# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/ # command:# Making conformation for sequence T0285 numbered 1 through 125 Created new target T0285 from T0285.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bx0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1bx0A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1bx0A/merged-good-all-a2m.gz for input Trying 1bx0A/merged-good-all-a2m Error: Couldn't open file 1bx0A/merged-good-all-a2m or 1bx0A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ifrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0285 read from 1ifrA/merged-good-all-a2m # 1ifrA read from 1ifrA/merged-good-all-a2m # found chain 1ifrA in training set T0285 34 :AMPNWSLR 1ifrA 463 :SMGNWQIK # choosing archetypes in rotamer library T0285 46 :VDRNNQDLLKRPLPPG 1ifrA 471 :RQNGDDPLLTYRFPPK T0285 62 :IMVLAPRLTAKHPYDK 1ifrA 495 :VTIWAAGAGATHSPPT T0285 78 :VQDRN 1ifrA 514 :WKAQN T0285 91 :TLNDGNSVKVVTISAGRD 1ifrA 519 :TWGCGNSLRTALINSTGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=5 Number of alignments=1 # 1ifrA read from 1ifrA/merged-good-all-a2m # found chain 1ifrA in training set T0285 34 :AMPNWSLR 1ifrA 463 :SMGNWQIK T0285 46 :VDRNNQDLLKRPLPPGI 1ifrA 471 :RQNGDDPLLTYRFPPKF T0285 91 :TLNDGNSVKVVTISAGRDEGPDR 1ifrA 488 :TLKAGQVVTIWAAGAGATHSPPT Number of specific fragments extracted= 3 number of extra gaps= 0 total=8 Number of alignments=2 # 1ifrA read from 1ifrA/merged-good-all-a2m # found chain 1ifrA in training set T0285 34 :AMPNWSLR 1ifrA 463 :SMGNWQIK T0285 46 :VDRNNQDLLKRPLPPG 1ifrA 471 :RQNGDDPLLTYRFPPK T0285 62 :IMVLAPRLTAKHPYDK 1ifrA 495 :VTIWAAGAGATHSPPT T0285 78 :VQDRN 1ifrA 514 :WKAQN T0285 91 :TLNDGNSVKVVTISAGRD 1ifrA 519 :TWGCGNSLRTALINSTGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=13 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kz9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1kz9A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1kz9A/merged-good-all-a2m.gz for input Trying 1kz9A/merged-good-all-a2m Error: Couldn't open file 1kz9A/merged-good-all-a2m or 1kz9A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iq3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iq3A expands to /projects/compbio/data/pdb/1iq3.pdb.gz 1iq3A:# T0285 read from 1iq3A/merged-good-all-a2m # 1iq3A read from 1iq3A/merged-good-all-a2m # adding 1iq3A to template set # found chain 1iq3A in template set T0285 72 :KHPYDKVQDRNRKLY 1iq3A 18 :EEQREYYVNQFRSLQ T0285 93 :NDGNSVK 1iq3A 33 :PDPSSFI T0285 102 :T 1iq3A 40 :S T0285 103 :ISAGRDEGPDRDIIWEMF 1iq3A 48 :FTKSKLSIPELSYIWELS Number of specific fragments extracted= 4 number of extra gaps= 0 total=17 Number of alignments=4 # 1iq3A read from 1iq3A/merged-good-all-a2m # found chain 1iq3A in template set T0285 58 :LPPG 1iq3A 9 :YPDE T0285 67 :PRLTAKHPYDKVQDRNRKLY 1iq3A 13 :PWRITEEQREYYVNQFRSLQ T0285 93 :NDGNSVK 1iq3A 33 :PDPSSFI T0285 102 :T 1iq3A 40 :S T0285 103 :ISAGRDEGPDRDIIWEMF 1iq3A 48 :FTKSKLSIPELSYIWELS Number of specific fragments extracted= 5 number of extra gaps= 0 total=22 Number of alignments=5 # 1iq3A read from 1iq3A/merged-good-all-a2m # found chain 1iq3A in template set T0285 72 :KHPYDKVQDRNRKLY 1iq3A 18 :EEQREYYVNQFRSLQ T0285 93 :NDGNSVK 1iq3A 33 :PDPSSFI T0285 102 :T 1iq3A 40 :S T0285 103 :ISAGRDEGPDRDIIWEMF 1iq3A 48 :FTKSKLSIPELSYIWELS Number of specific fragments extracted= 4 number of extra gaps= 0 total=26 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b65A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b65A expands to /projects/compbio/data/pdb/1b65.pdb.gz 1b65A:# T0285 read from 1b65A/merged-good-all-a2m # 1b65A read from 1b65A/merged-good-all-a2m # adding 1b65A to template set # found chain 1b65A in template set T0285 32 :LRAMPNWSLRFVYIVDRNNQDLLKRPLPPGIMVLAPRLTAKHPY 1b65A 29 :ITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPV T0285 84 :KLYG 1b65A 73 :PVYA T0285 99 :KVVTISAGR 1b65A 77 :GVHRFNGNG Number of specific fragments extracted= 3 number of extra gaps= 0 total=29 Number of alignments=7 # 1b65A read from 1b65A/merged-good-all-a2m # found chain 1b65A in template set T0285 32 :LRAMPNWSLRFVYIVDRNNQDLLKRPLPPGIMVLAPRLTAKHPY 1b65A 29 :ITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPV T0285 84 :KLYG 1b65A 73 :PVYA T0285 99 :KVVTISAGR 1b65A 77 :GVHRFNGNG Number of specific fragments extracted= 3 number of extra gaps= 0 total=32 Number of alignments=8 # 1b65A read from 1b65A/merged-good-all-a2m # found chain 1b65A in template set T0285 32 :LRAMPNWSLRFVYIVDRNNQDLLKRPLPPGIMVLAPRLTAKHPY 1b65A 29 :ITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPV T0285 84 :KLYG 1b65A 73 :PVYA T0285 99 :KVVTISAGR 1b65A 77 :GVHRFNGNG Number of specific fragments extracted= 3 number of extra gaps= 0 total=35 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1frn/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1frn/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1frn/merged-good-all-a2m.gz for input Trying 1frn/merged-good-all-a2m Error: Couldn't open file 1frn/merged-good-all-a2m or 1frn/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qfzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1qfzA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1qfzA/merged-good-all-a2m.gz for input Trying 1qfzA/merged-good-all-a2m Error: Couldn't open file 1qfzA/merged-good-all-a2m or 1qfzA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qgaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1qgaA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1qgaA/merged-good-all-a2m.gz for input Trying 1qgaA/merged-good-all-a2m Error: Couldn't open file 1qgaA/merged-good-all-a2m or 1qgaA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fjrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fjrA expands to /projects/compbio/data/pdb/1fjr.pdb.gz 1fjrA:# T0285 read from 1fjrA/merged-good-all-a2m # 1fjrA read from 1fjrA/merged-good-all-a2m # adding 1fjrA to template set # found chain 1fjrA in template set T0285 25 :TQQLTQDLRA 1fjrA 87 :SDEELAELDP T0285 43 :VYIVDRNNQDLLKRPLPPGIMVLAP 1fjrA 97 :FLNVTLDDGSVSRRHFKNELIVQWD T0285 68 :R 1fjrA 135 :R T0285 69 :LTAKH 1fjrA 143 :LFENG T0285 74 :PYDKVQDRNRKLYGRHITLNDGNS 1fjrA 152 :HFDRVTLRKREYCLQHLTFADGNA T0285 98 :VKVVTISA 1fjrA 178 :IRIAPHNC Number of specific fragments extracted= 6 number of extra gaps= 0 total=41 Number of alignments=10 # 1fjrA read from 1fjrA/merged-good-all-a2m # found chain 1fjrA in template set T0285 25 :TQQLTQDLRA 1fjrA 87 :SDEELAELDP T0285 43 :VYIVDRNNQDLLKRPLPPGIMVLAP 1fjrA 97 :FLNVTLDDGSVSRRHFKNELIVQWD T0285 68 :RLTAKH 1fjrA 135 :REEQDK T0285 74 :PYDKVQDRNRKLYGRHITLNDGNSVKVVTI 1fjrA 152 :HFDRVTLRKREYCLQHLTFADGNATSIRIA Number of specific fragments extracted= 4 number of extra gaps= 0 total=45 Number of alignments=11 # 1fjrA read from 1fjrA/merged-good-all-a2m # found chain 1fjrA in template set T0285 25 :TQQLTQDLRA 1fjrA 87 :SDEELAELDP T0285 43 :VYIVDRNNQDLLKRPLPPGIMVLAP 1fjrA 97 :FLNVTLDDGSVSRRHFKNELIVQWD T0285 68 :R 1fjrA 135 :R T0285 69 :LTAKH 1fjrA 143 :LFENG T0285 74 :PYDKVQDRNRKLYGRHITLNDGNS 1fjrA 152 :HFDRVTLRKREYCLQHLTFADGNA T0285 98 :VKVVTISA 1fjrA 178 :IRIAPHNC Number of specific fragments extracted= 6 number of extra gaps= 0 total=51 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a59A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/2a59A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/2a59A/merged-good-all-a2m.gz for input Trying 2a59A/merged-good-all-a2m Error: Couldn't open file 2a59A/merged-good-all-a2m or 2a59A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bawA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bawA expands to /projects/compbio/data/pdb/1baw.pdb.gz 1bawA:# T0285 read from 1bawA/merged-good-all-a2m # 1bawA read from 1bawA/merged-good-all-a2m # adding 1bawA to template set # found chain 1bawA in template set Warning: unaligning (T0285)S104 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bawA)C89 Warning: unaligning (T0285)A105 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bawA)C89 T0285 35 :MPNWSLRFVY 1bawA 24 :HPGDTVKWVN T0285 55 :KRPLPPGIM 1bawA 34 :NKLPPHNIL T0285 69 :LTAKHPYDKVQDRNRKLY 1bawA 43 :FDDKQVPGASKELADKLS T0285 87 :GRHITLNDGNSVKVVTI 1bawA 71 :SYEITFSSDFPAGTYTY T0285 106 :GRDEGPD 1bawA 90 :APHRGAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=56 Number of alignments=13 # 1bawA read from 1bawA/merged-good-all-a2m # found chain 1bawA in template set T0285 35 :MPNWSLRFVY 1bawA 24 :HPGDTVKWVN T0285 55 :KRPLPPGIMVLAPRL 1bawA 34 :NKLPPHNILFDDKQV T0285 75 :YDKVQDRNRKLY 1bawA 49 :PGASKELADKLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=59 Number of alignments=14 # 1bawA read from 1bawA/merged-good-all-a2m # found chain 1bawA in template set Warning: unaligning (T0285)S104 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bawA)C89 Warning: unaligning (T0285)A105 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bawA)C89 T0285 35 :MPNWSLRFVY 1bawA 24 :HPGDTVKWVN T0285 55 :KRPLPPGIM 1bawA 34 :NKLPPHNIL T0285 69 :LTAKHPYDKVQDRNRKLY 1bawA 43 :FDDKQVPGASKELADKLS T0285 87 :GRHITLNDGNSVKVVTI 1bawA 71 :SYEITFSSDFPAGTYTY T0285 106 :GRDEGPD 1bawA 90 :APHRGAG Number of specific fragments extracted= 5 number of extra gaps= 1 total=64 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c41A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1c41A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1c41A/merged-good-all-a2m.gz for input Trying 1c41A/merged-good-all-a2m Error: Couldn't open file 1c41A/merged-good-all-a2m or 1c41A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qg0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qg0A expands to /projects/compbio/data/pdb/1qg0.pdb.gz 1qg0A:# T0285 read from 1qg0A/merged-good-all-a2m # 1qg0A read from 1qg0A/merged-good-all-a2m # adding 1qg0A to template set # found chain 1qg0A in template set T0285 37 :NWSLRFV 1qg0A 49 :GETWHMV T0285 45 :IVDRN 1qg0A 56 :FSTEG T0285 55 :KRPLPPG 1qg0A 61 :EVPYREG T0285 62 :IMVLAPRLTAKHPYD 1qg0A 70 :IGIVPDGIDKNGKPH T0285 84 :KL 1qg0A 85 :KL T0285 88 :RHITL 1qg0A 87 :RLYSI T0285 93 :NDGNSVKVVTI 1qg0A 100 :GDSKTVSLCVK T0285 104 :SAGRDEGPDRDIIWEMFLENLE 1qg0A 113 :VYTNDAGEVVKGVCSNFLCDLK Number of specific fragments extracted= 8 number of extra gaps= 0 total=72 Number of alignments=16 # 1qg0A read from 1qg0A/merged-good-all-a2m # found chain 1qg0A in template set T0285 64 :VLAPR 1qg0A 72 :IVPDG T0285 79 :QDRNRKLYG 1qg0A 77 :IDKNGKPHK T0285 88 :RHITL 1qg0A 87 :RLYSI T0285 93 :NDGNSVKVVTI 1qg0A 100 :GDSKTVSLCVK T0285 104 :SAGRDEGPDR 1qg0A 113 :VYTNDAGEVV T0285 114 :DIIWEMFLE 1qg0A 124 :GVCSNFLCD T0285 124 :L 1qg0A 133 :L Number of specific fragments extracted= 7 number of extra gaps= 0 total=79 Number of alignments=17 # 1qg0A read from 1qg0A/merged-good-all-a2m # found chain 1qg0A in template set T0285 37 :NWSLRFV 1qg0A 49 :GETWHMV T0285 45 :IVDRN 1qg0A 56 :FSTEG T0285 55 :KRPLPPG 1qg0A 61 :EVPYREG T0285 62 :IMVLAPRLTAKHPYD 1qg0A 70 :IGIVPDGIDKNGKPH T0285 84 :KL 1qg0A 85 :KL T0285 88 :RHITL 1qg0A 87 :RLYSI T0285 93 :NDGNSVKVVTI 1qg0A 100 :GDSKTVSLCVK T0285 104 :SAGRDEGPDRDIIWEMFLENLE 1qg0A 113 :VYTNDAGEVVKGVCSNFLCDLK Number of specific fragments extracted= 8 number of extra gaps= 0 total=87 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kz4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1kz4A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1kz4A/merged-good-all-a2m.gz for input Trying 1kz4A/merged-good-all-a2m Error: Couldn't open file 1kz4A/merged-good-all-a2m or 1kz4A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b2rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b2rA expands to /projects/compbio/data/pdb/1b2r.pdb.gz 1b2rA:# T0285 read from 1b2rA/merged-good-all-a2m # 1b2rA read from 1b2rA/merged-good-all-a2m # adding 1b2rA to template set # found chain 1b2rA in template set Warning: unaligning (T0285)K72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)H106 Warning: unaligning (T0285)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)H106 Warning: unaligning (T0285)P74 because of BadResidue code BAD_PEPTIDE in next template residue (1b2rA)E108 Warning: unaligning (T0285)Y75 because of BadResidue code BAD_PEPTIDE at template residue (1b2rA)E108 Warning: unaligning (T0285)N82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)E111 Warning: unaligning (T0285)R83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)E111 T0285 33 :RAMPNWSLRFVYIV 1b2rA 69 :KNGKPEKLRLYSIA T0285 47 :DRNNQDLLK 1b2rA 84 :TRHGDDVDD T0285 60 :PGIMVLAPRLTA 1b2rA 93 :KTISLCVRQLEY T0285 76 :D 1b2rA 109 :S T0285 84 :KLYG 1b2rA 112 :TVYG T0285 92 :LNDGNSVKVVTISAGRDEGPD 1b2rA 124 :IEPGSEVKITGPVGKEMLLPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=93 Number of alignments=19 # 1b2rA read from 1b2rA/merged-good-all-a2m # found chain 1b2rA in template set Warning: unaligning (T0285)K72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)H106 Warning: unaligning (T0285)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)H106 Warning: unaligning (T0285)P74 because of BadResidue code BAD_PEPTIDE in next template residue (1b2rA)E108 Warning: unaligning (T0285)Y75 because of BadResidue code BAD_PEPTIDE at template residue (1b2rA)E108 Warning: unaligning (T0285)N82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)E111 Warning: unaligning (T0285)R83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)E111 T0285 23 :R 1b2rA 69 :K T0285 34 :AMPNWSLRFVYIV 1b2rA 70 :NGKPEKLRLYSIA T0285 47 :DRNNQDLLKR 1b2rA 84 :TRHGDDVDDK T0285 61 :GIMVLAPRLTA 1b2rA 94 :TISLCVRQLEY T0285 81 :R 1b2rA 109 :S T0285 84 :KLYG 1b2rA 112 :TVYG T0285 92 :LNDGNSVKVVTISAGRDEGPD 1b2rA 124 :IEPGSEVKITGPVGKEMLLPD Number of specific fragments extracted= 7 number of extra gaps= 2 total=100 Number of alignments=20 # 1b2rA read from 1b2rA/merged-good-all-a2m # found chain 1b2rA in template set Warning: unaligning (T0285)K72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)H106 Warning: unaligning (T0285)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)H106 Warning: unaligning (T0285)P74 because of BadResidue code BAD_PEPTIDE in next template residue (1b2rA)E108 Warning: unaligning (T0285)Y75 because of BadResidue code BAD_PEPTIDE at template residue (1b2rA)E108 Warning: unaligning (T0285)N82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1b2rA)E111 Warning: unaligning (T0285)R83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1b2rA)E111 T0285 33 :RAMPNWSLRFVYIV 1b2rA 69 :KNGKPEKLRLYSIA T0285 47 :DRNNQDLLK 1b2rA 84 :TRHGDDVDD T0285 60 :PGIMVLAPRLTA 1b2rA 93 :KTISLCVRQLEY T0285 76 :D 1b2rA 109 :S T0285 84 :KLYG 1b2rA 112 :TVYG T0285 92 :LNDGNSVKVVTISAGRDEGPD 1b2rA 124 :IEPGSEVKITGPVGKEMLLPD Number of specific fragments extracted= 6 number of extra gaps= 2 total=106 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2lao/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/2lao/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/2lao/merged-good-all-a2m.gz for input Trying 2lao/merged-good-all-a2m Error: Couldn't open file 2lao/merged-good-all-a2m or 2lao/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1frqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1frqA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1frqA/merged-good-all-a2m.gz for input Trying 1frqA/merged-good-all-a2m Error: Couldn't open file 1frqA/merged-good-all-a2m or 1frqA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kz6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1kz6A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1kz6A/merged-good-all-a2m.gz for input Trying 1kz6A/merged-good-all-a2m Error: Couldn't open file 1kz6A/merged-good-all-a2m or 1kz6A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sm4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1sm4A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1sm4A/merged-good-all-a2m.gz for input Trying 1sm4A/merged-good-all-a2m Error: Couldn't open file 1sm4A/merged-good-all-a2m or 1sm4A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t8cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1t8cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1t8cA/merged-good-all-a2m.gz for input Trying 1t8cA/merged-good-all-a2m Error: Couldn't open file 1t8cA/merged-good-all-a2m or 1t8cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ivtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1ivtA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1ivtA/merged-good-all-a2m.gz for input Trying 1ivtA/merged-good-all-a2m Error: Couldn't open file 1ivtA/merged-good-all-a2m or 1ivtA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2etlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/2etlA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/2etlA/merged-good-all-a2m.gz for input Trying 2etlA/merged-good-all-a2m Error: Couldn't open file 2etlA/merged-good-all-a2m or 2etlA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qh0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qh0A expands to /projects/compbio/data/pdb/1qh0.pdb.gz 1qh0A:# T0285 read from 1qh0A/merged-good-all-a2m # 1qh0A read from 1qh0A/merged-good-all-a2m # adding 1qh0A to template set # found chain 1qh0A in template set Warning: unaligning (T0285)A105 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qh0A)K105 Warning: unaligning (T0285)G106 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)K105 Warning: unaligning (T0285)R107 because of BadResidue code BAD_PEPTIDE in next template residue (1qh0A)P107 Warning: unaligning (T0285)D108 because of BadResidue code BAD_PEPTIDE at template residue (1qh0A)P107 Warning: unaligning (T0285)E109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)E108 T0285 39 :SLRFVYIVDRNNQ 1qh0A 39 :IVQHIKFDLTGGN T0285 54 :LKRPLPPGIMVLAPRLTAKHPYDKVQD 1qh0A 52 :LKYIEGQSIGIIPPGVDKNGKPEKDRD T0285 81 :RNRKLYGRHITL 1qh0A 86 :HGDDVDDKTISL T0285 100 :VVT 1qh0A 98 :CVR T0285 103 :IS 1qh0A 102 :LE T0285 110 :GPDR 1qh0A 109 :SGET T0285 116 :IWEMFLENLE 1qh0A 116 :VCSTYLTHIE Number of specific fragments extracted= 7 number of extra gaps= 1 total=113 Number of alignments=22 # 1qh0A read from 1qh0A/merged-good-all-a2m # found chain 1qh0A in template set Warning: unaligning (T0285)A105 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qh0A)K105 Warning: unaligning (T0285)G106 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)K105 Warning: unaligning (T0285)R107 because of BadResidue code BAD_PEPTIDE in next template residue (1qh0A)P107 Warning: unaligning (T0285)D108 because of BadResidue code BAD_PEPTIDE at template residue (1qh0A)P107 Warning: unaligning (T0285)E109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)E108 T0285 57 :PLPPG 1qh0A 53 :KYIEG T0285 62 :IMVLAPRLTAKHPYDKVQD 1qh0A 60 :IGIIPPGVDKNGKPEKDRD T0285 81 :RNRKLYGRHITL 1qh0A 86 :HGDDVDDKTISL T0285 100 :VVTI 1qh0A 98 :CVRQ T0285 104 :S 1qh0A 103 :E T0285 110 :GPDR 1qh0A 109 :SGET T0285 114 :D 1qh0A 115 :G T0285 116 :IWEMFLENLE 1qh0A 116 :VCSTYLTHIE Number of specific fragments extracted= 8 number of extra gaps= 1 total=121 Number of alignments=23 # 1qh0A read from 1qh0A/merged-good-all-a2m # found chain 1qh0A in template set Warning: unaligning (T0285)A105 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qh0A)K105 Warning: unaligning (T0285)G106 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)K105 Warning: unaligning (T0285)R107 because of BadResidue code BAD_PEPTIDE in next template residue (1qh0A)P107 Warning: unaligning (T0285)D108 because of BadResidue code BAD_PEPTIDE at template residue (1qh0A)P107 Warning: unaligning (T0285)E109 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qh0A)E108 T0285 39 :SLRFVYIVDRNNQ 1qh0A 39 :IVQHIKFDLTGGN T0285 54 :LKRPLPPGIMVLAPRLTAKHPYDKVQD 1qh0A 52 :LKYIEGQSIGIIPPGVDKNGKPEKDRD T0285 81 :RNRKLYGRHITL 1qh0A 86 :HGDDVDDKTISL T0285 100 :VVT 1qh0A 98 :CVR T0285 103 :IS 1qh0A 102 :LE T0285 110 :GPDR 1qh0A 109 :SGET T0285 116 :IWEMFLENLE 1qh0A 116 :VCSTYLTHIE Number of specific fragments extracted= 7 number of extra gaps= 1 total=128 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kyyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1kyyA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1kyyA/merged-good-all-a2m.gz for input Trying 1kyyA/merged-good-all-a2m Error: Couldn't open file 1kyyA/merged-good-all-a2m or 1kyyA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wuzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1wuzA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1wuzA/merged-good-all-a2m.gz for input Trying 1wuzA/merged-good-all-a2m Error: Couldn't open file 1wuzA/merged-good-all-a2m or 1wuzA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gawA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285/1gawA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0285/1gawA/merged-good-all-a2m.gz for input Trying 1gawA/merged-good-all-a2m Error: Couldn't open file 1gawA/merged-good-all-a2m or 1gawA/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0285//projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0285/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)V101.CB) [> 3.8620 = 6.4366 < 8.3676] w=1.0000 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)V100.CB) [> 3.4734 = 5.7891 < 7.5258] w=1.0000 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)R56.CB) [> 3.7128 = 6.1880 < 8.0444] w=0.8999 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V101.CB) [> 4.1720 = 6.9534 < 9.0394] w=0.8643 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)R113.CB) [> 3.9385 = 6.5642 < 8.5334] w=0.7475 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)V101.CB) [> 3.1813 = 5.3022 < 6.8928] w=0.7228 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)V100.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.7228 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)T102.CB) [> 3.3122 = 5.5203 < 7.1764] w=0.7228 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)T102.CB) [> 4.3416 = 7.2360 < 9.4068] w=0.7228 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)T102.CB) [> 3.9337 = 6.5562 < 8.5230] w=0.6885 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L58.CB) [> 3.3484 = 5.5807 < 7.2550] w=0.6670 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)F120.CB) [> 4.4430 = 7.4051 < 9.6266] w=0.6515 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)I116.CB) [> 3.1247 = 5.2079 < 6.7702] w=0.6515 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)F120.CB) [> 3.0718 = 5.1196 < 6.6555] w=0.6515 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)V98.CB) [> 3.6772 = 6.1286 < 7.9672] w=0.6437 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)I103.CB) [> 2.8808 = 4.8014 < 6.2418] w=0.6437 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)I103.CB) [> 4.3082 = 7.1803 < 9.3344] w=0.6437 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)L92.CB) [> 4.0607 = 6.7678 < 8.7981] w=0.6182 to align # Constraint # added constraint: constraint((T0285)L92.CB, (T0285)V101.CB) [> 4.0698 = 6.7831 < 8.8180] w=0.5859 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)D114.CB) [> 3.4317 = 5.7196 < 7.4354] w=0.5724 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)R88.CB) [> 3.2719 = 5.4532 < 7.0891] w=0.5328 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)I90.CB) [> 3.7803 = 6.3005 < 8.1906] w=0.5328 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)V100.CB) [> 4.7606 = 7.9344 < 10.3147] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)L85.CB) [> 3.3331 = 5.5552 < 7.2218] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)R88.CB) [> 4.6822 = 7.8036 < 10.1447] w=0.5328 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)I116.CB) [> 3.9879 = 6.6465 < 8.6404] w=0.5328 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)W117.CB) [> 3.1601 = 5.2669 < 6.8469] w=0.5328 to align # Constraint # added constraint: constraint((T0285)T91.CB, (T0285)V101.CB) [> 4.0328 = 6.7214 < 8.7378] w=0.5328 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V100.CB) [> 3.8270 = 6.3782 < 8.2917] w=0.5118 to align # Constraint # added constraint: constraint((T0285)G61.CA, (T0285)T91.CB) [> 4.3284 = 7.2140 < 9.3781] w=0.4994 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)V100.CB) [> 4.6124 = 7.6873 < 9.9935] w=0.4967 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)I90.CB) [> 3.8534 = 6.4224 < 8.3491] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)W117.CB) [> 3.5815 = 5.9691 < 7.7599] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)L121.CB) [> 3.8671 = 6.4452 < 8.3787] w=0.4739 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)W117.CB) [> 2.6240 = 4.3734 < 5.6854] w=0.4739 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)F120.CB) [> 3.7639 = 6.2731 < 8.1551] w=0.4739 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)I116.CB) [> 4.0924 = 6.8207 < 8.8669] w=0.4739 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)E118.CB) [> 3.3270 = 5.5450 < 7.2084] w=0.4739 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L58.CB) [> 4.3119 = 7.1866 < 9.3425] w=0.4672 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)P57.CB) [> 3.7264 = 6.2106 < 8.0737] w=0.4672 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)R56.CB) [> 4.1229 = 6.8716 < 8.9330] w=0.4672 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)V43.CB) [> 3.3265 = 5.5441 < 7.2074] w=0.4672 to align # Constraint # added constraint: constraint((T0285)R33.CB, (T0285)V100.CB) [> 4.2561 = 7.0935 < 9.2215] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)K99.CB) [> 4.4986 = 7.4977 < 9.7470] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)H89.CB) [> 3.5429 = 5.9048 < 7.6762] w=0.4672 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)P57.CB) [> 4.7199 = 7.8665 < 10.2265] w=0.4672 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)I62.CB) [> 4.3099 = 7.1832 < 9.3382] w=0.4672 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)L54.CB) [> 4.5238 = 7.5396 < 9.8015] w=0.4672 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)L92.CB) [> 4.7998 = 7.9997 < 10.3997] w=0.4672 to align # Constraint # added constraint: constraint((T0285)H89.CB, (T0285)V100.CB) [> 3.3926 = 5.6544 < 7.3507] w=0.4672 to align # Constraint # added constraint: constraint((T0285)H89.CB, (T0285)V101.CB) [> 4.6421 = 7.7369 < 10.0579] w=0.4672 to align # Constraint # added constraint: constraint((T0285)L69.CB, (T0285)T102.CB) [> 4.4012 = 7.3353 < 9.5359] w=0.4447 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)I103.CB) [> 4.0420 = 6.7367 < 8.7577] w=0.4447 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)V100.CB) [> 3.5077 = 5.8461 < 7.6000] w=0.4344 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)G61.CA) [> 4.6026 = 7.6710 < 9.9723] w=0.4327 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)L58.CB) [> 3.0273 = 5.0455 < 6.5591] w=0.4327 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)G61.CA) [> 4.5875 = 7.6459 < 9.9396] w=0.4327 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)L53.CB) [> 3.3060 = 5.5100 < 7.1630] w=0.4327 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)L54.CB) [> 4.2335 = 7.0558 < 9.1725] w=0.4327 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)L85.CB) [> 3.5144 = 5.8574 < 7.6146] w=0.4218 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)V78.CB) [> 3.7087 = 6.1811 < 8.0354] w=0.4072 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)V78.CB) [> 3.6807 = 6.1344 < 7.9748] w=0.4072 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V100.CB) [> 4.7389 = 7.8982 < 10.2677] w=0.3906 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)S97.CB) [> 3.5203 = 5.8672 < 7.6273] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)N96.CB) [> 3.9506 = 6.5843 < 8.5596] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)V100.CB) [> 4.4337 = 7.3896 < 9.6064] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)K99.CB) [> 4.1368 = 6.8947 < 8.9631] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)V98.CB) [> 2.7073 = 4.5122 < 5.8659] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)S97.CB) [> 3.6221 = 6.0367 < 7.8478] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V98.CB) [> 4.4744 = 7.4574 < 9.6946] w=0.3552 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)S97.CB) [> 3.0629 = 5.1048 < 6.6362] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)L124.CB) [> 3.8111 = 6.3519 < 8.2575] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)L121.CB) [> 4.0169 = 6.6948 < 8.7033] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)T102.CB) [> 4.3761 = 7.2935 < 9.4816] w=0.3552 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)K99.CB) [> 3.9986 = 6.6644 < 8.6637] w=0.3552 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)K99.CB) [> 3.9027 = 6.5045 < 8.4558] w=0.3552 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)L121.CB) [> 4.2290 = 7.0483 < 9.1627] w=0.3552 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)V101.CB) [> 3.9328 = 6.5547 < 8.5212] w=0.3552 to align # Constraint # added constraint: constraint((T0285)S104.CB, (T0285)I115.CB) [> 4.2558 = 7.0930 < 9.2210] w=0.3552 to align # Constraint # added constraint: constraint((T0285)I90.CB, (T0285)L121.CB) [> 4.6676 = 7.7793 < 10.1131] w=0.3552 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Y75.CB) [> 4.4138 = 7.3564 < 9.5633] w=0.3552 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)I90.CB) [> 4.5712 = 7.6187 < 9.9043] w=0.3552 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)R88.CB) [> 3.9713 = 6.6189 < 8.6046] w=0.3552 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)S97.CB) [> 3.8637 = 6.4394 < 8.3713] w=0.3552 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)V78.CB) [> 3.4988 = 5.8314 < 7.5808] w=0.3551 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)V64.CB) [> 3.9943 = 6.6571 < 8.6543] w=0.3417 to align # Constraint # added constraint: constraint((T0285)R48.CB, (T0285)A71.CB) [> 3.3759 = 5.6265 < 7.3145] w=0.3115 to align # Constraint # added constraint: constraint((T0285)R48.CB, (T0285)T70.CB) [> 4.5641 = 7.6068 < 9.8888] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)A71.CB) [> 2.8552 = 4.7586 < 6.1862] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)T70.CB) [> 4.0696 = 6.7826 < 8.8174] w=0.3115 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)L69.CB) [> 3.2961 = 5.4935 < 7.1416] w=0.3115 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)L69.CB) [> 4.1188 = 6.8646 < 8.9240] w=0.3115 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L69.CB) [> 3.9436 = 6.5726 < 8.5444] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)V98.CB) [> 2.2424 = 3.7373 < 4.8585] w=0.3115 to align # Constraint # added constraint: constraint((T0285)D31.CB, (T0285)V98.CB) [> 4.0127 = 6.6878 < 8.6941] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L28.CB, (T0285)V98.CB) [> 3.4553 = 5.7588 < 7.4864] w=0.3115 to align # Constraint # added constraint: constraint((T0285)G87.CA, (T0285)V101.CB) [> 3.8899 = 6.4832 < 8.4282] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)A105.CB) [> 4.7663 = 7.9439 < 10.3271] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L85.CB, (T0285)T102.CB) [> 3.3676 = 5.6127 < 7.2966] w=0.3115 to align # Constraint # added constraint: constraint((T0285)L54.CB, (T0285)A71.CB) [> 4.6378 = 7.7298 < 10.0487] w=0.3115 to align # Constraint # added constraint: constraint((T0285)D47.CB, (T0285)V101.CB) [> 4.7265 = 7.8776 < 10.2408] w=0.2885 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)K99.CB) [> 4.2994 = 7.1658 < 9.3155] w=0.2885 to align # Constraint # added constraint: constraint((T0285)R41.CB, (T0285)I103.CB) [> 3.6179 = 6.0298 < 7.8388] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)I103.CB) [> 4.2088 = 7.0146 < 9.1190] w=0.2885 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)A105.CB) [> 3.4956 = 5.8260 < 7.5738] w=0.2885 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)T102.CB) [> 4.1038 = 6.8396 < 8.8915] w=0.2885 to align # Constraint # added constraint: constraint((T0285)P36.CB, (T0285)A105.CB) [> 4.1201 = 6.8669 < 8.9269] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L69.CB, (T0285)T91.CB) [> 4.6875 = 7.8124 < 10.1562] w=0.2885 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)V78.CB) [> 3.6002 = 6.0004 < 7.8005] w=0.2885 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)R81.CB) [> 3.4948 = 5.8247 < 7.5721] w=0.2885 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)K77.CB) [> 4.1218 = 6.8697 < 8.9306] w=0.2885 to align # Constraint # added constraint: constraint((T0285)I62.CB, (T0285)K77.CB) [> 3.9483 = 6.5805 < 8.5547] w=0.2885 to align # Constraint # added constraint: constraint((T0285)L54.CB, (T0285)N93.CB) [> 3.8300 = 6.3833 < 8.2982] w=0.2885 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)W117.CB) [> 3.8779 = 6.4632 < 8.4021] w=0.2736 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)I62.CB) [> 3.7594 = 6.2656 < 8.1453] w=0.2531 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)P60.CB) [> 4.7777 = 7.9629 < 10.3518] w=0.1998 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)P60.CB) [> 3.7040 = 6.1734 < 8.0254] w=0.1998 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)Y86.CB) [> 2.9680 = 4.9467 < 6.4307] w=0.1998 to align # Constraint # added constraint: constraint((T0285)V64.CB, (T0285)M119.CB) [> 4.6949 = 7.8249 < 10.1723] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Y86.CB) [> 3.6420 = 6.0700 < 7.8910] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)G87.CA) [> 3.5528 = 5.9213 < 7.6977] w=0.1776 to align # Constraint # added constraint: constraint((T0285)A66.CB, (T0285)I115.CB) [> 3.3194 = 5.5324 < 7.1921] w=0.1776 to align # Constraint # added constraint: constraint((T0285)P67.CB, (T0285)M119.CB) [> 3.5685 = 5.9475 < 7.7317] w=0.1776 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)F120.CB) [> 2.8170 = 4.6951 < 6.1036] w=0.1776 to align # Constraint # added constraint: constraint((T0285)T102.CB, (T0285)W117.CB) [> 3.1433 = 5.2389 < 6.8105] w=0.1776 to align # Constraint # added constraint: constraint((T0285)R88.CB, (T0285)I115.CB) [> 4.7909 = 7.9848 < 10.3802] w=0.1776 to align # Constraint # added constraint: constraint((T0285)Y86.CB, (T0285)I116.CB) [> 4.2059 = 7.0098 < 9.1127] w=0.1776 to align # Constraint # added constraint: constraint((T0285)Y86.CB, (T0285)I115.CB) [> 3.5454 = 5.9089 < 7.6816] w=0.1776 to align # Constraint # added constraint: constraint((T0285)R68.CB, (T0285)I115.CB) [> 4.1761 = 6.9602 < 9.0482] w=0.1776 to align # Constraint # added constraint: constraint((T0285)L28.CB, (T0285)V100.CB) [> 3.4553 = 5.7588 < 7.4864] w=0.1557 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)V101.CB) [> 4.3414 = 7.2357 < 9.4064] w=0.1557 to align # Constraint # added constraint: constraint((T0285)A34.CB, (T0285)T102.CB) [> 4.6772 = 7.7954 < 10.1340] w=0.1557 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)T102.CB) [> 4.7874 = 7.9790 < 10.3727] w=0.1557 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)T102.CB) [> 3.5318 = 5.8863 < 7.6522] w=0.1557 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)I62.CB) [> 4.6127 = 7.6878 < 9.9941] w=0.1442 to align # Constraint # added constraint: constraint((T0285)M35.CB, (T0285)I62.CB) [> 2.9240 = 4.8734 < 6.3354] w=0.1442 to align # Constraint # added constraint: constraint((T0285)V98.CB, (T0285)R113.CB) [> 3.7757 = 6.2929 < 8.1807] w=0.1442 to align # Constraint # added constraint: constraint((T0285)V46.CB, (T0285)M63.CB) [> 2.9104 = 4.8506 < 6.3058] w=0.1415 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)I103.CB) [> 4.3715 = 7.2858 < 9.4715] w=0.1415 to align # Constraint # added constraint: constraint((T0285)I45.CB, (T0285)M63.CB) [> 4.3906 = 7.3176 < 9.5129] w=0.1415 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)L65.CB) [> 4.4428 = 7.4046 < 9.6260] w=0.1415 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L65.CB) [> 4.5820 = 7.6366 < 9.9276] w=0.1415 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)S104.CB) [> 3.8504 = 6.4173 < 8.3425] w=0.1415 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)K99.CB) [> 4.7594 = 7.9323 < 10.3120] w=0.1415 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)I90.CB) [> 3.0560 = 5.0934 < 6.6214] w=0.1332 to align # Constraint # added constraint: constraint((T0285)L40.CB, (T0285)L92.CB) [> 4.3116 = 7.1860 < 9.3418] w=0.1332 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)R88.CB) [> 2.7617 = 4.6029 < 5.9838] w=0.1332 to align # Constraint # added constraint: constraint((T0285)F42.CB, (T0285)H89.CB) [> 4.7044 = 7.8407 < 10.1928] w=0.1332 to align # Constraint # added constraint: constraint((T0285)W38.CB, (T0285)L92.CB) [> 3.4148 = 5.6914 < 7.3988] w=0.1332 to align # Constraint # added constraint: constraint((T0285)P36.CB, (T0285)N93.CB) [> 4.4851 = 7.4752 < 9.7178] w=0.1332 to align # Constraint # added constraint: constraint((T0285)Y75.CB, (T0285)V101.CB) [> 4.3352 = 7.2253 < 9.3928] w=0.1332 to align # Constraint # added constraint: constraint((T0285)Y75.CB, (T0285)K99.CB) [> 1.9486 = 3.2477 < 4.2220] w=0.1332 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)I103.CB) [> 3.6295 = 6.0492 < 7.8640] w=0.1332 to align # Constraint # added constraint: constraint((T0285)M63.CB, (T0285)G106.CA) [> 3.6200 = 6.0334 < 7.8434] w=0.1332 to align # Constraint # added constraint: constraint((T0285)L65.CB, (T0285)Q79.CB) [> 4.5912 = 7.6520 < 9.9476] w=0.1187 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)M119.CB) [> 4.1170 = 6.8616 < 8.9201] w=0.1187 to align # Constraint # added constraint: constraint((T0285)I103.CB, (T0285)R113.CB) [> 3.3207 = 5.5346 < 7.1949] w=0.0960 to align # Constraint # added constraint: constraint((T0285)R107.CB, (T0285)I116.CB) [> 4.5679 = 7.6132 < 9.8971] w=0.0960 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)I90.CB) [> 4.4811 = 7.4685 < 9.7090] w=0.0792 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)H89.CB) [> 3.2972 = 5.4953 < 7.1439] w=0.0792 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)L124.CB) [> 4.1750 = 6.9583 < 9.0458] w=0.0792 to align # Constraint # added constraint: constraint((T0285)V43.CB, (T0285)V101.CB) [> 3.5721 = 5.9535 < 7.7395] w=0.0792 to align # Constraint # added constraint: constraint((T0285)S39.CB, (T0285)P67.CB) [> 4.7863 = 7.9771 < 10.3703] w=0.0533 to align # Constraint # added constraint: constraint((T0285)N37.CB, (T0285)P67.CB) [> 3.9042 = 6.5069 < 8.4590] w=0.0533 to align # Constraint # added constraint: constraint((T0285)L32.CB, (T0285)L65.CB) [> 4.0469 = 6.7448 < 8.7682] w=0.0533 to align # Constraint # added constraint: constraint((T0285)Y44.CB, (T0285)G61.CA) [> 3.3777 = 5.6295 < 7.3184] w=0.0533 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0285/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0285/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 134, because occupancy 1 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 139, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 141, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 143, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 145, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 147, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_FLEX_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_FLEX_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0285)L3.O and (T0285)P4.N only 0.000 apart, marking (T0285)P4.N as missing # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0285 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 2.3393 model score 1.8581 model score 1.5944 model score 1.6282 model score 2.4324 model score 1.5421 model score 1.4571 model score 1.4571 model score 1.4292 model score 1.2854 model score 1.6272 model score 1.8946 model score 1.7701 model score 1.6163 model score 1.8009 model score 1.5513 model score 2.0302 model score 1.7394 model score 1.9289 model score 2.2514 model score 1.3329 model score 1.1909 model score 1.2526 model score 1.1508 model score 1.4285 model score 1.6887 model score 1.0487 model score 1.3446 model score 1.1083 model score 1.2926 model score 1.5114 model score 1.5555 model score 1.5327 model score 1.4760 model score 1.5782 model score 1.5588 model score 2.2522 model score 2.7790 model score 1.4559 model score 2.0198 model score 1.7925 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3434 model score 1.5591 model score 1.3730 model score 1.7313 model score 1.4413 model score 1.8146 model score 1.6748 model score 1.7834 model score 1.8770 model score 1.2651 model score 1.8531 model score 1.7795 model score 1.6647 model score 2.0944 model score 1.9129 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2738 model score 1.2435 model score 1.2278 model score 1.7206 model score 1.5586 model score 1.4747 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8146 model score 1.6748 model score 1.7834 model score 1.8770 model score 1.2651 model score 2.0404 model score 1.7050 model score 1.2197 model score 1.8364 model score 3.0157 model score 3.3774 model score 3.3774 model score 2.9909 model score 1.4757 model score 1.2377 model score 1.4424 model score 1.3914 model score 1.9898 model score 1.4903 model score 1.2564 model score 1.5156 model score 1.4802 model score 1.2892 model score 1.2771 model score 1.4138 model score 1.4608 model score 1.6833 model score 1.3029 model score 1.6653 model score 1.4969 model score 1.5435 model score 1.5131 model score 1.5622 model score 1.5152 model score 1.5270 model score 1.1744 model score 1.5368 model score 1.9559 model score 1.6417 model score 1.7426 model score 1.6134 model score 1.6783 model score 1.6509 model score 1.6030 model score 1.6656 model score 1.6879 model score 1.7699 model score 1.8080 model score 1.6797 model score 1.6438 model score 1.6901 model score 1.6851 model score 1.7597 model score 1.7967 model score 1.6225 model score 1.2771 model score 1.4950 model score 1.5332 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6879 model score 1.6125 model score 1.6225 model score 1.6901 model score 1.7866 model score 1.6115 model score 1.3975 model score 1.7810 model score 1.1767 model score 1.4555 model score 0.9910 model score 1.4367 model score 1.4283 model score 1.5001 model score 1.4392 model score 1.3995 model score 0.9236 model score 1.1548 model score 1.3796 model score 1.4779 model score 1.3622 model score 1.0607 model score 1.3774 model score 1.4715 model score 1.1410 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3693 model score 1.5121 model score 1.8858 model score 1.6967 model score 1.4450 model score 1.5270 model score 1.7810 model score 1.7560 model score 1.9563 model score 1.6115 model score 1.7773 model score 1.7107 model score 1.7189 model score 1.6145 model score 1.9270 model score 1.7446 model score 1.6714 model score 1.4944 model score 1.4810 model score 1.8201 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4056 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7612 model score 1.0742 model score 1.1096 model score 0.8530 model score 1.0064 model score 1.1232 model score 1.0452 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1202 model score 1.4169 model score 1.6212 model score 1.5983 model score 2.3596 model score 1.7188 model score 1.4108 model score 1.4762 model score 1.0038 model score 1.4085 model score 1.5315 model score 1.5843 model score 1.6426 model score 1.5290 model score 1.5736 model score 1.5762 model score 1.4598 model score 1.4598 model score 1.5803 model score 1.4085 model score 1.0788 model score 1.4670 model score 1.1963 USE_META, weight: 0.4571 cost: 2.3393 min: 0.7612 max: 3.3774 USE_META, weight: 0.6226 cost: 1.8581 min: 0.7612 max: 3.3774 USE_META, weight: 0.7134 cost: 1.5944 min: 0.7612 max: 3.3774 USE_META, weight: 0.7017 cost: 1.6282 min: 0.7612 max: 3.3774 USE_META, weight: 0.4251 cost: 2.4324 min: 0.7612 max: 3.3774 USE_META, weight: 0.7314 cost: 1.5421 min: 0.7612 max: 3.3774 USE_META, weight: 0.7606 cost: 1.4571 min: 0.7612 max: 3.3774 USE_META, weight: 0.7606 cost: 1.4571 min: 0.7612 max: 3.3774 USE_META, weight: 0.7702 cost: 1.4292 min: 0.7612 max: 3.3774 USE_META, weight: 0.8197 cost: 1.2854 min: 0.7612 max: 3.3774 USE_META, weight: 0.7021 cost: 1.6272 min: 0.7612 max: 3.3774 USE_META, weight: 0.6101 cost: 1.8946 min: 0.7612 max: 3.3774 USE_META, weight: 0.6529 cost: 1.7701 min: 0.7612 max: 3.3774 USE_META, weight: 0.7058 cost: 1.6163 min: 0.7612 max: 3.3774 USE_META, weight: 0.6423 cost: 1.8009 min: 0.7612 max: 3.3774 USE_META, weight: 0.7282 cost: 1.5513 min: 0.7612 max: 3.3774 USE_META, weight: 0.5635 cost: 2.0302 min: 0.7612 max: 3.3774 USE_META, weight: 0.6635 cost: 1.7394 min: 0.7612 max: 3.3774 USE_META, weight: 0.5983 cost: 1.9289 min: 0.7612 max: 3.3774 USE_META, weight: 0.4874 cost: 2.2514 min: 0.7612 max: 3.3774 USE_META, weight: 0.8033 cost: 1.3329 min: 0.7612 max: 3.3774 USE_META, weight: 0.8522 cost: 1.1909 min: 0.7612 max: 3.3774 USE_META, weight: 0.8310 cost: 1.2526 min: 0.7612 max: 3.3774 USE_META, weight: 0.8660 cost: 1.1508 min: 0.7612 max: 3.3774 USE_META, weight: 0.7705 cost: 1.4285 min: 0.7612 max: 3.3774 USE_META, weight: 0.6809 cost: 1.6887 min: 0.7612 max: 3.3774 USE_META, weight: 0.9011 cost: 1.0487 min: 0.7612 max: 3.3774 USE_META, weight: 0.7993 cost: 1.3446 min: 0.7612 max: 3.3774 USE_META, weight: 0.8806 cost: 1.1083 min: 0.7612 max: 3.3774 USE_META, weight: 0.8172 cost: 1.2926 min: 0.7612 max: 3.3774 USE_META, weight: 0.7419 cost: 1.5114 min: 0.7612 max: 3.3774 USE_META, weight: 0.7268 cost: 1.5555 min: 0.7612 max: 3.3774 USE_META, weight: 0.7346 cost: 1.5327 min: 0.7612 max: 3.3774 USE_META, weight: 0.7541 cost: 1.4760 min: 0.7612 max: 3.3774 USE_META, weight: 0.7189 cost: 1.5782 min: 0.7612 max: 3.3774 USE_META, weight: 0.7256 cost: 1.5588 min: 0.7612 max: 3.3774 USE_META, weight: 0.4871 cost: 2.2522 min: 0.7612 max: 3.3774 USE_META, weight: 0.3058 cost: 2.7790 min: 0.7612 max: 3.3774 USE_META, weight: 0.7610 cost: 1.4559 min: 0.7612 max: 3.3774 USE_META, weight: 0.5670 cost: 2.0198 min: 0.7612 max: 3.3774 USE_META, weight: 0.6452 cost: 1.7925 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.7997 cost: 1.3434 min: 0.7612 max: 3.3774 USE_META, weight: 0.7255 cost: 1.5591 min: 0.7612 max: 3.3774 USE_META, weight: 0.7895 cost: 1.3730 min: 0.7612 max: 3.3774 USE_META, weight: 0.6663 cost: 1.7313 min: 0.7612 max: 3.3774 USE_META, weight: 0.7660 cost: 1.4413 min: 0.7612 max: 3.3774 USE_META, weight: 0.6376 cost: 1.8146 min: 0.7612 max: 3.3774 USE_META, weight: 0.6857 cost: 1.6748 min: 0.7612 max: 3.3774 USE_META, weight: 0.6483 cost: 1.7834 min: 0.7612 max: 3.3774 USE_META, weight: 0.6161 cost: 1.8770 min: 0.7612 max: 3.3774 USE_META, weight: 0.8267 cost: 1.2651 min: 0.7612 max: 3.3774 USE_META, weight: 0.6244 cost: 1.8531 min: 0.7612 max: 3.3774 USE_META, weight: 0.6497 cost: 1.7795 min: 0.7612 max: 3.3774 USE_META, weight: 0.6892 cost: 1.6647 min: 0.7612 max: 3.3774 USE_META, weight: 0.5414 cost: 2.0944 min: 0.7612 max: 3.3774 USE_META, weight: 0.6038 cost: 1.9129 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.4797 cost: 2.2738 min: 0.7612 max: 3.3774 USE_META, weight: 0.8341 cost: 1.2435 min: 0.7612 max: 3.3774 USE_META, weight: 0.8395 cost: 1.2278 min: 0.7612 max: 3.3774 USE_META, weight: 0.6700 cost: 1.7206 min: 0.7612 max: 3.3774 USE_META, weight: 0.7257 cost: 1.5586 min: 0.7612 max: 3.3774 USE_META, weight: 0.7546 cost: 1.4747 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.6376 cost: 1.8146 min: 0.7612 max: 3.3774 USE_META, weight: 0.6857 cost: 1.6748 min: 0.7612 max: 3.3774 USE_META, weight: 0.6483 cost: 1.7834 min: 0.7612 max: 3.3774 USE_META, weight: 0.6161 cost: 1.8770 min: 0.7612 max: 3.3774 USE_META, weight: 0.8267 cost: 1.2651 min: 0.7612 max: 3.3774 USE_META, weight: 0.5599 cost: 2.0404 min: 0.7612 max: 3.3774 USE_META, weight: 0.6753 cost: 1.7050 min: 0.7612 max: 3.3774 USE_META, weight: 0.8423 cost: 1.2197 min: 0.7612 max: 3.3774 USE_META, weight: 0.6301 cost: 1.8364 min: 0.7612 max: 3.3774 USE_META, weight: 0.2244 cost: 3.0157 min: 0.7612 max: 3.3774 USE_META, weight: 0.1000 cost: 3.3774 min: 0.7612 max: 3.3774 USE_META, weight: 0.1000 cost: 3.3774 min: 0.7612 max: 3.3774 USE_META, weight: 0.2330 cost: 2.9909 min: 0.7612 max: 3.3774 USE_META, weight: 0.7542 cost: 1.4757 min: 0.7612 max: 3.3774 USE_META, weight: 0.8361 cost: 1.2377 min: 0.7612 max: 3.3774 USE_META, weight: 0.7657 cost: 1.4424 min: 0.7612 max: 3.3774 USE_META, weight: 0.7832 cost: 1.3914 min: 0.7612 max: 3.3774 USE_META, weight: 0.5773 cost: 1.9898 min: 0.7612 max: 3.3774 USE_META, weight: 0.7492 cost: 1.4903 min: 0.7612 max: 3.3774 USE_META, weight: 0.8296 cost: 1.2564 min: 0.7612 max: 3.3774 USE_META, weight: 0.7405 cost: 1.5156 min: 0.7612 max: 3.3774 USE_META, weight: 0.7527 cost: 1.4802 min: 0.7612 max: 3.3774 USE_META, weight: 0.8184 cost: 1.2892 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.7755 cost: 1.4138 min: 0.7612 max: 3.3774 USE_META, weight: 0.7593 cost: 1.4608 min: 0.7612 max: 3.3774 USE_META, weight: 0.6828 cost: 1.6833 min: 0.7612 max: 3.3774 USE_META, weight: 0.8136 cost: 1.3029 min: 0.7612 max: 3.3774 USE_META, weight: 0.6890 cost: 1.6653 min: 0.7612 max: 3.3774 USE_META, weight: 0.7469 cost: 1.4969 min: 0.7612 max: 3.3774 USE_META, weight: 0.7309 cost: 1.5435 min: 0.7612 max: 3.3774 USE_META, weight: 0.7413 cost: 1.5131 min: 0.7612 max: 3.3774 USE_META, weight: 0.7245 cost: 1.5622 min: 0.7612 max: 3.3774 USE_META, weight: 0.7406 cost: 1.5152 min: 0.7612 max: 3.3774 USE_META, weight: 0.7366 cost: 1.5270 min: 0.7612 max: 3.3774 USE_META, weight: 0.8579 cost: 1.1744 min: 0.7612 max: 3.3774 USE_META, weight: 0.7332 cost: 1.5368 min: 0.7612 max: 3.3774 USE_META, weight: 0.5890 cost: 1.9559 min: 0.7612 max: 3.3774 USE_META, weight: 0.6971 cost: 1.6417 min: 0.7612 max: 3.3774 USE_META, weight: 0.6624 cost: 1.7426 min: 0.7612 max: 3.3774 USE_META, weight: 0.7068 cost: 1.6134 min: 0.7612 max: 3.3774 USE_META, weight: 0.6845 cost: 1.6783 min: 0.7612 max: 3.3774 USE_META, weight: 0.6939 cost: 1.6509 min: 0.7612 max: 3.3774 USE_META, weight: 0.7104 cost: 1.6030 min: 0.7612 max: 3.3774 USE_META, weight: 0.6889 cost: 1.6656 min: 0.7612 max: 3.3774 USE_META, weight: 0.6812 cost: 1.6879 min: 0.7612 max: 3.3774 USE_META, weight: 0.6530 cost: 1.7699 min: 0.7612 max: 3.3774 USE_META, weight: 0.6399 cost: 1.8080 min: 0.7612 max: 3.3774 USE_META, weight: 0.6840 cost: 1.6797 min: 0.7612 max: 3.3774 USE_META, weight: 0.6964 cost: 1.6438 min: 0.7612 max: 3.3774 USE_META, weight: 0.6805 cost: 1.6901 min: 0.7612 max: 3.3774 USE_META, weight: 0.6822 cost: 1.6851 min: 0.7612 max: 3.3774 USE_META, weight: 0.6565 cost: 1.7597 min: 0.7612 max: 3.3774 USE_META, weight: 0.6438 cost: 1.7967 min: 0.7612 max: 3.3774 USE_META, weight: 0.7037 cost: 1.6225 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.7476 cost: 1.4950 min: 0.7612 max: 3.3774 USE_META, weight: 0.7344 cost: 1.5332 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.6812 cost: 1.6879 min: 0.7612 max: 3.3774 USE_META, weight: 0.7071 cost: 1.6125 min: 0.7612 max: 3.3774 USE_META, weight: 0.7037 cost: 1.6225 min: 0.7612 max: 3.3774 USE_META, weight: 0.6805 cost: 1.6901 min: 0.7612 max: 3.3774 USE_META, weight: 0.6473 cost: 1.7866 min: 0.7612 max: 3.3774 USE_META, weight: 0.7075 cost: 1.6115 min: 0.7612 max: 3.3774 USE_META, weight: 0.7811 cost: 1.3975 min: 0.7612 max: 3.3774 USE_META, weight: 0.6492 cost: 1.7810 min: 0.7612 max: 3.3774 USE_META, weight: 0.8571 cost: 1.1767 min: 0.7612 max: 3.3774 USE_META, weight: 0.7612 cost: 1.4555 min: 0.7612 max: 3.3774 USE_META, weight: 0.9209 cost: 0.9910 min: 0.7612 max: 3.3774 USE_META, weight: 0.7676 cost: 1.4367 min: 0.7612 max: 3.3774 USE_META, weight: 0.7705 cost: 1.4283 min: 0.7612 max: 3.3774 USE_META, weight: 0.7458 cost: 1.5001 min: 0.7612 max: 3.3774 USE_META, weight: 0.7668 cost: 1.4392 min: 0.7612 max: 3.3774 USE_META, weight: 0.7804 cost: 1.3995 min: 0.7612 max: 3.3774 USE_META, weight: 0.9441 cost: 0.9236 min: 0.7612 max: 3.3774 USE_META, weight: 0.8646 cost: 1.1548 min: 0.7612 max: 3.3774 USE_META, weight: 0.7873 cost: 1.3796 min: 0.7612 max: 3.3774 USE_META, weight: 0.7534 cost: 1.4779 min: 0.7612 max: 3.3774 USE_META, weight: 0.7933 cost: 1.3622 min: 0.7612 max: 3.3774 USE_META, weight: 0.8970 cost: 1.0607 min: 0.7612 max: 3.3774 USE_META, weight: 0.7880 cost: 1.3774 min: 0.7612 max: 3.3774 USE_META, weight: 0.7556 cost: 1.4715 min: 0.7612 max: 3.3774 USE_META, weight: 0.8694 cost: 1.1410 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.7908 cost: 1.3693 min: 0.7612 max: 3.3774 USE_META, weight: 0.7417 cost: 1.5121 min: 0.7612 max: 3.3774 USE_META, weight: 0.6131 cost: 1.8858 min: 0.7612 max: 3.3774 USE_META, weight: 0.6782 cost: 1.6967 min: 0.7612 max: 3.3774 USE_META, weight: 0.7648 cost: 1.4450 min: 0.7612 max: 3.3774 USE_META, weight: 0.7366 cost: 1.5270 min: 0.7612 max: 3.3774 USE_META, weight: 0.6492 cost: 1.7810 min: 0.7612 max: 3.3774 USE_META, weight: 0.6578 cost: 1.7560 min: 0.7612 max: 3.3774 USE_META, weight: 0.5889 cost: 1.9563 min: 0.7612 max: 3.3774 USE_META, weight: 0.7075 cost: 1.6115 min: 0.7612 max: 3.3774 USE_META, weight: 0.6504 cost: 1.7773 min: 0.7612 max: 3.3774 USE_META, weight: 0.6734 cost: 1.7107 min: 0.7612 max: 3.3774 USE_META, weight: 0.6705 cost: 1.7189 min: 0.7612 max: 3.3774 USE_META, weight: 0.7065 cost: 1.6145 min: 0.7612 max: 3.3774 USE_META, weight: 0.5989 cost: 1.9270 min: 0.7612 max: 3.3774 USE_META, weight: 0.6617 cost: 1.7446 min: 0.7612 max: 3.3774 USE_META, weight: 0.6869 cost: 1.6714 min: 0.7612 max: 3.3774 USE_META, weight: 0.7478 cost: 1.4944 min: 0.7612 max: 3.3774 USE_META, weight: 0.7524 cost: 1.4810 min: 0.7612 max: 3.3774 USE_META, weight: 0.6357 cost: 1.8201 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.7783 cost: 1.4056 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 1.0000 cost: 0.7612 min: 0.7612 max: 3.3774 USE_META, weight: 0.8923 cost: 1.0742 min: 0.7612 max: 3.3774 USE_META, weight: 0.8801 cost: 1.1096 min: 0.7612 max: 3.3774 USE_META, weight: 0.9684 cost: 0.8530 min: 0.7612 max: 3.3774 USE_META, weight: 0.9157 cost: 1.0064 min: 0.7612 max: 3.3774 USE_META, weight: 0.8755 cost: 1.1232 min: 0.7612 max: 3.3774 USE_META, weight: 0.9023 cost: 1.0452 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8225 cost: 1.2771 min: 0.7612 max: 3.3774 USE_META, weight: 0.8765 cost: 1.1202 min: 0.7612 max: 3.3774 USE_META, weight: 0.7744 cost: 1.4169 min: 0.7612 max: 3.3774 USE_META, weight: 0.7041 cost: 1.6212 min: 0.7612 max: 3.3774 USE_META, weight: 0.7120 cost: 1.5983 min: 0.7612 max: 3.3774 USE_META, weight: 0.4501 cost: 2.3596 min: 0.7612 max: 3.3774 USE_META, weight: 0.6706 cost: 1.7188 min: 0.7612 max: 3.3774 USE_META, weight: 0.7765 cost: 1.4108 min: 0.7612 max: 3.3774 USE_META, weight: 0.7540 cost: 1.4762 min: 0.7612 max: 3.3774 USE_META, weight: 0.9165 cost: 1.0038 min: 0.7612 max: 3.3774 USE_META, weight: 0.7773 cost: 1.4085 min: 0.7612 max: 3.3774 USE_META, weight: 0.7350 cost: 1.5315 min: 0.7612 max: 3.3774 USE_META, weight: 0.7169 cost: 1.5843 min: 0.7612 max: 3.3774 USE_META, weight: 0.6968 cost: 1.6426 min: 0.7612 max: 3.3774 USE_META, weight: 0.7359 cost: 1.5290 min: 0.7612 max: 3.3774 USE_META, weight: 0.7205 cost: 1.5736 min: 0.7612 max: 3.3774 USE_META, weight: 0.7196 cost: 1.5762 min: 0.7612 max: 3.3774 USE_META, weight: 0.7597 cost: 1.4598 min: 0.7612 max: 3.3774 USE_META, weight: 0.7597 cost: 1.4598 min: 0.7612 max: 3.3774 USE_META, weight: 0.7182 cost: 1.5803 min: 0.7612 max: 3.3774 USE_META, weight: 0.7773 cost: 1.4085 min: 0.7612 max: 3.3774 USE_META, weight: 0.8908 cost: 1.0788 min: 0.7612 max: 3.3774 USE_META, weight: 0.7572 cost: 1.4670 min: 0.7612 max: 3.3774 USE_META, weight: 0.8503 cost: 1.1963 min: 0.7612 max: 3.3774 USE_EVALUE, weight: 0.8121 eval: 19.3370 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.8121 eval: 19.3370 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.8121 eval: 19.3370 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1801 eval: 43.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1801 eval: 43.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1801 eval: 43.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1000 eval: 46.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1000 eval: 46.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.1000 eval: 46.0000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.8769 eval: 16.9110 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.8769 eval: 16.9110 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.8769 eval: 16.9110 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.3751 eval: 35.7000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.3751 eval: 35.7000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.3751 eval: 35.7000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 1.0000 eval: 12.3000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 1.0000 eval: 12.3000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 1.0000 eval: 12.3000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2656 eval: 39.8000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2656 eval: 39.8000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2656 eval: 39.8000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2228 eval: 41.4000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2228 eval: 41.4000 min: 12.3000 max: 46.0000 USE_EVALUE, weight: 0.2228 eval: 41.4000 min: 12.3000 max: 46.0000 Number of contacts in models: 243 Number of contacts in alignments: 24 NUMB_ALIGNS: 24 Adding 5993 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -222.6112, CN propb: -222.6112 weights: 0.3090 constraints: 241 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 241 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 241 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 5752 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 5752 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 5993 # command: