# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0292/ # command:# Making conformation for sequence T0292 numbered 1 through 277 Created new target T0292 from T0292.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0292/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0292//projects/compbio/experiments/protein-predict/casp7/T0292/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0292//projects/compbio/experiments/protein-predict/casp7/T0292/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0292/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0292/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0292)T119.CB, (T0292)I263.CB) [> 3.1803 = 5.3005 < 6.8906] w=1.0000 to align # Constraint # added constraint: constraint((T0292)T119.CB, (T0292)L200.CB) [> 4.1528 = 6.9213 < 8.9977] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)L200.CB) [> 3.7017 = 6.1695 < 8.0204] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)L155.CB) [> 4.1565 = 6.9275 < 9.0057] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)V145.CB) [> 4.0222 = 6.7037 < 8.7148] w=1.0000 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)L204.CB) [> 3.3324 = 5.5539 < 7.2201] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)L207.CB) [> 3.9627 = 6.6044 < 8.5857] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V111.CB, (T0292)C208.CB) [> 3.4859 = 5.8099 < 7.5529] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V111.CB, (T0292)L207.CB) [> 2.7217 = 4.5361 < 5.8969] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)L147.CB) [> 3.7940 = 6.3234 < 8.2204] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)V145.CB) [> 2.5677 = 4.2796 < 5.5634] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)P142.CB) [> 2.7575 = 4.5957 < 5.9745] w=1.0000 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)I82.CB) [> 3.9411 = 6.5685 < 8.5391] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)K154.CB) [> 2.9311 = 4.8851 < 6.3507] w=1.0000 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)L155.CB) [> 3.1334 = 5.2223 < 6.7890] w=1.0000 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)K154.CB) [> 3.7185 = 6.1975 < 8.0568] w=1.0000 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)A121.CB) [> 3.2930 = 5.4883 < 7.1348] w=1.0000 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)A121.CB) [> 2.2438 = 3.7397 < 4.8616] w=1.0000 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)L120.CB) [> 3.3143 = 5.5239 < 7.1811] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)Y68.CB) [> 2.6352 = 4.3920 < 5.7095] w=1.0000 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)M249.CB) [> 2.3720 = 3.9534 < 5.1394] w=1.0000 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)I246.CB) [> 3.4730 = 5.7883 < 7.5248] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L200.CB, (T0292)M249.CB) [> 3.5922 = 5.9870 < 7.7832] w=1.0000 to align # Constraint # added constraint: constraint((T0292)W198.CB, (T0292)M249.CB) [> 3.8824 = 6.4706 < 8.4118] w=1.0000 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)P258.CB) [> 3.7137 = 6.1896 < 8.0464] w=1.0000 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)M249.CB) [> 3.2913 = 5.4856 < 7.1313] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V145.CB, (T0292)L155.CB) [> 3.6339 = 6.0565 < 7.8734] w=1.0000 to align # Constraint # added constraint: constraint((T0292)V145.CB, (T0292)K154.CB) [> 4.3829 = 7.3047 < 9.4962] w=1.0000 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)S199.CB) [> 4.1309 = 6.8849 < 8.9503] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)L203.CB) [> 3.8651 = 6.4418 < 8.3743] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)L200.CB) [> 3.7225 = 6.2042 < 8.0655] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)S199.CB) [> 2.3161 = 3.8602 < 5.0183] w=1.0000 to align # Constraint # added constraint: constraint((T0292)A121.CB, (T0292)L155.CB) [> 2.8823 = 4.8038 < 6.2449] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)H137.CB) [> 4.1638 = 6.9396 < 9.0215] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)D196.CB) [> 3.3270 = 5.5450 < 7.2085] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)L200.CB) [> 4.0980 = 6.8300 < 8.8790] w=1.0000 to align # Constraint # added constraint: constraint((T0292)C125.CB, (T0292)V135.CB) [> 2.6339 = 4.3898 < 5.7068] w=1.0000 to align # Constraint # added constraint: constraint((T0292)C125.CB, (T0292)L136.CB) [> 4.3665 = 7.2775 < 9.4607] w=1.0000 to align # Constraint # added constraint: constraint((T0292)C125.CB, (T0292)H137.CB) [> 3.6710 = 6.1183 < 7.9538] w=1.0000 to align # Constraint # added constraint: constraint((T0292)H126.CB, (T0292)V135.CB) [> 4.1570 = 6.9284 < 9.0069] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)D196.CB) [> 3.5608 = 5.9346 < 7.7150] w=1.0000 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)L155.CB) [> 4.1662 = 6.9437 < 9.0268] w=1.0000 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)D196.CB) [> 3.1756 = 5.2926 < 6.8804] w=1.0000 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)D196.CB) [> 3.4343 = 5.7239 < 7.4411] w=1.0000 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)L155.CB) [> 3.7262 = 6.2103 < 8.0734] w=0.9939 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)K154.CB) [> 3.4556 = 5.7593 < 7.4871] w=0.9939 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)Q117.CB) [> 2.9969 = 4.9949 < 6.4933] w=0.9939 to align # Constraint # added constraint: constraint((T0292)T119.CB, (T0292)L264.CB) [> 3.3819 = 5.6364 < 7.3274] w=0.9818 to align # Constraint # added constraint: constraint((T0292)A93.CB, (T0292)P142.CB) [> 2.4562 = 4.0937 < 5.3218] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)S195.CB) [> 3.8636 = 6.4394 < 8.3712] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)D196.CB) [> 4.3183 = 7.1972 < 9.3564] w=0.9818 to align # Constraint # added constraint: constraint((T0292)K194.CB, (T0292)D254.CB) [> 2.4903 = 4.1504 < 5.3955] w=0.9818 to align # Constraint # added constraint: constraint((T0292)W198.CB, (T0292)L250.CB) [> 3.9234 = 6.5389 < 8.5006] w=0.9818 to align # Constraint # added constraint: constraint((T0292)K35.CB, (T0292)I82.CB) [> 2.6185 = 4.3641 < 5.6734] w=0.9818 to align # Constraint # added constraint: constraint((T0292)K35.CB, (T0292)Y81.CB) [> 4.1736 = 6.9560 < 9.0428] w=0.9818 to align # Constraint # added constraint: constraint((T0292)W34.CB, (T0292)I82.CB) [> 4.2037 = 7.0062 < 9.1081] w=0.9818 to align # Constraint # added constraint: constraint((T0292)W34.CB, (T0292)Y81.CB) [> 3.4222 = 5.7037 < 7.4148] w=0.9818 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)Y86.CB) [> 2.7873 = 4.6454 < 6.0391] w=0.9818 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)Y86.CB) [> 3.2208 = 5.3680 < 6.9784] w=0.9818 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)Y69.CB) [> 3.8649 = 6.4416 < 8.3740] w=0.9818 to align # Constraint # added constraint: constraint((T0292)I23.CB, (T0292)W34.CB) [> 2.8570 = 4.7617 < 6.1902] w=0.9818 to align # Constraint # added constraint: constraint((T0292)I23.CB, (T0292)L32.CB) [> 3.0652 = 5.1087 < 6.6413] w=0.9818 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)K35.CB) [> 3.0585 = 5.0975 < 6.6268] w=0.9818 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)W34.CB) [> 4.1812 = 6.9686 < 9.0592] w=0.9818 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)V33.CB) [> 3.5020 = 5.8368 < 7.5878] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R71.CB, (T0292)I82.CB) [> 3.2353 = 5.3922 < 7.0099] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R71.CB, (T0292)Y81.CB) [> 4.0020 = 6.6700 < 8.6710] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R58.CB, (T0292)Y68.CB) [> 3.5132 = 5.8553 < 7.6119] w=0.9818 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)E206.CB) [> 3.8250 = 6.3750 < 8.2875] w=0.9818 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)L203.CB) [> 3.7352 = 6.2253 < 8.0929] w=0.9818 to align # Constraint # added constraint: constraint((T0292)Y69.CB, (T0292)V83.CB) [> 2.8090 = 4.6816 < 6.0861] w=0.9818 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)V83.CB) [> 4.3974 = 7.3290 < 9.5277] w=0.9818 to align # Constraint # added constraint: constraint((T0292)R67.CB, (T0292)E85.CB) [> 2.8777 = 4.7962 < 6.2351] w=0.9818 to align # Constraint # added constraint: constraint((T0292)M249.CB, (T0292)P258.CB) [> 3.3844 = 5.6407 < 7.3329] w=0.9818 to align # Constraint # added constraint: constraint((T0292)L204.CB, (T0292)M249.CB) [> 4.2128 = 7.0214 < 9.1278] w=0.9818 to align # Constraint # added constraint: constraint((T0292)L204.CB, (T0292)I246.CB) [> 3.4565 = 5.7609 < 7.4892] w=0.9818 to align # Constraint # added constraint: constraint((T0292)W198.CB, (T0292)R257.CB) [> 4.0252 = 6.7087 < 8.7213] w=0.9818 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)R257.CB) [> 3.1706 = 5.2842 < 6.8695] w=0.9818 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)L155.CB) [> 4.0376 = 6.7294 < 8.7482] w=0.9818 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)L155.CB) [> 3.9095 = 6.5159 < 8.4706] w=0.9818 to align # Constraint # added constraint: constraint((T0292)E36.CB, (T0292)Y81.CB) [> 3.2827 = 5.4712 < 7.1126] w=0.9818 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)G156.CA) [> 4.1921 = 6.9869 < 9.0830] w=0.9818 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)G156.CA) [> 2.7249 = 4.5416 < 5.9040] w=0.9818 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)V153.CB) [> 3.3890 = 5.6484 < 7.3429] w=0.9818 to align # Constraint # added constraint: constraint((T0292)Q117.CB, (T0292)V153.CB) [> 2.5989 = 4.3314 < 5.6308] w=0.9818 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)V153.CB) [> 3.7859 = 6.3098 < 8.2028] w=0.9818 to align # Constraint # added constraint: constraint((T0292)F146.CB, (T0292)G156.CA) [> 3.8268 = 6.3780 < 8.2914] w=0.9818 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)I246.CB) [> 3.4971 = 5.8285 < 7.5771] w=0.9818 to align # Constraint # added constraint: constraint((T0292)H126.CB, (T0292)L136.CB) [> 4.2760 = 7.1266 < 9.2647] w=0.9818 to align # Constraint # added constraint: constraint((T0292)D91.CB, (T0292)A143.CB) [> 3.2844 = 5.4740 < 7.1162] w=0.9818 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)V153.CB) [> 3.5277 = 5.8795 < 7.6434] w=0.9757 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)K154.CB) [> 3.5566 = 5.9276 < 7.7059] w=0.9687 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)F146.CB) [> 2.4887 = 4.1478 < 5.3922] w=0.9687 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)L203.CB) [> 4.0608 = 6.7680 < 8.7984] w=0.9635 to align # Constraint # added constraint: constraint((T0292)I31.CB, (T0292)Y86.CB) [> 2.8440 = 4.7400 < 6.1620] w=0.9635 to align # Constraint # added constraint: constraint((T0292)I72.CB, (T0292)Y81.CB) [> 2.7626 = 4.6044 < 5.9857] w=0.9635 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)E85.CB) [> 3.3538 = 5.5897 < 7.2667] w=0.9635 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)L250.CB) [> 3.4247 = 5.7078 < 7.4202] w=0.9635 to align # Constraint # added constraint: constraint((T0292)Q185.CB, (T0292)S195.CB) [> 3.5658 = 5.9431 < 7.7260] w=0.9635 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)S199.CB) [> 4.1657 = 6.9428 < 9.0257] w=0.9635 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)W198.CB) [> 2.2568 = 3.7614 < 4.8898] w=0.9635 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)S195.CB) [> 2.6452 = 4.4087 < 5.7313] w=0.9635 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)K194.CB) [> 4.2989 = 7.1648 < 9.3143] w=0.9635 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)C202.CB) [> 2.9387 = 4.8978 < 6.3672] w=0.9635 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)M84.CB) [> 3.3340 = 5.5567 < 7.2237] w=0.9635 to align # Constraint # added constraint: constraint((T0292)R67.CB, (T0292)M84.CB) [> 4.1189 = 6.8648 < 8.9242] w=0.9635 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)M84.CB) [> 3.6911 = 6.1518 < 7.9974] w=0.9635 to align # Constraint # added constraint: constraint((T0292)Y69.CB, (T0292)M84.CB) [> 4.0154 = 6.6923 < 8.7000] w=0.9635 to align # Constraint # added constraint: constraint((T0292)D70.CB, (T0292)V83.CB) [> 2.4455 = 4.0759 < 5.2986] w=0.9635 to align # Constraint # added constraint: constraint((T0292)R71.CB, (T0292)V83.CB) [> 4.1324 = 6.8874 < 8.9536] w=0.9635 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)E85.CB) [> 4.0992 = 6.8320 < 8.8816] w=0.9635 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)E85.CB) [> 4.1491 = 6.9151 < 8.9896] w=0.9635 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)V83.CB) [> 3.0828 = 5.1379 < 6.6793] w=0.9635 to align # Constraint # added constraint: constraint((T0292)W34.CB, (T0292)V83.CB) [> 3.2300 = 5.3834 < 6.9984] w=0.9635 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)S195.CB) [> 3.9514 = 6.5856 < 8.5613] w=0.9635 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)G156.CA) [> 3.1202 = 5.2003 < 6.7603] w=0.9635 to align # Constraint # added constraint: constraint((T0292)V145.CB, (T0292)G156.CA) [> 4.3913 = 7.3188 < 9.5144] w=0.9635 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)F146.CB) [> 3.9342 = 6.5571 < 8.5242] w=0.9635 to align # Constraint # added constraint: constraint((T0292)I245.CB, (T0292)N266.CB) [> 3.1612 = 5.2687 < 6.8493] w=0.9574 to align # Constraint # added constraint: constraint((T0292)V8.CB, (T0292)I23.CB) [> 3.4982 = 5.8303 < 7.5794] w=0.9574 to align # Constraint # added constraint: constraint((T0292)V54.CB, (T0292)I82.CB) [> 4.0641 = 6.7736 < 8.8056] w=0.9574 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)L207.CB) [> 3.9410 = 6.5684 < 8.5389] w=0.9513 to align # Constraint # added constraint: constraint((T0292)L204.CB, (T0292)I245.CB) [> 4.2827 = 7.1378 < 9.2792] w=0.9505 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)L203.CB) [> 4.2606 = 7.1009 < 9.2312] w=0.9453 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)E193.CB) [> 3.2313 = 5.3855 < 7.0012] w=0.9453 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)D157.CB) [> 3.7287 = 6.2145 < 8.0788] w=0.9453 to align # Constraint # added constraint: constraint((T0292)C202.CB, (T0292)P213.CB) [> 3.4952 = 5.8254 < 7.5730] w=0.9453 to align # Constraint # added constraint: constraint((T0292)V111.CB, (T0292)L204.CB) [> 4.0534 = 6.7556 < 8.7823] w=0.9453 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)L252.CB) [> 3.2884 = 5.4807 < 7.1249] w=0.9453 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)L200.CB) [> 4.3303 = 7.2171 < 9.3823] w=0.9453 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)W198.CB) [> 4.4900 = 7.4833 < 9.7283] w=0.9453 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)S199.CB) [> 2.6849 = 4.4749 < 5.8174] w=0.9453 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)Y180.CB) [> 2.9337 = 4.8896 < 6.3564] w=0.9453 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)Y180.CB) [> 3.7889 = 6.3148 < 8.2093] w=0.9453 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)M84.CB) [> 3.8313 = 6.3855 < 8.3012] w=0.9453 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)M84.CB) [> 2.6433 = 4.4055 < 5.7271] w=0.9453 to align # Constraint # added constraint: constraint((T0292)K35.CB, (T0292)M84.CB) [> 3.9670 = 6.6116 < 8.5951] w=0.9453 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)V83.CB) [> 4.4245 = 7.3742 < 9.5865] w=0.9453 to align # Constraint # added constraint: constraint((T0292)H62.CB, (T0292)E124.CB) [> 2.7977 = 4.6628 < 6.0617] w=0.9453 to align # Constraint # added constraint: constraint((T0292)C208.CB, (T0292)L242.CB) [> 3.8906 = 6.4843 < 8.4296] w=0.9453 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)D157.CB) [> 2.7645 = 4.6075 < 5.9897] w=0.9453 to align # Constraint # added constraint: constraint((T0292)K123.CB, (T0292)V260.CB) [> 2.5984 = 4.3307 < 5.6299] w=0.9386 to align # Constraint # added constraint: constraint((T0292)T119.CB, (T0292)V260.CB) [> 3.3332 = 5.5554 < 7.2220] w=0.9386 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)F158.CB) [> 3.8400 = 6.4000 < 8.3200] w=0.9270 to align # Constraint # added constraint: constraint((T0292)E184.CB, (T0292)S195.CB) [> 4.0848 = 6.8080 < 8.8503] w=0.9270 to align # Constraint # added constraint: constraint((T0292)E184.CB, (T0292)D254.CB) [> 3.4205 = 5.7009 < 7.4112] w=0.9270 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)L203.CB) [> 4.2570 = 7.0951 < 9.2236] w=0.9270 to align # Constraint # added constraint: constraint((T0292)I23.CB, (T0292)V33.CB) [> 4.3579 = 7.2632 < 9.4421] w=0.9270 to align # Constraint # added constraint: constraint((T0292)I12.CB, (T0292)V33.CB) [> 3.9772 = 6.6286 < 8.6172] w=0.9270 to align # Constraint # added constraint: constraint((T0292)Y69.CB, (T0292)E85.CB) [> 4.0828 = 6.8047 < 8.8462] w=0.9270 to align # Constraint # added constraint: constraint((T0292)R19.CB, (T0292)E36.CB) [> 3.1743 = 5.2905 < 6.8777] w=0.9270 to align # Constraint # added constraint: constraint((T0292)E7.CB, (T0292)R24.CB) [> 2.8532 = 4.7553 < 6.1819] w=0.9149 to align # Constraint # added constraint: constraint((T0292)E7.CB, (T0292)I23.CB) [> 3.8024 = 6.3373 < 8.2385] w=0.9149 to align # Constraint # added constraint: constraint((T0292)Y6.CB, (T0292)I23.CB) [> 2.6436 = 4.4060 < 5.7277] w=0.9149 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)L147.CB) [> 3.9894 = 6.6491 < 8.6438] w=0.9140 to align # Constraint # added constraint: constraint((T0292)T11.CB, (T0292)C20.CB) [> 4.2904 = 7.1506 < 9.2958] w=0.9088 to align # Constraint # added constraint: constraint((T0292)Y179.CB, (T0292)C202.CB) [> 4.0540 = 6.7567 < 8.7837] w=0.9088 to align # Constraint # added constraint: constraint((T0292)A93.CB, (T0292)A143.CB) [> 2.8007 = 4.6679 < 6.0682] w=0.9088 to align # Constraint # added constraint: constraint((T0292)Q21.CB, (T0292)V33.CB) [> 4.4094 = 7.3491 < 9.5538] w=0.9088 to align # Constraint # added constraint: constraint((T0292)Q21.CB, (T0292)W34.CB) [> 3.0250 = 5.0417 < 6.5542] w=0.9088 to align # Constraint # added constraint: constraint((T0292)Q21.CB, (T0292)E36.CB) [> 4.2564 = 7.0940 < 9.2221] w=0.9088 to align # Constraint # added constraint: constraint((T0292)K22.CB, (T0292)V33.CB) [> 3.8354 = 6.3923 < 8.3100] w=0.9088 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)I263.CB) [> 4.3025 = 7.1708 < 9.3220] w=0.9088 to align # Constraint # added constraint: constraint((T0292)H126.CB, (T0292)V260.CB) [> 3.6195 = 6.0325 < 7.8423] w=0.9082 to align # Constraint # added constraint: constraint((T0292)L56.CB, (T0292)V135.CB) [> 3.8568 = 6.4280 < 8.3564] w=0.9079 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)E124.CB) [> 4.1755 = 6.9591 < 9.0469] w=0.9070 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)L155.CB) [> 4.4853 = 7.4755 < 9.7182] w=0.9070 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)P142.CB) [> 3.6071 = 6.0119 < 7.8155] w=0.9027 to align # Constraint # added constraint: constraint((T0292)L60.CB, (T0292)C125.CB) [> 4.1523 = 6.9205 < 8.9966] w=0.9027 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)L80.CB) [> 2.7885 = 4.6475 < 6.0417] w=0.9018 to align # Constraint # added constraint: constraint((T0292)E36.CB, (T0292)L80.CB) [> 4.3647 = 7.2746 < 9.4569] w=0.8966 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)C87.CB) [> 4.0769 = 6.7948 < 8.8333] w=0.8957 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)E36.CB) [> 4.5454 = 7.5756 < 9.8483] w=0.8905 to align # Constraint # added constraint: constraint((T0292)V95.CB, (T0292)L147.CB) [> 3.7903 = 6.3172 < 8.2124] w=0.8905 to align # Constraint # added constraint: constraint((T0292)L112.CB, (T0292)I269.CB) [> 3.9214 = 6.5356 < 8.4963] w=0.8905 to align # Constraint # added constraint: constraint((T0292)Y179.CB, (T0292)F214.CB) [> 3.6678 = 6.1130 < 7.9469] w=0.8905 to align # Constraint # added constraint: constraint((T0292)C202.CB, (T0292)L250.CB) [> 4.3698 = 7.2829 < 9.4678] w=0.8905 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)L106.CB) [> 4.1378 = 6.8963 < 8.9652] w=0.8905 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)K35.CB) [> 4.0527 = 6.7544 < 8.7808] w=0.8905 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)I226.CB) [> 3.3489 = 5.5816 < 7.2561] w=0.8845 to align # Constraint # added constraint: constraint((T0292)F214.CB, (T0292)K225.CB) [> 2.8449 = 4.7415 < 6.1639] w=0.8845 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)V260.CB) [> 3.0623 = 5.1038 < 6.6349] w=0.8838 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)E206.CB) [> 4.0488 = 6.7481 < 8.7725] w=0.8784 to align # Constraint # added constraint: constraint((T0292)T116.CB, (T0292)I269.CB) [> 3.4994 = 5.8324 < 7.5821] w=0.8784 to align # Constraint # added constraint: constraint((T0292)L9.CB, (T0292)K22.CB) [> 2.9008 = 4.8347 < 6.2851] w=0.8784 to align # Constraint # added constraint: constraint((T0292)R71.CB, (T0292)L80.CB) [> 4.1951 = 6.9918 < 9.0894] w=0.8784 to align # Constraint # added constraint: constraint((T0292)L106.CB, (T0292)L207.CB) [> 3.0895 = 5.1492 < 6.6939] w=0.8723 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)E36.CB) [> 3.5176 = 5.8626 < 7.6214] w=0.8723 to align # Constraint # added constraint: constraint((T0292)W34.CB, (T0292)M84.CB) [> 4.3983 = 7.3305 < 9.5296] w=0.8723 to align # Constraint # added constraint: constraint((T0292)K22.CB, (T0292)I31.CB) [> 3.9555 = 6.5926 < 8.5703] w=0.8723 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)V153.CB) [> 4.2428 = 7.0713 < 9.1927] w=0.8723 to align # Constraint # added constraint: constraint((T0292)I12.CB, (T0292)Q21.CB) [> 3.8034 = 6.3390 < 8.2407] w=0.8723 to align # Constraint # added constraint: constraint((T0292)I12.CB, (T0292)K22.CB) [> 3.2710 = 5.4517 < 7.0872] w=0.8723 to align # Constraint # added constraint: constraint((T0292)Y10.CB, (T0292)Q21.CB) [> 3.9679 = 6.6132 < 8.5971] w=0.8723 to align # Constraint # added constraint: constraint((T0292)T11.CB, (T0292)Q21.CB) [> 3.3216 = 5.5359 < 7.1967] w=0.8723 to align # Constraint # added constraint: constraint((T0292)D5.CB, (T0292)K26.CB) [> 3.4219 = 5.7031 < 7.4140] w=0.8662 to align # Constraint # added constraint: constraint((T0292)L9.CB, (T0292)Q21.CB) [> 3.5582 = 5.9303 < 7.7094] w=0.8662 to align # Constraint # added constraint: constraint((T0292)Q117.CB, (T0292)N152.CB) [> 4.0552 = 6.7586 < 8.7862] w=0.8601 to align # Constraint # added constraint: constraint((T0292)L60.CB, (T0292)R128.CB) [> 4.0518 = 6.7530 < 8.7789] w=0.8601 to align # Constraint # added constraint: constraint((T0292)L112.CB, (T0292)L268.CB) [> 3.9669 = 6.6115 < 8.5950] w=0.8601 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)L37.CB) [> 3.4807 = 5.8012 < 7.5415] w=0.8592 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)L37.CB) [> 3.2102 = 5.3503 < 6.9554] w=0.8592 to align # Constraint # added constraint: constraint((T0292)D70.CB, (T0292)I82.CB) [> 4.6064 = 7.6774 < 9.9806] w=0.8592 to align # Constraint # added constraint: constraint((T0292)L242.CB, (T0292)L268.CB) [> 3.3037 = 5.5061 < 7.1579] w=0.8541 to align # Constraint # added constraint: constraint((T0292)Y179.CB, (T0292)P212.CB) [> 3.0463 = 5.0771 < 6.6003] w=0.8540 to align # Constraint # added constraint: constraint((T0292)M186.CB, (T0292)A223.CB) [> 3.2284 = 5.3807 < 6.9949] w=0.8540 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)L207.CB) [> 4.3181 = 7.1969 < 9.3560] w=0.8540 to align # Constraint # added constraint: constraint((T0292)G90.CA, (T0292)L147.CB) [> 3.2630 = 5.4383 < 7.0698] w=0.8480 to align # Constraint # added constraint: constraint((T0292)V54.CB, (T0292)Y68.CB) [> 4.3509 = 7.2515 < 9.4269] w=0.8419 to align # Constraint # added constraint: constraint((T0292)Y6.CB, (T0292)L32.CB) [> 4.2620 = 7.1033 < 9.2343] w=0.8419 to align # Constraint # added constraint: constraint((T0292)I72.CB, (T0292)V83.CB) [> 4.4972 = 7.4953 < 9.7440] w=0.8407 to align # Constraint # added constraint: constraint((T0292)K22.CB, (T0292)L32.CB) [> 4.5683 = 7.6138 < 9.8979] w=0.8358 to align # Constraint # added constraint: constraint((T0292)G89.CA, (T0292)L147.CB) [> 2.8906 = 4.8176 < 6.2629] w=0.8349 to align # Constraint # added constraint: constraint((T0292)G89.CA, (T0292)F146.CB) [> 4.0596 = 6.7660 < 8.7957] w=0.8349 to align # Constraint # added constraint: constraint((T0292)E108.CB, (T0292)S239.CB) [> 3.5838 = 5.9730 < 7.7649] w=0.8288 to align # Constraint # added constraint: constraint((T0292)E241.CB, (T0292)P267.CB) [> 3.1692 = 5.2821 < 6.8667] w=0.8236 to align # Constraint # added constraint: constraint((T0292)E108.CB, (T0292)L242.CB) [> 3.7372 = 6.2287 < 8.0974] w=0.8228 to align # Constraint # added constraint: constraint((T0292)L118.CB, (T0292)L140.CB) [> 4.4657 = 7.4427 < 9.6756] w=0.8228 to align # Constraint # added constraint: constraint((T0292)R19.CB, (T0292)K35.CB) [> 4.4323 = 7.3871 < 9.6032] w=0.8176 to align # Constraint # added constraint: constraint((T0292)E53.CB, (T0292)G159.CA) [> 2.9567 = 4.9277 < 6.4061] w=0.8176 to align # Constraint # added constraint: constraint((T0292)Y179.CB, (T0292)L222.CB) [> 3.9570 = 6.5950 < 8.5735] w=0.8176 to align # Constraint # added constraint: constraint((T0292)K22.CB, (T0292)W34.CB) [> 4.6221 = 7.7035 < 10.0146] w=0.8176 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)C125.CB) [> 4.3184 = 7.1974 < 9.3566] w=0.8157 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)S199.CB) [> 4.6221 = 7.7036 < 10.0147] w=0.8157 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)T177.CB) [> 3.4567 = 5.7612 < 7.4896] w=0.8115 to align # Constraint # added constraint: constraint((T0292)E244.CB, (T0292)N266.CB) [> 4.5884 = 7.6473 < 9.9415] w=0.8115 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)I82.CB) [> 4.3331 = 7.2218 < 9.3883] w=0.8045 to align # Constraint # added constraint: constraint((T0292)L204.CB, (T0292)L242.CB) [> 4.3980 = 7.3299 < 9.5289] w=0.8045 to align # Constraint # added constraint: constraint((T0292)F146.CB, (T0292)L155.CB) [> 4.6118 = 7.6863 < 9.9922] w=0.7994 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)F146.CB) [> 4.3970 = 7.3283 < 9.5268] w=0.7993 to align # Constraint # added constraint: constraint((T0292)R248.CB, (T0292)N266.CB) [> 4.4692 = 7.4486 < 9.6832] w=0.7993 to align # Constraint # added constraint: constraint((T0292)I245.CB, (T0292)P258.CB) [> 4.4946 = 7.4910 < 9.7383] w=0.7993 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)D148.CB) [> 3.1904 = 5.3173 < 6.9125] w=0.7984 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)D254.CB) [> 4.2571 = 7.0952 < 9.2238] w=0.7975 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)L50.CB) [> 3.6938 = 6.1563 < 8.0032] w=0.7923 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)D38.CB) [> 3.7768 = 6.2947 < 8.1831] w=0.7863 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)C87.CB) [> 4.3642 = 7.2736 < 9.4557] w=0.7863 to align # Constraint # added constraint: constraint((T0292)N192.CB, (T0292)D254.CB) [> 3.8389 = 6.3981 < 8.3176] w=0.7844 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)S199.CB) [> 4.4067 = 7.3444 < 9.5478] w=0.7811 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)F158.CB) [> 3.4896 = 5.8159 < 7.5607] w=0.7811 to align # Constraint # added constraint: constraint((T0292)G89.CA, (T0292)D148.CB) [> 3.8877 = 6.4795 < 8.4233] w=0.7802 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)Y191.CB) [> 4.1673 = 6.9456 < 9.0293] w=0.7802 to align # Constraint # added constraint: constraint((T0292)L50.CB, (T0292)L80.CB) [> 3.7934 = 6.3224 < 8.2191] w=0.7802 to align # Constraint # added constraint: constraint((T0292)S195.CB, (T0292)D254.CB) [> 4.3522 = 7.2537 < 9.4298] w=0.7793 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)L155.CB) [> 4.4682 = 7.4470 < 9.6811] w=0.7793 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)S259.CB) [> 4.1484 = 6.9140 < 8.9881] w=0.7732 to align # Constraint # added constraint: constraint((T0292)L122.CB, (T0292)L140.CB) [> 4.4974 = 7.4956 < 9.7443] w=0.7662 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)S195.CB) [> 4.5430 = 7.5716 < 9.8431] w=0.7629 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)V145.CB) [> 4.4986 = 7.4977 < 9.7470] w=0.7628 to align # Constraint # added constraint: constraint((T0292)E88.CB, (T0292)D148.CB) [> 3.9172 = 6.5287 < 8.4873] w=0.7619 to align # Constraint # added constraint: constraint((T0292)V145.CB, (T0292)L203.CB) [> 4.4665 = 7.4443 < 9.6775] w=0.7610 to align # Constraint # added constraint: constraint((T0292)K123.CB, (T0292)L264.CB) [> 3.9093 = 6.5155 < 8.4701] w=0.7610 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)V260.CB) [> 3.9760 = 6.6267 < 8.6147] w=0.7610 to align # Constraint # added constraint: constraint((T0292)T116.CB, (T0292)L264.CB) [> 4.1880 = 6.9801 < 9.0741] w=0.7610 to align # Constraint # added constraint: constraint((T0292)L56.CB, (T0292)F158.CB) [> 3.1120 = 5.1867 < 6.7427] w=0.7498 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)R162.CB) [> 3.9210 = 6.5351 < 8.4956] w=0.7446 to align # Constraint # added constraint: constraint((T0292)P178.CB, (T0292)L222.CB) [> 3.2477 = 5.4129 < 7.0367] w=0.7446 to align # Constraint # added constraint: constraint((T0292)P63.CB, (T0292)N152.CB) [> 4.3777 = 7.2961 < 9.4850] w=0.7385 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)L210.CB) [> 4.0197 = 6.6995 < 8.7093] w=0.7325 to align # Constraint # added constraint: constraint((T0292)A121.CB, (T0292)V153.CB) [> 4.3976 = 7.3294 < 9.5282] w=0.7316 to align # Constraint # added constraint: constraint((T0292)E88.CB, (T0292)G149.CA) [> 3.4787 = 5.7978 < 7.5372] w=0.7316 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)R227.CB) [> 3.3615 = 5.6025 < 7.2833] w=0.7315 to align # Constraint # added constraint: constraint((T0292)E53.CB, (T0292)F158.CB) [> 3.1343 = 5.2239 < 6.7910] w=0.7315 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)G159.CA) [> 4.0636 = 6.7727 < 8.8045] w=0.7315 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)A161.CB) [> 3.6088 = 6.0146 < 7.8190] w=0.7263 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)A161.CB) [> 3.3293 = 5.5488 < 7.2134] w=0.7263 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)W198.CB) [> 4.5970 = 7.6616 < 9.9601] w=0.7203 to align # Constraint # added constraint: constraint((T0292)L9.CB, (T0292)R24.CB) [> 3.9296 = 6.5494 < 8.5142] w=0.7142 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)L250.CB) [> 4.4764 = 7.4607 < 9.6989] w=0.7133 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)Y81.CB) [> 4.5279 = 7.5465 < 9.8104] w=0.7133 to align # Constraint # added constraint: constraint((T0292)I23.CB, (T0292)V83.CB) [> 4.3803 = 7.3006 < 9.4908] w=0.7081 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)R162.CB) [> 3.3050 = 5.5083 < 7.1608] w=0.7081 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)A161.CB) [> 3.9602 = 6.6004 < 8.5805] w=0.7081 to align # Constraint # added constraint: constraint((T0292)H62.CB, (T0292)L120.CB) [> 4.5667 = 7.6112 < 9.8946] w=0.7063 to align # Constraint # added constraint: constraint((T0292)Y6.CB, (T0292)V83.CB) [> 4.3269 = 7.2115 < 9.3749] w=0.7011 to align # Constraint # added constraint: constraint((T0292)L106.CB, (T0292)C208.CB) [> 4.1312 = 6.8854 < 8.9510] w=0.6951 to align # Constraint # added constraint: constraint((T0292)L200.CB, (T0292)I263.CB) [> 4.4448 = 7.4080 < 9.6304] w=0.6932 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)Y180.CB) [> 4.5648 = 7.6079 < 9.8903] w=0.6899 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)Y179.CB) [> 4.4358 = 7.3930 < 9.6109] w=0.6899 to align # Constraint # added constraint: constraint((T0292)E85.CB, (T0292)K154.CB) [> 4.4032 = 7.3387 < 9.5403] w=0.6899 to align # Constraint # added constraint: constraint((T0292)T11.CB, (T0292)K22.CB) [> 4.6405 = 7.7341 < 10.0544] w=0.6899 to align # Constraint # added constraint: constraint((T0292)N64.CB, (T0292)N152.CB) [> 4.2193 = 7.0321 < 9.1418] w=0.6838 to align # Constraint # added constraint: constraint((T0292)E36.CB, (T0292)T79.CB) [> 3.3999 = 5.6666 < 7.3665] w=0.6788 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)L203.CB) [> 4.4568 = 7.4279 < 9.6563] w=0.6768 to align # Constraint # added constraint: constraint((T0292)M186.CB, (T0292)I226.CB) [> 3.6928 = 6.1547 < 8.0011] w=0.6716 to align # Constraint # added constraint: constraint((T0292)E108.CB, (T0292)C208.CB) [> 4.0575 = 6.7626 < 8.7913] w=0.6716 to align # Constraint # added constraint: constraint((T0292)E184.CB, (T0292)K194.CB) [> 4.4903 = 7.4839 < 9.7290] w=0.6716 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)I82.CB) [> 4.3500 = 7.2500 < 9.4250] w=0.6708 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)W198.CB) [> 4.6241 = 7.7067 < 10.0188] w=0.6698 to align # Constraint # added constraint: constraint((T0292)L60.CB, (T0292)V135.CB) [> 4.1767 = 6.9612 < 9.0495] w=0.6698 to align # Constraint # added constraint: constraint((T0292)V8.CB, (T0292)Q21.CB) [> 3.1506 = 5.2510 < 6.8263] w=0.6655 to align # Constraint # added constraint: constraint((T0292)L56.CB, (T0292)A161.CB) [> 3.1426 = 5.2377 < 6.8090] w=0.6586 to align # Constraint # added constraint: constraint((T0292)V111.CB, (T0292)L242.CB) [> 4.3673 = 7.2788 < 9.4624] w=0.6568 to align # Constraint # added constraint: constraint((T0292)E59.CB, (T0292)R128.CB) [> 3.9607 = 6.6012 < 8.5815] w=0.6567 to align # Constraint # added constraint: constraint((T0292)F231.CB, (T0292)L250.CB) [> 3.5208 = 5.8681 < 7.6285] w=0.6464 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)T79.CB) [> 4.0002 = 6.6670 < 8.6671] w=0.6458 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)I269.CB) [> 4.2742 = 7.1237 < 9.2608] w=0.6446 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)A161.CB) [> 3.4102 = 5.6836 < 7.3887] w=0.6403 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)L160.CB) [> 2.7689 = 4.6147 < 5.9992] w=0.6403 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)I163.CB) [> 3.5210 = 5.8683 < 7.6288] w=0.6342 to align # Constraint # added constraint: constraint((T0292)D196.CB, (T0292)V260.CB) [> 4.4998 = 7.4997 < 9.7496] w=0.6333 to align # Constraint # added constraint: constraint((T0292)E53.CB, (T0292)I82.CB) [> 4.4728 = 7.4547 < 9.6911] w=0.6282 to align # Constraint # added constraint: constraint((T0292)M186.CB, (T0292)R227.CB) [> 3.3839 = 5.6399 < 7.3319] w=0.6099 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)I226.CB) [> 4.0413 = 6.7356 < 8.7563] w=0.6038 to align # Constraint # added constraint: constraint((T0292)W198.CB, (T0292)D254.CB) [> 4.6358 = 7.7263 < 10.0442] w=0.6020 to align # Constraint # added constraint: constraint((T0292)S52.CB, (T0292)G159.CA) [> 3.9447 = 6.5744 < 8.5468] w=0.5917 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)D38.CB) [> 3.6946 = 6.1577 < 8.0051] w=0.5856 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)L160.CB) [> 4.4195 = 7.3658 < 9.5756] w=0.5856 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)A161.CB) [> 4.3112 = 7.1853 < 9.3409] w=0.5804 to align # Constraint # added constraint: constraint((T0292)E193.CB, (T0292)V260.CB) [> 4.4227 = 7.3712 < 9.5825] w=0.5786 to align # Constraint # added constraint: constraint((T0292)Y191.CB, (T0292)D254.CB) [> 4.0929 = 6.8216 < 8.8680] w=0.5656 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)T177.CB) [> 3.8344 = 6.3906 < 8.3078] w=0.5613 to align # Constraint # added constraint: constraint((T0292)V8.CB, (T0292)W34.CB) [> 4.1963 = 6.9938 < 9.0920] w=0.5561 to align # Constraint # added constraint: constraint((T0292)T215.CB, (T0292)K225.CB) [> 4.4333 = 7.3888 < 9.6054] w=0.5482 to align # Constraint # added constraint: constraint((T0292)K35.CB, (T0292)V83.CB) [> 4.6866 = 7.8110 < 10.1543] w=0.5439 to align # Constraint # added constraint: constraint((T0292)D38.CB, (T0292)T79.CB) [> 3.6058 = 6.0096 < 7.8125] w=0.5424 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)S199.CB) [> 4.6356 = 7.7260 < 10.0438] w=0.5421 to align # Constraint # added constraint: constraint((T0292)L160.CB, (T0292)G176.CA) [> 3.5558 = 5.9263 < 7.7042] w=0.5309 to align # Constraint # added constraint: constraint((T0292)F110.CB, (T0292)L207.CB) [> 4.6126 = 7.6877 < 9.9939] w=0.5309 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)G176.CA) [> 3.0360 = 5.0600 < 6.5780] w=0.5248 to align # Constraint # added constraint: constraint((T0292)R25.CB, (T0292)V83.CB) [> 4.4586 = 7.4310 < 9.6604] w=0.5248 to align # Constraint # added constraint: constraint((T0292)I234.CB, (T0292)N243.CB) [> 3.3899 = 5.6498 < 7.3447] w=0.5187 to align # Constraint # added constraint: constraint((T0292)R227.CB, (T0292)L252.CB) [> 4.5016 = 7.5027 < 9.7535] w=0.5187 to align # Constraint # added constraint: constraint((T0292)G229.CA, (T0292)L252.CB) [> 3.6442 = 6.0737 < 7.8958] w=0.5187 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)G176.CA) [> 3.6149 = 6.0248 < 7.8323] w=0.5126 to align # Constraint # added constraint: constraint((T0292)A93.CB, (T0292)V145.CB) [> 4.6639 = 7.7732 < 10.1052] w=0.5126 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)V66.CB) [> 4.3928 = 7.3214 < 9.5178] w=0.5108 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)F158.CB) [> 4.2898 = 7.1497 < 9.2945] w=0.5056 to align # Constraint # added constraint: constraint((T0292)P63.CB, (T0292)K154.CB) [> 4.6382 = 7.7302 < 10.0493] w=0.5056 to align # Constraint # added constraint: constraint((T0292)A209.CB, (T0292)I234.CB) [> 4.0440 = 6.7399 < 8.7619] w=0.5030 to align # Constraint # added constraint: constraint((T0292)A209.CB, (T0292)Y238.CB) [> 4.3282 = 7.2137 < 9.3778] w=0.5005 to align # Constraint # added constraint: constraint((T0292)M49.CB, (T0292)G159.CA) [> 3.3759 = 5.6266 < 7.3145] w=0.4944 to align # Constraint # added constraint: constraint((T0292)L92.CB, (T0292)L203.CB) [> 4.4576 = 7.4293 < 9.6581] w=0.4874 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)L164.CB) [> 3.4365 = 5.7274 < 7.4457] w=0.4822 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)L207.CB) [> 4.4672 = 7.4454 < 9.6790] w=0.4762 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)I226.CB) [> 4.5770 = 7.6283 < 9.9167] w=0.4761 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)I245.CB) [> 4.6002 = 7.6669 < 9.9670] w=0.4743 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)R67.CB) [> 4.4635 = 7.4392 < 9.6709] w=0.4743 to align # Constraint # added constraint: constraint((T0292)P213.CB, (T0292)F231.CB) [> 2.7346 = 4.5576 < 5.9249] w=0.4579 to align # Constraint # added constraint: constraint((T0292)Y39.CB, (T0292)T79.CB) [> 3.8998 = 6.4996 < 8.4495] w=0.4573 to align # Constraint # added constraint: constraint((T0292)A143.CB, (T0292)D157.CB) [> 4.6957 = 7.8262 < 10.1741] w=0.4561 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)C202.CB) [> 4.5515 = 7.5859 < 9.8616] w=0.4561 to align # Constraint # added constraint: constraint((T0292)V54.CB, (T0292)L80.CB) [> 4.4548 = 7.4246 < 9.6520] w=0.4527 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)Y191.CB) [> 4.1738 = 6.9564 < 9.0433] w=0.4500 to align # Constraint # added constraint: constraint((T0292)P178.CB, (T0292)A223.CB) [> 3.8682 = 6.4470 < 8.3811] w=0.4457 to align # Constraint # added constraint: constraint((T0292)Y39.CB, (T0292)T78.CB) [> 3.5014 = 5.8357 < 7.5864] w=0.4451 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)G149.CA) [> 4.4468 = 7.4113 < 9.6347] w=0.4439 to align # Constraint # added constraint: constraint((T0292)L160.CB, (T0292)V175.CB) [> 3.1209 = 5.2015 < 6.7619] w=0.4397 to align # Constraint # added constraint: constraint((T0292)R248.CB, (T0292)E262.CB) [> 4.5618 = 7.6030 < 9.8839] w=0.4397 to align # Constraint # added constraint: constraint((T0292)D70.CB, (T0292)Y81.CB) [> 4.5519 = 7.5866 < 9.8625] w=0.4397 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)A223.CB) [> 4.3633 = 7.2722 < 9.4539] w=0.4396 to align # Constraint # added constraint: constraint((T0292)M49.CB, (T0292)L160.CB) [> 4.0847 = 6.8077 < 8.8501] w=0.4336 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)F231.CB) [> 4.4552 = 7.4254 < 9.6530] w=0.4257 to align # Constraint # added constraint: constraint((T0292)V95.CB, (T0292)L106.CB) [> 4.3889 = 7.3149 < 9.5094] w=0.4205 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)L164.CB) [> 4.3060 = 7.1767 < 9.3297] w=0.4074 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)V175.CB) [> 3.4075 = 5.6792 < 7.3829] w=0.3849 to align # Constraint # added constraint: constraint((T0292)I234.CB, (T0292)I246.CB) [> 4.1912 = 6.9854 < 9.0810] w=0.3849 to align # Constraint # added constraint: constraint((T0292)V175.CB, (T0292)Q185.CB) [> 4.1716 = 6.9527 < 9.0385] w=0.3849 to align # Constraint # added constraint: constraint((T0292)P63.CB, (T0292)A121.CB) [> 4.6727 = 7.7879 < 10.1242] w=0.3840 to align # Constraint # added constraint: constraint((T0292)E36.CB, (T0292)I82.CB) [> 4.6959 = 7.8265 < 10.1744] w=0.3831 to align # Constraint # added constraint: constraint((T0292)A3.CB, (T0292)Y81.CB) [> 4.0776 = 6.7960 < 8.8348] w=0.3667 to align # Constraint # added constraint: constraint((T0292)C208.CB, (T0292)I246.CB) [> 4.5362 = 7.5604 < 9.8285] w=0.3649 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)E85.CB) [> 4.5985 = 7.6641 < 9.9634] w=0.3597 to align # Constraint # added constraint: constraint((T0292)G176.CA, (T0292)Q185.CB) [> 4.4999 = 7.4999 < 9.7499] w=0.3485 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)V175.CB) [> 4.3762 = 7.2936 < 9.4817] w=0.3485 to align # Constraint # added constraint: constraint((T0292)D139.CB, (T0292)F158.CB) [> 4.5132 = 7.5220 < 9.7786] w=0.3466 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)Q185.CB) [> 4.4295 = 7.3825 < 9.5973] w=0.3414 to align # Constraint # added constraint: constraint((T0292)R25.CB, (T0292)Y69.CB) [> 4.4385 = 7.3975 < 9.6167] w=0.3405 to align # Constraint # added constraint: constraint((T0292)A3.CB, (T0292)I72.CB) [> 3.8664 = 6.4440 < 8.3772] w=0.3363 to align # Constraint # added constraint: constraint((T0292)L32.CB, (T0292)D70.CB) [> 4.6622 = 7.7704 < 10.1015] w=0.3302 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)P213.CB) [> 4.6376 = 7.7293 < 10.0481] w=0.3284 to align # Constraint # added constraint: constraint((T0292)F174.CB, (T0292)Q185.CB) [> 3.6342 = 6.0570 < 7.8741] w=0.3284 to align # Constraint # added constraint: constraint((T0292)L9.CB, (T0292)I31.CB) [> 4.5427 = 7.5713 < 9.8426] w=0.3232 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)I163.CB) [> 4.5830 = 7.6383 < 9.9297] w=0.3223 to align # Constraint # added constraint: constraint((T0292)L56.CB, (T0292)G159.CA) [> 4.2582 = 7.0970 < 9.2261] w=0.3223 to align # Constraint # added constraint: constraint((T0292)Y105.CB, (T0292)L210.CB) [> 2.8826 = 4.8043 < 6.2456] w=0.3195 to align # Constraint # added constraint: constraint((T0292)F110.CB, (T0292)Q151.CB) [> 4.0765 = 6.7941 < 8.8324] w=0.3110 to align # Constraint # added constraint: constraint((T0292)H126.CB, (T0292)E261.CB) [> 4.6843 = 7.8071 < 10.1492] w=0.3049 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)A223.CB) [> 4.0120 = 6.6867 < 8.6927] w=0.3049 to align # Constraint # added constraint: constraint((T0292)L136.CB, (T0292)A171.CB) [> 4.2904 = 7.1506 < 9.2958] w=0.2998 to align # Constraint # added constraint: constraint((T0292)I245.CB, (T0292)P267.CB) [> 4.6365 = 7.7276 < 10.0459] w=0.2937 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)L147.CB) [> 4.5111 = 7.5185 < 9.7741] w=0.2928 to align # Constraint # added constraint: constraint((T0292)L200.CB, (T0292)V260.CB) [> 4.5837 = 7.6394 < 9.9313] w=0.2919 to align # Constraint # added constraint: constraint((T0292)F231.CB, (T0292)T247.CB) [> 4.1464 = 6.9107 < 8.9839] w=0.2876 to align # Constraint # added constraint: constraint((T0292)R113.CB, (T0292)V153.CB) [> 4.5637 = 7.6062 < 9.8880] w=0.2867 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)K35.CB) [> 4.2416 = 7.0694 < 9.1902] w=0.2867 to align # Constraint # added constraint: constraint((T0292)I72.CB, (T0292)I82.CB) [> 4.6883 = 7.8137 < 10.1579] w=0.2806 to align # Constraint # added constraint: constraint((T0292)M186.CB, (T0292)L222.CB) [> 3.9011 = 6.5018 < 8.4523] w=0.2806 to align # Constraint # added constraint: constraint((T0292)V33.CB, (T0292)V66.CB) [> 4.6346 = 7.7244 < 10.0417] w=0.2737 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)L50.CB) [> 4.3418 = 7.2363 < 9.4072] w=0.2694 to align # Constraint # added constraint: constraint((T0292)N187.CB, (T0292)A223.CB) [> 4.4002 = 7.3337 < 9.5338] w=0.2624 to align # Constraint # added constraint: constraint((T0292)I31.CB, (T0292)E88.CB) [> 4.2543 = 7.0904 < 9.2175] w=0.2554 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)M84.CB) [> 4.6398 = 7.7330 < 10.0529] w=0.2554 to align # Constraint # added constraint: constraint((T0292)M84.CB, (T0292)G156.CA) [> 4.5729 = 7.6215 < 9.9080] w=0.2520 to align # Constraint # added constraint: constraint((T0292)Q21.CB, (T0292)K35.CB) [> 4.6316 = 7.7194 < 10.0352] w=0.2502 to align # Constraint # added constraint: constraint((T0292)K30.CB, (T0292)Y86.CB) [> 4.5069 = 7.5115 < 9.7650] w=0.2493 to align # Constraint # added constraint: constraint((T0292)E36.CB, (T0292)N77.CB) [> 3.4642 = 5.7737 < 7.5058] w=0.2482 to align # Constraint # added constraint: constraint((T0292)V8.CB, (T0292)R24.CB) [> 3.3531 = 5.5885 < 7.2650] w=0.2432 to align # Constraint # added constraint: constraint((T0292)I23.CB, (T0292)Y86.CB) [> 4.7112 = 7.8519 < 10.2075] w=0.2372 to align # Constraint # added constraint: constraint((T0292)E53.CB, (T0292)D157.CB) [> 4.5613 = 7.6022 < 9.8828] w=0.2372 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)I234.CB) [> 4.1609 = 6.9347 < 9.0152] w=0.2354 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)D157.CB) [> 4.3614 = 7.2691 < 9.4498] w=0.2320 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)F158.CB) [> 4.0689 = 6.7815 < 8.8159] w=0.2319 to align # Constraint # added constraint: constraint((T0292)V66.CB, (T0292)D157.CB) [> 4.4682 = 7.4470 < 9.6811] w=0.2319 to align # Constraint # added constraint: constraint((T0292)K30.CB, (T0292)Y69.CB) [> 4.5073 = 7.5121 < 9.7658] w=0.2311 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)Q151.CB) [> 4.1253 = 6.8755 < 8.9381] w=0.2311 to align # Constraint # added constraint: constraint((T0292)Y10.CB, (T0292)I23.CB) [> 4.5268 = 7.5447 < 9.8082] w=0.2189 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)G159.CA) [> 3.9156 = 6.5259 < 8.4837] w=0.2137 to align # Constraint # added constraint: constraint((T0292)T134.CB, (T0292)I163.CB) [> 3.5699 = 5.9499 < 7.7348] w=0.2134 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)S199.CB) [> 4.6700 = 7.7833 < 10.1183] w=0.2007 to align # Constraint # added constraint: constraint((T0292)F174.CB, (T0292)M186.CB) [> 4.3127 = 7.1878 < 9.3441] w=0.2007 to align # Constraint # added constraint: constraint((T0292)L57.CB, (T0292)M84.CB) [> 4.5049 = 7.5082 < 9.7606] w=0.2007 to align # Constraint # added constraint: constraint((T0292)V51.CB, (T0292)L80.CB) [> 4.4317 = 7.3862 < 9.6020] w=0.1929 to align # Constraint # added constraint: constraint((T0292)L140.CB, (T0292)C202.CB) [> 4.6069 = 7.6783 < 9.9817] w=0.1843 to align # Constraint # added constraint: constraint((T0292)Y105.CB, (T0292)A209.CB) [> 3.7357 = 6.2261 < 8.0939] w=0.1830 to align # Constraint # added constraint: constraint((T0292)T134.CB, (T0292)L164.CB) [> 3.1920 = 5.3200 < 6.9161] w=0.1830 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)E206.CB) [> 4.5638 = 7.6063 < 9.8882] w=0.1824 to align # Constraint # added constraint: constraint((T0292)M115.CB, (T0292)I263.CB) [> 4.4143 = 7.3572 < 9.5644] w=0.1824 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)G159.CA) [> 4.1465 = 6.9108 < 8.9841] w=0.1824 to align # Constraint # added constraint: constraint((T0292)C87.CB, (T0292)N152.CB) [> 4.5560 = 7.5934 < 9.8714] w=0.1824 to align # Constraint # added constraint: constraint((T0292)A143.CB, (T0292)T177.CB) [> 4.6691 = 7.7818 < 10.1163] w=0.1703 to align # Constraint # added constraint: constraint((T0292)P178.CB, (T0292)I226.CB) [> 4.3310 = 7.2183 < 9.3838] w=0.1702 to align # Constraint # added constraint: constraint((T0292)L50.CB, (T0292)I82.CB) [> 4.2562 = 7.0937 < 9.2218] w=0.1702 to align # Constraint # added constraint: constraint((T0292)Y179.CB, (T0292)E206.CB) [> 4.6109 = 7.6848 < 9.9902] w=0.1660 to align # Constraint # added constraint: constraint((T0292)P183.CB, (T0292)D254.CB) [> 4.6876 = 7.8126 < 10.1564] w=0.1642 to align # Constraint # added constraint: constraint((T0292)T97.CB, (T0292)L210.CB) [> 3.6859 = 6.1432 < 7.9861] w=0.1642 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)G159.CA) [> 3.4843 = 5.8072 < 7.5493] w=0.1590 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)P235.CB) [> 3.8703 = 6.4505 < 8.3856] w=0.1564 to align # Constraint # added constraint: constraint((T0292)M189.CB, (T0292)D254.CB) [> 4.6602 = 7.7670 < 10.0971] w=0.1564 to align # Constraint # added constraint: constraint((T0292)N55.CB, (T0292)I163.CB) [> 4.4141 = 7.3569 < 9.5640] w=0.1460 to align # Constraint # added constraint: constraint((T0292)L112.CB, (T0292)L270.CB) [> 4.2275 = 7.0458 < 9.1596] w=0.1460 to align # Constraint # added constraint: constraint((T0292)H137.CB, (T0292)G156.CA) [> 4.6761 = 7.7936 < 10.1316] w=0.1459 to align # Constraint # added constraint: constraint((T0292)K30.CB, (T0292)E85.CB) [> 4.1860 = 6.9766 < 9.0696] w=0.1459 to align # Constraint # added constraint: constraint((T0292)K141.CB, (T0292)G176.CA) [> 4.3876 = 7.3126 < 9.5064] w=0.1459 to align # Constraint # added constraint: constraint((T0292)I12.CB, (T0292)Y86.CB) [> 4.6833 = 7.8055 < 10.1472] w=0.1459 to align # Constraint # added constraint: constraint((T0292)Y39.CB, (T0292)I73.CB) [> 4.2964 = 7.1607 < 9.3089] w=0.1405 to align # Constraint # added constraint: constraint((T0292)A209.CB, (T0292)R237.CB) [> 3.4677 = 5.7795 < 7.5133] w=0.1364 to align # Constraint # added constraint: constraint((T0292)T134.CB, (T0292)N165.CB) [> 3.3335 = 5.5558 < 7.2226] w=0.1344 to align # Constraint # added constraint: constraint((T0292)V51.CB, (T0292)R71.CB) [> 4.1860 = 6.9766 < 9.0696] w=0.1321 to align # Constraint # added constraint: constraint((T0292)R19.CB, (T0292)L37.CB) [> 4.5955 = 7.6592 < 9.9569] w=0.1277 to align # Constraint # added constraint: constraint((T0292)I31.CB, (T0292)E85.CB) [> 4.5410 = 7.5684 < 9.8389] w=0.1277 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)Y180.CB) [> 4.6713 = 7.7855 < 10.1212] w=0.1277 to align # Constraint # added constraint: constraint((T0292)I197.CB, (T0292)D254.CB) [> 4.6239 = 7.7066 < 10.0185] w=0.1095 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)F158.CB) [> 4.3894 = 7.3157 < 9.5104] w=0.1095 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)A143.CB) [> 4.3180 = 7.1967 < 9.3557] w=0.1043 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)D157.CB) [> 3.9797 = 6.6328 < 8.6226] w=0.1043 to align # Constraint # added constraint: constraint((T0292)A173.CB, (T0292)R188.CB) [> 3.7372 = 6.2287 < 8.0973] w=0.1034 to align # Constraint # added constraint: constraint((T0292)P178.CB, (T0292)F214.CB) [> 4.5346 = 7.5576 < 9.8249] w=0.1033 to align # Constraint # added constraint: constraint((T0292)G89.CA, (T0292)K150.CB) [> 3.9549 = 6.5914 < 8.5689] w=0.1033 to align # Constraint # added constraint: constraint((T0292)P213.CB, (T0292)I226.CB) [> 4.4399 = 7.3998 < 9.6198] w=0.0973 to align # Constraint # added constraint: constraint((T0292)C208.CB, (T0292)S239.CB) [> 4.1813 = 6.9688 < 9.0595] w=0.0973 to align # Constraint # added constraint: constraint((T0292)P235.CB, (T0292)I246.CB) [> 4.1543 = 6.9238 < 9.0010] w=0.0956 to align # Constraint # added constraint: constraint((T0292)Y6.CB, (T0292)Y81.CB) [> 4.4662 = 7.4437 < 9.6768] w=0.0912 to align # Constraint # added constraint: constraint((T0292)Q185.CB, (T0292)W198.CB) [> 4.6880 = 7.8133 < 10.1573] w=0.0912 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)F158.CB) [> 4.5800 = 7.6334 < 9.9234] w=0.0912 to align # Constraint # added constraint: constraint((T0292)R138.CB, (T0292)F174.CB) [> 3.8142 = 6.3571 < 8.2642] w=0.0912 to align # Constraint # added constraint: constraint((T0292)L160.CB, (T0292)F174.CB) [> 3.7583 = 6.2639 < 8.1431] w=0.0912 to align # Constraint # added constraint: constraint((T0292)S16.CB, (T0292)D157.CB) [> 3.8966 = 6.4943 < 8.4425] w=0.0860 to align # Constraint # added constraint: constraint((T0292)P178.CB, (T0292)T215.CB) [> 4.5545 = 7.5908 < 9.8681] w=0.0851 to align # Constraint # added constraint: constraint((T0292)F174.CB, (T0292)Y191.CB) [> 3.9161 = 6.5269 < 8.4850] w=0.0730 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)Y238.CB) [> 4.4983 = 7.4971 < 9.7463] w=0.0730 to align # Constraint # added constraint: constraint((T0292)L37.CB, (T0292)L160.CB) [> 4.4868 = 7.4780 < 9.7214] w=0.0730 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)F170.CB) [> 4.0731 = 6.7886 < 8.8251] w=0.0678 to align # Constraint # added constraint: constraint((T0292)V54.CB, (T0292)I163.CB) [> 3.0708 = 5.1181 < 6.6535] w=0.0678 to align # Constraint # added constraint: constraint((T0292)F174.CB, (T0292)R188.CB) [> 4.1903 = 6.9838 < 9.0790] w=0.0669 to align # Constraint # added constraint: constraint((T0292)L160.CB, (T0292)A173.CB) [> 4.3360 = 7.2267 < 9.3948] w=0.0669 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)F170.CB) [> 4.3313 = 7.2189 < 9.3846] w=0.0617 to align # Constraint # added constraint: constraint((T0292)E53.CB, (T0292)Y68.CB) [> 4.3770 = 7.2951 < 9.4836] w=0.0608 to align # Constraint # added constraint: constraint((T0292)G18.CA, (T0292)A171.CB) [> 2.8570 = 4.7617 < 6.1902] w=0.0556 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)D157.CB) [> 3.8723 = 6.4539 < 8.3900] w=0.0547 to align # Constraint # added constraint: constraint((T0292)K61.CB, (T0292)E124.CB) [> 4.4759 = 7.4598 < 9.6977] w=0.0547 to align # Constraint # added constraint: constraint((T0292)C208.CB, (T0292)N243.CB) [> 4.6884 = 7.8140 < 10.1582] w=0.0547 to align # Constraint # added constraint: constraint((T0292)W34.CB, (T0292)I72.CB) [> 4.7006 = 7.8343 < 10.1846] w=0.0547 to align # Constraint # added constraint: constraint((T0292)G40.CA, (T0292)L80.CB) [> 3.8910 = 6.4849 < 8.4304] w=0.0547 to align # Constraint # added constraint: constraint((T0292)L210.CB, (T0292)I234.CB) [> 4.2969 = 7.1614 < 9.3098] w=0.0547 to align # Constraint # added constraint: constraint((T0292)V175.CB, (T0292)M186.CB) [> 4.3843 = 7.3071 < 9.4992] w=0.0547 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)A171.CB) [> 4.5368 = 7.5613 < 9.8298] w=0.0495 to align # Constraint # added constraint: constraint((T0292)S16.CB, (T0292)A161.CB) [> 3.7732 = 6.2887 < 8.1754] w=0.0495 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)A161.CB) [> 4.2852 = 7.1419 < 9.2845] w=0.0486 to align # Constraint # added constraint: constraint((T0292)H166.CB, (T0292)G176.CA) [> 4.7002 = 7.8336 < 10.1837] w=0.0374 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)V114.CB) [> 4.7660 = 7.9434 < 10.3264] w=0.0365 to align # Constraint # added constraint: constraint((T0292)T134.CB, (T0292)H166.CB) [> 3.6140 = 6.0234 < 7.8304] w=0.0365 to align # Constraint # added constraint: constraint((T0292)I65.CB, (T0292)D157.CB) [> 4.7605 = 7.9342 < 10.3144] w=0.0365 to align # Constraint # added constraint: constraint((T0292)V95.CB, (T0292)F110.CB) [> 4.6335 = 7.7225 < 10.0393] w=0.0365 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)L160.CB) [> 4.5081 = 7.5135 < 9.7675] w=0.0365 to align # Constraint # added constraint: constraint((T0292)G176.CA, (T0292)S199.CB) [> 4.3549 = 7.2581 < 9.4355] w=0.0365 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)P212.CB) [> 4.5349 = 7.5581 < 9.8255] w=0.0365 to align # Constraint # added constraint: constraint((T0292)V114.CB, (T0292)L204.CB) [> 4.5550 = 7.5917 < 9.8692] w=0.0365 to align # Constraint # added constraint: constraint((T0292)L50.CB, (T0292)Y81.CB) [> 4.6684 = 7.7807 < 10.1149] w=0.0365 to align # Constraint # added constraint: constraint((T0292)A121.CB, (T0292)V145.CB) [> 4.6556 = 7.7593 < 10.0872] w=0.0365 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)E206.CB) [> 4.5883 = 7.6472 < 9.9414] w=0.0365 to align # Constraint # added constraint: constraint((T0292)S190.CB, (T0292)D254.CB) [> 4.6476 = 7.7461 < 10.0699] w=0.0365 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)G159.CA) [> 3.8726 = 6.4544 < 8.3907] w=0.0365 to align # Constraint # added constraint: constraint((T0292)E206.CB, (T0292)A223.CB) [> 4.7577 = 7.9295 < 10.3084] w=0.0365 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)L160.CB) [> 4.2574 = 7.0956 < 9.2243] w=0.0365 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)G159.CA) [> 4.6398 = 7.7330 < 10.0530] w=0.0365 to align # Constraint # added constraint: constraint((T0292)F170.CB, (T0292)N187.CB) [> 3.4908 = 5.8180 < 7.5634] w=0.0365 to align # Constraint # added constraint: constraint((T0292)L60.CB, (T0292)G159.CA) [> 4.5596 = 7.5994 < 9.8792] w=0.0365 to align # Constraint # added constraint: constraint((T0292)S16.CB, (T0292)N144.CB) [> 4.0017 = 6.6695 < 8.6704] w=0.0313 to align # Constraint # added constraint: constraint((T0292)R19.CB, (T0292)A171.CB) [> 4.4131 = 7.3552 < 9.5617] w=0.0313 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)F174.CB) [> 4.6293 = 7.7155 < 10.0301] w=0.0313 to align # Constraint # added constraint: constraint((T0292)P142.CB, (T0292)L210.CB) [> 3.7852 = 6.3086 < 8.2012] w=0.0304 to align # Constraint # added constraint: constraint((T0292)A171.CB, (T0292)M181.CB) [> 4.6884 = 7.8141 < 10.1583] w=0.0304 to align # Constraint # added constraint: constraint((T0292)R25.CB, (T0292)W34.CB) [> 4.7009 = 7.8348 < 10.1852] w=0.0243 to align # Constraint # added constraint: constraint((T0292)I96.CB, (T0292)M211.CB) [> 3.9267 = 6.5444 < 8.5077] w=0.0243 to align # Constraint # added constraint: constraint((T0292)A3.CB, (T0292)R75.CB) [> 3.8986 = 6.4977 < 8.4470] w=0.0243 to align # Constraint # added constraint: constraint((T0292)K35.CB, (T0292)G159.CA) [> 4.2256 = 7.0427 < 9.1555] w=0.0182 to align # Constraint # added constraint: constraint((T0292)G13.CA, (T0292)R162.CB) [> 4.5946 = 7.6576 < 9.9549] w=0.0182 to align # Constraint # added constraint: constraint((T0292)S27.CB, (T0292)Y69.CB) [> 4.6804 = 7.8007 < 10.1409] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)G156.CA) [> 4.4475 = 7.4125 < 9.6362] w=0.0182 to align # Constraint # added constraint: constraint((T0292)S16.CB, (T0292)G156.CA) [> 3.4469 = 5.7448 < 7.4682] w=0.0182 to align # Constraint # added constraint: constraint((T0292)S16.CB, (T0292)F146.CB) [> 3.6021 = 6.0034 < 7.8044] w=0.0182 to align # Constraint # added constraint: constraint((T0292)V8.CB, (T0292)C20.CB) [> 4.7250 = 7.8750 < 10.2375] w=0.0182 to align # Constraint # added constraint: constraint((T0292)E7.CB, (T0292)C20.CB) [> 4.3752 = 7.2919 < 9.4795] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y6.CB, (T0292)C20.CB) [> 3.3290 = 5.5483 < 7.2129] w=0.0182 to align # Constraint # added constraint: constraint((T0292)D5.CB, (T0292)Q21.CB) [> 3.9279 = 6.5465 < 8.5105] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y68.CB, (T0292)G159.CA) [> 4.7209 = 7.8682 < 10.2287] w=0.0182 to align # Constraint # added constraint: constraint((T0292)T177.CB, (T0292)S199.CB) [> 4.7903 = 7.9839 < 10.3791] w=0.0182 to align # Constraint # added constraint: constraint((T0292)F146.CB, (T0292)L160.CB) [> 4.5015 = 7.5025 < 9.7533] w=0.0182 to align # Constraint # added constraint: constraint((T0292)N144.CB, (T0292)A161.CB) [> 3.5915 = 5.9858 < 7.7816] w=0.0182 to align # Constraint # added constraint: constraint((T0292)C125.CB, (T0292)T134.CB) [> 4.1332 = 6.8887 < 8.9554] w=0.0182 to align # Constraint # added constraint: constraint((T0292)A143.CB, (T0292)V175.CB) [> 4.5173 = 7.5289 < 9.7875] w=0.0182 to align # Constraint # added constraint: constraint((T0292)V95.CB, (T0292)L210.CB) [> 4.6986 = 7.8310 < 10.1803] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y180.CB, (T0292)G201.CA) [> 4.7405 = 7.9009 < 10.2712] w=0.0182 to align # Constraint # added constraint: constraint((T0292)C20.CB, (T0292)I163.CB) [> 4.6378 = 7.7296 < 10.0485] w=0.0182 to align # Constraint # added constraint: constraint((T0292)M84.CB, (T0292)A161.CB) [> 3.8925 = 6.4875 < 8.4337] w=0.0182 to align # Constraint # added constraint: constraint((T0292)T177.CB, (T0292)F214.CB) [> 3.1067 = 5.1778 < 6.7312] w=0.0182 to align # Constraint # added constraint: constraint((T0292)R2.CB, (T0292)Y81.CB) [> 3.5147 = 5.8579 < 7.6153] w=0.0182 to align # Constraint # added constraint: constraint((T0292)G201.CA, (T0292)I263.CB) [> 4.7504 = 7.9173 < 10.2924] w=0.0182 to align # Constraint # added constraint: constraint((T0292)L60.CB, (T0292)L160.CB) [> 4.4538 = 7.4231 < 9.6500] w=0.0182 to align # Constraint # added constraint: constraint((T0292)V135.CB, (T0292)L160.CB) [> 3.7520 = 6.2533 < 8.1293] w=0.0182 to align # Constraint # added constraint: constraint((T0292)I12.CB, (T0292)A143.CB) [> 4.2508 = 7.0847 < 9.2100] w=0.0182 to align # Constraint # added constraint: constraint((T0292)T119.CB, (T0292)I197.CB) [> 4.7459 = 7.9099 < 10.2828] w=0.0182 to align # Constraint # added constraint: constraint((T0292)M181.CB, (T0292)C202.CB) [> 4.6712 = 7.7854 < 10.1210] w=0.0182 to align # Constraint # added constraint: constraint((T0292)S182.CB, (T0292)C202.CB) [> 4.7018 = 7.8363 < 10.1872] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Q185.CB, (T0292)S199.CB) [> 4.7106 = 7.8510 < 10.2063] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y205.CB, (T0292)L242.CB) [> 4.1434 = 6.9056 < 8.9773] w=0.0182 to align # Constraint # added constraint: constraint((T0292)G13.CA, (T0292)F158.CB) [> 4.3140 = 7.1900 < 9.3470] w=0.0182 to align # Constraint # added constraint: constraint((T0292)L106.CB, (T0292)A209.CB) [> 4.4524 = 7.4206 < 9.6468] w=0.0182 to align # Constraint # added constraint: constraint((T0292)A209.CB, (T0292)L222.CB) [> 4.2556 = 7.0927 < 9.2205] w=0.0182 to align # Constraint # added constraint: constraint((T0292)Y17.CB, (T0292)F174.CB) [> 4.1134 = 6.8557 < 8.9125] w=0.0182 to align # Constraint # added constraint: constraint((T0292)G13.CA, (T0292)L160.CB) [> 4.1570 = 6.9283 < 9.0068] w=0.0182 to align # Constraint # added constraint: constraint((T0292)R19.CB, (T0292)L160.CB) [> 4.5519 = 7.5866 < 9.8625] w=0.0182 to align # Constraint # added constraint: constraint((T0292)G15.CA, (T0292)N144.CB) [> 4.6330 = 7.7217 < 10.0383] w=0.0131 to align # Constraint # added constraint: constraint((T0292)G132.CA, (T0292)E193.CB) [> 4.2589 = 7.0982 < 9.2277] w=0.0122 to align # Constraint # added constraint: constraint((T0292)V175.CB, (T0292)P213.CB) [> 4.5783 = 7.6306 < 9.9197] w=0.0122 to align # Constraint # added constraint: constraint((T0292)Y86.CB, (T0292)G149.CA) [> 4.4564 = 7.4273 < 9.6555] w=0.0122 to align # Constraint # added constraint: constraint((T0292)D196.CB, (T0292)S259.CB) [> 4.6147 = 7.6912 < 9.9986] w=0.0061 to align # Constraint # added constraint: constraint((T0292)L164.CB, (T0292)T177.CB) [> 4.6413 = 7.7355 < 10.0562] w=0.0061 to align # Constraint # added constraint: constraint((T0292)L164.CB, (T0292)P178.CB) [> 2.6556 = 4.4260 < 5.7538] w=0.0061 to align # Constraint # added constraint: constraint((T0292)K172.CB, (T0292)M181.CB) [> 3.9256 = 6.5427 < 8.5056] w=0.0061 to align # Constraint # added constraint: constraint((T0292)L50.CB, (T0292)I73.CB) [> 4.6680 = 7.7800 < 10.1140] w=0.0061 to align # Constraint # added constraint: constraint((T0292)T168.CB, (T0292)D254.CB) [> 3.0657 = 5.1094 < 6.6423] w=0.0061 to align # Constraint # added constraint: constraint((T0292)L56.CB, (T0292)T134.CB) [> 4.7532 = 7.9220 < 10.2986] w=0.0061 to align # Constraint # added constraint: constraint((T0292)M211.CB, (T0292)Y238.CB) [> 3.8677 = 6.4461 < 8.3800] w=0.0061 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0292/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0292/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)A223.C and (T0292)G224.N only 0 apart, marking (T0292)G224.N as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.CA only 0 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.CA only 0 apart, marking (T0292)G224.CA as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.O only 0 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.O only 0 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.O only 0 apart, marking (T0292)G224.O as missing WARNING: atoms too close: (T0292)G224.O and (T0292)G224.C only 0 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.CA and (T0292)G224.C only 0 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)G224.N and (T0292)G224.C only 0 apart, marking (T0292)G224.C as missing WARNING: atoms too close: (T0292)A223.C and (T0292)G224.C only 0 apart, marking (T0292)G224.C as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0292)G90.O and (T0292)D91.N only 0 apart, marking (T0292)D91.N as missing WARNING: atoms too close: (T0292)L92.O and (T0292)A93.N only 0 apart, marking (T0292)A93.N as missing WARNING: atoms too close: (T0292)S199.O and (T0292)L200.N only 0 apart, marking (T0292)L200.N as missing # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0292 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 249 model score -0.4899 model score -0.1963 model score -0.5106 model score -0.4880 model score -0.4656 model score -0.5272 model score -0.5425 model score -0.5319 model score -0.5358 model score -0.5352 model score -0.5440 model score -0.5501 model score -0.5342 model score -0.5284 model score -0.5210 model score -0.7091 model score -0.4936 model score 1.0493 model score 0.2581 model score -0.4164 model score 1.5553 model score 1.5159 model score 1.6242 model score 1.4451 model score 1.7802 model score -0.6916 model score -0.5715 model score -0.5867 model score -0.4498 model score -0.6497 model score -0.6907 model score -0.7131 model score -0.6978 model score -0.5792 model score -0.6650 model score -0.5081 model score -0.4354 model score -0.6371 model score -0.6290 model score -0.2658 model score -0.4619 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2770 model score -0.6861 model score -0.6581 model score -0.5081 model score -0.5893 model score -0.6890 model score -0.5792 model score -0.7131 model score -0.6978 model score -0.6581 model score -0.6650 model score -0.7109 model score 0.4938 model score 1.9903 model score 1.5248 model score -0.3646 model score 1.2770 model score 1.2771 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2770 model score 1.2771 model score 2.2060 model score -0.5245 model score -0.0620 model score -0.6446 model score -0.6052 model score -0.6685 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2770 model score -0.4935 model score -0.5026 model score -0.4859 model score -0.4512 model score -0.4825 model score -0.7096 model score -0.7853 model score -0.7017 model score -0.7074 model score -0.7133 model score -0.6897 model score -0.7115 model score -0.6826 model score -0.6826 model score -0.6925 model score -0.6107 model score -0.6871 model score -0.6159 model score -0.2505 model score -0.1625 model score -0.4434 model score -0.6368 model score -0.6562 model score -0.6003 model score -0.6774 model score -0.4907 model score -0.5026 model score -0.6027 model score -0.4904 model score -0.3008 model score -0.1677 model score -0.2137 model score -0.3206 model score -0.0917 model score -0.5272 model score -0.3050 model score -0.3179 model score -0.3331 model score -0.2788 model score -0.3553 model score -0.6747 model score -0.5858 model score -0.6178 model score -0.1139 model score -0.3421 model score -0.7057 model score -0.6854 model score -0.6236 model score -0.6897 model score -0.6541 model score -0.2034 model score -0.6608 model score -0.6907 model score -0.6989 model score -0.6940 model score -0.6920 model score -0.5915 model score -0.5915 model score -0.5944 model score -0.6541 model score -0.6398 model score -0.7140 model score -0.7374 model score -0.7255 model score -0.7024 model score -0.7022 model score -0.5235 model score -0.4008 model score -0.5853 model score -0.5461 model score -0.6234 model score -0.7166 model score -0.7096 model score -0.6125 model score -0.6114 model score -0.5656 model score -0.6145 model score -0.5231 model score -0.6989 model score -0.7045 model score -0.5238 model score -0.4498 model score -0.7079 model score -0.4272 model score -0.4362 model score -0.4322 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.7102 model score 0.0664 model score -0.3871 model score -0.6958 model score -0.6760 model score -0.7374 model score -0.6235 model score -0.6298 model score -0.5943 model score -0.6854 model score -0.6277 model score -0.6312 model score -0.6930 model score -0.5882 model score -0.7321 model score -0.6959 model score -0.7412 model score -0.6211 model score -0.6304 model score -0.6789 model score 1.2771 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6213 model score 1.2771 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.7165 model score -0.5743 model score -0.5249 model score -0.7139 model score -0.7471 model score -0.6581 model score -0.7337 model score 1.2770 model score 1.2771 model score 1.2770 model score 1.2770 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2770 model score 1.2770 model score 1.2771 model score -0.7295 model score -0.5126 model score 1.9912 model score 2.0867 model score 2.1233 model score 2.3735 model score -0.7289 model score -0.4728 model score -0.6011 model score -0.5822 model score -0.6313 model score -0.6708 model score -0.6520 model score -0.6267 model score -0.5594 model score -0.5559 model score -0.7257 model score -0.7366 model score -0.0729 model score -0.6360 model score -0.3997 model score -0.7241 model score -0.6322 weight: 0.9158 eval: -0.4899 min: -0.7853 max: 2.3735 weight: 0.8322 eval: -0.1963 min: -0.7853 max: 2.3735 weight: 0.9217 eval: -0.5106 min: -0.7853 max: 2.3735 weight: 0.9153 eval: -0.4880 min: -0.7853 max: 2.3735 weight: 0.9089 eval: -0.4656 min: -0.7853 max: 2.3735 weight: 0.9265 eval: -0.5272 min: -0.7853 max: 2.3735 weight: 0.9308 eval: -0.5425 min: -0.7853 max: 2.3735 weight: 0.9278 eval: -0.5319 min: -0.7853 max: 2.3735 weight: 0.9289 eval: -0.5358 min: -0.7853 max: 2.3735 weight: 0.9288 eval: -0.5352 min: -0.7853 max: 2.3735 weight: 0.9313 eval: -0.5440 min: -0.7853 max: 2.3735 weight: 0.9330 eval: -0.5501 min: -0.7853 max: 2.3735 weight: 0.9285 eval: -0.5342 min: -0.7853 max: 2.3735 weight: 0.9268 eval: -0.5284 min: -0.7853 max: 2.3735 weight: 0.9247 eval: -0.5210 min: -0.7853 max: 2.3735 weight: 0.9783 eval: -0.7091 min: -0.7853 max: 2.3735 weight: 0.9169 eval: -0.4936 min: -0.7853 max: 2.3735 weight: 0.4773 eval: 1.0493 min: -0.7853 max: 2.3735 weight: 0.7027 eval: 0.2581 min: -0.7853 max: 2.3735 weight: 0.8949 eval: -0.4164 min: -0.7853 max: 2.3735 weight: 0.3331 eval: 1.5553 min: -0.7853 max: 2.3735 weight: 0.3443 eval: 1.5159 min: -0.7853 max: 2.3735 weight: 0.3135 eval: 1.6242 min: -0.7853 max: 2.3735 weight: 0.3645 eval: 1.4451 min: -0.7853 max: 2.3735 weight: 0.2691 eval: 1.7802 min: -0.7853 max: 2.3735 weight: 0.9733 eval: -0.6916 min: -0.7853 max: 2.3735 weight: 0.9391 eval: -0.5715 min: -0.7853 max: 2.3735 weight: 0.9434 eval: -0.5867 min: -0.7853 max: 2.3735 weight: 0.9044 eval: -0.4498 min: -0.7853 max: 2.3735 weight: 0.9614 eval: -0.6497 min: -0.7853 max: 2.3735 weight: 0.9731 eval: -0.6907 min: -0.7853 max: 2.3735 weight: 0.9794 eval: -0.7131 min: -0.7853 max: 2.3735 weight: 0.9751 eval: -0.6978 min: -0.7853 max: 2.3735 weight: 0.9413 eval: -0.5792 min: -0.7853 max: 2.3735 weight: 0.9657 eval: -0.6650 min: -0.7853 max: 2.3735 weight: 0.9210 eval: -0.5081 min: -0.7853 max: 2.3735 weight: 0.9003 eval: -0.4354 min: -0.7853 max: 2.3735 weight: 0.9578 eval: -0.6371 min: -0.7853 max: 2.3735 weight: 0.9555 eval: -0.6290 min: -0.7853 max: 2.3735 weight: 0.8520 eval: -0.2658 min: -0.7853 max: 2.3735 weight: 0.9079 eval: -0.4619 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.9718 eval: -0.6861 min: -0.7853 max: 2.3735 weight: 0.9638 eval: -0.6581 min: -0.7853 max: 2.3735 weight: 0.9210 eval: -0.5081 min: -0.7853 max: 2.3735 weight: 0.9442 eval: -0.5893 min: -0.7853 max: 2.3735 weight: 0.9726 eval: -0.6890 min: -0.7853 max: 2.3735 weight: 0.9413 eval: -0.5792 min: -0.7853 max: 2.3735 weight: 0.9794 eval: -0.7131 min: -0.7853 max: 2.3735 weight: 0.9751 eval: -0.6978 min: -0.7853 max: 2.3735 weight: 0.9638 eval: -0.6581 min: -0.7853 max: 2.3735 weight: 0.9657 eval: -0.6650 min: -0.7853 max: 2.3735 weight: 0.9788 eval: -0.7109 min: -0.7853 max: 2.3735 weight: 0.6356 eval: 0.4938 min: -0.7853 max: 2.3735 weight: 0.2092 eval: 1.9903 min: -0.7853 max: 2.3735 weight: 0.3418 eval: 1.5248 min: -0.7853 max: 2.3735 weight: 0.8802 eval: -0.3646 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.1477 eval: 2.2060 min: -0.7853 max: 2.3735 weight: 0.9257 eval: -0.5245 min: -0.7853 max: 2.3735 weight: 0.7939 eval: -0.0620 min: -0.7853 max: 2.3735 weight: 0.9599 eval: -0.6446 min: -0.7853 max: 2.3735 weight: 0.9487 eval: -0.6052 min: -0.7853 max: 2.3735 weight: 0.9667 eval: -0.6685 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.9169 eval: -0.4935 min: -0.7853 max: 2.3735 weight: 0.9195 eval: -0.5026 min: -0.7853 max: 2.3735 weight: 0.9147 eval: -0.4859 min: -0.7853 max: 2.3735 weight: 0.9048 eval: -0.4512 min: -0.7853 max: 2.3735 weight: 0.9137 eval: -0.4825 min: -0.7853 max: 2.3735 weight: 0.9784 eval: -0.7096 min: -0.7853 max: 2.3735 weight: 1.0000 eval: -0.7853 min: -0.7853 max: 2.3735 weight: 0.9762 eval: -0.7017 min: -0.7853 max: 2.3735 weight: 0.9778 eval: -0.7074 min: -0.7853 max: 2.3735 weight: 0.9795 eval: -0.7133 min: -0.7853 max: 2.3735 weight: 0.9728 eval: -0.6897 min: -0.7853 max: 2.3735 weight: 0.9790 eval: -0.7115 min: -0.7853 max: 2.3735 weight: 0.9707 eval: -0.6826 min: -0.7853 max: 2.3735 weight: 0.9707 eval: -0.6826 min: -0.7853 max: 2.3735 weight: 0.9736 eval: -0.6925 min: -0.7853 max: 2.3735 weight: 0.9503 eval: -0.6107 min: -0.7853 max: 2.3735 weight: 0.9720 eval: -0.6871 min: -0.7853 max: 2.3735 weight: 0.9517 eval: -0.6159 min: -0.7853 max: 2.3735 weight: 0.8476 eval: -0.2505 min: -0.7853 max: 2.3735 weight: 0.8226 eval: -0.1625 min: -0.7853 max: 2.3735 weight: 0.9026 eval: -0.4434 min: -0.7853 max: 2.3735 weight: 0.9577 eval: -0.6368 min: -0.7853 max: 2.3735 weight: 0.9632 eval: -0.6562 min: -0.7853 max: 2.3735 weight: 0.9473 eval: -0.6003 min: -0.7853 max: 2.3735 weight: 0.9693 eval: -0.6774 min: -0.7853 max: 2.3735 weight: 0.9161 eval: -0.4907 min: -0.7853 max: 2.3735 weight: 0.9195 eval: -0.5026 min: -0.7853 max: 2.3735 weight: 0.9480 eval: -0.6027 min: -0.7853 max: 2.3735 weight: 0.9160 eval: -0.4904 min: -0.7853 max: 2.3735 weight: 0.8620 eval: -0.3008 min: -0.7853 max: 2.3735 weight: 0.8240 eval: -0.1677 min: -0.7853 max: 2.3735 weight: 0.8372 eval: -0.2137 min: -0.7853 max: 2.3735 weight: 0.8676 eval: -0.3206 min: -0.7853 max: 2.3735 weight: 0.8024 eval: -0.0917 min: -0.7853 max: 2.3735 weight: 0.9265 eval: -0.5272 min: -0.7853 max: 2.3735 weight: 0.8632 eval: -0.3050 min: -0.7853 max: 2.3735 weight: 0.8668 eval: -0.3179 min: -0.7853 max: 2.3735 weight: 0.8712 eval: -0.3331 min: -0.7853 max: 2.3735 weight: 0.8557 eval: -0.2788 min: -0.7853 max: 2.3735 weight: 0.8775 eval: -0.3553 min: -0.7853 max: 2.3735 weight: 0.9685 eval: -0.6747 min: -0.7853 max: 2.3735 weight: 0.9432 eval: -0.5858 min: -0.7853 max: 2.3735 weight: 0.9523 eval: -0.6178 min: -0.7853 max: 2.3735 weight: 0.8087 eval: -0.1139 min: -0.7853 max: 2.3735 weight: 0.8737 eval: -0.3421 min: -0.7853 max: 2.3735 weight: 0.9773 eval: -0.7057 min: -0.7853 max: 2.3735 weight: 0.9715 eval: -0.6854 min: -0.7853 max: 2.3735 weight: 0.9539 eval: -0.6236 min: -0.7853 max: 2.3735 weight: 0.9728 eval: -0.6897 min: -0.7853 max: 2.3735 weight: 0.9626 eval: -0.6541 min: -0.7853 max: 2.3735 weight: 0.8342 eval: -0.2034 min: -0.7853 max: 2.3735 weight: 0.9645 eval: -0.6608 min: -0.7853 max: 2.3735 weight: 0.9731 eval: -0.6907 min: -0.7853 max: 2.3735 weight: 0.9754 eval: -0.6989 min: -0.7853 max: 2.3735 weight: 0.9740 eval: -0.6940 min: -0.7853 max: 2.3735 weight: 0.9734 eval: -0.6920 min: -0.7853 max: 2.3735 weight: 0.9448 eval: -0.5915 min: -0.7853 max: 2.3735 weight: 0.9448 eval: -0.5915 min: -0.7853 max: 2.3735 weight: 0.9456 eval: -0.5944 min: -0.7853 max: 2.3735 weight: 0.9626 eval: -0.6541 min: -0.7853 max: 2.3735 weight: 0.9586 eval: -0.6398 min: -0.7853 max: 2.3735 weight: 0.9797 eval: -0.7140 min: -0.7853 max: 2.3735 weight: 0.9864 eval: -0.7374 min: -0.7853 max: 2.3735 weight: 0.9830 eval: -0.7255 min: -0.7853 max: 2.3735 weight: 0.9764 eval: -0.7024 min: -0.7853 max: 2.3735 weight: 0.9763 eval: -0.7022 min: -0.7853 max: 2.3735 weight: 0.9254 eval: -0.5235 min: -0.7853 max: 2.3735 weight: 0.8905 eval: -0.4008 min: -0.7853 max: 2.3735 weight: 0.9430 eval: -0.5853 min: -0.7853 max: 2.3735 weight: 0.9319 eval: -0.5461 min: -0.7853 max: 2.3735 weight: 0.9539 eval: -0.6234 min: -0.7853 max: 2.3735 weight: 0.9805 eval: -0.7166 min: -0.7853 max: 2.3735 weight: 0.9785 eval: -0.7096 min: -0.7853 max: 2.3735 weight: 0.9508 eval: -0.6125 min: -0.7853 max: 2.3735 weight: 0.9505 eval: -0.6114 min: -0.7853 max: 2.3735 weight: 0.9374 eval: -0.5656 min: -0.7853 max: 2.3735 weight: 0.9514 eval: -0.6145 min: -0.7853 max: 2.3735 weight: 0.9253 eval: -0.5231 min: -0.7853 max: 2.3735 weight: 0.9754 eval: -0.6989 min: -0.7853 max: 2.3735 weight: 0.9770 eval: -0.7045 min: -0.7853 max: 2.3735 weight: 0.9255 eval: -0.5238 min: -0.7853 max: 2.3735 weight: 0.9044 eval: -0.4498 min: -0.7853 max: 2.3735 weight: 0.9780 eval: -0.7079 min: -0.7853 max: 2.3735 weight: 0.8980 eval: -0.4272 min: -0.7853 max: 2.3735 weight: 0.9005 eval: -0.4362 min: -0.7853 max: 2.3735 weight: 0.8994 eval: -0.4322 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.9786 eval: -0.7102 min: -0.7853 max: 2.3735 weight: 0.7573 eval: 0.0664 min: -0.7853 max: 2.3735 weight: 0.8866 eval: -0.3871 min: -0.7853 max: 2.3735 weight: 0.9745 eval: -0.6958 min: -0.7853 max: 2.3735 weight: 0.9689 eval: -0.6760 min: -0.7853 max: 2.3735 weight: 0.9864 eval: -0.7374 min: -0.7853 max: 2.3735 weight: 0.9539 eval: -0.6235 min: -0.7853 max: 2.3735 weight: 0.9557 eval: -0.6298 min: -0.7853 max: 2.3735 weight: 0.9456 eval: -0.5943 min: -0.7853 max: 2.3735 weight: 0.9716 eval: -0.6854 min: -0.7853 max: 2.3735 weight: 0.9551 eval: -0.6277 min: -0.7853 max: 2.3735 weight: 0.9561 eval: -0.6312 min: -0.7853 max: 2.3735 weight: 0.9737 eval: -0.6930 min: -0.7853 max: 2.3735 weight: 0.9439 eval: -0.5882 min: -0.7853 max: 2.3735 weight: 0.9849 eval: -0.7321 min: -0.7853 max: 2.3735 weight: 0.9746 eval: -0.6959 min: -0.7853 max: 2.3735 weight: 0.9875 eval: -0.7412 min: -0.7853 max: 2.3735 weight: 0.9532 eval: -0.6211 min: -0.7853 max: 2.3735 weight: 0.9559 eval: -0.6304 min: -0.7853 max: 2.3735 weight: 0.9697 eval: -0.6789 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.9533 eval: -0.6213 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.9804 eval: -0.7165 min: -0.7853 max: 2.3735 weight: 0.9399 eval: -0.5743 min: -0.7853 max: 2.3735 weight: 0.9258 eval: -0.5249 min: -0.7853 max: 2.3735 weight: 0.9797 eval: -0.7139 min: -0.7853 max: 2.3735 weight: 0.9891 eval: -0.7471 min: -0.7853 max: 2.3735 weight: 0.9638 eval: -0.6581 min: -0.7853 max: 2.3735 weight: 0.9853 eval: -0.7337 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2770 min: -0.7853 max: 2.3735 weight: 0.4124 eval: 1.2771 min: -0.7853 max: 2.3735 weight: 0.9841 eval: -0.7295 min: -0.7853 max: 2.3735 weight: 0.9223 eval: -0.5126 min: -0.7853 max: 2.3735 weight: 0.2089 eval: 1.9912 min: -0.7853 max: 2.3735 weight: 0.1817 eval: 2.0867 min: -0.7853 max: 2.3735 weight: 0.1713 eval: 2.1233 min: -0.7853 max: 2.3735 weight: 0.1000 eval: 2.3735 min: -0.7853 max: 2.3735 weight: 0.9839 eval: -0.7289 min: -0.7853 max: 2.3735 weight: 0.9110 eval: -0.4728 min: -0.7853 max: 2.3735 weight: 0.9475 eval: -0.6011 min: -0.7853 max: 2.3735 weight: 0.9421 eval: -0.5822 min: -0.7853 max: 2.3735 weight: 0.9561 eval: -0.6313 min: -0.7853 max: 2.3735 weight: 0.9674 eval: -0.6708 min: -0.7853 max: 2.3735 weight: 0.9620 eval: -0.6520 min: -0.7853 max: 2.3735 weight: 0.9548 eval: -0.6267 min: -0.7853 max: 2.3735 weight: 0.9356 eval: -0.5594 min: -0.7853 max: 2.3735 weight: 0.9347 eval: -0.5559 min: -0.7853 max: 2.3735 weight: 0.9830 eval: -0.7257 min: -0.7853 max: 2.3735 weight: 0.9861 eval: -0.7366 min: -0.7853 max: 2.3735 weight: 0.7970 eval: -0.0729 min: -0.7853 max: 2.3735 weight: 0.9575 eval: -0.6360 min: -0.7853 max: 2.3735 weight: 0.8901 eval: -0.3997 min: -0.7853 max: 2.3735 weight: 0.9826 eval: -0.7241 min: -0.7853 max: 2.3735 weight: 0.9564 eval: -0.6322 min: -0.7853 max: 2.3735 Adding 8086 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -456.4701, CN propb: -456.4701 weights: 0.5343 constraints: 598 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 598 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 598 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 7488 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 7488 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 8086 # command: