# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0287/ # command:# Making conformation for sequence T0287 numbered 1 through 199 Created new target T0287 from T0287.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0287/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0287//projects/compbio/experiments/protein-predict/casp7/T0287/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0287//projects/compbio/experiments/protein-predict/casp7/T0287/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0287/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0287/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)I40.CB) [> 2.8951 = 4.8252 < 6.2727] w=1.0000 to align # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I44.CB) [> 3.3167 = 5.5279 < 7.1863] w=1.0000 to align # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)I40.CB) [> 3.6408 = 6.0679 < 7.8883] w=0.9561 to align # Constraint # added constraint: constraint((T0287)Y72.CB, (T0287)F84.CB) [> 3.5315 = 5.8858 < 7.6516] w=0.9183 to align # Constraint # added constraint: constraint((T0287)E92.CB, (T0287)A103.CB) [> 3.8365 = 6.3941 < 8.3123] w=0.9052 to align # Constraint # added constraint: constraint((T0287)F110.CB, (T0287)F125.CB) [> 3.0589 = 5.0982 < 6.6276] w=0.7352 to align # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)I44.CB) [> 4.0302 = 6.7170 < 8.7320] w=0.7156 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L99.CB) [> 3.9399 = 6.5665 < 8.5364] w=0.7052 to align # Constraint # added constraint: constraint((T0287)L31.CB, (T0287)Q43.CB) [> 3.5004 = 5.8340 < 7.5842] w=0.6749 to align # Constraint # added constraint: constraint((T0287)A74.CB, (T0287)V87.CB) [> 2.9503 = 4.9172 < 6.3923] w=0.6749 to align # Constraint # added constraint: constraint((T0287)A74.CB, (T0287)Y88.CB) [> 4.2471 = 7.0785 < 9.2021] w=0.6749 to align # Constraint # added constraint: constraint((T0287)L182.CB, (T0287)M191.CB) [> 3.9876 = 6.6460 < 8.6398] w=0.6749 to align # Constraint # added constraint: constraint((T0287)K58.CB, (T0287)G80.CA) [> 4.3503 = 7.2505 < 9.4257] w=0.6672 to align # Constraint # added constraint: constraint((T0287)L90.CB, (T0287)A101.CB) [> 3.7581 = 6.2635 < 8.1425] w=0.6478 to align # Constraint # added constraint: constraint((T0287)I135.CB, (T0287)L154.CB) [> 3.9621 = 6.6035 < 8.5846] w=0.6268 to align # Constraint # added constraint: constraint((T0287)L144.CB, (T0287)K153.CB) [> 3.9036 = 6.5061 < 8.4579] w=0.6237 to align # Constraint # added constraint: constraint((T0287)I142.CB, (T0287)F155.CB) [> 3.6545 = 6.0908 < 7.9180] w=0.6237 to align # Constraint # added constraint: constraint((T0287)M5.CB, (T0287)I40.CB) [> 4.3405 = 7.2341 < 9.4044] w=0.6163 to align # Constraint # added constraint: constraint((T0287)I117.CB, (T0287)M138.CB) [> 3.8758 = 6.4596 < 8.3975] w=0.5903 to align # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)I76.CB) [> 3.8328 = 6.3880 < 8.3044] w=0.5848 to align # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)I76.CB) [> 3.4244 = 5.7073 < 7.4194] w=0.5848 to align # Constraint # added constraint: constraint((T0287)V81.CB, (T0287)L99.CB) [> 3.3396 = 5.5659 < 7.2357] w=0.5669 to align # Constraint # added constraint: constraint((T0287)L151.CB, (T0287)I171.CB) [> 3.6580 = 6.0966 < 7.9256] w=0.5626 to align # Constraint # added constraint: constraint((T0287)Y165.CB, (T0287)Y174.CB) [> 2.5286 = 4.2143 < 5.4786] w=0.5600 to align # Constraint # added constraint: constraint((T0287)Y72.CB, (T0287)Y88.CB) [> 3.6606 = 6.1010 < 7.9313] w=0.5488 to align # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)M138.CB) [> 4.6503 = 7.7504 < 10.0756] w=0.5419 to align # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)V64.CB) [> 3.7852 = 6.3088 < 8.2014] w=0.5417 to align # Constraint # added constraint: constraint((T0287)L91.CB, (T0287)I102.CB) [> 3.9001 = 6.5002 < 8.4502] w=0.5407 to align # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)L61.CB) [> 3.7690 = 6.2817 < 8.1662] w=0.5270 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)V178.CB) [> 4.1265 = 6.8775 < 8.9407] w=0.5246 to align # Constraint # added constraint: constraint((T0287)I135.CB, (T0287)L152.CB) [> 3.4285 = 5.7142 < 7.4285] w=0.5046 to align # Constraint # added constraint: constraint((T0287)S78.CB, (T0287)L90.CB) [> 3.7213 = 6.2022 < 8.0628] w=0.4966 to align # Constraint # added constraint: constraint((T0287)D62.CB, (T0287)V81.CB) [> 4.4085 = 7.3474 < 9.5516] w=0.4966 to align # Constraint # added constraint: constraint((T0287)A103.CB, (T0287)Y174.CB) [> 4.1599 = 6.9332 < 9.0131] w=0.4888 to align # Constraint # added constraint: constraint((T0287)A103.CB, (T0287)I171.CB) [> 4.4851 = 7.4752 < 9.7178] w=0.4888 to align # Constraint # added constraint: constraint((T0287)A13.CB, (T0287)L26.CB) [> 4.4638 = 7.4396 < 9.6715] w=0.4781 to align # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)I40.CB) [> 3.8716 = 6.4527 < 8.3885] w=0.4781 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I44.CB) [> 4.6560 = 7.7601 < 10.0881] w=0.4781 to align # Constraint # added constraint: constraint((T0287)R6.CB, (T0287)I41.CB) [> 3.6906 = 6.1511 < 7.9964] w=0.4781 to align # Constraint # added constraint: constraint((T0287)M5.CB, (T0287)K45.CB) [> 3.8623 = 6.4371 < 8.3683] w=0.4781 to align # Constraint # added constraint: constraint((T0287)M5.CB, (T0287)I44.CB) [> 3.5792 = 5.9654 < 7.7550] w=0.4781 to align # Constraint # added constraint: constraint((T0287)M47.CB, (T0287)Y68.CB) [> 3.6647 = 6.1079 < 7.9403] w=0.4649 to align # Constraint # added constraint: constraint((T0287)R73.CB, (T0287)F84.CB) [> 4.2703 = 7.1172 < 9.2523] w=0.4534 to align # Constraint # added constraint: constraint((T0287)L26.CB, (T0287)K39.CB) [> 4.5726 = 7.6210 < 9.9074] w=0.4533 to align # Constraint # added constraint: constraint((T0287)F108.CB, (T0287)N167.CB) [> 2.8964 = 4.8273 < 6.2754] w=0.4509 to align # Constraint # added constraint: constraint((T0287)F108.CB, (T0287)F164.CB) [> 4.1191 = 6.8651 < 8.9246] w=0.4509 to align # Constraint # added constraint: constraint((T0287)N107.CB, (T0287)N167.CB) [> 4.4132 = 7.3554 < 9.5620] w=0.4509 to align # Constraint # added constraint: constraint((T0287)L118.CB, (T0287)Q141.CB) [> 4.7459 = 7.9099 < 10.2829] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I117.CB, (T0287)F155.CB) [> 3.5665 = 5.9442 < 7.7275] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I117.CB, (T0287)L154.CB) [> 3.6110 = 6.0183 < 7.8238] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I117.CB, (T0287)K153.CB) [> 2.6871 = 4.4785 < 5.8220] w=0.4477 to align # Constraint # added constraint: constraint((T0287)R115.CB, (T0287)K153.CB) [> 4.1277 = 6.8795 < 8.9433] w=0.4477 to align # Constraint # added constraint: constraint((T0287)D114.CB, (T0287)F155.CB) [> 3.7039 = 6.1732 < 8.0251] w=0.4477 to align # Constraint # added constraint: constraint((T0287)L98.CB, (T0287)F108.CB) [> 3.1500 = 5.2500 < 6.8251] w=0.4477 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)L154.CB) [> 2.8674 = 4.7790 < 6.2126] w=0.4477 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)K153.CB) [> 4.0451 = 6.7419 < 8.7645] w=0.4477 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)L152.CB) [> 4.7322 = 7.8870 < 10.2530] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)V156.CB) [> 4.2918 = 7.1530 < 9.2989] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)F155.CB) [> 4.4698 = 7.4496 < 9.6846] w=0.4477 to align # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)L154.CB) [> 2.8084 = 4.6806 < 6.0848] w=0.4477 to align # Constraint # added constraint: constraint((T0287)L118.CB, (T0287)V156.CB) [> 3.1165 = 5.1943 < 6.7525] w=0.4477 to align # Constraint # added constraint: constraint((T0287)L118.CB, (T0287)L154.CB) [> 3.7125 = 6.1874 < 8.0437] w=0.4477 to align # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)V87.CB) [> 4.1451 = 6.9085 < 8.9811] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L91.CB) [> 4.7689 = 7.9481 < 10.3326] w=0.4465 to align # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)V87.CB) [> 4.7715 = 7.9524 < 10.3382] w=0.4465 to align # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)F164.CB) [> 3.9784 = 6.6307 < 8.6199] w=0.4465 to align # Constraint # added constraint: constraint((T0287)I79.CB, (T0287)N167.CB) [> 4.7541 = 7.9235 < 10.3006] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)F164.CB) [> 2.9632 = 4.9387 < 6.4202] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)N167.CB) [> 3.1785 = 5.2975 < 6.8868] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L168.CB) [> 3.0491 = 5.0818 < 6.6064] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V87.CB, (T0287)F164.CB) [> 3.1460 = 5.2433 < 6.8163] w=0.4465 to align # Constraint # added constraint: constraint((T0287)K58.CB, (T0287)I76.CB) [> 3.9999 = 6.6665 < 8.6664] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)Y72.CB) [> 4.1360 = 6.8933 < 8.9613] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L61.CB) [> 4.5953 = 7.6589 < 9.9565] w=0.4465 to align # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)H55.CB) [> 3.8047 = 6.3411 < 8.2435] w=0.4465 to align # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)F51.CB) [> 4.3869 = 7.3115 < 9.5049] w=0.4465 to align # Constraint # added constraint: constraint((T0287)L181.CB, (T0287)Y190.CB) [> 4.7059 = 7.8431 < 10.1960] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V178.CB, (T0287)Y190.CB) [> 3.5888 = 5.9813 < 7.7757] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V178.CB, (T0287)L187.CB) [> 3.9355 = 6.5592 < 8.5270] w=0.4465 to align # Constraint # added constraint: constraint((T0287)Y165.CB, (T0287)Y177.CB) [> 3.7066 = 6.1777 < 8.0310] w=0.4465 to align # Constraint # added constraint: constraint((T0287)N163.CB, (T0287)Y190.CB) [> 4.5575 = 7.5958 < 9.8746] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)Y190.CB) [> 4.1535 = 6.9225 < 8.9992] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)L181.CB) [> 3.8481 = 6.4134 < 8.3375] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)N175.CB) [> 4.5261 = 7.5435 < 9.8066] w=0.4465 to align # Constraint # added constraint: constraint((T0287)V162.CB, (T0287)Y174.CB) [> 2.6714 = 4.4524 < 5.7881] w=0.4465 to align # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)F164.CB) [> 2.7863 = 4.6439 < 6.0371] w=0.4465 to align # Constraint # added constraint: constraint((T0287)Y88.CB, (T0287)Y165.CB) [> 4.2499 = 7.0832 < 9.2082] w=0.4465 to align # Constraint # added constraint: constraint((T0287)N105.CB, (T0287)F124.CB) [> 4.4500 = 7.4167 < 9.6417] w=0.4465 to align # Constraint # added constraint: constraint((T0287)L109.CB, (T0287)F125.CB) [> 3.9760 = 6.6267 < 8.6147] w=0.4465 to align # Constraint # added constraint: constraint((T0287)L109.CB, (T0287)K184.CB) [> 3.9904 = 6.6506 < 8.6458] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F110.CB, (T0287)P123.CB) [> 3.3989 = 5.6649 < 7.3643] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F110.CB, (T0287)F124.CB) [> 3.9543 = 6.5905 < 8.5676] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F110.CB, (T0287)D186.CB) [> 3.9653 = 6.6089 < 8.5915] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F113.CB, (T0287)P123.CB) [> 4.5257 = 7.5429 < 9.8058] w=0.4465 to align # Constraint # added constraint: constraint((T0287)F113.CB, (T0287)F124.CB) [> 3.1279 = 5.2132 < 6.7771] w=0.4465 to align # Constraint # added constraint: constraint((T0287)I40.CB, (T0287)I102.CB) [> 4.0208 = 6.7014 < 8.7118] w=0.4243 to align # Constraint # added constraint: constraint((T0287)Q43.CB, (T0287)L98.CB) [> 4.3889 = 7.3149 < 9.5093] w=0.4243 to align # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)L98.CB) [> 4.4726 = 7.4543 < 9.6906] w=0.4243 to align # Constraint # added constraint: constraint((T0287)L32.CB, (T0287)F108.CB) [> 3.7127 = 6.1878 < 8.0441] w=0.4243 to align # Constraint # added constraint: constraint((T0287)L151.CB, (T0287)L168.CB) [> 4.4406 = 7.4011 < 9.6214] w=0.4243 to align # Constraint # added constraint: constraint((T0287)L151.CB, (T0287)N167.CB) [> 3.4270 = 5.7116 < 7.4251] w=0.4243 to align # Constraint # added constraint: constraint((T0287)Y145.CB, (T0287)N167.CB) [> 4.0003 = 6.6672 < 8.6674] w=0.4243 to align # Constraint # added constraint: constraint((T0287)L144.CB, (T0287)T170.CB) [> 2.9915 = 4.9858 < 6.4815] w=0.4243 to align # Constraint # added constraint: constraint((T0287)L144.CB, (T0287)N167.CB) [> 3.8646 = 6.4410 < 8.3733] w=0.4243 to align # Constraint # added constraint: constraint((T0287)I142.CB, (T0287)Y174.CB) [> 4.0134 = 6.6890 < 8.6957] w=0.4243 to align # Constraint # added constraint: constraint((T0287)I142.CB, (T0287)T170.CB) [> 3.8417 = 6.4028 < 8.3236] w=0.4243 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)Y177.CB) [> 4.2482 = 7.0803 < 9.2043] w=0.4243 to align # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)V81.CB) [> 4.4798 = 7.4663 < 9.7062] w=0.4243 to align # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)L99.CB) [> 4.7595 = 7.9325 < 10.3123] w=0.4243 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)M96.CB) [> 2.6557 = 4.4262 < 5.7541] w=0.4243 to align # Constraint # added constraint: constraint((T0287)I135.CB, (T0287)L144.CB) [> 2.3624 = 3.9373 < 5.1185] w=0.4243 to align # Constraint # added constraint: constraint((T0287)M47.CB, (T0287)V64.CB) [> 3.9861 = 6.6435 < 8.6365] w=0.4093 to align # Constraint # added constraint: constraint((T0287)I142.CB, (T0287)K153.CB) [> 3.9147 = 6.5246 < 8.4819] w=0.3953 to align # Constraint # added constraint: constraint((T0287)L22.CB, (T0287)M47.CB) [> 2.9862 = 4.9771 < 6.4702] w=0.3946 to align # Constraint # added constraint: constraint((T0287)I23.CB, (T0287)M47.CB) [> 3.8000 = 6.3333 < 8.2333] w=0.3946 to align # Constraint # added constraint: constraint((T0287)Q53.CB, (T0287)Y72.CB) [> 4.6083 = 7.6805 < 9.9847] w=0.3946 to align # Constraint # added constraint: constraint((T0287)I171.CB, (T0287)K194.CB) [> 3.9086 = 6.5143 < 8.4685] w=0.3946 to align # Constraint # added constraint: constraint((T0287)A166.CB, (T0287)K194.CB) [> 3.8117 = 6.3528 < 8.2586] w=0.3946 to align # Constraint # added constraint: constraint((T0287)A101.CB, (T0287)F124.CB) [> 4.4884 = 7.4807 < 9.7249] w=0.3946 to align # Constraint # added constraint: constraint((T0287)S78.CB, (T0287)V87.CB) [> 2.3148 = 3.8579 < 5.0153] w=0.3946 to align # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L32.CB) [> 4.6877 = 7.8127 < 10.1566] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)I41.CB) [> 3.9020 = 6.5034 < 8.4544] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)I44.CB) [> 4.5978 = 7.6630 < 9.9618] w=0.3645 to align # Constraint # added constraint: constraint((T0287)S10.CB, (T0287)L31.CB) [> 4.6205 = 7.7008 < 10.0111] w=0.3645 to align # Constraint # added constraint: constraint((T0287)M11.CB, (T0287)L90.CB) [> 3.3996 = 5.6660 < 7.3658] w=0.3645 to align # Constraint # added constraint: constraint((T0287)M11.CB, (T0287)E94.CB) [> 3.6216 = 6.0361 < 7.8469] w=0.3645 to align # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L22.CB) [> 3.4720 = 5.7866 < 7.5226] w=0.3645 to align # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)I23.CB) [> 4.6417 = 7.7362 < 10.0571] w=0.3645 to align # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)K86.CB) [> 4.4970 = 7.4950 < 9.7435] w=0.3645 to align # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)V87.CB) [> 3.4225 = 5.7042 < 7.4154] w=0.3645 to align # Constraint # added constraint: constraint((T0287)I12.CB, (T0287)L90.CB) [> 2.8359 = 4.7264 < 6.1443] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F9.CB, (T0287)L31.CB) [> 4.7339 = 7.8898 < 10.2568] w=0.3645 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L90.CB) [> 4.3036 = 7.1727 < 9.3246] w=0.3645 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)I41.CB) [> 4.5208 = 7.5347 < 9.7951] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)I102.CB) [> 4.3374 = 7.2290 < 9.3977] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F51.CB, (T0287)V64.CB) [> 3.7594 = 6.2657 < 8.1454] w=0.3645 to align # Constraint # added constraint: constraint((T0287)F50.CB, (T0287)V64.CB) [> 3.2915 = 5.4859 < 7.1316] w=0.3645 to align # Constraint # added constraint: constraint((T0287)S25.CB, (T0287)I79.CB) [> 3.4981 = 5.8301 < 7.5791] w=0.3645 to align # Constraint # added constraint: constraint((T0287)A13.CB, (T0287)L22.CB) [> 3.8269 = 6.3782 < 8.2916] w=0.3645 to align # Constraint # added constraint: constraint((T0287)A13.CB, (T0287)I23.CB) [> 2.3356 = 3.8927 < 5.0605] w=0.3645 to align # Constraint # added constraint: constraint((T0287)T95.CB, (T0287)L154.CB) [> 3.5651 = 5.9418 < 7.7243] w=0.3506 to align # Constraint # added constraint: constraint((T0287)M96.CB, (T0287)S134.CB) [> 4.4484 = 7.4140 < 9.6382] w=0.3506 to align # Constraint # added constraint: constraint((T0287)L98.CB, (T0287)L181.CB) [> 2.9416 = 4.9026 < 6.3734] w=0.3506 to align # Constraint # added constraint: constraint((T0287)L98.CB, (T0287)L182.CB) [> 4.3287 = 7.2145 < 9.3789] w=0.3506 to align # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)S134.CB) [> 4.6037 = 7.6728 < 9.9747] w=0.3506 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L144.CB) [> 2.3471 = 3.9118 < 5.0853] w=0.3506 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L149.CB) [> 3.5102 = 5.8504 < 7.6055] w=0.3506 to align # Constraint # added constraint: constraint((T0287)L91.CB, (T0287)L154.CB) [> 4.4366 = 7.3943 < 9.6126] w=0.3506 to align # Constraint # added constraint: constraint((T0287)M133.CB, (T0287)M157.CB) [> 4.5529 = 7.5882 < 9.8646] w=0.3506 to align # Constraint # added constraint: constraint((T0287)M133.CB, (T0287)N167.CB) [> 4.4369 = 7.3948 < 9.6132] w=0.3506 to align # Constraint # added constraint: constraint((T0287)M133.CB, (T0287)I171.CB) [> 4.5386 = 7.5644 < 9.8337] w=0.3506 to align # Constraint # added constraint: constraint((T0287)S134.CB, (T0287)V156.CB) [> 3.9430 = 6.5716 < 8.5431] w=0.3506 to align # Constraint # added constraint: constraint((T0287)I135.CB, (T0287)V156.CB) [> 3.3780 = 5.6299 < 7.3189] w=0.3506 to align # Constraint # added constraint: constraint((T0287)E143.CB, (T0287)L152.CB) [> 4.1083 = 6.8471 < 8.9012] w=0.3506 to align # Constraint # added constraint: constraint((T0287)V156.CB, (T0287)I171.CB) [> 4.3836 = 7.3061 < 9.4979] w=0.3506 to align # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)V156.CB) [> 4.3605 = 7.2675 < 9.4477] w=0.3506 to align # Constraint # added constraint: constraint((T0287)H100.CB, (T0287)M133.CB) [> 4.2343 = 7.0572 < 9.1744] w=0.3506 to align # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)Y177.CB) [> 4.6263 = 7.7105 < 10.0237] w=0.3506 to align # Constraint # added constraint: constraint((T0287)I102.CB, (T0287)V178.CB) [> 4.2034 = 7.0057 < 9.1074] w=0.3506 to align # Constraint # added constraint: constraint((T0287)N105.CB, (T0287)A166.CB) [> 4.6665 = 7.7775 < 10.1107] w=0.3506 to align # Constraint # added constraint: constraint((T0287)M138.CB, (T0287)L181.CB) [> 3.3714 = 5.6190 < 7.3047] w=0.3287 to align # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)F110.CB) [> 3.7400 = 6.2333 < 8.1033] w=0.3198 to align # Constraint # added constraint: constraint((T0287)I129.CB, (T0287)Y145.CB) [> 4.5117 = 7.5194 < 9.7753] w=0.2964 to align # Constraint # added constraint: constraint((T0287)M130.CB, (T0287)Y145.CB) [> 3.8518 = 6.4196 < 8.3455] w=0.2964 to align # Constraint # added constraint: constraint((T0287)I41.CB, (T0287)V75.CB) [> 2.7808 = 4.6347 < 6.0251] w=0.2809 to align # Constraint # added constraint: constraint((T0287)M54.CB, (T0287)Y68.CB) [> 3.9419 = 6.5698 < 8.5407] w=0.2776 to align # Constraint # added constraint: constraint((T0287)F113.CB, (T0287)M157.CB) [> 4.4234 = 7.3724 < 9.5841] w=0.2762 to align # Constraint # added constraint: constraint((T0287)F113.CB, (T0287)F155.CB) [> 3.5737 = 5.9561 < 7.7429] w=0.2762 to align # Constraint # added constraint: constraint((T0287)L109.CB, (T0287)M157.CB) [> 3.7836 = 6.3059 < 8.1977] w=0.2762 to align # Constraint # added constraint: constraint((T0287)F108.CB, (T0287)M157.CB) [> 3.8236 = 6.3726 < 8.2844] w=0.2762 to align # Constraint # added constraint: constraint((T0287)P106.CB, (T0287)M138.CB) [> 4.4067 = 7.3444 < 9.5478] w=0.2762 to align # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)F84.CB) [> 3.0573 = 5.0956 < 6.6243] w=0.2762 to align # Constraint # added constraint: constraint((T0287)R136.CB, (T0287)L149.CB) [> 3.7838 = 6.3063 < 8.1981] w=0.2762 to align # Constraint # added constraint: constraint((T0287)F131.CB, (T0287)V156.CB) [> 4.6824 = 7.8039 < 10.1451] w=0.2762 to align # Constraint # added constraint: constraint((T0287)L118.CB, (T0287)K132.CB) [> 4.6650 = 7.7750 < 10.1075] w=0.2762 to align # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)V156.CB) [> 3.5608 = 5.9347 < 7.7151] w=0.2762 to align # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)T158.CB) [> 4.5359 = 7.5599 < 9.8279] w=0.2762 to align # Constraint # added constraint: constraint((T0287)F125.CB, (T0287)E161.CB) [> 2.6028 = 4.3380 < 5.6394] w=0.2762 to align # Constraint # added constraint: constraint((T0287)I120.CB, (T0287)I129.CB) [> 3.1495 = 5.2492 < 6.8239] w=0.2731 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)L118.CB) [> 3.9509 = 6.5849 < 8.5604] w=0.2368 to align # Constraint # added constraint: constraint((T0287)T95.CB, (T0287)I129.CB) [> 4.0348 = 6.7246 < 8.7420] w=0.2284 to align # Constraint # added constraint: constraint((T0287)M96.CB, (T0287)F113.CB) [> 3.6169 = 6.0282 < 7.8367] w=0.2284 to align # Constraint # added constraint: constraint((T0287)M96.CB, (T0287)I120.CB) [> 3.8352 = 6.3920 < 8.3096] w=0.2284 to align # Constraint # added constraint: constraint((T0287)L99.CB, (T0287)L122.CB) [> 3.4866 = 5.8110 < 7.5543] w=0.2284 to align # Constraint # added constraint: constraint((T0287)M69.CB, (T0287)V162.CB) [> 4.4517 = 7.4196 < 9.6454] w=0.2284 to align # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)M191.CB) [> 4.4410 = 7.4017 < 9.6222] w=0.2284 to align # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)V196.CB) [> 4.3948 = 7.3246 < 9.5220] w=0.2284 to align # Constraint # added constraint: constraint((T0287)M183.CB, (T0287)E193.CB) [> 4.0427 = 6.7378 < 8.7591] w=0.2284 to align # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)N148.CB) [> 3.8793 = 6.4655 < 8.4051] w=0.2284 to align # Constraint # added constraint: constraint((T0287)H48.CB, (T0287)L61.CB) [> 4.4888 = 7.4814 < 9.7258] w=0.2117 to align # Constraint # added constraint: constraint((T0287)V64.CB, (T0287)I76.CB) [> 4.5851 = 7.6418 < 9.9343] w=0.2117 to align # Constraint # added constraint: constraint((T0287)M69.CB, (T0287)L151.CB) [> 4.6383 = 7.7305 < 10.0497] w=0.1831 to align # Constraint # added constraint: constraint((T0287)A60.CB, (T0287)L98.CB) [> 4.1002 = 6.8337 < 8.8839] w=0.1772 to align # Constraint # added constraint: constraint((T0287)L98.CB, (T0287)F110.CB) [> 3.7637 = 6.2728 < 8.1546] w=0.1772 to align # Constraint # added constraint: constraint((T0287)L61.CB, (T0287)L109.CB) [> 3.3547 = 5.5912 < 7.2685] w=0.1772 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)M69.CB) [> 3.5286 = 5.8810 < 7.6452] w=0.1583 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L65.CB) [> 4.2039 = 7.0064 < 9.1084] w=0.1583 to align # Constraint # added constraint: constraint((T0287)Y68.CB, (T0287)M138.CB) [> 4.2801 = 7.1334 < 9.2735] w=0.1426 to align # Constraint # added constraint: constraint((T0287)R73.CB, (T0287)L149.CB) [> 4.2859 = 7.1432 < 9.2862] w=0.1426 to align # Constraint # added constraint: constraint((T0287)K77.CB, (T0287)L151.CB) [> 4.4491 = 7.4152 < 9.6398] w=0.1426 to align # Constraint # added constraint: constraint((T0287)L154.CB, (T0287)L181.CB) [> 4.6013 = 7.6687 < 9.9694] w=0.1426 to align # Constraint # added constraint: constraint((T0287)K153.CB, (T0287)L182.CB) [> 4.6639 = 7.7732 < 10.1052] w=0.1426 to align # Constraint # added constraint: constraint((T0287)L118.CB, (T0287)M138.CB) [> 3.2203 = 5.3672 < 6.9773] w=0.1426 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)H100.CB) [> 4.4710 = 7.4517 < 9.6873] w=0.1426 to align # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)M130.CB) [> 4.2533 = 7.0888 < 9.2154] w=0.1389 to align # Constraint # added constraint: constraint((T0287)M11.CB, (T0287)L22.CB) [> 3.5418 = 5.9029 < 7.6738] w=0.1383 to align # Constraint # added constraint: constraint((T0287)M11.CB, (T0287)N29.CB) [> 4.6038 = 7.6729 < 9.9748] w=0.1383 to align # Constraint # added constraint: constraint((T0287)P150.CB, (T0287)L168.CB) [> 3.5972 = 5.9954 < 7.7940] w=0.1383 to align # Constraint # added constraint: constraint((T0287)L152.CB, (T0287)L168.CB) [> 4.7243 = 7.8738 < 10.2360] w=0.1383 to align # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L152.CB) [> 4.4115 = 7.3525 < 9.5582] w=0.1383 to align # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)P106.CB) [> 4.6034 = 7.6724 < 9.9741] w=0.1383 to align # Constraint # added constraint: constraint((T0287)M130.CB, (T0287)F155.CB) [> 3.9909 = 6.6515 < 8.6469] w=0.1182 to align # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)Y165.CB) [> 4.5612 = 7.6020 < 9.8826] w=0.1135 to align # Constraint # added constraint: constraint((T0287)M69.CB, (T0287)I79.CB) [> 2.3897 = 3.9829 < 5.1777] w=0.1020 to align # Constraint # added constraint: constraint((T0287)L65.CB, (T0287)L168.CB) [> 3.5160 = 5.8600 < 7.6180] w=0.1004 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L22.CB) [> 4.0138 = 6.6897 < 8.6966] w=0.1004 to align # Constraint # added constraint: constraint((T0287)M133.CB, (T0287)F185.CB) [> 4.6836 = 7.8060 < 10.1478] w=0.1004 to align # Constraint # added constraint: constraint((T0287)I117.CB, (T0287)F185.CB) [> 3.9200 = 6.5333 < 8.4933] w=0.1004 to align # Constraint # added constraint: constraint((T0287)I142.CB, (T0287)A166.CB) [> 3.7714 = 6.2857 < 8.1714] w=0.1004 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)M183.CB) [> 3.6667 = 6.1112 < 7.9446] w=0.1004 to align # Constraint # added constraint: constraint((T0287)F84.CB, (T0287)R179.CB) [> 2.8468 = 4.7447 < 6.1681] w=0.1004 to align # Constraint # added constraint: constraint((T0287)K83.CB, (T0287)M183.CB) [> 4.3962 = 7.3271 < 9.5252] w=0.1004 to align # Constraint # added constraint: constraint((T0287)K83.CB, (T0287)L182.CB) [> 4.3424 = 7.2374 < 9.4086] w=0.1004 to align # Constraint # added constraint: constraint((T0287)L91.CB, (T0287)L187.CB) [> 4.2772 = 7.1287 < 9.2673] w=0.0942 to align # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)L109.CB) [> 4.3791 = 7.2986 < 9.4881] w=0.0942 to align # Constraint # added constraint: constraint((T0287)I76.CB, (T0287)F131.CB) [> 2.6637 = 4.4394 < 5.7713] w=0.0942 to align # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)M138.CB) [> 4.7118 = 7.8529 < 10.2088] w=0.0942 to align # Constraint # added constraint: constraint((T0287)M130.CB, (T0287)V196.CB) [> 3.4025 = 5.6709 < 7.3722] w=0.0942 to align # Constraint # added constraint: constraint((T0287)I135.CB, (T0287)V196.CB) [> 4.2819 = 7.1366 < 9.2776] w=0.0942 to align # Constraint # added constraint: constraint((T0287)Y145.CB, (T0287)L187.CB) [> 4.3195 = 7.1991 < 9.3589] w=0.0942 to align # Constraint # added constraint: constraint((T0287)L149.CB, (T0287)L187.CB) [> 4.0652 = 6.7754 < 8.8080] w=0.0942 to align # Constraint # added constraint: constraint((T0287)A101.CB, (T0287)L187.CB) [> 3.7598 = 6.2663 < 8.1462] w=0.0942 to align # Constraint # added constraint: constraint((T0287)L122.CB, (T0287)F131.CB) [> 4.0147 = 6.6912 < 8.6985] w=0.0942 to align # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)M138.CB) [> 2.9982 = 4.9970 < 6.4961] w=0.0942 to align # Constraint # added constraint: constraint((T0287)V75.CB, (T0287)K169.CB) [> 3.8481 = 6.4136 < 8.3376] w=0.0734 to align # Constraint # added constraint: constraint((T0287)H55.CB, (T0287)F121.CB) [> 2.8261 = 4.7101 < 6.1231] w=0.0734 to align # Constraint # added constraint: constraint((T0287)A60.CB, (T0287)I79.CB) [> 4.4042 = 7.3403 < 9.5424] w=0.0734 to align # Constraint # added constraint: constraint((T0287)K132.CB, (T0287)L154.CB) [> 2.8906 = 4.8176 < 6.2629] w=0.0734 to align # Constraint # added constraint: constraint((T0287)F131.CB, (T0287)M157.CB) [> 4.2291 = 7.0485 < 9.1630] w=0.0734 to align # Constraint # added constraint: constraint((T0287)I129.CB, (T0287)T158.CB) [> 4.6159 = 7.6932 < 10.0012] w=0.0734 to align # Constraint # added constraint: constraint((T0287)F121.CB, (T0287)F131.CB) [> 4.1031 = 6.8385 < 8.8900] w=0.0680 to align # Constraint # added constraint: constraint((T0287)Y68.CB, (T0287)I120.CB) [> 3.3628 = 5.6046 < 7.2860] w=0.0448 to align # Constraint # added constraint: constraint((T0287)M5.CB, (T0287)P150.CB) [> 3.9151 = 6.5251 < 8.4826] w=0.0448 to align # Constraint # added constraint: constraint((T0287)L8.CB, (T0287)L151.CB) [> 4.6391 = 7.7319 < 10.0515] w=0.0448 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0287/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0287/decoys/ # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file short.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_FLEX_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)P106.CA and (T0287)F110.CA only 0 apart, marking (T0287)F110.CA as missing WARNING: atoms too close: (T0287)I120.CA and (T0287)P123.CA only 0 apart, marking (T0287)P123.CA as missing WARNING: atoms too close: (T0287)F121.CA and (T0287)K132.CA only 0 apart, marking (T0287)K132.CA as missing WARNING: atoms too close: (T0287)L122.CA and (T0287)M133.CA only 0 apart, marking (T0287)M133.CA as missing WARNING: atoms too close: (T0287)T147.CA and (T0287)E160.CA only 0 apart, marking (T0287)E160.CA as missing WARNING: atoms too close: (T0287)N148.CA and (T0287)E161.CA only 0 apart, marking (T0287)E161.CA as missing WARNING: atoms too close: (T0287)M157.CA and (T0287)V162.CA only 0 apart, marking (T0287)V162.CA as missing WARNING: atoms too close: (T0287)T158.CA and (T0287)N163.CA only 0 apart, marking (T0287)N163.CA as missing WARNING: atoms too close: (T0287)D159.CA and (T0287)A166.CA only 0 apart, marking (T0287)A166.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)I171.CA only 0 apart, marking (T0287)I171.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)E172.CA only 0 apart, marking (T0287)E172.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)L32.CA and (T0287)N33.CA only 0 apart, marking (T0287)N33.CA as missing WARNING: atoms too close: (T0287)M138.CA and (T0287)L154.CA only 0 apart, marking (T0287)L154.CA as missing WARNING: atoms too close: (T0287)D139.CA and (T0287)D159.CA only 0 apart, marking (T0287)D159.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)N167.CA only 0 apart, marking (T0287)N167.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)L168.CA only 0 apart, marking (T0287)L168.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)D71.CA and (T0287)Y72.CA only 0 apart, marking (T0287)Y72.CA as missing WARNING: atoms too close: (T0287)L90.CA and (T0287)E97.CA only 0 apart, marking (T0287)E97.CA as missing WARNING: atoms too close: (T0287)L91.CA and (T0287)L98.CA only 0 apart, marking (T0287)L98.CA as missing WARNING: atoms too close: (T0287)E92.CA and (T0287)L99.CA only 0 apart, marking (T0287)L99.CA as missing WARNING: atoms too close: (T0287)S93.CA and (T0287)H100.CA only 0 apart, marking (T0287)H100.CA as missing WARNING: atoms too close: (T0287)F185.CA and (T0287)D186.CA only 0 apart, marking (T0287)D186.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)P106.CA and (T0287)F110.CA only 0 apart, marking (T0287)F110.CA as missing WARNING: atoms too close: (T0287)I120.CA and (T0287)P123.CA only 0 apart, marking (T0287)P123.CA as missing WARNING: atoms too close: (T0287)F121.CA and (T0287)K132.CA only 0 apart, marking (T0287)K132.CA as missing WARNING: atoms too close: (T0287)L122.CA and (T0287)M133.CA only 0 apart, marking (T0287)M133.CA as missing WARNING: atoms too close: (T0287)T147.CA and (T0287)E160.CA only 0 apart, marking (T0287)E160.CA as missing WARNING: atoms too close: (T0287)N148.N and (T0287)E161.N only 0 apart, marking (T0287)E161.N as missing WARNING: atoms too close: (T0287)N148.CA and (T0287)E161.CA only 0 apart, marking (T0287)E161.CA as missing WARNING: atoms too close: (T0287)N148.CB and (T0287)E161.CB only 0 apart, marking (T0287)E161.CB as missing WARNING: atoms too close: (T0287)N148.C and (T0287)E161.C only 0 apart, marking (T0287)E161.C as missing WARNING: atoms too close: (T0287)M157.CA and (T0287)V162.CA only 0 apart, marking (T0287)V162.CA as missing WARNING: atoms too close: (T0287)T158.CA and (T0287)N163.CA only 0 apart, marking (T0287)N163.CA as missing WARNING: atoms too close: (T0287)D159.CA and (T0287)A166.CA only 0 apart, marking (T0287)D159.CA as missing WARNING: atoms too close: (T0287)F164.CA and (T0287)I171.CA only 0 apart, marking (T0287)I171.CA as missing WARNING: atoms too close: (T0287)Y165.CA and (T0287)E172.CA only 0 apart, marking (T0287)E172.CA as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0287)K38.O and (T0287)K39.N only 0 apart, marking (T0287)K39.N as missing WARNING: atoms too close: (T0287)M130.O and (T0287)F131.N only 0 apart, marking (T0287)F131.N as missing # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 674 has residue number 1 < previous residue 195 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0287 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 239 model score 1.9023 model score 1.9673 model score 2.0201 model score 1.8030 model score 1.9669 model score 1.6649 model score 2.0627 model score 2.2003 model score 2.3962 model score 2.1820 model score 2.1919 model score 2.0191 model score 2.1773 model score 2.5636 model score 2.1494 model score 2.4311 model score 2.0191 model score 2.1773 model score 2.5636 model score 2.1494 model score 2.4311 model score 1.9401 model score 2.0839 model score 2.1052 model score 1.7092 model score 1.6103 model score 1.4843 model score 1.3751 model score 1.5426 model score 1.4782 model score 1.6899 model score 2.1041 model score 1.8814 model score 1.6894 model score 1.8156 model score 1.5715 model score 1.5262 model score 2.2613 model score 2.2491 model score 2.1518 model score 2.1903 model score 2.1441 model score 1.9598 model score 2.1709 model score 1.5603 model score 1.5969 model score 1.8751 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2491 model score 2.1903 model score 2.1441 model score 2.2597 model score 2.2806 model score 1.8570 model score 2.1405 model score 2.2783 model score 2.0719 model score 2.0333 model score 1.7086 model score 1.7653 model score 1.9804 model score 2.0518 model score 1.7876 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2024 model score 2.0354 model score 1.2963 model score 1.4351 model score 1.9634 model score 1.8895 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0268 model score 1.7838 model score 2.2830 model score 2.1716 model score 2.2543 model score 2.2209 model score 2.6785 model score 2.6785 model score 2.2196 model score 2.2196 model score 2.2196 model score 1.5237 model score 1.5634 model score 1.3815 model score 1.6847 model score 1.4555 model score 1.9178 model score 1.9757 model score 1.7813 model score 1.9674 model score 2.0336 model score 2.1221 model score 2.1824 model score 1.9748 model score 2.0278 model score 2.7563 model score 1.8497 model score 1.5262 model score 1.7296 model score 1.6452 model score 1.6584 model score 1.9178 model score 1.9617 model score 2.0718 model score 1.9205 model score 2.0376 model score 1.9813 model score 2.0045 model score 2.0848 model score 1.9806 model score 1.9029 model score 2.1374 model score 2.1227 model score 2.1225 model score 2.0277 model score 1.8310 model score 1.8700 model score 1.4928 model score 1.8164 model score 1.5973 model score 1.6161 model score 1.9752 model score 1.7326 model score 2.0909 model score 2.1309 model score 2.0998 model score 2.1447 model score 2.0741 model score 1.7671 model score 1.9752 model score 1.6487 model score 2.0667 model score 1.8994 model score 1.9152 model score 1.7992 model score 1.9636 model score 2.0728 model score 2.0751 model score 1.7175 model score 1.8766 model score 1.9360 model score 1.7876 model score 1.7068 model score 1.8154 model score 1.9390 model score 1.8008 model score 1.8110 model score 1.6581 model score 1.9023 model score 1.9673 model score 2.0201 model score 1.8030 model score 1.9669 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9747 model score 1.0509 model score 1.0002 model score 1.4652 model score 1.2417 model score 1.9926 model score 1.8117 model score 2.1789 model score 1.9636 model score 1.8338 model score 2.0195 model score 2.2689 model score 2.0881 model score 1.8046 model score 2.1967 model score 1.9422 model score 2.0702 model score 1.8291 model score 2.2257 model score 1.8359 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9506 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9095 model score 1.8580 model score 1.5745 model score 1.5498 model score 1.5943 model score 2.0209 model score 2.0830 model score 1.7417 model score 1.6214 model score 1.9686 model score 1.7632 model score 1.7331 model score 1.9100 model score 1.8563 model score 1.7690 model score 1.8042 model score 1.9418 model score 1.9102 model score 2.0051 model score 2.1430 model score 2.1038 model score 2.1040 model score 2.0831 model score 1.6603 model score 1.8174 model score 1.4544 model score 1.7965 model score 1.2046 model score 1.7076 model score 1.6994 weight: 0.5377 eval: 1.9023 min: 1.0002 max: 2.7563 weight: 0.5044 eval: 1.9673 min: 1.0002 max: 2.7563 weight: 0.4773 eval: 2.0201 min: 1.0002 max: 2.7563 weight: 0.5886 eval: 1.8030 min: 1.0002 max: 2.7563 weight: 0.5046 eval: 1.9669 min: 1.0002 max: 2.7563 weight: 0.6593 eval: 1.6649 min: 1.0002 max: 2.7563 weight: 0.4555 eval: 2.0627 min: 1.0002 max: 2.7563 weight: 0.3849 eval: 2.2003 min: 1.0002 max: 2.7563 weight: 0.2846 eval: 2.3962 min: 1.0002 max: 2.7563 weight: 0.3944 eval: 2.1820 min: 1.0002 max: 2.7563 weight: 0.3893 eval: 2.1919 min: 1.0002 max: 2.7563 weight: 0.4778 eval: 2.0191 min: 1.0002 max: 2.7563 weight: 0.3968 eval: 2.1773 min: 1.0002 max: 2.7563 weight: 0.1988 eval: 2.5636 min: 1.0002 max: 2.7563 weight: 0.4111 eval: 2.1494 min: 1.0002 max: 2.7563 weight: 0.2667 eval: 2.4311 min: 1.0002 max: 2.7563 weight: 0.4778 eval: 2.0191 min: 1.0002 max: 2.7563 weight: 0.3968 eval: 2.1773 min: 1.0002 max: 2.7563 weight: 0.1988 eval: 2.5636 min: 1.0002 max: 2.7563 weight: 0.4111 eval: 2.1494 min: 1.0002 max: 2.7563 weight: 0.2667 eval: 2.4311 min: 1.0002 max: 2.7563 weight: 0.5183 eval: 1.9401 min: 1.0002 max: 2.7563 weight: 0.4446 eval: 2.0839 min: 1.0002 max: 2.7563 weight: 0.4337 eval: 2.1052 min: 1.0002 max: 2.7563 weight: 0.6366 eval: 1.7092 min: 1.0002 max: 2.7563 weight: 0.6873 eval: 1.6103 min: 1.0002 max: 2.7563 weight: 0.7519 eval: 1.4843 min: 1.0002 max: 2.7563 weight: 0.8079 eval: 1.3751 min: 1.0002 max: 2.7563 weight: 0.7220 eval: 1.5426 min: 1.0002 max: 2.7563 weight: 0.7550 eval: 1.4782 min: 1.0002 max: 2.7563 weight: 0.6465 eval: 1.6899 min: 1.0002 max: 2.7563 weight: 0.4343 eval: 2.1041 min: 1.0002 max: 2.7563 weight: 0.5484 eval: 1.8814 min: 1.0002 max: 2.7563 weight: 0.6468 eval: 1.6894 min: 1.0002 max: 2.7563 weight: 0.5821 eval: 1.8156 min: 1.0002 max: 2.7563 weight: 0.7072 eval: 1.5715 min: 1.0002 max: 2.7563 weight: 0.7304 eval: 1.5262 min: 1.0002 max: 2.7563 weight: 0.3537 eval: 2.2613 min: 1.0002 max: 2.7563 weight: 0.3600 eval: 2.2491 min: 1.0002 max: 2.7563 weight: 0.4098 eval: 2.1518 min: 1.0002 max: 2.7563 weight: 0.3901 eval: 2.1903 min: 1.0002 max: 2.7563 weight: 0.4138 eval: 2.1441 min: 1.0002 max: 2.7563 weight: 0.5082 eval: 1.9598 min: 1.0002 max: 2.7563 weight: 0.4000 eval: 2.1709 min: 1.0002 max: 2.7563 weight: 0.7129 eval: 1.5603 min: 1.0002 max: 2.7563 weight: 0.6942 eval: 1.5969 min: 1.0002 max: 2.7563 weight: 0.5516 eval: 1.8751 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.3600 eval: 2.2491 min: 1.0002 max: 2.7563 weight: 0.3901 eval: 2.1903 min: 1.0002 max: 2.7563 weight: 0.4138 eval: 2.1441 min: 1.0002 max: 2.7563 weight: 0.3545 eval: 2.2597 min: 1.0002 max: 2.7563 weight: 0.3438 eval: 2.2806 min: 1.0002 max: 2.7563 weight: 0.5609 eval: 1.8570 min: 1.0002 max: 2.7563 weight: 0.4156 eval: 2.1405 min: 1.0002 max: 2.7563 weight: 0.3450 eval: 2.2783 min: 1.0002 max: 2.7563 weight: 0.4508 eval: 2.0719 min: 1.0002 max: 2.7563 weight: 0.4706 eval: 2.0333 min: 1.0002 max: 2.7563 weight: 0.6369 eval: 1.7086 min: 1.0002 max: 2.7563 weight: 0.6079 eval: 1.7653 min: 1.0002 max: 2.7563 weight: 0.4976 eval: 1.9804 min: 1.0002 max: 2.7563 weight: 0.4611 eval: 2.0518 min: 1.0002 max: 2.7563 weight: 0.5965 eval: 1.7876 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.3839 eval: 2.2024 min: 1.0002 max: 2.7563 weight: 0.4695 eval: 2.0354 min: 1.0002 max: 2.7563 weight: 0.8483 eval: 1.2963 min: 1.0002 max: 2.7563 weight: 0.7771 eval: 1.4351 min: 1.0002 max: 2.7563 weight: 0.5064 eval: 1.9634 min: 1.0002 max: 2.7563 weight: 0.5442 eval: 1.8895 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.4739 eval: 2.0268 min: 1.0002 max: 2.7563 weight: 0.5984 eval: 1.7838 min: 1.0002 max: 2.7563 weight: 0.3426 eval: 2.2830 min: 1.0002 max: 2.7563 weight: 0.3997 eval: 2.1716 min: 1.0002 max: 2.7563 weight: 0.3573 eval: 2.2543 min: 1.0002 max: 2.7563 weight: 0.3744 eval: 2.2209 min: 1.0002 max: 2.7563 weight: 0.1399 eval: 2.6785 min: 1.0002 max: 2.7563 weight: 0.1399 eval: 2.6785 min: 1.0002 max: 2.7563 weight: 0.3751 eval: 2.2196 min: 1.0002 max: 2.7563 weight: 0.3751 eval: 2.2196 min: 1.0002 max: 2.7563 weight: 0.3751 eval: 2.2196 min: 1.0002 max: 2.7563 weight: 0.7317 eval: 1.5237 min: 1.0002 max: 2.7563 weight: 0.7114 eval: 1.5634 min: 1.0002 max: 2.7563 weight: 0.8046 eval: 1.3815 min: 1.0002 max: 2.7563 weight: 0.6492 eval: 1.6847 min: 1.0002 max: 2.7563 weight: 0.7667 eval: 1.4555 min: 1.0002 max: 2.7563 weight: 0.5297 eval: 1.9178 min: 1.0002 max: 2.7563 weight: 0.5001 eval: 1.9757 min: 1.0002 max: 2.7563 weight: 0.5997 eval: 1.7813 min: 1.0002 max: 2.7563 weight: 0.5043 eval: 1.9674 min: 1.0002 max: 2.7563 weight: 0.4704 eval: 2.0336 min: 1.0002 max: 2.7563 weight: 0.4250 eval: 2.1221 min: 1.0002 max: 2.7563 weight: 0.3941 eval: 2.1824 min: 1.0002 max: 2.7563 weight: 0.5005 eval: 1.9748 min: 1.0002 max: 2.7563 weight: 0.4734 eval: 2.0278 min: 1.0002 max: 2.7563 weight: 0.1000 eval: 2.7563 min: 1.0002 max: 2.7563 weight: 0.5647 eval: 1.8497 min: 1.0002 max: 2.7563 weight: 0.7304 eval: 1.5262 min: 1.0002 max: 2.7563 weight: 0.6262 eval: 1.7296 min: 1.0002 max: 2.7563 weight: 0.6694 eval: 1.6452 min: 1.0002 max: 2.7563 weight: 0.6627 eval: 1.6584 min: 1.0002 max: 2.7563 weight: 0.5297 eval: 1.9178 min: 1.0002 max: 2.7563 weight: 0.5072 eval: 1.9617 min: 1.0002 max: 2.7563 weight: 0.4508 eval: 2.0718 min: 1.0002 max: 2.7563 weight: 0.5284 eval: 1.9205 min: 1.0002 max: 2.7563 weight: 0.4683 eval: 2.0376 min: 1.0002 max: 2.7563 weight: 0.4972 eval: 1.9813 min: 1.0002 max: 2.7563 weight: 0.4853 eval: 2.0045 min: 1.0002 max: 2.7563 weight: 0.4442 eval: 2.0848 min: 1.0002 max: 2.7563 weight: 0.4976 eval: 1.9806 min: 1.0002 max: 2.7563 weight: 0.5374 eval: 1.9029 min: 1.0002 max: 2.7563 weight: 0.4172 eval: 2.1374 min: 1.0002 max: 2.7563 weight: 0.4247 eval: 2.1227 min: 1.0002 max: 2.7563 weight: 0.4248 eval: 2.1225 min: 1.0002 max: 2.7563 weight: 0.4734 eval: 2.0277 min: 1.0002 max: 2.7563 weight: 0.5742 eval: 1.8310 min: 1.0002 max: 2.7563 weight: 0.5543 eval: 1.8700 min: 1.0002 max: 2.7563 weight: 0.7476 eval: 1.4928 min: 1.0002 max: 2.7563 weight: 0.5817 eval: 1.8164 min: 1.0002 max: 2.7563 weight: 0.6940 eval: 1.5973 min: 1.0002 max: 2.7563 weight: 0.6844 eval: 1.6161 min: 1.0002 max: 2.7563 weight: 0.5003 eval: 1.9752 min: 1.0002 max: 2.7563 weight: 0.6246 eval: 1.7326 min: 1.0002 max: 2.7563 weight: 0.4410 eval: 2.0909 min: 1.0002 max: 2.7563 weight: 0.4205 eval: 2.1309 min: 1.0002 max: 2.7563 weight: 0.4365 eval: 2.0998 min: 1.0002 max: 2.7563 weight: 0.4135 eval: 2.1447 min: 1.0002 max: 2.7563 weight: 0.4496 eval: 2.0741 min: 1.0002 max: 2.7563 weight: 0.6070 eval: 1.7671 min: 1.0002 max: 2.7563 weight: 0.5003 eval: 1.9752 min: 1.0002 max: 2.7563 weight: 0.6676 eval: 1.6487 min: 1.0002 max: 2.7563 weight: 0.4534 eval: 2.0667 min: 1.0002 max: 2.7563 weight: 0.5391 eval: 1.8994 min: 1.0002 max: 2.7563 weight: 0.5311 eval: 1.9152 min: 1.0002 max: 2.7563 weight: 0.5905 eval: 1.7992 min: 1.0002 max: 2.7563 weight: 0.5063 eval: 1.9636 min: 1.0002 max: 2.7563 weight: 0.4503 eval: 2.0728 min: 1.0002 max: 2.7563 weight: 0.4491 eval: 2.0751 min: 1.0002 max: 2.7563 weight: 0.6324 eval: 1.7175 min: 1.0002 max: 2.7563 weight: 0.5509 eval: 1.8766 min: 1.0002 max: 2.7563 weight: 0.5204 eval: 1.9360 min: 1.0002 max: 2.7563 weight: 0.5965 eval: 1.7876 min: 1.0002 max: 2.7563 weight: 0.6379 eval: 1.7068 min: 1.0002 max: 2.7563 weight: 0.5822 eval: 1.8154 min: 1.0002 max: 2.7563 weight: 0.5189 eval: 1.9390 min: 1.0002 max: 2.7563 weight: 0.5897 eval: 1.8008 min: 1.0002 max: 2.7563 weight: 0.5845 eval: 1.8110 min: 1.0002 max: 2.7563 weight: 0.6628 eval: 1.6581 min: 1.0002 max: 2.7563 weight: 0.5377 eval: 1.9023 min: 1.0002 max: 2.7563 weight: 0.5044 eval: 1.9673 min: 1.0002 max: 2.7563 weight: 0.4773 eval: 2.0201 min: 1.0002 max: 2.7563 weight: 0.5886 eval: 1.8030 min: 1.0002 max: 2.7563 weight: 0.5046 eval: 1.9669 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.5006 eval: 1.9747 min: 1.0002 max: 2.7563 weight: 0.9740 eval: 1.0509 min: 1.0002 max: 2.7563 weight: 1.0000 eval: 1.0002 min: 1.0002 max: 2.7563 weight: 0.7617 eval: 1.4652 min: 1.0002 max: 2.7563 weight: 0.8762 eval: 1.2417 min: 1.0002 max: 2.7563 weight: 0.4914 eval: 1.9926 min: 1.0002 max: 2.7563 weight: 0.5841 eval: 1.8117 min: 1.0002 max: 2.7563 weight: 0.3959 eval: 2.1789 min: 1.0002 max: 2.7563 weight: 0.5063 eval: 1.9636 min: 1.0002 max: 2.7563 weight: 0.5728 eval: 1.8338 min: 1.0002 max: 2.7563 weight: 0.4776 eval: 2.0195 min: 1.0002 max: 2.7563 weight: 0.3498 eval: 2.2689 min: 1.0002 max: 2.7563 weight: 0.4425 eval: 2.0881 min: 1.0002 max: 2.7563 weight: 0.5877 eval: 1.8046 min: 1.0002 max: 2.7563 weight: 0.3868 eval: 2.1967 min: 1.0002 max: 2.7563 weight: 0.5172 eval: 1.9422 min: 1.0002 max: 2.7563 weight: 0.4517 eval: 2.0702 min: 1.0002 max: 2.7563 weight: 0.5752 eval: 1.8291 min: 1.0002 max: 2.7563 weight: 0.3719 eval: 2.2257 min: 1.0002 max: 2.7563 weight: 0.5717 eval: 1.8359 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.5129 eval: 1.9506 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.8581 eval: 1.2771 min: 1.0002 max: 2.7563 weight: 0.5340 eval: 1.9095 min: 1.0002 max: 2.7563 weight: 0.5604 eval: 1.8580 min: 1.0002 max: 2.7563 weight: 0.7057 eval: 1.5745 min: 1.0002 max: 2.7563 weight: 0.7184 eval: 1.5498 min: 1.0002 max: 2.7563 weight: 0.6955 eval: 1.5943 min: 1.0002 max: 2.7563 weight: 0.4769 eval: 2.0209 min: 1.0002 max: 2.7563 weight: 0.4451 eval: 2.0830 min: 1.0002 max: 2.7563 weight: 0.6200 eval: 1.7417 min: 1.0002 max: 2.7563 weight: 0.6816 eval: 1.6214 min: 1.0002 max: 2.7563 weight: 0.5037 eval: 1.9686 min: 1.0002 max: 2.7563 weight: 0.6090 eval: 1.7632 min: 1.0002 max: 2.7563 weight: 0.6244 eval: 1.7331 min: 1.0002 max: 2.7563 weight: 0.5337 eval: 1.9100 min: 1.0002 max: 2.7563 weight: 0.5613 eval: 1.8563 min: 1.0002 max: 2.7563 weight: 0.6060 eval: 1.7690 min: 1.0002 max: 2.7563 weight: 0.5879 eval: 1.8042 min: 1.0002 max: 2.7563 weight: 0.5175 eval: 1.9418 min: 1.0002 max: 2.7563 weight: 0.5337 eval: 1.9102 min: 1.0002 max: 2.7563 weight: 0.4850 eval: 2.0051 min: 1.0002 max: 2.7563 weight: 0.4143 eval: 2.1430 min: 1.0002 max: 2.7563 weight: 0.4344 eval: 2.1038 min: 1.0002 max: 2.7563 weight: 0.4343 eval: 2.1040 min: 1.0002 max: 2.7563 weight: 0.4450 eval: 2.0831 min: 1.0002 max: 2.7563 weight: 0.6617 eval: 1.6603 min: 1.0002 max: 2.7563 weight: 0.5812 eval: 1.8174 min: 1.0002 max: 2.7563 weight: 0.7672 eval: 1.4544 min: 1.0002 max: 2.7563 weight: 0.5919 eval: 1.7965 min: 1.0002 max: 2.7563 weight: 0.8952 eval: 1.2046 min: 1.0002 max: 2.7563 weight: 0.6375 eval: 1.7076 min: 1.0002 max: 2.7563 weight: 0.6417 eval: 1.6994 min: 1.0002 max: 2.7563 Adding 13820 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -343.4005, CN propb: -343.4005 weights: 0.2585 constraints: 305 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 305 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 305 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 13515 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 13515 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 13820 # command: