint((T0294)L225.CB, (T0294)S244.CB) [> 4.5497 = 7.5828 < 9.8576] w=0.1634 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)P292.CB) [> 3.7782 = 6.2969 < 8.1860] w=0.1622 to align # Constraint # added constraint: constraint((T0294)L58.CB, (T0294)H87.CB) [> 4.3779 = 7.2965 < 9.4855] w=0.1618 to align # Constraint # added constraint: constraint((T0294)E32.CB, (T0294)G48.CA) [> 3.7543 = 6.2572 < 8.1343] w=0.1618 to align # Constraint # added constraint: constraint((T0294)S296.CB, (T0294)M305.CB) [> 4.3650 = 7.2749 < 9.4574] w=0.1617 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)L90.CB) [> 3.3734 = 5.6224 < 7.3091] w=0.1611 to align # Constraint # added constraint: constraint((T0294)S60.CB, (T0294)S79.CB) [> 3.8684 = 6.4473 < 8.3815] w=0.1611 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)H53.CB) [> 3.1934 = 5.3223 < 6.9190] w=0.1609 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)L59.CB) [> 3.7591 = 6.2652 < 8.1448] w=0.1607 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)L88.CB) [> 4.2712 = 7.1186 < 9.2542] w=0.1599 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)N250.CB) [> 4.5230 = 7.5383 < 9.7998] w=0.1578 to align # Constraint # added constraint: constraint((T0294)A221.CB, (T0294)S244.CB) [> 3.3424 = 5.5706 < 7.2418] w=0.1552 to align # Constraint # added constraint: constraint((T0294)A50.CB, (T0294)A73.CB) [> 3.7481 = 6.2469 < 8.1209] w=0.1533 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)L326.CB) [> 3.3384 = 5.5640 < 7.2333] w=0.1533 to align # Constraint # added constraint: constraint((T0294)D86.CB, (T0294)R245.CB) [> 4.0480 = 6.7466 < 8.7706] w=0.1533 to align # Constraint # added constraint: constraint((T0294)L258.CB, (T0294)L282.CB) [> 4.4759 = 7.4597 < 9.6977] w=0.1533 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)T298.CB) [> 4.0576 = 6.7627 < 8.7916] w=0.1533 to align # Constraint # added constraint: constraint((T0294)A129.CB, (T0294)L146.CB) [> 3.1119 = 5.1864 < 6.7423] w=0.1533 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)L291.CB) [> 4.6169 = 7.6949 < 10.0033] w=0.1533 to align # Constraint # added constraint: constraint((T0294)D109.CB, (T0294)T301.CB) [> 4.1829 = 6.9715 < 9.0630] w=0.1533 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)V289.CB) [> 3.7102 = 6.1837 < 8.0388] w=0.1528 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)L23.CB) [> 4.2160 = 7.0267 < 9.1348] w=0.1527 to align # Constraint # added constraint: constraint((T0294)T111.CB, (T0294)I294.CB) [> 3.1031 = 5.1719 < 6.7235] w=0.1526 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)L291.CB) [> 3.7654 = 6.2756 < 8.1582] w=0.1503 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)A264.CB) [> 4.1103 = 6.8505 < 8.9057] w=0.1467 to align # Constraint # added constraint: constraint((T0294)T121.CB, (T0294)L146.CB) [> 3.8828 = 6.4714 < 8.4128] w=0.1464 to align # Constraint # added constraint: constraint((T0294)N311.CB, (T0294)P323.CB) [> 4.1121 = 6.8534 < 8.9094] w=0.1451 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)S60.CB) [> 3.6440 = 6.0734 < 7.8954] w=0.1446 to align # Constraint # added constraint: constraint((T0294)I15.CB, (T0294)L58.CB) [> 3.5798 = 5.9663 < 7.7562] w=0.1443 to align # Constraint # added constraint: constraint((T0294)E32.CB, (T0294)H53.CB) [> 3.3355 = 5.5592 < 7.2270] w=0.1443 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)V77.CB) [> 3.8026 = 6.3377 < 8.2390] w=0.1441 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)A206.CB) [> 4.3874 = 7.3123 < 9.5060] w=0.1429 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)S217.CB) [> 4.0729 = 6.7881 < 8.8245] w=0.1427 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)L317.CB) [> 4.1476 = 6.9127 < 8.9865] w=0.1421 to align # Constraint # added constraint: constraint((T0294)A27.CB, (T0294)A310.CB) [> 4.4078 = 7.3463 < 9.5501] w=0.1419 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)I93.CB) [> 3.7933 = 6.3221 < 8.2187] w=0.1411 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)F211.CB) [> 4.4809 = 7.4681 < 9.7086] w=0.1411 to align # Constraint # added constraint: constraint((T0294)A238.CB, (T0294)V289.CB) [> 4.4664 = 7.4439 < 9.6771] w=0.1396 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)C288.CB) [> 3.7989 = 6.3316 < 8.2310] w=0.1390 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)V239.CB) [> 3.2511 = 5.4185 < 7.0441] w=0.1390 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)C147.CB) [> 3.7705 = 6.2842 < 8.1695] w=0.1379 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)I290.CB) [> 4.5861 = 7.6434 < 9.9365] w=0.1366 to align # Constraint # added constraint: constraint((T0294)I15.CB, (T0294)L56.CB) [> 3.8358 = 6.3930 < 8.3109] w=0.1362 to align # Constraint # added constraint: constraint((T0294)K76.CB, (T0294)G316.CA) [> 4.3777 = 7.2962 < 9.4851] w=0.1356 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)I78.CB) [> 4.0753 = 6.7921 < 8.8297] w=0.1356 to align # Constraint # added constraint: constraint((T0294)R14.CB, (T0294)Q33.CB) [> 3.6920 = 6.1533 < 7.9993] w=0.1353 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)V213.CB) [> 4.3223 = 7.2039 < 9.3650] w=0.1336 to align # Constraint # added constraint: constraint((T0294)L6.CB, (T0294)E30.CB) [> 3.6527 = 6.0878 < 7.9142] w=0.1329 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)L291.CB) [> 3.6141 = 6.0236 < 7.8306] w=0.1281 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)S217.CB) [> 3.9308 = 6.5514 < 8.5168] w=0.1278 to align # Constraint # added constraint: constraint((T0294)D86.CB, (T0294)S217.CB) [> 4.0768 = 6.7947 < 8.8331] w=0.1278 to align # Constraint # added constraint: constraint((T0294)D86.CB, (T0294)L218.CB) [> 2.7654 = 4.6090 < 5.9917] w=0.1278 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)D269.CB) [> 4.6723 = 7.7872 < 10.1234] w=0.1278 to align # Constraint # added constraint: constraint((T0294)L45.CB, (T0294)D61.CB) [> 3.8577 = 6.4294 < 8.3583] w=0.1278 to align # Constraint # added constraint: constraint((T0294)R14.CB, (T0294)L58.CB) [> 4.1562 = 6.9270 < 9.0051] w=0.1277 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)C216.CB) [> 4.2789 = 7.1315 < 9.2710] w=0.1273 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)I294.CB) [> 3.5303 = 5.8838 < 7.6489] w=0.1270 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)R163.CB) [> 3.9952 = 6.6586 < 8.6562] w=0.1270 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)V156.CB) [> 4.5379 = 7.5631 < 9.8321] w=0.1270 to align # Constraint # added constraint: constraint((T0294)V116.CB, (T0294)V213.CB) [> 4.5129 = 7.5215 < 9.7780] w=0.1258 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)I67.CB) [> 4.1958 = 6.9930 < 9.0909] w=0.1245 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)V289.CB) [> 3.9710 = 6.6184 < 8.6039] w=0.1245 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)Q33.CB) [> 3.8344 = 6.3906 < 8.3078] w=0.1240 to align # Constraint # added constraint: constraint((T0294)L276.CB, (T0294)P292.CB) [> 3.7377 = 6.2295 < 8.0984] w=0.1226 to align # Constraint # added constraint: constraint((T0294)L276.CB, (T0294)I290.CB) [> 3.7896 = 6.3160 < 8.2108] w=0.1225 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)S79.CB) [> 3.8349 = 6.3915 < 8.3089] w=0.1203 to align # Constraint # added constraint: constraint((T0294)E132.CB, (T0294)K142.CB) [> 4.3177 = 7.1962 < 9.3550] w=0.1193 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)L90.CB) [> 4.3148 = 7.1913 < 9.3487] w=0.1192 to align # Constraint # added constraint: constraint((T0294)Q251.CB, (T0294)P273.CB) [> 4.3284 = 7.2139 < 9.3781] w=0.1188 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)G54.CA) [> 4.1382 = 6.8970 < 8.9661] w=0.1183 to align # Constraint # added constraint: constraint((T0294)V106.CB, (T0294)R302.CB) [> 4.5233 = 7.5388 < 9.8004] w=0.1183 to align # Constraint # added constraint: constraint((T0294)C226.CB, (T0294)A257.CB) [> 4.1020 = 6.8367 < 8.8878] w=0.1177 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)N242.CB) [> 4.4822 = 7.4704 < 9.7115] w=0.1177 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)D269.CB) [> 4.0514 = 6.7523 < 8.7780] w=0.1173 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)G101.CA) [> 3.9955 = 6.6592 < 8.6570] w=0.1153 to align # Constraint # added constraint: constraint((T0294)E274.CB, (T0294)P292.CB) [> 4.2210 = 7.0351 < 9.1456] w=0.1141 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)A265.CB) [> 4.1009 = 6.8348 < 8.8853] w=0.1141 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)L291.CB) [> 3.8783 = 6.4638 < 8.4029] w=0.1140 to align # Constraint # added constraint: constraint((T0294)A238.CB, (T0294)C288.CB) [> 2.9654 = 4.9423 < 6.4250] w=0.1140 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)C288.CB) [> 4.6565 = 7.7609 < 10.0892] w=0.1140 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)C288.CB) [> 3.3961 = 5.6601 < 7.3582] w=0.1140 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)L317.CB) [> 3.7444 = 6.2407 < 8.1130] w=0.1138 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)M81.CB) [> 4.0587 = 6.7645 < 8.7939] w=0.1118 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)S79.CB) [> 4.1142 = 6.8570 < 8.9141] w=0.1118 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)I78.CB) [> 3.4679 = 5.7799 < 7.5138] w=0.1118 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)P104.CB) [> 4.3744 = 7.2906 < 9.4778] w=0.1107 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)R245.CB) [> 4.2693 = 7.1155 < 9.2501] w=0.1107 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)A309.CB) [> 3.6439 = 6.0731 < 7.8950] w=0.1107 to align # Constraint # added constraint: constraint((T0294)A26.CB, (T0294)L313.CB) [> 4.3162 = 7.1936 < 9.3517] w=0.1105 to align # Constraint # added constraint: constraint((T0294)A26.CB, (T0294)L317.CB) [> 3.9879 = 6.6465 < 8.6404] w=0.1103 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)H293.CB) [> 3.3037 = 5.5061 < 7.1580] w=0.1100 to align # Constraint # added constraint: constraint((T0294)Q33.CB, (T0294)H53.CB) [> 4.1120 = 6.8533 < 8.9093] w=0.1100 to align # Constraint # added constraint: constraint((T0294)Q33.CB, (T0294)G54.CA) [> 3.2168 = 5.3613 < 6.9697] w=0.1100 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)H293.CB) [> 4.1788 = 6.9647 < 9.0541] w=0.1100 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)T237.CB) [> 3.2833 = 5.4721 < 7.1138] w=0.1086 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)A265.CB) [> 3.7102 = 6.1836 < 8.0387] w=0.1065 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)L75.CB) [> 3.0975 = 5.1626 < 6.7113] w=0.1043 to align # Constraint # added constraint: constraint((T0294)T219.CB, (T0294)N250.CB) [> 3.2451 = 5.4085 < 7.0311] w=0.1043 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)K76.CB) [> 3.3884 = 5.6473 < 7.3415] w=0.1033 to align # Constraint # added constraint: constraint((T0294)K8.CB, (T0294)K76.CB) [> 3.3598 = 5.5997 < 7.2796] w=0.1033 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)I78.CB) [> 4.1454 = 6.9089 < 8.9816] w=0.1033 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)S79.CB) [> 3.0503 = 5.0838 < 6.6090] w=0.1033 to align # Constraint # added constraint: constraint((T0294)T271.CB, (T0294)H280.CB) [> 3.7068 = 6.1780 < 8.0314] w=0.1022 to align # Constraint # added constraint: constraint((T0294)L107.CB, (T0294)A297.CB) [> 4.5285 = 7.5476 < 9.8118] w=0.1022 to align # Constraint # added constraint: constraint((T0294)T108.CB, (T0294)G165.CA) [> 4.5787 = 7.6312 < 9.9206] w=0.1022 to align # Constraint # added constraint: constraint((T0294)T121.CB, (T0294)G267.CA) [> 4.4196 = 7.3661 < 9.5759] w=0.1022 to align # Constraint # added constraint: constraint((T0294)G19.CA, (T0294)R302.CB) [> 4.1467 = 6.9112 < 8.9846] w=0.1022 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)S217.CB) [> 3.6195 = 6.0325 < 7.8422] w=0.1010 to align # Constraint # added constraint: constraint((T0294)I15.CB, (T0294)V31.CB) [> 4.4957 = 7.4929 < 9.7408] w=0.1007 to align # Constraint # added constraint: constraint((T0294)T183.CB, (T0294)C216.CB) [> 4.5917 = 7.6529 < 9.9487] w=0.1001 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)A297.CB) [> 3.9191 = 6.5318 < 8.4914] w=0.0992 to align # Constraint # added constraint: constraint((T0294)L6.CB, (T0294)C29.CB) [> 4.1709 = 6.9515 < 9.0369] w=0.0989 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)N287.CB) [> 3.8387 = 6.3979 < 8.3172] w=0.0970 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)K286.CB) [> 3.1929 = 5.3214 < 6.9179] w=0.0970 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)P273.CB) [> 2.9733 = 4.9555 < 6.4421] w=0.0960 to align # Constraint # added constraint: constraint((T0294)P220.CB, (T0294)D247.CB) [> 4.3739 = 7.2899 < 9.4769] w=0.0958 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)V77.CB) [> 3.7490 = 6.2484 < 8.1229] w=0.0958 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)V49.CB) [> 3.4602 = 5.7670 < 7.4971] w=0.0937 to align # Constraint # added constraint: constraint((T0294)V31.CB, (T0294)A52.CB) [> 3.1348 = 5.2247 < 6.7921] w=0.0932 to align # Constraint # added constraint: constraint((T0294)V31.CB, (T0294)H53.CB) [> 4.1272 = 6.8787 < 8.9423] w=0.0932 to align # Constraint # added constraint: constraint((T0294)Y149.CB, (T0294)T237.CB) [> 4.5989 = 7.6648 < 9.9643] w=0.0930 to align # Constraint # added constraint: constraint((T0294)A24.CB, (T0294)G48.CA) [> 4.1006 = 6.8343 < 8.8846] w=0.0930 to align # Constraint # added constraint: constraint((T0294)R14.CB, (T0294)L59.CB) [> 3.9327 = 6.5545 < 8.5208] w=0.0927 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)D105.CB) [> 4.0613 = 6.7688 < 8.7995] w=0.0927 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)S60.CB) [> 4.1014 = 6.8356 < 8.8863] w=0.0923 to align # Constraint # added constraint: constraint((T0294)R5.CB, (T0294)C29.CB) [> 4.0931 = 6.8218 < 8.8683] w=0.0920 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)H293.CB) [> 4.2318 = 7.0530 < 9.1689] w=0.0900 to align # Constraint # added constraint: constraint((T0294)S117.CB, (T0294)A309.CB) [> 4.5221 = 7.5369 < 9.7979] w=0.0900 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)K286.CB) [> 3.3749 = 5.6248 < 7.3123] w=0.0884 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)I290.CB) [> 4.4702 = 7.4503 < 9.6854] w=0.0879 to align # Constraint # added constraint: constraint((T0294)L59.CB, (T0294)D86.CB) [> 4.2323 = 7.0538 < 9.1699] w=0.0852 to align # Constraint # added constraint: constraint((T0294)S117.CB, (T0294)A297.CB) [> 4.3610 = 7.2684 < 9.4489] w=0.0851 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)D269.CB) [> 3.4055 = 5.6758 < 7.3785] w=0.0842 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)D269.CB) [> 4.3731 = 7.2885 < 9.4750] w=0.0842 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)A265.CB) [> 4.3796 = 7.2993 < 9.4892] w=0.0836 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)S296.CB) [> 4.3019 = 7.1699 < 9.3209] w=0.0822 to align # Constraint # added constraint: constraint((T0294)W138.CB, (T0294)T237.CB) [> 3.7699 = 6.2832 < 8.1682] w=0.0804 to align # Constraint # added constraint: constraint((T0294)L283.CB, (T0294)P292.CB) [> 4.1206 = 6.8677 < 8.9279] w=0.0799 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)S272.CB) [> 4.3169 = 7.1948 < 9.3532] w=0.0797 to align # Constraint # added constraint: constraint((T0294)T108.CB, (T0294)G162.CA) [> 4.7592 = 7.9321 < 10.3117] w=0.0792 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)A264.CB) [> 4.1964 = 6.9939 < 9.0921] w=0.0786 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)S244.CB) [> 3.7191 = 6.1986 < 8.0581] w=0.0781 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)L218.CB) [> 4.6064 = 7.6774 < 9.9806] w=0.0767 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)T108.CB) [> 4.0533 = 6.7555 < 8.7822] w=0.0767 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)R245.CB) [> 3.6988 = 6.1647 < 8.0141] w=0.0767 to align # Constraint # added constraint: constraint((T0294)L120.CB, (T0294)Y149.CB) [> 4.3495 = 7.2491 < 9.4239] w=0.0767 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)V213.CB) [> 4.2279 = 7.0465 < 9.1605] w=0.0767 to align # Constraint # added constraint: constraint((T0294)V4.CB, (T0294)C29.CB) [> 2.9687 = 4.9479 < 6.4323] w=0.0767 to align # Constraint # added constraint: constraint((T0294)V4.CB, (T0294)D28.CB) [> 3.4322 = 5.7203 < 7.4364] w=0.0767 to align # Constraint # added constraint: constraint((T0294)A112.CB, (T0294)G162.CA) [> 4.5216 = 7.5360 < 9.7968] w=0.0766 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)L291.CB) [> 3.6287 = 6.0479 < 7.8623] w=0.0762 to align # Constraint # added constraint: constraint((T0294)L6.CB, (T0294)D28.CB) [> 4.4570 = 7.4283 < 9.6568] w=0.0752 to align # Constraint # added constraint: constraint((T0294)R5.CB, (T0294)E30.CB) [> 3.4818 = 5.8030 < 7.5439] w=0.0750 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)E194.CB) [> 4.4169 = 7.3614 < 9.5698] w=0.0747 to align # Constraint # added constraint: constraint((T0294)A238.CB, (T0294)A265.CB) [> 4.4550 = 7.4250 < 9.6525] w=0.0739 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)T80.CB) [> 4.3099 = 7.1831 < 9.3380] w=0.0739 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)S244.CB) [> 3.9764 = 6.6274 < 8.6157] w=0.0732 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)P273.CB) [> 3.1870 = 5.3116 < 6.9051] w=0.0705 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)S244.CB) [> 4.3134 = 7.1891 < 9.3458] w=0.0703 to align # Constraint # added constraint: constraint((T0294)T202.CB, (T0294)N227.CB) [> 4.6580 = 7.7633 < 10.0922] w=0.0686 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)L258.CB) [> 2.7378 = 4.5631 < 5.9320] w=0.0685 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)L326.CB) [> 3.7316 = 6.2194 < 8.0852] w=0.0681 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)H293.CB) [> 4.2873 = 7.1455 < 9.2892] w=0.0681 to align # Constraint # added constraint: constraint((T0294)W141.CB, (T0294)V156.CB) [> 4.6901 = 7.8168 < 10.1619] w=0.0680 to align # Constraint # added constraint: constraint((T0294)R185.CB, (T0294)T202.CB) [> 3.8742 = 6.4571 < 8.3942] w=0.0678 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)P273.CB) [> 3.7738 = 6.2896 < 8.1765] w=0.0674 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)I243.CB) [> 4.2570 = 7.0951 < 9.2236] w=0.0672 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)G261.CA) [> 3.7675 = 6.2791 < 8.1628] w=0.0663 to align # Constraint # added constraint: constraint((T0294)Q251.CB, (T0294)G267.CA) [> 3.8028 = 6.3380 < 8.2394] w=0.0663 to align # Constraint # added constraint: constraint((T0294)R14.CB, (T0294)V83.CB) [> 4.3411 = 7.2352 < 9.4057] w=0.0662 to align # Constraint # added constraint: constraint((T0294)M7.CB, (T0294)V31.CB) [> 3.4072 = 5.6787 < 7.3823] w=0.0653 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)P292.CB) [> 2.7995 = 4.6658 < 6.0656] w=0.0632 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)T271.CB) [> 4.3024 = 7.1707 < 9.3219] w=0.0630 to align # Constraint # added constraint: constraint((T0294)W141.CB, (T0294)F211.CB) [> 4.1660 = 6.9433 < 9.0263] w=0.0627 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)P273.CB) [> 4.5683 = 7.6139 < 9.8980] w=0.0625 to align # Constraint # added constraint: constraint((T0294)W141.CB, (T0294)A238.CB) [> 3.8341 = 6.3901 < 8.3072] w=0.0622 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)N242.CB) [> 3.5140 = 5.8567 < 7.6137] w=0.0618 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)A264.CB) [> 3.9118 = 6.5197 < 8.4757] w=0.0617 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)R245.CB) [> 3.2360 = 5.3934 < 7.0114] w=0.0611 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)I78.CB) [> 4.1375 = 6.8959 < 8.9647] w=0.0607 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)T80.CB) [> 3.9221 = 6.5368 < 8.4978] w=0.0607 to align # Constraint # added constraint: constraint((T0294)M81.CB, (T0294)R302.CB) [> 4.6269 = 7.7116 < 10.0250] w=0.0596 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)G148.CA) [> 4.3903 = 7.3172 < 9.5123] w=0.0596 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)V83.CB) [> 2.6265 = 4.3775 < 5.6908] w=0.0596 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)G295.CA) [> 4.7269 = 7.8782 < 10.2417] w=0.0596 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)L268.CB) [> 4.1331 = 6.8886 < 8.9551] w=0.0594 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)L268.CB) [> 2.9557 = 4.9261 < 6.4040] w=0.0594 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)A265.CB) [> 4.5724 = 7.6207 < 9.9069] w=0.0593 to align # Constraint # added constraint: constraint((T0294)P174.CB, (T0294)Q196.CB) [> 4.6272 = 7.7120 < 10.0256] w=0.0593 to align # Constraint # added constraint: constraint((T0294)E30.CB, (T0294)H53.CB) [> 4.0235 = 6.7058 < 8.7175] w=0.0592 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)S244.CB) [> 4.2275 = 7.0458 < 9.1595] w=0.0580 to align # Constraint # added constraint: constraint((T0294)Q251.CB, (T0294)A266.CB) [> 2.5704 = 4.2840 < 5.5691] w=0.0580 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)A265.CB) [> 4.5980 = 7.6633 < 9.9623] w=0.0580 to align # Constraint # added constraint: constraint((T0294)W145.CB, (T0294)D210.CB) [> 4.1065 = 6.8442 < 8.8975] w=0.0580 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)G316.CA) [> 4.3151 = 7.1919 < 9.3494] w=0.0569 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)H293.CB) [> 4.1526 = 6.9210 < 8.9973] w=0.0567 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)W138.CB) [> 3.0743 = 5.1238 < 6.6610] w=0.0553 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)I241.CB) [> 4.6072 = 7.6786 < 9.9822] w=0.0551 to align # Constraint # added constraint: constraint((T0294)A129.CB, (T0294)K142.CB) [> 4.2320 = 7.0533 < 9.1692] w=0.0549 to align # Constraint # added constraint: constraint((T0294)A264.CB, (T0294)V289.CB) [> 4.2369 = 7.0615 < 9.1800] w=0.0545 to align # Constraint # added constraint: constraint((T0294)T271.CB, (T0294)T304.CB) [> 3.5590 = 5.9316 < 7.7111] w=0.0542 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)S82.CB) [> 3.7047 = 6.1745 < 8.0268] w=0.0541 to align # Constraint # added constraint: constraint((T0294)A27.CB, (T0294)M322.CB) [> 3.8657 = 6.4428 < 8.3757] w=0.0541 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)P273.CB) [> 3.3095 = 5.5159 < 7.1706] w=0.0539 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)P273.CB) [> 3.4694 = 5.7823 < 7.5170] w=0.0539 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)L258.CB) [> 3.4983 = 5.8306 < 7.5798] w=0.0537 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)N242.CB) [> 3.7273 = 6.2121 < 8.0757] w=0.0536 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)I243.CB) [> 4.0204 = 6.7006 < 8.7108] w=0.0531 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)I243.CB) [> 4.5773 = 7.6289 < 9.9176] w=0.0531 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)Q186.CB) [> 4.6039 = 7.6732 < 9.9752] w=0.0528 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)M81.CB) [> 3.4207 = 5.7012 < 7.4115] w=0.0522 to align # Constraint # added constraint: constraint((T0294)E274.CB, (T0294)I290.CB) [> 4.1766 = 6.9610 < 9.0492] w=0.0515 to align # Constraint # added constraint: constraint((T0294)P16.CB, (T0294)H299.CB) [> 4.2539 = 7.0899 < 9.2168] w=0.0511 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)L56.CB) [> 4.1597 = 6.9329 < 9.0128] w=0.0511 to align # Constraint # added constraint: constraint((T0294)V100.CB, (T0294)L328.CB) [> 3.7731 = 6.2886 < 8.1751] w=0.0511 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)S217.CB) [> 4.3007 = 7.1679 < 9.3182] w=0.0511 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)M322.CB) [> 4.5648 = 7.6079 < 9.8903] w=0.0511 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)N287.CB) [> 4.4357 = 7.3929 < 9.6107] w=0.0511 to align # Constraint # added constraint: constraint((T0294)E132.CB, (T0294)K286.CB) [> 4.0839 = 6.8065 < 8.8485] w=0.0511 to align # Constraint # added constraint: constraint((T0294)I130.CB, (T0294)K286.CB) [> 3.6216 = 6.0359 < 7.8467] w=0.0511 to align # Constraint # added constraint: constraint((T0294)S82.CB, (T0294)A297.CB) [> 4.4435 = 7.4059 < 9.6276] w=0.0511 to align # Constraint # added constraint: constraint((T0294)T108.CB, (T0294)R300.CB) [> 2.7483 = 4.5806 < 5.9548] w=0.0511 to align # Constraint # added constraint: constraint((T0294)R13.CB, (T0294)S79.CB) [> 3.9314 = 6.5523 < 8.5180] w=0.0511 to align # Constraint # added constraint: constraint((T0294)V4.CB, (T0294)A27.CB) [> 2.2448 = 3.7413 < 4.8637] w=0.0511 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)G267.CA) [> 4.0283 = 6.7138 < 8.7280] w=0.0511 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)P277.CB) [> 4.2234 = 7.0390 < 9.1507] w=0.0511 to align # Constraint # added constraint: constraint((T0294)L172.CB, (T0294)A197.CB) [> 4.7336 = 7.8893 < 10.2561] w=0.0511 to align # Constraint # added constraint: constraint((T0294)P277.CB, (T0294)I290.CB) [> 3.2558 = 5.4264 < 7.0543] w=0.0510 to align # Constraint # added constraint: constraint((T0294)A42.CB, (T0294)G54.CA) [> 3.7536 = 6.2561 < 8.1329] w=0.0506 to align # Constraint # added constraint: constraint((T0294)L23.CB, (T0294)L56.CB) [> 4.6212 = 7.7020 < 10.0126] w=0.0506 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)S244.CB) [> 4.4144 = 7.3573 < 9.5645] w=0.0506 to align # Constraint # added constraint: constraint((T0294)P143.CB, (T0294)T237.CB) [> 3.6390 = 6.0649 < 7.8844] w=0.0504 to align # Constraint # added constraint: constraint((T0294)W145.CB, (T0294)S154.CB) [> 2.5170 = 4.1950 < 5.4535] w=0.0504 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)F231.CB) [> 4.2655 = 7.1092 < 9.2420] w=0.0503 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)V270.CB) [> 3.6974 = 6.1623 < 8.0110] w=0.0494 to align # Constraint # added constraint: constraint((T0294)E223.CB, (T0294)G246.CA) [> 4.0024 = 6.6706 < 8.6718] w=0.0492 to align # Constraint # added constraint: constraint((T0294)A22.CB, (T0294)M81.CB) [> 4.1702 = 6.9503 < 9.0354] w=0.0492 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)E30.CB) [> 3.1160 = 5.1934 < 6.7514] w=0.0484 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)F230.CB) [> 4.1569 = 6.9282 < 9.0066] w=0.0482 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)V289.CB) [> 3.2253 = 5.3755 < 6.9881] w=0.0482 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)S296.CB) [> 4.4300 = 7.3834 < 9.5984] w=0.0482 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)A297.CB) [> 3.8587 = 6.4312 < 8.3606] w=0.0482 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)H293.CB) [> 2.8815 = 4.8026 < 6.2433] w=0.0482 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)S296.CB) [> 3.9438 = 6.5730 < 8.5449] w=0.0482 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)A297.CB) [> 4.1382 = 6.8970 < 8.9661] w=0.0482 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)A297.CB) [> 2.9857 = 4.9761 < 6.4689] w=0.0482 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)V289.CB) [> 4.0780 = 6.7966 < 8.8356] w=0.0459 to align # Constraint # added constraint: constraint((T0294)W138.CB, (T0294)V239.CB) [> 2.9691 = 4.9485 < 6.4331] w=0.0457 to align # Constraint # added constraint: constraint((T0294)W138.CB, (T0294)F211.CB) [> 4.3503 = 7.2506 < 9.4257] w=0.0457 to align # Constraint # added constraint: constraint((T0294)K94.CB, (T0294)V106.CB) [> 4.2503 = 7.0839 < 9.2091] w=0.0453 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)F240.CB) [> 3.0591 = 5.0986 < 6.6282] w=0.0451 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)S244.CB) [> 3.0816 = 5.1361 < 6.6769] w=0.0451 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)N242.CB) [> 3.7002 = 6.1669 < 8.0170] w=0.0451 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)A169.CB) [> 4.7255 = 7.8759 < 10.2386] w=0.0440 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)A266.CB) [> 4.4912 = 7.4853 < 9.7309] w=0.0440 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)F231.CB) [> 4.1687 = 6.9478 < 9.0322] w=0.0439 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)V239.CB) [> 3.5482 = 5.9136 < 7.6877] w=0.0433 to align # Constraint # added constraint: constraint((T0294)L90.CB, (T0294)L328.CB) [> 3.6579 = 6.0965 < 7.9255] w=0.0426 to align # Constraint # added constraint: constraint((T0294)G97.CA, (T0294)L328.CB) [> 4.6170 = 7.6950 < 10.0035] w=0.0426 to align # Constraint # added constraint: constraint((T0294)R99.CB, (T0294)L328.CB) [> 3.4680 = 5.7799 < 7.5139] w=0.0426 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)E30.CB) [> 4.2631 = 7.1051 < 9.2366] w=0.0426 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)I98.CB) [> 4.5863 = 7.6439 < 9.9371] w=0.0426 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)V270.CB) [> 4.4765 = 7.4609 < 9.6991] w=0.0426 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)T278.CB) [> 4.3878 = 7.3130 < 9.5069] w=0.0426 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)N279.CB) [> 3.7815 = 6.3025 < 8.1933] w=0.0426 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)T298.CB) [> 3.9792 = 6.6319 < 8.6215] w=0.0426 to align # Constraint # added constraint: constraint((T0294)G295.CA, (T0294)M305.CB) [> 3.4101 = 5.6835 < 7.3885] w=0.0425 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)D269.CB) [> 4.5755 = 7.6258 < 9.9136] w=0.0421 to align # Constraint # added constraint: constraint((T0294)G246.CA, (T0294)P275.CB) [> 4.1429 = 6.9048 < 8.9762] w=0.0421 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)N242.CB) [> 3.4113 = 5.6855 < 7.3912] w=0.0421 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)L23.CB) [> 3.4644 = 5.7740 < 7.5062] w=0.0413 to align # Constraint # added constraint: constraint((T0294)L6.CB, (T0294)H53.CB) [> 3.5509 = 5.9181 < 7.6935] w=0.0412 to align # Constraint # added constraint: constraint((T0294)R5.CB, (T0294)H53.CB) [> 3.5238 = 5.8729 < 7.6348] w=0.0412 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)V270.CB) [> 3.2154 = 5.3590 < 6.9667] w=0.0411 to align # Constraint # added constraint: constraint((T0294)G19.CA, (T0294)M81.CB) [> 4.1602 = 6.9336 < 9.0137] w=0.0406 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)N242.CB) [> 3.2920 = 5.4868 < 7.1328] w=0.0401 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)V289.CB) [> 4.5898 = 7.6496 < 9.9445] w=0.0393 to align # Constraint # added constraint: constraint((T0294)I130.CB, (T0294)W145.CB) [> 4.0043 = 6.6738 < 8.6759] w=0.0379 to align # Constraint # added constraint: constraint((T0294)R185.CB, (T0294)S201.CB) [> 4.5538 = 7.5896 < 9.8665] w=0.0377 to align # Constraint # added constraint: constraint((T0294)L276.CB, (T0294)L291.CB) [> 4.1264 = 6.8774 < 8.9406] w=0.0374 to align # Constraint # added constraint: constraint((T0294)A26.CB, (T0294)P323.CB) [> 3.7595 = 6.2658 < 8.1456] w=0.0371 to align # Constraint # added constraint: constraint((T0294)L23.CB, (T0294)M322.CB) [> 2.1373 = 3.5622 < 4.6308] w=0.0371 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)T271.CB) [> 4.2342 = 7.0570 < 9.1741] w=0.0369 to align # Constraint # added constraint: constraint((T0294)D91.CB, (T0294)S217.CB) [> 4.2758 = 7.1264 < 9.2643] w=0.0341 to align # Constraint # added constraint: constraint((T0294)L146.CB, (T0294)I241.CB) [> 4.6925 = 7.8209 < 10.1672] w=0.0341 to align # Constraint # added constraint: constraint((T0294)A129.CB, (T0294)V289.CB) [> 3.8477 = 6.4129 < 8.3368] w=0.0341 to align # Constraint # added constraint: constraint((T0294)A129.CB, (T0294)P143.CB) [> 2.4755 = 4.1259 < 5.3637] w=0.0341 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)L283.CB) [> 4.2486 = 7.0809 < 9.2052] w=0.0341 to align # Constraint # added constraint: constraint((T0294)S117.CB, (T0294)I294.CB) [> 3.4299 = 5.7165 < 7.4314] w=0.0341 to align # Constraint # added constraint: constraint((T0294)S117.CB, (T0294)H293.CB) [> 4.1826 = 6.9710 < 9.0623] w=0.0341 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)T284.CB) [> 4.2495 = 7.0825 < 9.2073] w=0.0341 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)L283.CB) [> 3.2692 = 5.4486 < 7.0832] w=0.0341 to align # Constraint # added constraint: constraint((T0294)C147.CB, (T0294)L282.CB) [> 4.5306 = 7.5510 < 9.8163] w=0.0341 to align # Constraint # added constraint: constraint((T0294)S272.CB, (T0294)K286.CB) [> 4.7193 = 7.8656 < 10.2252] w=0.0341 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)I294.CB) [> 4.1114 = 6.8524 < 8.9081] w=0.0340 to align # Constraint # added constraint: constraint((T0294)I294.CB, (T0294)M305.CB) [> 2.8370 = 4.7284 < 6.1469] w=0.0340 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)G162.CA) [> 2.6352 = 4.3920 < 5.7095] w=0.0338 to align # Constraint # added constraint: constraint((T0294)G84.CA, (T0294)R163.CB) [> 3.9880 = 6.6466 < 8.6406] w=0.0338 to align # Constraint # added constraint: constraint((T0294)L144.CB, (T0294)S154.CB) [> 4.0740 = 6.7900 < 8.8270] w=0.0336 to align # Constraint # added constraint: constraint((T0294)W145.CB, (T0294)V156.CB) [> 4.1874 = 6.9790 < 9.0727] w=0.0336 to align # Constraint # added constraint: constraint((T0294)W145.CB, (T0294)F211.CB) [> 4.3186 = 7.1976 < 9.3569] w=0.0336 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)V270.CB) [> 4.6391 = 7.7318 < 10.0513] w=0.0336 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)V270.CB) [> 4.2914 = 7.1523 < 9.2980] w=0.0336 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)R245.CB) [> 3.7719 = 6.2864 < 8.1723] w=0.0336 to align # Constraint # added constraint: constraint((T0294)G148.CA, (T0294)T237.CB) [> 4.2954 = 7.1590 < 9.3067] w=0.0334 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)G184.CA) [> 4.7161 = 7.8601 < 10.2181] w=0.0332 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)R99.CB) [> 4.5179 = 7.5299 < 9.7889] w=0.0327 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)R99.CB) [> 3.2837 = 5.4728 < 7.1147] w=0.0327 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)I98.CB) [> 2.7399 = 4.5665 < 5.9364] w=0.0327 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)V100.CB) [> 4.6259 = 7.7099 < 10.0229] w=0.0327 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)V100.CB) [> 4.0439 = 6.7398 < 8.7618] w=0.0327 to align # Constraint # added constraint: constraint((T0294)P174.CB, (T0294)T304.CB) [> 4.2789 = 7.1316 < 9.2710] w=0.0325 to align # Constraint # added constraint: constraint((T0294)A264.CB, (T0294)P292.CB) [> 3.9905 = 6.6508 < 8.6460] w=0.0317 to align # Constraint # added constraint: constraint((T0294)G136.CA, (T0294)V289.CB) [> 3.7076 = 6.1794 < 8.0332] w=0.0313 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)I241.CB) [> 4.5818 = 7.6363 < 9.9271] w=0.0311 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)A297.CB) [> 3.8944 = 6.4907 < 8.4379] w=0.0311 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)M81.CB) [> 3.7666 = 6.2776 < 8.1609] w=0.0294 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)T80.CB) [> 4.3313 = 7.2189 < 9.3845] w=0.0294 to align # Constraint # added constraint: constraint((T0294)A129.CB, (T0294)W141.CB) [> 3.1288 = 5.2146 < 6.7790] w=0.0294 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)I243.CB) [> 4.3665 = 7.2775 < 9.4607] w=0.0281 to align # Constraint # added constraint: constraint((T0294)G148.CA, (T0294)V239.CB) [> 4.2212 = 7.0353 < 9.1458] w=0.0273 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)A264.CB) [> 4.2748 = 7.1247 < 9.2621] w=0.0270 to align # Constraint # added constraint: constraint((T0294)N242.CB, (T0294)A264.CB) [> 3.8496 = 6.4161 < 8.3409] w=0.0270 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)A265.CB) [> 2.9181 = 4.8635 < 6.3225] w=0.0260 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)A265.CB) [> 4.4478 = 7.4130 < 9.6369] w=0.0260 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)G295.CA) [> 3.0695 = 5.1159 < 6.6507] w=0.0256 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)L254.CB) [> 4.7696 = 7.9493 < 10.3341] w=0.0256 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)A264.CB) [> 4.7525 = 7.9208 < 10.2970] w=0.0256 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)I294.CB) [> 4.4970 = 7.4950 < 9.7435] w=0.0256 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)I294.CB) [> 3.9456 = 6.5761 < 8.5489] w=0.0256 to align # Constraint # added constraint: constraint((T0294)E113.CB, (T0294)G295.CA) [> 4.7268 = 7.8781 < 10.2415] w=0.0256 to align # Constraint # added constraint: constraint((T0294)V133.CB, (T0294)T298.CB) [> 2.8665 = 4.7774 < 6.2106] w=0.0256 to align # Constraint # added constraint: constraint((T0294)V133.CB, (T0294)T301.CB) [> 3.2559 = 5.4265 < 7.0545] w=0.0256 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)P220.CB) [> 3.7354 = 6.2257 < 8.0934] w=0.0256 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)I243.CB) [> 4.1541 = 6.9235 < 9.0006] w=0.0256 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)I294.CB) [> 4.0094 = 6.6824 < 8.6871] w=0.0256 to align # Constraint # added constraint: constraint((T0294)D269.CB, (T0294)T298.CB) [> 3.3533 = 5.5888 < 7.2655] w=0.0256 to align # Constraint # added constraint: constraint((T0294)I85.CB, (T0294)L308.CB) [> 2.7018 = 4.5030 < 5.8539] w=0.0255 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)I85.CB) [> 3.5298 = 5.8831 < 7.6480] w=0.0255 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)G84.CA) [> 4.0915 = 6.8192 < 8.8649] w=0.0255 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)I85.CB) [> 3.3409 = 5.5682 < 7.2387] w=0.0255 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)G84.CA) [> 4.0628 = 6.7714 < 8.8028] w=0.0255 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)I85.CB) [> 3.3463 = 5.5771 < 7.2502] w=0.0255 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)T108.CB) [> 4.7831 = 7.9719 < 10.3634] w=0.0255 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)F231.CB) [> 4.1985 = 6.9975 < 9.0968] w=0.0255 to align # Constraint # added constraint: constraint((T0294)T219.CB, (T0294)D252.CB) [> 4.3963 = 7.3271 < 9.5253] w=0.0255 to align # Constraint # added constraint: constraint((T0294)L126.CB, (T0294)Y149.CB) [> 3.7332 = 6.2221 < 8.0887] w=0.0252 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)L268.CB) [> 4.3642 = 7.2736 < 9.4557] w=0.0251 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)L268.CB) [> 3.9248 = 6.5413 < 8.5036] w=0.0251 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)I241.CB) [> 2.8533 = 4.7555 < 6.1821] w=0.0250 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)N242.CB) [> 3.7555 = 6.2592 < 8.1369] w=0.0250 to align # Constraint # added constraint: constraint((T0294)I158.CB, (T0294)I241.CB) [> 4.4258 = 7.3764 < 9.5893] w=0.0250 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)I241.CB) [> 4.5423 = 7.5706 < 9.8418] w=0.0250 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)I243.CB) [> 4.4971 = 7.4951 < 9.7436] w=0.0250 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)R245.CB) [> 3.1831 = 5.3052 < 6.8967] w=0.0250 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)F240.CB) [> 4.1929 = 6.9883 < 9.0847] w=0.0250 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)N242.CB) [> 4.1293 = 6.8822 < 8.9469] w=0.0250 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)I241.CB) [> 4.3336 = 7.2226 < 9.3894] w=0.0250 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)F240.CB) [> 3.0633 = 5.1055 < 6.6372] w=0.0250 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)V239.CB) [> 4.0844 = 6.8074 < 8.8496] w=0.0250 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)V289.CB) [> 3.5545 = 5.9242 < 7.7014] w=0.0250 to align # Constraint # added constraint: constraint((T0294)V239.CB, (T0294)N287.CB) [> 3.4371 = 5.7285 < 7.4471] w=0.0250 to align # Constraint # added constraint: constraint((T0294)L6.CB, (T0294)G54.CA) [> 4.4670 = 7.4450 < 9.6785] w=0.0249 to align # Constraint # added constraint: constraint((T0294)A265.CB, (T0294)I294.CB) [> 4.0262 = 6.7104 < 8.7235] w=0.0246 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)A264.CB) [> 4.1597 = 6.9329 < 9.0128] w=0.0245 to align # Constraint # added constraint: constraint((T0294)W145.CB, (T0294)T237.CB) [> 4.1184 = 6.8639 < 8.9231] w=0.0244 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)A265.CB) [> 4.3515 = 7.2526 < 9.4283] w=0.0242 to align # Constraint # added constraint: constraint((T0294)V49.CB, (T0294)R96.CB) [> 3.2147 = 5.3578 < 6.9652] w=0.0241 to align # Constraint # added constraint: constraint((T0294)V133.CB, (T0294)I241.CB) [> 4.3737 = 7.2894 < 9.4762] w=0.0240 to align # Constraint # added constraint: constraint((T0294)A42.CB, (T0294)V83.CB) [> 3.6092 = 6.0153 < 7.8199] w=0.0228 to align # Constraint # added constraint: constraint((T0294)L45.CB, (T0294)G84.CA) [> 3.8138 = 6.3564 < 8.2633] w=0.0228 to align # Constraint # added constraint: constraint((T0294)G150.CA, (T0294)V239.CB) [> 4.3246 = 7.2077 < 9.3699] w=0.0227 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)T237.CB) [> 4.6700 = 7.7833 < 10.1183] w=0.0227 to align # Constraint # added constraint: constraint((T0294)Y149.CB, (T0294)V289.CB) [> 3.8676 = 6.4460 < 8.3798] w=0.0226 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)P104.CB) [> 2.8943 = 4.8239 < 6.2710] w=0.0226 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)V133.CB) [> 3.6720 = 6.1199 < 7.9559] w=0.0208 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)A265.CB) [> 4.2880 = 7.1467 < 9.2907] w=0.0184 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)A266.CB) [> 3.9645 = 6.6074 < 8.5897] w=0.0184 to align # Constraint # added constraint: constraint((T0294)V133.CB, (T0294)V289.CB) [> 4.1313 = 6.8856 < 8.9512] w=0.0181 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)A27.CB) [> 2.4367 = 4.0611 < 5.2795] w=0.0170 to align # Constraint # added constraint: constraint((T0294)V133.CB, (T0294)L144.CB) [> 3.3461 = 5.5768 < 7.2498] w=0.0170 to align # Constraint # added constraint: constraint((T0294)A115.CB, (T0294)P292.CB) [> 2.9703 = 4.9504 < 6.4356] w=0.0170 to align # Constraint # added constraint: constraint((T0294)S117.CB, (T0294)L151.CB) [> 3.8242 = 6.3737 < 8.2858] w=0.0170 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)L276.CB) [> 3.8814 = 6.4690 < 8.4098] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G19.CA, (T0294)L56.CB) [> 4.7311 = 7.8852 < 10.2507] w=0.0170 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)R302.CB) [> 4.2193 = 7.0321 < 9.1418] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G162.CA, (T0294)R185.CB) [> 4.7234 = 7.8723 < 10.2340] w=0.0170 to align # Constraint # added constraint: constraint((T0294)V83.CB, (T0294)R245.CB) [> 4.6755 = 7.7926 < 10.1303] w=0.0170 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)P292.CB) [> 4.6409 = 7.7347 < 10.0552] w=0.0170 to align # Constraint # added constraint: constraint((T0294)L254.CB, (T0294)G295.CA) [> 2.5608 = 4.2679 < 5.5483] w=0.0170 to align # Constraint # added constraint: constraint((T0294)A266.CB, (T0294)I294.CB) [> 4.4872 = 7.4787 < 9.7223] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)G295.CA) [> 3.7002 = 6.1670 < 8.0172] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)T298.CB) [> 3.8809 = 6.4681 < 8.4085] w=0.0170 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)L285.CB) [> 3.9081 = 6.5135 < 8.4676] w=0.0170 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)V83.CB) [> 4.0412 = 6.7354 < 8.7560] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)V83.CB) [> 2.8650 = 4.7750 < 6.2075] w=0.0170 to align # Constraint # added constraint: constraint((T0294)G54.CA, (T0294)G84.CA) [> 3.6483 = 6.0805 < 7.9046] w=0.0170 to align # Constraint # added constraint: constraint((T0294)L55.CB, (T0294)V83.CB) [> 3.2548 = 5.4247 < 7.0522] w=0.0170 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)D86.CB) [> 2.4943 = 4.1572 < 5.4044] w=0.0170 to align # Constraint # added constraint: constraint((T0294)T103.CB, (T0294)P174.CB) [> 3.6860 = 6.1434 < 7.9864] w=0.0170 to align # Constraint # added constraint: constraint((T0294)P281.CB, (T0294)G295.CA) [> 3.9410 = 6.5683 < 8.5389] w=0.0170 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)V213.CB) [> 3.8484 = 6.4141 < 8.3383] w=0.0170 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)H299.CB) [> 4.4028 = 7.3380 < 9.5394] w=0.0170 to align # Constraint # added constraint: constraint((T0294)I243.CB, (T0294)P292.CB) [> 4.1736 = 6.9559 < 9.0427] w=0.0170 to align # Constraint # added constraint: constraint((T0294)A27.CB, (T0294)H299.CB) [> 2.6615 = 4.4358 < 5.7666] w=0.0170 to align # Constraint # added constraint: constraint((T0294)R99.CB, (T0294)T298.CB) [> 4.4684 = 7.4473 < 9.6815] w=0.0170 to align # Constraint # added constraint: constraint((T0294)A169.CB, (T0294)T183.CB) [> 3.8040 = 6.3401 < 8.2421] w=0.0170 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)I212.CB) [> 4.6708 = 7.7846 < 10.1200] w=0.0168 to align # Constraint # added constraint: constraint((T0294)A27.CB, (T0294)H53.CB) [> 4.4860 = 7.4767 < 9.7197] w=0.0168 to align # Constraint # added constraint: constraint((T0294)L144.CB, (T0294)T237.CB) [> 4.1133 = 6.8555 < 8.9121] w=0.0168 to align # Constraint # added constraint: constraint((T0294)P143.CB, (T0294)E236.CB) [> 4.1478 = 6.9130 < 8.9869] w=0.0168 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)V270.CB) [> 3.0765 = 5.1274 < 6.6657] w=0.0168 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)V213.CB) [> 4.0011 = 6.6685 < 8.6691] w=0.0167 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)F231.CB) [> 3.7709 = 6.2849 < 8.1703] w=0.0167 to align # Constraint # added constraint: constraint((T0294)R185.CB, (T0294)V214.CB) [> 4.3025 = 7.1708 < 9.3221] w=0.0167 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)V213.CB) [> 3.6665 = 6.1108 < 7.9440] w=0.0167 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)R99.CB) [> 4.7619 = 7.9365 < 10.3174] w=0.0166 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)L268.CB) [> 3.5703 = 5.9506 < 7.7357] w=0.0166 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)V239.CB) [> 4.4700 = 7.4501 < 9.6851] w=0.0161 to align # Constraint # added constraint: constraint((T0294)G157.CA, (T0294)V214.CB) [> 3.7160 = 6.1933 < 8.0512] w=0.0161 to align # Constraint # added constraint: constraint((T0294)V156.CB, (T0294)V214.CB) [> 3.8917 = 6.4862 < 8.4320] w=0.0161 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)I294.CB) [> 4.5321 = 7.5535 < 9.8196] w=0.0161 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)V239.CB) [> 4.2825 = 7.1376 < 9.2788] w=0.0151 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)N242.CB) [> 4.1450 = 6.9084 < 8.9809] w=0.0151 to align # Constraint # added constraint: constraint((T0294)T12.CB, (T0294)S82.CB) [> 3.5599 = 5.9331 < 7.7131] w=0.0144 to align # Constraint # added constraint: constraint((T0294)G148.CA, (T0294)A264.CB) [> 4.7133 = 7.8555 < 10.2121] w=0.0143 to align # Constraint # added constraint: constraint((T0294)Q153.CB, (T0294)F211.CB) [> 4.1254 = 6.8756 < 8.9383] w=0.0143 to align # Constraint # added constraint: constraint((T0294)R245.CB, (T0294)A266.CB) [> 3.5551 = 5.9251 < 7.7027] w=0.0123 to align # Constraint # added constraint: constraint((T0294)H53.CB, (T0294)I78.CB) [> 4.4531 = 7.4218 < 9.6483] w=0.0085 to align # Constraint # added constraint: constraint((T0294)C57.CB, (T0294)A115.CB) [> 3.7056 = 6.1761 < 8.0289] w=0.0085 to align # Constraint # added constraint: constraint((T0294)D86.CB, (T0294)P292.CB) [> 4.0859 = 6.8098 < 8.8527] w=0.0085 to align # Constraint # added constraint: constraint((T0294)S79.CB, (T0294)R99.CB) [> 4.2275 = 7.0458 < 9.1595] w=0.0085 to align # Constraint # added constraint: constraint((T0294)T80.CB, (T0294)A115.CB) [> 3.4133 = 5.6888 < 7.3955] w=0.0085 to align # Constraint # added constraint: constraint((T0294)P104.CB, (T0294)L328.CB) [> 4.2312 = 7.0519 < 9.1675] w=0.0085 to align # Constraint # added constraint: constraint((T0294)I130.CB, (T0294)L144.CB) [> 4.0247 = 6.7078 < 8.7202] w=0.0085 to align # Constraint # added constraint: constraint((T0294)I241.CB, (T0294)P292.CB) [> 4.5219 = 7.5365 < 9.7975] w=0.0085 to align # Constraint # added constraint: constraint((T0294)K134.CB, (T0294)L144.CB) [> 3.6239 = 6.0398 < 7.8517] w=0.0085 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)P273.CB) [> 4.2696 = 7.1160 < 9.2508] w=0.0085 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)S82.CB) [> 4.3844 = 7.3074 < 9.4996] w=0.0085 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)A264.CB) [> 3.5601 = 5.9336 < 7.7136] w=0.0085 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)A264.CB) [> 2.8929 = 4.8215 < 6.2680] w=0.0085 to align # Constraint # added constraint: constraint((T0294)L56.CB, (T0294)V83.CB) [> 3.3367 = 5.5612 < 7.2296] w=0.0085 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)F240.CB) [> 4.1658 = 6.9429 < 9.0258] w=0.0085 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)V83.CB) [> 3.5640 = 5.9399 < 7.7219] w=0.0085 to align # Constraint # added constraint: constraint((T0294)V11.CB, (T0294)S82.CB) [> 2.6450 = 4.4083 < 5.7308] w=0.0085 to align # Constraint # added constraint: constraint((T0294)F10.CB, (T0294)V83.CB) [> 4.8000 = 7.9999 < 10.3999] w=0.0085 to align # Constraint # added constraint: constraint((T0294)V9.CB, (T0294)M81.CB) [> 3.3606 = 5.6010 < 7.2813] w=0.0085 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)S260.CB) [> 3.9955 = 6.6592 < 8.6570] w=0.0085 to align # Constraint # added constraint: constraint((T0294)T122.CB, (T0294)V156.CB) [> 4.4963 = 7.4939 < 9.7421] w=0.0085 to align # Constraint # added constraint: constraint((T0294)G150.CA, (T0294)F211.CB) [> 4.5437 = 7.5728 < 9.8446] w=0.0085 to align # Constraint # added constraint: constraint((T0294)G148.CA, (T0294)F240.CB) [> 4.2647 = 7.1078 < 9.2401] w=0.0083 to align # Constraint # added constraint: constraint((T0294)R179.CB, (T0294)F211.CB) [> 4.3447 = 7.2412 < 9.4136] w=0.0083 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)F211.CB) [> 4.1058 = 6.8430 < 8.8959] w=0.0083 to align # Constraint # added constraint: constraint((T0294)L181.CB, (T0294)I212.CB) [> 2.9084 = 4.8473 < 6.3015] w=0.0083 to align # Constraint # added constraint: constraint((T0294)Y182.CB, (T0294)V214.CB) [> 4.6771 = 7.7952 < 10.1337] w=0.0083 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)R179.CB) [> 4.6530 = 7.7550 < 10.0815] w=0.0083 to align # Constraint # added constraint: constraint((T0294)G160.CA, (T0294)R179.CB) [> 4.0298 = 6.7163 < 8.7311] w=0.0083 to align # Constraint # added constraint: constraint((T0294)L161.CB, (T0294)R179.CB) [> 3.5340 = 5.8900 < 7.6569] w=0.0083 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)A265.CB) [> 3.9740 = 6.6234 < 8.6104] w=0.0083 to align # Constraint # added constraint: constraint((T0294)F240.CB, (T0294)D269.CB) [> 3.1060 = 5.1767 < 6.7297] w=0.0083 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)L268.CB) [> 4.5819 = 7.6365 < 9.9274] w=0.0083 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)G267.CA) [> 3.5290 = 5.8817 < 7.6462] w=0.0083 to align # Constraint # added constraint: constraint((T0294)T237.CB, (T0294)A266.CB) [> 4.6015 = 7.6692 < 9.9700] w=0.0083 to align # Constraint # added constraint: constraint((T0294)Q232.CB, (T0294)A265.CB) [> 3.6577 = 6.0961 < 7.9250] w=0.0083 to align # Constraint # added constraint: constraint((T0294)F231.CB, (T0294)A266.CB) [> 3.5392 = 5.8986 < 7.6682] w=0.0083 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)V239.CB) [> 3.9891 = 6.6485 < 8.6430] w=0.0076 to align # Constraint # added constraint: constraint((T0294)V213.CB, (T0294)R245.CB) [> 4.2364 = 7.0607 < 9.1789] w=0.0076 to align # Constraint # added constraint: constraint((T0294)I212.CB, (T0294)S244.CB) [> 4.3717 = 7.2861 < 9.4720] w=0.0076 to align # Constraint # added constraint: constraint((T0294)F211.CB, (T0294)I243.CB) [> 3.9411 = 6.5684 < 8.5389] w=0.0076 to align # Constraint # added constraint: constraint((T0294)I159.CB, (T0294)D269.CB) [> 4.1954 = 6.9922 < 9.0899] w=0.0075 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)A265.CB) [> 4.4616 = 7.4359 < 9.6667] w=0.0075 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)L268.CB) [> 4.4711 = 7.4518 < 9.6874] w=0.0075 to align # Constraint # added constraint: constraint((T0294)V214.CB, (T0294)D269.CB) [> 2.1096 = 3.5160 < 4.5708] w=0.0075 to align # Constraint # added constraint: constraint((T0294)A215.CB, (T0294)D269.CB) [> 4.1296 = 6.8827 < 8.9475] w=0.0075 to align # Constraint # added constraint: constraint((T0294)S244.CB, (T0294)L268.CB) [> 3.9961 = 6.6602 < 8.6583] w=0.0075 to align # Constraint # added constraint: constraint((T0294)A265.CB, (T0294)H293.CB) [> 2.3066 = 3.8444 < 4.9977] w=0.0075 to align # Constraint # added constraint: constraint((T0294)G267.CA, (T0294)H293.CB) [> 4.4281 = 7.3802 < 9.5942] w=0.0075 to align # Constraint # added constraint: constraint((T0294)L268.CB, (T0294)H293.CB) [> 2.3159 = 3.8599 < 5.0179] w=0.0075 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0294/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0294/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 325 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 325 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 431, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 440, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 757, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 1106, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 39, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 420, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 429, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 838, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 895, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 1076, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 1097, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 431, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 440, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 757, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 1106, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 Skipped atom 586, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 588, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 590, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz Skipped atom 592, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL4.pdb.gz # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 586, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 588, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 590, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 592, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0294)A52.O and (T0294)H53.N only 0.000 apart, marking (T0294)H53.N as missing WARNING: atoms too close: (T0294)G72.O and (T0294)A73.N only 0.000 apart, marking (T0294)A73.N as missing # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0294 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.4171 model score -0.4574 model score -0.4574 model score -0.4593 model score -0.4431 model score -0.4524 model score -0.4478 model score -0.4051 model score -0.3890 model score -0.4415 model score -0.3930 model score -0.3864 model score -0.4541 model score -0.4255 model score -0.3640 model score -0.4946 model score 1.0221 model score 1.5434 model score 1.6291 model score 2.0106 model score 1.5928 model score 1.7430 model score 1.7861 model score 1.6524 model score 1.6425 model score -0.3676 model score -0.3968 model score -0.4000 model score -0.3777 model score -0.2753 model score -0.2841 model score -0.4414 model score -0.4400 model score -0.4512 model score -0.4222 model score -0.4188 model score -0.3783 model score -0.3309 model score -0.4325 model score -0.4546 model score -0.4025 model score 1.2727 model score 1.2748 model score 1.2740 model score 1.2739 model score 1.2747 model score -0.3798 model score -0.3664 model score -0.4105 model score -0.4134 model score -0.4334 model score -0.4414 model score -0.4400 model score -0.4512 model score -0.4334 model score -0.4222 model score -0.5112 model score 0.7643 model score 1.3721 model score 0.6310 model score 2.0879 model score 1.2743 model score 1.2741 model score 1.2741 model score 1.2736 model score 1.2744 model score 1.2743 model score 1.2741 model score 1.2741 model score 1.2736 model score 1.2744 model score 2.4506 model score -0.3776 model score -0.4075 model score -0.3923 model score 0.9357 model score 1.0119 model score 1.2741 model score 1.2744 model score 1.2744 model score 1.2771 model score 1.2771 model score -0.4456 model score -0.3841 model score -0.4345 model score -0.4496 model score -0.4025 model score -0.4089 model score -0.4187 model score -0.4217 model score -0.4180 model score -0.4145 model score -0.4174 model score -0.3618 model score -0.3618 model score -0.3790 model score -0.3457 model score -0.3451 model score -0.3383 model score -0.3605 model score -0.4136 model score -0.4270 model score -0.4714 model score -0.4465 model score -0.4093 model score -0.3799 model score -0.4086 model score -0.4349 model score -0.3998 model score -0.4187 model score -0.3453 model score -0.3076 model score -0.3173 model score -0.3116 model score -0.2985 model score -0.4208 model score -0.3346 model score -0.3230 model score -0.3234 model score -0.3311 model score -0.3265 model score -0.3715 model score -0.3657 model score -0.2778 model score -0.2753 model score -0.2960 model score -0.4206 model score -0.4310 model score -0.4113 model score -0.3885 model score -0.3977 model score -0.4181 model score -0.4401 model score -0.4401 model score -0.4401 model score -0.4401 model score -0.4401 model score -0.4236 model score -0.4529 model score -0.4432 model score -0.4491 model score -0.4660 model score -0.4235 model score -0.4172 model score -0.4101 model score -0.4165 model score -0.3909 model score -0.4104 model score -0.3849 model score -0.3428 model score -0.3724 model score -0.4360 model score -0.4236 model score -0.4018 model score -0.3873 model score -0.4112 model score -0.4157 model score -0.4120 model score -0.3743 model score -0.4373 model score -0.4665 model score -0.4558 model score -0.3953 model score 0.8969 model score -0.3628 model score -0.3339 model score -0.3992 model score 1.2743 model score 1.2736 model score 1.2744 model score 1.2731 model score 1.2741 model score 1.2745 model score 1.2743 model score 1.2744 model score 1.2749 model score 1.2744 model score -0.4734 model score -0.4688 model score -0.3152 model score -0.5013 model score -0.4586 model score -0.4522 model score -0.4256 model score -0.4362 model score -0.4604 model score -0.4291 model score -0.4446 model score -0.4196 model score -0.4362 model score -0.4577 model score -0.4230 model score -0.4515 model score -0.4239 model score -0.4338 model score -0.4169 model score -0.4545 model score 1.2741 model score 1.2744 model score 1.2744 model score 1.2734 model score 1.2744 model score -0.3744 model score 1.2741 model score 1.2744 model score 1.2744 model score 1.2734 model score 1.2744 model score -0.4655 model score -0.4567 model score -0.4437 model score -0.4167 model score -0.4542 model score -0.4081 model score -0.4406 model score 1.2752 model score 1.2741 model score 1.2737 model score 1.2738 model score 1.2730 model score 1.2714 model score 1.2715 model score 1.2716 model score 1.2713 model score 1.2712 model score -0.0085 model score 0.0339 model score 0.1073 model score 0.0217 model score 0.0606 model score 2.1634 model score 0.0845 model score -0.0766 model score -0.0741 model score -0.0626 model score -0.0933 model score -0.2484 model score -0.2476 model score -0.2628 model score -0.3937 model score -0.2975 model score -0.4479 model score -0.4245 model score -0.4166 model score -0.4281 model score -0.4280 model score -0.2505 model score -0.4028 USE_META, weight: 0.9714 cost: -0.4171 min: -0.5112 max: 2.4506 USE_META, weight: 0.9837 cost: -0.4574 min: -0.5112 max: 2.4506 USE_META, weight: 0.9837 cost: -0.4574 min: -0.5112 max: 2.4506 USE_META, weight: 0.9842 cost: -0.4593 min: -0.5112 max: 2.4506 USE_META, weight: 0.9793 cost: -0.4431 min: -0.5112 max: 2.4506 USE_META, weight: 0.9821 cost: -0.4524 min: -0.5112 max: 2.4506 USE_META, weight: 0.9807 cost: -0.4478 min: -0.5112 max: 2.4506 USE_META, weight: 0.9678 cost: -0.4051 min: -0.5112 max: 2.4506 USE_META, weight: 0.9629 cost: -0.3890 min: -0.5112 max: 2.4506 USE_META, weight: 0.9788 cost: -0.4415 min: -0.5112 max: 2.4506 USE_META, weight: 0.9641 cost: -0.3930 min: -0.5112 max: 2.4506 USE_META, weight: 0.9621 cost: -0.3864 min: -0.5112 max: 2.4506 USE_META, weight: 0.9827 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min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9959 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9959 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.6854 eval: 0.0003 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.6854 eval: 0.0003 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.6854 eval: 0.0003 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8864 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8864 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8864 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.5260 eval: 0.0004 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.5260 eval: 0.0004 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.5260 eval: 0.0004 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8855 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8855 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.8855 eval: 0.0001 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9979 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9979 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9979 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9719 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9719 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9719 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9947 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9947 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9947 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9960 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9960 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9960 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.1001 eval: 0.0008 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.1001 eval: 0.0008 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.1001 eval: 0.0008 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9798 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9798 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.9798 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.4467 eval: 0.0005 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.4467 eval: 0.0005 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 0.4467 eval: 0.0005 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0008 Number of contacts in models: 248 Number of contacts in alignments: 126 NUMB_ALIGNS: 126 Adding 12046 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -566.5260, CN propb: -566.5260 weights: 0.3043 constraints: 1405 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1405 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1405 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 10641 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 10641 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 12046 # command: