# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0286/ # command:# Making conformation for sequence T0286 numbered 1 through 205 Created new target T0286 from T0286.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0286/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0286//projects/compbio/experiments/protein-predict/casp7/T0286/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0286//projects/compbio/experiments/protein-predict/casp7/T0286/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0286/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0286/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)I114.CB) [> 3.4107 = 5.6846 < 7.3899] w=1.0000 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)F124.CB) [> 4.2624 = 7.1040 < 9.2352] w=0.9760 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)V125.CB) [> 3.2562 = 5.4269 < 7.0550] w=0.9620 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)F124.CB) [> 3.1124 = 5.1873 < 6.7435] w=0.9620 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)L123.CB) [> 3.0803 = 5.1339 < 6.6740] w=0.9376 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)F124.CB) [> 4.2403 = 7.0671 < 9.1872] w=0.9235 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)F88.CB) [> 3.7373 = 6.2288 < 8.0974] w=0.9026 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)A126.CB) [> 3.9995 = 6.6659 < 8.6656] w=0.8963 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)L123.CB) [> 4.1796 = 6.9660 < 9.0557] w=0.8955 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)V121.CB) [> 3.5165 = 5.8608 < 7.6190] w=0.8918 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)F88.CB) [> 4.3316 = 7.2193 < 9.3851] w=0.8892 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)V87.CB) [> 3.0339 = 5.0565 < 6.5734] w=0.8892 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)V121.CB) [> 3.9419 = 6.5699 < 8.5409] w=0.8794 to align # Constraint # added constraint: constraint((T0286)I111.CB, (T0286)L123.CB) [> 3.7537 = 6.2562 < 8.1331] w=0.8753 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)V87.CB) [> 4.3389 = 7.2314 < 9.4009] w=0.8739 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)F124.CB) [> 4.0366 = 6.7277 < 8.7460] w=0.8543 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)F88.CB) [> 2.9890 = 4.9817 < 6.4762] w=0.8531 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)L123.CB) [> 3.8607 = 6.4345 < 8.3648] w=0.8514 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)V86.CB) [> 2.8758 = 4.7930 < 6.2309] w=0.8490 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)L89.CB) [> 2.9559 = 4.9265 < 6.4045] w=0.8470 to align # Constraint # added constraint: constraint((T0286)I114.CB, (T0286)L123.CB) [> 3.5775 = 5.9624 < 7.7512] w=0.8411 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)W90.CB) [> 4.2078 = 7.0129 < 9.1168] w=0.8295 to align # Constraint # added constraint: constraint((T0286)D85.CB, (T0286)V121.CB) [> 3.8755 = 6.4592 < 8.3970] w=0.8245 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)V86.CB) [> 4.4165 = 7.3608 < 9.5691] w=0.8220 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)A126.CB) [> 2.6825 = 4.4709 < 5.8121] w=0.8138 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)V87.CB) [> 3.9174 = 6.5290 < 8.4877] w=0.8086 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)F88.CB) [> 4.2109 = 7.0181 < 9.1236] w=0.8086 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)D85.CB) [> 3.1602 = 5.2670 < 6.8471] w=0.7980 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)D85.CB) [> 3.9817 = 6.6361 < 8.6269] w=0.7959 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)V86.CB) [> 4.4720 = 7.4534 < 9.6894] w=0.7940 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)V45.CB) [> 3.3086 = 5.5143 < 7.1686] w=0.7856 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)I42.CB) [> 3.2731 = 5.4552 < 7.0918] w=0.7856 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)T122.CB) [> 4.3863 = 7.3104 < 9.5035] w=0.7847 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)T122.CB) [> 2.9397 = 4.8996 < 6.3695] w=0.7847 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)V156.CB) [> 3.3131 = 5.5218 < 7.1783] w=0.7832 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)D43.CB) [> 4.1705 = 6.9508 < 9.0361] w=0.7814 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)F158.CB) [> 3.4666 = 5.7777 < 7.5110] w=0.7805 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)L161.CB) [> 3.5150 = 5.8583 < 7.6158] w=0.7769 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)Y157.CB) [> 3.2763 = 5.4605 < 7.0987] w=0.7693 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)W90.CB) [> 3.0558 = 5.0930 < 6.6209] w=0.7664 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)V159.CB) [> 4.0379 = 6.7299 < 8.7488] w=0.7640 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)D43.CB) [> 3.1912 = 5.3186 < 6.9142] w=0.7616 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)V159.CB) [> 3.7604 = 6.2674 < 8.1476] w=0.7604 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)L110.CB) [> 3.4937 = 5.8228 < 7.5697] w=0.7591 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)F158.CB) [> 4.2041 = 7.0068 < 9.1088] w=0.7495 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)V87.CB) [> 4.5888 = 7.6480 < 9.9424] w=0.7425 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)F44.CB) [> 3.5765 = 5.9608 < 7.7490] w=0.7393 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)L123.CB) [> 4.5554 = 7.5923 < 9.8700] w=0.7392 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)L89.CB) [> 4.0877 = 6.8128 < 8.8567] w=0.7385 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)I91.CB) [> 3.1990 = 5.3316 < 6.9311] w=0.7365 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)V159.CB) [> 3.3382 = 5.5636 < 7.2327] w=0.7266 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)K160.CB) [> 3.0305 = 5.0507 < 6.5660] w=0.7225 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)A126.CB) [> 3.7866 = 6.3111 < 8.2044] w=0.7207 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)W90.CB) [> 4.1124 = 6.8541 < 8.9103] w=0.7119 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)R28.CB) [> 3.2787 = 5.4644 < 7.1038] w=0.7026 to align # Constraint # added constraint: constraint((T0286)P84.CB, (T0286)V121.CB) [> 3.5315 = 5.8859 < 7.6516] w=0.6912 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)L107.CB) [> 3.9974 = 6.6623 < 8.6610] w=0.6865 to align # Constraint # added constraint: constraint((T0286)L107.CB, (T0286)V125.CB) [> 4.1292 = 6.8820 < 8.9466] w=0.6836 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)V159.CB) [> 3.9018 = 6.5030 < 8.4538] w=0.6772 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)P84.CB) [> 3.1069 = 5.1782 < 6.7317] w=0.6751 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)V45.CB) [> 4.1142 = 6.8570 < 8.9141] w=0.6603 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)L161.CB) [> 3.4851 = 5.8084 < 7.5510] w=0.6523 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)V146.CB) [> 3.7889 = 6.3149 < 8.2093] w=0.6454 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)Y157.CB) [> 4.0734 = 6.7891 < 8.8258] w=0.6361 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)L31.CB) [> 4.0051 = 6.6752 < 8.6777] w=0.6310 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)Y128.CB) [> 3.0338 = 5.0564 < 6.5733] w=0.6302 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)Y128.CB) [> 3.4454 = 5.7424 < 7.4651] w=0.6261 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)V156.CB) [> 3.8449 = 6.4081 < 8.3305] w=0.6255 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)Y157.CB) [> 4.1378 = 6.8962 < 8.9651] w=0.6154 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)D85.CB) [> 3.2046 = 5.3410 < 6.9433] w=0.6149 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)V156.CB) [> 4.0611 = 6.7685 < 8.7990] w=0.6143 to align # Constraint # added constraint: constraint((T0286)Y32.CB, (T0286)F44.CB) [> 3.3768 = 5.6280 < 7.3163] w=0.6132 to align # Constraint # added constraint: constraint((T0286)Y32.CB, (T0286)I42.CB) [> 3.4154 = 5.6924 < 7.4001] w=0.6057 to align # Constraint # added constraint: constraint((T0286)D85.CB, (T0286)T122.CB) [> 4.1416 = 6.9027 < 8.9735] w=0.6040 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)S162.CB) [> 3.7377 = 6.2295 < 8.0984] w=0.6013 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)V156.CB) [> 3.9476 = 6.5794 < 8.5532] w=0.6005 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)I91.CB) [> 3.6059 = 6.0099 < 7.8128] w=0.5916 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)F158.CB) [> 4.0099 = 6.6832 < 8.6881] w=0.5915 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)W191.CB) [> 3.7210 = 6.2017 < 8.0621] w=0.5861 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)L161.CB) [> 3.4951 = 5.8251 < 7.5726] w=0.5687 to align # Constraint # added constraint: constraint((T0286)L79.CB, (T0286)I114.CB) [> 3.9009 = 6.5015 < 8.4520] w=0.5687 to align # Constraint # added constraint: constraint((T0286)I75.CB, (T0286)L110.CB) [> 3.5217 = 5.8695 < 7.6304] w=0.5668 to align # Constraint # added constraint: constraint((T0286)L107.CB, (T0286)K149.CB) [> 3.4877 = 5.8128 < 7.5567] w=0.5633 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)F158.CB) [> 4.0992 = 6.8319 < 8.8815] w=0.5619 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)Y157.CB) [> 3.9448 = 6.5747 < 8.5471] w=0.5618 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)W78.CB) [> 3.7074 = 6.1790 < 8.0327] w=0.5541 to align # Constraint # added constraint: constraint((T0286)A104.CB, (T0286)I145.CB) [> 3.3218 = 5.5363 < 7.1972] w=0.5522 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)L161.CB) [> 3.8838 = 6.4730 < 8.4149] w=0.5462 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)S47.CB) [> 4.2674 = 7.1124 < 9.2462] w=0.5447 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)K155.CB) [> 3.6906 = 6.1509 < 7.9962] w=0.5408 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)P143.CB) [> 3.4824 = 5.8039 < 7.5451] w=0.5353 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)V125.CB) [> 4.3696 = 7.2826 < 9.4675] w=0.5327 to align # Constraint # added constraint: constraint((T0286)I75.CB, (T0286)Q113.CB) [> 3.1468 = 5.2446 < 6.8180] w=0.5307 to align # Constraint # added constraint: constraint((T0286)L161.CB, (T0286)I187.CB) [> 3.6185 = 6.0308 < 7.8400] w=0.5306 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)A150.CB) [> 3.1166 = 5.1943 < 6.7526] w=0.5241 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)N139.CB) [> 3.3923 = 5.6539 < 7.3501] w=0.5239 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)V146.CB) [> 3.5481 = 5.9135 < 7.6875] w=0.5228 to align # Constraint # added constraint: constraint((T0286)V146.CB, (T0286)F158.CB) [> 3.5619 = 5.9365 < 7.7175] w=0.5191 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)I42.CB) [> 4.2507 = 7.0844 < 9.2098] w=0.5171 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)Y128.CB) [> 3.9989 = 6.6648 < 8.6642] w=0.5121 to align # Constraint # added constraint: constraint((T0286)L79.CB, (T0286)V117.CB) [> 3.0446 = 5.0744 < 6.5967] w=0.5118 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)W191.CB) [> 3.7799 = 6.2999 < 8.1899] w=0.5093 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)W191.CB) [> 4.2034 = 7.0057 < 9.1074] w=0.5052 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)S162.CB) [> 3.3974 = 5.6623 < 7.3610] w=0.5051 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)G46.CA) [> 3.0226 = 5.0376 < 6.5489] w=0.5050 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)A188.CB) [> 3.0749 = 5.1248 < 6.6623] w=0.5016 to align # Constraint # added constraint: constraint((T0286)R28.CB, (T0286)F44.CB) [> 3.8671 = 6.4452 < 8.3788] w=0.5016 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)K160.CB) [> 4.2459 = 7.0764 < 9.1993] w=0.5006 to align # Constraint # added constraint: constraint((T0286)L107.CB, (T0286)V146.CB) [> 3.9357 = 6.5595 < 8.5273] w=0.4993 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)V125.CB) [> 4.2507 = 7.0846 < 9.2099] w=0.4984 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)V86.CB) [> 3.8870 = 6.4782 < 8.4217] w=0.4978 to align # Constraint # added constraint: constraint((T0286)L34.CB, (T0286)A188.CB) [> 3.6474 = 6.0790 < 7.9027] w=0.4975 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)I111.CB) [> 4.1451 = 6.9085 < 8.9811] w=0.4897 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)I187.CB) [> 4.0243 = 6.7071 < 8.7192] w=0.4888 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)L107.CB) [> 3.8578 = 6.4297 < 8.3586] w=0.4877 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)W90.CB) [> 4.3227 = 7.2045 < 9.3658] w=0.4841 to align # Constraint # added constraint: constraint((T0286)S108.CB, (T0286)K149.CB) [> 3.5445 = 5.9075 < 7.6798] w=0.4840 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)Y128.CB) [> 3.9253 = 6.5421 < 8.5048] w=0.4797 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)N103.CB) [> 3.6049 = 6.0082 < 7.8107] w=0.4788 to align # Constraint # added constraint: constraint((T0286)A72.CB, (T0286)N109.CB) [> 3.9736 = 6.6227 < 8.6095] w=0.4758 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)H82.CB) [> 3.6441 = 6.0735 < 7.8955] w=0.4749 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)R28.CB) [> 3.2128 = 5.3546 < 6.9610] w=0.4745 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)T195.CB) [> 3.4304 = 5.7173 < 7.4325] w=0.4741 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)W90.CB) [> 3.2573 = 5.4289 < 7.0576] w=0.4737 to align # Constraint # added constraint: constraint((T0286)I111.CB, (T0286)K149.CB) [> 3.8759 = 6.4599 < 8.3978] w=0.4723 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)L79.CB) [> 3.9022 = 6.5036 < 8.4547] w=0.4694 to align # Constraint # added constraint: constraint((T0286)A104.CB, (T0286)K149.CB) [> 3.6705 = 6.1175 < 7.9528] w=0.4674 to align # Constraint # added constraint: constraint((T0286)V45.CB, (T0286)W78.CB) [> 3.6639 = 6.1065 < 7.9385] w=0.4671 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)G46.CA) [> 3.9905 = 6.6508 < 8.6460] w=0.4670 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)S47.CB) [> 3.6292 = 6.0487 < 7.8632] w=0.4655 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)S47.CB) [> 3.6313 = 6.0522 < 7.8679] w=0.4655 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L35.CB) [> 3.7991 = 6.3318 < 8.2313] w=0.4642 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)V45.CB) [> 4.2381 = 7.0635 < 9.1825] w=0.4628 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)F44.CB) [> 3.2341 = 5.3902 < 7.0072] w=0.4628 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)Y192.CB) [> 3.7741 = 6.2901 < 8.1772] w=0.4625 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)G46.CA) [> 4.2438 = 7.0730 < 9.1949] w=0.4611 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)K155.CB) [> 3.3080 = 5.5134 < 7.1674] w=0.4574 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)G106.CA) [> 3.1849 = 5.3082 < 6.9006] w=0.4527 to align # Constraint # added constraint: constraint((T0286)E30.CB, (T0286)A188.CB) [> 2.5943 = 4.3238 < 5.6209] w=0.4490 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)A188.CB) [> 3.1514 = 5.2524 < 6.8281] w=0.4490 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)I71.CB) [> 3.9212 = 6.5354 < 8.4960] w=0.4489 to align # Constraint # added constraint: constraint((T0286)Q147.CB, (T0286)F158.CB) [> 3.1821 = 5.3035 < 6.8945] w=0.4456 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)Y184.CB) [> 3.2730 = 5.4550 < 7.0915] w=0.4455 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)Y194.CB) [> 3.6041 = 6.0069 < 7.8090] w=0.4443 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)W191.CB) [> 3.7431 = 6.2384 < 8.1100] w=0.4400 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)H82.CB) [> 3.4761 = 5.7935 < 7.5315] w=0.4398 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)G92.CA) [> 4.3706 = 7.2843 < 9.4696] w=0.4361 to align # Constraint # added constraint: constraint((T0286)L34.CB, (T0286)Y192.CB) [> 3.1516 = 5.2527 < 6.8285] w=0.4358 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)I142.CB) [> 3.6413 = 6.0689 < 7.8896] w=0.4299 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)L110.CB) [> 4.1021 = 6.8369 < 8.8879] w=0.4276 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)I75.CB) [> 3.9862 = 6.6436 < 8.6367] w=0.4274 to align # Constraint # added constraint: constraint((T0286)N76.CB, (T0286)V117.CB) [> 3.8538 = 6.4229 < 8.3498] w=0.4259 to align # Constraint # added constraint: constraint((T0286)I75.CB, (T0286)I114.CB) [> 4.1959 = 6.9932 < 9.0912] w=0.4225 to align # Constraint # added constraint: constraint((T0286)I111.CB, (T0286)G153.CA) [> 3.5437 = 5.9062 < 7.6781] w=0.4219 to align # Constraint # added constraint: constraint((T0286)N80.CB, (T0286)V117.CB) [> 3.7868 = 6.3113 < 8.2046] w=0.4189 to align # Constraint # added constraint: constraint((T0286)I111.CB, (T0286)V156.CB) [> 3.7564 = 6.2607 < 8.1389] w=0.4168 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)S41.CB) [> 4.1557 = 6.9262 < 9.0041] w=0.4143 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)F88.CB) [> 3.8808 = 6.4681 < 8.4085] w=0.4141 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)I91.CB) [> 3.6077 = 6.0129 < 7.8168] w=0.4115 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)F44.CB) [> 4.5165 = 7.5275 < 9.7858] w=0.4100 to align # Constraint # added constraint: constraint((T0286)E30.CB, (T0286)K185.CB) [> 3.4813 = 5.8021 < 7.5428] w=0.4070 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)S47.CB) [> 3.1084 = 5.1806 < 6.7348] w=0.4067 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)V45.CB) [> 3.7028 = 6.1713 < 8.0227] w=0.4067 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)W90.CB) [> 3.9282 = 6.5470 < 8.5111] w=0.4065 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)Y194.CB) [> 3.3493 = 5.5821 < 7.2568] w=0.4060 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)L110.CB) [> 4.2560 = 7.0934 < 9.2214] w=0.3994 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)V125.CB) [> 4.2301 = 7.0501 < 9.1651] w=0.3991 to align # Constraint # added constraint: constraint((T0286)A72.CB, (T0286)L110.CB) [> 3.8219 = 6.3698 < 8.2807] w=0.3985 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)I114.CB) [> 4.3242 = 7.2069 < 9.3690] w=0.3972 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)D95.CB) [> 3.3003 = 5.5005 < 7.1506] w=0.3889 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)L107.CB) [> 3.6149 = 6.0249 < 7.8323] w=0.3872 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)W191.CB) [> 3.5037 = 5.8394 < 7.5913] w=0.3867 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)I187.CB) [> 3.0001 = 5.0002 < 6.5003] w=0.3853 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)I190.CB) [> 3.4606 = 5.7677 < 7.4980] w=0.3816 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)L161.CB) [> 3.9878 = 6.6464 < 8.6403] w=0.3804 to align # Constraint # added constraint: constraint((T0286)W66.CB, (T0286)I91.CB) [> 4.2288 = 7.0480 < 9.1623] w=0.3789 to align # Constraint # added constraint: constraint((T0286)W66.CB, (T0286)N94.CB) [> 3.7530 = 6.2551 < 8.1316] w=0.3789 to align # Constraint # added constraint: constraint((T0286)T67.CB, (T0286)G92.CA) [> 4.1778 = 6.9631 < 9.0520] w=0.3789 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)I91.CB) [> 3.0606 = 5.1010 < 6.6314] w=0.3789 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)G92.CA) [> 3.6630 = 6.1050 < 7.9366] w=0.3789 to align # Constraint # added constraint: constraint((T0286)I71.CB, (T0286)I91.CB) [> 3.7044 = 6.1740 < 8.0262] w=0.3789 to align # Constraint # added constraint: constraint((T0286)D171.CB, (T0286)S180.CB) [> 3.4530 = 5.7549 < 7.4814] w=0.3761 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)D127.CB) [> 3.6675 = 6.1126 < 7.9463] w=0.3753 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)W90.CB) [> 3.7393 = 6.2321 < 8.1018] w=0.3740 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)T195.CB) [> 3.8558 = 6.4263 < 8.3542] w=0.3696 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)I71.CB) [> 3.7869 = 6.3115 < 8.2050] w=0.3677 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)Y32.CB) [> 3.5519 = 5.9198 < 7.6958] w=0.3663 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)D43.CB) [> 3.9454 = 6.5757 < 8.5485] w=0.3646 to align # Constraint # added constraint: constraint((T0286)T67.CB, (T0286)D95.CB) [> 3.0109 = 5.0182 < 6.5237] w=0.3635 to align # Constraint # added constraint: constraint((T0286)I111.CB, (T0286)V125.CB) [> 4.1723 = 6.9538 < 9.0399] w=0.3625 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)W66.CB) [> 3.7626 = 6.2710 < 8.1524] w=0.3602 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)N139.CB) [> 3.5968 = 5.9947 < 7.7931] w=0.3584 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)Q165.CB) [> 3.7723 = 6.2871 < 8.1733] w=0.3575 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)T195.CB) [> 4.2474 = 7.0791 < 9.2028] w=0.3538 to align # Constraint # added constraint: constraint((T0286)S47.CB, (T0286)G62.CA) [> 3.0607 = 5.1012 < 6.6315] w=0.3521 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L40.CB) [> 3.5098 = 5.8497 < 7.6046] w=0.3513 to align # Constraint # added constraint: constraint((T0286)G65.CA, (T0286)N94.CB) [> 3.0025 = 5.0041 < 6.5054] w=0.3508 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)G65.CA) [> 3.5097 = 5.8496 < 7.6044] w=0.3496 to align # Constraint # added constraint: constraint((T0286)L161.CB, (T0286)I190.CB) [> 3.6262 = 6.0436 < 7.8567] w=0.3474 to align # Constraint # added constraint: constraint((T0286)S47.CB, (T0286)N74.CB) [> 4.0047 = 6.6745 < 8.6769] w=0.3442 to align # Constraint # added constraint: constraint((T0286)Q165.CB, (T0286)G183.CA) [> 4.4149 = 7.3582 < 9.5657] w=0.3433 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)W78.CB) [> 4.3054 = 7.1757 < 9.3284] w=0.3420 to align # Constraint # added constraint: constraint((T0286)L79.CB, (T0286)Q113.CB) [> 3.2304 = 5.3840 < 6.9991] w=0.3390 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)T67.CB) [> 4.3218 = 7.2030 < 9.3639] w=0.3380 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)W90.CB) [> 3.2924 = 5.4873 < 7.1335] w=0.3368 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)H178.CB) [> 4.2069 = 7.0115 < 9.1150] w=0.3368 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)H178.CB) [> 3.6929 = 6.1548 < 8.0012] w=0.3368 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)D43.CB) [> 2.8549 = 4.7582 < 6.1857] w=0.3364 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)S64.CB) [> 2.3508 = 3.9180 < 5.0934] w=0.3356 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)L179.CB) [> 4.2834 = 7.1391 < 9.2808] w=0.3336 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)G46.CA) [> 3.4727 = 5.7879 < 7.5243] w=0.3333 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)S64.CB) [> 3.2657 = 5.4428 < 7.0756] w=0.3327 to align # Constraint # added constraint: constraint((T0286)N103.CB, (T0286)I142.CB) [> 3.8283 = 6.3805 < 8.2947] w=0.3321 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)G92.CA) [> 4.3911 = 7.3186 < 9.5141] w=0.3249 to align # Constraint # added constraint: constraint((T0286)A72.CB, (T0286)G106.CA) [> 3.6490 = 6.0817 < 7.9061] w=0.3249 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)N103.CB) [> 4.1278 = 6.8796 < 8.9435] w=0.3232 to align # Constraint # added constraint: constraint((T0286)P69.CB, (T0286)G106.CA) [> 4.2916 = 7.1526 < 9.2984] w=0.3228 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)S41.CB) [> 4.2549 = 7.0915 < 9.2190] w=0.3227 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)V45.CB) [> 4.1567 = 6.9278 < 9.0062] w=0.3227 to align # Constraint # added constraint: constraint((T0286)D171.CB, (T0286)I182.CB) [> 3.5966 = 5.9943 < 7.7926] w=0.3225 to align # Constraint # added constraint: constraint((T0286)G46.CA, (T0286)G62.CA) [> 3.6244 = 6.0407 < 7.8530] w=0.3223 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)I187.CB) [> 3.7311 = 6.2185 < 8.0840] w=0.3212 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)Y129.CB) [> 3.8160 = 6.3600 < 8.2680] w=0.3136 to align # Constraint # added constraint: constraint((T0286)A104.CB, (T0286)V141.CB) [> 3.4100 = 5.6834 < 7.3884] w=0.3128 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)G62.CA) [> 3.6433 = 6.0722 < 7.8938] w=0.3116 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)H178.CB) [> 3.5144 = 5.8574 < 7.6146] w=0.3087 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)G46.CA) [> 4.4124 = 7.3540 < 9.5602] w=0.3087 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)I42.CB) [> 3.1093 = 5.1822 < 6.7368] w=0.3085 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)G93.CA) [> 3.9433 = 6.5722 < 8.5438] w=0.3083 to align # Constraint # added constraint: constraint((T0286)F115.CB, (T0286)G153.CA) [> 4.2505 = 7.0842 < 9.2095] w=0.3080 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)I142.CB) [> 3.6972 = 6.1620 < 8.0106] w=0.3076 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)N94.CB) [> 3.3025 = 5.5042 < 7.1555] w=0.3055 to align # Constraint # added constraint: constraint((T0286)V121.CB, (T0286)K155.CB) [> 4.3310 = 7.2183 < 9.3838] w=0.3037 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)L89.CB) [> 4.4257 = 7.3762 < 9.5890] w=0.2996 to align # Constraint # added constraint: constraint((T0286)V87.CB, (T0286)K118.CB) [> 3.9284 = 6.5473 < 8.5115] w=0.2991 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)F44.CB) [> 4.4683 = 7.4472 < 9.6813] w=0.2990 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)S41.CB) [> 3.0593 = 5.0988 < 6.6284] w=0.2984 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)L179.CB) [> 3.9098 = 6.5164 < 8.4713] w=0.2947 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)W66.CB) [> 2.8515 = 4.7525 < 6.1782] w=0.2947 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)Y129.CB) [> 3.7551 = 6.2585 < 8.1360] w=0.2947 to align # Constraint # added constraint: constraint((T0286)S47.CB, (T0286)W78.CB) [> 3.4646 = 5.7743 < 7.5066] w=0.2947 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)R28.CB) [> 3.4832 = 5.8053 < 7.5469] w=0.2938 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)D127.CB) [> 3.5960 = 5.9933 < 7.7913] w=0.2933 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)T195.CB) [> 3.9458 = 6.5763 < 8.5492] w=0.2908 to align # Constraint # added constraint: constraint((T0286)L35.CB, (T0286)Y192.CB) [> 3.5314 = 5.8857 < 7.6514] w=0.2906 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)L40.CB) [> 3.5701 = 5.9502 < 7.7352] w=0.2888 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)Y129.CB) [> 4.0372 = 6.7287 < 8.7472] w=0.2852 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)G62.CA) [> 3.9535 = 6.5892 < 8.5660] w=0.2848 to align # Constraint # added constraint: constraint((T0286)S47.CB, (T0286)H63.CB) [> 4.3808 = 7.3013 < 9.4917] w=0.2847 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)G62.CA) [> 2.7403 = 4.5671 < 5.9372] w=0.2835 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)S64.CB) [> 3.9471 = 6.5784 < 8.5520] w=0.2821 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)G46.CA) [> 4.1666 = 6.9443 < 9.0275] w=0.2807 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)F44.CB) [> 4.2948 = 7.1581 < 9.3055] w=0.2806 to align # Constraint # added constraint: constraint((T0286)L34.CB, (T0286)N189.CB) [> 3.8109 = 6.3516 < 8.2570] w=0.2771 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)I142.CB) [> 4.1760 = 6.9600 < 9.0480] w=0.2771 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)K186.CB) [> 4.1335 = 6.8891 < 8.9558] w=0.2738 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)D127.CB) [> 3.5429 = 5.9049 < 7.6763] w=0.2718 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)H63.CB) [> 4.2460 = 7.0766 < 9.1996] w=0.2695 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)G65.CA) [> 3.2383 = 5.3972 < 7.0164] w=0.2667 to align # Constraint # added constraint: constraint((T0286)W131.CB, (T0286)L177.CB) [> 3.4365 = 5.7275 < 7.4458] w=0.2666 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)H63.CB) [> 3.5710 = 5.9516 < 7.7371] w=0.2653 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)Q165.CB) [> 3.1725 = 5.2875 < 6.8737] w=0.2642 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)T195.CB) [> 3.6293 = 6.0488 < 7.8635] w=0.2622 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)A126.CB) [> 4.0716 = 6.7860 < 8.8218] w=0.2604 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)G93.CA) [> 4.4174 = 7.3623 < 9.5710] w=0.2591 to align # Constraint # added constraint: constraint((T0286)P143.CB, (T0286)F158.CB) [> 3.5711 = 5.9519 < 7.7375] w=0.2546 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)K160.CB) [> 3.4103 = 5.6838 < 7.3889] w=0.2543 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)G62.CA) [> 2.8922 = 4.8204 < 6.2665] w=0.2526 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)G62.CA) [> 2.6158 = 4.3596 < 5.6675] w=0.2526 to align # Constraint # added constraint: constraint((T0286)I172.CB, (T0286)G183.CA) [> 3.8492 = 6.4153 < 8.3399] w=0.2489 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)L35.CB) [> 4.2774 = 7.1290 < 9.2676] w=0.2469 to align # Constraint # added constraint: constraint((T0286)N103.CB, (T0286)I145.CB) [> 3.6233 = 6.0388 < 7.8505] w=0.2461 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)I198.CB) [> 3.3610 = 5.6016 < 7.2821] w=0.2444 to align # Constraint # added constraint: constraint((T0286)K7.CB, (T0286)L40.CB) [> 4.4159 = 7.3598 < 9.5677] w=0.2420 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)S26.CB) [> 3.2536 = 5.4226 < 7.0494] w=0.2386 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)S26.CB) [> 3.5545 = 5.9242 < 7.7015] w=0.2386 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)G62.CA) [> 3.8903 = 6.4839 < 8.4291] w=0.2386 to align # Constraint # added constraint: constraint((T0286)S108.CB, (T0286)I145.CB) [> 3.6420 = 6.0700 < 7.8910] w=0.2372 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)I142.CB) [> 3.9126 = 6.5211 < 8.4774] w=0.2333 to align # Constraint # added constraint: constraint((T0286)V45.CB, (T0286)I75.CB) [> 3.9962 = 6.6603 < 8.6584] w=0.2314 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)I71.CB) [> 4.1705 = 6.9508 < 9.0360] w=0.2309 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)H63.CB) [> 4.1125 = 6.8542 < 8.9104] w=0.2287 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)I198.CB) [> 4.1558 = 6.9263 < 9.0042] w=0.2278 to align # Constraint # added constraint: constraint((T0286)L31.CB, (T0286)I42.CB) [> 4.4340 = 7.3900 < 9.6070] w=0.2271 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)N103.CB) [> 3.3835 = 5.6391 < 7.3309] w=0.2245 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)S64.CB) [> 4.0200 = 6.7000 < 8.7099] w=0.2245 to align # Constraint # added constraint: constraint((T0286)T5.CB, (T0286)S41.CB) [> 3.2614 = 5.4357 < 7.0664] w=0.2237 to align # Constraint # added constraint: constraint((T0286)Y27.CB, (T0286)L179.CB) [> 4.2618 = 7.1030 < 9.2339] w=0.2229 to align # Constraint # added constraint: constraint((T0286)H63.CB, (T0286)N74.CB) [> 4.2976 = 7.1627 < 9.3115] w=0.2225 to align # Constraint # added constraint: constraint((T0286)P84.CB, (T0286)I114.CB) [> 4.5014 = 7.5024 < 9.7531] w=0.2221 to align # Constraint # added constraint: constraint((T0286)Q165.CB, (T0286)K186.CB) [> 4.1896 = 6.9826 < 9.0774] w=0.2213 to align # Constraint # added constraint: constraint((T0286)Q165.CB, (T0286)I187.CB) [> 3.5675 = 5.9459 < 7.7297] w=0.2178 to align # Constraint # added constraint: constraint((T0286)N94.CB, (T0286)I135.CB) [> 3.4643 = 5.7738 < 7.5059] w=0.2140 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)I187.CB) [> 4.5238 = 7.5396 < 9.8015] w=0.2105 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)F88.CB) [> 4.5665 = 7.6108 < 9.8940] w=0.2105 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)H63.CB) [> 4.6130 = 7.6883 < 9.9948] w=0.2105 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)L179.CB) [> 4.1644 = 6.9407 < 9.0229] w=0.2105 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L31.CB) [> 4.4067 = 7.3446 < 9.5479] w=0.2100 to align # Constraint # added constraint: constraint((T0286)L96.CB, (T0286)I135.CB) [> 3.4907 = 5.8179 < 7.5633] w=0.2095 to align # Constraint # added constraint: constraint((T0286)D85.CB, (T0286)N120.CB) [> 4.1455 = 6.9092 < 8.9820] w=0.2083 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)T81.CB) [> 4.1812 = 6.9687 < 9.0593] w=0.2030 to align # Constraint # added constraint: constraint((T0286)A38.CB, (T0286)I196.CB) [> 3.8648 = 6.4413 < 8.3737] w=0.2020 to align # Constraint # added constraint: constraint((T0286)P69.CB, (T0286)D95.CB) [> 4.4363 = 7.3939 < 9.6121] w=0.1965 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)Y128.CB) [> 4.2138 = 7.0230 < 9.1299] w=0.1965 to align # Constraint # added constraint: constraint((T0286)L35.CB, (T0286)F88.CB) [> 4.6117 = 7.6861 < 9.9919] w=0.1931 to align # Constraint # added constraint: constraint((T0286)G46.CA, (T0286)I91.CB) [> 3.8578 = 6.4297 < 8.3586] w=0.1929 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)K160.CB) [> 3.4573 = 5.7622 < 7.4908] w=0.1925 to align # Constraint # added constraint: constraint((T0286)E30.CB, (T0286)I187.CB) [> 4.5215 = 7.5358 < 9.7965] w=0.1909 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)M24.CB) [> 3.8570 = 6.4283 < 8.3568] w=0.1904 to align # Constraint # added constraint: constraint((T0286)F115.CB, (T0286)K154.CB) [> 4.3569 = 7.2615 < 9.4399] w=0.1900 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)F158.CB) [> 3.7100 = 6.1833 < 8.0383] w=0.1870 to align # Constraint # added constraint: constraint((T0286)L35.CB, (T0286)I196.CB) [> 4.2888 = 7.1480 < 9.2924] w=0.1858 to align # Constraint # added constraint: constraint((T0286)V146.CB, (T0286)Y157.CB) [> 3.8844 = 6.4740 < 8.4163] w=0.1829 to align # Constraint # added constraint: constraint((T0286)N83.CB, (T0286)N120.CB) [> 4.2208 = 7.0347 < 9.1451] w=0.1825 to align # Constraint # added constraint: constraint((T0286)G21.CA, (T0286)E181.CB) [> 3.7491 = 6.2485 < 8.1230] w=0.1824 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)H178.CB) [> 2.5480 = 4.2467 < 5.5207] w=0.1824 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)Y184.CB) [> 4.0659 = 6.7765 < 8.8094] w=0.1824 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)H178.CB) [> 4.1909 = 6.9848 < 9.0803] w=0.1824 to align # Constraint # added constraint: constraint((T0286)Y157.CB, (T0286)I198.CB) [> 3.5539 = 5.9232 < 7.7001] w=0.1824 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)W131.CB) [> 3.7728 = 6.2880 < 8.1744] w=0.1816 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)V121.CB) [> 4.5526 = 7.5876 < 9.8639] w=0.1811 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)Y27.CB) [> 3.8212 = 6.3687 < 8.2793] w=0.1810 to align # Constraint # added constraint: constraint((T0286)F115.CB, (T0286)V156.CB) [> 4.2671 = 7.1119 < 9.2455] w=0.1790 to align # Constraint # added constraint: constraint((T0286)Q165.CB, (T0286)L179.CB) [> 3.5059 = 5.8431 < 7.5960] w=0.1766 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)Y138.CB) [> 4.3570 = 7.2618 < 9.4403] w=0.1747 to align # Constraint # added constraint: constraint((T0286)V125.CB, (T0286)K160.CB) [> 3.8387 = 6.3979 < 8.3173] w=0.1737 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)D127.CB) [> 3.4661 = 5.7769 < 7.5099] w=0.1727 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)K160.CB) [> 3.0594 = 5.0990 < 6.6287] w=0.1716 to align # Constraint # added constraint: constraint((T0286)L35.CB, (T0286)A188.CB) [> 4.2489 = 7.0814 < 9.2059] w=0.1707 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)L177.CB) [> 4.4877 = 7.4794 < 9.7233] w=0.1684 to align # Constraint # added constraint: constraint((T0286)G21.CA, (T0286)H178.CB) [> 3.2990 = 5.4984 < 7.1479] w=0.1684 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)L177.CB) [> 4.5913 = 7.6522 < 9.9478] w=0.1684 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)Y184.CB) [> 4.1398 = 6.8997 < 8.9696] w=0.1684 to align # Constraint # added constraint: constraint((T0286)H82.CB, (T0286)K118.CB) [> 4.0939 = 6.8232 < 8.8701] w=0.1679 to align # Constraint # added constraint: constraint((T0286)V146.CB, (T0286)V156.CB) [> 3.1273 = 5.2121 < 6.7758] w=0.1642 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)L179.CB) [> 3.1921 = 5.3201 < 6.9162] w=0.1639 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)Q48.CB) [> 4.3382 = 7.2303 < 9.3993] w=0.1631 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)I198.CB) [> 3.9114 = 6.5190 < 8.4747] w=0.1628 to align # Constraint # added constraint: constraint((T0286)G100.CA, (T0286)Y138.CB) [> 3.8518 = 6.4197 < 8.3456] w=0.1612 to align # Constraint # added constraint: constraint((T0286)I6.CB, (T0286)L199.CB) [> 3.6093 = 6.0155 < 7.8201] w=0.1588 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)Y129.CB) [> 4.4295 = 7.3824 < 9.5971] w=0.1578 to align # Constraint # added constraint: constraint((T0286)W131.CB, (T0286)G176.CA) [> 3.4256 = 5.7093 < 7.4221] w=0.1544 to align # Constraint # added constraint: constraint((T0286)L96.CB, (T0286)Y138.CB) [> 3.7015 = 6.1691 < 8.0198] w=0.1544 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)L177.CB) [> 4.5579 = 7.5964 < 9.8754] w=0.1535 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)W66.CB) [> 4.5492 = 7.5820 < 9.8565] w=0.1532 to align # Constraint # added constraint: constraint((T0286)D95.CB, (T0286)I135.CB) [> 4.0786 = 6.7977 < 8.8371] w=0.1525 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)F44.CB) [> 2.1555 = 3.5924 < 4.6702] w=0.1524 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)N94.CB) [> 4.0259 = 6.7098 < 8.7228] w=0.1523 to align # Constraint # added constraint: constraint((T0286)I68.CB, (T0286)N94.CB) [> 4.5661 = 7.6101 < 9.8932] w=0.1508 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)S64.CB) [> 4.0212 = 6.7021 < 8.7127] w=0.1503 to align # Constraint # added constraint: constraint((T0286)G46.CA, (T0286)S64.CB) [> 4.1359 = 6.8932 < 8.9612] w=0.1492 to align # Constraint # added constraint: constraint((T0286)F44.CB, (T0286)A72.CB) [> 4.2485 = 7.0808 < 9.2050] w=0.1490 to align # Constraint # added constraint: constraint((T0286)L96.CB, (T0286)Y128.CB) [> 3.8445 = 6.4076 < 8.3299] w=0.1478 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)L199.CB) [> 3.5683 = 5.9472 < 7.7313] w=0.1456 to align # Constraint # added constraint: constraint((T0286)R49.CB, (T0286)I71.CB) [> 3.8385 = 6.3974 < 8.3167] w=0.1453 to align # Constraint # added constraint: constraint((T0286)T5.CB, (T0286)I42.CB) [> 4.5611 = 7.6018 < 9.8823] w=0.1431 to align # Constraint # added constraint: constraint((T0286)F158.CB, (T0286)Y194.CB) [> 3.6732 = 6.1221 < 7.9587] w=0.1413 to align # Constraint # added constraint: constraint((T0286)A126.CB, (T0286)Y157.CB) [> 4.3727 = 7.2878 < 9.4741] w=0.1413 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)L179.CB) [> 4.5207 = 7.5345 < 9.7949] w=0.1403 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)L179.CB) [> 4.4111 = 7.3518 < 9.5573] w=0.1403 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)S180.CB) [> 3.6969 = 6.1616 < 8.0100] w=0.1403 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)L161.CB) [> 4.1946 = 6.9910 < 9.0882] w=0.1399 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)I91.CB) [> 4.3692 = 7.2820 < 9.4666] w=0.1397 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)L89.CB) [> 3.5515 = 5.9193 < 7.6950] w=0.1355 to align # Constraint # added constraint: constraint((T0286)S162.CB, (T0286)G176.CA) [> 3.9416 = 6.5693 < 8.5401] w=0.1352 to align # Constraint # added constraint: constraint((T0286)Y157.CB, (T0286)W191.CB) [> 3.4711 = 5.7852 < 7.5208] w=0.1339 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)F44.CB) [> 4.7547 = 7.9244 < 10.3017] w=0.1282 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)A150.CB) [> 4.3803 = 7.3006 < 9.4907] w=0.1279 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)R28.CB) [> 4.0690 = 6.7817 < 8.8163] w=0.1263 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)T29.CB) [> 3.5886 = 5.9811 < 7.7754] w=0.1263 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)S173.CB) [> 3.8712 = 6.4520 < 8.3875] w=0.1263 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)R28.CB) [> 4.1439 = 6.9065 < 8.9784] w=0.1257 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)I91.CB) [> 4.5120 = 7.5200 < 9.7760] w=0.1248 to align # Constraint # added constraint: constraint((T0286)Q48.CB, (T0286)S64.CB) [> 3.4773 = 5.7956 < 7.5342] w=0.1246 to align # Constraint # added constraint: constraint((T0286)Q48.CB, (T0286)W66.CB) [> 4.2978 = 7.1629 < 9.3118] w=0.1246 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)D127.CB) [> 3.8257 = 6.3761 < 8.2889] w=0.1244 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)P84.CB) [> 4.0375 = 6.7291 < 8.7478] w=0.1237 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)D127.CB) [> 4.7303 = 7.8838 < 10.2490] w=0.1235 to align # Constraint # added constraint: constraint((T0286)S173.CB, (T0286)G183.CA) [> 4.1396 = 6.8994 < 8.9692] w=0.1226 to align # Constraint # added constraint: constraint((T0286)I172.CB, (T0286)I182.CB) [> 3.4944 = 5.8241 < 7.5713] w=0.1226 to align # Constraint # added constraint: constraint((T0286)F124.CB, (T0286)K160.CB) [> 4.3021 = 7.1702 < 9.3213] w=0.1207 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)G183.CA) [> 4.4471 = 7.4117 < 9.6353] w=0.1192 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L199.CB) [> 4.3825 = 7.3041 < 9.4953] w=0.1140 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)G62.CA) [> 4.4730 = 7.4550 < 9.6915] w=0.1123 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)G93.CA) [> 3.8248 = 6.3747 < 8.2871] w=0.1119 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)D175.CB) [> 4.2930 = 7.1549 < 9.3014] w=0.1097 to align # Constraint # added constraint: constraint((T0286)F166.CB, (T0286)H178.CB) [> 2.3812 = 3.9687 < 5.1593] w=0.1091 to align # Constraint # added constraint: constraint((T0286)G46.CA, (T0286)H63.CB) [> 4.0014 = 6.6690 < 8.6698] w=0.1088 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)A150.CB) [> 4.1813 = 6.9688 < 9.0595] w=0.1085 to align # Constraint # added constraint: constraint((T0286)E163.CB, (T0286)L177.CB) [> 3.6831 = 6.1385 < 7.9800] w=0.1078 to align # Constraint # added constraint: constraint((T0286)E163.CB, (T0286)D175.CB) [> 3.3696 = 5.6161 < 7.3009] w=0.1078 to align # Constraint # added constraint: constraint((T0286)R49.CB, (T0286)S64.CB) [> 3.4076 = 5.6793 < 7.3831] w=0.1076 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)Y138.CB) [> 4.3325 = 7.2208 < 9.3870] w=0.1071 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)G92.CA) [> 4.6169 = 7.6948 < 10.0032] w=0.1070 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)G176.CA) [> 3.5020 = 5.8368 < 7.5878] w=0.1063 to align # Constraint # added constraint: constraint((T0286)S162.CB, (T0286)D175.CB) [> 2.9204 = 4.8674 < 6.3276] w=0.1059 to align # Constraint # added constraint: constraint((T0286)L161.CB, (T0286)G183.CA) [> 3.1562 = 5.2604 < 6.8385] w=0.1051 to align # Constraint # added constraint: constraint((T0286)L123.CB, (T0286)V159.CB) [> 4.3151 = 7.1918 < 9.3494] w=0.1042 to align # Constraint # added constraint: constraint((T0286)D85.CB, (T0286)L199.CB) [> 3.3205 = 5.5341 < 7.1943] w=0.1035 to align # Constraint # added constraint: constraint((T0286)G51.CA, (T0286)Q70.CB) [> 3.7509 = 6.2515 < 8.1269] w=0.1035 to align # Constraint # added constraint: constraint((T0286)L161.CB, (T0286)Y184.CB) [> 2.8262 = 4.7103 < 6.1234] w=0.1026 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)N94.CB) [> 3.7194 = 6.1990 < 8.0587] w=0.1003 to align # Constraint # added constraint: constraint((T0286)V159.CB, (T0286)T195.CB) [> 3.9861 = 6.6435 < 8.6365] w=0.0982 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)S173.CB) [> 3.9695 = 6.6159 < 8.6007] w=0.0982 to align # Constraint # added constraint: constraint((T0286)G21.CA, (T0286)S173.CB) [> 4.1709 = 6.9514 < 9.0369] w=0.0982 to align # Constraint # added constraint: constraint((T0286)Q48.CB, (T0286)H63.CB) [> 4.4844 = 7.4740 < 9.7162] w=0.0966 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)L202.CB) [> 4.4372 = 7.3952 < 9.6138] w=0.0965 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)V86.CB) [> 4.2463 = 7.0772 < 9.2003] w=0.0957 to align # Constraint # added constraint: constraint((T0286)I42.CB, (T0286)V87.CB) [> 4.4102 = 7.3504 < 9.5555] w=0.0957 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)L177.CB) [> 3.5707 = 5.9511 < 7.7365] w=0.0951 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)G176.CA) [> 4.2716 = 7.1194 < 9.2552] w=0.0951 to align # Constraint # added constraint: constraint((T0286)N76.CB, (T0286)D112.CB) [> 4.6610 = 7.7684 < 10.0989] w=0.0947 to align # Constraint # added constraint: constraint((T0286)S162.CB, (T0286)L177.CB) [> 3.6830 = 6.1383 < 7.9798] w=0.0933 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)I91.CB) [> 4.1631 = 6.9385 < 9.0201] w=0.0929 to align # Constraint # added constraint: constraint((T0286)K160.CB, (T0286)G183.CA) [> 4.0981 = 6.8301 < 8.8792] w=0.0916 to align # Constraint # added constraint: constraint((T0286)P56.CB, (T0286)G65.CA) [> 3.6084 = 6.0141 < 7.8183] w=0.0883 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)V159.CB) [> 3.5669 = 5.9449 < 7.7284] w=0.0868 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)Y157.CB) [> 4.1948 = 6.9913 < 9.0887] w=0.0856 to align # Constraint # added constraint: constraint((T0286)F158.CB, (T0286)I190.CB) [> 3.3460 = 5.5767 < 7.2497] w=0.0849 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)R49.CB) [> 3.3122 = 5.5204 < 7.1765] w=0.0842 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)L177.CB) [> 4.0993 = 6.8321 < 8.8817] w=0.0842 to align # Constraint # added constraint: constraint((T0286)E23.CB, (T0286)S173.CB) [> 3.9595 = 6.5992 < 8.5790] w=0.0842 to align # Constraint # added constraint: constraint((T0286)E23.CB, (T0286)W174.CB) [> 3.8770 = 6.4617 < 8.4002] w=0.0842 to align # Constraint # added constraint: constraint((T0286)G25.CA, (T0286)H178.CB) [> 3.8561 = 6.4268 < 8.3549] w=0.0842 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)R49.CB) [> 4.2676 = 7.1126 < 9.2464] w=0.0830 to align # Constraint # added constraint: constraint((T0286)Q48.CB, (T0286)G65.CA) [> 3.3395 = 5.5659 < 7.2357] w=0.0825 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)D85.CB) [> 3.1283 = 5.2138 < 6.7779] w=0.0825 to align # Constraint # added constraint: constraint((T0286)V86.CB, (T0286)V125.CB) [> 4.1425 = 6.9041 < 8.9753] w=0.0825 to align # Constraint # added constraint: constraint((T0286)W131.CB, (T0286)I172.CB) [> 3.8711 = 6.4519 < 8.3874] w=0.0810 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)S173.CB) [> 3.7960 = 6.3267 < 8.2246] w=0.0809 to align # Constraint # added constraint: constraint((T0286)W131.CB, (T0286)K160.CB) [> 4.1435 = 6.9059 < 8.9776] w=0.0807 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)L202.CB) [> 4.2569 = 7.0949 < 9.2234] w=0.0806 to align # Constraint # added constraint: constraint((T0286)N94.CB, (T0286)Y129.CB) [> 3.5191 = 5.8652 < 7.6248] w=0.0779 to align # Constraint # added constraint: constraint((T0286)L55.CB, (T0286)S64.CB) [> 3.5652 = 5.9421 < 7.7247] w=0.0754 to align # Constraint # added constraint: constraint((T0286)S53.CB, (T0286)S64.CB) [> 3.7457 = 6.2429 < 8.1158] w=0.0744 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)Y129.CB) [> 3.6896 = 6.1493 < 7.9941] w=0.0736 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)Y129.CB) [> 2.8294 = 4.7156 < 6.1303] w=0.0736 to align # Constraint # added constraint: constraint((T0286)S54.CB, (T0286)G65.CA) [> 3.1780 = 5.2966 < 6.8856] w=0.0736 to align # Constraint # added constraint: constraint((T0286)T67.CB, (T0286)L110.CB) [> 4.4503 = 7.4171 < 9.6423] w=0.0736 to align # Constraint # added constraint: constraint((T0286)K4.CB, (T0286)L40.CB) [> 3.1287 = 5.2145 < 6.7789] w=0.0708 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)D175.CB) [> 4.0726 = 6.7877 < 8.8239] w=0.0702 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)S173.CB) [> 4.6227 = 7.7045 < 10.0158] w=0.0702 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)Q48.CB) [> 1.9703 = 3.2838 < 4.2689] w=0.0702 to align # Constraint # added constraint: constraint((T0286)G21.CA, (T0286)L177.CB) [> 4.7859 = 7.9765 < 10.3695] w=0.0702 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)L89.CB) [> 3.5763 = 5.9604 < 7.7486] w=0.0702 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)G176.CA) [> 3.3215 = 5.5359 < 7.1966] w=0.0693 to align # Constraint # added constraint: constraint((T0286)G20.CA, (T0286)W174.CB) [> 3.8276 = 6.3793 < 8.2931] w=0.0688 to align # Constraint # added constraint: constraint((T0286)M24.CB, (T0286)W174.CB) [> 4.1814 = 6.9691 < 9.0598] w=0.0688 to align # Constraint # added constraint: constraint((T0286)L34.CB, (T0286)S180.CB) [> 4.5756 = 7.6259 < 9.9137] w=0.0685 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)W90.CB) [> 4.2953 = 7.1589 < 9.3066] w=0.0671 to align # Constraint # added constraint: constraint((T0286)G18.CA, (T0286)D95.CB) [> 2.6974 = 4.4956 < 5.8443] w=0.0655 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L89.CB) [> 4.2552 = 7.0920 < 9.2196] w=0.0649 to align # Constraint # added constraint: constraint((T0286)D95.CB, (T0286)Y128.CB) [> 3.9986 = 6.6644 < 8.6637] w=0.0637 to align # Constraint # added constraint: constraint((T0286)W174.CB, (T0286)Y184.CB) [> 3.2580 = 5.4300 < 7.0590] w=0.0637 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)W90.CB) [> 3.9502 = 6.5837 < 8.5588] w=0.0630 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)I75.CB) [> 3.4927 = 5.8212 < 7.5676] w=0.0599 to align # Constraint # added constraint: constraint((T0286)P130.CB, (T0286)A150.CB) [> 4.4221 = 7.3702 < 9.5813] w=0.0599 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)S64.CB) [> 4.4665 = 7.4442 < 9.6774] w=0.0559 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)F158.CB) [> 3.0903 = 5.1504 < 6.6955] w=0.0553 to align # Constraint # added constraint: constraint((T0286)I172.CB, (T0286)A188.CB) [> 3.3400 = 5.5667 < 7.2367] w=0.0550 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)P69.CB) [> 4.0193 = 6.6989 < 8.7085] w=0.0549 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)G176.CA) [> 4.6592 = 7.7654 < 10.0950] w=0.0548 to align # Constraint # added constraint: constraint((T0286)H63.CB, (T0286)G93.CA) [> 4.3442 = 7.2404 < 9.4125] w=0.0545 to align # Constraint # added constraint: constraint((T0286)T36.CB, (T0286)A72.CB) [> 4.4356 = 7.3926 < 9.6104] w=0.0545 to align # Constraint # added constraint: constraint((T0286)L97.CB, (T0286)I135.CB) [> 4.1799 = 6.9665 < 9.0565] w=0.0544 to align # Constraint # added constraint: constraint((T0286)P56.CB, (T0286)T67.CB) [> 3.5017 = 5.8361 < 7.5870] w=0.0532 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)H60.CB) [> 2.7237 = 4.5396 < 5.9015] w=0.0527 to align # Constraint # added constraint: constraint((T0286)S41.CB, (T0286)E61.CB) [> 4.7334 = 7.8890 < 10.2557] w=0.0527 to align # Constraint # added constraint: constraint((T0286)I42.CB, (T0286)D59.CB) [> 2.8068 = 4.6781 < 6.0815] w=0.0527 to align # Constraint # added constraint: constraint((T0286)D43.CB, (T0286)H60.CB) [> 3.9013 = 6.5022 < 8.4529] w=0.0527 to align # Constraint # added constraint: constraint((T0286)D43.CB, (T0286)E61.CB) [> 2.5016 = 4.1693 < 5.4201] w=0.0527 to align # Constraint # added constraint: constraint((T0286)F44.CB, (T0286)E61.CB) [> 4.4778 = 7.4631 < 9.7020] w=0.0527 to align # Constraint # added constraint: constraint((T0286)S50.CB, (T0286)W66.CB) [> 4.1459 = 6.9098 < 8.9828] w=0.0526 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)F124.CB) [> 3.5670 = 5.9450 < 7.7284] w=0.0525 to align # Constraint # added constraint: constraint((T0286)P52.CB, (T0286)T67.CB) [> 3.7102 = 6.1836 < 8.0387] w=0.0517 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)I196.CB) [> 4.6009 = 7.6682 < 9.9686] w=0.0491 to align # Constraint # added constraint: constraint((T0286)I91.CB, (T0286)I172.CB) [> 4.6449 = 7.7415 < 10.0640] w=0.0491 to align # Constraint # added constraint: constraint((T0286)L55.CB, (T0286)G65.CA) [> 4.1765 = 6.9608 < 9.0490] w=0.0491 to align # Constraint # added constraint: constraint((T0286)S53.CB, (T0286)G65.CA) [> 4.5311 = 7.5518 < 9.8173] w=0.0491 to align # Constraint # added constraint: constraint((T0286)P52.CB, (T0286)L98.CB) [> 3.3835 = 5.6392 < 7.3310] w=0.0491 to align # Constraint # added constraint: constraint((T0286)T16.CB, (T0286)G93.CA) [> 4.2025 = 7.0041 < 9.1054] w=0.0488 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)A126.CB) [> 3.0144 = 5.0240 < 6.5311] w=0.0467 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)F88.CB) [> 4.7018 = 7.8364 < 10.1873] w=0.0449 to align # Constraint # added constraint: constraint((T0286)T122.CB, (T0286)L202.CB) [> 3.4612 = 5.7686 < 7.4992] w=0.0427 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)G93.CA) [> 4.4142 = 7.3571 < 9.5642] w=0.0421 to align # Constraint # added constraint: constraint((T0286)P132.CB, (T0286)F166.CB) [> 4.7106 = 7.8510 < 10.2063] w=0.0421 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)R49.CB) [> 4.7166 = 7.8610 < 10.2193] w=0.0421 to align # Constraint # added constraint: constraint((T0286)E17.CB, (T0286)S50.CB) [> 3.2312 = 5.3854 < 7.0010] w=0.0421 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)S50.CB) [> 3.0661 = 5.1102 < 6.6432] w=0.0421 to align # Constraint # added constraint: constraint((T0286)G22.CA, (T0286)W174.CB) [> 3.8297 = 6.3829 < 8.2977] w=0.0421 to align # Constraint # added constraint: constraint((T0286)W174.CB, (T0286)Y192.CB) [> 3.3147 = 5.5244 < 7.1817] w=0.0412 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)I91.CB) [> 4.2157 = 7.0262 < 9.1341] w=0.0409 to align # Constraint # added constraint: constraint((T0286)K160.CB, (T0286)I172.CB) [> 3.8689 = 6.4482 < 8.3826] w=0.0409 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)P52.CB) [> 4.2466 = 7.0777 < 9.2010] w=0.0402 to align # Constraint # added constraint: constraint((T0286)L97.CB, (T0286)D127.CB) [> 2.6647 = 4.4412 < 5.7736] w=0.0389 to align # Constraint # added constraint: constraint((T0286)W90.CB, (T0286)L123.CB) [> 4.5063 = 7.5105 < 9.7636] w=0.0385 to align # Constraint # added constraint: constraint((T0286)G92.CA, (T0286)V125.CB) [> 3.2554 = 5.4256 < 7.0533] w=0.0385 to align # Constraint # added constraint: constraint((T0286)G93.CA, (T0286)V125.CB) [> 3.4122 = 5.6870 < 7.3932] w=0.0385 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)L89.CB) [> 3.3416 = 5.5693 < 7.2401] w=0.0380 to align # Constraint # added constraint: constraint((T0286)M19.CB, (T0286)D175.CB) [> 4.6405 = 7.7342 < 10.0544] w=0.0281 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)S50.CB) [> 3.8029 = 6.3382 < 8.2397] w=0.0281 to align # Constraint # added constraint: constraint((T0286)P119.CB, (T0286)K155.CB) [> 3.6814 = 6.1356 < 7.9763] w=0.0280 to align # Constraint # added constraint: constraint((T0286)T5.CB, (T0286)G39.CA) [> 4.4862 = 7.4770 < 9.7201] w=0.0280 to align # Constraint # added constraint: constraint((T0286)S3.CB, (T0286)S41.CB) [> 4.2100 = 7.0167 < 9.1217] w=0.0280 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)F124.CB) [> 4.4608 = 7.4346 < 9.6650] w=0.0277 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)D127.CB) [> 3.6742 = 6.1236 < 7.9607] w=0.0277 to align # Constraint # added constraint: constraint((T0286)F166.CB, (T0286)D175.CB) [> 3.0966 = 5.1609 < 6.7092] w=0.0273 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)D175.CB) [> 2.4647 = 4.1078 < 5.3401] w=0.0272 to align # Constraint # added constraint: constraint((T0286)Y129.CB, (T0286)W174.CB) [> 3.8363 = 6.3938 < 8.3120] w=0.0272 to align # Constraint # added constraint: constraint((T0286)Y128.CB, (T0286)L177.CB) [> 4.2571 = 7.0951 < 9.2236] w=0.0272 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)G93.CA) [> 4.4436 = 7.4060 < 9.6278] w=0.0269 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)V121.CB) [> 4.3269 = 7.2116 < 9.3750] w=0.0269 to align # Constraint # added constraint: constraint((T0286)F88.CB, (T0286)T122.CB) [> 4.0441 = 6.7402 < 8.7623] w=0.0269 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)T122.CB) [> 3.7859 = 6.3098 < 8.2027] w=0.0269 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)W66.CB) [> 3.8229 = 6.3716 < 8.2830] w=0.0266 to align # Constraint # added constraint: constraint((T0286)S50.CB, (T0286)H63.CB) [> 3.7103 = 6.1838 < 8.0389] w=0.0265 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)H60.CB) [> 2.9831 = 4.9718 < 6.4634] w=0.0262 to align # Constraint # added constraint: constraint((T0286)I71.CB, (T0286)L96.CB) [> 3.6421 = 6.0702 < 7.8912] w=0.0253 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)L96.CB) [> 3.4287 = 5.7144 < 7.4288] w=0.0253 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)L96.CB) [> 3.0936 = 5.1560 < 6.7028] w=0.0253 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)G92.CA) [> 4.1421 = 6.9036 < 8.9746] w=0.0245 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)G93.CA) [> 4.3702 = 7.2836 < 9.4687] w=0.0245 to align # Constraint # added constraint: constraint((T0286)D127.CB, (T0286)I172.CB) [> 2.5044 = 4.1740 < 5.4261] w=0.0216 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)E61.CB) [> 4.2647 = 7.1078 < 9.2401] w=0.0140 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)E61.CB) [> 4.1407 = 6.9012 < 8.9716] w=0.0140 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)E61.CB) [> 3.4192 = 5.6987 < 7.4083] w=0.0140 to align # Constraint # added constraint: constraint((T0286)L102.CB, (T0286)G176.CA) [> 4.6976 = 7.8293 < 10.1781] w=0.0140 to align # Constraint # added constraint: constraint((T0286)A2.CB, (T0286)S41.CB) [> 3.5458 = 5.9096 < 7.6825] w=0.0140 to align # Constraint # added constraint: constraint((T0286)M1.CB, (T0286)S41.CB) [> 4.7318 = 7.8863 < 10.2521] w=0.0140 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)V86.CB) [> 4.6910 = 7.8183 < 10.1638] w=0.0140 to align # Constraint # added constraint: constraint((T0286)D43.CB, (T0286)V121.CB) [> 4.3689 = 7.2815 < 9.4660] w=0.0140 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)V121.CB) [> 3.8765 = 6.4609 < 8.3991] w=0.0140 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)T122.CB) [> 3.7015 = 6.1692 < 8.0200] w=0.0140 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)L123.CB) [> 2.7734 = 4.6223 < 6.0089] w=0.0140 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)F124.CB) [> 4.2162 = 7.0270 < 9.1350] w=0.0140 to align # Constraint # added constraint: constraint((T0286)I8.CB, (T0286)V125.CB) [> 3.8545 = 6.4242 < 8.3515] w=0.0140 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)L123.CB) [> 4.2666 = 7.1109 < 9.2442] w=0.0140 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)F124.CB) [> 2.6212 = 4.3687 < 5.6794] w=0.0140 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)V125.CB) [> 4.1706 = 6.9510 < 9.0363] w=0.0140 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)F124.CB) [> 4.5505 = 7.5841 < 9.8594] w=0.0140 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)V125.CB) [> 2.7362 = 4.5604 < 5.9285] w=0.0140 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)D127.CB) [> 3.9682 = 6.6136 < 8.5977] w=0.0140 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)V125.CB) [> 4.1460 = 6.9100 < 8.9830] w=0.0140 to align # Constraint # added constraint: constraint((T0286)V11.CB, (T0286)Y128.CB) [> 2.2033 = 3.6722 < 4.7739] w=0.0140 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)D127.CB) [> 2.6076 = 4.3460 < 5.6498] w=0.0140 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)Y128.CB) [> 2.3921 = 3.9869 < 5.1829] w=0.0140 to align # Constraint # added constraint: constraint((T0286)G12.CA, (T0286)Y129.CB) [> 4.7219 = 7.8699 < 10.2309] w=0.0140 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)V86.CB) [> 4.5194 = 7.5323 < 9.7919] w=0.0140 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)V125.CB) [> 4.7519 = 7.9198 < 10.2958] w=0.0140 to align # Constraint # added constraint: constraint((T0286)D13.CB, (T0286)D127.CB) [> 3.8321 = 6.3869 < 8.3030] w=0.0140 to align # Constraint # added constraint: constraint((T0286)S14.CB, (T0286)I42.CB) [> 3.6052 = 6.0086 < 7.8112] w=0.0140 to align # Constraint # added constraint: constraint((T0286)D95.CB, (T0286)D175.CB) [> 2.6904 = 4.4839 < 5.8291] w=0.0140 to align # Constraint # added constraint: constraint((T0286)L96.CB, (T0286)D175.CB) [> 4.3063 = 7.1772 < 9.3304] w=0.0140 to align # Constraint # added constraint: constraint((T0286)L98.CB, (T0286)D175.CB) [> 3.9256 = 6.5427 < 8.5055] w=0.0140 to align # Constraint # added constraint: constraint((T0286)P10.CB, (T0286)W66.CB) [> 3.9083 = 6.5139 < 8.4680] w=0.0138 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)W66.CB) [> 4.0230 = 6.7050 < 8.7165] w=0.0138 to align # Constraint # added constraint: constraint((T0286)L89.CB, (T0286)G100.CA) [> 4.5723 = 7.6205 < 9.9066] w=0.0135 to align # Constraint # added constraint: constraint((T0286)M9.CB, (T0286)G100.CA) [> 3.6515 = 6.0859 < 7.9116] w=0.0135 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)F88.CB) [> 3.9222 = 6.5371 < 8.4982] w=0.0135 to align # Constraint # added constraint: constraint((T0286)C15.CB, (T0286)L89.CB) [> 4.1240 = 6.8734 < 8.9354] w=0.0135 to align # Constraint # added constraint: constraint((T0286)G21.CA, (T0286)G176.CA) [> 4.4493 = 7.4155 < 9.6401] w=0.0127 to align # Constraint # added constraint: constraint((T0286)I164.CB, (T0286)D175.CB) [> 3.4685 = 5.7808 < 7.5150] w=0.0127 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0286/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0286/decoys/ # ReadConformPDB reading from PDB file chimera-15-10.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-15-17.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0286)Q37.C and (T0286)A38.N only 0 apart, marking (T0286)A38.N as missing WARNING: atoms too close: (T0286)A38.N and (T0286)A38.CA only 0 apart, marking (T0286)A38.CA as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)A38.CA only 0 apart, marking (T0286)A38.CA as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)A38.CB only 0 apart, marking (T0286)A38.CB as missing WARNING: atoms too close: (T0286)A38.N and (T0286)A38.CB only 0 apart, marking (T0286)A38.CB as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)A38.CB only 0 apart, marking (T0286)A38.CB as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)A38.O only 0 apart, marking (T0286)A38.O as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)A38.O only 0 apart, marking (T0286)A38.O as missing WARNING: atoms too close: (T0286)A38.N and (T0286)A38.O only 0 apart, marking (T0286)A38.O as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)A38.O only 0 apart, marking (T0286)A38.O as missing WARNING: atoms too close: (T0286)A38.O and (T0286)A38.C only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)A38.C only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)A38.C only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)A38.N and (T0286)A38.C only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)A38.C only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)A38.C and (T0286)G39.N only 0 apart, marking (T0286)A38.C as missing WARNING: atoms too close: (T0286)A38.O and (T0286)G39.N only 0 apart, marking (T0286)A38.O as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)G39.N only 0 apart, marking (T0286)A38.CB as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)G39.N only 0 apart, marking (T0286)A38.CA as missing WARNING: atoms too close: (T0286)A38.N and (T0286)G39.N only 0 apart, marking (T0286)A38.N as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)G39.N only 0 apart, marking (T0286)G39.N as missing WARNING: atoms too close: (T0286)G39.N and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)A38.C and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)A38.O and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)A38.N and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)G39.CA only 0 apart, marking (T0286)G39.CA as missing WARNING: atoms too close: (T0286)G39.CA and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)G39.N and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)A38.C and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)A38.O and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)A38.N and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)G39.O only 0 apart, marking (T0286)G39.O as missing WARNING: atoms too close: (T0286)G39.O and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)G39.CA and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)G39.N and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)A38.C and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)A38.O and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)A38.CB and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)A38.CA and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)A38.N and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing WARNING: atoms too close: (T0286)Q37.C and (T0286)G39.C only 0 apart, marking (T0286)G39.C as missing # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 215, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 411, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 215, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 411, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 Skipped atom 215, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 411, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_FLEX_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 13 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 215, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 423, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 Skipped atom 150, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 154, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 156, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz WARNING: atom 413 has residue number 7 < previous residue 205 in servers/gtg_AL1.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 WARNING: atom 345 has residue number 7 < previous residue 167 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL3.pdb.gz WARNING: atom 421 has residue number 7 < previous residue 205 in servers/gtg_AL3.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 WARNING: atom 389 has residue number 7 < previous residue 205 in servers/gtg_AL4.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 WARNING: atom 209 has residue number 7 < previous residue 204 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 898 has residue number 1 < previous residue 205 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0286 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 254 model score 0.1252 model score 0.1047 model score 0.4728 model score -0.1089 model score 0.4211 model score -0.0718 model score 0.3898 model score 0.3786 model score 0.3465 model score 0.3665 model score 0.1692 model score 0.1691 model score 0.4042 model score 0.1691 model score 0.1408 model score -0.1531 model score 0.5390 model score 0.0545 model score 0.0828 model score -0.2750 model score 0.1429 model score 0.8626 model score 1.2785 model score 1.2510 model score 1.4099 model score 1.2987 model score 1.1048 model score -0.2098 model score 0.1934 model score 0.0065 model score -0.1171 model score 0.0334 model score 0.1991 model score -0.1511 model score -0.1098 model score -0.0512 model score -0.1436 model score -0.0567 model score -0.0234 model score -0.1368 model score -0.1779 model score -0.0772 model score 0.0841 model score 1.2704 model score 1.2814 model score 1.2781 model score 1.2777 model score 1.2776 model score 0.1810 model score 0.1118 model score -0.1424 model score -0.1283 model score -0.0056 model score -0.0955 model score 0.3402 model score 0.1605 model score -0.0963 model score 0.0261 model score -0.1514 model score -0.1296 model score -0.2102 model score 0.2988 model score 0.3652 model score 1.2718 model score 1.2721 model score 1.2718 model score 1.2719 model score 1.2721 model score 1.2721 model score 1.2718 model score 1.2721 model score 1.2753 model score 1.2800 model score 2.3592 model score 0.2583 model score 0.4396 model score 0.4240 model score 0.9902 model score 0.4352 model score 1.2717 model score 1.2721 model score 1.2748 model score 1.2768 model score 1.2747 model score -0.0955 model score 0.3402 model score 0.1605 model score -0.0963 model score 0.0261 model score -0.1659 model score 0.2567 model score 0.1693 model score -0.0524 model score -0.0417 model score -0.0917 model score -0.0524 model score 0.7418 model score 0.3876 model score 1.0081 model score 1.4514 model score 1.0065 model score 0.4462 model score -0.1109 model score 0.4377 model score -0.0794 model score -0.1158 model score 0.0849 model score -0.0945 model score -0.1474 model score -0.1097 model score -0.1910 model score 0.0786 model score 0.1335 model score 0.1548 model score 0.0797 model score 0.1085 model score -0.0553 model score 1.8848 model score 1.9835 model score 1.6221 model score 1.9024 model score 1.8951 model score -0.0929 model score -0.0797 model score -0.0804 model score -0.1050 model score -0.0962 model score 0.1356 model score 0.1735 model score 0.2358 model score 0.2104 model score 0.2276 model score -0.2037 model score 0.3309 model score 0.1770 model score -0.1306 model score -0.0246 model score -0.0619 model score -0.0002 model score -0.0002 model score -0.0002 model score -0.0002 model score -0.0034 model score -0.0853 model score -0.1314 model score -0.1649 model score 0.2155 model score -0.0756 model score -0.0771 model score 0.0424 model score -0.0071 model score 0.1164 model score -0.0553 model score -0.0272 model score 0.0332 model score 0.0579 model score 0.0219 model score 0.1181 model score -0.0694 model score -0.0436 model score -0.0205 model score 0.0047 model score -0.0672 model score -0.1306 model score -0.1314 model score -0.0853 model score 0.1231 model score 0.0815 model score 0.3685 model score 0.3312 model score 0.3642 model score 0.1249 model score 0.1295 model score 1.2717 model score 1.2718 model score 1.2718 model score 1.2718 model score 1.2717 model score 1.2703 model score 1.2701 model score 1.2702 model score 1.2702 model score 1.2699 model score 0.3457 model score -0.2524 model score 0.0506 model score 0.1071 model score -0.0882 model score -0.0553 model score -0.0801 model score 0.3700 model score 0.0424 model score 0.0369 model score -0.1117 model score -0.1067 model score 0.1114 model score -0.0648 model score 0.1101 model score -0.1631 model score -0.1733 model score 0.2955 model score -0.0513 model score 0.0431 model score 1.2717 model score 1.2718 model score 1.2719 model score 1.2720 model score 1.2718 model score -0.1336 model score 1.2717 model score 1.2718 model score 1.2719 model score 1.2720 model score 1.2718 model score -0.2847 model score -0.2026 model score -0.1257 model score -0.1433 model score -0.2226 model score -0.2207 model score -0.2054 model score 1.2702 model score 1.2703 model score 1.2721 model score 1.2701 model score 1.2695 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.1237 model score -0.1744 model score 0.1474 model score 0.2363 model score -0.1484 model score 1.7927 model score 0.0241 model score 0.0001 model score -0.0174 model score -0.0273 model score 0.0101 model score 0.0052 model score 0.1296 model score 0.1540 model score -0.0016 model score 0.1542 model score -0.1697 model score -0.1737 model score -0.1600 model score -0.1607 model score -0.0709 model score -0.0212 model score -0.1455 weight: 0.8605 eval: 0.1252 min: -0.2847 max: 2.3592 weight: 0.8675 eval: 0.1047 min: -0.2847 max: 2.3592 weight: 0.7421 eval: 0.4728 min: -0.2847 max: 2.3592 weight: 0.9402 eval: -0.1089 min: -0.2847 max: 2.3592 weight: 0.7597 eval: 0.4211 min: -0.2847 max: 2.3592 weight: 0.9275 eval: -0.0718 min: -0.2847 max: 2.3592 weight: 0.7704 eval: 0.3898 min: -0.2847 max: 2.3592 weight: 0.7742 eval: 0.3786 min: -0.2847 max: 2.3592 weight: 0.7851 eval: 0.3465 min: -0.2847 max: 2.3592 weight: 0.7783 eval: 0.3665 min: -0.2847 max: 2.3592 weight: 0.8455 eval: 0.1692 min: -0.2847 max: 2.3592 weight: 0.8455 eval: 0.1691 min: -0.2847 max: 2.3592 weight: 0.7655 eval: 0.4042 min: -0.2847 max: 2.3592 weight: 0.8455 eval: 0.1691 min: -0.2847 max: 2.3592 weight: 0.8552 eval: 0.1408 min: -0.2847 max: 2.3592 weight: 0.9552 eval: -0.1531 min: -0.2847 max: 2.3592 weight: 0.7196 eval: 0.5390 min: -0.2847 max: 2.3592 weight: 0.8845 eval: 0.0545 min: -0.2847 max: 2.3592 weight: 0.8749 eval: 0.0828 min: -0.2847 max: 2.3592 weight: 0.9967 eval: -0.2750 min: -0.2847 max: 2.3592 weight: 0.8544 eval: 0.1429 min: -0.2847 max: 2.3592 weight: 0.6095 eval: 0.8626 min: -0.2847 max: 2.3592 weight: 0.4679 eval: 1.2785 min: -0.2847 max: 2.3592 weight: 0.4772 eval: 1.2510 min: -0.2847 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eval: 1.8848 min: -0.2847 max: 2.3592 weight: 0.2279 eval: 1.9835 min: -0.2847 max: 2.3592 weight: 0.3509 eval: 1.6221 min: -0.2847 max: 2.3592 weight: 0.2555 eval: 1.9024 min: -0.2847 max: 2.3592 weight: 0.2580 eval: 1.8951 min: -0.2847 max: 2.3592 weight: 0.9347 eval: -0.0929 min: -0.2847 max: 2.3592 weight: 0.9302 eval: -0.0797 min: -0.2847 max: 2.3592 weight: 0.9305 eval: -0.0804 min: -0.2847 max: 2.3592 weight: 0.9388 eval: -0.1050 min: -0.2847 max: 2.3592 weight: 0.9359 eval: -0.0962 min: -0.2847 max: 2.3592 weight: 0.8569 eval: 0.1356 min: -0.2847 max: 2.3592 weight: 0.8440 eval: 0.1735 min: -0.2847 max: 2.3592 weight: 0.8228 eval: 0.2358 min: -0.2847 max: 2.3592 weight: 0.8315 eval: 0.2104 min: -0.2847 max: 2.3592 weight: 0.8256 eval: 0.2276 min: -0.2847 max: 2.3592 weight: 0.9724 eval: -0.2037 min: -0.2847 max: 2.3592 weight: 0.7905 eval: 0.3309 min: -0.2847 max: 2.3592 weight: 0.8428 eval: 0.1770 min: -0.2847 max: 2.3592 weight: 0.9475 eval: -0.1306 min: -0.2847 max: 2.3592 weight: 0.9115 eval: -0.0246 min: -0.2847 max: 2.3592 weight: 0.9242 eval: -0.0619 min: -0.2847 max: 2.3592 weight: 0.9031 eval: -0.0002 min: -0.2847 max: 2.3592 weight: 0.9031 eval: -0.0002 min: -0.2847 max: 2.3592 weight: 0.9031 eval: -0.0002 min: -0.2847 max: 2.3592 weight: 0.9031 eval: -0.0002 min: -0.2847 max: 2.3592 weight: 0.9042 eval: -0.0034 min: -0.2847 max: 2.3592 weight: 0.9321 eval: -0.0853 min: -0.2847 max: 2.3592 weight: 0.9478 eval: -0.1314 min: -0.2847 max: 2.3592 weight: 0.9592 eval: -0.1649 min: -0.2847 max: 2.3592 weight: 0.8297 eval: 0.2155 min: -0.2847 max: 2.3592 weight: 0.9288 eval: -0.0756 min: -0.2847 max: 2.3592 weight: 0.9293 eval: -0.0771 min: -0.2847 max: 2.3592 weight: 0.8887 eval: 0.0424 min: -0.2847 max: 2.3592 weight: 0.9055 eval: -0.0071 min: -0.2847 max: 2.3592 weight: 0.8635 eval: 0.1164 min: -0.2847 max: 2.3592 weight: 0.9219 eval: -0.0553 min: -0.2847 max: 2.3592 weight: 0.9124 eval: -0.0272 min: -0.2847 max: 2.3592 weight: 0.8918 eval: 0.0332 min: -0.2847 max: 2.3592 weight: 0.8834 eval: 0.0579 min: -0.2847 max: 2.3592 weight: 0.8956 eval: 0.0219 min: -0.2847 max: 2.3592 weight: 0.8629 eval: 0.1181 min: -0.2847 max: 2.3592 weight: 0.9267 eval: -0.0694 min: -0.2847 max: 2.3592 weight: 0.9179 eval: -0.0436 min: -0.2847 max: 2.3592 weight: 0.9101 eval: -0.0205 min: -0.2847 max: 2.3592 weight: 0.9015 eval: 0.0047 min: -0.2847 max: 2.3592 weight: 0.9260 eval: -0.0672 min: -0.2847 max: 2.3592 weight: 0.9475 eval: -0.1306 min: -0.2847 max: 2.3592 weight: 0.9478 eval: -0.1314 min: -0.2847 max: 2.3592 weight: 0.9321 eval: -0.0853 min: -0.2847 max: 2.3592 weight: 0.8612 eval: 0.1231 min: -0.2847 max: 2.3592 weight: 0.8753 eval: 0.0815 min: -0.2847 max: 2.3592 weight: 0.7777 eval: 0.3685 min: -0.2847 max: 2.3592 weight: 0.7904 eval: 0.3312 min: -0.2847 max: 2.3592 weight: 0.7791 eval: 0.3642 min: -0.2847 max: 2.3592 weight: 0.8606 eval: 0.1249 min: -0.2847 max: 2.3592 weight: 0.8590 eval: 0.1295 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2717 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2717 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2703 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2701 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2702 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2702 min: -0.2847 max: 2.3592 weight: 0.4708 eval: 1.2699 min: -0.2847 max: 2.3592 weight: 0.7854 eval: 0.3457 min: -0.2847 max: 2.3592 weight: 0.9890 eval: -0.2524 min: -0.2847 max: 2.3592 weight: 0.8859 eval: 0.0506 min: -0.2847 max: 2.3592 weight: 0.8666 eval: 0.1071 min: -0.2847 max: 2.3592 weight: 0.9331 eval: -0.0882 min: -0.2847 max: 2.3592 weight: 0.9219 eval: -0.0553 min: -0.2847 max: 2.3592 weight: 0.9303 eval: -0.0801 min: -0.2847 max: 2.3592 weight: 0.7772 eval: 0.3700 min: -0.2847 max: 2.3592 weight: 0.8887 eval: 0.0424 min: -0.2847 max: 2.3592 weight: 0.8905 eval: 0.0369 min: -0.2847 max: 2.3592 weight: 0.9411 eval: -0.1117 min: -0.2847 max: 2.3592 weight: 0.9394 eval: -0.1067 min: -0.2847 max: 2.3592 weight: 0.8652 eval: 0.1114 min: -0.2847 max: 2.3592 weight: 0.9251 eval: -0.0648 min: -0.2847 max: 2.3592 weight: 0.8656 eval: 0.1101 min: -0.2847 max: 2.3592 weight: 0.9586 eval: -0.1631 min: -0.2847 max: 2.3592 weight: 0.9621 eval: -0.1733 min: -0.2847 max: 2.3592 weight: 0.8025 eval: 0.2955 min: -0.2847 max: 2.3592 weight: 0.9205 eval: -0.0513 min: -0.2847 max: 2.3592 weight: 0.8884 eval: 0.0431 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2717 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.4701 eval: 1.2719 min: -0.2847 max: 2.3592 weight: 0.4701 eval: 1.2720 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.9486 eval: -0.1336 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2717 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 0.4701 eval: 1.2719 min: -0.2847 max: 2.3592 weight: 0.4701 eval: 1.2720 min: -0.2847 max: 2.3592 weight: 0.4702 eval: 1.2718 min: -0.2847 max: 2.3592 weight: 1.0000 eval: -0.2847 min: -0.2847 max: 2.3592 weight: 0.9721 eval: -0.2026 min: -0.2847 max: 2.3592 weight: 0.9459 eval: -0.1257 min: -0.2847 max: 2.3592 weight: 0.9519 eval: -0.1433 min: -0.2847 max: 2.3592 weight: 0.9789 eval: -0.2226 min: -0.2847 max: 2.3592 weight: 0.9782 eval: -0.2207 min: -0.2847 max: 2.3592 weight: 0.9730 eval: -0.2054 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2702 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2703 min: -0.2847 max: 2.3592 weight: 0.4701 eval: 1.2721 min: -0.2847 max: 2.3592 weight: 0.4707 eval: 1.2701 min: -0.2847 max: 2.3592 weight: 0.4709 eval: 1.2695 min: -0.2847 max: 2.3592 weight: 0.4684 eval: 1.2771 min: -0.2847 max: 2.3592 weight: 0.4684 eval: 1.2771 min: -0.2847 max: 2.3592 weight: 0.4684 eval: 1.2771 min: -0.2847 max: 2.3592 weight: 0.4684 eval: 1.2771 min: -0.2847 max: 2.3592 weight: 0.4684 eval: 1.2771 min: -0.2847 max: 2.3592 weight: 0.8610 eval: 0.1237 min: -0.2847 max: 2.3592 weight: 0.9625 eval: -0.1744 min: -0.2847 max: 2.3592 weight: 0.8529 eval: 0.1474 min: -0.2847 max: 2.3592 weight: 0.8227 eval: 0.2363 min: -0.2847 max: 2.3592 weight: 0.9536 eval: -0.1484 min: -0.2847 max: 2.3592 weight: 0.2928 eval: 1.7927 min: -0.2847 max: 2.3592 weight: 0.8949 eval: 0.0241 min: -0.2847 max: 2.3592 weight: 0.9030 eval: 0.0001 min: -0.2847 max: 2.3592 weight: 0.9090 eval: -0.0174 min: -0.2847 max: 2.3592 weight: 0.9124 eval: -0.0273 min: -0.2847 max: 2.3592 weight: 0.8997 eval: 0.0101 min: -0.2847 max: 2.3592 weight: 0.9013 eval: 0.0052 min: -0.2847 max: 2.3592 weight: 0.8590 eval: 0.1296 min: -0.2847 max: 2.3592 weight: 0.8507 eval: 0.1540 min: -0.2847 max: 2.3592 weight: 0.9036 eval: -0.0016 min: -0.2847 max: 2.3592 weight: 0.8506 eval: 0.1542 min: -0.2847 max: 2.3592 weight: 0.9609 eval: -0.1697 min: -0.2847 max: 2.3592 weight: 0.9622 eval: -0.1737 min: -0.2847 max: 2.3592 weight: 0.9576 eval: -0.1600 min: -0.2847 max: 2.3592 weight: 0.9578 eval: -0.1607 min: -0.2847 max: 2.3592 weight: 0.9272 eval: -0.0709 min: -0.2847 max: 2.3592 weight: 0.9103 eval: -0.0212 min: -0.2847 max: 2.3592 weight: 0.9526 eval: -0.1455 min: -0.2847 max: 2.3592 Adding 7378 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -350.5052, CN propb: -350.5052 weights: 0.3791 constraints: 623 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 623 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 623 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6755 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6755 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 7378 # command: