# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0293/ # command:# Making conformation for sequence T0293 numbered 1 through 250 Created new target T0293 from T0293.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0293/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0293//projects/compbio/experiments/protein-predict/casp7/T0293/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0293//projects/compbio/experiments/protein-predict/casp7/T0293/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0293/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0293/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)L89.CB) [> 3.7868 = 6.3113 < 8.2046] w=1.0000 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)F139.CB) [> 2.7777 = 4.6294 < 6.0183] w=1.0000 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)C140.CB) [> 4.0978 = 6.8296 < 8.8785] w=1.0000 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)M141.CB) [> 4.3080 = 7.1800 < 9.3340] w=1.0000 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)L89.CB) [> 2.9044 = 4.8407 < 6.2929] w=1.0000 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)F139.CB) [> 4.3874 = 7.3123 < 9.5060] w=1.0000 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)C140.CB) [> 2.9770 = 4.9617 < 6.4502] w=1.0000 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)M141.CB) [> 4.2931 = 7.1552 < 9.3018] w=1.0000 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)L89.CB) [> 4.1627 = 6.9378 < 9.0192] w=1.0000 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)A90.CB) [> 2.6589 = 4.4316 < 5.7611] w=1.0000 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)T91.CB) [> 4.1950 = 6.9917 < 9.0892] w=1.0000 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)M141.CB) [> 2.9998 = 4.9997 < 6.4996] w=1.0000 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)E92.CB) [> 3.0397 = 5.0661 < 6.5859] w=1.0000 to align # Constraint # added constraint: constraint((T0293)A90.CB, (T0293)V116.CB) [> 2.9755 = 4.9591 < 6.4468] w=1.0000 to align # Constraint # added constraint: constraint((T0293)A90.CB, (T0293)V117.CB) [> 4.2761 = 7.1268 < 9.2648] w=1.0000 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)V117.CB) [> 2.9938 = 4.9898 < 6.4867] w=1.0000 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)V119.CB) [> 3.1997 = 5.3328 < 6.9326] w=1.0000 to align # Constraint # added constraint: constraint((T0293)E92.CB, (T0293)K118.CB) [> 3.8135 = 6.3558 < 8.2625] w=1.0000 to align # Constraint # added constraint: constraint((T0293)V93.CB, (T0293)K118.CB) [> 4.1703 = 6.9505 < 9.0356] w=1.0000 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)Y137.CB) [> 3.0357 = 5.0594 < 6.5772] w=0.9935 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)D138.CB) [> 3.6334 = 6.0557 < 7.8724] w=0.9935 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)Y137.CB) [> 2.7845 = 4.6408 < 6.0331] w=0.9935 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)A90.CB) [> 2.8639 = 4.7731 < 6.2050] w=0.9871 to align # Constraint # added constraint: constraint((T0293)A90.CB, (T0293)K115.CB) [> 4.2637 = 7.1061 < 9.2380] w=0.9871 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)K115.CB) [> 3.0547 = 5.0911 < 6.6184] w=0.9871 to align # Constraint # added constraint: constraint((T0293)V93.CB, (T0293)P120.CB) [> 3.1626 = 5.2709 < 6.8522] w=0.9871 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)F88.CB) [> 3.8220 = 6.3700 < 8.2810] w=0.9807 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)F88.CB) [> 3.2186 = 5.3643 < 6.9736] w=0.9807 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)V117.CB) [> 4.0012 = 6.6686 < 8.6692] w=0.9806 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)T91.CB) [> 4.2570 = 7.0950 < 9.2234] w=0.9806 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)F88.CB) [> 3.1293 = 5.2155 < 6.7801] w=0.9742 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)Y76.CB) [> 2.8047 = 4.6745 < 6.0768] w=0.9742 to align # Constraint # added constraint: constraint((T0293)I75.CB, (T0293)M141.CB) [> 3.4906 = 5.8177 < 7.5630] w=0.9742 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)D138.CB) [> 3.1398 = 5.2330 < 6.8029] w=0.9742 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)Y137.CB) [> 3.0362 = 5.0603 < 6.5784] w=0.9742 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)K115.CB) [> 4.3162 = 7.1937 < 9.3518] w=0.9678 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)D138.CB) [> 2.5756 = 4.2926 < 5.5804] w=0.9677 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)Y87.CB) [> 2.9513 = 4.9189 < 6.3945] w=0.9613 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)Y87.CB) [> 3.9906 = 6.6510 < 8.6463] w=0.9613 to align # Constraint # added constraint: constraint((T0293)V93.CB, (T0293)V119.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.9613 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)A90.CB) [> 3.4593 = 5.7655 < 7.4951] w=0.9548 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)I114.CB) [> 2.7903 = 4.6506 < 6.0458] w=0.9420 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)C142.CB) [> 3.0067 = 5.0112 < 6.5145] w=0.9420 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)T91.CB) [> 3.1093 = 5.1822 < 6.7368] w=0.9420 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)E92.CB) [> 2.9447 = 4.9079 < 6.3802] w=0.9419 to align # Constraint # added constraint: constraint((T0293)D95.CB, (T0293)K118.CB) [> 3.5246 = 5.8743 < 7.6365] w=0.9370 to align # Constraint # added constraint: constraint((T0293)L79.CB, (T0293)F88.CB) [> 3.4067 = 5.6778 < 7.3812] w=0.9313 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)A101.CB) [> 3.6941 = 6.1569 < 8.0039] w=0.9248 to align # Constraint # added constraint: constraint((T0293)F98.CB, (T0293)K118.CB) [> 3.0876 = 5.1459 < 6.6897] w=0.9248 to align # Constraint # added constraint: constraint((T0293)F98.CB, (T0293)V116.CB) [> 3.2986 = 5.4977 < 7.1471] w=0.9248 to align # Constraint # added constraint: constraint((T0293)A90.CB, (T0293)I114.CB) [> 3.7395 = 6.2326 < 8.1023] w=0.9226 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)C140.CB) [> 4.0609 = 6.7682 < 8.7987] w=0.9226 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)A90.CB) [> 2.2067 = 3.6779 < 4.7812] w=0.9226 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)L89.CB) [> 4.4057 = 7.3429 < 9.5457] w=0.9206 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)A101.CB) [> 2.2713 = 3.7854 < 4.9211] w=0.9184 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)I114.CB) [> 3.5763 = 5.9605 < 7.7487] w=0.9097 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)C97.CB) [> 2.6705 = 4.4509 < 5.7861] w=0.9085 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)E92.CB) [> 3.0959 = 5.1598 < 6.7077] w=0.9033 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)T91.CB) [> 3.6020 = 6.0034 < 7.8044] w=0.9033 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)T91.CB) [> 3.7277 = 6.2129 < 8.0768] w=0.9032 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)A101.CB) [> 3.4295 = 5.7158 < 7.4306] w=0.8990 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)N104.CB) [> 3.2367 = 5.3945 < 7.0128] w=0.8861 to align # Constraint # added constraint: constraint((T0293)A101.CB, (T0293)V116.CB) [> 3.2336 = 5.3893 < 7.0061] w=0.8861 to align # Constraint # added constraint: constraint((T0293)E92.CB, (T0293)A101.CB) [> 4.1416 = 6.9027 < 8.9735] w=0.8861 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)F88.CB) [> 4.5641 = 7.6069 < 9.8890] w=0.8839 to align # Constraint # added constraint: constraint((T0293)K102.CB, (T0293)V116.CB) [> 3.3623 = 5.6038 < 7.2850] w=0.8797 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)Y100.CB) [> 3.0681 = 5.1136 < 6.6476] w=0.8797 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)C142.CB) [> 4.0031 = 6.6718 < 8.6733] w=0.8645 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)D94.CB) [> 4.2306 = 7.0510 < 9.1663] w=0.8645 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)W86.CB) [> 4.1170 = 6.8616 < 8.9201] w=0.8581 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)C97.CB) [> 3.7440 = 6.2400 < 8.1121] w=0.8569 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)N104.CB) [> 3.8479 = 6.4132 < 8.3371] w=0.8539 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)L79.CB) [> 4.0792 = 6.7987 < 8.8384] w=0.8516 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)W86.CB) [> 3.4412 = 5.7354 < 7.4560] w=0.8516 to align # Constraint # added constraint: constraint((T0293)L79.CB, (T0293)M141.CB) [> 4.2829 = 7.1382 < 9.2796] w=0.8339 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)I114.CB) [> 4.4971 = 7.4952 < 9.7437] w=0.8323 to align # Constraint # added constraint: constraint((T0293)L62.CB, (T0293)W86.CB) [> 3.6746 = 6.1244 < 7.9617] w=0.8239 to align # Constraint # added constraint: constraint((T0293)V105.CB, (T0293)I114.CB) [> 3.1150 = 5.1917 < 6.7492] w=0.8217 to align # Constraint # added constraint: constraint((T0293)E92.CB, (T0293)V116.CB) [> 4.2193 = 7.0321 < 9.1417] w=0.8080 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)A90.CB) [> 4.3934 = 7.3224 < 9.5191] w=0.8065 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)K118.CB) [> 4.5297 = 7.5495 < 9.8144] w=0.8065 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)V105.CB) [> 3.6518 = 6.0864 < 7.9123] w=0.8023 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)I136.CB) [> 4.2800 = 7.1333 < 9.2733] w=0.8016 to align # Constraint # added constraint: constraint((T0293)I75.CB, (T0293)N143.CB) [> 3.6683 = 6.1138 < 7.9479] w=0.7885 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)V116.CB) [> 4.0557 = 6.7594 < 8.7872] w=0.7871 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)L79.CB) [> 4.1969 = 6.9949 < 9.0933] w=0.7700 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)N104.CB) [> 3.7516 = 6.2526 < 8.1284] w=0.7700 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)M141.CB) [> 4.1730 = 6.9550 < 9.0415] w=0.7507 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)A90.CB) [> 4.5712 = 7.6186 < 9.9042] w=0.7484 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)F139.CB) [> 3.5330 = 5.8883 < 7.6548] w=0.7435 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)Y137.CB) [> 4.3945 = 7.3242 < 9.5215] w=0.7422 to align # Constraint # added constraint: constraint((T0293)G80.CA, (T0293)I114.CB) [> 3.9337 = 6.5562 < 8.5230] w=0.7378 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)C97.CB) [> 4.3281 = 7.2135 < 9.3776] w=0.7294 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)V116.CB) [> 4.5704 = 7.6173 < 9.9025] w=0.7291 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)N108.CB) [> 3.6743 = 6.1238 < 7.9609] w=0.7194 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)V105.CB) [> 3.8582 = 6.4303 < 8.3594] w=0.7136 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)A90.CB) [> 4.4676 = 7.4460 < 9.6797] w=0.7097 to align # Constraint # added constraint: constraint((T0293)V105.CB, (T0293)V116.CB) [> 4.1894 = 6.9823 < 9.0770] w=0.7055 to align # Constraint # added constraint: constraint((T0293)Y87.CB, (T0293)K115.CB) [> 4.3481 = 7.2468 < 9.4208] w=0.6984 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)V93.CB) [> 4.5318 = 7.5531 < 9.8190] w=0.6964 to align # Constraint # added constraint: constraint((T0293)E92.CB, (T0293)V117.CB) [> 4.5776 = 7.6293 < 9.9181] w=0.6945 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)V116.CB) [> 4.1746 = 6.9577 < 9.0449] w=0.6903 to align # Constraint # added constraint: constraint((T0293)E92.CB, (T0293)V119.CB) [> 4.4952 = 7.4919 < 9.7395] w=0.6710 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)Q121.CB) [> 2.9585 = 4.9308 < 6.4101] w=0.6667 to align # Constraint # added constraint: constraint((T0293)G80.CA, (T0293)L110.CB) [> 3.6604 = 6.1006 < 7.9307] w=0.6665 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)Q121.CB) [> 3.4281 = 5.7134 < 7.4275] w=0.6613 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)Y100.CB) [> 4.4094 = 7.3491 < 9.5538] w=0.6565 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)I114.CB) [> 4.1710 = 6.9517 < 9.0372] w=0.6532 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)Y100.CB) [> 4.3519 = 7.2532 < 9.4291] w=0.6500 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)W86.CB) [> 3.9439 = 6.5731 < 8.5451] w=0.6433 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)N143.CB) [> 4.0329 = 6.7216 < 8.7381] w=0.6401 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)Y87.CB) [> 4.1723 = 6.9539 < 9.0401] w=0.6284 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)L110.CB) [> 3.7251 = 6.2085 < 8.0710] w=0.6149 to align # Constraint # added constraint: constraint((T0293)Y87.CB, (T0293)I114.CB) [> 4.4550 = 7.4250 < 9.6524] w=0.6149 to align # Constraint # added constraint: constraint((T0293)L62.CB, (T0293)G85.CA) [> 3.6785 = 6.1308 < 7.9700] w=0.5990 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)V116.CB) [> 4.6538 = 7.7564 < 10.0833] w=0.5936 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)C142.CB) [> 4.2104 = 7.0173 < 9.1225] w=0.5916 to align # Constraint # added constraint: constraint((T0293)D94.CB, (T0293)K118.CB) [> 4.4660 = 7.4434 < 9.6764] w=0.5910 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)F98.CB) [> 4.3856 = 7.3093 < 9.5021] w=0.5765 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)L113.CB) [> 3.9132 = 6.5221 < 8.4787] w=0.5694 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)V105.CB) [> 4.1915 = 6.9858 < 9.0815] w=0.5523 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)I75.CB) [> 3.8058 = 6.3430 < 8.2458] w=0.5501 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)Q121.CB) [> 3.8876 = 6.4793 < 8.4231] w=0.5482 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)C140.CB) [> 4.6439 = 7.7398 < 10.0617] w=0.5396 to align # Constraint # added constraint: constraint((T0293)F98.CB, (T0293)V117.CB) [> 4.4864 = 7.4774 < 9.7206] w=0.5394 to align # Constraint # added constraint: constraint((T0293)Y87.CB, (T0293)L113.CB) [> 3.4068 = 5.6780 < 7.3814] w=0.5383 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)F98.CB) [> 4.3101 = 7.1835 < 9.3386] w=0.5377 to align # Constraint # added constraint: constraint((T0293)S60.CB, (T0293)D138.CB) [> 4.2699 = 7.1165 < 9.2514] w=0.5282 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)S205.CB) [> 4.3076 = 7.1793 < 9.3330] w=0.5253 to align # Constraint # added constraint: constraint((T0293)T61.CB, (T0293)W86.CB) [> 3.9863 = 6.6439 < 8.6370] w=0.5223 to align # Constraint # added constraint: constraint((T0293)M141.CB, (T0293)S205.CB) [> 3.1677 = 5.2796 < 6.8634] w=0.5188 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)L78.CB) [> 3.5695 = 5.9492 < 7.7339] w=0.5163 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)Y204.CB) [> 2.9172 = 4.8620 < 6.3207] w=0.5124 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)W203.CB) [> 3.1197 = 5.1995 < 6.7594] w=0.5124 to align # Constraint # added constraint: constraint((T0293)K59.CB, (T0293)L79.CB) [> 3.8040 = 6.3400 < 8.2420] w=0.5116 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)W203.CB) [> 4.3702 = 7.2836 < 9.4687] w=0.5059 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)R202.CB) [> 3.6919 = 6.1532 < 7.9992] w=0.4930 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)C206.CB) [> 2.9911 = 4.9851 < 6.4807] w=0.4896 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)L79.CB) [> 4.0475 = 6.7459 < 8.7697] w=0.4892 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)S205.CB) [> 4.3319 = 7.2198 < 9.3857] w=0.4801 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)G198.CA) [> 3.0510 = 5.0849 < 6.6104] w=0.4737 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)S194.CB) [> 3.1840 = 5.3066 < 6.8986] w=0.4687 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)G198.CA) [> 3.5055 = 5.8425 < 7.5953] w=0.4672 to align # Constraint # added constraint: constraint((T0293)E49.CB, (T0293)L78.CB) [> 3.7252 = 6.2087 < 8.0713] w=0.4642 to align # Constraint # added constraint: constraint((T0293)V93.CB, (T0293)Q121.CB) [> 4.3640 = 7.2733 < 9.4553] w=0.4633 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)W203.CB) [> 4.3174 = 7.1957 < 9.3544] w=0.4608 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)M207.CB) [> 4.1711 = 6.9519 < 9.0375] w=0.4444 to align # Constraint # added constraint: constraint((T0293)N143.CB, (T0293)M207.CB) [> 2.8369 = 4.7282 < 6.1466] w=0.4367 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)L125.CB) [> 3.4349 = 5.7249 < 7.4423] w=0.4314 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)L197.CB) [> 3.3637 = 5.6062 < 7.2880] w=0.4285 to align # Constraint # added constraint: constraint((T0293)G80.CA, (T0293)L113.CB) [> 3.5247 = 5.8745 < 7.6368] w=0.4232 to align # Constraint # added constraint: constraint((T0293)S194.CB, (T0293)Y204.CB) [> 3.5108 = 5.8514 < 7.6068] w=0.4171 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)M141.CB) [> 4.4024 = 7.3373 < 9.5385] w=0.4126 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)Y204.CB) [> 4.5560 = 7.5934 < 9.8714] w=0.4078 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)L197.CB) [> 3.9183 = 6.5305 < 8.4896] w=0.3963 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)L124.CB) [> 4.3326 = 7.2210 < 9.3872] w=0.3938 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)L197.CB) [> 3.7447 = 6.2412 < 8.1136] w=0.3898 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)A90.CB) [> 4.5636 = 7.6060 < 9.8878] w=0.3890 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)Y204.CB) [> 4.3914 = 7.3191 < 9.5148] w=0.3841 to align # Constraint # added constraint: constraint((T0293)L51.CB, (T0293)S205.CB) [> 3.5401 = 5.9001 < 7.6701] w=0.3833 to align # Constraint # added constraint: constraint((T0293)Y76.CB, (T0293)V116.CB) [> 4.5052 = 7.5087 < 9.7613] w=0.3829 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)L78.CB) [> 3.4783 = 5.7972 < 7.5364] w=0.3824 to align # Constraint # added constraint: constraint((T0293)L62.CB, (T0293)D138.CB) [> 3.1862 = 5.3103 < 6.9033] w=0.3791 to align # Constraint # added constraint: constraint((T0293)W86.CB, (T0293)L113.CB) [> 4.0617 = 6.7695 < 8.8004] w=0.3781 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)K102.CB) [> 4.5135 = 7.5225 < 9.7793] w=0.3761 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)T82.CB) [> 3.5715 = 5.9525 < 7.7383] w=0.3710 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)F186.CB) [> 3.1913 = 5.3187 < 6.9144] w=0.3705 to align # Constraint # added constraint: constraint((T0293)T61.CB, (T0293)L83.CB) [> 3.8473 = 6.4121 < 8.3358] w=0.3632 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)L83.CB) [> 3.5152 = 5.8587 < 7.6163] w=0.3632 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)P120.CB) [> 4.3783 = 7.2972 < 9.4864] w=0.3503 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)P144.CB) [> 3.8313 = 6.3855 < 8.3011] w=0.3395 to align # Constraint # added constraint: constraint((T0293)R64.CB, (T0293)I135.CB) [> 3.9463 = 6.5771 < 8.5503] w=0.3345 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)E185.CB) [> 4.2791 = 7.1319 < 9.2715] w=0.3333 to align # Constraint # added constraint: constraint((T0293)M141.CB, (T0293)E185.CB) [> 3.1072 = 5.1787 < 6.7323] w=0.3269 to align # Constraint # added constraint: constraint((T0293)Y231.CB, (T0293)W242.CB) [> 3.7919 = 6.3199 < 8.2158] w=0.3265 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)L184.CB) [> 2.8702 = 4.7837 < 6.2188] w=0.3204 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)E183.CB) [> 3.1890 = 5.3150 < 6.9095] w=0.3204 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)N170.CB) [> 4.0426 = 6.7377 < 8.7590] w=0.3198 to align # Constraint # added constraint: constraint((T0293)V229.CB, (T0293)L244.CB) [> 3.4988 = 5.8314 < 7.5808] w=0.3193 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)M141.CB) [> 4.1247 = 6.8744 < 8.9368] w=0.3181 to align # Constraint # added constraint: constraint((T0293)Q121.CB, (T0293)I190.CB) [> 3.5333 = 5.8888 < 7.6555] w=0.3084 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)M178.CB) [> 3.5223 = 5.8706 < 7.6317] w=0.3075 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)I174.CB) [> 3.1772 = 5.2953 < 6.8839] w=0.3075 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)E185.CB) [> 4.3141 = 7.1902 < 9.3473] w=0.3075 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)G182.CA) [> 3.9218 = 6.5364 < 8.4973] w=0.3075 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)G182.CA) [> 3.3758 = 5.6264 < 7.3143] w=0.3075 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)N143.CB) [> 4.3753 = 7.2922 < 9.4799] w=0.3045 to align # Constraint # added constraint: constraint((T0293)Y231.CB, (T0293)A243.CB) [> 3.8856 = 6.4760 < 8.4189] w=0.3022 to align # Constraint # added constraint: constraint((T0293)V229.CB, (T0293)A245.CB) [> 3.6615 = 6.1026 < 7.9333] w=0.3014 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)A179.CB) [> 3.5749 = 5.9582 < 7.7456] w=0.3011 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)M178.CB) [> 3.4532 = 5.7553 < 7.4819] w=0.3011 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)I177.CB) [> 3.4729 = 5.7882 < 7.5247] w=0.3011 to align # Constraint # added constraint: constraint((T0293)I135.CB, (T0293)L197.CB) [> 4.0273 = 6.7122 < 8.7259] w=0.2951 to align # Constraint # added constraint: constraint((T0293)I174.CB, (T0293)L184.CB) [> 3.4297 = 5.7161 < 7.4309] w=0.2946 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)A179.CB) [> 3.9519 = 6.5865 < 8.5625] w=0.2946 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)I177.CB) [> 3.9079 = 6.5132 < 8.4672] w=0.2946 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)P144.CB) [> 4.1452 = 6.9086 < 8.9812] w=0.2943 to align # Constraint # added constraint: constraint((T0293)L51.CB, (T0293)I75.CB) [> 4.0494 = 6.7489 < 8.7736] w=0.2901 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)M141.CB) [> 4.1945 = 6.9908 < 9.0880] w=0.2900 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)A179.CB) [> 3.1468 = 5.2447 < 6.8181] w=0.2882 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)E185.CB) [> 4.2486 = 7.0811 < 9.2054] w=0.2875 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)L110.CB) [> 4.5423 = 7.5704 < 9.8415] w=0.2858 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)I174.CB) [> 4.0621 = 6.7702 < 8.8013] w=0.2827 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)E183.CB) [> 4.4019 = 7.3364 < 9.5373] w=0.2817 to align # Constraint # added constraint: constraint((T0293)Y231.CB, (T0293)L244.CB) [> 4.0172 = 6.6954 < 8.7040] w=0.2815 to align # Constraint # added constraint: constraint((T0293)T230.CB, (T0293)L244.CB) [> 3.7229 = 6.2049 < 8.0663] w=0.2806 to align # Constraint # added constraint: constraint((T0293)L51.CB, (T0293)M141.CB) [> 3.8049 = 6.3416 < 8.2440] w=0.2772 to align # Constraint # added constraint: constraint((T0293)Y137.CB, (T0293)G182.CA) [> 4.3556 = 7.2593 < 9.4371] w=0.2768 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)R202.CB) [> 4.2777 = 7.1295 < 9.2684] w=0.2767 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)L184.CB) [> 4.5350 = 7.5584 < 9.8259] w=0.2746 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)L79.CB) [> 4.1759 = 6.9598 < 9.0478] w=0.2710 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)I190.CB) [> 3.9117 = 6.5195 < 8.4754] w=0.2679 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)L83.CB) [> 3.8699 = 6.4498 < 8.3847] w=0.2664 to align # Constraint # added constraint: constraint((T0293)Y204.CB, (T0293)A245.CB) [> 3.8560 = 6.4267 < 8.3547] w=0.2644 to align # Constraint # added constraint: constraint((T0293)S205.CB, (T0293)A243.CB) [> 3.7821 = 6.3035 < 8.1946] w=0.2644 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)I177.CB) [> 3.8404 = 6.4006 < 8.3208] w=0.2624 to align # Constraint # added constraint: constraint((T0293)T232.CB, (T0293)W242.CB) [> 3.8038 = 6.3396 < 8.2415] w=0.2622 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)L201.CB) [> 4.4453 = 7.4088 < 9.6314] w=0.2594 to align # Constraint # added constraint: constraint((T0293)S205.CB, (T0293)L244.CB) [> 3.9741 = 6.6235 < 8.6106] w=0.2580 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)I75.CB) [> 4.3012 = 7.1687 < 9.3193] w=0.2577 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)L184.CB) [> 4.3381 = 7.2301 < 9.3992] w=0.2567 to align # Constraint # added constraint: constraint((T0293)T232.CB, (T0293)A243.CB) [> 3.6048 = 6.0079 < 7.8103] w=0.2553 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)I190.CB) [> 3.9418 = 6.5696 < 8.5405] w=0.2551 to align # Constraint # added constraint: constraint((T0293)Y87.CB, (T0293)D112.CB) [> 3.3344 = 5.5573 < 7.2245] w=0.2530 to align # Constraint # added constraint: constraint((T0293)T230.CB, (T0293)A243.CB) [> 3.6357 = 6.0595 < 7.8773] w=0.2501 to align # Constraint # added constraint: constraint((T0293)Y231.CB, (T0293)R241.CB) [> 3.8518 = 6.4197 < 8.3456] w=0.2452 to align # Constraint # added constraint: constraint((T0293)M207.CB, (T0293)W242.CB) [> 4.0409 = 6.7348 < 8.7553] w=0.2451 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)A101.CB) [> 4.4855 = 7.4758 < 9.7185] w=0.2436 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)D112.CB) [> 3.9226 = 6.5376 < 8.4989] w=0.2387 to align # Constraint # added constraint: constraint((T0293)L208.CB, (T0293)W242.CB) [> 3.7803 = 6.3004 < 8.1906] w=0.2386 to align # Constraint # added constraint: constraint((T0293)Q121.CB, (T0293)N170.CB) [> 3.4706 = 5.7843 < 7.5196] w=0.2374 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)V187.CB) [> 3.9385 = 6.5642 < 8.5335] w=0.2365 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)E134.CB) [> 3.6591 = 6.0985 < 7.9280] w=0.2355 to align # Constraint # added constraint: constraint((T0293)C206.CB, (T0293)A243.CB) [> 3.8455 = 6.4091 < 8.3318] w=0.2321 to align # Constraint # added constraint: constraint((T0293)K218.CB, (T0293)Y231.CB) [> 4.0786 = 6.7976 < 8.8369] w=0.2312 to align # Constraint # added constraint: constraint((T0293)T232.CB, (T0293)R241.CB) [> 3.4905 = 5.8175 < 7.5628] w=0.2307 to align # Constraint # added constraint: constraint((T0293)Y44.CB, (T0293)C74.CB) [> 3.7674 = 6.2789 < 8.1626] w=0.2307 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)I135.CB) [> 4.1842 = 6.9737 < 9.0658] w=0.2258 to align # Constraint # added constraint: constraint((T0293)I75.CB, (T0293)C142.CB) [> 4.3981 = 7.3302 < 9.5293] w=0.2255 to align # Constraint # added constraint: constraint((T0293)V229.CB, (T0293)A243.CB) [> 3.8317 = 6.3862 < 8.3020] w=0.2243 to align # Constraint # added constraint: constraint((T0293)I136.CB, (T0293)M178.CB) [> 4.2042 = 7.0070 < 9.1091] w=0.2237 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)P145.CB) [> 3.7123 = 6.1872 < 8.0434] w=0.2230 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)L124.CB) [> 4.1574 = 6.9290 < 9.0077] w=0.2207 to align # Constraint # added constraint: constraint((T0293)Y44.CB, (T0293)I75.CB) [> 3.9324 = 6.5540 < 8.5202] w=0.2194 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)I174.CB) [> 4.1158 = 6.8597 < 8.9176] w=0.2181 to align # Constraint # added constraint: constraint((T0293)A122.CB, (T0293)R189.CB) [> 3.6068 = 6.0113 < 7.8146] w=0.2181 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)M207.CB) [> 4.1053 = 6.8422 < 8.8948] w=0.2142 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)V119.CB) [> 4.5210 = 7.5349 < 9.7954] w=0.2133 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)L125.CB) [> 3.7821 = 6.3035 < 8.1946] w=0.2128 to align # Constraint # added constraint: constraint((T0293)M207.CB, (T0293)R241.CB) [> 3.8277 = 6.3795 < 8.2934] w=0.2128 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)N160.CB) [> 3.6049 = 6.0081 < 7.8105] w=0.2125 to align # Constraint # added constraint: constraint((T0293)T171.CB, (T0293)E220.CB) [> 3.4035 = 5.6725 < 7.3743] w=0.2124 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)N143.CB) [> 4.2524 = 7.0874 < 9.2136] w=0.2078 to align # Constraint # added constraint: constraint((T0293)G85.CA, (T0293)D112.CB) [> 3.9210 = 6.5351 < 8.4956] w=0.2065 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)N160.CB) [> 4.0327 = 6.7211 < 8.7374] w=0.2059 to align # Constraint # added constraint: constraint((T0293)I135.CB, (T0293)I177.CB) [> 4.0939 = 6.8231 < 8.8700] w=0.2056 to align # Constraint # added constraint: constraint((T0293)T171.CB, (T0293)L221.CB) [> 3.8291 = 6.3818 < 8.2964] w=0.2052 to align # Constraint # added constraint: constraint((T0293)D138.CB, (T0293)M178.CB) [> 4.5161 = 7.5268 < 9.7848] w=0.2048 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)M240.CB) [> 3.5906 = 5.9844 < 7.7797] w=0.1999 to align # Constraint # added constraint: constraint((T0293)T175.CB, (T0293)Q224.CB) [> 3.0081 = 5.0135 < 6.5176] w=0.1987 to align # Constraint # added constraint: constraint((T0293)I191.CB, (T0293)E220.CB) [> 3.4744 = 5.7906 < 7.5278] w=0.1936 to align # Constraint # added constraint: constraint((T0293)P77.CB, (T0293)F88.CB) [> 4.5208 = 7.5346 < 9.7950] w=0.1936 to align # Constraint # added constraint: constraint((T0293)S168.CB, (T0293)E220.CB) [> 3.4765 = 5.7941 < 7.5323] w=0.1930 to align # Constraint # added constraint: constraint((T0293)K218.CB, (T0293)V229.CB) [> 3.5653 = 5.9422 < 7.7248] w=0.1930 to align # Constraint # added constraint: constraint((T0293)V93.CB, (T0293)L125.CB) [> 4.3213 = 7.2022 < 9.3629] w=0.1929 to align # Constraint # added constraint: constraint((T0293)Y44.CB, (T0293)N143.CB) [> 4.0973 = 6.8288 < 8.8775] w=0.1890 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)L129.CB) [> 4.1321 = 6.8869 < 8.9530] w=0.1872 to align # Constraint # added constraint: constraint((T0293)E185.CB, (T0293)A243.CB) [> 3.8326 = 6.3876 < 8.3039] w=0.1865 to align # Constraint # added constraint: constraint((T0293)I191.CB, (T0293)L221.CB) [> 4.0134 = 6.6890 < 8.6957] w=0.1856 to align # Constraint # added constraint: constraint((T0293)V119.CB, (T0293)A128.CB) [> 3.0274 = 5.0457 < 6.5595] w=0.1855 to align # Constraint # added constraint: constraint((T0293)V229.CB, (T0293)W246.CB) [> 3.5929 = 5.9882 < 7.7846] w=0.1853 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)C97.CB) [> 4.6079 = 7.6798 < 9.9837] w=0.1806 to align # Constraint # added constraint: constraint((T0293)G172.CA, (T0293)Q224.CB) [> 3.2328 = 5.3880 < 7.0044] w=0.1801 to align # Constraint # added constraint: constraint((T0293)P161.CB, (T0293)N170.CB) [> 4.2959 = 7.1598 < 9.3078] w=0.1796 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)N170.CB) [> 4.0282 = 6.7136 < 8.7277] w=0.1784 to align # Constraint # added constraint: constraint((T0293)T171.CB, (T0293)L184.CB) [> 4.1837 = 6.9728 < 9.0646] w=0.1784 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)C97.CB) [> 4.5686 = 7.6143 < 9.8986] w=0.1742 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)M178.CB) [> 4.4492 = 7.4152 < 9.6398] w=0.1737 to align # Constraint # added constraint: constraint((T0293)Q121.CB, (T0293)G173.CA) [> 4.1974 = 6.9956 < 9.0943] w=0.1714 to align # Constraint # added constraint: constraint((T0293)T171.CB, (T0293)Q224.CB) [> 2.9907 = 4.9845 < 6.4799] w=0.1672 to align # Constraint # added constraint: constraint((T0293)N160.CB, (T0293)N170.CB) [> 3.4454 = 5.7423 < 7.4650] w=0.1672 to align # Constraint # added constraint: constraint((T0293)L184.CB, (T0293)A245.CB) [> 3.7296 = 6.2160 < 8.0808] w=0.1671 to align # Constraint # added constraint: constraint((T0293)V117.CB, (T0293)A128.CB) [> 3.7147 = 6.1911 < 8.0484] w=0.1667 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)L208.CB) [> 3.6974 = 6.1623 < 8.0110] w=0.1662 to align # Constraint # added constraint: constraint((T0293)V226.CB, (T0293)W246.CB) [> 3.4632 = 5.7720 < 7.5037] w=0.1662 to align # Constraint # added constraint: constraint((T0293)M141.CB, (T0293)F186.CB) [> 4.4881 = 7.4801 < 9.7242] w=0.1614 to align # Constraint # added constraint: constraint((T0293)K102.CB, (T0293)S111.CB) [> 4.3235 = 7.2058 < 9.3675] w=0.1613 to align # Constraint # added constraint: constraint((T0293)C74.CB, (T0293)N143.CB) [> 4.3709 = 7.2849 < 9.4704] w=0.1613 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)T239.CB) [> 3.4949 = 5.8249 < 7.5724] w=0.1612 to align # Constraint # added constraint: constraint((T0293)L214.CB, (T0293)Y231.CB) [> 3.9053 = 6.5089 < 8.4616] w=0.1608 to align # Constraint # added constraint: constraint((T0293)E185.CB, (T0293)L244.CB) [> 3.8828 = 6.4714 < 8.4128] w=0.1607 to align # Constraint # added constraint: constraint((T0293)E183.CB, (T0293)A245.CB) [> 3.8139 = 6.3565 < 8.2634] w=0.1607 to align # Constraint # added constraint: constraint((T0293)F186.CB, (T0293)A243.CB) [> 3.7944 = 6.3240 < 8.2213] w=0.1600 to align # Constraint # added constraint: constraint((T0293)K228.CB, (T0293)A245.CB) [> 3.4839 = 5.8065 < 7.5484] w=0.1598 to align # Constraint # added constraint: constraint((T0293)I191.CB, (T0293)L217.CB) [> 4.1781 = 6.9636 < 9.0526] w=0.1598 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)N143.CB) [> 4.1469 = 6.9115 < 8.9849] w=0.1561 to align # Constraint # added constraint: constraint((T0293)T175.CB, (T0293)V226.CB) [> 3.7727 = 6.2878 < 8.1741] w=0.1548 to align # Constraint # added constraint: constraint((T0293)L208.CB, (T0293)L217.CB) [> 3.5727 = 5.9546 < 7.7409] w=0.1543 to align # Constraint # added constraint: constraint((T0293)L184.CB, (T0293)L244.CB) [> 3.6351 = 6.0585 < 7.8761] w=0.1542 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)L217.CB) [> 3.5156 = 5.8594 < 7.6172] w=0.1536 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)M141.CB) [> 4.4994 = 7.4990 < 9.7487] w=0.1533 to align # Constraint # added constraint: constraint((T0293)I52.CB, (T0293)E185.CB) [> 3.5092 = 5.8487 < 7.6033] w=0.1526 to align # Constraint # added constraint: constraint((T0293)G53.CA, (T0293)L78.CB) [> 4.2424 = 7.0706 < 9.1918] w=0.1496 to align # Constraint # added constraint: constraint((T0293)F186.CB, (T0293)W242.CB) [> 3.7372 = 6.2287 < 8.0974] w=0.1490 to align # Constraint # added constraint: constraint((T0293)E185.CB, (T0293)W242.CB) [> 4.0541 = 6.7568 < 8.7839] w=0.1490 to align # Constraint # added constraint: constraint((T0293)T91.CB, (T0293)L129.CB) [> 3.7762 = 6.2937 < 8.1818] w=0.1485 to align # Constraint # added constraint: constraint((T0293)H46.CB, (T0293)L78.CB) [> 4.1838 = 6.9730 < 9.0649] w=0.1484 to align # Constraint # added constraint: constraint((T0293)C206.CB, (T0293)L217.CB) [> 3.6625 = 6.1041 < 7.9354] w=0.1484 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)I190.CB) [> 3.5705 = 5.9508 < 7.7360] w=0.1469 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)G182.CA) [> 4.6227 = 7.7045 < 10.0159] w=0.1462 to align # Constraint # added constraint: constraint((T0293)E183.CB, (T0293)L244.CB) [> 3.9812 = 6.6353 < 8.6259] w=0.1426 to align # Constraint # added constraint: constraint((T0293)W86.CB, (T0293)F139.CB) [> 4.5101 = 7.5168 < 9.7719] w=0.1419 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)P164.CB) [> 3.4610 = 5.7684 < 7.4989] w=0.1414 to align # Constraint # added constraint: constraint((T0293)I66.CB, (T0293)R163.CB) [> 3.9429 = 6.5715 < 8.5430] w=0.1414 to align # Constraint # added constraint: constraint((T0293)L40.CB, (T0293)C74.CB) [> 3.6893 = 6.1488 < 7.9935] w=0.1409 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)W242.CB) [> 3.7691 = 6.2818 < 8.1664] w=0.1404 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)F186.CB) [> 3.7648 = 6.2746 < 8.1570] w=0.1389 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)S205.CB) [> 3.8616 = 6.4360 < 8.3668] w=0.1384 to align # Constraint # added constraint: constraint((T0293)M141.CB, (T0293)L184.CB) [> 4.6193 = 7.6989 < 10.0085] w=0.1361 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)P161.CB) [> 3.5420 = 5.9034 < 7.6744] w=0.1356 to align # Constraint # added constraint: constraint((T0293)I27.CB, (T0293)P77.CB) [> 4.1735 = 6.9559 < 9.0427] w=0.1355 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)L217.CB) [> 3.8977 = 6.4962 < 8.4450] w=0.1355 to align # Constraint # added constraint: constraint((T0293)L184.CB, (T0293)V226.CB) [> 4.1155 = 6.8592 < 8.9169] w=0.1355 to align # Constraint # added constraint: constraint((T0293)L221.CB, (T0293)A243.CB) [> 3.8292 = 6.3819 < 8.2965] w=0.1350 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)N160.CB) [> 3.0982 = 5.1636 < 6.7126] w=0.1349 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)R241.CB) [> 3.5603 = 5.9338 < 7.7139] w=0.1349 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)W242.CB) [> 4.1569 = 6.9282 < 9.0067] w=0.1349 to align # Constraint # added constraint: constraint((T0293)E49.CB, (T0293)I75.CB) [> 3.8446 = 6.4076 < 8.3299] w=0.1347 to align # Constraint # added constraint: constraint((T0293)L221.CB, (T0293)L244.CB) [> 3.7020 = 6.1700 < 8.0210] w=0.1344 to align # Constraint # added constraint: constraint((T0293)L51.CB, (T0293)E185.CB) [> 3.7741 = 6.2901 < 8.1772] w=0.1334 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)F88.CB) [> 4.5719 = 7.6199 < 9.9059] w=0.1332 to align # Constraint # added constraint: constraint((T0293)V119.CB, (T0293)L129.CB) [> 3.9892 = 6.6487 < 8.6433] w=0.1292 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)S158.CB) [> 3.7404 = 6.2339 < 8.1041] w=0.1292 to align # Constraint # added constraint: constraint((T0293)I27.CB, (T0293)A72.CB) [> 3.6168 = 6.0280 < 7.8365] w=0.1290 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)R163.CB) [> 3.8587 = 6.4311 < 8.3605] w=0.1285 to align # Constraint # added constraint: constraint((T0293)T171.CB, (T0293)F186.CB) [> 3.7002 = 6.1670 < 8.0172] w=0.1283 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)C206.CB) [> 3.9583 = 6.5971 < 8.5762] w=0.1283 to align # Constraint # added constraint: constraint((T0293)F146.CB, (T0293)L208.CB) [> 3.8043 = 6.3405 < 8.2427] w=0.1275 to align # Constraint # added constraint: constraint((T0293)V48.CB, (T0293)E185.CB) [> 3.6471 = 6.0785 < 7.9021] w=0.1270 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)N143.CB) [> 4.5501 = 7.5834 < 9.8585] w=0.1239 to align # Constraint # added constraint: constraint((T0293)A148.CB, (T0293)G209.CA) [> 3.6728 = 6.1214 < 7.9578] w=0.1232 to align # Constraint # added constraint: constraint((T0293)G182.CA, (T0293)W246.CB) [> 3.4719 = 5.7865 < 7.5225] w=0.1232 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)E220.CB) [> 3.3027 = 5.5045 < 7.1558] w=0.1226 to align # Constraint # added constraint: constraint((T0293)L34.CB, (T0293)A72.CB) [> 3.8784 = 6.4640 < 8.4032] w=0.1226 to align # Constraint # added constraint: constraint((T0293)I27.CB, (T0293)C74.CB) [> 3.8184 = 6.3639 < 8.2731] w=0.1226 to align # Constraint # added constraint: constraint((T0293)H192.CB, (T0293)Q224.CB) [> 3.6996 = 6.1660 < 8.0159] w=0.1226 to align # Constraint # added constraint: constraint((T0293)L195.CB, (T0293)V226.CB) [> 3.7953 = 6.3254 < 8.2231] w=0.1226 to align # Constraint # added constraint: constraint((T0293)P144.CB, (T0293)C206.CB) [> 3.6572 = 6.0953 < 7.9239] w=0.1224 to align # Constraint # added constraint: constraint((T0293)N143.CB, (T0293)F186.CB) [> 4.4448 = 7.4079 < 9.6303] w=0.1218 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)V156.CB) [> 3.8512 = 6.4186 < 8.3442] w=0.1217 to align # Constraint # added constraint: constraint((T0293)F186.CB, (T0293)L244.CB) [> 3.8926 = 6.4876 < 8.4339] w=0.1213 to align # Constraint # added constraint: constraint((T0293)G181.CA, (T0293)W246.CB) [> 3.5126 = 5.8544 < 7.6107] w=0.1168 to align # Constraint # added constraint: constraint((T0293)Q121.CB, (T0293)P144.CB) [> 4.3263 = 7.2104 < 9.3735] w=0.1168 to align # Constraint # added constraint: constraint((T0293)P161.CB, (T0293)F186.CB) [> 3.6600 = 6.0999 < 7.9299] w=0.1162 to align # Constraint # added constraint: constraint((T0293)L214.CB, (T0293)R241.CB) [> 3.8007 = 6.3346 < 8.2349] w=0.1161 to align # Constraint # added constraint: constraint((T0293)L89.CB, (T0293)L124.CB) [> 4.4745 = 7.4576 < 9.6948] w=0.1161 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)I114.CB) [> 4.5918 = 7.6531 < 9.9490] w=0.1161 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)M141.CB) [> 4.4504 = 7.4173 < 9.6425] w=0.1161 to align # Constraint # added constraint: constraint((T0293)L25.CB, (T0293)L78.CB) [> 3.8919 = 6.4865 < 8.4325] w=0.1156 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)V169.CB) [> 3.0820 = 5.1367 < 6.6777] w=0.1156 to align # Constraint # added constraint: constraint((T0293)A153.CB, (T0293)E220.CB) [> 3.6971 = 6.1618 < 8.0104] w=0.1156 to align # Constraint # added constraint: constraint((T0293)K154.CB, (T0293)E220.CB) [> 3.4538 = 5.7563 < 7.4832] w=0.1156 to align # Constraint # added constraint: constraint((T0293)N157.CB, (T0293)E220.CB) [> 3.4800 = 5.8000 < 7.5400] w=0.1156 to align # Constraint # added constraint: constraint((T0293)M126.CB, (T0293)R159.CB) [> 4.1476 = 6.9127 < 8.9865] w=0.1156 to align # Constraint # added constraint: constraint((T0293)L221.CB, (T0293)Y231.CB) [> 4.0814 = 6.8024 < 8.8431] w=0.1141 to align # Constraint # added constraint: constraint((T0293)F147.CB, (T0293)L208.CB) [> 3.5708 = 5.9514 < 7.7368] w=0.1098 to align # Constraint # added constraint: constraint((T0293)F147.CB, (T0293)G209.CA) [> 3.9421 = 6.5701 < 8.5412] w=0.1098 to align # Constraint # added constraint: constraint((T0293)W86.CB, (T0293)D138.CB) [> 4.7242 = 7.8737 < 10.2359] w=0.1097 to align # Constraint # added constraint: constraint((T0293)L62.CB, (T0293)T82.CB) [> 3.9246 = 6.5411 < 8.5034] w=0.1097 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)S167.CB) [> 3.2297 = 5.3828 < 6.9976] w=0.1097 to align # Constraint # added constraint: constraint((T0293)N157.CB, (T0293)L221.CB) [> 3.7172 = 6.1953 < 8.0539] w=0.1091 to align # Constraint # added constraint: constraint((T0293)G181.CA, (T0293)S247.CB) [> 3.4861 = 5.8102 < 7.5532] w=0.1090 to align # Constraint # added constraint: constraint((T0293)V38.CB, (T0293)A72.CB) [> 3.4876 = 5.8126 < 7.5564] w=0.1086 to align # Constraint # added constraint: constraint((T0293)E185.CB, (T0293)A245.CB) [> 3.8592 = 6.4319 < 8.3615] w=0.1084 to align # Constraint # added constraint: constraint((T0293)F146.CB, (T0293)G209.CA) [> 3.6866 = 6.1444 < 7.9877] w=0.1082 to align # Constraint # added constraint: constraint((T0293)K228.CB, (T0293)S247.CB) [> 3.5379 = 5.8965 < 7.6654] w=0.1079 to align # Constraint # added constraint: constraint((T0293)I27.CB, (T0293)N104.CB) [> 3.1041 = 5.1735 < 6.7256] w=0.1032 to align # Constraint # added constraint: constraint((T0293)F147.CB, (T0293)C212.CB) [> 3.6298 = 6.0497 < 7.8647] w=0.1027 to align # Constraint # added constraint: constraint((T0293)V38.CB, (T0293)C74.CB) [> 3.7835 = 6.3058 < 8.1976] w=0.1022 to align # Constraint # added constraint: constraint((T0293)H192.CB, (T0293)E220.CB) [> 4.2194 = 7.0323 < 9.1420] w=0.1017 to align # Constraint # added constraint: constraint((T0293)L25.CB, (T0293)N108.CB) [> 3.3640 = 5.6067 < 7.2888] w=0.0968 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)P216.CB) [> 3.8309 = 6.3848 < 8.3003] w=0.0968 to align # Constraint # added constraint: constraint((T0293)G80.CA, (T0293)N108.CB) [> 4.3728 = 7.2879 < 9.4743] w=0.0968 to align # Constraint # added constraint: constraint((T0293)L201.CB, (T0293)W246.CB) [> 4.1367 = 6.8946 < 8.9629] w=0.0968 to align # Constraint # added constraint: constraint((T0293)R189.CB, (T0293)T239.CB) [> 3.6197 = 6.0329 < 7.8427] w=0.0967 to align # Constraint # added constraint: constraint((T0293)G69.CA, (T0293)N160.CB) [> 2.8993 = 4.8322 < 6.2819] w=0.0962 to align # Constraint # added constraint: constraint((T0293)F139.CB, (T0293)P164.CB) [> 4.5191 = 7.5318 < 9.7914] w=0.0962 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)C212.CB) [> 4.0556 = 6.7593 < 8.7871] w=0.0960 to align # Constraint # added constraint: constraint((T0293)Y44.CB, (T0293)V187.CB) [> 3.9885 = 6.6474 < 8.6416] w=0.0960 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)W242.CB) [> 3.9031 = 6.5052 < 8.4568] w=0.0955 to align # Constraint # added constraint: constraint((T0293)R189.CB, (T0293)M240.CB) [> 4.2320 = 7.0533 < 9.1693] w=0.0955 to align # Constraint # added constraint: constraint((T0293)R63.CB, (T0293)T82.CB) [> 4.6552 = 7.7586 < 10.0862] w=0.0922 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)M240.CB) [> 4.0449 = 6.7415 < 8.7639] w=0.0910 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)R238.CB) [> 3.7365 = 6.2274 < 8.0957] w=0.0910 to align # Constraint # added constraint: constraint((T0293)L124.CB, (T0293)I174.CB) [> 4.0724 = 6.7873 < 8.8235] w=0.0904 to align # Constraint # added constraint: constraint((T0293)L208.CB, (T0293)T239.CB) [> 3.8253 = 6.3754 < 8.2881] w=0.0903 to align # Constraint # added constraint: constraint((T0293)F147.CB, (T0293)V156.CB) [> 3.8421 = 6.4034 < 8.3244] w=0.0903 to align # Constraint # added constraint: constraint((T0293)G181.CA, (T0293)F248.CB) [> 3.4504 = 5.7507 < 7.4759] w=0.0897 to align # Constraint # added constraint: constraint((T0293)V117.CB, (T0293)S133.CB) [> 4.3003 = 7.1672 < 9.3174] w=0.0896 to align # Constraint # added constraint: constraint((T0293)E49.CB, (T0293)C74.CB) [> 4.0194 = 6.6991 < 8.7088] w=0.0896 to align # Constraint # added constraint: constraint((T0293)R33.CB, (T0293)G71.CA) [> 3.7410 = 6.2350 < 8.1055] w=0.0845 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)M240.CB) [> 3.5121 = 5.8535 < 7.6095] w=0.0845 to align # Constraint # added constraint: constraint((T0293)R33.CB, (T0293)A72.CB) [> 3.8330 = 6.3884 < 8.3049] w=0.0839 to align # Constraint # added constraint: constraint((T0293)C142.CB, (T0293)T171.CB) [> 4.1178 = 6.8630 < 8.9219] w=0.0839 to align # Constraint # added constraint: constraint((T0293)N84.CB, (T0293)D112.CB) [> 4.2373 = 7.0621 < 9.1807] w=0.0839 to align # Constraint # added constraint: constraint((T0293)W47.CB, (T0293)F234.CB) [> 3.7310 = 6.2184 < 8.0839] w=0.0839 to align # Constraint # added constraint: constraint((T0293)E180.CB, (T0293)F248.CB) [> 3.2732 = 5.4553 < 7.0919] w=0.0832 to align # Constraint # added constraint: constraint((T0293)M178.CB, (T0293)W246.CB) [> 3.6009 = 6.0015 < 7.8019] w=0.0832 to align # Constraint # added constraint: constraint((T0293)F234.CB, (T0293)A243.CB) [> 3.9977 = 6.6629 < 8.6617] w=0.0826 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)E220.CB) [> 3.8284 = 6.3807 < 8.2949] w=0.0774 to align # Constraint # added constraint: constraint((T0293)F23.CB, (T0293)L78.CB) [> 3.2204 = 5.3674 < 6.9776] w=0.0774 to align # Constraint # added constraint: constraint((T0293)R162.CB, (T0293)A211.CB) [> 3.6396 = 6.0660 < 7.8858] w=0.0774 to align # Constraint # added constraint: constraint((T0293)L214.CB, (T0293)W242.CB) [> 3.5247 = 5.8744 < 7.6367] w=0.0769 to align # Constraint # added constraint: constraint((T0293)S167.CB, (T0293)F186.CB) [> 3.8260 = 6.3767 < 8.2897] w=0.0767 to align # Constraint # added constraint: constraint((T0293)S167.CB, (T0293)E220.CB) [> 3.5448 = 5.9079 < 7.6803] w=0.0766 to align # Constraint # added constraint: constraint((T0293)R189.CB, (T0293)R241.CB) [> 3.9111 = 6.5184 < 8.4740] w=0.0761 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)L110.CB) [> 4.1233 = 6.8721 < 8.9337] w=0.0751 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)C142.CB) [> 4.4225 = 7.3709 < 9.5822] w=0.0751 to align # Constraint # added constraint: constraint((T0293)N99.CB, (T0293)K118.CB) [> 4.5044 = 7.5073 < 9.7595] w=0.0729 to align # Constraint # added constraint: constraint((T0293)E180.CB, (T0293)S247.CB) [> 3.6195 = 6.0324 < 7.8422] w=0.0716 to align # Constraint # added constraint: constraint((T0293)N160.CB, (T0293)V187.CB) [> 3.8320 = 6.3867 < 8.3027] w=0.0711 to align # Constraint # added constraint: constraint((T0293)A148.CB, (T0293)L208.CB) [> 4.0671 = 6.7785 < 8.8120] w=0.0711 to align # Constraint # added constraint: constraint((T0293)T37.CB, (T0293)A72.CB) [> 4.0671 = 6.7785 < 8.8120] w=0.0710 to align # Constraint # added constraint: constraint((T0293)L40.CB, (T0293)N143.CB) [> 3.6061 = 6.0102 < 7.8132] w=0.0710 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)F186.CB) [> 4.6073 = 7.6788 < 9.9824] w=0.0709 to align # Constraint # added constraint: constraint((T0293)F146.CB, (T0293)C212.CB) [> 4.2701 = 7.1168 < 9.2518] w=0.0705 to align # Constraint # added constraint: constraint((T0293)F146.CB, (T0293)K188.CB) [> 4.1295 = 6.8825 < 8.9473] w=0.0702 to align # Constraint # added constraint: constraint((T0293)K188.CB, (T0293)T239.CB) [> 3.6585 = 6.0975 < 7.9268] w=0.0652 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)S158.CB) [> 4.2809 = 7.1348 < 9.2753] w=0.0652 to align # Constraint # added constraint: constraint((T0293)L214.CB, (T0293)A243.CB) [> 3.8586 = 6.4311 < 8.3604] w=0.0645 to align # Constraint # added constraint: constraint((T0293)L184.CB, (T0293)S213.CB) [> 3.3042 = 5.5070 < 7.1591] w=0.0645 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)P145.CB) [> 4.4272 = 7.3787 < 9.5923] w=0.0645 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)S167.CB) [> 4.1163 = 6.8604 < 8.9186] w=0.0645 to align # Constraint # added constraint: constraint((T0293)G173.CA, (T0293)R189.CB) [> 3.3695 = 5.6158 < 7.3005] w=0.0638 to align # Constraint # added constraint: constraint((T0293)G182.CA, (T0293)A245.CB) [> 3.8048 = 6.3413 < 8.2437] w=0.0587 to align # Constraint # added constraint: constraint((T0293)R162.CB, (T0293)G209.CA) [> 3.6963 = 6.1605 < 8.0086] w=0.0581 to align # Constraint # added constraint: constraint((T0293)L34.CB, (T0293)G71.CA) [> 3.9730 = 6.6216 < 8.6081] w=0.0581 to align # Constraint # added constraint: constraint((T0293)L201.CB, (T0293)A245.CB) [> 4.1394 = 6.8990 < 8.9686] w=0.0581 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)L89.CB) [> 4.7654 = 7.9424 < 10.3251] w=0.0581 to align # Constraint # added constraint: constraint((T0293)V187.CB, (T0293)L244.CB) [> 4.3618 = 7.2696 < 9.4505] w=0.0575 to align # Constraint # added constraint: constraint((T0293)F146.CB, (T0293)V187.CB) [> 3.9092 = 6.5153 < 8.4700] w=0.0573 to align # Constraint # added constraint: constraint((T0293)P145.CB, (T0293)F186.CB) [> 3.5977 = 5.9961 < 7.7949] w=0.0573 to align # Constraint # added constraint: constraint((T0293)P166.CB, (T0293)E220.CB) [> 4.3078 = 7.1797 < 9.3336] w=0.0573 to align # Constraint # added constraint: constraint((T0293)L19.CB, (T0293)I29.CB) [> 4.0117 = 6.6862 < 8.6921] w=0.0523 to align # Constraint # added constraint: constraint((T0293)N160.CB, (T0293)K188.CB) [> 4.0872 = 6.8120 < 8.8557] w=0.0523 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)C74.CB) [> 4.0189 = 6.6982 < 8.7077] w=0.0522 to align # Constraint # added constraint: constraint((T0293)R20.CB, (T0293)I29.CB) [> 3.7379 = 6.2299 < 8.0989] w=0.0516 to align # Constraint # added constraint: constraint((T0293)N143.CB, (T0293)K188.CB) [> 3.9808 = 6.6346 < 8.6250] w=0.0516 to align # Constraint # added constraint: constraint((T0293)F23.CB, (T0293)A81.CB) [> 4.3311 = 7.2185 < 9.3840] w=0.0516 to align # Constraint # added constraint: constraint((T0293)V105.CB, (T0293)K115.CB) [> 4.5163 = 7.5272 < 9.7853] w=0.0516 to align # Constraint # added constraint: constraint((T0293)I27.CB, (T0293)S73.CB) [> 4.1525 = 6.9209 < 8.9971] w=0.0516 to align # Constraint # added constraint: constraint((T0293)L34.CB, (T0293)C74.CB) [> 3.5294 = 5.8824 < 7.6471] w=0.0516 to align # Constraint # added constraint: constraint((T0293)F147.CB, (T0293)A211.CB) [> 3.4779 = 5.7965 < 7.5354] w=0.0511 to align # Constraint # added constraint: constraint((T0293)P161.CB, (T0293)K188.CB) [> 3.9432 = 6.5720 < 8.5436] w=0.0510 to align # Constraint # added constraint: constraint((T0293)P145.CB, (T0293)I190.CB) [> 4.1342 = 6.8904 < 8.9575] w=0.0501 to align # Constraint # added constraint: constraint((T0293)V117.CB, (T0293)M126.CB) [> 4.2582 = 7.0969 < 9.2260] w=0.0501 to align # Constraint # added constraint: constraint((T0293)R189.CB, (T0293)R238.CB) [> 3.8759 = 6.4598 < 8.3977] w=0.0458 to align # Constraint # added constraint: constraint((T0293)P145.CB, (T0293)G209.CA) [> 3.7627 = 6.2712 < 8.1525] w=0.0458 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)A72.CB) [> 3.7066 = 6.1776 < 8.0309] w=0.0458 to align # Constraint # added constraint: constraint((T0293)V38.CB, (T0293)G71.CA) [> 3.5474 = 5.9124 < 7.6861] w=0.0452 to align # Constraint # added constraint: constraint((T0293)P145.CB, (T0293)G182.CA) [> 3.6810 = 6.1350 < 7.9755] w=0.0452 to align # Constraint # added constraint: constraint((T0293)C16.CB, (T0293)L31.CB) [> 3.6484 = 6.0806 < 7.9048] w=0.0452 to align # Constraint # added constraint: constraint((T0293)L19.CB, (T0293)D28.CB) [> 3.6672 = 6.1120 < 7.9456] w=0.0452 to align # Constraint # added constraint: constraint((T0293)T37.CB, (T0293)M96.CB) [> 3.4219 = 5.7032 < 7.4141] w=0.0452 to align # Constraint # added constraint: constraint((T0293)F23.CB, (T0293)I45.CB) [> 3.6090 = 6.0150 < 7.8195] w=0.0452 to align # Constraint # added constraint: constraint((T0293)S73.CB, (T0293)N108.CB) [> 3.8618 = 6.4364 < 8.3673] w=0.0452 to align # Constraint # added constraint: constraint((T0293)W47.CB, (T0293)M240.CB) [> 3.8776 = 6.4627 < 8.4015] w=0.0452 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)F146.CB) [> 3.9469 = 6.5782 < 8.5516] w=0.0452 to align # Constraint # added constraint: constraint((T0293)L14.CB, (T0293)A72.CB) [> 3.8131 = 6.3551 < 8.2617] w=0.0452 to align # Constraint # added constraint: constraint((T0293)D22.CB, (T0293)C74.CB) [> 3.7072 = 6.1787 < 8.0323] w=0.0446 to align # Constraint # added constraint: constraint((T0293)L124.CB, (T0293)C140.CB) [> 4.1911 = 6.9851 < 9.0806] w=0.0400 to align # Constraint # added constraint: constraint((T0293)L34.CB, (T0293)M96.CB) [> 3.9495 = 6.5825 < 8.5572] w=0.0387 to align # Constraint # added constraint: constraint((T0293)I68.CB, (T0293)P120.CB) [> 4.6118 = 7.6864 < 9.9923] w=0.0387 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)A90.CB) [> 3.4476 = 5.7460 < 7.4698] w=0.0387 to align # Constraint # added constraint: constraint((T0293)Y44.CB, (T0293)M240.CB) [> 4.0684 = 6.7806 < 8.8148] w=0.0387 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)C235.CB) [> 4.2732 = 7.1220 < 9.2586] w=0.0387 to align # Constraint # added constraint: constraint((T0293)R20.CB, (T0293)I35.CB) [> 3.7516 = 6.2527 < 8.1286] w=0.0387 to align # Constraint # added constraint: constraint((T0293)T15.CB, (T0293)C74.CB) [> 3.9418 = 6.5697 < 8.5406] w=0.0387 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)N108.CB) [> 3.4095 = 5.6825 < 7.3873] w=0.0372 to align # Constraint # added constraint: constraint((T0293)N108.CB, (T0293)K118.CB) [> 3.8021 = 6.3368 < 8.2379] w=0.0372 to align # Constraint # added constraint: constraint((T0293)T17.CB, (T0293)I29.CB) [> 4.3966 = 7.3276 < 9.5259] w=0.0329 to align # Constraint # added constraint: constraint((T0293)T15.CB, (T0293)I29.CB) [> 3.6648 = 6.1080 < 7.9404] w=0.0323 to align # Constraint # added constraint: constraint((T0293)E183.CB, (T0293)G209.CA) [> 4.1274 = 6.8790 < 8.9427] w=0.0323 to align # Constraint # added constraint: constraint((T0293)D22.CB, (T0293)A72.CB) [> 4.1433 = 6.9054 < 8.9771] w=0.0323 to align # Constraint # added constraint: constraint((T0293)L14.CB, (T0293)C97.CB) [> 4.1857 = 6.9761 < 9.0689] w=0.0322 to align # Constraint # added constraint: constraint((T0293)D67.CB, (T0293)G80.CA) [> 4.4170 = 7.3616 < 9.5701] w=0.0322 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)E220.CB) [> 4.3493 = 7.2489 < 9.4236] w=0.0317 to align # Constraint # added constraint: constraint((T0293)C140.CB, (T0293)P161.CB) [> 4.5828 = 7.6380 < 9.9294] w=0.0317 to align # Constraint # added constraint: constraint((T0293)I45.CB, (T0293)F234.CB) [> 4.1314 = 6.8857 < 8.9514] w=0.0315 to align # Constraint # added constraint: constraint((T0293)E176.CB, (T0293)I191.CB) [> 4.0205 = 6.7008 < 8.7111] w=0.0315 to align # Constraint # added constraint: constraint((T0293)A90.CB, (T0293)N108.CB) [> 4.2938 = 7.1563 < 9.3032] w=0.0307 to align # Constraint # added constraint: constraint((T0293)L14.CB, (T0293)C74.CB) [> 3.9614 = 6.6024 < 8.5831] w=0.0264 to align # Constraint # added constraint: constraint((T0293)A13.CB, (T0293)L31.CB) [> 4.4137 = 7.3561 < 9.5629] w=0.0258 to align # Constraint # added constraint: constraint((T0293)C16.CB, (T0293)I29.CB) [> 3.5176 = 5.8626 < 7.6214] w=0.0258 to align # Constraint # added constraint: constraint((T0293)P145.CB, (T0293)G181.CA) [> 3.3695 = 5.6158 < 7.3005] w=0.0258 to align # Constraint # added constraint: constraint((T0293)L34.CB, (T0293)S73.CB) [> 4.3848 = 7.3080 < 9.5004] w=0.0258 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)L42.CB) [> 4.0437 = 6.7395 < 8.7613] w=0.0258 to align # Constraint # added constraint: constraint((T0293)T15.CB, (T0293)I35.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.0258 to align # Constraint # added constraint: constraint((T0293)K210.CB, (T0293)C235.CB) [> 3.3579 = 5.5965 < 7.2755] w=0.0258 to align # Constraint # added constraint: constraint((T0293)P161.CB, (T0293)L201.CB) [> 3.0509 = 5.0849 < 6.6104] w=0.0258 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)N108.CB) [> 4.3707 = 7.2845 < 9.4698] w=0.0243 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)N108.CB) [> 3.2613 = 5.4355 < 7.0661] w=0.0243 to align # Constraint # added constraint: constraint((T0293)A122.CB, (T0293)I174.CB) [> 4.5910 = 7.6516 < 9.9471] w=0.0200 to align # Constraint # added constraint: constraint((T0293)A13.CB, (T0293)N108.CB) [> 3.5320 = 5.8866 < 7.6526] w=0.0200 to align # Constraint # added constraint: constraint((T0293)R12.CB, (T0293)L42.CB) [> 4.0597 = 6.7661 < 8.7960] w=0.0194 to align # Constraint # added constraint: constraint((T0293)A72.CB, (T0293)V116.CB) [> 4.1657 = 6.9428 < 9.0257] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)P145.CB) [> 3.4925 = 5.8209 < 7.5671] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)V93.CB) [> 4.5269 = 7.5448 < 9.8083] w=0.0194 to align # Constraint # added constraint: constraint((T0293)C74.CB, (T0293)N108.CB) [> 2.4102 = 4.0171 < 5.2222] w=0.0194 to align # Constraint # added constraint: constraint((T0293)G71.CA, (T0293)V93.CB) [> 4.7597 = 7.9329 < 10.3128] w=0.0194 to align # Constraint # added constraint: constraint((T0293)V11.CB, (T0293)L31.CB) [> 3.8785 = 6.4642 < 8.4035] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T17.CB, (T0293)S26.CB) [> 4.0190 = 6.6983 < 8.7078] w=0.0194 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)I45.CB) [> 3.9052 = 6.5087 < 8.4613] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)L89.CB) [> 4.5104 = 7.5174 < 9.7726] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T70.CB, (T0293)F88.CB) [> 4.7701 = 7.9501 < 10.3351] w=0.0194 to align # Constraint # added constraint: constraint((T0293)R12.CB, (T0293)I45.CB) [> 4.2198 = 7.0331 < 9.1430] w=0.0194 to align # Constraint # added constraint: constraint((T0293)V11.CB, (T0293)N108.CB) [> 3.3076 = 5.5127 < 7.1665] w=0.0194 to align # Constraint # added constraint: constraint((T0293)L14.CB, (T0293)N108.CB) [> 4.1493 = 6.9154 < 8.9900] w=0.0194 to align # Constraint # added constraint: constraint((T0293)G209.CA, (T0293)K218.CB) [> 4.0371 = 6.7285 < 8.7470] w=0.0194 to align # Constraint # added constraint: constraint((T0293)T17.CB, (T0293)A72.CB) [> 3.2546 = 5.4243 < 7.0516] w=0.0135 to align # Constraint # added constraint: constraint((T0293)A13.CB, (T0293)I35.CB) [> 3.5570 = 5.9283 < 7.7068] w=0.0129 to align # Constraint # added constraint: constraint((T0293)G65.CA, (T0293)L201.CB) [> 4.6451 = 7.7418 < 10.0643] w=0.0129 to align # Constraint # added constraint: constraint((T0293)R12.CB, (T0293)R41.CB) [> 3.9145 = 6.5241 < 8.4813] w=0.0129 to align # Constraint # added constraint: constraint((T0293)P161.CB, (T0293)E220.CB) [> 4.1398 = 6.8997 < 8.9696] w=0.0129 to align # Constraint # added constraint: constraint((T0293)F88.CB, (T0293)N108.CB) [> 4.4709 = 7.4515 < 9.6869] w=0.0129 to align # Constraint # added constraint: constraint((T0293)D94.CB, (T0293)V119.CB) [> 4.4540 = 7.4233 < 9.6503] w=0.0129 to align # Constraint # added constraint: constraint((T0293)V11.CB, (T0293)A72.CB) [> 3.6855 = 6.1425 < 7.9853] w=0.0129 to align # Constraint # added constraint: constraint((T0293)V11.CB, (T0293)W47.CB) [> 3.8677 = 6.4461 < 8.3799] w=0.0129 to align # Constraint # added constraint: constraint((T0293)T17.CB, (T0293)L40.CB) [> 3.8461 = 6.4101 < 8.3331] w=0.0129 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)G71.CA) [> 4.7509 = 7.9182 < 10.2937] w=0.0129 to align # Constraint # added constraint: constraint((T0293)F5.CB, (T0293)T17.CB) [> 4.0787 = 6.7979 < 8.8373] w=0.0129 to align # Constraint # added constraint: constraint((T0293)F5.CB, (T0293)L14.CB) [> 4.1676 = 6.9459 < 9.0297] w=0.0129 to align # Constraint # added constraint: constraint((T0293)N143.CB, (T0293)E183.CB) [> 4.6938 = 7.8230 < 10.1699] w=0.0099 to align # Constraint # added constraint: constraint((T0293)T17.CB, (T0293)C74.CB) [> 2.3866 = 3.9777 < 5.1711] w=0.0071 to align # Constraint # added constraint: constraint((T0293)C16.CB, (T0293)N108.CB) [> 2.7011 = 4.5019 < 5.8524] w=0.0071 to align # Constraint # added constraint: constraint((T0293)C16.CB, (T0293)C74.CB) [> 4.6680 = 7.7800 < 10.1140] w=0.0071 to align # Constraint # added constraint: constraint((T0293)K115.CB, (T0293)L125.CB) [> 4.7697 = 7.9495 < 10.3344] w=0.0065 to align # Constraint # added constraint: constraint((T0293)F5.CB, (T0293)L19.CB) [> 3.4182 = 5.6969 < 7.4060] w=0.0065 to align # Constraint # added constraint: constraint((T0293)F5.CB, (T0293)C16.CB) [> 3.2137 = 5.3561 < 6.9629] w=0.0065 to align # Constraint # added constraint: constraint((T0293)N4.CB, (T0293)T17.CB) [> 3.2081 = 5.3469 < 6.9510] w=0.0065 to align # Constraint # added constraint: constraint((T0293)F5.CB, (T0293)D94.CB) [> 4.6570 = 7.7617 < 10.0902] w=0.0065 to align # Constraint # added constraint: constraint((T0293)N143.CB, (T0293)G209.CA) [> 3.5556 = 5.9260 < 7.7037] w=0.0065 to align # Constraint # added constraint: constraint((T0293)L25.CB, (T0293)N84.CB) [> 4.7141 = 7.8568 < 10.2138] w=0.0065 to align # Constraint # added constraint: constraint((T0293)C16.CB, (T0293)C235.CB) [> 4.5892 = 7.6487 < 9.9433] w=0.0065 to align # Constraint # added constraint: constraint((T0293)L18.CB, (T0293)L34.CB) [> 3.5655 = 5.9426 < 7.7253] w=0.0065 to align # Constraint # added constraint: constraint((T0293)A13.CB, (T0293)F248.CB) [> 4.1148 = 6.8580 < 8.9153] w=0.0065 to align # Constraint # added constraint: constraint((T0293)A13.CB, (T0293)I45.CB) [> 3.4993 = 5.8322 < 7.5819] w=0.0065 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0293/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0293/decoys/ # ReadConformPDB reading from PDB file chimera1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry4.proto.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file lineup230and245take1.2rotateNterminusAndMove.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file lineup230and245take1.9rotateNtermSlide33-37helix.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.1FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.2FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1.2andMoveH33-37.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over1FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file shift232over2FromTry8.renum.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0293)A179.C and (T0293)E180.N only 0 apart, marking (T0293)E180.N as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CA only 0 apart, marking (T0293)E180.CA as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CA only 0 apart, marking (T0293)E180.CA as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CB only 0 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CB only 0 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CB only 0 apart, marking (T0293)E180.CB as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.CG only 0 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CG only 0 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CG only 0 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CG only 0 apart, marking (T0293)E180.CG as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.CD only 0 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.CD only 0 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.CD only 0 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.CD only 0 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.CD only 0 apart, marking (T0293)E180.CD as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.OE1 only 0 apart, marking (T0293)E180.OE1 as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.OE2 only 0 apart, marking (T0293)E180.OE2 as missing WARNING: atoms too close: (T0293)E180.OE2 and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.O only 0 apart, marking (T0293)E180.O as missing WARNING: atoms too close: (T0293)E180.O and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.OE2 and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.OE1 and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CD and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CG and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CB and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.CA and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)E180.N and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing WARNING: atoms too close: (T0293)A179.C and (T0293)E180.C only 0 apart, marking (T0293)E180.C as missing # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0293 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 260 model score 0.0931 model score -0.0744 model score -0.0924 model score -0.0926 model score -0.0757 model score -0.0819 model score -0.0832 model score -0.0800 model score -0.0684 model score 0.1647 model score 0.1724 model score 0.1782 model score 0.1515 model score 0.1892 model score 0.1074 model score 0.0980 model score 0.1048 model score 0.1517 model score -0.0473 model score 0.1505 model score 0.1196 model score 0.0696 model score 0.0707 model score 0.1079 model score 0.2295 model score 0.1180 model score 0.1911 model score 0.4884 model score 0.9008 model score 1.4670 model score 1.4301 model score 1.6241 model score 1.7187 model score 1.5024 model score -0.2902 model score -0.1264 model score -0.1266 model score -0.1337 model score 0.0319 model score -0.1267 model score -0.1317 model score -0.1450 model score -0.1828 model score -0.1805 model score -0.1596 model score -0.1073 model score -0.2138 model score 0.1127 model score -0.2044 model score 0.5842 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.2134 model score -0.0422 model score -0.1192 model score -0.1450 model score -0.2105 model score -0.1961 model score -0.1315 model score -0.1450 model score -0.1450 model score -0.1317 model score 0.2295 model score 0.4131 model score 0.1274 model score 0.2334 model score 0.8490 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.6016 model score 0.0376 model score 0.1598 model score -0.0709 model score 0.0252 model score 0.9442 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.1961 model score -0.2237 model score -0.1315 model score 0.1955 model score 0.1943 model score 0.0454 model score -0.1302 model score -0.1691 model score -0.2147 model score -0.2585 model score -0.2551 model score -0.2479 model score 1.8207 model score 1.3829 model score 1.6642 model score 1.6261 model score 1.5415 model score -0.1807 model score -0.0074 model score -0.1747 model score -0.1108 model score -0.1832 model score -0.2003 model score -0.0256 model score -0.1615 model score -0.0654 model score -0.0131 model score -0.1321 model score -0.1196 model score -0.1373 model score -0.2120 model score -0.1306 model score -0.1709 model score 2.0575 model score 2.2111 model score 2.2316 model score 2.2360 model score 2.0866 model score -0.0877 model score -0.0894 model score -0.1040 model score -0.0952 model score -0.1789 model score -0.1838 model score -0.0758 model score 0.0590 model score 0.1334 model score -0.1725 model score -0.1641 model score -0.1464 model score -0.1635 model score 0.0636 model score -0.1413 model score -0.1650 model score -0.2105 model score -0.1576 model score -0.1360 model score -0.2146 model score -0.1430 model score -0.1139 model score -0.1253 model score -0.1471 model score -0.0936 model score -0.1276 model score 0.0181 model score -0.1877 model score -0.1394 model score -0.1246 model score -0.0701 model score -0.1273 model score 0.0171 model score -0.0754 model score 1.0349 model score -0.1930 model score -0.1746 model score -0.2128 model score -0.1714 model score -0.0786 model score -0.1568 model score -0.0899 model score -0.1493 model score -0.1430 model score -0.1410 model score -0.1632 model score -0.2258 model score -0.0521 model score -0.0863 model score -0.0231 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.0675 model score 0.2998 model score -0.2667 model score -0.2879 model score -0.2594 model score -0.1394 model score -0.1192 model score 0.0148 model score 0.2865 model score 0.2356 model score -0.1487 model score -0.0778 model score 0.0199 model score 0.1993 model score 0.0117 model score -0.1680 model score -0.1237 model score -0.0142 model score 0.2327 model score 0.1293 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.2460 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.2228 model score -0.2246 model score -0.1545 model score -0.1545 model score -0.1776 model score -0.1900 model score -0.0868 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.1581 model score -0.2324 model score 0.0902 model score -0.1858 model score -0.1592 model score 1.7806 model score -0.2064 model score -0.1490 model score -0.1175 model score 0.0451 model score -0.0709 model score -0.0400 model score -0.0788 model score -0.1433 model score -0.0281 model score -0.0074 model score -0.2024 model score -0.2252 model score 0.2253 model score -0.1507 model score 0.1235 model score 0.0865 model score -0.0599 weight: 0.8807 eval: 0.0931 min: -0.2902 max: 2.6016 weight: 0.9328 eval: -0.0744 min: -0.2902 max: 2.6016 weight: 0.9385 eval: -0.0924 min: -0.2902 max: 2.6016 weight: 0.9385 eval: -0.0926 min: -0.2902 max: 2.6016 weight: 0.9332 eval: -0.0757 min: -0.2902 max: 2.6016 weight: 0.9352 eval: -0.0819 min: -0.2902 max: 2.6016 weight: 0.9356 eval: -0.0832 min: -0.2902 max: 2.6016 weight: 0.9346 eval: -0.0800 min: -0.2902 max: 2.6016 weight: 0.9310 eval: -0.0684 min: -0.2902 max: 2.6016 weight: 0.8584 eval: 0.1647 min: -0.2902 max: 2.6016 weight: 0.8560 eval: 0.1724 min: -0.2902 max: 2.6016 weight: 0.8542 eval: 0.1782 min: -0.2902 max: 2.6016 weight: 0.8625 eval: 0.1515 min: -0.2902 max: 2.6016 weight: 0.8508 eval: 0.1892 min: -0.2902 max: 2.6016 weight: 0.8762 eval: 0.1074 min: -0.2902 max: 2.6016 weight: 0.8792 eval: 0.0980 min: -0.2902 max: 2.6016 weight: 0.8771 eval: 0.1048 min: -0.2902 max: 2.6016 weight: 0.8625 eval: 0.1517 min: -0.2902 max: 2.6016 weight: 0.9244 eval: -0.0473 min: -0.2902 max: 2.6016 weight: 0.8629 eval: 0.1505 min: -0.2902 max: 2.6016 weight: 0.8725 eval: 0.1196 min: -0.2902 max: 2.6016 weight: 0.8880 eval: 0.0696 min: -0.2902 max: 2.6016 weight: 0.8877 eval: 0.0707 min: -0.2902 max: 2.6016 weight: 0.8761 eval: 0.1079 min: -0.2902 max: 2.6016 weight: 0.8383 eval: 0.2295 min: -0.2902 max: 2.6016 weight: 0.8730 eval: 0.1180 min: -0.2902 max: 2.6016 weight: 0.8502 eval: 0.1911 min: -0.2902 max: 2.6016 weight: 0.7577 eval: 0.4884 min: -0.2902 max: 2.6016 weight: 0.6293 eval: 0.9008 min: -0.2902 max: 2.6016 weight: 0.4531 eval: 1.4670 min: -0.2902 max: 2.6016 weight: 0.4646 eval: 1.4301 min: -0.2902 max: 2.6016 weight: 0.4042 eval: 1.6241 min: -0.2902 max: 2.6016 weight: 0.3748 eval: 1.7187 min: -0.2902 max: 2.6016 weight: 0.4421 eval: 1.5024 min: -0.2902 max: 2.6016 weight: 1.0000 eval: -0.2902 min: -0.2902 max: 2.6016 weight: 0.9490 eval: -0.1264 min: -0.2902 max: 2.6016 weight: 0.9491 eval: -0.1266 min: -0.2902 max: 2.6016 weight: 0.9513 eval: -0.1337 min: -0.2902 max: 2.6016 weight: 0.8997 eval: 0.0319 min: -0.2902 max: 2.6016 weight: 0.9491 eval: -0.1267 min: -0.2902 max: 2.6016 weight: 0.9507 eval: -0.1317 min: -0.2902 max: 2.6016 weight: 0.9548 eval: -0.1450 min: -0.2902 max: 2.6016 weight: 0.9666 eval: -0.1828 min: -0.2902 max: 2.6016 weight: 0.9659 eval: -0.1805 min: -0.2902 max: 2.6016 weight: 0.9594 eval: -0.1596 min: -0.2902 max: 2.6016 weight: 0.9431 eval: -0.1073 min: -0.2902 max: 2.6016 weight: 0.9762 eval: -0.2138 min: -0.2902 max: 2.6016 weight: 0.8746 eval: 0.1127 min: -0.2902 max: 2.6016 weight: 0.9733 eval: -0.2044 min: -0.2902 max: 2.6016 weight: 0.7279 eval: 0.5842 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9761 eval: -0.2134 min: -0.2902 max: 2.6016 weight: 0.9228 eval: -0.0422 min: -0.2902 max: 2.6016 weight: 0.9468 eval: -0.1192 min: -0.2902 max: 2.6016 weight: 0.9548 eval: -0.1450 min: -0.2902 max: 2.6016 weight: 0.9752 eval: -0.2105 min: -0.2902 max: 2.6016 weight: 0.9707 eval: -0.1961 min: -0.2902 max: 2.6016 weight: 0.9506 eval: -0.1315 min: -0.2902 max: 2.6016 weight: 0.9548 eval: -0.1450 min: -0.2902 max: 2.6016 weight: 0.9548 eval: -0.1450 min: -0.2902 max: 2.6016 weight: 0.9507 eval: -0.1317 min: -0.2902 max: 2.6016 weight: 0.8383 eval: 0.2295 min: -0.2902 max: 2.6016 weight: 0.7811 eval: 0.4131 min: -0.2902 max: 2.6016 weight: 0.8700 eval: 0.1274 min: -0.2902 max: 2.6016 weight: 0.8370 eval: 0.2334 min: -0.2902 max: 2.6016 weight: 0.6454 eval: 0.8490 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.1000 eval: 2.6016 min: -0.2902 max: 2.6016 weight: 0.8980 eval: 0.0376 min: -0.2902 max: 2.6016 weight: 0.8600 eval: 0.1598 min: -0.2902 max: 2.6016 weight: 0.9317 eval: -0.0709 min: -0.2902 max: 2.6016 weight: 0.9018 eval: 0.0252 min: -0.2902 max: 2.6016 weight: 0.6158 eval: 0.9442 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9707 eval: -0.1961 min: -0.2902 max: 2.6016 weight: 0.9793 eval: -0.2237 min: -0.2902 max: 2.6016 weight: 0.9506 eval: -0.1315 min: -0.2902 max: 2.6016 weight: 0.8488 eval: 0.1955 min: -0.2902 max: 2.6016 weight: 0.8492 eval: 0.1943 min: -0.2902 max: 2.6016 weight: 0.8955 eval: 0.0454 min: -0.2902 max: 2.6016 weight: 0.9502 eval: -0.1302 min: -0.2902 max: 2.6016 weight: 0.9623 eval: -0.1691 min: -0.2902 max: 2.6016 weight: 0.9765 eval: -0.2147 min: -0.2902 max: 2.6016 weight: 0.9901 eval: -0.2585 min: -0.2902 max: 2.6016 weight: 0.9891 eval: -0.2551 min: -0.2902 max: 2.6016 weight: 0.9868 eval: -0.2479 min: -0.2902 max: 2.6016 weight: 0.3430 eval: 1.8207 min: -0.2902 max: 2.6016 weight: 0.4793 eval: 1.3829 min: -0.2902 max: 2.6016 weight: 0.3917 eval: 1.6642 min: -0.2902 max: 2.6016 weight: 0.4036 eval: 1.6261 min: -0.2902 max: 2.6016 weight: 0.4299 eval: 1.5415 min: -0.2902 max: 2.6016 weight: 0.9659 eval: -0.1807 min: -0.2902 max: 2.6016 weight: 0.9120 eval: -0.0074 min: -0.2902 max: 2.6016 weight: 0.9641 eval: -0.1747 min: -0.2902 max: 2.6016 weight: 0.9442 eval: -0.1108 min: -0.2902 max: 2.6016 weight: 0.9667 eval: -0.1832 min: -0.2902 max: 2.6016 weight: 0.9720 eval: -0.2003 min: -0.2902 max: 2.6016 weight: 0.9176 eval: -0.0256 min: -0.2902 max: 2.6016 weight: 0.9599 eval: -0.1615 min: -0.2902 max: 2.6016 weight: 0.9300 eval: -0.0654 min: -0.2902 max: 2.6016 weight: 0.9138 eval: -0.0131 min: -0.2902 max: 2.6016 weight: 0.9508 eval: -0.1321 min: -0.2902 max: 2.6016 weight: 0.9469 eval: -0.1196 min: -0.2902 max: 2.6016 weight: 0.9524 eval: -0.1373 min: -0.2902 max: 2.6016 weight: 0.9757 eval: -0.2120 min: -0.2902 max: 2.6016 weight: 0.9503 eval: -0.1306 min: -0.2902 max: 2.6016 weight: 0.9629 eval: -0.1709 min: -0.2902 max: 2.6016 weight: 0.2693 eval: 2.0575 min: -0.2902 max: 2.6016 weight: 0.2215 eval: 2.2111 min: -0.2902 max: 2.6016 weight: 0.2152 eval: 2.2316 min: -0.2902 max: 2.6016 weight: 0.2138 eval: 2.2360 min: -0.2902 max: 2.6016 weight: 0.2603 eval: 2.0866 min: -0.2902 max: 2.6016 weight: 0.9370 eval: -0.0877 min: -0.2902 max: 2.6016 weight: 0.9375 eval: -0.0894 min: -0.2902 max: 2.6016 weight: 0.9420 eval: -0.1040 min: -0.2902 max: 2.6016 weight: 0.9393 eval: -0.0952 min: -0.2902 max: 2.6016 weight: 0.9653 eval: -0.1789 min: -0.2902 max: 2.6016 weight: 0.9669 eval: -0.1838 min: -0.2902 max: 2.6016 weight: 0.9333 eval: -0.0758 min: -0.2902 max: 2.6016 weight: 0.8913 eval: 0.0590 min: -0.2902 max: 2.6016 weight: 0.8682 eval: 0.1334 min: -0.2902 max: 2.6016 weight: 0.9634 eval: -0.1725 min: -0.2902 max: 2.6016 weight: 0.9608 eval: -0.1641 min: -0.2902 max: 2.6016 weight: 0.9552 eval: -0.1464 min: -0.2902 max: 2.6016 weight: 0.9606 eval: -0.1635 min: -0.2902 max: 2.6016 weight: 0.8899 eval: 0.0636 min: -0.2902 max: 2.6016 weight: 0.9536 eval: -0.1413 min: -0.2902 max: 2.6016 weight: 0.9610 eval: -0.1650 min: -0.2902 max: 2.6016 weight: 0.9752 eval: -0.2105 min: -0.2902 max: 2.6016 weight: 0.9587 eval: -0.1576 min: -0.2902 max: 2.6016 weight: 0.9520 eval: -0.1360 min: -0.2902 max: 2.6016 weight: 0.9765 eval: -0.2146 min: -0.2902 max: 2.6016 weight: 0.9542 eval: -0.1430 min: -0.2902 max: 2.6016 weight: 0.9451 eval: -0.1139 min: -0.2902 max: 2.6016 weight: 0.9487 eval: -0.1253 min: -0.2902 max: 2.6016 weight: 0.9555 eval: -0.1471 min: -0.2902 max: 2.6016 weight: 0.9388 eval: -0.0936 min: -0.2902 max: 2.6016 weight: 0.9494 eval: -0.1276 min: -0.2902 max: 2.6016 weight: 0.9041 eval: 0.0181 min: -0.2902 max: 2.6016 weight: 0.9681 eval: -0.1877 min: -0.2902 max: 2.6016 weight: 0.9531 eval: -0.1394 min: -0.2902 max: 2.6016 weight: 0.9485 eval: -0.1246 min: -0.2902 max: 2.6016 weight: 0.9315 eval: -0.0701 min: -0.2902 max: 2.6016 weight: 0.9493 eval: -0.1273 min: -0.2902 max: 2.6016 weight: 0.9044 eval: 0.0171 min: -0.2902 max: 2.6016 weight: 0.9331 eval: -0.0754 min: -0.2902 max: 2.6016 weight: 0.5876 eval: 1.0349 min: -0.2902 max: 2.6016 weight: 0.9697 eval: -0.1930 min: -0.2902 max: 2.6016 weight: 0.9640 eval: -0.1746 min: -0.2902 max: 2.6016 weight: 0.9759 eval: -0.2128 min: -0.2902 max: 2.6016 weight: 0.9630 eval: -0.1714 min: -0.2902 max: 2.6016 weight: 0.9342 eval: -0.0786 min: -0.2902 max: 2.6016 weight: 0.9585 eval: -0.1568 min: -0.2902 max: 2.6016 weight: 0.9377 eval: -0.0899 min: -0.2902 max: 2.6016 weight: 0.9562 eval: -0.1493 min: -0.2902 max: 2.6016 weight: 0.9542 eval: -0.1430 min: -0.2902 max: 2.6016 weight: 0.9536 eval: -0.1410 min: -0.2902 max: 2.6016 weight: 0.9605 eval: -0.1632 min: -0.2902 max: 2.6016 weight: 0.9799 eval: -0.2258 min: -0.2902 max: 2.6016 weight: 0.9259 eval: -0.0521 min: -0.2902 max: 2.6016 weight: 0.9366 eval: -0.0863 min: -0.2902 max: 2.6016 weight: 0.9169 eval: -0.0231 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9307 eval: -0.0675 min: -0.2902 max: 2.6016 weight: 0.8164 eval: 0.2998 min: -0.2902 max: 2.6016 weight: 0.9927 eval: -0.2667 min: -0.2902 max: 2.6016 weight: 0.9993 eval: -0.2879 min: -0.2902 max: 2.6016 weight: 0.9904 eval: -0.2594 min: -0.2902 max: 2.6016 weight: 0.9531 eval: -0.1394 min: -0.2902 max: 2.6016 weight: 0.9468 eval: -0.1192 min: -0.2902 max: 2.6016 weight: 0.9051 eval: 0.0148 min: -0.2902 max: 2.6016 weight: 0.8205 eval: 0.2865 min: -0.2902 max: 2.6016 weight: 0.8364 eval: 0.2356 min: -0.2902 max: 2.6016 weight: 0.9560 eval: -0.1487 min: -0.2902 max: 2.6016 weight: 0.9339 eval: -0.0778 min: -0.2902 max: 2.6016 weight: 0.9035 eval: 0.0199 min: -0.2902 max: 2.6016 weight: 0.8477 eval: 0.1993 min: -0.2902 max: 2.6016 weight: 0.9060 eval: 0.0117 min: -0.2902 max: 2.6016 weight: 0.9620 eval: -0.1680 min: -0.2902 max: 2.6016 weight: 0.9482 eval: -0.1237 min: -0.2902 max: 2.6016 weight: 0.9141 eval: -0.0142 min: -0.2902 max: 2.6016 weight: 0.8373 eval: 0.2327 min: -0.2902 max: 2.6016 weight: 0.8694 eval: 0.1293 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9862 eval: -0.2460 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9790 eval: -0.2228 min: -0.2902 max: 2.6016 weight: 0.9796 eval: -0.2246 min: -0.2902 max: 2.6016 weight: 0.9578 eval: -0.1545 min: -0.2902 max: 2.6016 weight: 0.9578 eval: -0.1545 min: -0.2902 max: 2.6016 weight: 0.9650 eval: -0.1776 min: -0.2902 max: 2.6016 weight: 0.9688 eval: -0.1900 min: -0.2902 max: 2.6016 weight: 0.9367 eval: -0.0868 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.5122 eval: 1.2771 min: -0.2902 max: 2.6016 weight: 0.9589 eval: -0.1581 min: -0.2902 max: 2.6016 weight: 0.9820 eval: -0.2324 min: -0.2902 max: 2.6016 weight: 0.8816 eval: 0.0902 min: -0.2902 max: 2.6016 weight: 0.9675 eval: -0.1858 min: -0.2902 max: 2.6016 weight: 0.9592 eval: -0.1592 min: -0.2902 max: 2.6016 weight: 0.3555 eval: 1.7806 min: -0.2902 max: 2.6016 weight: 0.9739 eval: -0.2064 min: -0.2902 max: 2.6016 weight: 0.9561 eval: -0.1490 min: -0.2902 max: 2.6016 weight: 0.9462 eval: -0.1175 min: -0.2902 max: 2.6016 weight: 0.8957 eval: 0.0451 min: -0.2902 max: 2.6016 weight: 0.9317 eval: -0.0709 min: -0.2902 max: 2.6016 weight: 0.9221 eval: -0.0400 min: -0.2902 max: 2.6016 weight: 0.9342 eval: -0.0788 min: -0.2902 max: 2.6016 weight: 0.9543 eval: -0.1433 min: -0.2902 max: 2.6016 weight: 0.9184 eval: -0.0281 min: -0.2902 max: 2.6016 weight: 0.9120 eval: -0.0074 min: -0.2902 max: 2.6016 weight: 0.9727 eval: -0.2024 min: -0.2902 max: 2.6016 weight: 0.9798 eval: -0.2252 min: -0.2902 max: 2.6016 weight: 0.8396 eval: 0.2253 min: -0.2902 max: 2.6016 weight: 0.9566 eval: -0.1507 min: -0.2902 max: 2.6016 weight: 0.8712 eval: 0.1235 min: -0.2902 max: 2.6016 weight: 0.8828 eval: 0.0865 min: -0.2902 max: 2.6016 weight: 0.9283 eval: -0.0599 min: -0.2902 max: 2.6016 Adding 12370 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -447.5117, CN propb: -447.5117 weights: 0.3465 constraints: 728 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 728 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 728 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 11642 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 11642 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 12370 # command: