# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0284/ # command:# Making conformation for sequence T0284 numbered 1 through 287 Created new target T0284 from T0284.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0284/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0284/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0284//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0284/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0284/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0284/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2czdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2czdA expands to /projects/compbio/data/pdb/2czd.pdb.gz 2czdA:# T0284 read from 2czdA/merged-good-all-a2m # 2czdA read from 2czdA/merged-good-all-a2m # adding 2czdA to template set # found chain 2czdA in template set Warning: unaligning (T0284)A257 because last residue in template chain is (2czdA)R206 T0284 22 :CYHTASVFDPMSA 2czdA 2 :IVLALDVYEGERA # choosing archetypes in rotamer library T0284 35 :RIAADL 2czdA 16 :KIAKSV T0284 42 :FECGILG 2czdA 25 :ISMIKVN T0284 70 :FVE 2czdA 34 :LIL T0284 73 :QATRIGRVARLPVIADADHG 2czdA 42 :IIRRLKEETGVEIIADLKLA T0284 94 :GNALNVMRTVVELERAGIAALTIEDTLL 2czdA 62 :DIPNTNRLIARKVFGAGADYVIVHTFVG T0284 139 :VGKIRAALEAR 2czdA 90 :RDSVMAVKELG T0284 153 :ALTIIAR 2czdA 101 :EIIMVVE T0284 160 :TNAELID 2czdA 109 :SHPGALE T0284 167 :VDAVIQRTLAYQ 2czdA 121 :TDRFIEVANEIE T0284 182 :ADGICLVGVR 2czdA 133 :PFGVIAPGTR T0284 193 :FAHLEAIAEHLH 2czdA 143 :PERIGYIRDRLK T0284 205 :IPLMLVTYGNPQL 2czdA 157 :IKILAPGIGAQGG T0284 219 :DDARLARLGVRVVVNGHAAY 2czdA 170 :KAKDAVKAGADYIIVGRAIY T0284 245 :TYDCLREERGAV 2czdA 194 :PREAAKAIYDEI Number of specific fragments extracted= 15 number of extra gaps= 0 total=15 Number of alignments=1 # 2czdA read from 2czdA/merged-good-all-a2m # found chain 2czdA in template set Warning: unaligning (T0284)A257 because last residue in template chain is (2czdA)R206 T0284 22 :CYHTASVFDPMSA 2czdA 2 :IVLALDVYEGERA T0284 35 :RIAADL 2czdA 16 :KIAKSV T0284 42 :FECGIL 2czdA 25 :ISMIKV T0284 49 :GSVAS 2czdA 31 :NWPLI T0284 57 :LA 2czdA 36 :LG T0284 59 :APD 2czdA 39 :GVD T0284 73 :QATRIGRVARLPVIADADHG 2czdA 42 :IIRRLKEETGVEIIADLKLA T0284 94 :GNALNVMRTVVELERAGIAALTIEDTLL 2czdA 62 :DIPNTNRLIARKVFGAGADYVIVHTFVG T0284 139 :VGKIRAALE 2czdA 90 :RDSVMAVKE T0284 152 :PA 2czdA 99 :LG T0284 154 :LTIIAR 2czdA 102 :IIMVVE T0284 160 :TNAELID 2czdA 109 :SHPGALE T0284 167 :VDAVIQRTLAY 2czdA 121 :TDRFIEVANEI T0284 182 :ADGICLVGVR 2czdA 133 :PFGVIAPGTR T0284 193 :FAHLEAIAEHLH 2czdA 143 :PERIGYIRDRLK T0284 205 :IPLMLVTYGNPQL 2czdA 157 :IKILAPGIGAQGG T0284 219 :DDARLARLGVRVVVNGHAAY 2czdA 170 :KAKDAVKAGADYIIVGRAIY T0284 245 :TYDCLREERGAV 2czdA 194 :PREAAKAIYDEI Number of specific fragments extracted= 18 number of extra gaps= 0 total=33 Number of alignments=2 # 2czdA read from 2czdA/merged-good-all-a2m # found chain 2czdA in template set T0284 22 :CYHTASVFDPMSA 2czdA 2 :IVLALDVYEGERA T0284 35 :RIAADL 2czdA 16 :KIAKSV T0284 41 :GFECGILGGSVASLQ 2czdA 24 :YISMIKVNWPLILGS T0284 73 :QATRIGRVARLPVIADADHG 2czdA 42 :IIRRLKEETGVEIIADLKLA T0284 94 :GNALNVMRTVVELERAGIAALTIEDTLLP 2czdA 62 :DIPNTNRLIARKVFGAGADYVIVHTFVGR T0284 140 :GKIRAALEAR 2czdA 91 :DSVMAVKELG T0284 153 :ALTIIARTN 2czdA 101 :EIIMVVEMS T0284 162 :A 2czdA 113 :A T0284 166 :DVDAVIQRTLAY 2czdA 120 :LTDRFIEVANEI T0284 182 :ADGICLVGVR 2czdA 133 :PFGVIAPGTR T0284 193 :FAHLEAIAEHLHI 2czdA 143 :PERIGYIRDRLKE T0284 206 :PLMLVTYGNPQLRDDARLARLGVRVVVNGHAAY 2czdA 157 :IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIY T0284 239 :FAAIKATYDC 2czdA 195 :REAAKAIYDE Number of specific fragments extracted= 13 number of extra gaps= 0 total=46 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b4kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b4kA expands to /projects/compbio/data/pdb/1b4k.pdb.gz 1b4kA:# T0284 read from 1b4kA/merged-good-all-a2m # 1b4kA read from 1b4kA/merged-good-all-a2m # adding 1b4kA to template set # found chain 1b4kA in template set T0284 23 :YHTASVFD 1b4kA 39 :ILPVFVLD T0284 31 :PMSARIAADLGFECGILG 1b4kA 69 :LIEAEEWVALGIPALALF T0284 56 :VLAAPDFALIT 1b4kA 93 :KKSLDAAEAYN T0284 69 :EFVEQATRIGRVA 1b4kA 107 :IAQRATRALRERF T0284 82 :RLPVIADAD 1b4kA 121 :ELGIITDVA T0284 92 :GYG 1b4kA 135 :THG T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1b4kA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 140 :GKIRAALEAR 1b4kA 180 :GRIGAIREAL T0284 150 :VDPALTIIA 1b4kA 193 :GHTNVRIMA T0284 159 :RTNAELI 1b4kA 205 :KYASAYY T0284 166 :DVDAVIQRTLAYQEAGADGICLV 1b4kA 238 :NSDEALHEVAADLAEGADMVMVK T0284 189 :GVRDFAHLEAIAEHLHIPLMLVTY 1b4kA 262 :GMPYLDIVRRVKDEFRAPTFVYQV T0284 219 :DD 1b4kA 286 :SG T0284 221 :ARLARLGVRVVVNGHAAYFA 1b4kA 311 :TAFKRAGADGILTYFAKQAA T0284 243 :KA 1b4kA 331 :EQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=61 Number of alignments=4 # 1b4kA read from 1b4kA/merged-good-all-a2m # found chain 1b4kA in template set T0284 10 :RAMFRALLDS 1b4kA 65 :IDQLLIEAEE T0284 37 :AADLGFECGILG 1b4kA 75 :WVALGIPALALF T0284 57 :LA 1b4kA 96 :LD T0284 59 :APDF 1b4kA 103 :NPEG T0284 69 :EFVEQATRIGR 1b4kA 107 :IAQRATRALRE T0284 80 :VARLPVIADADH 1b4kA 119 :FPELGIITDVAL T0284 93 :YG 1b4kA 133 :FT T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1b4kA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 136 :EEGVGKIRAALEARVDPALTIIA 1b4kA 179 :DGRIGAIREALESAGHTNVRIMA T0284 159 :RTNAELIDV 1b4kA 205 :KYASAYYGP T0284 168 :DAVIQRTLAYQEAGADGICLVG 1b4kA 240 :DEALHEVAADLAEGADMVMVKP T0284 190 :VRDFAHLEAIAEHLHIPLMLVTY 1b4kA 263 :MPYLDIVRRVKDEFRAPTFVYQV T0284 217 :LRDDA 1b4kA 286 :SGEYA T0284 222 :RLARLGVRVVVNGH 1b4kA 312 :AFKRAGADGILTYF T0284 245 :TYDCLREE 1b4kA 326 :AKQAAEQL Number of specific fragments extracted= 15 number of extra gaps= 0 total=76 Number of alignments=5 # 1b4kA read from 1b4kA/merged-good-all-a2m # found chain 1b4kA in template set T0284 31 :PMSARIAADLGFECGILGGSV 1b4kA 69 :LIEAEEWVALGIPALALFPVT T0284 56 :VLAAPDFALITLS 1b4kA 93 :KKSLDAAEAYNPE T0284 69 :EFVEQATRIGRVA 1b4kA 107 :IAQRATRALRERF T0284 82 :RLPVIADA 1b4kA 121 :ELGIITDV T0284 90 :DHGYG 1b4kA 144 :DDGYV T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLP 1b4kA 153 :SIDVLVRQALSHAEAGAQVVAPSDMMDG T0284 138 :GVGKIRAALEARVDPALTIIARTNAELI 1b4kA 181 :RIGAIREALESAGHTNVRIMAYSAKYAS T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRD 1b4kA 239 :SDEALHEVAADLAEGADMVMVKPGMP T0284 193 :FAHLEAIAEHLHIPLMLVTY 1b4kA 266 :LDIVRRVKDEFRAPTFVYQV T0284 242 :IKATYDCLREERGAVASDLTAS 1b4kA 286 :SGEYAMHMGAIQNGWLAESVIL T0284 273 :EEYQAW 1b4kA 308 :ESLTAF Number of specific fragments extracted= 11 number of extra gaps= 0 total=87 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h5yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h5yA expands to /projects/compbio/data/pdb/1h5y.pdb.gz 1h5yA:Skipped atom 208, because occupancy 0.5 <= existing 0.500 in 1h5yA Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1633, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 1h5yA # T0284 read from 1h5yA/merged-good-all-a2m # 1h5yA read from 1h5yA/merged-good-all-a2m # adding 1h5yA to template set # found chain 1h5yA in template set T0284 24 :HTASVFD 1h5yA 6 :RIIPCLD T0284 31 :PMSARIAADLGFE 1h5yA 36 :VEMAVRYEEEGAD T0284 44 :CGILG 1h5yA 50 :IAILD T0284 57 :LAAPDF 1h5yA 56 :TAAPEG T0284 67 :LSEFVEQATRIGRVARLPVIADA 1h5yA 62 :RATFIDSVKRVAEAVSIPVLVGG T0284 92 :GYGNALN 1h5yA 85 :GVRSLED T0284 103 :VVELERAGIAALTIE 1h5yA 92 :ATTLFRAGADKVSVN T0284 137 :EGV 1h5yA 108 :AAV T0284 140 :GKIRAALEAR 1h5yA 114 :QLVALLAREF T0284 151 :DPA 1h5yA 124 :GSQ T0284 154 :LTIIARTNAEL 1h5yA 130 :VAIDAKWNGEY T0284 169 :AVIQRTLAYQEAGADGICLVGV 1h5yA 155 :DAVKWAKEVEELGAGEILLTSI T0284 192 :DFAHLEAIAEHLHIPL 1h5yA 186 :DVELIRRVADSVRIPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1h5yA 202 :IASGGAGRVEHFYEAAAAGADAVLAASLFHF T0284 242 :IKATYDCLRE 1h5yA 237 :IAQVKRYLKE Number of specific fragments extracted= 15 number of extra gaps= 0 total=102 Number of alignments=7 # 1h5yA read from 1h5yA/merged-good-all-a2m # found chain 1h5yA in template set T0284 22 :CYHTASVF 1h5yA 7 :IIPCLDID T0284 31 :PMSARIAADLGFE 1h5yA 36 :VEMAVRYEEEGAD T0284 44 :CGILG 1h5yA 50 :IAILD T0284 57 :LAAPDF 1h5yA 56 :TAAPEG T0284 67 :LSEFVEQATRIGRVARLPVIADADH 1h5yA 62 :RATFIDSVKRVAEAVSIPVLVGGGV T0284 94 :GNALN 1h5yA 87 :RSLED T0284 103 :VVELERAGIAALTIED 1h5yA 92 :ATTLFRAGADKVSVNT T0284 137 :EGV 1h5yA 108 :AAV T0284 140 :GKIRAALEARVDPA 1h5yA 114 :QLVALLAREFGSQS T0284 154 :LTIIARTNAEL 1h5yA 130 :VAIDAKWNGEY T0284 169 :AVIQRTLAYQEAGADGICLVGVR 1h5yA 155 :DAVKWAKEVEELGAGEILLTSID T0284 192 :DFAHLEAIAEHLHIPLMLVTY 1h5yA 186 :DVELIRRVADSVRIPVIASGG T0284 217 :LRDDARLARL 1h5yA 207 :AGRVEHFYEA T0284 227 :GVRVVVNGHAAY 1h5yA 220 :GADAVLAASLFH T0284 245 :TYDCLREERGAVA 1h5yA 237 :IAQVKRYLKERGV Number of specific fragments extracted= 15 number of extra gaps= 0 total=117 Number of alignments=8 # 1h5yA read from 1h5yA/merged-good-all-a2m # found chain 1h5yA in template set T0284 32 :MSARIAADLGFECGILGGS 1h5yA 37 :EMAVRYEEEGADEIAILDI T0284 57 :LAAPDF 1h5yA 56 :TAAPEG T0284 67 :LSEFVEQATRIGRVARLPVIA 1h5yA 62 :RATFIDSVKRVAEAVSIPVLV T0284 92 :GYG 1h5yA 83 :GGG T0284 95 :NALN 1h5yA 88 :SLED T0284 103 :VVELERAGIAALTI 1h5yA 92 :ATTLFRAGADKVSV T0284 134 :CVEEGV 1h5yA 106 :NTAAVR T0284 140 :GKIRAALEARVDPALTIIARTN 1h5yA 114 :QLVALLAREFGSQSTVVAIDAK T0284 170 :VIQRTLAYQEAGADGICLVGVRD 1h5yA 156 :AVKWAKEVEELGAGEILLTSIDR T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1h5yA 187 :VELIRRVADSVRIPVIASGGA T0284 218 :RDDARLAR 1h5yA 208 :GRVEHFYE T0284 226 :LGVRVVVNGHAAY 1h5yA 219 :AGADAVLAASLFH T0284 253 :RGAVASDLTASELSKKY 1h5yA 232 :FRVLSIAQVKRYLKERG Number of specific fragments extracted= 13 number of extra gaps= 0 total=130 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kfcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kfcA expands to /projects/compbio/data/pdb/1kfc.pdb.gz 1kfcA:# T0284 read from 1kfcA/merged-good-all-a2m # 1kfcA read from 1kfcA/merged-good-all-a2m # adding 1kfcA to template set # found chain 1kfcA in template set Warning: unaligning (T0284)D192 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kfcA)L193 T0284 8 :ELRAMFRALLDSSRCYHTASV 1kfcA 3 :RYENLFAQLNDRREGAFVPFV T0284 29 :FDPMSARIAADLGFECGIL 1kfcA 32 :QSLKIIDTLIDAGADALEL T0284 49 :GSV 1kfcA 51 :GVP T0284 53 :SLQVLA 1kfcA 70 :RAFAAG T0284 65 :ITLSEFVEQATRIGRVA 1kfcA 76 :VTPAQCFEMLAIIREKH T0284 82 :RLPVIADAD 1kfcA 94 :TIPIGLLMY T0284 94 :GNA 1kfcA 109 :NGI T0284 100 :MRTVVELERAGIAALTIED 1kfcA 112 :DAFYARCEQVGVDSVLVAD T0284 133 :ICVEEGVGKIRAALEA 1kfcA 131 :VPVEESAPFRQAALRH T0284 153 :ALTIIARTNAELI 1kfcA 147 :NIAPIFICPPNAD T0284 168 :DAVIQRTLAY 1kfcA 160 :DDLLRQVASY T0284 181 :GADGICLV 1kfcA 170 :GRGYTYLL T0284 193 :FAHLEAIAEH 1kfcA 194 :HHLIEKLKEY T0284 204 :HIPLMLVTYGNPQLRDDARLARLGVRVVVNGH 1kfcA 204 :HAAPALQGFGISSPEQVSAAVRAGAAGAISGS T0284 240 :AAIKATYD 1kfcA 236 :AIVKIIEK T0284 248 :CLREERGAVASDLT 1kfcA 251 :MLAELRSFVSAMKA Number of specific fragments extracted= 16 number of extra gaps= 0 total=146 Number of alignments=10 # 1kfcA read from 1kfcA/merged-good-all-a2m # found chain 1kfcA in template set Warning: unaligning (T0284)D192 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kfcA)L193 T0284 7 :HELRAMFRALLDSSRCYHTASV 1kfcA 2 :ERYENLFAQLNDRREGAFVPFV T0284 29 :FDPMSARIAADLGFECGIL 1kfcA 32 :QSLKIIDTLIDAGADALEL T0284 49 :GSVA 1kfcA 51 :GVPF T0284 53 :SLQVLA 1kfcA 70 :RAFAAG T0284 65 :ITLSEFVEQATRIGR 1kfcA 76 :VTPAQCFEMLAIIRE T0284 80 :VARLPVIADAD 1kfcA 92 :HPTIPIGLLMY T0284 96 :ALNVM 1kfcA 103 :ANLVF T0284 101 :RTVVELERAGIAALTIED 1kfcA 113 :AFYARCEQVGVDSVLVAD T0284 133 :ICVEEGVGKIRAALE 1kfcA 131 :VPVEESAPFRQAALR T0284 152 :PALTIIARTNAELI 1kfcA 146 :HNIAPIFICPPNAD T0284 168 :DAVIQRTLA 1kfcA 160 :DDLLRQVAS T0284 180 :AG 1kfcA 169 :YG T0284 182 :ADGICL 1kfcA 172 :GYTYLL T0284 193 :FAHLEAIAEH 1kfcA 194 :HHLIEKLKEY T0284 204 :HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAA 1kfcA 204 :HAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKII T0284 242 :IKATYDCLREERGAVA 1kfcA 252 :LAELRSFVSAMKAASR Number of specific fragments extracted= 16 number of extra gaps= 0 total=162 Number of alignments=11 # 1kfcA read from 1kfcA/merged-good-all-a2m # found chain 1kfcA in template set Warning: unaligning (T0284)G189 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kfcA)L193 T0284 4 :ASHHELRAMFRA 1kfcA 2 :ERYENLFAQLND T0284 19 :SSR 1kfcA 14 :RRE T0284 22 :CYHTASVF 1kfcA 21 :PFVTLGDP T0284 30 :DPMSARIAADLGFECGILG 1kfcA 33 :SLKIIDTLIDAGADALELG T0284 51 :VASLQ 1kfcA 65 :QNANL T0284 63 :ALITLSEFVEQATRIGRVA 1kfcA 74 :AGVTPAQCFEMLAIIREKH T0284 82 :RLPVIADA 1kfcA 94 :TIPIGLLM T0284 96 :ALNVM 1kfcA 103 :ANLVF T0284 101 :RTVVELERAGIAALTIED 1kfcA 113 :AFYARCEQVGVDSVLVAD T0284 133 :ICVEEGVGKIRAALEA 1kfcA 131 :VPVEESAPFRQAALRH T0284 153 :ALTIIARTN 1kfcA 147 :NIAPIFICP T0284 167 :VDAVIQRTL 1kfcA 159 :DDDLLRQVA T0284 179 :EAGADGICLV 1kfcA 168 :SYGRGYTYLL T0284 193 :FAHLEAIAE 1kfcA 194 :HHLIEKLKE T0284 203 :LHIPLMLVTY 1kfcA 203 :YHAAPALQGF T0284 216 :QLRDDARLARL 1kfcA 213 :GISSPEQVSAA T0284 227 :GVRVVVNGHAAYFAAIKA 1kfcA 227 :GAAGAISGSAIVKIIEKN T0284 245 :TYDCLREERG 1kfcA 251 :MLAELRSFVS Number of specific fragments extracted= 18 number of extra gaps= 0 total=180 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1igs/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1igs expands to /projects/compbio/data/pdb/1igs.pdb.gz 1igs:Warning: there is no chain 1igs will retry with 1igsA # T0284 read from 1igs/merged-good-all-a2m # 1igs read from 1igs/merged-good-all-a2m # adding 1igs to template set # found chain 1igs in template set T0284 8 :ELRAMFRALLDSSRCYHTASVFD 1igs 32 :SLNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1igs 67 :IEYSKFMERY T0284 42 :FECGIL 1igs 77 :AVGLSI T0284 57 :LAAPDFALITLSEF 1igs 83 :LTEEKYFNGSYETL T0284 75 :TRIGRVARLPVIADADH 1igs 97 :RKIASSVSIPILMKDFI T0284 100 :MRTVVELERAGIAALTIEDTLLPA 1igs 116 :ESQIDDAYNLGADTVLLIVKILTE T0284 136 :EEGVGKIRAALEARV 1igs 140 :RELESLLEYARSYGM T0284 153 :ALTIIART 1igs 155 :EPLIEIND T0284 168 :DAVIQRTLA 1igs 163 :ENDLDIALR T0284 180 :AGADGICLVGV 1igs 172 :IGARFIGINSR T0284 191 :RDFAHLEAIAEHLH 1igs 189 :INKENQRKLISMIP T0284 205 :I 1igs 205 :V T0284 207 :LMLVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1igs 206 :VKVAESGISERNEIEELRKLGVNAFLIGSSLMR Number of specific fragments extracted= 13 number of extra gaps= 0 total=193 Number of alignments=13 # 1igs read from 1igs/merged-good-all-a2m # found chain 1igs in template set T0284 4 :ASHHELRAMFRALLDSSRCYHTASVFD 1igs 28 :RPIISLNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1igs 67 :IEYSKFMERY T0284 42 :FECGIL 1igs 77 :AVGLSI T0284 57 :LAAPDFALITLSE 1igs 83 :LTEEKYFNGSYET T0284 74 :ATRIGRVARLPVIADADH 1igs 96 :LRKIASSVSIPILMKDFI T0284 100 :MRTVVELERAGIAALTIEDTLLPA 1igs 116 :ESQIDDAYNLGADTVLLIVKILTE T0284 136 :EEGVGKIRAALE 1igs 140 :RELESLLEYARS T0284 152 :PA 1igs 152 :YG T0284 154 :LTIIART 1igs 156 :PLIEIND T0284 168 :DAVIQRTL 1igs 163 :ENDLDIAL T0284 179 :EAGADGICLVGVR 1igs 171 :RIGARFIGINSRD T0284 192 :DFAHLEAIAEHLH 1igs 190 :NKENQRKLISMIP T0284 205 :I 1igs 205 :V T0284 207 :LMLVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1igs 206 :VKVAESGISERNEIEELRKLGVNAFLIGSSLMR T0284 261 :TASELSK 1igs 239 :NPEKIKE Number of specific fragments extracted= 15 number of extra gaps= 0 total=208 Number of alignments=14 # 1igs read from 1igs/merged-good-all-a2m # found chain 1igs in template set T0284 9 :LRAMFRALLDSSRCYHTASVFD 1igs 33 :LNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1igs 67 :IEYSKFMERY T0284 42 :FECGIL 1igs 77 :AVGLSI T0284 57 :LAAPDFALIT 1igs 83 :LTEEKYFNGS T0284 71 :VEQATRIGRVARLPVIADA 1igs 93 :YETLRKIASSVSIPILMKD T0284 100 :MRTVVELERAGIAALTIEDTLLP 1igs 116 :ESQIDDAYNLGADTVLLIVKILT T0284 135 :VEEGVGKIRAALEARV 1igs 139 :ERELESLLEYARSYGM T0284 153 :ALTIIAR 1igs 155 :EPLIEIN T0284 167 :VDAVI 1igs 162 :DENDL T0284 175 :LAYQEAGADGICLVGVRD 1igs 167 :DIALRIGARFIGINSRDL T0284 193 :FAHLEAIAEHLHI 1igs 191 :KENQRKLISMIPS T0284 206 :PLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1igs 205 :VVKVAESGISERNEIEELRKLGVNAFLIGSSLMR Number of specific fragments extracted= 12 number of extra gaps= 0 total=220 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w8sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w8sA expands to /projects/compbio/data/pdb/1w8s.pdb.gz 1w8sA:Skipped atom 267, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 790, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 792, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1672, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1674, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1676, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1678, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1680, because occupancy 0.350 <= existing 0.650 in 1w8sA # T0284 read from 1w8sA/merged-good-all-a2m # 1w8sA read from 1w8sA/merged-good-all-a2m # adding 1w8sA to template set # found chain 1w8sA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDP 1w8sA 4 :LTEKFLRIFARRGKSIILAYDHG T0284 33 :SA 1w8sA 27 :IE T0284 35 :RIAADLGFECGILG 1w8sA 48 :RLARDAGFDGVVFQ T0284 67 :LSEFVE 1w8sA 62 :RGIAEK T0284 80 :VA 1w8sA 68 :YY T0284 82 :RLPVIADAD 1w8sA 72 :SVPLILKLN T0284 91 :H 1w8sA 84 :T T0284 93 :YGN 1w8sA 86 :YNG T0284 103 :VVELERAGIAALTIE 1w8sA 98 :VEEAVSLGASAVGYT T0284 120 :L 1w8sA 115 :P T0284 126 :GRKS 1w8sA 116 :GSGF T0284 135 :VEEGVGKIRAALEAR 1w8sA 120 :EWKMFEELARIKRDA T0284 150 :V 1w8sA 137 :F T0284 153 :ALTIIARTNAELID 1w8sA 138 :DLPLVVESFPRGGK T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 1w8sA 158 :PEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAG T0284 205 :IPLMLVTYGNPQ 1w8sA 197 :VPVLMSGGPKTK T0284 219 :DD 1w8sA 209 :TE T0284 221 :ARLARLGVRVVVNGHAAY 1w8sA 218 :EGVLEAGALGIAVGRNVW T0284 245 :TYDCLREERGAV 1w8sA 240 :ALKFARALAELV Number of specific fragments extracted= 19 number of extra gaps= 0 total=239 Number of alignments=16 # 1w8sA read from 1w8sA/merged-good-all-a2m # found chain 1w8sA in template set Warning: unaligning (T0284)E8 because first residue in template chain is (1w8sA)N3 Warning: unaligning (T0284)A257 because last residue in template chain is (1w8sA)Y252 T0284 9 :LRAMFRALLDSSRCYHTASVFDP 1w8sA 4 :LTEKFLRIFARRGKSIILAYDHG T0284 32 :MSARIAADLGFECGIL 1w8sA 45 :YILRLARDAGFDGVVF T0284 49 :GSVASLQ 1w8sA 61 :QRGIAEK T0284 80 :VARLPVIADA 1w8sA 70 :DGSVPLILKL T0284 90 :DHG 1w8sA 90 :PVS T0284 93 :YGNALNV 1w8sA 95 :NCSVEEA T0284 107 :ERAGIAALTIEDTLL 1w8sA 102 :VSLGASAVGYTIYPG T0284 125 :FGR 1w8sA 117 :SGF T0284 135 :VEEGVGKIRAALEA 1w8sA 120 :EWKMFEELARIKRD T0284 149 :RVDPALTIIARTNAELID 1w8sA 136 :KFDLPLVVESFPRGGKVV T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 1w8sA 158 :PEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAG T0284 205 :IPLMLVTYGNPQLR 1w8sA 197 :VPVLMSGGPKTKTE T0284 219 :DDARLARLGVRVVVNGHAAY 1w8sA 216 :QVEGVLEAGALGIAVGRNVW T0284 245 :TYDCLREERGAV 1w8sA 240 :ALKFARALAELV Number of specific fragments extracted= 14 number of extra gaps= 0 total=253 Number of alignments=17 # 1w8sA read from 1w8sA/merged-good-all-a2m # found chain 1w8sA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPM 1w8sA 4 :LTEKFLRIFARRGKSIILAYDHGI T0284 34 :ARIAADLGFECGILGGSVASLQ 1w8sA 47 :LRLARDAGFDGVVFQRGIAEKY T0284 57 :L 1w8sA 69 :Y T0284 82 :RLPVIADA 1w8sA 72 :SVPLILKL T0284 103 :VVELERAGIAALTIEDT 1w8sA 98 :VEEAVSLGASAVGYTIY T0284 123 :AQFGR 1w8sA 115 :PGSGF T0284 135 :VEEGVGKIRAALEARVDPALTIIARTNAELI 1w8sA 120 :EWKMFEELARIKRDAVKFDLPLVVESFPRGG T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 1w8sA 157 :APEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVA T0284 204 :HIPLMLVTYGNPQ 1w8sA 196 :KVPVLMSGGPKTK T0284 219 :DDARLAR 1w8sA 209 :TEEDFLK T0284 226 :LGVRVVVNGHAAY 1w8sA 223 :AGALGIAVGRNVW T0284 239 :FAAIKATYDCL 1w8sA 241 :LKFARALAELV Number of specific fragments extracted= 12 number of extra gaps= 0 total=265 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o5kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1o5kA/merged-good-all-a2m # 1o5kA read from 1o5kA/merged-good-all-a2m # found chain 1o5kA in training set Warning: unaligning (T0284)I185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1o5kA)E162 Warning: unaligning (T0284)L187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1o5kA)E162 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5kA)S207 Warning: unaligning (T0284)N233 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5kA)S207 T0284 21 :RCYHTASVFD 1o5kA 3 :RGVGTAIVTP T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1o5kA 24 :ERLVRYQLENGVNALIVLGTTGESP T0284 64 :LITLSEFVEQATRIGRVA 1o5kA 49 :TVNEDEREKLVSRTLEIV T0284 82 :RLPVIADA 1o5kA 69 :KIPVIVGA T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1o5kA 77 :GTNSTEKTLKLVKQAEKLGANGVLVVTPYYNK T0284 129 :S 1o5kA 109 :P T0284 135 :VEEGV 1o5kA 110 :TQEGL T0284 140 :GKIRAALEAR 1o5kA 116 :QHYKYISERT T0284 150 :VD 1o5kA 127 :LG T0284 155 :TIIARTNAEL 1o5kA 129 :IVVYNVPGRT T0284 166 :D 1o5kA 139 :G T0284 167 :VDAVIQRTLA 1o5kA 144 :PETAARIAAD T0284 181 :GADG 1o5kA 156 :NVVG T0284 188 :V 1o5kA 163 :A T0284 190 :VRDFAHLEAIAEHL 1o5kA 164 :NPDIDQIDRTVSLT T0284 204 :HI 1o5kA 183 :DF T0284 209 :LVTYGNPQL 1o5kA 185 :MVWSGNDDR T0284 220 :DARLARLGVRVV 1o5kA 194 :TFYLLCAGGDGV T0284 234 :GHAAYF 1o5kA 208 :VVSNVA T0284 242 :IKATYDCLREERG 1o5kA 214 :PKQMVELCAEYFS T0284 255 :AVASDLTASELS 1o5kA 235 :VHRKLRPLMKAL Number of specific fragments extracted= 21 number of extra gaps= 1 total=286 Number of alignments=19 # 1o5kA read from 1o5kA/merged-good-all-a2m # found chain 1o5kA in training set Warning: unaligning (T0284)I185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1o5kA)E162 Warning: unaligning (T0284)L187 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1o5kA)E162 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5kA)S207 Warning: unaligning (T0284)N233 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5kA)S207 T0284 21 :RCYHTASVFD 1o5kA 3 :RGVGTAIVTP T0284 31 :PMSARIAADLGFECGILGGSVASL 1o5kA 24 :ERLVRYQLENGVNALIVLGTTGES T0284 63 :ALITLSEFVEQATRIGR 1o5kA 48 :PTVNEDEREKLVSRTLE T0284 80 :VARLPVIADA 1o5kA 67 :DGKIPVIVGA T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1o5kA 77 :GTNSTEKTLKLVKQAEKLGANGVLVVTPYYNK T0284 133 :ICVEEGVGKIRAALE 1o5kA 109 :PTQEGLYQHYKYISE T0284 149 :RVDPALTII 1o5kA 124 :RTDLGIVVY T0284 159 :RTNAELI 1o5kA 133 :NVPGRTG T0284 166 :DVDAVIQRTLA 1o5kA 143 :LPETAARIAAD T0284 181 :GADG 1o5kA 156 :NVVG T0284 188 :VG 1o5kA 163 :AN T0284 191 :RDFAHLEAIAEHL 1o5kA 165 :PDIDQIDRTVSLT T0284 205 :I 1o5kA 184 :F T0284 209 :LVTYGNPQ 1o5kA 185 :MVWSGNDD T0284 219 :DDARLARLGVRVV 1o5kA 193 :RTFYLLCAGGDGV T0284 234 :GHA 1o5kA 208 :VVS T0284 242 :IKATYDCLREERGA 1o5kA 214 :PKQMVELCAEYFSG T0284 261 :TASELSK 1o5kA 228 :NLEKSRE T0284 274 :EYQAWARD 1o5kA 235 :VHRKLRPL Number of specific fragments extracted= 19 number of extra gaps= 1 total=305 Number of alignments=20 # 1o5kA read from 1o5kA/merged-good-all-a2m # found chain 1o5kA in training set Warning: unaligning (T0284)C186 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1o5kA)E162 Warning: unaligning (T0284)V188 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1o5kA)E162 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1o5kA)S207 Warning: unaligning (T0284)N233 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1o5kA)S207 T0284 31 :PMSARIAADLGFECGILGGSVAS 1o5kA 24 :ERLVRYQLENGVNALIVLGTTGE T0284 62 :FALITLSEFVEQATRIGRVA 1o5kA 47 :SPTVNEDEREKLVSRTLEIV T0284 82 :RLPVIADADH 1o5kA 69 :KIPVIVGAGT T0284 94 :GNALNVMRTVVELERAGIAALTIEDTLLPA 1o5kA 79 :NSTEKTLKLVKQAEKLGANGVLVVTPYYNK T0284 133 :ICVEEGVGKIRAALEAR 1o5kA 109 :PTQEGLYQHYKYISERT T0284 152 :PALTIIARTNAELI 1o5kA 126 :DLGIVVYNVPGRTG T0284 166 :DVDAVIQRTLA 1o5kA 143 :LPETAARIAAD T0284 182 :ADGI 1o5kA 156 :NVVG T0284 189 :GVRDFAHLEAIAEHL 1o5kA 163 :ANPDIDQIDRTVSLT T0284 208 :MLVTYGNPQ 1o5kA 184 :FMVWSGNDD T0284 222 :RLARLGVRVV 1o5kA 196 :YLLCAGGDGV T0284 234 :GHA 1o5kA 208 :VVS T0284 242 :IKATYDCLREERGAV 1o5kA 214 :PKQMVELCAEYFSGN T0284 258 :SDLTASELSKKYTF 1o5kA 229 :LEKSREVHRKLRPL Number of specific fragments extracted= 14 number of extra gaps= 1 total=319 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xkyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xkyA expands to /projects/compbio/data/pdb/1xky.pdb.gz 1xkyA:# T0284 read from 1xkyA/merged-good-all-a2m # 1xkyA read from 1xkyA/merged-good-all-a2m # adding 1xkyA to template set # found chain 1xkyA in template set Warning: unaligning (T0284)I165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)I145 Warning: unaligning (T0284)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xkyA)V205 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)V205 Warning: unaligning (T0284)N233 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)S206 T0284 22 :CYHTASVFD 1xkyA 6 :TIATAMVTP T0284 31 :PMSARIAADLGFECGILGGSVAS 1xkyA 27 :TKLVNYLIDNGTTAIVVGGTTGE T0284 62 :FALITLSEFVEQATRIGRVA 1xkyA 50 :SPTLTSEEKVALYRHVVSVV T0284 82 :RLPVIADA 1xkyA 72 :RVPVIAGT T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1xkyA 80 :GSNNTHASIDLTKKATEVGVDAVMLVAPYY T0284 127 :RKS 1xkyA 110 :NKP T0284 134 :CVEEGVGKIRAALEAR 1xkyA 113 :SQEGMYQHFKAIAEST T0284 153 :ALTIIA 1xkyA 129 :PLPVML T0284 159 :RTNAEL 1xkyA 136 :NVPGRS T0284 166 :DVDA 1xkyA 146 :SVDT T0284 174 :TLAYQEA 1xkyA 150 :VVRLSEI T0284 181 :GADGICLVGVR 1xkyA 158 :NIVAIKDAGGD T0284 193 :FAHLEAIAEHLH 1xkyA 169 :VLTMTEIIEKTA T0284 205 :IPL 1xkyA 183 :FAV T0284 210 :VTYGNPQ 1xkyA 186 :YSGDDGL T0284 220 :DARLARLGVRV 1xkyA 193 :TLPAMAVGAKG T0284 234 :GHAAYFA 1xkyA 207 :VASHVIG T0284 243 :KATYDCLREERG 1xkyA 214 :NEMQEMIAAFQA T0284 255 :AVAS 1xkyA 234 :LHQL Number of specific fragments extracted= 19 number of extra gaps= 2 total=338 Number of alignments=22 # 1xkyA read from 1xkyA/merged-good-all-a2m # found chain 1xkyA in template set Warning: unaligning (T0284)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xkyA)V205 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)V205 Warning: unaligning (T0284)N233 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)S206 T0284 21 :RCYHTASVFD 1xkyA 5 :GTIATAMVTP T0284 31 :PMSARIAADLGFECGIL 1xkyA 27 :TKLVNYLIDNGTTAIVV T0284 49 :GSVASLQ 1xkyA 44 :GGTTGES T0284 63 :ALITLSEFVEQATRIGR 1xkyA 51 :PTLTSEEKVALYRHVVS T0284 80 :VARLPVIADA 1xkyA 70 :DKRVPVIAGT T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1xkyA 80 :GSNNTHASIDLTKKATEVGVDAVMLVAPYYNK T0284 133 :ICVEEGVGKIRAALEA 1xkyA 112 :PSQEGMYQHFKAIAES T0284 152 :PALTIIARTNAELI 1xkyA 129 :PLPVMLYNVPGRSI T0284 166 :DVD 1xkyA 146 :SVD T0284 173 :RTLAYQEA 1xkyA 149 :TVVRLSEI T0284 181 :GADGICLVG 1xkyA 158 :NIVAIKDAG T0284 191 :RDFAHLEAIAEHLH 1xkyA 167 :GDVLTMTEIIEKTA T0284 205 :IPLML 1xkyA 183 :FAVYS T0284 215 :PQLRDDARLARLGVRV 1xkyA 188 :GDDGLTLPAMAVGAKG T0284 234 :GHAAYF 1xkyA 207 :VASHVI T0284 242 :IKATYDCLREERG 1xkyA 213 :GNEMQEMIAAFQA T0284 270 :TFPEEYQAWARDYME 1xkyA 226 :GEFKKAQKLHQLLVR Number of specific fragments extracted= 17 number of extra gaps= 1 total=355 Number of alignments=23 # 1xkyA read from 1xkyA/merged-good-all-a2m # found chain 1xkyA in template set Warning: unaligning (T0284)V230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xkyA)V205 Warning: unaligning (T0284)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)V205 Warning: unaligning (T0284)V232 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xkyA)S206 T0284 31 :PMSARIAADLGFECGILGGSVA 1xkyA 27 :TKLVNYLIDNGTTAIVVGGTTG T0284 61 :DFALITLSEFVEQATRIGRVA 1xkyA 49 :ESPTLTSEEKVALYRHVVSVV T0284 82 :RLPVIA 1xkyA 72 :RVPVIA T0284 90 :DHGYGNALNVMRTVVELERAGIAALTIEDTLLPA 1xkyA 78 :GTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNK T0284 133 :ICVEEGVGKIRAALEAR 1xkyA 112 :PSQEGMYQHFKAIAEST T0284 152 :PALTIIARTNAELI 1xkyA 129 :PLPVMLYNVPGRSI T0284 166 :DVD 1xkyA 146 :SVD T0284 173 :RTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1xkyA 149 :TVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGDDG T0284 220 :DARLARLGVR 1xkyA 194 :LPAMAVGAKG T0284 233 :NGHAA 1xkyA 207 :VASHV T0284 241 :AIKATYDCLREERGAV 1xkyA 212 :IGNEMQEMIAAFQAGE T0284 257 :ASDLTASELSK 1xkyA 230 :KAQKLHQLLVR Number of specific fragments extracted= 12 number of extra gaps= 1 total=367 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zlpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284/1zlpA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0284/1zlpA/merged-good-all-a2m.gz for input Trying 1zlpA/merged-good-all-a2m Error: Couldn't open file 1zlpA/merged-good-all-a2m or 1zlpA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q7zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1q7zA/merged-good-all-a2m # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0284 5 :SHHELRAMFRA 1q7zA 3 :NRREVSKLLSE T0284 21 :RCYHTASVFDPMSA 1q7zA 14 :RVLLLDGAYGTEFM T0284 35 :RIAADLGFECGILG 1q7zA 51 :RSYIESGSDVILTN T0284 49 :GSVASLQVLAAPDF 1q7zA 68 :ATRMKLRKHGLEDK T0284 67 :LSEFVEQATRIGR 1q7zA 82 :LDPIVRNAVRIAR T0284 80 :VARLPVIADAD 1q7zA 97 :AGEKLVFGDIG T0284 91 :HG 1q7zA 109 :TG T0284 93 :YGN 1q7zA 116 :LGS T0284 96 :ALNVMRTVVELERAGIAALTIED 1q7zA 125 :YENFRETVEIMVEEGVDGIIFET T0284 135 :VEEGVGKIRAALEAR 1q7zA 148 :FSDILELKAAVLAAR T0284 150 :VDPALTIIARTNAELI 1q7zA 164 :VSRDVFLIAHMTFDEK T0284 167 :VDAVIQRTLAYQEAGADGICLVGVR 1q7zA 339 :EEIVIKEAKTQVEKGAEVLDVNFGI T0284 192 :DFAHLEAIAEHL 1q7zA 368 :DVRYVEKIVQTL T0284 204 :HIPLMLV 1q7zA 384 :NVPLSLD T0284 212 :Y 1q7zA 391 :I T0284 218 :RDD 1q7zA 392 :QNV T0284 221 :ARLARLGVRVVVN 1q7zA 425 :NLLKKYGGTLIVL T0284 243 :KATYDCLREERGAVASD 1q7zA 448 :EERKEYFEKALKILERH Number of specific fragments extracted= 18 number of extra gaps= 0 total=385 Number of alignments=25 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0284 5 :SHHELRAMFRA 1q7zA 3 :NRREVSKLLSE T0284 21 :RCYHTASVFDPMS 1q7zA 14 :RVLLLDGAYGTEF T0284 34 :ARIAADLGFECGILG 1q7zA 50 :HRSYIESGSDVILTN T0284 49 :GSVASLQVLAAPDF 1q7zA 68 :ATRMKLRKHGLEDK T0284 67 :LSEFVEQATRIGR 1q7zA 82 :LDPIVRNAVRIAR T0284 80 :VARLPVIADADH 1q7zA 97 :AGEKLVFGDIGP T0284 92 :G 1q7zA 110 :G T0284 93 :YG 1q7zA 114 :YP T0284 95 :N 1q7zA 117 :G T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1q7zA 125 :YENFRETVEIMVEEGVDGIIFETFS T0284 137 :EGVGKIRAALEA 1q7zA 150 :DILELKAAVLAA T0284 149 :RVDPALTIIARTNAELID 1q7zA 163 :EVSRDVFLIAHMTFDEKG T0284 168 :DAVIQRTLAYQEAGADGICLVGVR 1q7zA 340 :EIVIKEAKTQVEKGAEVLDVNFGI T0284 192 :DFAHLEAIAEHL 1q7zA 368 :DVRYVEKIVQTL T0284 204 :HIPLMLVT 1q7zA 384 :NVPLSLDI T0284 218 :RDDA 1q7zA 392 :QNVD T0284 222 :RLARLGVRVVVNGH 1q7zA 426 :LLKKYGGTLIVLLM T0284 256 :VAS 1q7zA 440 :GKD T0284 259 :DLTASELSKKY 1q7zA 444 :PKSFEERKEYF T0284 272 :PEEYQAWARD 1q7zA 455 :EKALKILERH Number of specific fragments extracted= 20 number of extra gaps= 0 total=405 Number of alignments=26 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0284 6 :HHELRAMFRALLDSSRCYHTASVFD 1q7zA 86 :VRNAVRIARRAAGEKLVFGDIGPTG T0284 31 :PMSARIAADLGFECGIL 1q7zA 129 :RETVEIMVEEGVDGIIF T0284 49 :GSVASL 1q7zA 156 :AAVLAA T0284 56 :VLAAP 1q7zA 197 :ELDID T0284 63 :ALITLSEFVEQATRIGRVARLPVIADADHG 1q7zA 207 :CSLGPEEILPIFQELSQYTDKFLVVEPNAG T0284 93 :YG 1q7zA 247 :YP T0284 95 :NALNVMRTVVELERAGIAAL 1q7zA 250 :KPHDFAVHIDSYYELGVNIF T0284 123 :AQFGRK 1q7zA 271 :GCCGTT T0284 139 :VGKIRAALEARVD 1q7zA 277 :PEHVKLFRKVLGN T0284 152 :PALTIIA 1q7zA 313 :DHFVVIG T0284 159 :RTNAELI 1q7zA 321 :RINPAGR T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1q7zA 338 :NEEIVIKEAKTQVEKGAEVLDVNFGIE T0284 193 :FAHLEAIAEHL 1q7zA 417 :EEELEMKINLL T0284 204 :HIPLMLVTYGNPQLRDDARLAR 1q7zA 431 :GGTLIVLLMGKDVPKSFEERKE T0284 241 :AIKATYDCLREE 1q7zA 453 :YFEKALKILERH Number of specific fragments extracted= 15 number of extra gaps= 0 total=420 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rvgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rvgA expands to /projects/compbio/data/pdb/1rvg.pdb.gz 1rvgA:Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 607, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 611, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 613, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 615, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 617, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 619, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 621, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1035, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1037, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1326, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1328, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1330, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1358, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1360, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1364, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1617, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1619, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1621, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 1rvgA # T0284 read from 1rvgA/merged-good-all-a2m # 1rvgA read from 1rvgA/merged-good-all-a2m # adding 1rvgA to template set # found chain 1rvgA in template set T0284 10 :RAMFRALLDSSRCYHTASVFDPMSA 1rvgA 6 :LEILKKAREEGYGVGAFNVNNMEFL T0284 35 :RIAADLGFECGILGGSVA 1rvgA 35 :EAAEEQRSPVILALSEGA T0284 54 :LQ 1rvgA 53 :MK T0284 57 :LA 1rvgA 55 :YG T0284 67 :LSEFVEQATRIGRVARLPVIADADHG 1rvgA 57 :GRALTLMAVELAKEARVPVAVHLDHG T0284 94 :GNALN 1rvgA 83 :SSYES T0284 103 :VVELERAGIAALTIEDTLLP 1rvgA 88 :VLRALRAGFTSVMIDKSHED T0284 135 :VEEGVGKIRAALEARVDPALTIIART 1rvgA 108 :FETNVRETRRVVEAAHAVGVTVEAEL T0284 161 :NAELIDVDAVIQ 1rvgA 149 :DALLTNPEEARI T0284 176 :AYQEAGADGICLV 1rvgA 161 :FMERTGADYLAVA T0284 189 :GV 1rvgA 175 :GT T0284 192 :DFAHLEAIAEHLHIPL 1rvgA 190 :DHARLERIARLVPAPL T0284 210 :VTYGNPQLRDD 1rvgA 206 :VLHGASAVPPE T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDC 1rvgA 240 :KKAISLGIAKINTDTDLRLAFTALIREA T0284 253 :RG 1rvgA 268 :LN T0284 264 :ELSKKYTFPEEYQAWARD 1rvgA 270 :KNPKEFDPRKYLGPAREA Number of specific fragments extracted= 16 number of extra gaps= 0 total=436 Number of alignments=28 # 1rvgA read from 1rvgA/merged-good-all-a2m # found chain 1rvgA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARI 1rvgA 5 :GLEILKKAREEGYGVGAFNVNNMEFLQA T0284 37 :AADLGFECGILGGSVASL 1rvgA 37 :AEEQRSPVILALSEGAMK T0284 57 :LA 1rvgA 55 :YG T0284 67 :LSEFVEQATRIGRVARLPVIADADHG 1rvgA 57 :GRALTLMAVELAKEARVPVAVHLDHG T0284 94 :GNALNV 1rvgA 83 :SSYESV T0284 104 :VELERAGIAALTIEDTLL 1rvgA 89 :LRALRAGFTSVMIDKSHE T0284 134 :CVEEGVGKIRAALEARVDPALTIIART 1rvgA 107 :DFETNVRETRRVVEAAHAVGVTVEAEL T0284 161 :NAELIDVDAVIQRTLA 1rvgA 149 :DALLTNPEEARIFMER T0284 180 :AGADGICLVGVR 1rvgA 165 :TGADYLAVAIGT T0284 192 :DFAHLEAIAEHLHIPLMLVTYGNPQLRDDA 1rvgA 190 :DHARLERIARLVPAPLVLHGASAVPPELVE T0284 222 :RLARLGVRVVVNGHAAYFAA 1rvgA 241 :KAISLGIAKINTDTDLRLAF T0284 246 :YDCLREERGAVASDLTASELSK 1rvgA 261 :TALIREALNKNPKEFDPRKYLG T0284 273 :EEYQAWARDYME 1rvgA 283 :PAREAVKEVVKS Number of specific fragments extracted= 13 number of extra gaps= 0 total=449 Number of alignments=29 # 1rvgA read from 1rvgA/merged-good-all-a2m # found chain 1rvgA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADL 1rvgA 5 :GLEILKKAREEGYGVGAFNVNNMEFLQAVLEA T0284 41 :GFECGILGGSVASLQV 1rvgA 41 :RSPVILALSEGAMKYG T0284 67 :LSEFVEQATRIGRVARLPVIADADHGYG 1rvgA 57 :GRALTLMAVELAKEARVPVAVHLDHGSS T0284 100 :MRTVVELERAGIAALTIEDTLLP 1rvgA 85 :YESVLRALRAGFTSVMIDKSHED T0284 135 :VEEGVGKIRAALEARVDPALTIIART 1rvgA 108 :FETNVRETRRVVEAAHAVGVTVEAEL T0284 161 :NAELIDVDAVIQR 1rvgA 149 :DALLTNPEEARIF T0284 177 :YQEAGADGICLVGVRD 1rvgA 162 :MERTGADYLAVAIGTS T0284 193 :FAHLEAIAEHLHIPLMLVTY 1rvgA 191 :HARLERIARLVPAPLVLHGA T0284 213 :GNPQLRDDARLA 1rvgA 229 :GEAAGIHPEDIK T0284 225 :RLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSK 1rvgA 244 :SLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPARE Number of specific fragments extracted= 10 number of extra gaps= 0 total=459 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f8iA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284/1f8iA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0284/1f8iA/merged-good-all-a2m.gz for input Trying 1f8iA/merged-good-all-a2m Error: Couldn't open file 1f8iA/merged-good-all-a2m or 1f8iA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1muwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1muwA/merged-good-all-a2m # 1muwA read from 1muwA/merged-good-all-a2m # found chain 1muwA in training set Warning: unaligning (T0284)L47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1muwA)H53 Warning: unaligning (T0284)G48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1muwA)H53 Warning: unaligning (T0284)A182 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1muwA)I175 T0284 30 :DPMSARIAADLGFECGI 1muwA 35 :PVETVQRLAELGAHGVT T0284 53 :SLQVLAA 1muwA 56 :DLIPFGS T0284 66 :TLSEFVEQATRIGRVA 1muwA 63 :SDTERESHIKRFRQAL T0284 82 :RLPVIADA 1muwA 84 :TVPMATTN T0284 90 :DHGYG 1muwA 100 :DGGFT T0284 95 :N 1muwA 106 :N T0284 96 :ALNVMRTVVELERAGIAALTIEDTLL 1muwA 115 :LRKTIRNIDLAVELGAKTYVAWGGRE T0284 125 :FGRKSTD 1muwA 141 :GAESGAA T0284 133 :ICVEEGVGKIRAAL 1muwA 148 :KDVRVALDRMKEAF T0284 168 :DAVIQRTLA 1muwA 162 :DLLGEYVTS T0284 180 :AG 1muwA 171 :QG T0284 183 :DGICLVGV 1muwA 176 :RFAIEPKP T0284 191 :RDFAHLEAIAEHLHIPLM 1muwA 193 :PTVGHALAFIERLERPEL T0284 210 :VTYGNP 1muwA 211 :YGVNPE T0284 216 :QLRDD 1muwA 223 :AGLNF T0284 221 :ARLARLGV 1muwA 272 :DLLESAGY T0284 229 :RVVVNGHA 1muwA 283 :RHFDFKPP T0284 238 :YFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQ 1muwA 298 :VWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDE Number of specific fragments extracted= 18 number of extra gaps= 2 total=477 Number of alignments=31 # 1muwA read from 1muwA/merged-good-all-a2m # found chain 1muwA in training set Warning: unaligning (T0284)L47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1muwA)H53 Warning: unaligning (T0284)G48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1muwA)H53 Warning: unaligning (T0284)A182 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1muwA)I175 T0284 31 :PMSARIAADLGFECGI 1muwA 36 :VETVQRLAELGAHGVT T0284 49 :GSVA 1muwA 54 :DDDL T0284 55 :QVLAAP 1muwA 58 :IPFGSS T0284 67 :LSEFVEQATRIGRVAR 1muwA 64 :DTERESHIKRFRQALD T0284 83 :LPVIADA 1muwA 85 :VPMATTN T0284 90 :DHGYG 1muwA 100 :DGGFT T0284 95 :N 1muwA 107 :D T0284 96 :ALNVMRTVVELERAGIAALTIEDTLL 1muwA 115 :LRKTIRNIDLAVELGAKTYVAWGGRE T0284 125 :FGRKSTD 1muwA 141 :GAESGAA T0284 133 :ICVEEGVGKIRAAL 1muwA 148 :KDVRVALDRMKEAF T0284 168 :DAVIQRTL 1muwA 162 :DLLGEYVT T0284 179 :EAG 1muwA 170 :SQG T0284 183 :DGICLVGVR 1muwA 176 :RFAIEPKPN T0284 192 :DFAHLEAIAEHLHIP 1muwA 194 :TVGHALAFIERLERP T0284 208 :MLVT 1muwA 211 :YGVN T0284 222 :RLARLGVR 1muwA 273 :LLESAGYE T0284 230 :VVVNGH 1muwA 283 :RHFDFK T0284 236 :A 1muwA 297 :G T0284 241 :AIKATYDCLREERG 1muwA 298 :VWASAAGCMRNYLI T0284 262 :ASELSKKYTFPEEYQAWARDYME 1muwA 313 :KERAAAFRADPEVQEALRASRLD Number of specific fragments extracted= 20 number of extra gaps= 2 total=497 Number of alignments=32 # 1muwA read from 1muwA/merged-good-all-a2m # found chain 1muwA in training set Warning: unaligning (T0284)R218 because of BadResidue code BAD_PEPTIDE in next template residue (1muwA)G345 Warning: unaligning (T0284)D219 because of BadResidue code BAD_PEPTIDE at template residue (1muwA)G345 T0284 2 :HRASHHELRAMFRALLDSSR 1muwA 63 :SDTERESHIKRFRQALDATG T0284 22 :CYHTASVFD 1muwA 86 :PMATTNLFT T0284 31 :PMSARIAADLGFECGILGGS 1muwA 119 :IRNIDLAVELGAKTYVAWGG T0284 56 :VLAAPDFALITLSEFVEQATRIGRVARL 1muwA 139 :REGAESGAAKDVRVALDRMKEAFDLLGE T0284 90 :DHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQF 1muwA 258 :RFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTE T0284 134 :CVEEGVGKIRAALEARV 1muwA 294 :DIDGVWASAAGCMRNYL T0284 169 :AVIQRTLAYQE 1muwA 311 :ILKERAAAFRA T0284 193 :FAHLEAIAEHLHI 1muwA 322 :DPEVQEALRASRL T0284 209 :LVTYGNPQL 1muwA 335 :DELAQPTAA T0284 220 :DARLARL 1muwA 346 :VQELLAD T0284 254 :GAVASDLTASELSKKYTFPEEYQAWARD 1muwA 353 :RTAFEDFDVDAAAARGMAFERLDQLAMD Number of specific fragments extracted= 11 number of extra gaps= 1 total=508 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s2uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284/1s2uA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0284/1s2uA/merged-good-all-a2m.gz for input Trying 1s2uA/merged-good-all-a2m Error: Couldn't open file 1s2uA/merged-good-all-a2m or 1s2uA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rhcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1rhcA/merged-good-all-a2m # 1rhcA read from 1rhcA/merged-good-all-a2m # found chain 1rhcA in training set Warning: unaligning (T0284)R159 because of BadResidue code BAD_PEPTIDE in next template residue (1rhcA)I73 Warning: unaligning (T0284)T160 because of BadResidue code BAD_PEPTIDE at template residue (1rhcA)I73 T0284 21 :RCYHTAS 1rhcA 3 :TQIGYFA T0284 90 :DHGYGNALNVMRTVVELERAGIAALTIEDTLL 1rhcA 10 :SLEQYRPMDALEQAIRAEKVGFDSVWVDDHFH T0284 124 :QFGRKSTD 1rhcA 42 :PWYHDNAQ T0284 135 :VEEGVGKIRAALEAR 1rhcA 50 :SAQAWAWMGAALQAT T0284 152 :PALTIIA 1rhcA 65 :KKVFIST T0284 171 :IQRTLAYQEA 1rhcA 177 :PKGAKLAGMY T0284 182 :ADGICLVGVR 1rhcA 187 :GDHLMTVAAA T0284 193 :FAH 1rhcA 197 :PST T0284 196 :LEAIAEHLH 1rhcA 208 :FEEGAREAG T0284 205 :IPL 1rhcA 222 :MEH T0284 208 :MLVTYGNPQLRDD 1rhcA 226 :MLIWYSVDPDYDK T0284 221 :ARLARLGVRVVVNGHAAYFA 1rhcA 295 :ERFKEAGINHFCLGNSSPDV T0284 243 :KATYDCLREERGAVA 1rhcA 315 :NFGIDIFKEVIPAVR Number of specific fragments extracted= 13 number of extra gaps= 1 total=521 Number of alignments=34 # 1rhcA read from 1rhcA/merged-good-all-a2m # found chain 1rhcA in training set Warning: unaligning (T0284)R159 because of BadResidue code BAD_PEPTIDE in next template residue (1rhcA)I73 T0284 82 :RLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1rhcA 2 :KTQIGYFASLEQYRPMDALEQAIRAEKVGFDSVWVDDHFHP T0284 125 :FGRKS 1rhcA 43 :WYHDN T0284 133 :ICVEEGVGKIRAALEA 1rhcA 48 :AQSAQAWAWMGAALQA T0284 152 :PALTIIA 1rhcA 65 :KKVFIST T0284 160 :TNAELI 1rhcA 74 :TCPIMR T0284 166 :DV 1rhcA 81 :NP T0284 172 :QRTLAYQEA 1rhcA 178 :KGAKLAGMY T0284 182 :ADGICLVGVR 1rhcA 187 :GDHLMTVAAA T0284 193 :FAHLEAIAEHLH 1rhcA 205 :IPKFEEGAREAG T0284 205 :IPLMLVTYGNPQLRDDA 1rhcA 223 :EHAMLIWYSVDPDYDKA T0284 222 :RLARLGVRVVVNGHA 1rhcA 296 :RFKEAGINHFCLGNS T0284 242 :IKATYDCLREERGAVA 1rhcA 314 :VNFGIDIFKEVIPAVR Number of specific fragments extracted= 12 number of extra gaps= 1 total=533 Number of alignments=35 # 1rhcA read from 1rhcA/merged-good-all-a2m # found chain 1rhcA in training set Warning: unaligning (T0284)S27 because of BadResidue code BAD_PEPTIDE in next template residue (1rhcA)I73 Warning: unaligning (T0284)V28 because of BadResidue code BAD_PEPTIDE at template residue (1rhcA)I73 T0284 6 :H 1rhcA 53 :A T0284 10 :RAMFRALLDS 1rhcA 54 :WAWMGAALQA T0284 20 :SRCYHTA 1rhcA 65 :KKVFIST T0284 29 :FD 1rhcA 74 :TC T0284 31 :PMSARIAADL 1rhcA 83 :AIVAQTFATL T0284 41 :GFECGILG 1rhcA 98 :GRVGVAVG T0284 49 :GSVASLQV 1rhcA 107 :GEAMNEVP T0284 62 :FALITLSEFVEQATRIGRVARL 1rhcA 117 :GEWPSVPVRQDMTVEAVKVMRM T0284 84 :PVIA 1rhcA 189 :HLMT T0284 89 :AD 1rhcA 193 :VA T0284 94 :GNALNVMR 1rhcA 195 :AAPSTLKN T0284 102 :TVVELER 1rhcA 204 :TIPKFEE T0284 109 :AGI 1rhcA 215 :AGK T0284 112 :AALTIEDTLLPA 1rhcA 224 :HAMLIWYSVDPD T0284 126 :GRKSTDLICVEEGVGKI 1rhcA 253 :SMFKYKVYDPKEVQLHA T0284 143 :RAALEAR 1rhcA 275 :DTIKENY T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRD 1rhcA 287 :AEEMIKEIERFKEAGINHFCLGNSSP T0284 193 :FAHLEAIAEHLH 1rhcA 318 :IDIFKEVIPAVR Number of specific fragments extracted= 18 number of extra gaps= 1 total=551 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gzgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gzgA expands to /projects/compbio/data/pdb/1gzg.pdb.gz 1gzgA:Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 270, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 272, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 419, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 421, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 423, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 425, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 427, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 429, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 587, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 1241, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1243, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1245, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1247, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1249, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1251, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1253, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1255, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1257, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1259, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1261, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1453, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1455, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1457, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1459, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1461, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1463, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1465, because occupancy 0.200 <= existing 0.800 in 1gzgA Skipped atom 1491, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 1493, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 1495, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 1497, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 1499, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 1501, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2021, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2023, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2025, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2027, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2029, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2031, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2033, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2035, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2116, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2118, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2120, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2122, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2124, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2126, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2128, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2130, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2132, because occupancy 0.300 <= existing 0.700 in 1gzgA Skipped atom 2162, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2164, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2166, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2172, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2174, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2176, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2178, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2180, because occupancy 0.500 <= existing 0.500 in 1gzgA Skipped atom 2182, because occupancy 0.500 <= existing 0.500 in 1gzgA # T0284 read from 1gzgA/merged-good-all-a2m # 1gzgA read from 1gzgA/merged-good-all-a2m # adding 1gzgA to template set # found chain 1gzgA in template set Warning: unaligning (T0284)R159 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K205 Warning: unaligning (T0284)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1gzgA)K260 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K260 T0284 23 :YHTASVFD 1gzgA 39 :ILPVFVLD T0284 31 :PMSARIAADLGFECGILG 1gzgA 69 :LIEAEEWVALGIPALALF T0284 56 :VLAAPDFALIT 1gzgA 93 :KKSLDAAEAYN T0284 69 :EFVEQATRIGRVA 1gzgA 107 :IAQRATRALRERF T0284 82 :RLPVIADAD 1gzgA 121 :ELGIITDVA T0284 92 :GYG 1gzgA 135 :THG T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1gzgA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 140 :GKIRAALEAR 1gzgA 180 :GRIGAIREAL T0284 150 :VDPALTIIA 1gzgA 193 :GHTNVRVMA T0284 160 :TNAELI 1gzgA 206 :YASAYY T0284 166 :DVDAVIQRTLAYQEAGADGIC 1gzgA 238 :NSDEALHEVAADLAEGADMVM T0284 189 :GVRDFAHLEAIAEHLHIPLMLVTY 1gzgA 262 :GMPYLDIVRRVKDEFRAPTFVYQV T0284 219 :DD 1gzgA 286 :SG T0284 221 :ARLARLGVRVVVNGHAAYFA 1gzgA 311 :TAFKRAGADGILTYFAKQAA T0284 247 :DC 1gzgA 331 :EQ Number of specific fragments extracted= 15 number of extra gaps= 2 total=566 Number of alignments=37 # 1gzgA read from 1gzgA/merged-good-all-a2m # found chain 1gzgA in template set Warning: unaligning (T0284)R159 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K205 Warning: unaligning (T0284)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1gzgA)K260 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K260 Warning: unaligning (T0284)G189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gzgA)P261 T0284 10 :RAMFRALLDS 1gzgA 65 :IDQLLIEAEE T0284 37 :AADLGFECGILG 1gzgA 75 :WVALGIPALALF T0284 57 :LA 1gzgA 96 :LD T0284 59 :APDF 1gzgA 103 :NPEG T0284 70 :FVEQATRIGR 1gzgA 108 :AQRATRALRE T0284 80 :VARLPVIADADH 1gzgA 119 :FPELGIITDVAL T0284 93 :YG 1gzgA 133 :FT T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1gzgA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 136 :EEGVGKIRAALEARVDPALTIIA 1gzgA 179 :DGRIGAIREALESAGHTNVRVMA T0284 160 :TNAELIDV 1gzgA 206 :YASAYYGP T0284 168 :DAVIQRTLAYQEAGADGIC 1gzgA 240 :DEALHEVAADLAEGADMVM T0284 190 :VRDFAHLEAIAEHLHIPLMLVTY 1gzgA 263 :MPYLDIVRRVKDEFRAPTFVYQV T0284 218 :RDDA 1gzgA 287 :GEYA T0284 222 :RLARLGVRVVVNGH 1gzgA 312 :AFKRAGADGILTYF T0284 245 :TYDCLREER 1gzgA 326 :AKQAAEQLR Number of specific fragments extracted= 15 number of extra gaps= 2 total=581 Number of alignments=38 # 1gzgA read from 1gzgA/merged-good-all-a2m # found chain 1gzgA in template set Warning: unaligning (T0284)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1gzgA)K205 Warning: unaligning (T0284)A162 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K205 Warning: unaligning (T0284)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1gzgA)K260 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE at template residue (1gzgA)K260 Warning: unaligning (T0284)G189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gzgA)P261 T0284 31 :PMSARIAADLGFECGILGGSV 1gzgA 69 :LIEAEEWVALGIPALALFPVT T0284 56 :VLAAPDFALITL 1gzgA 93 :KKSLDAAEAYNP T0284 70 :FVEQATRIGRVA 1gzgA 108 :AQRATRALRERF T0284 82 :RLPVIADA 1gzgA 121 :ELGIITDV T0284 90 :DHGYG 1gzgA 144 :DDGYV T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLP 1gzgA 153 :SIDVLVRQALSHAEAGAQVVAPSDMMDG T0284 138 :GVGKIRAALEARVDPALTIIART 1gzgA 181 :RIGAIREALESAGHTNVRVMAYS T0284 163 :ELI 1gzgA 206 :YAS T0284 167 :VDAVIQRTLAYQEAGADGIC 1gzgA 239 :SDEALHEVAADLAEGADMVM T0284 190 :VRD 1gzgA 262 :GMP T0284 193 :FAHLEAIAEHLHIPLMLVTY 1gzgA 266 :LDIVRRVKDEFRAPTFVYQV T0284 213 :GNPQLR 1gzgA 299 :GWLAES T0284 220 :DARLARLGVRVVVNGHAAYF 1gzgA 310 :LTAFKRAGADGILTYFAKQA Number of specific fragments extracted= 13 number of extra gaps= 2 total=594 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1thfD/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1thfD/merged-good-all-a2m # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set T0284 21 :RCYHTASV 1thfD 5 :RIIACLDV T0284 31 :PMSARIAADLGFE 1thfD 33 :VELGKFYSEIGID T0284 44 :CGILG 1thfD 47 :LVFLD T0284 61 :DFALITLSEFVEQATRIGRVARLPVIADAD 1thfD 53 :TASVEKRKTMLELVEKVAEQIDIPFTVGGG T0284 93 :YGNAL 1thfD 83 :IHDFE T0284 102 :TVVELERAGIAALTIE 1thfD 88 :TASELILRGADKVSIN T0284 136 :EEGV 1thfD 104 :TAAV T0284 140 :GKIRAALEA 1thfD 111 :SLITQIAQT T0284 150 :VDPALTIIA 1thfD 120 :FGSQAVVVA T0284 159 :RTNAEL 1thfD 133 :RVDGEF T0284 166 :D 1thfD 146 :K T0284 167 :VDAV 1thfD 153 :LRDW T0284 174 :TLAYQEAGADGICLVGV 1thfD 157 :VVEVEKRGAGEILLTSI T0284 192 :DFAHLEAIAEHLHIPL 1thfD 183 :DTEMIRFVRPLTTLPI T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1thfD 199 :IASGGAGKMEHFLEAFLAGADAALAASVFHF T0284 245 :TYDCLREERG 1thfD 234 :VRELKEYLKK Number of specific fragments extracted= 16 number of extra gaps= 0 total=610 Number of alignments=40 # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set T0284 22 :CYHTASV 1thfD 6 :IIACLDV T0284 30 :DPMSARIAADLGFE 1thfD 32 :PVELGKFYSEIGID T0284 44 :CGILG 1thfD 47 :LVFLD T0284 61 :DFALITLSEFVEQATRIGRVARLPVIADADH 1thfD 53 :TASVEKRKTMLELVEKVAEQIDIPFTVGGGI T0284 94 :GNALN 1thfD 84 :HDFET T0284 103 :VVELERAGIAALTIEDT 1thfD 89 :ASELILRGADKVSINTA T0284 138 :GV 1thfD 106 :AV T0284 140 :GKIRAALEARVDPA 1thfD 111 :SLITQIAQTFGSQA T0284 154 :LTIIAR 1thfD 127 :VAIDAK T0284 160 :TNA 1thfD 134 :VDG T0284 170 :VIQRTLAYQEAGADGICLVGVR 1thfD 153 :LRDWVVEVEKRGAGEILLTSID T0284 192 :DFAHLEAIAEHLHIPLMLVTY 1thfD 183 :DTEMIRFVRPLTTLPIIASGG T0284 214 :NP 1thfD 204 :AG T0284 219 :DDARLARL 1thfD 206 :KMEHFLEA T0284 227 :GVRVVVNGHAAY 1thfD 217 :GADAALAASVFH T0284 245 :TYDCLREERGAVA 1thfD 234 :VRELKEYLKKHGV Number of specific fragments extracted= 16 number of extra gaps= 0 total=626 Number of alignments=41 # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set T0284 31 :PMSARIAADLGFECGILGG 1thfD 33 :VELGKFYSEIGIDELVFLD T0284 57 :LA 1thfD 52 :IT T0284 62 :FALITLSEFVEQATRIGRVARLPVIADA 1thfD 54 :ASVEKRKTMLELVEKVAEQIDIPFTVGG T0284 94 :G 1thfD 82 :G T0284 95 :N 1thfD 85 :D T0284 100 :MRTVVELERAGIAALTIE 1thfD 86 :FETASELILRGADKVSIN T0284 136 :EEGV 1thfD 104 :TAAV T0284 140 :GKIRAALEAR 1thfD 111 :SLITQIAQTF T0284 151 :DPALTIIAR 1thfD 121 :GSQAVVVAI T0284 167 :V 1thfD 153 :L T0284 171 :IQRTLAYQEAGADGICLVGVRD 1thfD 154 :RDWVVEVEKRGAGEILLTSIDR T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1thfD 184 :TEMIRFVRPLTTLPIIASGGA T0284 218 :RDDARLAR 1thfD 205 :GKMEHFLE T0284 226 :LGVRVVVNGHAA 1thfD 216 :AGADAALAASVF T0284 252 :ERGAVASDLTASELSKKY 1thfD 228 :HFREIDVRELKEYLKKHG Number of specific fragments extracted= 15 number of extra gaps= 0 total=641 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s2wA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1s2wA/merged-good-all-a2m # 1s2wA read from 1s2wA/merged-good-all-a2m # found chain 1s2wA in training set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)W64 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s2wA)W64 Warning: unaligning (T0284)L121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)G127 Warning: unaligning (T0284)K268 because last residue in template chain is (1s2wA)L278 T0284 7 :HELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1s2wA 5 :VKKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 68 :SEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTL 1s2wA 65 :TQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKL T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELID 1s2wA 128 :RAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG T0284 167 :VDAVIQRTLAYQEAGADGICLV 1s2wA 169 :LDEALKRAEAYRNAGADAILMH T0284 189 :GVRDFAHLEAIAEHLH 1s2wA 192 :KKADPSDIEAFMKAWN T0284 205 :IPL 1s2wA 210 :GPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1s2wA 213 :VIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYD T0284 255 :AVASDLTASELSK 1s2wA 265 :VEDKIVSVKEIFR Number of specific fragments extracted= 8 number of extra gaps= 0 total=649 Number of alignments=43 # 1s2wA read from 1s2wA/merged-good-all-a2m # found chain 1s2wA in training set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)W64 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s2wA)W64 Warning: unaligning (T0284)L121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)G127 Warning: unaligning (T0284)K268 because last residue in template chain is (1s2wA)L278 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1s2wA 6 :KKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 68 :SEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTL 1s2wA 65 :TQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKL T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELI 1s2wA 128 :RAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIA T0284 166 :DVDAVIQRTLAYQEAGADGICLVG 1s2wA 168 :GLDEALKRAEAYRNAGADAILMHS T0284 190 :VRDFAHLEAIAEHLH 1s2wA 193 :KADPSDIEAFMKAWN T0284 205 :IPLMLVTYGNPQL 1s2wA 210 :GPVVIVPTKYYKT T0284 219 :DDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1s2wA 223 :PTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSL T0284 259 :DLTASELSK 1s2wA 269 :IVSVKEIFR Number of specific fragments extracted= 8 number of extra gaps= 0 total=657 Number of alignments=44 # 1s2wA read from 1s2wA/merged-good-all-a2m # found chain 1s2wA in training set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)W64 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s2wA)W64 Warning: unaligning (T0284)L121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1s2wA)G127 Warning: unaligning (T0284)T130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1s2wA)G127 Warning: unaligning (T0284)E274 because last residue in template chain is (1s2wA)L278 T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1s2wA 7 :KTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 68 :SEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTL 1s2wA 65 :TQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKL T0284 131 :D 1s2wA 128 :R T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1s2wA 132 :LADIEEFALKIKACKDSQTDPDFCIVARVEAFIA T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1s2wA 168 :GLDEALKRAEAYRNAGADAILMHSKKA T0284 193 :FAHLEAIAEHL 1s2wA 196 :PSDIEAFMKAW T0284 204 :HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPE 1s2wA 208 :NQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVSVKEIFR Number of specific fragments extracted= 7 number of extra gaps= 0 total=664 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wv2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wv2A expands to /projects/compbio/data/pdb/1wv2.pdb.gz 1wv2A:# T0284 read from 1wv2A/merged-good-all-a2m # 1wv2A read from 1wv2A/merged-good-all-a2m # adding 1wv2A to template set # found chain 1wv2A in template set Warning: unaligning (T0284)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wv2A)I1069 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wv2A)I1069 Warning: unaligning (T0284)F271 because last residue in template chain is (1wv2A)K1251 T0284 21 :RCYHTASVFD 1wv2A 1019 :GSRLLVGTGK T0284 31 :PMSARIAADLGFECGILG 1wv2A 1033 :DETRRAIEASGAEIVTVA T0284 62 :FALI 1wv2A 1051 :VRRT T0284 81 :A 1wv2A 1070 :P T0284 82 :RLPVIADA 1wv2A 1073 :RYTILPNT T0284 91 :HGYGNALNVMRTVVELERAG 1wv2A 1081 :AGCYDAVEAVRTCRLARELL T0284 111 :IAALTIEDTLLPAQFGR 1wv2A 1103 :HNLVKLEVLADQKTLFP T0284 137 :EGVGKIRAALEARVD 1wv2A 1120 :NVVETLKAAEQLVKD T0284 153 :ALTIIARTNAELI 1wv2A 1135 :GFDVMVYTSDDPI T0284 173 :RTLAYQEAGADGICLVGV 1wv2A 1148 :IARQLAEIGCIAVMPLAG T0284 191 :RDFAHLEAIAEHLHIPLM 1wv2A 1174 :CNPYNLRIILEEAKVPVL T0284 210 :VTYGNPQLRDDARLARLGVRVVVNGHAAYFA 1wv2A 1192 :VDAGVGTASDAAIAMELGCEAVLMNTAIAHA T0284 245 :TYDCLREERGAVASDLTASELSKKYT 1wv2A 1225 :PVMMAEAMKHAIVAGRLAYLAGRMPR Number of specific fragments extracted= 13 number of extra gaps= 1 total=677 Number of alignments=46 # 1wv2A read from 1wv2A/merged-good-all-a2m # found chain 1wv2A in template set T0284 21 :RCYHTASVFDP 1wv2A 1019 :GSRLLVGTGKY T0284 32 :MSARIAADLGFECGILG 1wv2A 1034 :ETRRAIEASGAEIVTVA T0284 59 :APDFALI 1wv2A 1070 :PPDRYTI T0284 66 :TLSEFVEQATRIGR 1wv2A 1085 :DAVEAVRTCRLARE T0284 80 :VARL 1wv2A 1100 :LDGH T0284 84 :PVIADADH 1wv2A 1105 :LVKLEVLA T0284 93 :YGNALNVMRTVVELERAGIAALTIEDT 1wv2A 1118 :FPNVVETLKAAEQLVKDGFDVMVYTSD T0284 161 :NAE 1wv2A 1145 :DPI T0284 173 :RTLAYQEAGADGICLVGVR 1wv2A 1148 :IARQLAEIGCIAVMPLAGL T0284 192 :DFAHLEAIAEHLHIPLM 1wv2A 1175 :NPYNLRIILEEAKVPVL T0284 210 :VTYGNPQLRDDARLARLGVRVVVNGHAA 1wv2A 1192 :VDAGVGTASDAAIAMELGCEAVLMNTAI T0284 238 :YFAAIKATYDCLREERGAVAS 1wv2A 1229 :AEAMKHAIVAGRLAYLAGRMP Number of specific fragments extracted= 12 number of extra gaps= 0 total=689 Number of alignments=47 # 1wv2A read from 1wv2A/merged-good-all-a2m # found chain 1wv2A in template set Warning: unaligning (T0284)T66 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1wv2A)I1069 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1wv2A)I1069 T0284 21 :RCYHTASVFD 1wv2A 1019 :GSRLLVGTGK T0284 32 :MSARIAADLGFECGILG 1wv2A 1034 :ETRRAIEASGAEIVTVA T0284 62 :FALI 1wv2A 1051 :VRRT T0284 84 :PVIADADHGYGNALNVMRTVVELERA 1wv2A 1074 :YTILPNTAGCYDAVEAVRTCRLAREL T0284 110 :GIAALTIEDTLLPA 1wv2A 1102 :GHNLVKLEVLADQK T0284 130 :TDLICVEEGVGKIRAAL 1wv2A 1116 :TLFPNVVETLKAAEQLV T0284 152 :PALTIIARTNAE 1wv2A 1134 :DGFDVMVYTSDD T0284 171 :IQRTLAYQEAGADGICLVGVRD 1wv2A 1146 :PIIARQLAEIGCIAVMPLAGLI T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1wv2A 1176 :PYNLRIILEEAKVPVLVDAGV T0284 218 :RDDARLA 1wv2A 1197 :GTASDAA T0284 225 :RLGVRVVVNGHAA 1wv2A 1207 :ELGCEAVLMNTAI T0284 238 :YFAAIKATYDCLREERGAV 1wv2A 1229 :AEAMKHAIVAGRLAYLAGR Number of specific fragments extracted= 12 number of extra gaps= 1 total=701 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rvkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1rvkA/merged-good-all-a2m # 1rvkA read from 1rvkA/merged-good-all-a2m # found chain 1rvkA in training set T0284 7 :HELRAMFRALLDS 1rvkA 79 :ERLWQDLAHWQRG T0284 20 :S 1rvkA 94 :A T0284 27 :SVFDPMSARIAADL 1rvkA 95 :QLTDRTLAVVDCAL T0284 50 :SVASLQVLAAP 1rvkA 109 :WDLAGRSLGQP T0284 73 :QATRIGRVA 1rvkA 120 :VYKLIGGYR T0284 82 :RLPVIADADH 1rvkA 130 :KVLAYGSIMC T0284 92 :GYGNALNVMRTVVELERAGIAALTIED 1rvkA 146 :GLATPEDYGRFAETLVKRGYKGIKLHT T0284 125 :FGRKSTDLICVEEGVGKIRAALEAR 1rvkA 173 :WMPPVSWAPDVKMDLKACAAVREAV T0284 151 :DPALTIIART 1rvkA 198 :GPDIRLMIDA T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVG 1rvkA 208 :FHWYSRTDALALGRGLEKLGFDWIEEPM T0284 190 :VRDFAHLEAIAEHLHIPL 1rvkA 237 :EQSLSSYKWLSDNLDIPV T0284 210 :VTYGNPQLRDD 1rvkA 255 :VGPESAAGKHW T0284 221 :ARLARLGVRVVVNGHAAYFAA 1rvkA 297 :HLAEAFGMECEVHGNTAMNLH Number of specific fragments extracted= 13 number of extra gaps= 0 total=714 Number of alignments=49 # 1rvkA read from 1rvkA/merged-good-all-a2m # found chain 1rvkA in training set T0284 5 :SHHELRAMFRALLDS 1rvkA 77 :DRERLWQDLAHWQRG T0284 20 :SR 1rvkA 94 :AQ T0284 28 :VFDPMSARIAADL 1rvkA 96 :LTDRTLAVVDCAL T0284 50 :SVASLQVLAAP 1rvkA 109 :WDLAGRSLGQP T0284 73 :QATRIGRVAR 1rvkA 120 :VYKLIGGYRD T0284 83 :LPVIADADH 1rvkA 131 :VLAYGSIMC T0284 92 :GYGNALNVMRTVVELERAGIAALTIED 1rvkA 146 :GLATPEDYGRFAETLVKRGYKGIKLHT T0284 125 :FGRKSTDLICVEEGVGKIRAALEAR 1rvkA 173 :WMPPVSWAPDVKMDLKACAAVREAV T0284 151 :DPALTIIAR 1rvkA 198 :GPDIRLMID T0284 161 :NAELIDVDAVIQRTLAYQEAGADGICLVG 1rvkA 207 :AFHWYSRTDALALGRGLEKLGFDWIEEPM T0284 190 :VRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1rvkA 237 :EQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGME Number of specific fragments extracted= 11 number of extra gaps= 0 total=725 Number of alignments=50 # 1rvkA read from 1rvkA/merged-good-all-a2m # found chain 1rvkA in training set T0284 4 :ASHHELRAMFRALLDSSR 1rvkA 76 :RDRERLWQDLAHWQRGSA T0284 27 :SVFDPMSARIAADL 1rvkA 95 :QLTDRTLAVVDCAL T0284 50 :SVASLQVLAAP 1rvkA 109 :WDLAGRSLGQP T0284 77 :IGRVARL 1rvkA 120 :VYKLIGG T0284 84 :PVIADA 1rvkA 132 :LAYGSI T0284 90 :DHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1rvkA 144 :EGGLATPEDYGRFAETLVKRGYKGIKLHTWMPP T0284 123 :A 1rvkA 178 :S T0284 132 :LICVEEGVGKIRAALEAR 1rvkA 180 :APDVKMDLKACAAVREAV T0284 151 :DPALTIIA 1rvkA 198 :GPDIRLMI T0284 161 :NAELI 1rvkA 206 :DAFHW T0284 166 :DVDAVIQRTLAYQEAGADGICLVG 1rvkA 212 :SRTDALALGRGLEKLGFDWIEEPM T0284 190 :VRDFAHLEAIAEHLHIPLMLVTYG 1rvkA 237 :EQSLSSYKWLSDNLDIPVVGPESA T0284 216 :Q 1rvkA 261 :A T0284 218 :R 1rvkA 262 :G T0284 220 :DARLARL 1rvkA 264 :HWHRAEW T0284 227 :GVRVVVNGHAAY 1rvkA 275 :ACDILRTGVNDV T0284 239 :FAAIKATYDCLREE 1rvkA 289 :ITPALKTMHLAEAF Number of specific fragments extracted= 17 number of extra gaps= 0 total=742 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m3uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m3uA expands to /projects/compbio/data/pdb/1m3u.pdb.gz 1m3uA:Skipped atom 703, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 705, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 707, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 1827, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 1m3uA Skipped atom 1833, because occupancy 0.500 <= existing 0.500 in 1m3uA # T0284 read from 1m3uA/merged-good-all-a2m # 1m3uA read from 1m3uA/merged-good-all-a2m # adding 1m3uA to template set # found chain 1m3uA in template set Warning: unaligning (T0284)H7 because first residue in template chain is (1m3uA)P3 Warning: unaligning (T0284)F42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)N39 Warning: unaligning (T0284)E43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)N39 Warning: unaligning (T0284)D88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)L85 Warning: unaligning (T0284)A89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)L85 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLG 1m3uA 4 :TTISLLQKYKQEKKRFATITAYDYSFAKLFADEG T0284 44 :CGIL 1m3uA 40 :VMLV T0284 49 :GSVASLQVLAAPDFALITLSEFVEQATRIGRVA 1m3uA 44 :GDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA T0284 82 :RLPVIA 1m3uA 78 :NCLLLA T0284 90 :DH 1m3uA 86 :PF T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTL 1m3uA 89 :AYATPEQAFENAATVMRAGANMVKIEGGE T0284 137 :EGVGKIRAALEA 1m3uA 118 :WLVETVQMLTER T0284 153 :ALTIIART 1m3uA 130 :AVPVCGHL T0284 161 :NAEL 1m3uA 140 :TPQS T0284 166 :D 1m3uA 156 :G T0284 167 :VDAVIQRTLAYQEAGADGICLVGVR 1m3uA 160 :GDQLLSDALALEAAGAQLLVLECVP T0284 193 :FAHLEAIAEHLHIPL 1m3uA 185 :VELAKRITEALAIPV T0284 210 :VTYGNPQLRD 1m3uA 200 :IGIGAGNVTD T0284 230 :VVVNG 1m3uA 210 :GQILV T0284 249 :LREERG 1m3uA 215 :MHDAFG T0284 255 :AVASDLTASELSKKYTFPEE 1m3uA 243 :AVRQYMAEVESGVYPGEEHS Number of specific fragments extracted= 16 number of extra gaps= 2 total=758 Number of alignments=52 # 1m3uA read from 1m3uA/merged-good-all-a2m # found chain 1m3uA in template set Warning: unaligning (T0284)F42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)N39 Warning: unaligning (T0284)E43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)N39 Warning: unaligning (T0284)D88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)L85 Warning: unaligning (T0284)A89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)L85 T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADLG 1m3uA 6 :ISLLQKYKQEKKRFATITAYDYSFAKLFADEG T0284 44 :CGIL 1m3uA 40 :VMLV T0284 49 :GSVASLQVLAAPDFALITLSEFVEQATRIGR 1m3uA 44 :GDSLGMTVQGHDSTLPVTVADIAYHTAAVRR T0284 80 :VARLPVIA 1m3uA 76 :APNCLLLA T0284 90 :DH 1m3uA 86 :PF T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTL 1m3uA 89 :AYATPEQAFENAATVMRAGANMVKIEGGE T0284 137 :EGVGKIRAALE 1m3uA 118 :WLVETVQMLTE T0284 152 :PALTIIAR 1m3uA 129 :RAVPVCGH T0284 160 :TNAELIDV 1m3uA 139 :LTPQSVNI T0284 168 :DAVIQRTLAYQEAGADGICLVGVR 1m3uA 161 :DQLLSDALALEAAGAQLLVLECVP T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARL 1m3uA 185 :VELAKRITEALAIPVIGIGAGNVTDGQILVMHDA T0284 227 :GVRVVVNGHA 1m3uA 220 :GITGGHIPKF T0284 246 :YDCLREERGAVAS 1m3uA 241 :RAAVRQYMAEVES T0284 259 :DLTAS 1m3uA 256 :YPGEE Number of specific fragments extracted= 14 number of extra gaps= 2 total=772 Number of alignments=53 # 1m3uA read from 1m3uA/merged-good-all-a2m # found chain 1m3uA in template set Warning: unaligning (T0284)F42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)N39 Warning: unaligning (T0284)E43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)N39 Warning: unaligning (T0284)D88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1m3uA)L85 Warning: unaligning (T0284)A89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1m3uA)L85 T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADLG 1m3uA 6 :ISLLQKYKQEKKRFATITAYDYSFAKLFADEG T0284 44 :CGILGGSVASLQ 1m3uA 40 :VMLVGDSLGMTV T0284 57 :LAAPDFALITLSEFVEQATRIGRVA 1m3uA 52 :QGHDSTLPVTVADIAYHTAAVRRGA T0284 82 :RLPVIA 1m3uA 78 :NCLLLA T0284 90 :DH 1m3uA 86 :PF T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDT 1m3uA 89 :AYATPEQAFENAATVMRAGANMVKIEGG T0284 136 :EEGVGKIRAALEARVD 1m3uA 117 :EWLVETVQMLTERAVP T0284 154 :LTIIARTNAE 1m3uA 134 :CGHLGLTPQS T0284 167 :VDAVIQRTLAYQEAGADGICLVGVR 1m3uA 160 :GDQLLSDALALEAAGAQLLVLECVP T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1m3uA 185 :VELAKRITEALAIPVIGIGAG T0284 226 :LGVRVVVNGHAAY 1m3uA 206 :NVTDGQILVMHDA T0284 239 :FAAIKATYDCLRE 1m3uA 241 :RAAVRQYMAEVES Number of specific fragments extracted= 12 number of extra gaps= 2 total=784 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qwgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1qwgA/merged-good-all-a2m # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0284)L154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0284)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0284 22 :CYHTASVFDPMSA 1qwgA 16 :TVVLDKGLPPKFV T0284 35 :RIAADL 1qwgA 30 :DYLKVC T0284 42 :FECGIL 1qwgA 39 :IDFVKF T0284 49 :GS 1qwgA 45 :GW T0284 60 :PDFALITLSEFVEQATRIGRVA 1qwgA 47 :GTSAVIDRDVVKEKINYYKDWG T0284 82 :RL 1qwgA 70 :KV T0284 101 :RTVVELERAGIAALTIEDTLLPA 1qwgA 89 :EFLNECEKLGFEAVEISDGSSDI T0284 134 :CVEEGVGKIRAALEA 1qwgA 112 :SLEERNNAIKRAKDN T0284 153 :A 1qwgA 127 :G T0284 156 :IIART 1qwgA 130 :VLTEV T0284 161 :NAELIDVDAVIQRTLAYQEAGADGICLVGV 1qwgA 141 :KDKQLTIDDRIKLINFDLDAGADYVIIEGR T0284 192 :DFAHLEAIAEHLHIPLMLVTYG 1qwgA 186 :KENELDVLAKNVDINKVIFEAP T0284 219 :DDARLAR 1qwgA 208 :QKSQQVA T0284 226 :LGVRVVVNGHAAY 1qwgA 221 :SSVNLANIAFDEV T0284 243 :KATYDCLR 1qwgA 234 :ISLETLRR Number of specific fragments extracted= 15 number of extra gaps= 1 total=799 Number of alignments=55 # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0284)I111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0284)A112 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0284 4 :ASHHELRAMFRAL 1qwgA 23 :LPPKFVEDYLKVC T0284 42 :FECGIL 1qwgA 39 :IDFVKF T0284 49 :GS 1qwgA 45 :GW T0284 60 :PDFALITLSEFVEQATRIGR 1qwgA 47 :GTSAVIDRDVVKEKINYYKD T0284 80 :VAR 1qwgA 68 :GIK T0284 83 :LPVIADADHGYG 1qwgA 99 :FEAVEISDGSSD T0284 95 :NALNVMRTVVELERAG 1qwgA 112 :SLEERNNAIKRAKDNG T0284 113 :ALTIEDTLLPAQ 1qwgA 130 :VLTEVGKKMPDK T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVGVR 1qwgA 142 :DKQLTIDDRIKLINFDLDAGADYVIIEGRE T0284 192 :DFAHLEAIAEHLH 1qwgA 186 :KENELDVLAKNVD T0284 208 :MLVTY 1qwgA 202 :VIFEA T0284 214 :NPQLRDDARLARL 1qwgA 207 :PQKSQQVAFILKF T0284 227 :GVRVVVNG 1qwgA 222 :SVNLANIA Number of specific fragments extracted= 13 number of extra gaps= 1 total=812 Number of alignments=56 # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0284)L154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0284)T155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0284 22 :CYHTASVFDPMSARIAADL 1qwgA 16 :TVVLDKGLPPKFVEDYLKV T0284 41 :GFECGILG 1qwgA 38 :YIDFVKFG T0284 59 :APDFALITLSEFVEQATRIGRV 1qwgA 46 :WGTSAVIDRDVVKEKINYYKDW T0284 82 :RLPVIA 1qwgA 68 :GIKVYP T0284 92 :G 1qwgA 74 :G T0284 94 :GNALN 1qwgA 75 :GTLFE T0284 99 :VMRTVVELERAGIAALTIEDTLLP 1qwgA 87 :FDEFLNECEKLGFEAVEISDGSSD T0284 133 :ICVEEGVGKIRAALEA 1qwgA 111 :ISLEERNNAIKRAKDN T0284 153 :A 1qwgA 127 :G T0284 156 :IIARTNAELI 1qwgA 130 :VLTEVGKKMP T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1qwgA 146 :TIDDRIKLINFDLDAGADYVIIEGRES T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1qwgA 187 :ENELDVLAKNVDINKVIFEAP T0284 234 :GHAAYFAAIKAT 1qwgA 208 :QKSQQVAFILKF Number of specific fragments extracted= 13 number of extra gaps= 1 total=825 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gvfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1gvfA/merged-good-all-a2m # 1gvfA read from 1gvfA/merged-good-all-a2m # found chain 1gvfA in training set T0284 10 :RAMFRALLDSSRCYHTASVFDPMSA 1gvfA 7 :KYLLQDAQANGYAVPAFNIHNAETI T0284 35 :RIAADLGFECGILG 1gvfA 36 :EVCSEMRSPVILAG T0284 50 :SVASLQ 1gvfA 50 :TPGTFK T0284 64 :LITLSEFVEQATRIGRVARLPVIADADH 1gvfA 56 :HIALEEIYALCSAYSTTYNMPLALHLDH T0284 93 :YGNALNVMRTV 1gvfA 84 :HESLDDIRRKV T0284 108 :RAGIAALTIEDTLLPA 1gvfA 95 :HAGVRSAMIDGSHFPF T0284 136 :EEGVGKIRAALEARVDPALTIIART 1gvfA 111 :AENVKLVKSVVDFCHSQDCSVEAEL T0284 166 :DVDA 1gvfA 156 :DPQE T0284 174 :TLAYQE 1gvfA 160 :AKRFVE T0284 180 :AGADGICLV 1gvfA 167 :TGVDSLAVA T0284 189 :G 1gvfA 177 :G T0284 192 :DFAHLEAIAEHLHIPL 1gvfA 190 :DFQRLAEIREVVDVPL T0284 210 :VTYGNPQLRDD 1gvfA 206 :VLHGASDVPDE T0284 221 :ARLARLGVRVVVNGHAAY 1gvfA 219 :RRTIELGVTKVNVATELK T0284 243 :KATYDCLREERG 1gvfA 237 :IAFAGAVKAWFA T0284 255 :AVASDLTASE 1gvfA 263 :GMDAMKEVVR Number of specific fragments extracted= 16 number of extra gaps= 0 total=841 Number of alignments=58 # 1gvfA read from 1gvfA/merged-good-all-a2m # found chain 1gvfA in training set T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADL 1gvfA 7 :KYLLQDAQANGYAVPAFNIHNAETIQAILEV T0284 41 :GFECGILG 1gvfA 42 :RSPVILAG T0284 57 :LA 1gvfA 51 :PG T0284 64 :LITLSEFVEQATRIGRVARL 1gvfA 56 :HIALEEIYALCSAYSTTYNM T0284 84 :PVIADA 1gvfA 78 :ALHLDH T0284 93 :YGNALNVMRTV 1gvfA 84 :HESLDDIRRKV T0284 108 :RAGIAALTIEDTLL 1gvfA 95 :HAGVRSAMIDGSHF T0284 134 :CVEEGVGKIRAALEARVDPALTIIART 1gvfA 109 :PFAENVKLVKSVVDFCHSQDCSVEAEL T0284 168 :DAVIQRTLA 1gvfA 158 :QEAKRFVEL T0284 181 :GADGICLVGVR 1gvfA 168 :GVDSLAVAIGT T0284 192 :DFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFA 1gvfA 190 :DFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA T0284 245 :TYDCLREERGAVASDLTASELSKK 1gvfA 239 :FAGAVKAWFAENPQGNDPRYYMRV T0284 274 :EYQAWARDYME 1gvfA 263 :GMDAMKEVVRN Number of specific fragments extracted= 13 number of extra gaps= 0 total=854 Number of alignments=59 # 1gvfA read from 1gvfA/merged-good-all-a2m # found chain 1gvfA in training set T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADL 1gvfA 7 :KYLLQDAQANGYAVPAFNIHNAETIQAILEV T0284 41 :GFECGILGGSVASL 1gvfA 42 :RSPVILAGTPGTFK T0284 64 :LITLSEFVEQATRIGRVARLPVIADADHG 1gvfA 56 :HIALEEIYALCSAYSTTYNMPLALHLDHH T0284 94 :GNALNVMRTV 1gvfA 85 :ESLDDIRRKV T0284 108 :RAGIAALTIEDTLLP 1gvfA 95 :HAGVRSAMIDGSHFP T0284 135 :VEEGVGKIRAALEARVDPALTIIART 1gvfA 110 :FAENVKLVKSVVDFCHSQDCSVEAEL T0284 167 :VDA 1gvfA 157 :PQE T0284 174 :TLAYQE 1gvfA 160 :AKRFVE T0284 180 :AGADGICLVGVRD 1gvfA 167 :TGVDSLAVAIGTA T0284 193 :FAHLEAIAEHLHIPLMLVT 1gvfA 191 :FQRLAEIREVVDVPLVLHG T0284 215 :PQLRDDARLA 1gvfA 210 :ASDVPDEFVR T0284 225 :RLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKK 1gvfA 223 :ELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDA T0284 271 :FPEEYQ 1gvfA 267 :MKEVVR Number of specific fragments extracted= 13 number of extra gaps= 0 total=867 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f8mA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1f8mA/merged-good-all-a2m # 1f8mA read from 1f8mA/merged-good-all-a2m # found chain 1f8mA in training set T0284 7 :HELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1f8mA 50 :RRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGD T0284 56 :VLA 1f8mA 101 :LSG T0284 59 :APDFALITLSEFVEQATRIGRVA 1f8mA 106 :YPDQSLYPANSVPQVVRRINNAL T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1f8mA 149 :PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS T0284 123 :AQFGR 1f8mA 189 :KKCGH T0284 128 :KSTDLICVEEGVGKIRAALEAR 1f8mA 195 :GGKVLIPTQQHIRTLTSARLAA T0284 150 :VDPALTIIARTNAELI 1f8mA 219 :ADVPTVVIARTDAEAA T0284 166 :DVDAVIQRTLAYQEA 1f8mA 264 :GIEPCIARAKAYAPF T0284 182 :ADGICLV 1f8mA 279 :ADLIWME T0284 189 :GVRDFAHLEAIAEHL 1f8mA 287 :GTPDLEAARQFSEAV T0284 204 :HIPLMLVTYGNPQLRDD 1f8mA 304 :EYPDQMLAYNCSPSFNW T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1f8mA 334 :KELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQ T0284 257 :ASDLTASELSK 1f8mA 368 :NQMSAYVELQE T0284 268 :KYTFPEEY 1f8mA 381 :FAAEERGY Number of specific fragments extracted= 14 number of extra gaps= 0 total=881 Number of alignments=61 # 1f8mA read from 1f8mA/merged-good-all-a2m # found chain 1f8mA in training set T0284 2 :HRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASL 1f8mA 45 :EHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAG T0284 55 :QVLA 1f8mA 100 :NLSG T0284 59 :APDFALITLSEFVEQATRIGRVAR 1f8mA 106 :YPDQSLYPANSVPQVVRRINNALQ T0284 83 :LPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1f8mA 148 :APIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS T0284 123 :AQFGR 1f8mA 189 :KKCGH T0284 128 :KSTDLICVEEGVGKIRAALEA 1f8mA 195 :GGKVLIPTQQHIRTLTSARLA T0284 149 :RVDPALTIIARTNAELIDV 1f8mA 218 :VADVPTVVIARTDAEAATL T0284 168 :DAVIQRTLAYQEA 1f8mA 266 :EPCIARAKAYAPF T0284 182 :ADGICLVG 1f8mA 279 :ADLIWMET T0284 190 :VRDFAHLEAIAEHL 1f8mA 288 :TPDLEAARQFSEAV T0284 205 :IPLMLVTYGNPQLRDDA 1f8mA 305 :YPDQMLAYNCSPSFNWK T0284 222 :RLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1f8mA 335 :ELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMS T0284 271 :FPEEYQAWARDYME 1f8mA 372 :AYVELQEREFAAEE Number of specific fragments extracted= 13 number of extra gaps= 0 total=894 Number of alignments=62 # 1f8mA read from 1f8mA/merged-good-all-a2m # found chain 1f8mA in training set T0284 1 :MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1f8mA 44 :EEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGD T0284 57 :LAAPDFALITLSEFVEQATRIGRVARL 1f8mA 104 :HTYPDQSLYPANSVPQVVRRINNALQR T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1f8mA 149 :PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS T0284 123 :AQFGRKSTD 1f8mA 189 :KKCGHLGGK T0284 132 :LICVEEGVGKIRAAL 1f8mA 199 :LIPTQQHIRTLTSAR T0284 147 :EARVDPALTIIARTNAELI 1f8mA 216 :ADVADVPTVVIARTDAEAA T0284 167 :VDAVIQRTLAYQEA 1f8mA 265 :IEPCIARAKAYAPF T0284 182 :ADGICLVGVRD 1f8mA 279 :ADLIWMETGTP T0284 193 :FAHLEAIAEHL 1f8mA 291 :LEAARQFSEAV T0284 204 :HIPLMLVTYGNPQLRDD 1f8mA 304 :EYPDQMLAYNCSPSFNW T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1f8mA 334 :KELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMS T0284 271 :FPEEYQAWARDYME 1f8mA 372 :AYVELQEREFAAEE Number of specific fragments extracted= 12 number of extra gaps= 0 total=906 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tx2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tx2A expands to /projects/compbio/data/pdb/1tx2.pdb.gz 1tx2A:# T0284 read from 1tx2A/merged-good-all-a2m # 1tx2A read from 1tx2A/merged-good-all-a2m # adding 1tx2A to template set # found chain 1tx2A in template set Warning: unaligning (T0284)R3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)G36 Warning: unaligning (T0284)A4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)G36 Warning: unaligning (T0284)V51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0284)F62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0284 5 :SHHELRAMFRA 1tx2A 37 :GSYNEVDAAVR T0284 33 :SARIAADLGFECGILGGS 1tx2A 48 :HAKEMRDEGAHIIDIGGE T0284 63 :ALITLSE 1tx2A 72 :AKVSVEE T0284 70 :FVEQATRIGRVARLPVIADAD 1tx2A 83 :VVPMIQAVSKEVKLPISIDTY T0284 100 :MRTVVELERAGIAALTIEDTL 1tx2A 105 :AEVAKQAIEAGAHIINDIWGA T0284 136 :EEGVGKIRAALEA 1tx2A 126 :KAEPKIAEVAAHY T0284 153 :ALTIIARTNAELID 1tx2A 139 :DVPIILMHNRDNMN T0284 167 :VDAVIQRTLAYQE 1tx2A 157 :MADMIADLYDSIK T0284 180 :AGAD 1tx2A 174 :AGVR T0284 184 :GICLV 1tx2A 181 :IILDP T0284 189 :GVRDFAHLEAIAEHLH 1tx2A 189 :FAKTPEQNLEAMRNLE T0284 205 :IPLM 1tx2A 211 :YPVL T0284 211 :TYG 1tx2A 215 :LGT T0284 216 :QLRDD 1tx2A 218 :SRKSF T0284 221 :ARLARLGVRVVVNGH 1tx2A 243 :CLGIEKGCEFVRVHD T0284 242 :IKATYDCLREERGAV 1tx2A 258 :VKEMSRMAKMMDAMI Number of specific fragments extracted= 16 number of extra gaps= 1 total=922 Number of alignments=64 # 1tx2A read from 1tx2A/merged-good-all-a2m # found chain 1tx2A in template set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0284)F62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0284 6 :HHELRAMFRALLDSS 1tx2A 42 :VDAAVRHAKEMRDEG T0284 42 :FECGILGGS 1tx2A 57 :AHIIDIGGE T0284 63 :ALITLSE 1tx2A 72 :AKVSVEE T0284 70 :FVEQATRIGRVARLPVIADAD 1tx2A 83 :VVPMIQAVSKEVKLPISIDTY T0284 95 :NA 1tx2A 104 :KA T0284 101 :RTVVELERAGIAALTIEDTLLP 1tx2A 106 :EVAKQAIEAGAHIINDIWGAKA T0284 138 :GVGKIRAALEA 1tx2A 128 :EPKIAEVAAHY T0284 153 :ALTIIARTNAELID 1tx2A 139 :DVPIILMHNRDNMN T0284 167 :VDAVIQRT 1tx2A 157 :MADMIADL T0284 175 :LAYQEAGA 1tx2A 169 :KIAKDAGV T0284 184 :GICLVG 1tx2A 181 :IILDPG T0284 190 :VRDFAHLEAIAEHLH 1tx2A 190 :AKTPEQNLEAMRNLE T0284 205 :IPLMLVTYGNPQLRDDA 1tx2A 211 :YPVLLGTSRKSFIGHVL T0284 222 :RLARLGVRVVVNGH 1tx2A 244 :LGIEKGCEFVRVHD T0284 242 :IKATYDCLREERGA 1tx2A 258 :VKEMSRMAKMMDAM Number of specific fragments extracted= 15 number of extra gaps= 0 total=937 Number of alignments=65 # 1tx2A read from 1tx2A/merged-good-all-a2m # found chain 1tx2A in template set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0284)F62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0284 6 :HHELRAMFRAL 1tx2A 38 :SYNEVDAAVRH T0284 34 :ARIAADLGFECGILGGS 1tx2A 49 :AKEMRDEGAHIIDIGGE T0284 63 :ALITLSE 1tx2A 72 :AKVSVEE T0284 70 :FVEQATRIGRVARLPVIADADH 1tx2A 83 :VVPMIQAVSKEVKLPISIDTYK T0284 100 :MRTVVELERAGIAALT 1tx2A 105 :AEVAKQAIEAGAHIIN T0284 118 :DTLLPAQFG 1tx2A 121 :DIWGAKAEP T0284 140 :GKIRAALEA 1tx2A 130 :KIAEVAAHY T0284 153 :ALTIIARTNA 1tx2A 139 :DVPIILMHNR T0284 167 :VDAVIQRTLAYQEAGAD 1tx2A 161 :IADLYDSIKIAKDAGVR T0284 184 :GICLVGV 1tx2A 181 :IILDPGI T0284 191 :RDFAHLEAIAEHL 1tx2A 191 :KTPEQNLEAMRNL T0284 204 :HIPLMLVTY 1tx2A 210 :GYPVLLGTS T0284 213 :GNPQLRDDARLA 1tx2A 228 :DLPVEERLEGTG T0284 225 :RLGVRVVVNGH 1tx2A 247 :EKGCEFVRVHD T0284 242 :IKATYDCLREERG 1tx2A 258 :VKEMSRMAKMMDA Number of specific fragments extracted= 15 number of extra gaps= 0 total=952 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2mnr/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2mnr expands to /projects/compbio/data/pdb/2mnr.pdb.gz 2mnr:Warning: there is no chain 2mnr will retry with 2mnrA # T0284 read from 2mnr/merged-good-all-a2m # 2mnr read from 2mnr/merged-good-all-a2m # adding 2mnr to template set # found chain 2mnr in template set T0284 7 :HELRAMFRALLD 2mnr 60 :KSLKQLLDDMAA T0284 19 :SS 2mnr 74 :VN T0284 63 :ALITLSEFVEQATRIGRVARL 2mnr 76 :EPLAPVSLEAMLAKRFCLAGY T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 2mnr 133 :PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPA T0284 135 :VEEGVGKIRAALEAR 2mnr 172 :LDQDLAVVRSIRQAV T0284 151 :DPALTIIART 2mnr 187 :GDDFGIMVDY T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVGV 2mnr 197 :NQSLDVPAAIKRSQALQQEGVTWIEEPTL T0284 191 :RDFAHLEAIAEHLHIPLML 2mnr 227 :HDYEGHQRIQSKLNVPVQM T0284 214 :NPQLRDDARLARL 2mnr 246 :GENWLGPEEMFKA T0284 227 :GVRVVVNG 2mnr 262 :GACRLAMP T0284 237 :AYFAAIKATYDCLREE 2mnr 275 :GGVTGWIRASALAQQF Number of specific fragments extracted= 11 number of extra gaps= 0 total=963 Number of alignments=67 # 2mnr read from 2mnr/merged-good-all-a2m # found chain 2mnr in template set T0284 5 :SHHELRAMFRALLDSSRC 2mnr 79 :APVSLEAMLAKRFCLAGY T0284 31 :PMSARIAADL 2mnr 103 :AAAGIDMAAW T0284 50 :SVASLQ 2mnr 113 :DALGKV T0284 56 :VLA 2mnr 126 :LLG T0284 87 :ADADHGYGNALNVMRTVVELERAGIAALTIEDTLL 2mnr 136 :AYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYP T0284 134 :CVEEGVGKIRAALEA 2mnr 171 :ALDQDLAVVRSIRQA T0284 150 :VDPALTIIART 2mnr 186 :VGDDFGIMVDY T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVG 2mnr 197 :NQSLDVPAAIKRSQALQQEGVTWIEEPT T0284 190 :VRDFAHLEAIAEHLHIPLMLV 2mnr 226 :QHDYEGHQRIQSKLNVPVQMG T0284 215 :PQLRDDARLARL 2mnr 247 :ENWLGPEEMFKA T0284 227 :GVRVVVNGHA 2mnr 262 :GACRLAMPDA T0284 241 :AIKATYDCLREERGAVAS 2mnr 276 :GVTGWIRASALAQQFGIP Number of specific fragments extracted= 12 number of extra gaps= 0 total=975 Number of alignments=68 # 2mnr read from 2mnr/merged-good-all-a2m # found chain 2mnr in template set T0284 5 :SHHELRAMFRALLDSSRC 2mnr 79 :APVSLEAMLAKRFCLAGY T0284 30 :DPMSARIA 2mnr 97 :TGLIRMAA T0284 48 :GGSVASLQ 2mnr 105 :AGIDMAAW T0284 56 :VLAAP 2mnr 118 :VHETP T0284 77 :IGRVARL 2mnr 123 :LVKLLGA T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 2mnr 133 :PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPA T0284 135 :VEEGVGKIRAALEAR 2mnr 172 :LDQDLAVVRSIRQAV T0284 151 :DPALTIIARTN 2mnr 187 :GDDFGIMVDYN T0284 163 :ELIDVDAVIQRTLAYQEAGADGICLVGV 2mnr 198 :QSLDVPAAIKRSQALQQEGVTWIEEPTL T0284 191 :RDFAHLEAIAEHLHIPLMLVT 2mnr 227 :HDYEGHQRIQSKLNVPVQMGE T0284 216 :QLRDDARLARL 2mnr 248 :NWLGPEEMFKA T0284 227 :GVRVVVN 2mnr 263 :ACRLAMP T0284 234 :GHAAYFAAIKATY 2mnr 276 :GVTGWIRASALAQ T0284 251 :EE 2mnr 289 :QF Number of specific fragments extracted= 14 number of extra gaps= 0 total=989 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xg4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1xg4A/merged-good-all-a2m # 1xg4A read from 1xg4A/merged-good-all-a2m # found chain 1xg4A in training set Warning: unaligning (T0284)R280 because last residue in template chain is (1xg4A)N288 T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1xg4A 6 :PGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGR 1xg4A 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGH T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAEL 1xg4A 127 :PNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA T0284 165 :IDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1xg4A 165 :EGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1xg4A 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQ T0284 255 :AVASDLTASELSKKYTFPEEYQAWA 1xg4A 263 :VIDTMQTRNELYESINYYQYEEKLD Number of specific fragments extracted= 6 number of extra gaps= 0 total=995 Number of alignments=70 # 1xg4A read from 1xg4A/merged-good-all-a2m # found chain 1xg4A in training set Warning: unaligning (T0284)R280 because last residue in template chain is (1xg4A)N288 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1xg4A 5 :SPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGR 1xg4A 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGH T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELI 1xg4A 127 :PNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1xg4A 166 :GLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1xg4A 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQ T0284 259 :DLTASELSKKYTFPEEYQAWA 1xg4A 267 :MQTRNELYESINYYQYEEKLD Number of specific fragments extracted= 6 number of extra gaps= 0 total=1001 Number of alignments=71 # 1xg4A read from 1xg4A/merged-good-all-a2m # found chain 1xg4A in training set Warning: unaligning (T0284)K286 because last residue in template chain is (1xg4A)N288 T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1xg4A 6 :PGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTD 1xg4A 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNK T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1xg4A 131 :IVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1xg4A 166 :GLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEV 1xg4A 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEKLD Number of specific fragments extracted= 5 number of extra gaps= 0 total=1006 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ojxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ojxA expands to /projects/compbio/data/pdb/1ojx.pdb.gz 1ojxA:# T0284 read from 1ojxA/merged-good-all-a2m # 1ojxA read from 1ojxA/merged-good-all-a2m # adding 1ojxA to template set # found chain 1ojxA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPM 1ojxA 4 :LTEKFLRIFARRGKSIILAYDHGI T0284 33 :SARIAADLGFECGILG 1ojxA 46 :ILRLARDAGFDGVVFQ T0284 67 :LSEFVE 1ojxA 62 :RGIAEK T0284 80 :VA 1ojxA 68 :YY T0284 82 :RLPVIADAD 1ojxA 72 :SVPLILKLN T0284 91 :H 1ojxA 84 :T T0284 93 :YGN 1ojxA 86 :YNG T0284 103 :VVELERAGIAALTIE 1ojxA 98 :VEEAVSLGASAVGYT T0284 120 :L 1ojxA 115 :P T0284 126 :GRKS 1ojxA 116 :GSGF T0284 135 :VEEGVGKIRAALEAR 1ojxA 120 :EWKMFEELARIKRDA T0284 150 :VDPALTIIARTNAELID 1ojxA 137 :FDLPLVVWSYPRGGKVV T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 1ojxA 158 :PEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAG T0284 205 :IPLMLVTYGNPQ 1ojxA 197 :VPVLMSGGPKTK T0284 219 :DD 1ojxA 209 :TE T0284 221 :ARLARLGVRVVVNGHAAY 1ojxA 218 :EGVLEAGALGIAVGRNVW T0284 245 :TYDCLREERGAV 1ojxA 240 :ALKFARALAELV Number of specific fragments extracted= 17 number of extra gaps= 0 total=1023 Number of alignments=73 # 1ojxA read from 1ojxA/merged-good-all-a2m # found chain 1ojxA in template set Warning: unaligning (T0284)E8 because first residue in template chain is (1ojxA)N3 Warning: unaligning (T0284)A257 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ojxA)G253 Warning: unaligning (T0284)S258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ojxA)G253 T0284 9 :LRAMFRALLDSSRCYHTASVFDP 1ojxA 4 :LTEKFLRIFARRGKSIILAYDHG T0284 32 :MSARIAADLGFECGIL 1ojxA 45 :YILRLARDAGFDGVVF T0284 49 :GSVASLQ 1ojxA 61 :QRGIAEK T0284 80 :VARLPVIADA 1ojxA 70 :DGSVPLILKL T0284 90 :DHG 1ojxA 90 :PVS T0284 93 :YGNALNV 1ojxA 95 :NCSVEEA T0284 107 :ERAGIAALTIEDTLL 1ojxA 102 :VSLGASAVGYTIYPG T0284 125 :FGR 1ojxA 117 :SGF T0284 135 :VEEGVGKIRAALEA 1ojxA 120 :EWKMFEELARIKRD T0284 149 :RVDPALTIIARTNAELID 1ojxA 136 :KFDLPLVVWSYPRGGKVV T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 1ojxA 158 :PEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAG T0284 205 :IPLMLVTYGNPQLR 1ojxA 197 :VPVLMSGGPKTKTE T0284 219 :DDARLARLGVRVVVNGHAAY 1ojxA 216 :QVEGVLEAGALGIAVGRNVW T0284 245 :TYDCLREERGAV 1ojxA 240 :ALKFARALAELV Number of specific fragments extracted= 14 number of extra gaps= 1 total=1037 Number of alignments=74 # 1ojxA read from 1ojxA/merged-good-all-a2m # found chain 1ojxA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPM 1ojxA 4 :LTEKFLRIFARRGKSIILAYDHGI T0284 33 :SARIAADLGFECGILGGSVASLQ 1ojxA 46 :ILRLARDAGFDGVVFQRGIAEKY T0284 82 :RLPVIADA 1ojxA 72 :SVPLILKL T0284 94 :GN 1ojxA 88 :GE T0284 103 :VVELERAGIAALTIEDT 1ojxA 98 :VEEAVSLGASAVGYTIY T0284 123 :AQFGR 1ojxA 115 :PGSGF T0284 135 :VEEGVGKIRAALEAR 1ojxA 120 :EWKMFEELARIKRDA T0284 150 :VDPALTIIARTNAELI 1ojxA 137 :FDLPLVVWSYPRGGKV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 1ojxA 157 :APEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVA T0284 204 :HIPLMLVTYGNPQ 1ojxA 196 :KVPVLMSGGPKTK T0284 219 :DDARLAR 1ojxA 209 :TEEDFLK T0284 226 :LGVRVVVNGHAAY 1ojxA 223 :AGALGIAVGRNVW T0284 239 :FAAIKATYDCL 1ojxA 241 :LKFARALAELV Number of specific fragments extracted= 13 number of extra gaps= 0 total=1050 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aj2/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aj2 expands to /projects/compbio/data/pdb/1aj2.pdb.gz 1aj2:Warning: there is no chain 1aj2 will retry with 1aj2A # T0284 read from 1aj2/merged-good-all-a2m # 1aj2 read from 1aj2/merged-good-all-a2m # adding 1aj2 to template set # found chain 1aj2 in template set Warning: unaligning (T0284)V80 because of BadResidue code BAD_PEPTIDE in next template residue (1aj2)F89 Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE at template residue (1aj2)F89 T0284 21 :RCYHTASVFD 1aj2 16 :HVMGILNVTP T0284 31 :PMSARIAADLGFECGILGGSVA 1aj2 41 :VKHANLMINAGATIIDVGGEST T0284 59 :APDFALITLSE 1aj2 63 :RPGAAEVSVEE T0284 70 :FVEQATRIGR 1aj2 78 :VIPVVEAIAQ T0284 82 :RLPVIADAD 1aj2 90 :EVWISVDTS T0284 100 :MRTVVELERAGIAALTI 1aj2 100 :PEVIRESAKVGAHIIND T0284 135 :VEEGV 1aj2 117 :IRSLS T0284 140 :GKIRAALEA 1aj2 124 :GALEAAAET T0284 153 :ALTIIART 1aj2 133 :GLPVCLMH T0284 164 :L 1aj2 141 :M T0284 167 :VDAVIQRTLAYQEAGAD 1aj2 162 :NRYFIEQIARCEQAGIA T0284 184 :GICLV 1aj2 182 :LLLDP T0284 189 :GVRDFAHLEAIAEHLH 1aj2 190 :FGKNLSHNYSLLARLA T0284 205 :IPLMLVTY 1aj2 212 :LPLLVGMS T0284 213 :GNPQLRDD 1aj2 229 :NVGPSERL T0284 221 :ARLARLGVRVVVNGH 1aj2 244 :VIAAMQGAHIIRVHD T0284 242 :IKATYDCLREERGAVAS 1aj2 259 :VKETVEAMRVVEATLSA Number of specific fragments extracted= 17 number of extra gaps= 1 total=1067 Number of alignments=76 # 1aj2 read from 1aj2/merged-good-all-a2m # found chain 1aj2 in template set Warning: unaligning (T0284)V80 because of BadResidue code BAD_PEPTIDE in next template residue (1aj2)F89 Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE at template residue (1aj2)F89 T0284 22 :CYHTASVF 1aj2 17 :VMGILNVT T0284 30 :DPMSARIAADLGFECGILGGS 1aj2 40 :AVKHANLMINAGATIIDVGGE T0284 57 :LAAPDFALITLSE 1aj2 61 :STRPGAAEVSVEE T0284 70 :FVEQATRIGR 1aj2 78 :VIPVVEAIAQ T0284 82 :RLPVIADADH 1aj2 90 :EVWISVDTSK T0284 101 :RTVVELERAGIAAL 1aj2 101 :EVIRESAKVGAHII T0284 133 :ICVEEGV 1aj2 115 :NDIRSLS T0284 140 :GKIRAALEA 1aj2 124 :GALEAAAET T0284 153 :A 1aj2 133 :G T0284 154 :LTIIARTNAELID 1aj2 135 :PVCLMHMQGNPKT T0284 167 :VDAVIQRTLAYQEAGAD 1aj2 162 :NRYFIEQIARCEQAGIA T0284 184 :GICLVG 1aj2 182 :LLLDPG T0284 190 :VRDFAHLEAIAEHLH 1aj2 191 :GKNLSHNYSLLARLA T0284 205 :IPLMLVTY 1aj2 212 :LPLLVGMS T0284 213 :GNPQLRDDA 1aj2 229 :NVGPSERLS T0284 222 :RLARLGVRVVVNGH 1aj2 245 :IAAMQGAHIIRVHD T0284 242 :IKATYDCLREERGAVA 1aj2 259 :VKETVEAMRVVEATLS Number of specific fragments extracted= 17 number of extra gaps= 1 total=1084 Number of alignments=77 # 1aj2 read from 1aj2/merged-good-all-a2m # found chain 1aj2 in template set Warning: unaligning (T0284)V80 because of BadResidue code BAD_PEPTIDE in next template residue (1aj2)F89 Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE at template residue (1aj2)F89 T0284 18 :DSSRCYHTASVF 1aj2 13 :SHPHVMGILNVT T0284 30 :DPMSARIAADLGFECGILGGS 1aj2 40 :AVKHANLMINAGATIIDVGGE T0284 57 :LAAPDFALITLSE 1aj2 61 :STRPGAAEVSVEE T0284 70 :FVEQATRIGR 1aj2 78 :VIPVVEAIAQ T0284 82 :RLPVIADADH 1aj2 90 :EVWISVDTSK T0284 100 :MRTVVELERAGIAALT 1aj2 100 :PEVIRESAKVGAHIIN T0284 118 :DT 1aj2 116 :DI T0284 125 :FGRKSTD 1aj2 118 :RSLSEPG T0284 138 :GVGKIRAA 1aj2 125 :ALEAAAET T0284 149 :R 1aj2 133 :G T0284 152 :P 1aj2 134 :L T0284 154 :LTIIARTNAELI 1aj2 135 :PVCLMHMQGNPK T0284 167 :VDAVIQRTLAYQEAGAD 1aj2 162 :NRYFIEQIARCEQAGIA T0284 184 :GICLVGVRD 1aj2 182 :LLLDPGFGF T0284 193 :FAHLEAIAEHL 1aj2 194 :LSHNYSLLARL T0284 204 :HIPL 1aj2 211 :NLPL T0284 208 :MLVTYGNPQLRDDARLAR 1aj2 224 :IGQLLNVGPSERLSGSLA T0284 226 :LGVRVVVNGHA 1aj2 249 :QGAHIIRVHDV T0284 239 :FAAIKATYDCLREERGAV 1aj2 260 :KETVEAMRVVEATLSAKE Number of specific fragments extracted= 19 number of extra gaps= 1 total=1103 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1twdA/merged-good-all-a2m # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set Warning: unaligning (T0284)C22 because first residue in template chain is (1twdA)A2 T0284 23 :YHTASVFDPMSARIAADLGFECGIL 1twdA 3 :LLEICCYSMECALTAQQNGADRVEL T0284 57 :LAA 1twdA 28 :CAA T0284 60 :PDFALITLS 1twdA 33 :EGGLTPSLG T0284 73 :QATRIGRVARLPVIADAD 1twdA 42 :VLKSVRQRVTIPVHPIIR T0284 91 :HGYG 1twdA 65 :FCYS T0284 95 :NALNVMRTVVELERAGIAALTIE 1twdA 71 :EFAAILEDVRTVRELGFPGLVTG T0284 125 :FGRKSTDL 1twdA 94 :VLDVDGNV T0284 138 :GVGKIRAALEAR 1twdA 102 :DMPRMEKIMAAA T0284 153 :ALTIIARTNAEL 1twdA 115 :PLAVTFHRAFDM T0284 165 :IDVDAVIQR 1twdA 128 :ANPLYTLNN T0284 177 :YQEAGADGICLVGVRD 1twdA 137 :LAELGIARVLTSGQKS T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQ 1twdA 158 :LSKIMELIAHRDAPIIMAGAGVRA T0284 218 :RDDARLARLGVRVVVNG 1twdA 182 :ENLHHFLDAGVLEVHSS Number of specific fragments extracted= 13 number of extra gaps= 0 total=1116 Number of alignments=79 # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set T0284 23 :YHTASVFDPMSARIAADLGFECGILG 1twdA 3 :LLEICCYSMECALTAQQNGADRVELC T0284 57 :LAAPDFALITLS 1twdA 30 :APKEGGLTPSLG T0284 73 :QATRIGRVARLPVIADADH 1twdA 42 :VLKSVRQRVTIPVHPIIRP T0284 92 :G 1twdA 62 :G T0284 93 :YG 1twdA 67 :YS T0284 95 :NALNVMRTVVELERAGIAALTIE 1twdA 71 :EFAAILEDVRTVRELGFPGLVTG T0284 125 :FGRKSTDLI 1twdA 94 :VLDVDGNVD T0284 139 :VGKIRAALEAR 1twdA 103 :MPRMEKIMAAA T0284 152 :PALTIIARTNAELI 1twdA 114 :GPLAVTFHRAFDMC T0284 166 :DVDAVIQR 1twdA 129 :NPLYTLNN T0284 177 :YQEAGADGICLVGVRD 1twdA 137 :LAELGIARVLTSGQKS T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQL 1twdA 158 :LSKIMELIAHRDAPIIMAGAGVRAE T0284 219 :DDARLARLGVRVVVNG 1twdA 183 :NLHHFLDAGVLEVHSS Number of specific fragments extracted= 13 number of extra gaps= 0 total=1129 Number of alignments=80 # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set Warning: unaligning (T0284)C22 because first residue in template chain is (1twdA)A2 T0284 23 :YHTASVFDPMSARIAADLGFECGIL 1twdA 3 :LLEICCYSMECALTAQQNGADRVEL T0284 57 :LAAPDFALIT 1twdA 28 :CAAPKEGGLT T0284 71 :VEQATRIGRVARLPVIADA 1twdA 40 :LGVLKSVRQRVTIPVHPII T0284 90 :DHGYG 1twdA 64 :DFCYS T0284 95 :NALNVMRTVVELERAGIAALTIE 1twdA 71 :EFAAILEDVRTVRELGFPGLVTG T0284 120 :LLP 1twdA 94 :VLD T0284 128 :KSTDLI 1twdA 97 :VDGNVD T0284 139 :VGKIRAALEARV 1twdA 103 :MPRMEKIMAAAG T0284 152 :PALTIIARTNAELIDVDAVIQR 1twdA 115 :PLAVTFHRAFDMCANPLYTLNN T0284 177 :YQEAGADGICLVGVRD 1twdA 137 :LAELGIARVLTSGQKS T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1twdA 158 :LSKIMELIAHRDAPIIMAGAG T0284 215 :PQLRDDARLARLGVRVVVNG 1twdA 179 :VRAENLHHFLDAGVLEVHSS Number of specific fragments extracted= 12 number of extra gaps= 0 total=1141 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pe1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1pe1A/merged-good-all-a2m # 1pe1A read from 1pe1A/merged-good-all-a2m # found chain 1pe1A in training set T0284 21 :RCYHTASVFD 1pe1A 1003 :KFLVIAGPCA T0284 31 :PMSARIAADL 1pe1A 1020 :LKVGEEIKRL T0284 41 :GFECGILGGSVASLQ 1pe1A 1035 :EVEFVFKSSFDKANR T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1pe1A 1050 :SSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQ T0284 103 :VVELERA 1pe1A 1088 :AEPVAEV T0284 111 :IAALTIEDTL 1pe1A 1095 :ADIIQIPAFL T0284 125 :FGR 1pe1A 1105 :CRQ T0284 140 :GKIRAALEA 1pe1A 1109 :DLLLAAAKT T0284 153 :ALTIIARTNAELI 1pe1A 1118 :GRAVNVKKGQFLA T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFA 1pe1A 1201 :REFIFPLIRAAVAVGCDGVFMETHPEPE T0284 211 :TYGNPQLR 1pe1A 1229 :KALSDAST T0284 232 :VNGHAAYFAAIKATYDCLREERG 1pe1A 1237 :QLPLSQLEGIIEAILEIREVASK Number of specific fragments extracted= 12 number of extra gaps= 0 total=1153 Number of alignments=82 # 1pe1A read from 1pe1A/merged-good-all-a2m # found chain 1pe1A in training set T0284 21 :RCYHTASVFD 1pe1A 1003 :KFLVIAGPCA T0284 31 :PMSARIAADL 1pe1A 1017 :ELLLKVGEEI T0284 41 :GFECGILGGSVASLQ 1pe1A 1035 :EVEFVFKSSFDKANR T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1pe1A 1050 :SSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQ T0284 103 :VVELERA 1pe1A 1088 :AEPVAEV T0284 111 :IAALTIEDTL 1pe1A 1095 :ADIIQIPAFL T0284 125 :FG 1pe1A 1105 :CR T0284 140 :GKIRAALE 1pe1A 1109 :DLLLAAAK T0284 152 :PALTIIARTNAELI 1pe1A 1117 :TGRAVNVKKGQFLA T0284 166 :DVDAVIQRTLA 1pe1A 1133 :DTKNVVEKLKF T0284 180 :AGA 1pe1A 1144 :GGA T0284 183 :DGICLVG 1pe1A 1148 :EIYLTER T0284 190 :VR 1pe1A 1156 :TT T0284 192 :DFAHLEAIAEHLH 1pe1A 1166 :DFRSLPIMKQWAK T0284 207 :LMLVTY 1pe1A 1179 :VIYDAT T0284 214 :NPQLRDDARLARL 1pe1A 1199 :GMREFIFPLIRAA T0284 227 :GVRVVVN 1pe1A 1215 :GCDGVFM T0284 234 :GHAAYFAAIKATYDCLREERGAVAS 1pe1A 1239 :PLSQLEGIIEAILEIREVASKYYET Number of specific fragments extracted= 18 number of extra gaps= 0 total=1171 Number of alignments=83 # 1pe1A read from 1pe1A/merged-good-all-a2m # found chain 1pe1A in training set Warning: unaligning (T0284)R218 because last residue in template chain is (1pe1A)I1264 T0284 21 :RCYHTASVFD 1pe1A 1003 :KFLVIAGPCA T0284 31 :PMSARIAADL 1pe1A 1020 :LKVGEEIKRL T0284 41 :GFECGILGGSVASLQ 1pe1A 1035 :EVEFVFKSSFDKANR T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHG 1pe1A 1050 :SSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHES T0284 95 :NALNVM 1pe1A 1087 :QAEPVA T0284 101 :RTVVELERAGIAALTIEDTLLPAQF 1pe1A 1109 :DLLLAAAKTGRAVNVKKGQFLAPWD T0284 135 :VEEGVGKIRA 1pe1A 1134 :TKNVVEKLKF T0284 149 :RVDPALTIIAR 1pe1A 1144 :GGAKEIYLTER T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRD 1pe1A 1201 :REFIFPLIRAAVAVGCDGVFMETHPE T0284 193 :FAHLEAIAEHL 1pe1A 1244 :EGIIEAILEIR T0284 211 :TYGNPQL 1pe1A 1257 :ASKYYET Number of specific fragments extracted= 11 number of extra gaps= 0 total=1182 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1eyeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1eyeA/merged-good-all-a2m # 1eyeA read from 1eyeA/merged-good-all-a2m # found chain 1eyeA in training set Warning: unaligning (T0284)G49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1eyeA)E65 Warning: unaligning (T0284)S50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1eyeA)E65 T0284 21 :RCYHTASVFD 1eyeA 7 :QVMGVLNVTD T0284 31 :PMSARIAADLGFECGILG 1eyeA 32 :VKHGLAMAAAGAGIVDVG T0284 67 :LSEFVEQATRIGR 1eyeA 66 :TSRVIPVVKELAA T0284 81 :ARLPVIADAD 1eyeA 79 :QGITVSIDTM T0284 100 :MRTVVELERAGIAALTIEDTLLP 1eyeA 90 :ADVARAALQNGAQMVNDVSGGRA T0284 135 :VEEGVGKIRAA 1eyeA 113 :DPAMGPLLAEA T0284 153 :ALTIIAR 1eyeA 124 :DVPWVLM T0284 160 :TNAELI 1eyeA 132 :WRAVSA T0284 167 :VDAVIQRTLAYQE 1eyeA 150 :VAEVRADLLASVA T0284 180 :AGAD 1eyeA 167 :AGVD T0284 184 :GICLV 1eyeA 174 :LVLDP T0284 189 :GVRDFAHLEAIAEHLH 1eyeA 182 :FAKTAQHNWAILHALP T0284 205 :IPLMLVTYGN 1eyeA 204 :IPVLVGASRK T0284 220 :D 1eyeA 214 :R T0284 221 :ARLARLGVRVVVNGH 1eyeA 242 :ALAALHGAWGVRVHD T0284 242 :IKATYDCLREERGAVA 1eyeA 257 :VRASVDAIKVVEAWMG Number of specific fragments extracted= 16 number of extra gaps= 1 total=1198 Number of alignments=85 # 1eyeA read from 1eyeA/merged-good-all-a2m # found chain 1eyeA in training set Warning: unaligning (T0284)G49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1eyeA)E65 Warning: unaligning (T0284)S50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1eyeA)E65 T0284 22 :CYHTASVFD 1eyeA 8 :VMGVLNVTD T0284 31 :PMSARIAADLGFECGILG 1eyeA 32 :VKHGLAMAAAGAGIVDVG T0284 67 :LSEFVEQATRIGR 1eyeA 66 :TSRVIPVVKELAA T0284 81 :ARLPVIADADH 1eyeA 79 :QGITVSIDTMR T0284 100 :MRTVVELERAGIAALTIEDTLLP 1eyeA 90 :ADVARAALQNGAQMVNDVSGGRA T0284 135 :VEEGVGKIRAA 1eyeA 113 :DPAMGPLLAEA T0284 153 :A 1eyeA 124 :D T0284 154 :LTIIARTNAELI 1eyeA 126 :PWVLMHWRAVSA T0284 167 :VDAVIQRTLA 1eyeA 150 :VAEVRADLLA T0284 177 :YQEAGAD 1eyeA 164 :AVAAGVD T0284 184 :GICLVG 1eyeA 174 :LVLDPG T0284 190 :VRDFAHLEAIAEHLH 1eyeA 183 :AKTAQHNWAILHALP T0284 205 :IPLMLVTYGN 1eyeA 204 :IPVLVGASRK T0284 222 :RLARLGVRVVVNGH 1eyeA 243 :LAALHGAWGVRVHD T0284 242 :IKATYDCLREERGAVAS 1eyeA 257 :VRASVDAIKVVEAWMGA Number of specific fragments extracted= 15 number of extra gaps= 1 total=1213 Number of alignments=86 # 1eyeA read from 1eyeA/merged-good-all-a2m # found chain 1eyeA in training set Warning: unaligning (T0284)G49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1eyeA)E65 Warning: unaligning (T0284)S50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1eyeA)E65 Warning: unaligning (T0284)D259 because last residue in template chain is (1eyeA)E274 T0284 22 :CYHTASVFD 1eyeA 8 :VMGVLNVTD T0284 31 :PMSARIAADLGFECGILG 1eyeA 32 :VKHGLAMAAAGAGIVDVG T0284 67 :LSEFVEQATRIGRV 1eyeA 66 :TSRVIPVVKELAAQ T0284 82 :RL 1eyeA 80 :GI T0284 84 :PVIADADHGYGN 1eyeA 102 :QMVNDVSGGRAD T0284 102 :TVVELERAGIAALTIEDTLLPAQFGRKSTD 1eyeA 116 :MGPLLAEADVPWVLMHWRAVSADTPHVPVR T0284 132 :LICVEEGVGKIRAAL 1eyeA 147 :GNVVAEVRADLLASV T0284 147 :EARVDPALTIIARTNAELI 1eyeA 166 :AAGVDPARLVLDPGLGFAK T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1eyeA 188 :HNWAILHALPELVATGIPVLVGASRKR T0284 193 :FAHLEAIAE 1eyeA 234 :DTATAVISA T0284 222 :RLARLGVRVVVNGH 1eyeA 243 :LAALHGAWGVRVHD T0284 242 :IKATYDCLREERGAVAS 1eyeA 257 :VRASVDAIKVVEAWMGA Number of specific fragments extracted= 12 number of extra gaps= 1 total=1225 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a53/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a53 expands to /projects/compbio/data/pdb/1a53.pdb.gz 1a53:Warning: there is no chain 1a53 will retry with 1a53A # T0284 read from 1a53/merged-good-all-a2m # 1a53 read from 1a53/merged-good-all-a2m # adding 1a53 to template set # found chain 1a53 in template set T0284 8 :ELRAMFRALLDSSRCYHTASVFD 1a53 32 :SLNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1a53 67 :IEYSKFMERY T0284 42 :FECGIL 1a53 77 :AVGLSI T0284 57 :LAAPDFALITLSEF 1a53 83 :LTEEKYFNGSYETL T0284 75 :TRIGRVARLPVIADADH 1a53 97 :RKIASSVSIPILMKDFI T0284 100 :MRTVVELERAGIAALTIEDTLLPA 1a53 116 :ESQIDDAYNLGADTVLLIVKILTE T0284 136 :EEGVGKIRAALEARV 1a53 140 :RELESLLEYARSYGM T0284 153 :ALTIIART 1a53 155 :EPLIEIND T0284 168 :DAVIQRTLA 1a53 163 :ENDLDIALR T0284 180 :AGADGICLVGV 1a53 172 :IGARFIGINSR T0284 191 :RDFAHLEAIAEHLH 1a53 189 :INKENQRKLISMIP T0284 205 :I 1a53 205 :V T0284 207 :LMLVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1a53 206 :VKVAESGISERNEIEELRKLGVNAFLIGSSLMR Number of specific fragments extracted= 13 number of extra gaps= 0 total=1238 Number of alignments=88 # 1a53 read from 1a53/merged-good-all-a2m # found chain 1a53 in template set T0284 3 :RASHHELRAMFRALLDSSRCYHTASVFD 1a53 27 :QRPIISLNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1a53 67 :IEYSKFMERY T0284 42 :FECGIL 1a53 77 :AVGLSI T0284 57 :LAAPDFALITLSE 1a53 83 :LTEEKYFNGSYET T0284 74 :ATRIGRVARLPVIADADH 1a53 96 :LRKIASSVSIPILMKDFI T0284 100 :MRTVVELERAGIAALTIEDTLLPA 1a53 116 :ESQIDDAYNLGADTVLLIVKILTE T0284 140 :GKIRAALEARVDPA 1a53 140 :RELESLLEYARSYG T0284 154 :LTIIART 1a53 156 :PLIEIND T0284 168 :DAVIQRTL 1a53 163 :ENDLDIAL T0284 179 :EAGADGICLVGVR 1a53 171 :RIGARFIGINSRD T0284 192 :DFAHLEAIAEHLH 1a53 190 :NKENQRKLISMIP T0284 205 :I 1a53 205 :V T0284 207 :LMLVTYGNPQLRDDARLARLGVRVVVNGHAAYF 1a53 206 :VKVAESGISERNEIEELRKLGVNAFLIGSSLMR Number of specific fragments extracted= 13 number of extra gaps= 0 total=1251 Number of alignments=89 # 1a53 read from 1a53/merged-good-all-a2m # found chain 1a53 in template set T0284 9 :LRAMFRALLDSSRCYHTASVFD 1a53 33 :LNERILEFNKRNITAIIAEYKR T0284 31 :PMSARIAADL 1a53 67 :IEYSKFMERY T0284 42 :FECGIL 1a53 77 :AVGLSI T0284 57 :LAAPDFALITL 1a53 83 :LTEEKYFNGSY T0284 72 :EQATRIGRVARLPVIADA 1a53 94 :ETLRKIASSVSIPILMKD T0284 100 :MRTVVELERAGIAALTIEDTLLP 1a53 116 :ESQIDDAYNLGADTVLLIVKILT T0284 135 :VEEGVGKIRAALEARV 1a53 139 :ERELESLLEYARSYGM T0284 153 :ALTIIAR 1a53 155 :EPLIEIN T0284 167 :VDAVIQ 1a53 162 :DENDLD T0284 176 :AYQEAGADGICLVGVRD 1a53 168 :IALRIGARFIGINSRDL T0284 193 :FAHLEAIAEHLHI 1a53 191 :KENQRKLISMIPS T0284 206 :PLMLVTYG 1a53 205 :VVKVAESG T0284 217 :LRDDARLAR 1a53 213 :ISERNEIEE T0284 226 :LGVRVVVNGHAAYF 1a53 225 :LGVNAFLIGSSLMR Number of specific fragments extracted= 14 number of extra gaps= 0 total=1265 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w5nA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1w5nA/merged-good-all-a2m # 1w5nA read from 1w5nA/merged-good-all-a2m # found chain 1w5nA in training set Warning: unaligning (T0284)E117 because of BadResidue code BAD_PEPTIDE in next template residue (1w5nA)D176 Warning: unaligning (T0284)D118 because of BadResidue code BAD_PEPTIDE at template residue (1w5nA)D176 T0284 31 :PMSARIAADLGFECGILG 1w5nA 69 :LIEAEEWVALGIPALALF T0284 56 :VLAAPDFALIT 1w5nA 93 :KKSLDAAEAYN T0284 69 :EFVEQATRIGRVA 1w5nA 107 :IAQRATRALRERF T0284 82 :RLPVIADADHG 1w5nA 121 :ELGIITDVALC T0284 93 :YGN 1w5nA 133 :FTT T0284 96 :ALNVMRTVVELERAGIAALTI 1w5nA 154 :IDVLVRQALSHAEAGAQVVAP T0284 119 :TL 1w5nA 177 :MM T0284 140 :GKIRAALEAR 1w5nA 180 :GRIGAIREAL T0284 150 :VDPALTIIA 1w5nA 193 :GHTNVRVMA T0284 159 :RTNAELI 1w5nA 205 :KYASAYY T0284 166 :DVDAVIQRTLAYQEAGADGICLV 1w5nA 238 :NSDEALHEVAADLAEGADMVMVK T0284 189 :GVRDFAHLEAIAEHLHIPLMLVTY 1w5nA 262 :GMPYLDIVRRVKDEFRAPTFVYQV T0284 219 :DD 1w5nA 286 :SG T0284 221 :ARLARLGVRVVVNGHA 1w5nA 311 :TAFKRAGADGILTYFA T0284 243 :KATYDCLR 1w5nA 327 :KQAAEQLR Number of specific fragments extracted= 15 number of extra gaps= 1 total=1280 Number of alignments=91 # 1w5nA read from 1w5nA/merged-good-all-a2m # found chain 1w5nA in training set Warning: unaligning (T0284)E117 because of BadResidue code BAD_PEPTIDE in next template residue (1w5nA)D176 Warning: unaligning (T0284)D118 because of BadResidue code BAD_PEPTIDE at template residue (1w5nA)D176 T0284 10 :RAMFRALLDS 1w5nA 65 :IDQLLIEAEE T0284 37 :AADLGFECGILG 1w5nA 75 :WVALGIPALALF T0284 56 :VLAAPDF 1w5nA 100 :EAYNPEG T0284 69 :EFVEQATRIGR 1w5nA 107 :IAQRATRALRE T0284 80 :VARLPVIADADHG 1w5nA 119 :FPELGIITDVALC T0284 93 :YGN 1w5nA 133 :FTT T0284 96 :ALNVMRTVVELERAGIAALTI 1w5nA 154 :IDVLVRQALSHAEAGAQVVAP T0284 119 :TL 1w5nA 177 :MM T0284 136 :EEGVGKIRAALEARVDPALTIIA 1w5nA 179 :DGRIGAIREALESAGHTNVRVMA T0284 159 :RTNAELIDV 1w5nA 205 :KYASAYYGP T0284 168 :DAVIQRTLAYQEAGADGICLVG 1w5nA 240 :DEALHEVAADLAEGADMVMVKP T0284 190 :VRDFAHLEAIAEHLHIPLMLVTY 1w5nA 263 :MPYLDIVRRVKDEFRAPTFVYQV T0284 217 :LRDDA 1w5nA 286 :SGEYA T0284 222 :RLARLGVRVVVNGH 1w5nA 312 :AFKRAGADGILTYF T0284 245 :TYDCLREER 1w5nA 326 :AKQAAEQLR Number of specific fragments extracted= 15 number of extra gaps= 1 total=1295 Number of alignments=92 # 1w5nA read from 1w5nA/merged-good-all-a2m # found chain 1w5nA in training set Warning: unaligning (T0284)E117 because of BadResidue code BAD_PEPTIDE in next template residue (1w5nA)D176 Warning: unaligning (T0284)D118 because of BadResidue code BAD_PEPTIDE at template residue (1w5nA)D176 T0284 31 :PMSARIAADLGFECGILGGSV 1w5nA 69 :LIEAEEWVALGIPALALFPVT T0284 56 :VLAAPDFALITLS 1w5nA 93 :KKSLDAAEAYNPE T0284 69 :EFVEQATRIGRVA 1w5nA 107 :IAQRATRALRERF T0284 82 :RLPVIADA 1w5nA 121 :ELGIITDV T0284 90 :DHGYG 1w5nA 144 :DDGYV T0284 95 :NALNVMRTVVELERAGIAALTI 1w5nA 153 :SIDVLVRQALSHAEAGAQVVAP T0284 119 :TLLP 1w5nA 177 :MMDG T0284 138 :GVGKIRAALEARVDPALTIIARTNAELI 1w5nA 181 :RIGAIREALESAGHTNVRVMAYSAKYAS T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRD 1w5nA 239 :SDEALHEVAADLAEGADMVMVKPGMP T0284 193 :FAHLEAIAEHLHIPLMLVTY 1w5nA 266 :LDIVRRVKDEFRAPTFVYQV T0284 213 :GNPQLR 1w5nA 299 :GWLAES T0284 220 :DARLARLGVRVVVNGHAAYFA 1w5nA 310 :LTAFKRAGADGILTYFAKQAA Number of specific fragments extracted= 12 number of extra gaps= 1 total=1307 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ps9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ps9A expands to /projects/compbio/data/pdb/1ps9.pdb.gz 1ps9A:# T0284 read from 1ps9A/merged-good-all-a2m # 1ps9A read from 1ps9A/merged-good-all-a2m # adding 1ps9A to template set # found chain 1ps9A in template set T0284 24 :HTASVFD 1ps9A 20 :VLMGSMH T0284 31 :PMSARIAADLGFECGILGGSVASLQVLAAPDFALIT 1ps9A 40 :AAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLN T0284 67 :LSEFVEQATRIGRVARLPVIADADHG 1ps9A 80 :IPHHRTITEAVHQEGGKIALQILHTG T0284 93 :YG 1ps9A 109 :YQ T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1ps9A 140 :IDNFARCAQLAREAGYDGVEVMGSE T0284 121 :LPAQFG 1ps9A 179 :RSDQWG T0284 136 :EEGVGKIRAALEAR 1ps9A 185 :GDYRNRMRFAVEVV T0284 150 :VDPALTIIAR 1ps9A 205 :VGNDFIIIYR T0284 160 :TNAELIDVDAVIQRTLAYQEAGADGICLV 1ps9A 220 :LVEDGGTFAETVELAQAIEAAGATIINTG T0284 189 :GV 1ps9A 250 :GW T0284 193 :FAHLEAIAEHLHIPL 1ps9A 269 :SWVTRKLKGHVSLPL T0284 210 :VTYGNP 1ps9A 284 :VTTNRI T0284 218 :RDDARLARL 1ps9A 290 :NDPQVADDI T0284 227 :GVRVVVNGHAAYFA 1ps9A 303 :DADMVSMARPFLAD T0284 246 :YDCLREER 1ps9A 317 :AELLSKAQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=1322 Number of alignments=94 # 1ps9A read from 1ps9A/merged-good-all-a2m # found chain 1ps9A in template set T0284 22 :CYHTASVFD 1ps9A 19 :RVLMGSMHT T0284 31 :PMSARIAADLGFECGILGGSVASLQVLAAPDFALIT 1ps9A 40 :AAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLN T0284 67 :LSEFVEQATRIGRVARLPVIADADHG 1ps9A 80 :IPHHRTITEAVHQEGGKIALQILHTG T0284 93 :YG 1ps9A 107 :YS T0284 96 :ALNVMRTVVELERAGIAALTIEDTLL 1ps9A 140 :IDNFARCAQLAREAGYDGVEVMGSEG T0284 122 :PAQFG 1ps9A 180 :SDQWG T0284 136 :EEGVGKIRAALEA 1ps9A 185 :GDYRNRMRFAVEV T0284 149 :RVDPALTIIAR 1ps9A 204 :RVGNDFIIIYR T0284 160 :TNAELIDVDAVIQRTLAYQEAGADGICLVGVR 1ps9A 220 :LVEDGGTFAETVELAQAIEAAGATIINTGIGW T0284 194 :AHLEAIAEHLHIPLMLV 1ps9A 270 :WVTRKLKGHVSLPLVTT T0284 215 :PQLRDDARLARL 1ps9A 287 :NRINDPQVADDI T0284 227 :G 1ps9A 302 :G T0284 228 :VRVVVNGHAAYF 1ps9A 304 :ADMVSMARPFLA T0284 247 :DCLREERGAVAS 1ps9A 318 :ELLSKAQSGRAD Number of specific fragments extracted= 14 number of extra gaps= 0 total=1336 Number of alignments=95 # 1ps9A read from 1ps9A/merged-good-all-a2m # found chain 1ps9A in template set T0284 23 :YHTASVFD 1ps9A 20 :VLMGSMHT T0284 31 :PMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVA 1ps9A 40 :AAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAV T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1ps9A 140 :IDNFARCAQLAREAGYDGVEVMGSE T0284 121 :LPAQFGRKST 1ps9A 177 :NQRSDQWGGD T0284 135 :VEEGVGKIRAALEAR 1ps9A 191 :MRFAVEVVRAVRERV T0284 151 :DPALTIIARTNAELI 1ps9A 206 :GNDFIIIYRLSMLDL T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1ps9A 226 :TFAETVELAQAIEAAGATIINTGIGWH T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1ps9A 269 :SWVTRKLKGHVSLPLVTTNRI T0284 218 :RDDARLARL 1ps9A 290 :NDPQVADDI T0284 227 :GVRVVVNGHAAYF 1ps9A 303 :DADMVSMARPFLA T0284 247 :DCLREERGA 1ps9A 318 :ELLSKAQSG Number of specific fragments extracted= 11 number of extra gaps= 0 total=1347 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v93A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v93A expands to /projects/compbio/data/pdb/1v93.pdb.gz 1v93A:# T0284 read from 1v93A/merged-good-all-a2m # 1v93A read from 1v93A/merged-good-all-a2m # adding 1v93A to template set # found chain 1v93A in template set T0284 13 :FRALLDS 1v93A 3 :IRDLLKA T0284 20 :SRCYHTASVFD 1v93A 11 :RGPLFSFEFFP T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1v93A 32 :FRTLEELKAFRPAFVSITYGAMGST T0284 67 :LSEFVEQATRIGR 1v93A 57 :RERSVAWAQRIQS T0284 81 :ARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQ 1v93A 70 :LGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRG T0284 126 :GR 1v93A 118 :RP T0284 128 :KST 1v93A 121 :PEG T0284 135 :VEEGVGKIRAALEARV 1v93A 124 :FRYAAELVALIRERYG T0284 152 :PALTIIARTNAELID 1v93A 140 :DRVSVGGAAYPEGHP T0284 167 :VDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLH 1v93A 159 :LEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERAR T0284 205 :IPLMLVTY 1v93A 202 :IPILPGIM T0284 216 :QLRDD 1v93A 210 :PVTSY T0284 221 :ARLARLGVRVVVN 1v93A 259 :AELLEAGVEGVHF T0284 234 :GHAAYFAAIKA 1v93A 276 :KSPATRMVLER Number of specific fragments extracted= 14 number of extra gaps= 0 total=1361 Number of alignments=97 # 1v93A read from 1v93A/merged-good-all-a2m # found chain 1v93A in template set T0284 13 :FRALLDS 1v93A 3 :IRDLLKA T0284 20 :SRCYHTASVFD 1v93A 11 :RGPLFSFEFFP T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1v93A 32 :FRTLEELKAFRPAFVSITYGAMGST T0284 67 :LSEFVEQATRIGRV 1v93A 57 :RERSVAWAQRIQSL T0284 82 :RLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPA 1v93A 71 :GLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPR T0284 126 :GRKSTDLI 1v93A 113 :GERVFRPH T0284 135 :VEEGVGKIRAALEAR 1v93A 124 :FRYAAELVALIRERY T0284 151 :DPALTIIARTNAELI 1v93A 139 :GDRVSVGGAAYPEGH T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 1v93A 158 :SLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERA T0284 204 :HIPLMLVTYGNPQLRDDA 1v93A 201 :GIPILPGIMPVTSYRQLR T0284 222 :RLARLGVRVVVN 1v93A 260 :ELLEAGVEGVHF T0284 234 :GH 1v93A 273 :TL T0284 243 :KATYDCLR 1v93A 278 :PATRMVLE Number of specific fragments extracted= 13 number of extra gaps= 0 total=1374 Number of alignments=98 # 1v93A read from 1v93A/merged-good-all-a2m # found chain 1v93A in template set T0284 13 :FRALLDS 1v93A 3 :IRDLLKA T0284 20 :SRCYHTASVFD 1v93A 11 :RGPLFSFEFFP T0284 31 :PMSARIAADLGFECGILGGS 1v93A 32 :FRTLEELKAFRPAFVSITYG T0284 60 :PDFAL 1v93A 52 :AMGST T0284 67 :LSEFVEQATRIGRVARLPVIADADHG 1v93A 57 :RERSVAWAQRIQSLGLNPLAHLTVAG T0284 94 :GNALNVMRTVVELERAGIAALTIEDTLLP 1v93A 83 :QSRKEVAEVLHRFVESGVENLLALRGDPP T0284 123 :AQFGRKSTDLICVEEGVGKIR 1v93A 115 :RVFRPHPEGFRYAAELVALIR T0284 147 :E 1v93A 136 :E T0284 149 :RVDPALTIIARTNAELI 1v93A 137 :RYGDRVSVGGAAYPEGH T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 1v93A 158 :SLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERA T0284 204 :HIPLMLVTYG 1v93A 201 :GIPILPGIMP T0284 217 :LRDDARLARL 1v93A 211 :VTSYRQLRRF T0284 250 :REERGAVASDLTASELSKKYTFPEEYQAWARDY 1v93A 221 :TEVCGASIPGPLLAKLERHQDDPKAVLEIGVEH Number of specific fragments extracted= 13 number of extra gaps= 0 total=1387 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nvmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1nvmA/merged-good-all-a2m # 1nvmA read from 1nvmA/merged-good-all-a2m # found chain 1nvmA in training set T0284 22 :CYHTASVFDPMSA 1nvmA 10 :YISDVTLRDGSHA T0284 35 :RIAADLGFECGILG 1nvmA 37 :RALDKAKVDSIEVA T0284 49 :GSVASLQ 1nvmA 52 :GDGLQGS T0284 56 :VLAAPDF 1nvmA 61 :NYGFGRH T0284 69 :EFVEQATRIGRVA 1nvmA 68 :TDLEYIEAVAGEI T0284 82 :RLPVIADADHGYGNALNV 1nvmA 82 :HAQIATLLLPGIGSVHDL T0284 104 :VELERAGIAALTIEDT 1nvmA 100 :KNAYQAGARVVRVATH T0284 132 :LICVEEGVGKIRAALEA 1nvmA 116 :CTEADVSKQHIEYARNL T0284 153 :ALTIIA 1nvmA 133 :GMDTVG T0284 159 :RTNAELIDVDAVIQRTLAYQEAGADGICLV 1nvmA 140 :LMMSHMIPAEKLAEQGKLMESYGATCIYMA T0284 189 :GVRDFAHLEAIAEHLH 1nvmA 173 :GAMSMNDIRDRMRAFK T0284 205 :IPL 1nvmA 195 :TQV T0284 210 :VTYGNPQLRDD 1nvmA 198 :GMHAHHNLSLG T0284 221 :ARLARLGVRVVVNG 1nvmA 213 :IVAVEEGCDRVDAS T0284 235 :HAAYFAAIKATYDC 1nvmA 236 :NAPLEVFIAVAERL T0284 249 :LREERGAVASDL 1nvmA 257 :LYTLMDAADDIV Number of specific fragments extracted= 16 number of extra gaps= 0 total=1403 Number of alignments=100 # 1nvmA read from 1nvmA/merged-good-all-a2m # found chain 1nvmA in training set T0284 22 :CYHTASVFDPMSA 1nvmA 10 :YISDVTLRDGSHA T0284 35 :RIAADLGFECGILG 1nvmA 37 :RALDKAKVDSIEVA T0284 49 :GSVA 1nvmA 52 :GDGL T0284 57 :LAAPDFALITLSEFVEQATRIGR 1nvmA 56 :QGSSFNYGFGRHTDLEYIEAVAG T0284 80 :VARLPVIADADHGYGNALN 1nvmA 80 :ISHAQIATLLLPGIGSVHD T0284 103 :VVELERAGIAALTIEDTL 1nvmA 99 :LKNAYQAGARVVRVATHC T0284 133 :ICVEEGVGKIRAALEA 1nvmA 117 :TEADVSKQHIEYARNL T0284 153 :ALTIIA 1nvmA 133 :GMDTVG T0284 159 :RTNAELIDVDAVIQRTLAYQEAGADGICLVG 1nvmA 140 :LMMSHMIPAEKLAEQGKLMESYGATCIYMAD T0284 190 :VRDFAHLEAIAEHLH 1nvmA 174 :AMSMNDIRDRMRAFK T0284 205 :IP 1nvmA 195 :TQ T0284 208 :MLVTYGNPQLRDDA 1nvmA 197 :VGMHAHHNLSLGVA T0284 222 :RLARLGVRVVVNGHAA 1nvmA 214 :VAVEEGCDRVDASLAG T0284 245 :TYDCLREERGAVAS 1nvmA 239 :LEVFIAVAERLGWN T0284 259 :DLTASELSKKYT 1nvmA 254 :GTDLYTLMDAAD Number of specific fragments extracted= 15 number of extra gaps= 0 total=1418 Number of alignments=101 # 1nvmA read from 1nvmA/merged-good-all-a2m # found chain 1nvmA in training set T0284 4 :ASHHELRAMFRALLDSSRCYHTA 1nvmA 67 :HTDLEYIEAVAGEISHAQIATLL T0284 27 :SVFDPMSARIAADLGFECGILGG 1nvmA 92 :GIGSVHDLKNAYQAGARVVRVAT T0284 63 :ALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDT 1nvmA 115 :HCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADS T0284 130 :TDLICVEEGVGKIRAALEARVDPALTIIARTNAELI 1nvmA 172 :GGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSL T0284 171 :IQRTLAYQEAGADGICLVGVRD 1nvmA 209 :VANSIVAVEEGCDRVDASLAGM T0284 193 :FAHLEAIAEHL 1nvmA 257 :LYTLMDAADDI T0284 214 :NPQLRDDARLARLGVR 1nvmA 273 :DRPVRVDRETLGLGYA T0284 232 :VNGHAAYFAAIKATYDC 1nvmA 289 :GVYSSFLRHAEIAAAKY T0284 255 :AVASDLTASELSKKYTFPEEYQAWARDYMEV 1nvmA 306 :NLKTLDILVELGHRRMVGGQEDMIVDVALDL Number of specific fragments extracted= 9 number of extra gaps= 0 total=1427 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1igwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1igwA expands to /projects/compbio/data/pdb/1igw.pdb.gz 1igwA:# T0284 read from 1igwA/merged-good-all-a2m # 1igwA read from 1igwA/merged-good-all-a2m # adding 1igwA to template set # found chain 1igwA in template set Warning: unaligning (T0284)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)G200 Warning: unaligning (T0284)G126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)G200 Warning: unaligning (T0284)N214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)S335 Warning: unaligning (T0284)P215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)S335 T0284 7 :HELRAMFRALLDSS 1igwA 47 :QLGAAKMWRLLHGE T0284 21 :RCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1igwA 64 :GYINSLGALTGGQALQQAKAGIEAVYLSGWQVAAD T0284 57 :LA 1igwA 101 :LA T0284 59 :APDFALITLSEFVEQATRIGR 1igwA 106 :YPDQSLYPANSVPAVVERINN T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLL 1igwA 153 :PIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLA T0284 122 :PAQ 1igwA 192 :VKK T0284 130 :TDLICVEEGVGKIRAALEAR 1igwA 201 :KVLVPTQEAIQKLVAARLCA T0284 150 :VDPALTIIARTNAELI 1igwA 223 :TGVPTLLVARTDADAA T0284 166 :DVDAVIQRTLAYQEA 1igwA 268 :GIEQAISRGLAYAPY T0284 182 :ADGICLV 1igwA 283 :ADLVWCE T0284 189 :GVRDFAHLEAIAEHLH 1igwA 291 :STPDLELARRFAQAIH T0284 205 :IPLMLVTYG 1igwA 309 :YPGKLLAYN T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1igwA 338 :QQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQ T0284 255 :AVASDLTASELSKKYTFPEE 1igwA 383 :QQPEFAAAKDGYTFVSHQQE T0284 275 :YQAWARDYMEVKE 1igwA 405 :TGYFDKVTTIIQG Number of specific fragments extracted= 15 number of extra gaps= 2 total=1442 Number of alignments=103 # 1igwA read from 1igwA/merged-good-all-a2m # found chain 1igwA in template set Warning: unaligning (T0284)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)G200 Warning: unaligning (T0284)G126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)G200 Warning: unaligning (T0284)N214 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)S335 Warning: unaligning (T0284)P215 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)S335 T0284 1 :MHRASHHELRAMFRALLDSS 1igwA 41 :PECTLAQLGAAKMWRLLHGE T0284 21 :RCYHTASVFDPMSARIAADLGFECGILGGSVASL 1igwA 64 :GYINSLGALTGGQALQQAKAGIEAVYLSGWQVAA T0284 55 :QVLA 1igwA 99 :ANLA T0284 59 :APDFALITLSEFVEQATRIGRVAR 1igwA 106 :YPDQSLYPANSVPAVVERINNTFR T0284 83 :LPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1igwA 152 :LPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLAS T0284 123 :AQ 1igwA 193 :KK T0284 130 :TDLICVEEGVGKIRAALEA 1igwA 201 :KVLVPTQEAIQKLVAARLC T0284 149 :RVDPALTIIARTNAELIDV 1igwA 222 :VTGVPTLLVARTDADAADL T0284 168 :DAVIQRTLAYQEA 1igwA 270 :EQAISRGLAYAPY T0284 182 :ADGICLVG 1igwA 283 :ADLVWCET T0284 190 :VRDFAHLEAIAEHL 1igwA 292 :TPDLELARRFAQAI T0284 204 :H 1igwA 311 :G T0284 208 :MLVTYG 1igwA 312 :KLLAYN T0284 222 :RLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1igwA 339 :QLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQ T0284 260 :LTASELSKKY 1igwA 372 :GEGMKHYVEK T0284 274 :EYQAWARDYME 1igwA 382 :VQQPEFAAAKD Number of specific fragments extracted= 16 number of extra gaps= 2 total=1458 Number of alignments=104 # 1igwA read from 1igwA/merged-good-all-a2m # found chain 1igwA in template set Warning: unaligning (T0284)F125 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)G200 Warning: unaligning (T0284)G126 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)G200 Warning: unaligning (T0284)T211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1igwA)S335 Warning: unaligning (T0284)Y212 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1igwA)S335 T0284 2 :HRASHHELRAMFRALLDSS 1igwA 42 :ECTLAQLGAAKMWRLLHGE T0284 21 :RCYHTASVFDPMSARIAADLGFECGILGGSVASLQV 1igwA 64 :GYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADA T0284 57 :LAAPDFALITLSEFVEQATRIGRVARL 1igwA 104 :SMYPDQSLYPANSVPAVVERINNTFRR T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1igwA 153 :PIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLAS T0284 123 :AQ 1igwA 193 :KK T0284 131 :D 1igwA 201 :K T0284 132 :LICVEEGVGKIRAAL 1igwA 203 :LVPTQEAIQKLVAAR T0284 147 :EARVDPALTIIARTNAELI 1igwA 220 :ADVTGVPTLLVARTDADAA T0284 167 :VDAVIQRTLAYQE 1igwA 269 :IEQAISRGLAYAP T0284 182 :ADGICLVGVRD 1igwA 283 :ADLVWCETSTP T0284 193 :FAHLEAIAEHL 1igwA 295 :LELARRFAQAI T0284 204 :HIPLMLV 1igwA 311 :GKLLAYN T0284 219 :DDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYT 1igwA 336 :FQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEF T0284 281 :DY 1igwA 388 :AA Number of specific fragments extracted= 14 number of extra gaps= 2 total=1472 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xi3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1xi3A/merged-good-all-a2m # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0284)G94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xi3A)R70 Warning: unaligning (T0284)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xi3A)R70 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE in next template residue (1xi3A)S128 Warning: unaligning (T0284)D192 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xi3A)D137 T0284 21 :RCYHTAS 1xi3A 8 :KLYVITD T0284 29 :FDPMSARIAADLGFECGILG 1xi3A 19 :PEVESVREALEGGATAIQMR T0284 62 :FALITLSEFVEQATRIGRVA 1xi3A 39 :IKNAPTREMYEIGKTLRQLT T0284 82 :RLPVIAD 1xi3A 62 :DALFFVD T0284 103 :VVELERAGIAALTIEDTLLP 1xi3A 71 :VDVALAVDADGVQLGPEDMP T0284 142 :IRAALEAR 1xi3A 91 :IEVAKEIA T0284 152 :PALTIIARTNAE 1xi3A 99 :PNLIIGASVYSL T0284 168 :D 1xi3A 111 :E T0284 173 :RTLAYQEAGADGICL 1xi3A 112 :EALEAEKKGADYLGA T0284 189 :GVR 1xi3A 129 :VFP T0284 193 :FAHLEAIAEHLHIPL 1xi3A 143 :LEGLRKIVESVKIPV T0284 210 :VTYGNPQLRDDARLARLGVRVVVNGHAAY 1xi3A 158 :VAIGGINKDNAREVLKTGVDGIAVISAVM T0284 241 :AIKATYDCLREERGAV 1xi3A 191 :VRKATEELRKIVEEVL Number of specific fragments extracted= 13 number of extra gaps= 2 total=1485 Number of alignments=106 # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0284)G94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xi3A)R70 Warning: unaligning (T0284)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xi3A)R70 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE in next template residue (1xi3A)S128 Warning: unaligning (T0284)G189 because of BadResidue code BAD_PEPTIDE at template residue (1xi3A)S128 T0284 22 :CYHTASV 1xi3A 8 :KLYVITD T0284 30 :DPMSARIAADLGFECGIL 1xi3A 20 :EVESVREALEGGATAIQM T0284 61 :DFALITLSEFVEQATRIGR 1xi3A 38 :RIKNAPTREMYEIGKTLRQ T0284 80 :VARLPVIAD 1xi3A 60 :EYDALFFVD T0284 96 :ALNV 1xi3A 71 :VDVA T0284 107 :ERAGIAALTIEDTLLP 1xi3A 75 :LAVDADGVQLGPEDMP T0284 142 :IRAALEA 1xi3A 91 :IEVAKEI T0284 151 :DPALTIIART 1xi3A 98 :APNLIIGASV T0284 165 :IDVD 1xi3A 108 :YSLE T0284 173 :RTLAYQEAGADGICL 1xi3A 112 :EALEAEKKGADYLGA T0284 190 :VR 1xi3A 129 :VF T0284 192 :DFAHLEAIAEHLHIPLMLVT 1xi3A 142 :GLEGLRKIVESVKIPVVAIG T0284 213 :GNPQL 1xi3A 162 :GINKD T0284 219 :DDARLARLGVRVVVNGHAAY 1xi3A 167 :NAREVLKTGVDGIAVISAVM T0284 245 :TYDCLREERGAV 1xi3A 191 :VRKATEELRKIV T0284 279 :A 1xi3A 203 :E Number of specific fragments extracted= 16 number of extra gaps= 2 total=1501 Number of alignments=107 # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE in next template residue (1xi3A)S128 Warning: unaligning (T0284)G189 because of BadResidue code BAD_PEPTIDE at template residue (1xi3A)S128 T0284 21 :RCYHTASV 1xi3A 8 :KLYVITDR T0284 29 :FDPMSARIAADLGFECGILG 1xi3A 19 :PEVESVREALEGGATAIQMR T0284 62 :FALITLSEFVEQATRIGRVA 1xi3A 39 :IKNAPTREMYEIGKTLRQLT T0284 82 :RLPVIAD 1xi3A 62 :DALFFVD T0284 103 :VVELERAGIAALTIEDTLLP 1xi3A 71 :VDVALAVDADGVQLGPEDMP T0284 142 :IRAALEAR 1xi3A 91 :IEVAKEIA T0284 152 :PALTIIARTNA 1xi3A 99 :PNLIIGASVYS T0284 171 :IQRTLAYQEAGADGICL 1xi3A 110 :LEEALEAEKKGADYLGA T0284 190 :VRD 1xi3A 129 :VFP T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQ 1xi3A 143 :LEGLRKIVESVKIPVVAIGGINKD T0284 219 :DDARLARLGVRVVVNGHAAY 1xi3A 167 :NAREVLKTGVDGIAVISAVM T0284 239 :FAAIKATYDCLREER 1xi3A 192 :RKATEELRKIVEEVL Number of specific fragments extracted= 12 number of extra gaps= 1 total=1513 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o66A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1o66A/merged-good-all-a2m # 1o66A read from 1o66A/merged-good-all-a2m # found chain 1o66A in training set Warning: unaligning (T0284)E274 because last residue in template chain is (1o66A)I260 T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGIL 1o66A 3 :TVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLV T0284 49 :GSVASLQVLAAPDFALITLSEFVEQATRIGRVA 1o66A 42 :GDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA T0284 82 :RLPVIADADHG 1o66A 76 :NAMIVSDLPFG T0284 93 :YG 1o66A 88 :YQ T0284 95 :NALNVMRTVVELERAGIAALTIEDTL 1o66A 91 :SKEQAFAAAAELMAAGAHMVKLEGGV T0284 137 :EGVGKIRAALEA 1o66A 117 :WMAETTEFLQMR T0284 153 :ALTIIAR 1o66A 129 :GIPVCAH T0284 160 :TNAELI 1o66A 139 :TPQSVF T0284 167 :VDAVIQRTLAYQEAGADGICLVGVR 1o66A 158 :AQALLNDAKAHDDAGAAVVLMECVL T0284 193 :FAHLEAIAEHLHIPL 1o66A 183 :AELAKKVTETVSCPT T0284 210 :VTYGNPQLRD 1o66A 198 :IGIGAGADCD T0284 230 :VVVNG 1o66A 208 :GQVLV T0284 249 :LREERG 1o66A 213 :MHDMLG T0284 255 :AVASDLTASELSKKYTFPE 1o66A 241 :AVRAYVAEVKAKTFPAAEH Number of specific fragments extracted= 14 number of extra gaps= 0 total=1527 Number of alignments=109 # 1o66A read from 1o66A/merged-good-all-a2m # found chain 1o66A in training set Warning: unaligning (T0284)D166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1o66A)K157 T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGIL 1o66A 4 :VNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLV T0284 49 :GSVASLQVLAAPDFALITLSEFVEQATRIGR 1o66A 42 :GDSLGMAVQGRKSTLPVSLRDMCYHTECVAR T0284 80 :VARLPVIADADHG 1o66A 74 :AKNAMIVSDLPFG T0284 93 :YG 1o66A 88 :YQ T0284 95 :NALNVMRTVVELERAGIAALTIEDTL 1o66A 91 :SKEQAFAAAAELMAAGAHMVKLEGGV T0284 137 :EGVGKIRAALE 1o66A 117 :WMAETTEFLQM T0284 152 :PALTIIAR 1o66A 128 :RGIPVCAH T0284 160 :TNAELI 1o66A 139 :TPQSVF T0284 168 :DAVIQRTLAYQEAGADGICLVGVR 1o66A 159 :QALLNDAKAHDDAGAAVVLMECVL T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARL 1o66A 183 :AELAKKVTETVSCPTIGIGAGADCDGQVLVMHDM T0284 227 :GVR 1o66A 218 :GIF T0284 246 :YDCLREERGAVAS 1o66A 239 :QAAVRAYVAEVKA T0284 259 :DLTASEL 1o66A 253 :TFPAAEH Number of specific fragments extracted= 13 number of extra gaps= 0 total=1540 Number of alignments=110 # 1o66A read from 1o66A/merged-good-all-a2m # found chain 1o66A in training set Warning: unaligning (T0284)D166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1o66A)K157 T0284 10 :RAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1o66A 4 :VNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAV T0284 57 :LAAPDFALITLSEFVEQATRIGRVA 1o66A 50 :QGRKSTLPVSLRDMCYHTECVARGA T0284 82 :RLPVIADADHGYG 1o66A 76 :NAMIVSDLPFGAY T0284 95 :NALNVMRTVVELERAGIAALTIEDTLL 1o66A 91 :SKEQAFAAAAELMAAGAHMVKLEGGVW T0284 138 :GVGKIRAALEAR 1o66A 118 :MAETTEFLQMRG T0284 154 :LTIIART 1o66A 130 :IPVCAHI T0284 161 :NAELI 1o66A 140 :PQSVF T0284 167 :VDAVIQRTLAYQEAGADGICLVGVR 1o66A 158 :AQALLNDAKAHDDAGAAVVLMECVL T0284 193 :FAHLEAIAEHLHIPLMLVTYGNP 1o66A 183 :AELAKKVTETVSCPTIGIGAGAD T0284 228 :VRVVVNGHAAY 1o66A 206 :CDGQVLVMHDM T0284 239 :FAAIKATYDCLRE 1o66A 239 :QAAVRAYVAEVKA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1551 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rd5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rd5A expands to /projects/compbio/data/pdb/1rd5.pdb.gz 1rd5A:Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1742, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1744, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1746, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 1rd5A # T0284 read from 1rd5A/merged-good-all-a2m # 1rd5A read from 1rd5A/merged-good-all-a2m # adding 1rd5A to template set # found chain 1rd5A in template set Warning: unaligning (T0284)V104 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)F108 Warning: unaligning (T0284)R159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0284)T160 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 T0284 9 :LRAMFRALLDSSRCYHTASV 1rd5A 5 :VSDTMAALMAKGKTAFIPYI T0284 29 :FD 1rd5A 27 :GD T0284 31 :PMSARIAADLGFECGILG 1rd5A 35 :AEALRLLDGCGADVIELG T0284 51 :VASLQ 1rd5A 68 :SVARA T0284 57 :LA 1rd5A 73 :LA T0284 63 :ALITLSEFVEQATRIGRVARLPVIADAD 1rd5A 75 :SGTTMDAVLEMLREVTPELSCPVVLLSY T0284 94 :GNA 1rd5A 103 :YKP T0284 103 :V 1rd5A 106 :I T0284 105 :ELERAGIAALTIEDTL 1rd5A 113 :KMKEAGVHGLIVPDLP T0284 136 :EEGV 1rd5A 129 :YVAA T0284 140 :GKIRAALEA 1rd5A 134 :SLWSEAKNN T0284 153 :ALTIIA 1rd5A 143 :NLELVL T0284 161 :NAEL 1rd5A 151 :TPAI T0284 166 :DVDAVI 1rd5A 155 :PEDRMK T0284 176 :AYQEAGADGICLVGVRD 1rd5A 161 :EITKASEGFVYLVSVNG T0284 193 :FAHLEAIAEHLHIPL 1rd5A 190 :ESLIQEVKKVTNKPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYFAA 1rd5A 205 :AVGFGISKPEHVKQIAQWGADGVIIGSAMVRQL T0284 242 :IKATYDCLREERGAV 1rd5A 247 :LRRLEEYARGMKNAL Number of specific fragments extracted= 18 number of extra gaps= 2 total=1569 Number of alignments=112 # 1rd5A read from 1rd5A/merged-good-all-a2m # found chain 1rd5A in template set Warning: unaligning (T0284)Y93 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)F108 Warning: unaligning (T0284)G94 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)S110 Warning: unaligning (T0284)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)S110 Warning: unaligning (T0284)R159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0284)T160 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 Warning: unaligning (T0284)R191 because of BadResidue code BAD_PEPTIDE in next template residue (1rd5A)G180 T0284 9 :LRAMFRALLDSSRCYHTASVF 1rd5A 5 :VSDTMAALMAKGKTAFIPYIT T0284 30 :D 1rd5A 28 :D T0284 31 :PMSARIAADLGFECGILG 1rd5A 35 :AEALRLLDGCGADVIELG T0284 51 :VASLQ 1rd5A 68 :SVARA T0284 57 :LA 1rd5A 73 :LA T0284 63 :ALITLSEFVEQATRIGRVARLPVIADADH 1rd5A 75 :SGTTMDAVLEMLREVTPELSCPVVLLSYY T0284 96 :AL 1rd5A 111 :LA T0284 105 :ELERAGIAALTIEDTL 1rd5A 113 :KMKEAGVHGLIVPDLP T0284 128 :K 1rd5A 129 :Y T0284 137 :EGVGKIRAALEA 1rd5A 130 :VAAHSLWSEAKN T0284 152 :PALTIIA 1rd5A 142 :NNLELVL T0284 161 :NAE 1rd5A 151 :TPA T0284 165 :IDVDAVIQRTLA 1rd5A 154 :IPEDRMKEITKA T0284 182 :ADGICLVG 1rd5A 168 :GFVYLVSV T0284 190 :V 1rd5A 178 :V T0284 193 :FAHLEAIAEHLHIPL 1rd5A 190 :ESLIQEVKKVTNKPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYFAA 1rd5A 205 :AVGFGISKPEHVKQIAQWGADGVIIGSAMVRQL T0284 242 :IKATYDCLREERGA 1rd5A 247 :LRRLEEYARGMKNA Number of specific fragments extracted= 18 number of extra gaps= 3 total=1587 Number of alignments=113 # 1rd5A read from 1rd5A/merged-good-all-a2m # found chain 1rd5A in template set Warning: unaligning (T0284)M100 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)F108 Warning: unaligning (T0284)R159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0284)T160 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 T0284 9 :LRAMFRALLDSSRCYHTASVF 1rd5A 5 :VSDTMAALMAKGKTAFIPYIT T0284 31 :PMSARIAADLGFECGILG 1rd5A 35 :AEALRLLDGCGADVIELG T0284 49 :GSVASLQ 1rd5A 68 :SVARALA T0284 63 :ALITLSEFVEQATRIGRVARLPVIADAD 1rd5A 75 :SGTTMDAVLEMLREVTPELSCPVVLLSY T0284 94 :G 1rd5A 103 :Y T0284 97 :LNV 1rd5A 104 :KPI T0284 105 :ELERAGIAALTIEDTLLPA 1rd5A 113 :KMKEAGVHGLIVPDLPYVA T0284 135 :VEEGVGKIRA 1rd5A 132 :AHSLWSEAKN T0284 152 :PALTIIA 1rd5A 142 :NNLELVL T0284 161 :NAELI 1rd5A 151 :TPAIP T0284 172 :QRTLAYQEAGADGICLVGVRD 1rd5A 157 :DRMKEITKASEGFVYLVSVNG T0284 193 :FAHLEAIAEHLHIPLMLVTYG 1rd5A 190 :ESLIQEVKKVTNKPVAVGFGI T0284 218 :RDDARLA 1rd5A 211 :SKPEHVK T0284 225 :RLGVRVVVNGHAAYFAA 1rd5A 221 :QWGADGVIIGSAMVRQL T0284 242 :IKATYDCLREERG 1rd5A 247 :LRRLEEYARGMKN Number of specific fragments extracted= 15 number of extra gaps= 2 total=1602 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f6kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f6kA expands to /projects/compbio/data/pdb/1f6k.pdb.gz 1f6kA:Skipped atom 8, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 10, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1087, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 2143, because occupancy 0.500 <= existing 0.500 in 1f6kA Skipped atom 2145, because occupancy 0.500 <= existing 0.500 in 1f6kA # T0284 read from 1f6kA/merged-good-all-a2m # 1f6kA read from 1f6kA/merged-good-all-a2m # adding 1f6kA to template set # found chain 1f6kA in template set T0284 22 :CYHTASV 1f6kA 7 :IFSALLV T0284 29 :FDPMSARIAADL 1f6kA 21 :INEKGLRQIIRH T0284 41 :GFECGILGGSVASLQ 1f6kA 38 :KVDGLYVGGSTGENF T0284 64 :LITLSEFVEQATRIGR 1f6kA 53 :MLSTEEKKEIFRIAKD T0284 80 :VA 1f6kA 70 :AK T0284 82 :RLPVIADAD 1f6kA 73 :QIALIAQVG T0284 93 :YGNALNVMRTVVELERAGIAALTIEDTLLPA 1f6kA 82 :SVNLKEAVELGKYATELGYDCLSAVTPFYYK T0284 133 :ICVEEGVGKIRAALEAR 1f6kA 113 :FSFPEIKHYYDTIIAET T0284 153 :ALTIIARTNAELID 1f6kA 130 :GSNMIVYSIPFLTG T0284 167 :VDA 1f6kA 148 :IEQ T0284 174 :TLAYQEA 1f6kA 151 :FGELYKN T0284 181 :GADGICLVGVR 1f6kA 159 :KVLGVKFTAGD T0284 193 :FAHLEAIAEHLH 1f6kA 170 :FYLLERLKKAYP T0284 205 :IP 1f6kA 183 :HL T0284 210 :VTYGNPQL 1f6kA 185 :IWAGFDEM T0284 220 :DARLARLGVRVVVNGHAAYFA 1f6kA 193 :MLPAASLGVDGAIGSTFNVNG T0284 243 :KATYDCLREERG 1f6kA 214 :VRARQIFELTKA T0284 275 :YQAWAR 1f6kA 239 :NDLIEG Number of specific fragments extracted= 18 number of extra gaps= 0 total=1620 Number of alignments=115 # 1f6kA read from 1f6kA/merged-good-all-a2m # found chain 1f6kA in template set T0284 21 :RCYHTASV 1f6kA 6 :GIFSALLV T0284 29 :FDPMSARIAADL 1f6kA 21 :INEKGLRQIIRH T0284 41 :GFECGILGGSVASLQ 1f6kA 38 :KVDGLYVGGSTGENF T0284 64 :LITLSEFVEQATRIGR 1f6kA 53 :MLSTEEKKEIFRIAKD T0284 80 :VARLPVIADADH 1f6kA 71 :KDQIALIAQVGS T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPA 1f6kA 84 :NLKEAVELGKYATELGYDCLSAVTPFYYK T0284 133 :ICVEEGVGKIRAALEA 1f6kA 113 :FSFPEIKHYYDTIIAE T0284 150 :VDPALTIIAR 1f6kA 129 :TGSNMIVYSI T0284 161 :NAELI 1f6kA 139 :PFLTG T0284 166 :DVDAV 1f6kA 147 :GIEQF T0284 175 :LAYQEAG 1f6kA 152 :GELYKNP T0284 182 :ADGICLVGVR 1f6kA 160 :VLGVKFTAGD T0284 193 :FAHLEAIAEHLH 1f6kA 170 :FYLLERLKKAYP T0284 205 :I 1f6kA 183 :H T0284 207 :LMLVTY 1f6kA 184 :LIWAGF T0284 217 :LRDDARLARLGVRVVVNGHAAYFA 1f6kA 190 :DEMMLPAASLGVDGAIGSTFNVNG T0284 243 :KATYDCLREERGA 1f6kA 214 :VRARQIFELTKAG T0284 261 :TASELSKKY 1f6kA 227 :KLKEALEIQ T0284 272 :PEEYQAWARDY 1f6kA 236 :HVTNDLIEGIL Number of specific fragments extracted= 19 number of extra gaps= 0 total=1639 Number of alignments=116 # 1f6kA read from 1f6kA/merged-good-all-a2m # found chain 1f6kA in template set T0284 21 :RCYHTASV 1f6kA 6 :GIFSALLV T0284 29 :FDPMSARIAADL 1f6kA 21 :INEKGLRQIIRH T0284 41 :GFECGILGGSVASLQ 1f6kA 38 :KVDGLYVGGSTGENF T0284 64 :LITLSEFVEQATRIGRVA 1f6kA 53 :MLSTEEKKEIFRIAKDEA T0284 82 :RLPVIADA 1f6kA 73 :QIALIAQV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1f6kA 81 :GSVNLKEAVELGKYATELGYDCLSAVTPFYYK T0284 133 :ICVEEGVGKIRAALEAR 1f6kA 113 :FSFPEIKHYYDTIIAET T0284 151 :DPA 1f6kA 130 :GSN T0284 155 :TIIARTNAELI 1f6kA 133 :MIVYSIPFLTG T0284 166 :DVD 1f6kA 147 :GIE T0284 173 :RTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1f6kA 150 :QFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIWAGFDEM T0284 222 :RLARLGVRVVVNGHAA 1f6kA 195 :PAASLGVDGAIGSTFN T0284 240 :AAIKATYDCLREERGA 1f6kA 211 :VNGVRARQIFELTKAG T0284 257 :ASDLTASELSKKYTFPEEYQAWARD 1f6kA 227 :KLKEALEIQHVTNDLIEGILANGLY Number of specific fragments extracted= 14 number of extra gaps= 0 total=1653 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nal1/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nal1 expands to /projects/compbio/data/pdb/1nal.pdb.gz 1nal1:# T0284 read from 1nal1/merged-good-all-a2m # 1nal1 read from 1nal1/merged-good-all-a2m # adding 1nal1 to template set # found chain 1nal1 in template set Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE in next template residue (1nal1)G72 T0284 24 :HTASVFD 1nal1 11 :ALLTPFD T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1nal1 28 :RRLVQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGR 1nal1 53 :VQSLSEREQVLEIVAE T0284 80 :V 1nal1 70 :G T0284 82 :RLPVIADA 1nal1 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLP 1nal1 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFYY T0284 128 :KS 1nal1 112 :PF T0284 134 :CVEEGVGKIRAALEAR 1nal1 114 :SFEEHCDHYRAIIDSA T0284 152 :PALTIIARTNAELID 1nal1 130 :DGLPMVVYNIPALSG T0284 167 :VDAV 1nal1 149 :LDQI T0284 175 :LAYQEA 1nal1 153 :NTLVTL T0284 181 :GADGICLVGVR 1nal1 160 :GVGALKQTSGD T0284 193 :FAHLEAIAEHLH 1nal1 171 :LYQMEQIRREHP T0284 205 :I 1nal1 184 :L T0284 207 :L 1nal1 185 :V T0284 210 :VTYGNPQLR 1nal1 186 :LYNGYDEIF T0284 221 :ARLARLGVRVVVNGHAAYFA 1nal1 195 :ASGLLAGADGGIGSTYNIMG T0284 243 :KATYDCLREERG 1nal1 215 :WRYQGIVKALKE Number of specific fragments extracted= 18 number of extra gaps= 1 total=1671 Number of alignments=118 # 1nal1 read from 1nal1/merged-good-all-a2m # found chain 1nal1 in template set Warning: unaligning (T0284)V80 because of BadResidue code BAD_PEPTIDE in next template residue (1nal1)G72 Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE at template residue (1nal1)G72 T0284 10 :RAMFRA 1nal1 24 :KASLRR T0284 33 :SARIAADLGFECGILGGSVASL 1nal1 30 :LVQFNIQQGIDGLYVGGSTGEA T0284 63 :ALITLSEFVEQATRIGR 1nal1 52 :FVQSLSEREQVLEIVAE T0284 82 :RLPVIADA 1nal1 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1nal1 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFY T0284 127 :RK 1nal1 111 :YP T0284 133 :ICVEEGVGKIRAALEAR 1nal1 113 :FSFEEHCDHYRAIIDSA T0284 152 :PA 1nal1 130 :DG T0284 154 :LTIIARTNAELI 1nal1 133 :PMVVYNIPALSG T0284 166 :DVDAV 1nal1 148 :TLDQI T0284 175 :LAYQEA 1nal1 153 :NTLVTL T0284 181 :GADGICLVGV 1nal1 160 :GVGALKQTSG T0284 192 :DFAHLEAIAEHLH 1nal1 170 :DLYQMEQIRREHP T0284 205 :IPLML 1nal1 184 :LVLYN T0284 213 :GNPQL 1nal1 189 :GYDEI T0284 223 :LARL 1nal1 194 :FASG T0284 227 :GVRVVVNGHAAYFA 1nal1 201 :GADGGIGSTYNIMG T0284 243 :KATYDCLREERGA 1nal1 215 :WRYQGIVKALKEG T0284 261 :TASELSKKY 1nal1 228 :DIQTAQKLQ T0284 272 :PEEYQAWARDY 1nal1 237 :TECNKVIDLLI Number of specific fragments extracted= 20 number of extra gaps= 1 total=1691 Number of alignments=119 # 1nal1 read from 1nal1/merged-good-all-a2m # found chain 1nal1 in template set T0284 30 :D 1nal1 23 :D T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1nal1 28 :RRLVQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGRVA 1nal1 53 :VQSLSEREQVLEIVAEEG T0284 82 :RLPVIADA 1nal1 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1nal1 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFYYP T0284 133 :ICVEEGVGKIRAALEARVDPALTII 1nal1 113 :FSFEEHCDHYRAIIDSADGLPMVVY T0284 159 :RTNAELI 1nal1 138 :NIPALSG T0284 166 :DVD 1nal1 148 :TLD T0284 173 :RTLAYQEA 1nal1 151 :QINTLVTL T0284 181 :GADGI 1nal1 160 :GVGAL T0284 187 :LVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1nal1 165 :KQTSGDLYQMEQIRREHPDLVLYNGYDEI T0284 220 :DARLARLGVRVVVNGHAAYFAAIKATYDC 1nal1 195 :ASGLLAGADGGIGSTYNIMGWRYQGIVKA T0284 252 :E 1nal1 224 :L T0284 254 :GAVASDLTASELSKKYTFPEEYQAWARD 1nal1 225 :KEGDIQTAQKLQTECNKVIDLLIKTGVF Number of specific fragments extracted= 14 number of extra gaps= 0 total=1705 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oy0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284/1oy0A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0284/1oy0A/merged-good-all-a2m.gz for input Trying 1oy0A/merged-good-all-a2m Error: Couldn't open file 1oy0A/merged-good-all-a2m or 1oy0A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nal3/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nal3 expands to /projects/compbio/data/pdb/1nal.pdb.gz 1nal3:# T0284 read from 1nal3/merged-good-all-a2m # 1nal3 read from 1nal3/merged-good-all-a2m # adding 1nal3 to template set # found chain 1nal3 in template set T0284 4 :ASHHELRAMF 1nal3 21 :ALDKASLRRL T0284 34 :ARIAADLGFECGILGGSVASLQ 1nal3 31 :VQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGR 1nal3 53 :VQSLSEREQVLEIVAE T0284 80 :VA 1nal3 70 :GK T0284 82 :RLPVIADA 1nal3 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1nal3 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFY T0284 127 :RKS 1nal3 111 :YPF T0284 134 :CVEEGVGKIRAALEAR 1nal3 114 :SFEEHCDHYRAIIDSA T0284 153 :ALTIIA 1nal3 131 :GLPMVV T0284 159 :RTNAEL 1nal3 138 :NIPALS T0284 165 :IDVDAV 1nal3 147 :LTLDQI T0284 175 :LAYQEA 1nal3 153 :NTLVTL T0284 181 :GADGICLVGVR 1nal3 160 :GVGALKQTSGD T0284 193 :FAHLEAIAEHLH 1nal3 171 :LYQMEQIRREHP T0284 205 :I 1nal3 184 :L T0284 207 :L 1nal3 185 :V T0284 210 :VTYGNPQLR 1nal3 186 :LYNGYDEIF T0284 221 :ARLARLGVRVVVNGHAAYFA 1nal3 195 :ASGLLAGADGGIGSTYNIMG T0284 243 :KATYDCLREERG 1nal3 215 :WRYQGIVKALKE T0284 257 :ASDLTASEL 1nal3 233 :QKLQTECNK Number of specific fragments extracted= 20 number of extra gaps= 0 total=1725 Number of alignments=121 # 1nal3 read from 1nal3/merged-good-all-a2m # found chain 1nal3 in template set T0284 11 :AMFRALL 1nal3 25 :ASLRRLV T0284 35 :RIAADLGFECGILGGSVASLQ 1nal3 32 :QFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGR 1nal3 53 :VQSLSEREQVLEIVAE T0284 80 :VARLPVIADA 1nal3 71 :KGKIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1nal3 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFY T0284 127 :RK 1nal3 111 :YP T0284 133 :ICVEEGVGKIRAALEAR 1nal3 113 :FSFEEHCDHYRAIIDSA T0284 152 :PA 1nal3 130 :DG T0284 154 :LTIIARTNAELI 1nal3 133 :PMVVYNIPALSG T0284 166 :DVDAVI 1nal3 148 :TLDQIN T0284 176 :AYQEA 1nal3 154 :TLVTL T0284 181 :GADGICLVGV 1nal3 160 :GVGALKQTSG T0284 192 :DFAHLEAIAEHLH 1nal3 170 :DLYQMEQIRREHP T0284 205 :IPLML 1nal3 184 :LVLYN T0284 213 :GNPQLR 1nal3 189 :GYDEIF T0284 221 :ARLARLGVRVVVNGHAAYF 1nal3 195 :ASGLLAGADGGIGSTYNIM T0284 242 :IKATYDCLREERGA 1nal3 214 :GWRYQGIVKALKEG T0284 261 :TASELSKKY 1nal3 228 :DIQTAQKLQ T0284 272 :PEEYQAWARD 1nal3 237 :TECNKVIDLL Number of specific fragments extracted= 19 number of extra gaps= 0 total=1744 Number of alignments=122 # 1nal3 read from 1nal3/merged-good-all-a2m # found chain 1nal3 in template set T0284 5 :SHHELRAMFRA 1nal3 22 :LDKASLRRLVQ T0284 36 :IAADLGFECGILGGSVASLQ 1nal3 33 :FNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGRVA 1nal3 53 :VQSLSEREQVLEIVAEEG T0284 82 :RLPVIADA 1nal3 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1nal3 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFYYP T0284 133 :ICVEEGVGKIRAALEARVDPALTII 1nal3 113 :FSFEEHCDHYRAIIDSADGLPMVVY T0284 159 :RTNAELI 1nal3 138 :NIPALSG T0284 166 :DVD 1nal3 148 :TLD T0284 173 :RTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1nal3 151 :QINTLVTLPGVGALKQTSGDLYQMEQIRREHPDLVLYNGYDEI T0284 220 :DARLARLGVRVVVNGHAAYFAAIKATYDCLREE 1nal3 195 :ASGLLAGADGGIGSTYNIMGWRYQGIVKALKEG T0284 254 :GAVASDLTASELSKKYTFPEEYQAWA 1nal3 228 :DIQTAQKLQTECNKVIDLLIKTGVFR Number of specific fragments extracted= 11 number of extra gaps= 0 total=1755 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p0kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1p0kA expands to /projects/compbio/data/pdb/1p0k.pdb.gz 1p0kA:# T0284 read from 1p0kA/merged-good-all-a2m # 1p0kA read from 1p0kA/merged-good-all-a2m # adding 1p0kA to template set # found chain 1p0kA in template set Warning: unaligning (T0284)Q124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1p0kA)F163 Warning: unaligning (T0284)V135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p0kA)F163 Warning: unaligning (T0284)G189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1p0kA)R226 T0284 22 :CYHTASVFD 1p0kA 56 :SPIFINAMT T0284 31 :PMSARIAADLGFECG 1p0kA 76 :KSLARAASQAGIPLA T0284 47 :L 1p0kA 91 :V T0284 49 :GSVASLQ 1p0kA 92 :GSQMSAL T0284 60 :PD 1p0kA 99 :KD T0284 68 :SEFVEQATRIGR 1p0kA 101 :PSERLSYEIVRK T0284 80 :VARLPVIADADHG 1p0kA 114 :NPNGLIFANLGSE T0284 94 :GNALNVMRTVVE 1p0kA 127 :ATAAQAKEAVEM T0284 109 :AGIAALTIEDTLLPA 1p0kA 139 :IGANALQIHLNVIQE T0284 136 :EEGVGKIRAALEAR 1p0kA 164 :SGALKRIEQICSRV T0284 153 :ALTIIARTNAELIDVDA 1p0kA 178 :SVPVIVKEVGFGMSKAS T0284 174 :TLAYQEAGADGICLV 1p0kA 195 :AGKLYEAGAAAVDIG T0284 199 :IAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKA 1p0kA 245 :IRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDS T0284 245 :TYDCLREERGAVASDLTA 1p0kA 295 :LLEEIQLILEELKLIMTV Number of specific fragments extracted= 14 number of extra gaps= 0 total=1769 Number of alignments=124 # 1p0kA read from 1p0kA/merged-good-all-a2m # found chain 1p0kA in template set Warning: unaligning (T0284)Q124 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1p0kA)F163 Warning: unaligning (T0284)V135 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p0kA)F163 Warning: unaligning (T0284)G189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1p0kA)R226 T0284 1 :MHRASHHELRAMF 1p0kA 63 :MTGGGGKLTYEIN T0284 31 :PMSARIAADLGFECG 1p0kA 76 :KSLARAASQAGIPLA T0284 47 :L 1p0kA 91 :V T0284 49 :GSVA 1p0kA 92 :GSQM T0284 57 :LAAPD 1p0kA 96 :SALKD T0284 68 :SEFVEQATRIGR 1p0kA 101 :PSERLSYEIVRK T0284 80 :VARLPVIADADHG 1p0kA 114 :NPNGLIFANLGSE T0284 94 :GNALNVMRTVVE 1p0kA 127 :ATAAQAKEAVEM T0284 109 :AGIAALTIEDTLLPA 1p0kA 139 :IGANALQIHLNVIQE T0284 136 :EEGVGKIRAALEAR 1p0kA 164 :SGALKRIEQICSRV T0284 153 :ALTIIARTNAELIDVD 1p0kA 178 :SVPVIVKEVGFGMSKA T0284 173 :RTLAYQEAGADGICLV 1p0kA 194 :SAGKLYEAGAAAVDIG T0284 199 :IAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIK 1p0kA 245 :IRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD T0284 244 :ATYDCLREERGAVAS 1p0kA 294 :GLLEEIQLILEELKL T0284 259 :DLTASELSK 1p0kA 315 :ARTIADLQK T0284 271 :FPEEYQAWAR 1p0kA 329 :KGETHHWLTE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1785 Number of alignments=125 # 1p0kA read from 1p0kA/merged-good-all-a2m # found chain 1p0kA in template set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1p0kA)F163 Warning: unaligning (T0284)L67 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p0kA)F163 Warning: unaligning (T0284)A123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1p0kA)R226 T0284 3 :RASHHELRAMFRALLDSSRCYHTASV 1p0kA 100 :DPSERLSYEIVRKENPNGLIFANLGS T0284 29 :FDPMSARIAADL 1p0kA 127 :ATAAQAKEAVEM T0284 41 :GFECGIL 1p0kA 140 :GANALQI T0284 55 :QV 1p0kA 152 :QE T0284 68 :SEFVEQATRIGRVARLPVIA 1p0kA 164 :SGALKRIEQICSRVSVPVIV T0284 89 :ADHGYG 1p0kA 184 :KEVGFG T0284 95 :NAL 1p0kA 191 :SKA T0284 102 :TVVELERAGIAALTI 1p0kA 194 :SAGKLYEAGAAAVDI T0284 124 :QFGRKSTDLICVEEGVGKIRA 1p0kA 227 :QISFFNSWGISTAASLAEIRS T0284 149 :RVDPALTIIA 1p0kA 248 :EFPASTMIAS T0284 164 :LI 1p0kA 259 :GL T0284 166 :D 1p0kA 262 :D T0284 171 :IQRTLAYQEAGADGICLV 1p0kA 263 :ALDVAKAIALGASCTGMA T0284 197 :EAIAEHL 1p0kA 281 :GHFLKAL T0284 219 :DDARLAR 1p0kA 291 :GEEGLLE T0284 237 :AYFAAIKATYDCLREE 1p0kA 298 :EIQLILEELKLIMTVL T0284 257 :AS 1p0kA 314 :GA T0284 260 :LTASELSK 1p0kA 316 :RTIADLQK Number of specific fragments extracted= 18 number of extra gaps= 0 total=1803 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fiqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fiqA expands to /projects/compbio/data/pdb/2fiq.pdb.gz 2fiqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1190, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1192, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1194, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1196, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1200, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1727, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 2fiqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2442, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2444, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2446, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2448, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2450, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2452, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2454, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2456, because occupancy 0.500 <= existing 0.500 in 2fiqA Skipped atom 2458, because occupancy 0.500 <= existing 0.500 in 2fiqA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0284 read from 2fiqA/merged-good-all-a2m # 2fiqA read from 2fiqA/merged-good-all-a2m # adding 2fiqA to template set # found chain 2fiqA in template set Warning: unaligning (T0284)L164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fiqA)V185 Warning: unaligning (T0284)Y282 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fiqA)Y343 Warning: unaligning (T0284)M283 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fiqA)Y343 T0284 10 :RAMFRALLDSSRC 2fiqA 2 :KTLIARHKAGEHI T0284 23 :YHTASVFDPMSARIAADLG 2fiqA 16 :ICSVCSAHPLVIEAALAFD T0284 42 :FECGILG 2fiqA 39 :RKVLIEA T0284 49 :GS 2fiqA 47 :SN T0284 55 :QVLAAPDFALITLSEFVEQATRIGR 2fiqA 49 :QVNQFGGYTGMTPADFREFVFAIAD T0284 82 :RLPVIAD 2fiqA 81 :RIILGGD T0284 89 :ADHGYG 2fiqA 90 :GPNCWQ T0284 95 :N 2fiqA 98 :N T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 2fiqA 103 :MEKSVELVKAYVRAGFSKIHLDASM T0284 124 :QFGR 2fiqA 128 :SCAG T0284 128 :KSTD 2fiqA 133 :PIPL T0284 134 :CVEEGVGKIRAALEAR 2fiqA 137 :APETVAERAAVLCFAA T0284 150 :VD 2fiqA 156 :AT T0284 154 :LTIIARTNAE 2fiqA 164 :LSYVIGTEVP T0284 166 :DVDAVIQRTLAYQEA 2fiqA 189 :HVEDAANTLRTHQKA T0284 182 :ADGICLV 2fiqA 216 :VIAIVVQ T0284 189 :GV 2fiqA 224 :GV T0284 192 :DFAHLEAIAEHLH 2fiqA 236 :QPQEAQALAQWIE T0284 205 :IPL 2fiqA 251 :RMV T0284 210 :VTYGNPQLRDD 2fiqA 254 :YEAHSTDYQTR T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 2fiqA 268 :WELVRDHFAILKVGPALTFALREAIFALAQIEQE T0284 255 :AVASDLTASELSKKYTFPEEYQAWARD 2fiqA 315 :IEEVMLDEPQYWKKYYRTGFNDSLLDI Number of specific fragments extracted= 22 number of extra gaps= 1 total=1825 Number of alignments=127 # 2fiqA read from 2fiqA/merged-good-all-a2m # found chain 2fiqA in template set Warning: unaligning (T0284)L164 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fiqA)V185 T0284 10 :RAMFRALLDSSRC 2fiqA 2 :KTLIARHKAGEHI T0284 23 :YHTASVFDPMSARIAADL 2fiqA 16 :ICSVCSAHPLVIEAALAF T0284 41 :GFECGILG 2fiqA 38 :TRKVLIEA T0284 54 :LQVLAAPDFALITLSEFVEQATRIGR 2fiqA 48 :NQVNQFGGYTGMTPADFREFVFAIAD T0284 80 :VARLPVIAD 2fiqA 79 :RERIILGGD T0284 89 :ADHGYG 2fiqA 90 :GPNCWQ T0284 95 :N 2fiqA 98 :N T0284 96 :ALNVMRTVVELERAGIAALTIEDTLL 2fiqA 103 :MEKSVELVKAYVRAGFSKIHLDASMS T0284 126 :GRKSTDLICVEEGVGKIRAALEA 2fiqA 129 :CAGDPIPLAPETVAERAAVLCFA T0284 149 :RVDP 2fiqA 155 :VATD T0284 154 :LTIIARTNAE 2fiqA 164 :LSYVIGTEVP T0284 167 :VDAVIQRTLAYQEA 2fiqA 190 :VEDAANTLRTHQKA T0284 182 :ADGICLVGVR 2fiqA 216 :VIAIVVQPGV T0284 192 :DFAHLEAIAEHLH 2fiqA 236 :QPQEAQALAQWIE T0284 205 :IPLMLVT 2fiqA 250 :TRMVYEA T0284 213 :GNPQLRDDARLARL 2fiqA 257 :HSTDYQTRTAYWEL T0284 227 :GVRVVVNGHAAYFAAIKATYDCLREERGAVAS 2fiqA 274 :HFAILKVGPALTFALREAIFALAQIEQELIAP T0284 259 :DLTASELSKKY 2fiqA 331 :RTGFNDSLLDI Number of specific fragments extracted= 18 number of extra gaps= 0 total=1843 Number of alignments=128 # 2fiqA read from 2fiqA/merged-good-all-a2m # found chain 2fiqA in template set T0284 11 :AMFRALLDSSR 2fiqA 3 :TLIARHKAGEH T0284 22 :CYHTASVFDPMSARIAADL 2fiqA 15 :GICSVCSAHPLVIEAALAF T0284 41 :GFECGILGGSVAS 2fiqA 38 :TRKVLIEATSNQV T0284 57 :LAAPDFALITLSEFVEQATRIGRVARL 2fiqA 51 :NQFGGYTGMTPADFREFVFAIADKVGF T0284 84 :PVIADADHGYG 2fiqA 82 :IILGGDHLGPN T0284 95 :N 2fiqA 98 :N T0284 96 :ALNVMRTVVELERAGIAALTIEDTLLPAQFG 2fiqA 103 :MEKSVELVKAYVRAGFSKIHLDASMSCAGDP T0284 132 :LICVEEGVGKIRAALEARVD 2fiqA 135 :PLAPETVAERAAVLCFAAES T0284 154 :LTIIA 2fiqA 165 :SYVIG T0284 160 :TNA 2fiqA 170 :TEV T0284 167 :VDAVIQRTLAYQEA 2fiqA 193 :AANTLRTHQKAFIA T0284 181 :GA 2fiqA 208 :GL T0284 183 :DGICLVGVRD 2fiqA 217 :IAIVVQPGVE T0284 193 :FAHLEAIAEHLHIPLMLVTYGNPQLRDDARLA 2fiqA 237 :PQEAQALAQWIENTRMVYEAHSTDYQTRTAYW T0284 225 :RLGVRVVVNGHAAYFAAIKATYDCLR 2fiqA 272 :RDHFAILKVGPALTFALREAIFALAQ T0284 261 :TASELSKKYTFPEEYQAWARDYMEV 2fiqA 298 :IEQELIAPENRSGCLAVIEEVMLDE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1859 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hl2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1hl2A/merged-good-all-a2m # 1hl2A read from 1hl2A/merged-good-all-a2m # found chain 1hl2A in training set T0284 25 :TASVFD 1hl2A 12 :LLTPFD T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1hl2A 28 :RRLVQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGR 1hl2A 53 :VQSLSEREQVLEIVAE T0284 80 :VA 1hl2A 70 :AK T0284 82 :RLPVIADA 1hl2A 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTL 1hl2A 81 :GCVSTAESQQLAASAKRYGFDAVSAVTPF T0284 126 :GRKS 1hl2A 110 :YYPF T0284 134 :CVEEGVGKIRAALEAR 1hl2A 114 :SFEEHCDHYRAIIDSA T0284 152 :PALTIIA 1hl2A 130 :DGLPMVV T0284 159 :RTNAEL 1hl2A 138 :NIPARS T0284 167 :VDAV 1hl2A 149 :LDQI T0284 175 :LAYQEA 1hl2A 153 :NTLVTL T0284 181 :GADGICLVGVR 1hl2A 160 :GVGALKQTSGD T0284 193 :FAHLEAIAEHLH 1hl2A 171 :LYQMEQIRREHP T0284 205 :I 1hl2A 184 :L T0284 207 :L 1hl2A 185 :V T0284 210 :VTYGNPQLR 1hl2A 186 :LYNGYDEIF T0284 221 :ARLARLGVRVVVNGHAAYFA 1hl2A 195 :ASGLLAGADGGIGSTYNIMG T0284 243 :KATYDCLREERG 1hl2A 215 :WRYQGIVKALKE T0284 255 :AVASDLTASEL 1hl2A 231 :TAQKLQTECNK Number of specific fragments extracted= 20 number of extra gaps= 0 total=1879 Number of alignments=130 # 1hl2A read from 1hl2A/merged-good-all-a2m # found chain 1hl2A in training set T0284 11 :AMFRA 1hl2A 25 :ASLRR T0284 33 :SARIAADLGFECGILGGSVASL 1hl2A 30 :LVQFNIQQGIDGLYVGGSTGEA T0284 63 :ALITLSEFVEQATRIGR 1hl2A 52 :FVQSLSEREQVLEIVAE T0284 80 :VARLPVIADA 1hl2A 71 :KGKIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1hl2A 81 :GCVSTAESQQLAASAKRYGFDAVSAVTPFY T0284 127 :RK 1hl2A 111 :YP T0284 133 :ICVEEGVGKIRAALEAR 1hl2A 113 :FSFEEHCDHYRAIIDSA T0284 152 :PA 1hl2A 130 :DG T0284 154 :LTIIARTNAELI 1hl2A 133 :PMVVYNIPARSG T0284 166 :DVDAV 1hl2A 148 :TLDQI T0284 175 :LAYQEA 1hl2A 153 :NTLVTL T0284 181 :GADGICLVGV 1hl2A 160 :GVGALKQTSG T0284 192 :DFAHLEAIAEHLH 1hl2A 170 :DLYQMEQIRREHP T0284 205 :IPL 1hl2A 184 :LVL T0284 209 :LV 1hl2A 187 :YN T0284 213 :GNPQL 1hl2A 189 :GYDEI T0284 223 :LARL 1hl2A 194 :FASG T0284 227 :GVRVVVNGHAAYFA 1hl2A 201 :GADGGIGSTYNIMG T0284 243 :KATYDCLREERGA 1hl2A 215 :WRYQGIVKALKEG T0284 261 :TASELSKKYT 1hl2A 228 :DIQTAQKLQT T0284 273 :EEYQAWA 1hl2A 238 :ECNKVID Number of specific fragments extracted= 21 number of extra gaps= 0 total=1900 Number of alignments=131 # 1hl2A read from 1hl2A/merged-good-all-a2m # found chain 1hl2A in training set T0284 5 :SHHELRAM 1hl2A 22 :LDKASLRR T0284 33 :SARIAADLGFECGILGGSVASLQ 1hl2A 30 :LVQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGRVA 1hl2A 53 :VQSLSEREQVLEIVAEEA T0284 82 :RLPVIADA 1hl2A 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1hl2A 81 :GCVSTAESQQLAASAKRYGFDAVSAVTPFYYP T0284 133 :ICVEEGVGKIRAALEARVDPALTIIA 1hl2A 113 :FSFEEHCDHYRAIIDSADGLPMVVYN T0284 160 :TNAELI 1hl2A 139 :IPARSG T0284 166 :DVD 1hl2A 148 :TLD T0284 173 :RTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1hl2A 151 :QINTLVTLPGVGALKQTSGDLYQMEQIRREHPDLVLYNGYDEI T0284 220 :DARLARLGVRVVVNGHAAYFAAIKATYDCL 1hl2A 195 :ASGLLAGADGGIGSTYNIMGWRYQGIVKAL T0284 253 :RGA 1hl2A 225 :KEG T0284 256 :VASDLTASELSKKYTFPEEYQAWA 1hl2A 230 :QTAQKLQTECNKVIDLLIKTGVFR Number of specific fragments extracted= 12 number of extra gaps= 0 total=1912 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p4cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1p4cA/merged-good-all-a2m # 1p4cA read from 1p4cA/merged-good-all-a2m # found chain 1p4cA in training set Warning: unaligning (T0284)F125 because of BadResidue code BAD_PEPTIDE at template residue (1p4cA)L189 Warning: unaligning (T0284)T130 because of BadResidue code BAD_PEPTIDE in next template residue (1p4cA)A195 T0284 22 :CYHTASV 1p4cA 74 :PLLIGPT T0284 30 :DPMSARIAADLGFECGIL 1p4cA 91 :DLALARAATKAGIPFVLS T0284 50 :SV 1p4cA 109 :TA T0284 63 :ALIT 1p4cA 111 :SNMS T0284 74 :ATRIGRVARLPVIADADHG 1p4cA 115 :IEDLARQCDGDLWFQLYVI T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPA 1p4cA 134 :HREIAQGMVLKALHTGYTTLVLTTDVAVN T0284 126 :GRKS 1p4cA 190 :GKMD T0284 131 :DLICVEEGVGKIRAALEARVD 1p4cA 206 :RQMDASFNWEALRWLRDLWPH T0284 153 :ALTIIART 1p4cA 227 :KLLVKGLL T0284 166 :DVDA 1p4cA 235 :SAED T0284 174 :TLAYQEAGADGICLVG 1p4cA 239 :ADRCIAEGADGVILSN T0284 191 :RD 1p4cA 264 :IS T0284 193 :FAHLEAIAEHLHIPL 1p4cA 267 :MEVLAQSVAKTGKPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKA 1p4cA 282 :LIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAAR T0284 245 :TYDCLREERGAVASDLTASELSKK 1p4cA 322 :VDEVLTLLKADIDRTLAQIGCPDI Number of specific fragments extracted= 15 number of extra gaps= 2 total=1927 Number of alignments=133 # 1p4cA read from 1p4cA/merged-good-all-a2m # found chain 1p4cA in training set T0284 22 :CYHTASV 1p4cA 74 :PLLIGPT T0284 30 :DPMSARIAADLGFECGIL 1p4cA 91 :DLALARAATKAGIPFVLS T0284 61 :DFALIT 1p4cA 109 :TASNMS T0284 74 :ATRIGRVARLPVIADADHG 1p4cA 115 :IEDLARQCDGDLWFQLYVI T0284 95 :NALNVMRTVVELERAGIAALTIED 1p4cA 134 :HREIAQGMVLKALHTGYTTLVLTT T0284 122 :P 1p4cA 177 :P T0284 123 :AQFGRKS 1p4cA 181 :LKNFEGI T0284 131 :DLICVEEGVGKIRAALEAR 1p4cA 206 :RQMDASFNWEALRWLRDLW T0284 151 :DPALTIIART 1p4cA 225 :PHKLLVKGLL T0284 166 :DVD 1p4cA 235 :SAE T0284 173 :RTLAYQEAGADGICLV 1p4cA 238 :DADRCIAEGADGVILS T0284 189 :GVRDFAHLEAIAEHLHIPL 1p4cA 263 :AISPMEVLAQSVAKTGKPV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAI 1p4cA 282 :LIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA T0284 244 :ATYDCLREERGAVA 1p4cA 321 :GVDEVLTLLKADID T0284 264 :ELSKK 1p4cA 335 :RTLAQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=1942 Number of alignments=134 # 1p4cA read from 1p4cA/merged-good-all-a2m # found chain 1p4cA in training set Warning: unaligning (T0284)Q124 because of BadResidue code BAD_PEPTIDE in next template residue (1p4cA)L189 Warning: unaligning (T0284)F125 because of BadResidue code BAD_PEPTIDE at template residue (1p4cA)L189 Warning: unaligning (T0284)T130 because of BadResidue code BAD_PEPTIDE in next template residue (1p4cA)A195 Warning: unaligning (T0284)D131 because of BadResidue code BAD_PEPTIDE at template residue (1p4cA)A195 T0284 22 :CYHTASVF 1p4cA 74 :PLLIGPTG T0284 30 :DPMSARIAADLGFECGILG 1p4cA 91 :DLALARAATKAGIPFVLST T0284 59 :APDFA 1p4cA 110 :ASNMS T0284 74 :ATRIGRVARLPVIADADHG 1p4cA 115 :IEDLARQCDGDLWFQLYVI T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPA 1p4cA 134 :HREIAQGMVLKALHTGYTTLVLTTDVAVN T0284 126 :GRKS 1p4cA 190 :GKMD T0284 135 :VEEG 1p4cA 199 :MQAA T0284 139 :VGKIRAALE 1p4cA 214 :WEALRWLRD T0284 149 :RVDPALTIIARTNA 1p4cA 223 :LWPHKLLVKGLLSA T0284 172 :QRTLAYQEAGADGICLVGVRD 1p4cA 237 :EDADRCIAEGADGVILSNHGG T0284 193 :FAHLEAIAEHLHIPLMLVT 1p4cA 267 :MEVLAQSVAKTGKPVLIDS T0284 216 :QLRDDARLAR 1p4cA 286 :GFRRGSDIVK T0284 226 :LGVRVVVNGHAAYFAA 1p4cA 299 :LGAEAVLLGRATLYGL T0284 242 :IKATYDCLREERGAVASDLTAS 1p4cA 326 :LTLLKADIDRTLAQIGCPDITS Number of specific fragments extracted= 14 number of extra gaps= 2 total=1956 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gqnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1gqnA/merged-good-all-a2m # 1gqnA read from 1gqnA/merged-good-all-a2m # found chain 1gqnA in training set Warning: unaligning (T0284)P206 because of BadResidue code BAD_PEPTIDE in next template residue (1gqnA)V200 Warning: unaligning (T0284)L207 because of BadResidue code BAD_PEPTIDE at template residue (1gqnA)V200 T0284 19 :SSRCYHTASVFD 1gqnA 13 :EGMPKIIVSLMG T0284 31 :PMSARIAADLGFECGILGGSV 1gqnA 31 :KAEALAYREATFDILEWRVDH T0284 59 :APDFA 1gqnA 52 :FMDIA T0284 66 :TLSEFVEQATRIGRVA 1gqnA 57 :STQSVLTAARVIRDAM T0284 82 :RLPVIADADH 1gqnA 74 :DIPLLFTFRS T0284 92 :GYG 1gqnA 87 :GGE T0284 95 :NALNVMRTVVELERAG 1gqnA 93 :TTQHYLTLNRAAIDSG T0284 111 :IAALTIE 1gqnA 110 :VDMIDLE T0284 137 :EGV 1gqnA 117 :LFT T0284 140 :GKIRAALEAR 1gqnA 122 :ADVKATVDYA T0284 150 :VDPALTIIARTNAELID 1gqnA 133 :AHNVYVVMSNHDFHQTP T0284 167 :VDAVIQRTLAYQEAGADGICLV 1gqnA 151 :AEEMVSRLRKMQALGADIPKIA T0284 189 :GVRDFAHLEAIAEHL 1gqnA 174 :MPQSKHDVLTLLTAT T0284 204 :HI 1gqnA 197 :DR T0284 208 :MLVTYGNP 1gqnA 201 :ITMSMAKE T0284 219 :DD 1gqnA 209 :GV T0284 221 :ARLARLGVRVVVNGHA 1gqnA 214 :LAGEVFGSAATFGAVK T0284 239 :FA 1gqnA 238 :AV T0284 243 :KATYDCLREERG 1gqnA 240 :NDLRSVLMILHN Number of specific fragments extracted= 19 number of extra gaps= 1 total=1975 Number of alignments=136 # 1gqnA read from 1gqnA/merged-good-all-a2m # found chain 1gqnA in training set Warning: unaligning (T0284)P206 because of BadResidue code BAD_PEPTIDE in next template residue (1gqnA)V200 Warning: unaligning (T0284)L207 because of BadResidue code BAD_PEPTIDE at template residue (1gqnA)V200 T0284 19 :SSRCYHTASVFD 1gqnA 13 :EGMPKIIVSLMG T0284 31 :PMSARIAADLGFECGILGGS 1gqnA 31 :KAEALAYREATFDILEWRVD T0284 58 :AAPDFA 1gqnA 51 :HFMDIA T0284 66 :TLSEFVEQATRIGR 1gqnA 57 :STQSVLTAARVIRD T0284 80 :VARLPVIADADH 1gqnA 72 :MPDIPLLFTFRS T0284 92 :GYG 1gqnA 87 :GGE T0284 95 :NALNVMRTVVELERAG 1gqnA 93 :TTQHYLTLNRAAIDSG T0284 111 :IAALTIED 1gqnA 110 :VDMIDLEL T0284 138 :GV 1gqnA 118 :FT T0284 140 :GKIRAALEARVDPA 1gqnA 122 :ADVKATVDYAHAHN T0284 154 :LTIIARTNAELI 1gqnA 137 :YVVMSNHDFHQT T0284 166 :DVDAVIQRTLAYQEAGADGICLVG 1gqnA 150 :SAEEMVSRLRKMQALGADIPKIAV T0284 190 :VRDFAHLEAIAEHL 1gqnA 175 :PQSKHDVLTLLTAT T0284 204 :HI 1gqnA 197 :DR T0284 208 :MLVTYGNPQLRDDARLARLGVRVVVNG 1gqnA 201 :ITMSMAKEGVISRLAGEVFGSAATFGA T0284 256 :VAS 1gqnA 228 :VKQ T0284 259 :DLTASELSKKY 1gqnA 236 :QIAVNDLRSVL Number of specific fragments extracted= 17 number of extra gaps= 1 total=1992 Number of alignments=137 # 1gqnA read from 1gqnA/merged-good-all-a2m # found chain 1gqnA in training set Warning: unaligning (T0284)P206 because of BadResidue code BAD_PEPTIDE in next template residue (1gqnA)V200 Warning: unaligning (T0284)L207 because of BadResidue code BAD_PEPTIDE at template residue (1gqnA)V200 T0284 19 :SSRCYHTASVFD 1gqnA 13 :EGMPKIIVSLMG T0284 31 :PMSARIAADLGFECGILG 1gqnA 31 :KAEALAYREATFDILEWR T0284 56 :VLAAPDF 1gqnA 49 :VDHFMDI T0284 65 :ITLSEFVEQATRIGRVA 1gqnA 56 :ASTQSVLTAARVIRDAM T0284 82 :RLPVIADA 1gqnA 74 :DIPLLFTF T0284 92 :G 1gqnA 87 :G T0284 94 :G 1gqnA 88 :G T0284 95 :NALNVMRTVVELERAG 1gqnA 93 :TTQHYLTLNRAAIDSG T0284 111 :IAALTIEDTLL 1gqnA 110 :VDMIDLELFTG T0284 135 :VEEGVGKIRAALEARV 1gqnA 121 :DADVKATVDYAHAHNV T0284 154 :LTIIARTNAELI 1gqnA 137 :YVVMSNHDFHQT T0284 166 :DVDAVIQRTLAYQEAGADGICL 1gqnA 150 :SAEEMVSRLRKMQALGADIPKI T0284 188 :VGVRDFAHLEAIAEHL 1gqnA 173 :VMPQSKHDVLTLLTAT T0284 204 :HI 1gqnA 197 :DR T0284 208 :MLVTYGN 1gqnA 201 :ITMSMAK T0284 223 :LARLGVRVVVNGH 1gqnA 216 :GEVFGSAATFGAV T0284 242 :IKATYDCLREERG 1gqnA 239 :VNDLRSVLMILHN Number of specific fragments extracted= 17 number of extra gaps= 1 total=2009 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mdl/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mdl expands to /projects/compbio/data/pdb/1mdl.pdb.gz 1mdl:Warning: there is no chain 1mdl will retry with 1mdlA # T0284 read from 1mdl/merged-good-all-a2m # 1mdl read from 1mdl/merged-good-all-a2m # adding 1mdl to template set # found chain 1mdl in template set Warning: unaligning (T0284)A153 because of BadResidue code BAD_PEPTIDE in next template residue (1mdl)F190 Warning: unaligning (T0284)L154 because of BadResidue code BAD_PEPTIDE at template residue (1mdl)F190 T0284 7 :HELRAMFRALLD 1mdl 60 :KSLKQLLDDMAA T0284 19 :SSRCY 1mdl 74 :VNEPL T0284 31 :PMSARIAADLG 1mdl 82 :SLEAMLAKRFC T0284 49 :GSVASLQ 1mdl 106 :GIDMAAW T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1mdl 133 :PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPA T0284 135 :VEEGVGKIRAALEARVD 1mdl 172 :LDQDLAVVRSIRQAVGD T0284 155 :TIIART 1mdl 191 :GIMVDY T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVGV 1mdl 197 :NQSLDVPAAIKRSQALQQEGVTWIEEPTL T0284 191 :RDFAHLEAIAEHLHIPLML 1mdl 227 :HDYEGHQRIQSKLNVPVQM T0284 214 :NPQLRDDARLARL 1mdl 246 :GENWLGPEEMFKA T0284 227 :GVRVVVNG 1mdl 262 :GACRLAMP T0284 237 :AYFAAIKATYDCLREE 1mdl 275 :GGVTGWIRASALAQQF Number of specific fragments extracted= 12 number of extra gaps= 1 total=2021 Number of alignments=139 # 1mdl read from 1mdl/merged-good-all-a2m # found chain 1mdl in template set Warning: unaligning (T0284)V80 because of BadResidue code BAD_PEPTIDE in next template residue (1mdl)A94 Warning: unaligning (T0284)A81 because of BadResidue code BAD_PEPTIDE at template residue (1mdl)A94 Warning: unaligning (T0284)A153 because of BadResidue code BAD_PEPTIDE in next template residue (1mdl)F190 Warning: unaligning (T0284)L154 because of BadResidue code BAD_PEPTIDE at template residue (1mdl)F190 T0284 5 :SHHELRAMFRALLDS 1mdl 58 :ALKSLKQLLDDMAAM T0284 20 :S 1mdl 75 :N T0284 63 :ALITLSEFVEQATRIGR 1mdl 76 :EPLAPVSLEAMLAKRFC T0284 82 :R 1mdl 95 :G T0284 87 :ADADHGYGNALNVMRTVVELERAGIAALTIEDTLL 1mdl 136 :AYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP T0284 134 :CVEEGVGKIRAALEAR 1mdl 171 :ALDQDLAVVRSIRQAV T0284 151 :DP 1mdl 187 :GD T0284 155 :TIIART 1mdl 191 :GIMVDY T0284 162 :AELIDVDAVIQRTLAYQEAGADGICLVG 1mdl 197 :NQSLDVPAAIKRSQALQQEGVTWIEEPT T0284 190 :VRDFAHLEAIAEHLHIPLMLV 1mdl 226 :QHDYEGHQRIQSKLNVPVQMG T0284 215 :PQLRDDARLARL 1mdl 247 :ENWLGPEEMFKA T0284 227 :GVRVVVNGHA 1mdl 262 :GACRLAMPDA T0284 241 :AIKATYDCLREERGAVAS 1mdl 276 :GVTGWIRASALAQQFGIP Number of specific fragments extracted= 13 number of extra gaps= 2 total=2034 Number of alignments=140 # 1mdl read from 1mdl/merged-good-all-a2m # found chain 1mdl in template set Warning: unaligning (T0284)S19 because of BadResidue code BAD_PEPTIDE in next template residue (1mdl)A94 Warning: unaligning (T0284)S20 because of BadResidue code BAD_PEPTIDE at template residue (1mdl)A94 Warning: unaligning (T0284)A153 because of BadResidue code BAD_PEPTIDE in next template residue (1mdl)F190 Warning: unaligning (T0284)L154 because of BadResidue code BAD_PEPTIDE at template residue (1mdl)F190 T0284 4 :ASHHELRAMFRALLD 1mdl 78 :LAPVSLEAMLAKRFC T0284 21 :RC 1mdl 95 :GY T0284 30 :DPMSARIA 1mdl 97 :TGLIRMAA T0284 48 :GGSVASLQ 1mdl 105 :AGIDMAAW T0284 56 :VLAAP 1mdl 118 :VHETP T0284 77 :IGRVARL 1mdl 123 :LVKLLGA T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1mdl 133 :PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPA T0284 135 :VEEGVGKIRAALEAR 1mdl 172 :LDQDLAVVRSIRQAV T0284 151 :DP 1mdl 187 :GD T0284 155 :TIIAR 1mdl 191 :GIMVD T0284 162 :AELI 1mdl 196 :YNQS T0284 166 :DVDAVIQRTLAYQEAGADGICLVGV 1mdl 201 :DVPAAIKRSQALQQEGVTWIEEPTL T0284 191 :RDFAHLEAIAEHLHIPLMLVT 1mdl 227 :HDYEGHQRIQSKLNVPVQMGE T0284 216 :QLRDDARLARL 1mdl 248 :NWLGPEEMFKA T0284 227 :GVRVVVN 1mdl 263 :ACRLAMP T0284 238 :YFAAIKATYDCLRE 1mdl 276 :GVTGWIRASALAQQ Number of specific fragments extracted= 16 number of extra gaps= 2 total=2050 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ad1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ad1A expands to /projects/compbio/data/pdb/1ad1.pdb.gz 1ad1A:# T0284 read from 1ad1A/merged-good-all-a2m # 1ad1A read from 1ad1A/merged-good-all-a2m # adding 1ad1A to template set # found chain 1ad1A in template set T0284 4 :ASHHELRAMFRALLDSS 1ad1A 24 :NNVESAVTRVKAMMDEG T0284 42 :FECGILGGS 1ad1A 41 :ADIIDVGGV T0284 57 :LAAPDFALITLSEFVEQATRIGR 1ad1A 50 :STRPGHEMITVEEELNRVLPVVE T0284 81 :A 1ad1A 75 :V T0284 82 :RLPVIADADH 1ad1A 78 :DVKISVDTFR T0284 100 :MRTVVELERAGIAALTIEDTLL 1ad1A 88 :SEVAEACLKLGVDIINDQWAGL T0284 126 :GR 1ad1A 110 :YD T0284 140 :GKIRAALE 1ad1A 113 :RMFQVVAK T0284 152 :PALTIIARTNAEL 1ad1A 121 :YDAEIVLMHNGNG T0284 167 :VDAVIQRTLAYQEAGAD 1ad1A 144 :LTSLLAQAHQAKIAGIP T0284 184 :GICLV 1ad1A 165 :WLDPG T0284 189 :GVRDFAHLEAIAEHLH 1ad1A 172 :FAKTRNEEAEVMARLD T0284 205 :IPLML 1ad1A 194 :YPVLL T0284 214 :NPQLRDD 1ad1A 199 :ATSRKRF T0284 221 :ARLARLGVRVVVNGHA 1ad1A 228 :AYGIMKGVRAVRVHNV T0284 243 :KATYDCLREERGAVASD 1ad1A 244 :ELNAKLAKGIDFLKENE T0284 263 :SE 1ad1A 261 :NA Number of specific fragments extracted= 17 number of extra gaps= 0 total=2067 Number of alignments=142 # 1ad1A read from 1ad1A/merged-good-all-a2m # found chain 1ad1A in template set Warning: unaligning (T0284)K286 because last residue in template chain is (1ad1A)N265 T0284 5 :SHHELRAMFRALLDSS 1ad1A 25 :NVESAVTRVKAMMDEG T0284 42 :FECGILGGS 1ad1A 41 :ADIIDVGGV T0284 57 :LAAPDFALITLSEFVEQATRIGR 1ad1A 50 :STRPGHEMITVEEELNRVLPVVE T0284 80 :VARLPVIADADHG 1ad1A 76 :GFDVKISVDTFRS T0284 101 :RTVVELERAGIAALTIEDTLL 1ad1A 89 :EVAEACLKLGVDIINDQWAGL T0284 125 :FG 1ad1A 110 :YD T0284 136 :EEGVGKIRA 1ad1A 112 :HRMFQVVAK T0284 152 :PA 1ad1A 121 :YD T0284 154 :LTIIARTNAELID 1ad1A 124 :EIVLMHNGNGNRD T0284 167 :VDAVIQRTLAYQEAGA 1ad1A 144 :LTSLLAQAHQAKIAGI T0284 184 :GICLVG 1ad1A 164 :IWLDPG T0284 190 :VRDFAHLEAIAE 1ad1A 173 :AKTRNEEAEVMA T0284 202 :HLHIPLMLVT 1ad1A 191 :ATEYPVLLAT T0284 212 :YGNPQLRDDARLARL 1ad1A 212 :YDTTPVERDEVTAAT T0284 227 :GVRVVVNGHA 1ad1A 234 :GVRAVRVHNV T0284 243 :KATYDCLREE 1ad1A 244 :ELNAKLAKGI T0284 275 :YQAWARDYMEV 1ad1A 254 :DFLKENENARH Number of specific fragments extracted= 17 number of extra gaps= 0 total=2084 Number of alignments=143 # 1ad1A read from 1ad1A/merged-good-all-a2m # found chain 1ad1A in template set Warning: unaligning (T0284)A257 because last residue in template chain is (1ad1A)N265 T0284 3 :RASHHELRAMFRALL 1ad1A 23 :FNNVESAVTRVKAMM T0284 39 :DLGFECGILGGS 1ad1A 38 :DEGADIIDVGGV T0284 57 :LAAPDFALITLSEFVEQATRIGRVA 1ad1A 50 :STRPGHEMITVEEELNRVLPVVEAI T0284 82 :RLPVIADADH 1ad1A 78 :DVKISVDTFR T0284 100 :MRTVVELERAGIAALT 1ad1A 88 :SEVAEACLKLGVDIIN T0284 118 :DT 1ad1A 104 :DQ T0284 124 :QFGRKST 1ad1A 106 :WAGLYDH T0284 137 :EGVGKIRA 1ad1A 113 :RMFQVVAK T0284 152 :PALTIIARTNAEL 1ad1A 121 :YDAEIVLMHNGNG T0284 167 :VDAVIQRTLAYQEAGAD 1ad1A 144 :LTSLLAQAHQAKIAGIP T0284 184 :GICLVGVRD 1ad1A 164 :IWLDPGIGF T0284 193 :FAHLEAIAE 1ad1A 176 :RNEEAEVMA T0284 202 :HLHIPLMLVTY 1ad1A 191 :ATEYPVLLATS T0284 213 :GNPQLRDDARLA 1ad1A 213 :DTTPVERDEVTA T0284 225 :RLGVRVVVNG 1ad1A 232 :MKGVRAVRVH T0284 235 :HAAYFAAIKATYDCLREERGAV 1ad1A 243 :VELNAKLAKGIDFLKENENARH Number of specific fragments extracted= 16 number of extra gaps= 0 total=2100 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yxyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yxyA expands to /projects/compbio/data/pdb/1yxy.pdb.gz 1yxyA:# T0284 read from 1yxyA/merged-good-all-a2m # 1yxyA read from 1yxyA/merged-good-all-a2m # adding 1yxyA to template set # found chain 1yxyA in template set Warning: unaligning (T0284)R3 because first residue in template chain is (1yxyA)K4 T0284 4 :ASHHELRAMF 1yxyA 5 :PTKEKLMEQL T0284 19 :SSRCYHTASV 1yxyA 15 :KGGIIVSCQA T0284 31 :PMSARIAADLGFECGILGG 1yxyA 39 :PLMAKAAQEAGAVGIRANS T0284 71 :VEQATRIGRVARLPVIADADHGYG 1yxyA 58 :VRDIKEIQAITDLPIIGIIKKDYP T0284 95 :N 1yxyA 84 :E T0284 100 :MRTVVELERAGIAALTIEDTLLPAQ 1yxyA 91 :MTEVDQLAALNIAVIAMDCTKRDRH T0284 127 :RKS 1yxyA 116 :DGL T0284 137 :EGVGKIRAALEAR 1yxyA 119 :DIASFIRQVKEKY T0284 152 :PALTIIARTNAE 1yxyA 132 :PNQLLMADISTF T0284 168 :D 1yxyA 144 :D T0284 173 :RTLAYQEAGADGICLV 1yxyA 145 :EGLVAHQAGIDFVGTT T0284 191 :RDFAHLEAIAEH 1yxyA 174 :PDVALIEALCKA T0284 204 :HIPL 1yxyA 186 :GIAV T0284 210 :VTYGN 1yxyA 190 :IAEGK T0284 217 :LRDDARLAR 1yxyA 195 :IHSPEEAKK T0284 226 :LGVRVVVNGHAAYFA 1yxyA 207 :LGVAGIVVGGAITRP T0284 243 :KATYDCLRE 1yxyA 222 :KEIAERFIE Number of specific fragments extracted= 17 number of extra gaps= 0 total=2117 Number of alignments=145 # 1yxyA read from 1yxyA/merged-good-all-a2m # found chain 1yxyA in template set Warning: unaligning (T0284)R3 because first residue in template chain is (1yxyA)K4 Warning: unaligning (T0284)E284 because last residue in template chain is (1yxyA)K233 T0284 4 :ASHHELRAMF 1yxyA 5 :PTKEKLMEQL T0284 19 :SSRCYHTASV 1yxyA 15 :KGGIIVSCQA T0284 29 :FDPMSARIAADLGFECGILGG 1yxyA 37 :IMPLMAKAAQEAGAVGIRANS T0284 71 :VEQATRIGRVARLPVIADADHGY 1yxyA 58 :VRDIKEIQAITDLPIIGIIKKDY T0284 94 :GNALN 1yxyA 89 :ATMTE T0284 103 :VVELERAGIAALTIEDTLLP 1yxyA 94 :VDQLAALNIAVIAMDCTKRD T0284 126 :GRKST 1yxyA 114 :RHDGL T0284 137 :EGVGKIRAALEA 1yxyA 119 :DIASFIRQVKEK T0284 151 :DPALTIIARTNAE 1yxyA 131 :YPNQLLMADISTF T0284 172 :QRTLAYQEAGADGICL 1yxyA 144 :DEGLVAHQAGIDFVGT T0284 192 :DFAHLEAIAEH 1yxyA 175 :DVALIEALCKA T0284 204 :HIPL 1yxyA 186 :GIAV T0284 209 :LVTYGNPQLRDDARLARLGVRVVVNGHAAY 1yxyA 190 :IAEGKIHSPEEAKKINDLGVAGIVVGGAIT T0284 271 :FPEEYQAWARDYM 1yxyA 220 :RPKEIAERFIEAL Number of specific fragments extracted= 14 number of extra gaps= 0 total=2131 Number of alignments=146 # 1yxyA read from 1yxyA/merged-good-all-a2m # found chain 1yxyA in template set Warning: unaligning (T0284)R3 because first residue in template chain is (1yxyA)K4 T0284 4 :ASHHELRAMF 1yxyA 5 :PTKEKLMEQL T0284 19 :SSRCYHTASVF 1yxyA 15 :KGGIIVSCQAL T0284 31 :PMSARIAADLGFECGILGG 1yxyA 39 :PLMAKAAQEAGAVGIRANS T0284 71 :VEQATRIGRVARLPVIADADHGYG 1yxyA 58 :VRDIKEIQAITDLPIIGIIKKDYP T0284 95 :N 1yxyA 84 :E T0284 100 :MRTVVELERAGIAALTIEDTLLPAQFGR 1yxyA 91 :MTEVDQLAALNIAVIAMDCTKRDRHDGL T0284 134 :C 1yxyA 119 :D T0284 138 :GVGKIRAALEAR 1yxyA 120 :IASFIRQVKEKY T0284 152 :PALTIIARTNAE 1yxyA 132 :PNQLLMADISTF T0284 172 :QRTLAYQEAGADGICLVGVRD 1yxyA 144 :DEGLVAHQAGIDFVGTTLSGY T0284 193 :FAHLEAIAEH 1yxyA 176 :VALIEALCKA T0284 204 :HIPLMLV 1yxyA 186 :GIAVIAE T0284 213 :G 1yxyA 193 :G T0284 216 :QLRDDAR 1yxyA 194 :KIHSPEE T0284 223 :LARLGVRVVVNGHAAYFAAIKATYD 1yxyA 204 :INDLGVAGIVVGGAITRPKEIAERF Number of specific fragments extracted= 15 number of extra gaps= 0 total=2146 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dquA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dquA expands to /projects/compbio/data/pdb/1dqu.pdb.gz 1dquA:# T0284 read from 1dquA/merged-good-all-a2m # 1dquA read from 1dquA/merged-good-all-a2m # adding 1dquA to template set # found chain 1dquA in template set Warning: unaligning (T0284)A123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dquA)G211 Warning: unaligning (T0284)S129 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dquA)G211 T0284 7 :HELRAMFRALLDSSRCYHTASVFDPMSARIAADL 1dquA 57 :KKLWGILERNFKNKEASFTYGCLDPTMVTQMAKY T0284 42 :FECGILGGSVASLQVLA 1dquA 91 :LDTVYVSGWQSSSTASS T0284 59 :APDFALITLSEFVEQATRIGRV 1dquA 112 :SPDLADYPMNTVPNKVNHLWMA T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1dquA 164 :PIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPG T0284 130 :TDLICVEEGVGKIRAALEAR 1dquA 212 :KVLVPISEHINRLVAIRAQA T0284 150 :VDPALTIIARTNAELI 1dquA 234 :MGTDLLAIARTDSEAA T0284 166 :DVDAVIQRTLAYQEA 1dquA 374 :GTQCAINRAVAYAPF T0284 182 :ADGICLV 1dquA 389 :ADLIWME T0284 189 :GVRDFAHLEAIAEHLH 1dquA 397 :KLPDYKQAKEFADGVH T0284 205 :IPLMLVTYGNPQLRDD 1dquA 415 :WPEQKLAYNLSPSFNW T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1dquA 444 :KRLGALGYAWQFITLAGLHTTALISDTFAKAYAK T0284 255 :AVASDLTASELSKKYTF 1dquA 482 :AYGELVQEPEMANGVDV T0284 278 :WARDYME 1dquA 499 :VTHQKWS Number of specific fragments extracted= 13 number of extra gaps= 0 total=2159 Number of alignments=148 # 1dquA read from 1dquA/merged-good-all-a2m # found chain 1dquA in template set Warning: unaligning (T0284)A123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dquA)G211 Warning: unaligning (T0284)S129 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dquA)G211 T0284 7 :HELRAMFRALLDSSRCYHTASVFDPMSARIAAD 1dquA 57 :KKLWGILERNFKNKEASFTYGCLDPTMVTQMAK T0284 41 :GFECGILGGSVASLQVLA 1dquA 90 :YLDTVYVSGWQSSSTASS T0284 59 :APDFALITLSEFVEQATRIGRVA 1dquA 112 :SPDLADYPMNTVPNKVNHLWMAQ T0284 83 :LPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1dquA 163 :RPIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPG T0284 130 :TDLICVEEGVGKIRAALEA 1dquA 212 :KVLVPISEHINRLVAIRAQ T0284 149 :RVDPALTIIARTNAELIDV 1dquA 233 :IMGTDLLAIARTDSEAATL T0284 168 :DAVIQRTLAYQEA 1dquA 376 :QCAINRAVAYAPF T0284 182 :ADGICLVG 1dquA 389 :ADLIWMES T0284 190 :VRDFAHLEAIAEHL 1dquA 398 :LPDYKQAKEFADGV T0284 204 :HI 1dquA 417 :EQ T0284 209 :LVTYGNPQLRDDA 1dquA 419 :KLAYNLSPSFNWK T0284 222 :RLARLGVRVVVNGHAAYFAAIK 1dquA 445 :RLGALGYAWQFITLAGLHTTAL T0284 253 :RGA 1dquA 467 :ISD T0284 261 :TASELSKKYTFPEEYQAWARDYMEVK 1dquA 470 :TFAKAYAKQGMRAYGELVQEPEMANG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2173 Number of alignments=149 # 1dquA read from 1dquA/merged-good-all-a2m # found chain 1dquA in template set Warning: unaligning (T0284)A123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dquA)G211 Warning: unaligning (T0284)T130 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dquA)G211 T0284 4 :ASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADL 1dquA 54 :VQAKKLWGILERNFKNKEASFTYGCLDPTMVTQMAKY T0284 42 :FECGILGGSVASLQV 1dquA 91 :LDTVYVSGWQSSSTA T0284 57 :LAAPDFALITLSEFVEQATRIGRVA 1dquA 110 :EPSPDLADYPMNTVPNKVNHLWMAQ T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1dquA 164 :PIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPG T0284 131 :D 1dquA 212 :K T0284 132 :LICVEEGVGKIRAAL 1dquA 214 :LVPISEHINRLVAIR T0284 147 :EARVDPALTIIARTNAELI 1dquA 231 :ADIMGTDLLAIARTDSEAA T0284 167 :VDAVIQRTLAYQ 1dquA 375 :TQCAINRAVAYA T0284 182 :ADGICLVGVRD 1dquA 389 :ADLIWMESKLP T0284 193 :FAHLEAIAEHL 1dquA 401 :YKQAKEFADGV T0284 204 :HIPLMLVTYGN 1dquA 417 :EQKLAYNLSPS T0284 215 :PQLRDDAR 1dquA 431 :KKAMPRDE T0284 223 :LARLGVRVVVNGHAAYFAAIKATYDCLREERGAV 1dquA 446 :LGALGYAWQFITLAGLHTTALISDTFAKAYAKQG T0284 259 :DLTASELSKKYTFP 1dquA 480 :MRAYGELVQEPEMA Number of specific fragments extracted= 14 number of extra gaps= 0 total=2187 Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vhnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1vhnA/merged-good-all-a2m # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set Warning: unaligning (T0284)K286 because last residue in template chain is (1vhnA)E309 T0284 20 :SRCYHTASVFDP 1vhnA 59 :RNVAVQIFGSEP T0284 32 :MSARIAADL 1vhnA 72 :ELSEAARIL T0284 41 :GFECGILG 1vhnA 83 :KYKWIDLN T0284 49 :GSVAS 1vhnA 92 :GCPVR T0284 54 :LQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1vhnA 98 :VVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWE T0284 95 :N 1vhnA 141 :E T0284 99 :VMRTVVELERAGIAALTIEDTLLPAQFGRKST 1vhnA 142 :VEEIYRILVEEGVDEVFIHTRTVVQSFTGRAE T0284 135 :VEE 1vhnA 174 :WKA T0284 147 :EARVDPALTIIARTNAEL 1vhnA 177 :LSVLEKRIPTFVSGDIFT T0284 167 :VDAVIQ 1vhnA 195 :PEDAKR T0284 176 :AYQEAGADGICLV 1vhnA 201 :ALEESGCDGLLVA T0284 189 :GVRD 1vhnA 218 :GRPW T0284 195 :HLEAIAEHLH 1vhnA 222 :IFKQIKDFLR T0284 213 :GNPQLRDDARLA 1vhnA 233 :GKYSEPSREEIL T0284 243 :KATYDCLREERG 1vhnA 245 :RTFERHLELLIK T0284 257 :ASDLT 1vhnA 279 :KGARR T0284 262 :ASELSKKYTFPEEYQAWARDYMEV 1vhnA 285 :REKVMKIEEVQILKEMFYNFIKEV Number of specific fragments extracted= 17 number of extra gaps= 0 total=2204 Number of alignments=151 # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set Warning: unaligning (T0284)K286 because last residue in template chain is (1vhnA)E309 T0284 20 :SRCYHTASVFDPMSARIAADL 1vhnA 59 :RNVAVQIFGSEPNELSEAARI T0284 41 :GFE 1vhnA 83 :KYK T0284 44 :CGILGGSV 1vhnA 87 :IDLNAGCP T0284 54 :LQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1vhnA 98 :VVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWE T0284 95 :NALNVMR 1vhnA 141 :EVEEIYR T0284 105 :ELERAGIAALTIEDTLL 1vhnA 148 :ILVEEGVDEVFIHTRTV T0284 124 :QFGRKSTD 1vhnA 165 :VQSFTGRA T0284 134 :CVEEG 1vhnA 173 :EWKAL T0284 146 :LEARVDPALTIIA 1vhnA 178 :SVLEKRIPTFVSG T0284 161 :NA 1vhnA 191 :DI T0284 165 :IDVDAVIQRTL 1vhnA 193 :FTPEDAKRALE T0284 179 :EAGADGICLV 1vhnA 204 :ESGCDGLLVA T0284 190 :VR 1vhnA 219 :RP T0284 195 :HLEAIAEHL 1vhnA 222 :IFKQIKDFL T0284 213 :GNPQLRDDARLAR 1vhnA 233 :GKYSEPSREEILR T0284 244 :ATYDCLREERGAVAS 1vhnA 246 :TFERHLELLIKTKGE T0284 259 :DL 1vhnA 277 :DL T0284 261 :TASELSKKY 1vhnA 280 :GARRFREKV T0284 270 :TFPEEYQAWARDYMEV 1vhnA 293 :EVQILKEMFYNFIKEV Number of specific fragments extracted= 19 number of extra gaps= 0 total=2223 Number of alignments=152 # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set T0284 18 :DSSRCYHTASVFDPMSARIAADL 1vhnA 57 :HERNVAVQIFGSEPNELSEAARI T0284 41 :GFECGILGGSV 1vhnA 83 :KYKWIDLNAGC T0284 53 :SLQ 1vhnA 98 :VVK T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1vhnA 101 :EGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWE T0284 98 :NVMRTVVELERAGIAALTIEDTLLPA 1vhnA 141 :EVEEIYRILVEEGVDEVFIHTRTVVQ T0284 126 :GRKSTD 1vhnA 167 :SFTGRA T0284 147 :EARVDPALTIIA 1vhnA 179 :VLEKRIPTFVSG T0284 163 :ELIDVDAVIQRT 1vhnA 191 :DIFTPEDAKRAL T0284 178 :QEAGADGICLV 1vhnA 203 :EESGCDGLLVA T0284 189 :GVRDFAHLEAIAEHL 1vhnA 216 :AIGRPWIFKQIKDFL T0284 213 :GNPQLRDDARLAR 1vhnA 233 :GKYSEPSREEILR T0284 241 :AIKATYDCLREERGA 1vhnA 246 :TFERHLELLIKTKGE T0284 256 :VASDLTASELSKKYTFPEEYQAWARDYME 1vhnA 279 :KGARRFREKVMKIEEVQILKEMFYNFIKE Number of specific fragments extracted= 13 number of extra gaps= 0 total=2236 Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fdyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fdyA expands to /projects/compbio/data/pdb/1fdy.pdb.gz 1fdyA:# T0284 read from 1fdyA/merged-good-all-a2m # 1fdyA read from 1fdyA/merged-good-all-a2m # adding 1fdyA to template set # found chain 1fdyA in template set T0284 31 :PMSARIAADLGFECGILGGSVASLQ 1fdyA 28 :RRLVQFNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGRVA 1fdyA 53 :VQSLSEREQVLEIVAEEG T0284 82 :RLPVIADA 1fdyA 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTL 1fdyA 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPF T0284 126 :GRKS 1fdyA 110 :YYPF T0284 134 :CVEEGVGKIRAALEAR 1fdyA 114 :SFEEHCDHYRAIIDSA T0284 152 :PALTIIARTNAELID 1fdyA 130 :DGLPMVVYNIPALSG T0284 167 :VDAV 1fdyA 149 :LDQI T0284 175 :LAYQEA 1fdyA 153 :NTLVTL T0284 181 :GADGICLVGVR 1fdyA 160 :GVGALKQTSGD T0284 193 :FAHLEAIAEHLH 1fdyA 171 :LYQMEQIRREHP T0284 205 :I 1fdyA 184 :L T0284 207 :L 1fdyA 185 :V T0284 210 :VTYGNPQLR 1fdyA 186 :LYNGYDEIF T0284 221 :ARLARLGVRVVVNGHAAYFA 1fdyA 195 :ASGLLAGADGGIGSTYNIMG T0284 243 :KATYDCLREERG 1fdyA 215 :WRYQGIVKALKE T0284 255 :AVASDLTASEL 1fdyA 231 :TAQKLQTECNK Number of specific fragments extracted= 17 number of extra gaps= 0 total=2253 Number of alignments=154 # 1fdyA read from 1fdyA/merged-good-all-a2m # found chain 1fdyA in template set T0284 10 :RAMFRAL 1fdyA 24 :KASLRRL T0284 34 :ARIAADLGFECGILGGSVASL 1fdyA 31 :VQFNIQQGIDGLYVGGSTGEA T0284 63 :ALITLSEFVEQATRIGR 1fdyA 52 :FVQSLSEREQVLEIVAE T0284 80 :VARLPVIADA 1fdyA 71 :KGKIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLL 1fdyA 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFY T0284 127 :RK 1fdyA 111 :YP T0284 133 :ICVEEGVGKIRAALEAR 1fdyA 113 :FSFEEHCDHYRAIIDSA T0284 152 :PA 1fdyA 130 :DG T0284 154 :LTIIARTNAELI 1fdyA 133 :PMVVYNIPALSG T0284 166 :DVDAV 1fdyA 148 :TLDQI T0284 175 :LAYQEA 1fdyA 153 :NTLVTL T0284 181 :GADGICLVGV 1fdyA 160 :GVGALKQTSG T0284 192 :DFAHLEAIAEHLH 1fdyA 170 :DLYQMEQIRREHP T0284 205 :IPLM 1fdyA 184 :LVLY T0284 210 :V 1fdyA 188 :N T0284 213 :GNPQL 1fdyA 189 :GYDEI T0284 223 :LARL 1fdyA 194 :FASG T0284 227 :GVRVVVNGHAAYFA 1fdyA 201 :GADGGIGSTYNIMG T0284 243 :KATYDCLREERGA 1fdyA 215 :WRYQGIVKALKEG T0284 261 :TASELSKKY 1fdyA 228 :DIQTAQKLQ T0284 272 :PEEYQAWARDY 1fdyA 237 :TECNKVIDLLI Number of specific fragments extracted= 21 number of extra gaps= 0 total=2274 Number of alignments=155 # 1fdyA read from 1fdyA/merged-good-all-a2m # found chain 1fdyA in template set T0284 5 :SHHELRAMFRA 1fdyA 22 :LDKASLRRLVQ T0284 36 :IAADLGFECGILGGSVASLQ 1fdyA 33 :FNIQQGIDGLYVGGSTGEAF T0284 64 :LITLSEFVEQATRIGRVA 1fdyA 53 :VQSLSEREQVLEIVAEEG T0284 82 :RLPVIADA 1fdyA 73 :KIKLIAHV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1fdyA 81 :GCVTTAESQQLAASAKRYGFDAVSAVTPFYYP T0284 133 :ICVEEGVGKIRAALEARVDPALTII 1fdyA 113 :FSFEEHCDHYRAIIDSADGLPMVVY T0284 159 :RTNAELI 1fdyA 138 :NIPALSG T0284 166 :DVD 1fdyA 148 :TLD T0284 173 :RTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1fdyA 151 :QINTLVTLPGVGALKQTSGDLYQMEQIRREHPDLVLYNGYDEI T0284 220 :DARLARLGVRVVVNGHAAYFAAIKATYDCLR 1fdyA 195 :ASGLLAGADGGIGSTYNIMGWRYQGIVKALK T0284 255 :AVASDLTASELSKKYTFPEEYQAWARD 1fdyA 226 :EGDIQTAQKLQTECNKVIDLLIKTGVF Number of specific fragments extracted= 11 number of extra gaps= 0 total=2285 Number of alignments=156 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f74A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1f74A/merged-good-all-a2m # 1f74A read from 1f74A/merged-good-all-a2m # found chain 1f74A in training set T0284 22 :CYHTASV 1f74A 7 :IFSALLV T0284 29 :FDPMSARIAADL 1f74A 21 :INEKGLRQIIRH T0284 41 :GFECGILGGSVASLQ 1f74A 38 :KVDGLYVGGSTGENF T0284 64 :LITLSEFVEQATRIGR 1f74A 53 :MLSTEEKKEIFRIAKD T0284 80 :VA 1f74A 70 :AK T0284 82 :RLPVIADAD 1f74A 73 :QIALIAQVG T0284 93 :YGNALNVMRTVVELERAGIAALTIEDTLLPA 1f74A 82 :SVNLKEAVELGKYATELGYDCLSAVTPFYYK T0284 133 :ICVEEGVGKIRAALEAR 1f74A 113 :FSFPEIKHYYDTIIAET T0284 153 :ALTIIARTNAELIDVDAVIQRTLAYQEA 1f74A 130 :GSNMIVYSIPFLTGVNMGIEQFGELYKN T0284 181 :GADGICLVGVR 1f74A 159 :KVLGVKFTAGD T0284 193 :FAHLEAIAEHLH 1f74A 170 :FYLLERLKKAYP T0284 205 :IP 1f74A 183 :HL T0284 210 :VTYGNPQLR 1f74A 185 :IWAGFDEMM T0284 221 :ARLARLGVRVVVNGHAAYFA 1f74A 194 :LPAASLGVDGAIGSTFNVNG T0284 243 :KATYDCLREERG 1f74A 214 :VRARQIFELTKA T0284 262 :ASEL 1f74A 234 :IQHV T0284 274 :EYQAWARD 1f74A 238 :TNDLIEGI Number of specific fragments extracted= 17 number of extra gaps= 0 total=2302 Number of alignments=157 # 1f74A read from 1f74A/merged-good-all-a2m # found chain 1f74A in training set T0284 21 :RCYHTASV 1f74A 6 :GIFSALLV T0284 29 :FDPMSARIAADL 1f74A 21 :INEKGLRQIIRH T0284 41 :GFECGILGGS 1f74A 38 :KVDGLYVGGS T0284 52 :ASLQ 1f74A 48 :TGEN T0284 63 :ALITLSEFVEQATRIGR 1f74A 52 :FMLSTEEKKEIFRIAKD T0284 80 :VARLPVIADADH 1f74A 71 :KDQIALIAQVGS T0284 95 :NALNVMRTVVELERAGIAALTIEDT 1f74A 84 :NLKEAVELGKYATELGYDCLSAVTP T0284 127 :RKST 1f74A 109 :FYYK T0284 133 :ICVEEGVGKIRAALEAR 1f74A 113 :FSFPEIKHYYDTIIAET T0284 153 :ALTIIARTNAELIDVDAVIQRTLAYQEAG 1f74A 130 :GSNMIVYSIPFLTGVNMGIEQFGELYKNP T0284 182 :ADGICLVGVR 1f74A 160 :VLGVKFTAGD T0284 193 :FAHLEAIAEHLH 1f74A 170 :FYLLERLKKAYP T0284 205 :IP 1f74A 183 :HL T0284 208 :MLVT 1f74A 185 :IWAG T0284 214 :NPQ 1f74A 189 :FDE T0284 219 :DDARLARLGVRVVVNGHAAYFA 1f74A 192 :MMLPAASLGVDGAIGSTFNVNG T0284 243 :KATYDCLREERGA 1f74A 214 :VRARQIFELTKAG T0284 261 :TASELSKKY 1f74A 227 :KLKEALEIQ T0284 272 :PEEYQAWARDYM 1f74A 236 :HVTNDLIEGILA Number of specific fragments extracted= 19 number of extra gaps= 0 total=2321 Number of alignments=158 # 1f74A read from 1f74A/merged-good-all-a2m # found chain 1f74A in training set T0284 21 :RCYHTASV 1f74A 6 :GIFSALLV T0284 29 :FDPMSARIAADL 1f74A 21 :INEKGLRQIIRH T0284 41 :GFECGILGGSVASLQ 1f74A 38 :KVDGLYVGGSTGENF T0284 64 :LITLSEFVEQATRIGRVA 1f74A 53 :MLSTEEKKEIFRIAKDEA T0284 82 :RLPVIADA 1f74A 73 :QIALIAQV T0284 92 :GYGNALNVMRTVVELERAGIAALTIEDTLLPA 1f74A 81 :GSVNLKEAVELGKYATELGYDCLSAVTPFYYK T0284 133 :ICVEEGVGKIRAALEAR 1f74A 113 :FSFPEIKHYYDTIIAET T0284 151 :DPALTIIA 1f74A 130 :GSNMIVYS T0284 161 :NAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNP 1f74A 138 :IPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIWAGFDEM T0284 222 :RLARLGVRVVVNGHAA 1f74A 195 :PAASLGVDGAIGSTFN T0284 240 :AAIKATYDCLREERGA 1f74A 211 :VNGVRARQIFELTKAG T0284 257 :ASDLTASELSKKYTFPEEYQAWARD 1f74A 227 :KLKEALEIQHVTNDLIEGILANGLY Number of specific fragments extracted= 12 number of extra gaps= 0 total=2333 Number of alignments=159 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xm3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0284 read from 1xm3A/merged-good-all-a2m # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set Warning: unaligning (T0284)F62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xm3A)L58 T0284 21 :RCYHTASVFD 1xm3A 12 :QSRLLLGTGK T0284 31 :PMSARIAADLGFECGILG 1xm3A 26 :DIQKEAVAVSESDILTFA T0284 56 :VLAAPD 1xm3A 44 :VRRMNI T0284 84 :PVIADA 1xm3A 67 :TLLPNT T0284 91 :HGYGNALNVMRTVVELERAG 1xm3A 73 :AGASTAEEAVRIARLAKASG T0284 111 :IAALTIED 1xm3A 94 :CDMIKVEV T0284 125 :FGRKSTDLI 1xm3A 102 :IGCSRSLLP T0284 137 :EGVGKIRAALEAR 1xm3A 111 :DPVETLKASEQLL T0284 152 :PALTIIARTNAELI 1xm3A 125 :EGFIVLPYTSDDVV T0284 173 :RTLAYQEAGADGICLVGVR 1xm3A 139 :LARKLEELGVHAIMPGASP T0284 192 :DFAHLEAIAEHLHIPLM 1xm3A 166 :NPLNLSFIIEQAKVPVI T0284 210 :VTYGNPQLRDDARLARLGVRVVVNG 1xm3A 183 :VDAGIGSPKDAAYAMELGADGVLLN T0284 245 :TYDCLREERGAVASDLTASELSKKYTFP 1xm3A 216 :PVKMARAMKLAVEAGRLSYEAGRIPLKQ Number of specific fragments extracted= 13 number of extra gaps= 0 total=2346 Number of alignments=160 # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set Warning: unaligning (T0284)F62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xm3A)L58 T0284 21 :RCYHTASVFDP 1xm3A 12 :QSRLLLGTGKY T0284 32 :MSARIAADLGFECGILG 1xm3A 27 :IQKEAVAVSESDILTFA T0284 56 :VLAAPD 1xm3A 44 :VRRMNI T0284 83 :LPVIADA 1xm3A 66 :YTLLPNT T0284 91 :HGYGNALNVMRTVVELERAG 1xm3A 73 :AGASTAEEAVRIARLAKASG T0284 111 :IAALTIED 1xm3A 94 :CDMIKVEV T0284 125 :FGRKSTDLICVEEGVGKIRAALE 1xm3A 102 :IGCSRSLLPDPVETLKASEQLLE T0284 152 :PALTIIARTNAEL 1xm3A 125 :EGFIVLPYTSDDV T0284 172 :QRTLAYQEAGADGICLVGVR 1xm3A 138 :VLARKLEELGVHAIMPGASP T0284 192 :DFAHLEAIAEHLHIPLMLVT 1xm3A 166 :NPLNLSFIIEQAKVPVIVDA T0284 213 :GNPQLRDDARLARLGVRVVVNGHAA 1xm3A 186 :GIGSPKDAAYAMELGADGVLLNTAV T0284 238 :YFAAIKATYDCLREERGAVAS 1xm3A 220 :ARAMKLAVEAGRLSYEAGRIP Number of specific fragments extracted= 12 number of extra gaps= 0 total=2358 Number of alignments=161 # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set Warning: unaligning (T0284)L57 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xm3A)L58 T0284 22 :CYHTASVFD 1xm3A 13 :SRLLLGTGK T0284 32 :MSARIAADLGFECGILG 1xm3A 27 :IQKEAVAVSESDILTFA T0284 58 :AAPDFALI 1xm3A 59 :EQLDLSKY T0284 85 :VIADADHGYGNALNVMRTVVELERAG 1xm3A 67 :TLLPNTAGASTAEEAVRIARLAKASG T0284 111 :IAALTIEDTLLP 1xm3A 94 :CDMIKVEVIGCS T0284 129 :STDLICVEEGVGKIRAALE 1xm3A 106 :RSLLPDPVETLKASEQLLE T0284 152 :PALTIIARTNAE 1xm3A 125 :EGFIVLPYTSDD T0284 171 :IQRTLAYQEAGADGICL 1xm3A 137 :VVLARKLEELGVHAIMP T0284 188 :VGVRDFAHLEAIAEHLHIPLMLVTYG 1xm3A 162 :QGILNPLNLSFIIEQAKVPVIVDAGI T0284 218 :RDDARLA 1xm3A 188 :GSPKDAA T0284 225 :RLGVRVVVN 1xm3A 198 :ELGADGVLL T0284 234 :GHAAYFAAIKATYDCLREERGAV 1xm3A 216 :PVKMARAMKLAVEAGRLSYEAGR Number of specific fragments extracted= 12 number of extra gaps= 0 total=2370 Number of alignments=162 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ep3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ep3A expands to /projects/compbio/data/pdb/1ep3.pdb.gz 1ep3A:# T0284 read from 1ep3A/merged-good-all-a2m # 1ep3A read from 1ep3A/merged-good-all-a2m # adding 1ep3A to template set # found chain 1ep3A in template set Warning: unaligning (T0284)I116 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0284)E117 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0284 7 :HELRA 1ep3A 82 :EVIMT T0284 12 :MFRALLD 1ep3A 88 :KLPWLNE T0284 19 :SSRCYHTASVFD 1ep3A 97 :PELPIIANVAGS T0284 31 :PMSARIAADLG 1ep3A 111 :ADYVAVCAKIG T0284 42 :FECGIL 1ep3A 126 :VKAIEL T0284 49 :GSVASLQVLA 1ep3A 132 :NISCPNVKHG T0284 60 :PDFALITLSEFVEQATRIGRVARLPVIADADHGYGNA 1ep3A 142 :GQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDI T0284 100 :MRTVVELERAGIAALT 1ep3A 179 :VPIAKAVEAAGADGLT T0284 118 :DTLL 1ep3A 197 :NTLM T0284 123 :AQFGR 1ep3A 201 :GVRFD T0284 128 :KSTD 1ep3A 208 :TRQP T0284 148 :A 1ep3A 213 :L T0284 153 :ALTIIARTNAELI 1ep3A 214 :ANITGGLSGPAIK T0284 168 :DAVI 1ep3A 227 :PVAL T0284 194 :AHLEAIAEHLHIPL 1ep3A 231 :KLIHQVAQDVDIPI T0284 210 :VTYG 1ep3A 245 :IGMG T0284 216 :QLRDDARLARL 1ep3A 249 :GVANAQDVLEM T0284 227 :GVRVVVNGHAAYF 1ep3A 263 :GASAVAVGTANFA T0284 243 :KATYDCLREERGAVASD 1ep3A 278 :FVCPKIIDKLPELMDQY T0284 270 :TFPEEYQAWARDYM 1ep3A 295 :RIESLESLIQEVKE Number of specific fragments extracted= 20 number of extra gaps= 1 total=2390 Number of alignments=163 # 1ep3A read from 1ep3A/merged-good-all-a2m # found chain 1ep3A in template set Warning: unaligning (T0284)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0284 63 :ALITLSEFVE 1ep3A 77 :QNPGLEVIMT T0284 73 :QATRIGR 1ep3A 88 :KLPWLNE T0284 80 :VARLPVIADADH 1ep3A 96 :FPELPIIANVAG T0284 94 :GNALNVMRTVVELERAG 1ep3A 108 :SEEADYVAVCAKIGDAA T0284 111 :IAALTIEDTLLPAQFGR 1ep3A 126 :VKAIELNISCPNVKHGG T0284 129 :S 1ep3A 144 :A T0284 134 :CVEEGVGKIRAALEA 1ep3A 148 :DPEVAAALVKACKAV T0284 150 :VDPALTIIARTNAELI 1ep3A 163 :SKVPLYVKLSPNVTDI T0284 171 :IQRTLAYQEAGADGIC 1ep3A 179 :VPIAKAVEAAGADGLT T0284 189 :GVR 1ep3A 197 :NTL T0284 193 :FAHLEAIAEHLHIPLMLVT 1ep3A 230 :LKLIHQVAQDVDIPIIGMG T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYF 1ep3A 249 :GVANAQDVLEMYMAGASAVAVGTANFA T0284 244 :ATYDCLREE 1ep3A 279 :VCPKIIDKL T0284 263 :SELSKKYTFPEEYQAWARDYMEV 1ep3A 288 :PELMDQYRIESLESLIQEVKEGK Number of specific fragments extracted= 14 number of extra gaps= 1 total=2404 Number of alignments=164 # 1ep3A read from 1ep3A/merged-good-all-a2m # found chain 1ep3A in template set Warning: unaligning (T0284)L187 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0284)V188 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0284 66 :TLSEFVE 1ep3A 80 :GLEVIMT T0284 73 :QATRIGRVA 1ep3A 88 :KLPWLNENF T0284 82 :RLPVIADADH 1ep3A 98 :ELPIIANVAG T0284 94 :GNALNVMRTVVELERA 1ep3A 108 :SEEADYVAVCAKIGDA T0284 110 :GIAALTIEDTLLPAQFG 1ep3A 125 :NVKAIELNISCPNVKHG T0284 130 :TD 1ep3A 142 :GQ T0284 132 :LICVEEGVGKIRAALEA 1ep3A 146 :GTDPEVAAALVKACKAV T0284 150 :VDPALTIIARTNAELI 1ep3A 163 :SKVPLYVKLSPNVTDI T0284 171 :IQRTLAYQEAGADGIC 1ep3A 179 :VPIAKAVEAAGADGLT T0284 189 :GVRD 1ep3A 197 :NTLM T0284 193 :FAHLEAIAEHLHIPLMLVTY 1ep3A 230 :LKLIHQVAQDVDIPIIGMGG T0284 217 :LRDDARLARL 1ep3A 250 :VANAQDVLEM T0284 227 :GVRVVVNGHAAYF 1ep3A 263 :GASAVAVGTANFA T0284 241 :AIKATYDCLREERGAVASDLTASELSKKYT 1ep3A 279 :VCPKIIDKLPELMDQYRIESLESLIQEVKE Number of specific fragments extracted= 14 number of extra gaps= 1 total=2418 Number of alignments=165 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zfjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zfjA expands to /projects/compbio/data/pdb/1zfj.pdb.gz 1zfjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0284 read from 1zfjA/merged-good-all-a2m # 1zfjA read from 1zfjA/merged-good-all-a2m # adding 1zfjA to template set # found chain 1zfjA in template set T0284 22 :CYHTA 1zfjA 47 :PIITA T0284 27 :SVFDPMSARIAADLGFECGILG 1zfjA 55 :TVTGSKMAIAIARAGGLGVIHK T0284 64 :LITLSEFVEQATRIGRVARL 1zfjA 77 :NMSITEQAEEVRKVKRSENG T0284 94 :G 1zfjA 170 :G T0284 95 :NALNVMRTV 1zfjA 172 :DLETAERIL T0284 107 :ERAGIAALTIEDTL 1zfjA 181 :HEHRIEKLPLVDNS T0284 127 :RKSTDLIC 1zfjA 195 :GRLSGLIT T0284 139 :VGKIRAALEAR 1zfjA 203 :IKDIEKVIEFP T0284 150 :VD 1zfjA 220 :FG T0284 153 :ALTIIARTNAE 1zfjA 222 :RLLVAAAVGVT T0284 168 :DAVIQRTLAYQEAGADGICLVGVR 1zfjA 233 :SDTFERAEALFEAGADAIVIDTAH T0284 192 :D 1zfjA 259 :S T0284 193 :FAHLEAIAEHLH 1zfjA 263 :LRKIAEIRAHFP T0284 205 :IPL 1zfjA 276 :RTL T0284 210 :VTYGNPQLRDDARLARLGVRVVVNGHAA 1zfjA 279 :IAGNIATAEGARALYDAGVDVVKVGIGP T0284 238 :YFA 1zfjA 313 :RVV T0284 241 :AIKATYDCLREERG 1zfjA 322 :QVTAIYDAAAVARE Number of specific fragments extracted= 17 number of extra gaps= 0 total=2435 Number of alignments=166 # 1zfjA read from 1zfjA/merged-good-all-a2m # found chain 1zfjA in template set T0284 22 :CYHTA 1zfjA 47 :PIITA T0284 27 :SVFDPMSARIAADLGFECGIL 1zfjA 55 :TVTGSKMAIAIARAGGLGVIH T0284 63 :ALITLSEFVEQATRIGRVAR 1zfjA 76 :KNMSITEQAEEVRKVKRSEN T0284 83 :LPVIADADH 1zfjA 223 :LLVAAAVGV T0284 92 :G 1zfjA 233 :S T0284 98 :NVMRTVVELERAGIAALTIEDTL 1zfjA 234 :DTFERAEALFEAGADAIVIDTAH T0284 126 :GR 1zfjA 257 :GH T0284 135 :VEEGVGKIRAALEAR 1zfjA 259 :SAGVLRKIAEIRAHF T0284 152 :PALTIIARTNAEL 1zfjA 274 :PNRTLIAGNIATA T0284 172 :QRTLAYQEAGADGICLVGVR 1zfjA 287 :EGARALYDAGVDVVKVGIGP T0284 193 :FAHLEAIAEH 1zfjA 327 :YDAAAVAREY T0284 206 :PLMLVTYGNPQLRDDARLARLGVRVVVNG 1zfjA 338 :KTIIADGGIKYSGDIVKALAAGGNAVMLG Number of specific fragments extracted= 12 number of extra gaps= 0 total=2447 Number of alignments=167 # 1zfjA read from 1zfjA/merged-good-all-a2m # found chain 1zfjA in template set T0284 22 :CYHTA 1zfjA 47 :PIITA T0284 27 :SVFDPMSARIAADLGFECGILG 1zfjA 55 :TVTGSKMAIAIARAGGLGVIHK T0284 64 :LITLSEFVEQATRIGRVARL 1zfjA 77 :NMSITEQAEEVRKVKRSENG T0284 84 :PVIADADHG 1zfjA 224 :LVAAAVGVT T0284 97 :LNVMRTVVELERAGIAALTIEDTLLPA 1zfjA 233 :SDTFERAEALFEAGADAIVIDTAHGHS T0284 136 :EEGVGKIRAALEARVDPALTIIARTN 1zfjA 260 :AGVLRKIAEIRAHFPNRTLIAGNIAT T0284 171 :IQRTLAYQEAGADGICLVGVRD 1zfjA 286 :AEGARALYDAGVDVVKVGIGPG T0284 193 :FAHLEAIAEHLHIPLMLVTYGNP 1zfjA 326 :IYDAAAVAREYGKTIIADGGIKY T0284 220 :DARLA 1zfjA 349 :SGDIV T0284 226 :LGVRVVVNG 1zfjA 358 :AGGNAVMLG Number of specific fragments extracted= 10 number of extra gaps= 0 total=2457 Number of alignments=168 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ujqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ujqA expands to /projects/compbio/data/pdb/1ujq.pdb.gz 1ujqA:Skipped atom 595, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 607, because occupancy 0.500 <= existing 0.500 in 1ujqA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1ujqA # T0284 read from 1ujqA/merged-good-all-a2m # 1ujqA read from 1ujqA/merged-good-all-a2m # adding 1ujqA to template set # found chain 1ujqA in template set Warning: unaligning (T0284)L120 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujqA)A130 Warning: unaligning (T0284)D131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujqA)A130 Warning: unaligning (T0284)W278 because last residue in template chain is (1ujqA)L286 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1ujqA 5 :SPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDT 1ujqA 93 :SAFNVARTVKSIAKAGAAALHIEDQ T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAEL 1ujqA 131 :IVSKEEMVDRIRAAVDARTDPNFVIMARTDALA T0284 165 :IDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1ujqA 165 :EGLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1ujqA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQ T0284 255 :AVASDLTASELSKKYTFPEEYQA 1ujqA 263 :VIDIMQTRNELYESINYYQFEEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=2463 Number of alignments=169 # 1ujqA read from 1ujqA/merged-good-all-a2m # found chain 1ujqA in template set Warning: unaligning (T0284)H7 because first residue in template chain is (1ujqA)H4 Warning: unaligning (T0284)L120 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujqA)A130 Warning: unaligning (T0284)D131 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujqA)A130 Warning: unaligning (T0284)W278 because last residue in template chain is (1ujqA)L286 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1ujqA 5 :SPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDT 1ujqA 93 :SAFNVARTVKSIAKAGAAALHIEDQ T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1ujqA 131 :IVSKEEMVDRIRAAVDARTDPNFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1ujqA 166 :GLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1ujqA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQ T0284 259 :DLTASELSKKYTFPEEYQA 1ujqA 267 :MQTRNELYESINYYQFEEK Number of specific fragments extracted= 6 number of extra gaps= 0 total=2469 Number of alignments=170 # 1ujqA read from 1ujqA/merged-good-all-a2m # found chain 1ujqA in template set Warning: unaligning (T0284)L120 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujqA)A130 T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1ujqA 6 :PGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDT 1ujqA 93 :SAFNVARTVKSIAKAGAAALHIEDQ T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1ujqA 131 :IVSKEEMVDRIRAAVDARTDPNFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1ujqA 166 :GLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYM 1ujqA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYESINYYQFEEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2474 Number of alignments=171 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mumA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mumA expands to /projects/compbio/data/pdb/1mum.pdb.gz 1mumA:# T0284 read from 1mumA/merged-good-all-a2m # 1mumA read from 1mumA/merged-good-all-a2m # adding 1mumA to template set # found chain 1mumA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1mumA 6 :PGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGR 1mumA 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGH T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAEL 1mumA 127 :PNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA T0284 165 :IDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1mumA 165 :EGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1mumA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQ T0284 255 :AVASDLTASELSKKYTFPEEYQAWARDY 1mumA 263 :VIDTMQTRNELYESINYYQYEEKLDNLF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2480 Number of alignments=172 # 1mumA read from 1mumA/merged-good-all-a2m # found chain 1mumA in template set Warning: unaligning (T0284)M283 because last residue in template chain is (1mumA)A291 T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1mumA 5 :SPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGR 1mumA 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGH T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELI 1mumA 127 :PNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1mumA 166 :GLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1mumA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQ T0284 259 :DLTASELSKKYTFPEEYQAWARDY 1mumA 267 :MQTRNELYESINYYQYEEKLDNLF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2486 Number of alignments=173 # 1mumA read from 1mumA/merged-good-all-a2m # found chain 1mumA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG 1mumA 6 :PGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFG T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTD 1mumA 93 :SAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNK T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1mumA 131 :IVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAV T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTY 1mumA 166 :GLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANIT T0284 213 :GNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEV 1mumA 215 :GATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEKLD Number of specific fragments extracted= 5 number of extra gaps= 0 total=2491 Number of alignments=174 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pymA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pymA expands to /projects/compbio/data/pdb/1pym.pdb.gz 1pymA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 419, because occupancy 0.500 <= existing 0.500 in 1pymA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 550, because occupancy 0.500 <= existing 0.500 in 1pymA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 1pymA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0284 read from 1pymA/merged-good-all-a2m # 1pymA read from 1pymA/merged-good-all-a2m # adding 1pymA to template set # found chain 1pymA in template set T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1pymA 6 :KKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQ 1pymA 54 :LGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKT T0284 125 :FGR 1pymA 123 :SLH T0284 128 :KSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELID 1pymA 128 :RAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG T0284 167 :VDAVIQRTLAYQEAGADGICLV 1pymA 169 :LDEALKRAEAYRNAGADAILMH T0284 189 :GVRDFAHLEAIAEHLH 1pymA 192 :KKADPSDIEAFMKAWN T0284 205 :IPLMLVTYGN 1pymA 210 :GPVVIVPTKY T0284 216 :QLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1pymA 220 :YKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYD T0284 255 :AVASDLTASELSKKYTFPEEYQAWARDY 1pymA 265 :VEDKIVSVKEIFRLQRDDELVQAEDKYL Number of specific fragments extracted= 9 number of extra gaps= 0 total=2500 Number of alignments=175 # 1pymA read from 1pymA/merged-good-all-a2m # found chain 1pymA in template set T0284 8 :ELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1pymA 6 :KKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGR 1pymA 54 :LGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSL T0284 128 :KSTD 1pymA 126 :DGRA T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1pymA 132 :LADIEEFALKIKACKDSQTDPDFCIVARVEAFIA T0284 166 :DVDAVIQRTLAYQEAGADGICLVG 1pymA 168 :GLDEALKRAEAYRNAGADAILMHS T0284 190 :VRDFAHLEAIAEHLH 1pymA 193 :KADPSDIEAFMKAWN T0284 205 :IPLMLVTYGNPQL 1pymA 210 :GPVVIVPTKYYKT T0284 219 :DDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1pymA 223 :PTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSL T0284 259 :DLTASELSKKYTFPEEYQAWARDY 1pymA 269 :IVSVKEIFRLQRDDELVQAEDKYL Number of specific fragments extracted= 9 number of extra gaps= 0 total=2509 Number of alignments=176 # 1pymA read from 1pymA/merged-good-all-a2m # found chain 1pymA in template set T0284 9 :LRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1pymA 7 :KTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ T0284 57 :LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTD 1pymA 54 :LGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGR T0284 132 :LICVEEGVGKIRAALEARVDPALTIIARTNAELI 1pymA 132 :LADIEEFALKIKACKDSQTDPDFCIVARVEAFIA T0284 166 :DVDAVIQRTLAYQEAGADGICLVGVRD 1pymA 168 :GLDEALKRAEAYRNAGADAILMHSKKA T0284 193 :FAHLEAIAEHL 1pymA 196 :PSDIEAFMKAW T0284 204 :HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEV 1pymA 208 :NQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVSVKEIFRLQRDDELVQAED Number of specific fragments extracted= 6 number of extra gaps= 0 total=2515 Number of alignments=177 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f61A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f61A expands to /projects/compbio/data/pdb/1f61.pdb.gz 1f61A:# T0284 read from 1f61A/merged-good-all-a2m # 1f61A read from 1f61A/merged-good-all-a2m # adding 1f61A to template set # found chain 1f61A in template set T0284 7 :HELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1f61A 50 :RRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGD T0284 56 :VLA 1f61A 101 :LSG T0284 59 :APDFALITLSEFVEQATRIGRVA 1f61A 106 :YPDQSLYPANSVPQVVRRINNAL T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLL 1f61A 149 :PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLA T0284 122 :PAQFGR 1f61A 188 :EKKCGH T0284 128 :KSTDLICVEEGVGKIRAALEAR 1f61A 195 :GGKVLIPTQQHIRTLTSARLAA T0284 150 :VDPALTIIARTNAELI 1f61A 219 :ADVPTVVIARTDAEAA T0284 166 :DVDAVIQRTLAYQEA 1f61A 264 :GIEPCIARAKAYAPF T0284 182 :ADGICLV 1f61A 279 :ADLIWME T0284 189 :GVRDFAHLEAIAEHL 1f61A 287 :GTPDLEAARQFSEAV T0284 204 :HIPLMLVTYGNPQLRDD 1f61A 304 :EYPDQMLAYNCSPSFNW T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERG 1f61A 334 :KELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQ T0284 255 :AVASDLTASELSKKYTFPEEYQAWARDY 1f61A 375 :ELQEREFAAEERGYTATKHQREVGAGYF Number of specific fragments extracted= 13 number of extra gaps= 0 total=2528 Number of alignments=178 # 1f61A read from 1f61A/merged-good-all-a2m # found chain 1f61A in template set T0284 2 :HRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVAS 1f61A 45 :EHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVA T0284 54 :LQVLA 1f61A 99 :ANLSG T0284 59 :APDFALITLSEFVEQATRIGRVAR 1f61A 106 :YPDQSLYPANSVPQVVRRINNALQ T0284 83 :LPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1f61A 148 :APIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS T0284 123 :AQFGR 1f61A 189 :KKCGH T0284 128 :KSTDLICVEEGVGKIRAALEA 1f61A 195 :GGKVLIPTQQHIRTLTSARLA T0284 149 :RVDPALTIIARTNAELIDV 1f61A 218 :VADVPTVVIARTDAEAATL T0284 168 :DAVIQRTLAYQEA 1f61A 266 :EPCIARAKAYAPF T0284 182 :ADGICLVG 1f61A 279 :ADLIWMET T0284 190 :VRDFAHLEAIAEHL 1f61A 288 :TPDLEAARQFSEAV T0284 206 :PLMLVTYGNPQLRDDA 1f61A 306 :PDQMLAYNCSPSFNWK T0284 222 :RLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVAS 1f61A 335 :ELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMS T0284 271 :FPEEYQAWARDYME 1f61A 372 :AYVELQEREFAAEE Number of specific fragments extracted= 13 number of extra gaps= 0 total=2541 Number of alignments=179 # 1f61A read from 1f61A/merged-good-all-a2m # found chain 1f61A in template set T0284 1 :MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQ 1f61A 44 :EEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGD T0284 57 :LAAPDFALITLSEFVEQATRIGRVARL 1f61A 104 :HTYPDQSLYPANSVPQVVRRINNALQR T0284 84 :PVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP 1f61A 149 :PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLAS T0284 123 :AQFGRKSTD 1f61A 189 :KKCGHLGGK T0284 132 :LICVEEGVGKIRAAL 1f61A 199 :LIPTQQHIRTLTSAR T0284 147 :EARVDPALTIIARTNAELI 1f61A 216 :ADVADVPTVVIARTDAEAA T0284 167 :VDAVIQRTLAYQEA 1f61A 265 :IEPCIARAKAYAPF T0284 182 :ADGICLVGVRD 1f61A 279 :ADLIWMETGTP T0284 193 :FAHLEAIAEHL 1f61A 291 :LEAARQFSEAV T0284 204 :HIPLMLVTY 1f61A 307 :DQMLAYNCS T0284 216 :QLRDD 1f61A 316 :PSFNW T0284 221 :ARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVA 1f61A 334 :KELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQM T0284 260 :LTASELSKKYT 1f61A 371 :SAYVELQEREF T0284 281 :DYM 1f61A 382 :AAE Number of specific fragments extracted= 14 number of extra gaps= 0 total=2555 Number of alignments=180 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w5qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w5qA expands to /projects/compbio/data/pdb/1w5q.pdb.gz 1w5qA:Skipped atom 260, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 262, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 264, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 266, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 268, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 270, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 272, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 333, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 479, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 481, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 483, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 485, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 487, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 489, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 491, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 493, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 495, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 497, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 499, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 578, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 580, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 586, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 588, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 608, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 610, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 612, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 881, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 883, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 885, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 887, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 889, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 891, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 893, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 895, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 897, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 899, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 901, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 915, because occupancy 0.750 <= existing 0.750 in 1w5qA Skipped atom 917, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 919, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 921, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 923, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 925, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 927, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 929, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 931, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 933, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 935, because occupancy 0.250 <= existing 0.750 in 1w5qA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1131, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1139, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1272, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1274, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1276, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1278, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1280, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1282, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1284, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1286, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1310, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1312, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1314, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1316, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1318, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1320, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1322, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1324, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1326, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1328, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1330, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1375, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1377, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1379, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1381, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1383, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 1531, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1533, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1535, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1537, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1539, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1541, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1543, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1545, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1547, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1571, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1573, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1575, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1577, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1579, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1581, because occupancy 0.200 <= existing 0.800 in 1w5qA Skipped atom 1992, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1994, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1996, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 1998, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2000, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2002, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2004, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2006, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2015, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2017, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2019, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2021, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2023, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2025, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2027, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2029, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2058, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2060, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2062, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2064, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2066, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2068, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2070, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2072, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2124, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2126, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2128, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2130, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2132, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2134, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2136, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2138, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2140, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2142, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2144, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2181, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2183, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2185, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2187, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2189, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2191, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2193, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2195, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2197, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2210, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2212, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2214, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2216, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2218, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2220, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2222, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2224, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2226, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2228, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2230, because occupancy 0.500 <= existing 0.500 in 1w5qA Skipped atom 2333, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2335, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2337, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2339, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2341, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2343, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2345, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2347, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2359, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2361, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2363, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2365, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2367, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2369, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2371, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2373, because occupancy 0.300 <= existing 0.700 in 1w5qA Skipped atom 2470, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2472, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2474, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2476, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2478, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2480, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2482, because occupancy 0.400 <= existing 0.600 in 1w5qA Skipped atom 2484, because occupancy 0.400 <= existing 0.600 in 1w5qA # T0284 read from 1w5qA/merged-good-all-a2m # 1w5qA read from 1w5qA/merged-good-all-a2m # adding 1w5qA to template set # found chain 1w5qA in template set Warning: unaligning (T0284)A158 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1w5qA)Y202 Warning: unaligning (T0284)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w5qA)S208 Warning: unaligning (T0284)A162 because of BadResidue code BAD_PEPTIDE at template residue (1w5qA)S208 Warning: unaligning (T0284)G189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w5qA)G262 T0284 10 :RAMFR 1w5qA 65 :IDQLL T0284 32 :MSARIAADLGFECGILG 1w5qA 70 :IEAEEWVALGIPALALF T0284 56 :VLAAPDFALIT 1w5qA 93 :KKSLDAAEAYN T0284 69 :EFVEQATRIGRVA 1w5qA 107 :IAQRATRALRERF T0284 82 :RLPVIADADHG 1w5qA 121 :ELGIITDVCLC T0284 93 :YG 1w5qA 133 :FT T0284 95 :N 1w5qA 137 :G T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1w5qA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 140 :GKIRAALEAR 1w5qA 180 :GRIGAIREAL T0284 150 :VDPALTII 1w5qA 193 :GHTNVRVM T0284 159 :RT 1w5qA 205 :KY T0284 163 :ELI 1w5qA 209 :AYY T0284 166 :DVDAVIQRTLAYQEAGADGICLV 1w5qA 238 :NSDEALHEVAADLAEGADMVMVK T0284 190 :VRDFAHLEAIAEHLHIPLMLVTY 1w5qA 263 :MPYLDIVRRVKDEFRAPTFVYQV T0284 219 :DD 1w5qA 286 :SG T0284 221 :ARLARLGVRVVVNGHAAYFA 1w5qA 311 :TAFKRAGADGILTYFAKQAA T0284 243 :KATY 1w5qA 331 :EQLR Number of specific fragments extracted= 17 number of extra gaps= 3 total=2572 Number of alignments=181 # 1w5qA read from 1w5qA/merged-good-all-a2m # found chain 1w5qA in template set Warning: unaligning (T0284)A158 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1w5qA)Y202 Warning: unaligning (T0284)N161 because of BadResidue code BAD_PEPTIDE in next template residue (1w5qA)S208 Warning: unaligning (T0284)A162 because of BadResidue code BAD_PEPTIDE at template residue (1w5qA)S208 Warning: unaligning (T0284)G189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w5qA)G262 T0284 10 :RAMFRALLDS 1w5qA 65 :IDQLLIEAEE T0284 37 :AADLGFECGILG 1w5qA 75 :WVALGIPALALF T0284 57 :LA 1w5qA 96 :LD T0284 59 :APDF 1w5qA 103 :NPEG T0284 69 :EFVEQATRIGR 1w5qA 107 :IAQRATRALRE T0284 80 :VARLPVIADADHG 1w5qA 119 :FPELGIITDVCLC T0284 93 :YG 1w5qA 133 :FT T0284 95 :N 1w5qA 137 :G T0284 96 :ALNVMRTVVELERAGIAALTIEDTL 1w5qA 154 :IDVLVRQALSHAEAGAQVVAPSDMM T0284 136 :EEGVGKIRAALEARVDPALTII 1w5qA 179 :DGRIGAIREALESAGHTNVRVM T0284 159 :RT 1w5qA 205 :KY T0284 163 :ELIDV 1w5qA 209 :AYYGP T0284 168 :DAVIQRTLAYQEAGADGICLV 1w5qA 240 :DEALHEVAADLAEGADMVMVK T0284 190 :VRDFAHLEAIAEHLHIPLMLVTY 1w5qA 263 :MPYLDIVRRVKDEFRAPTFVYQV T0284 218 :RDDA 1w5qA 287 :GEYA T0284 222 :RLARLGVRVVVNGH 1w5qA 312 :AFKRAGADGILTYF T0284 245 :TYDCLREER 1w5qA 326 :AKQAAEQLR Number of specific fragments extracted= 17 number of extra gaps= 3 total=2589 Number of alignments=182 # 1w5qA read from 1w5qA/merged-good-all-a2m # found chain 1w5qA in template set Warning: unaligning (T0284)A158 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1w5qA)Y202 Warning: unaligning (T0284)R159 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1w5qA)Y202 Warning: unaligning (T0284)L164 because of BadResidue code BAD_PEPTIDE in next template residue (1w5qA)S208 Warning: unaligning (T0284)I165 because of BadResidue code BAD_PEPTIDE at template residue (1w5qA)S208 Warning: unaligning (T0284)G189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w5qA)G262 Warning: unaligning (T0284)V190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1w5qA)G262 T0284 10 :RAMFRALLD 1w5qA 65 :IDQLLIEAE T0284 36 :IAADLGFECGILGGS 1w5qA 74 :EWVALGIPALALFPV T0284 56 :VLAAPDFALITLS 1w5qA 93 :KKSLDAAEAYNPE T0284 69 :EFVEQATRIGRVA 1w5qA 107 :IAQRATRALRERF T0284 82 :RLPVIADA 1w5qA 121 :ELGIITDV T0284 90 :DHGYG 1w5qA 144 :DDGYV T0284 95 :NALNVMRTVVELERAGIAALTIEDTLLP 1w5qA 153 :SIDVLVRQALSHAEAGAQVVAPSDMMDG T0284 138 :GVGKIRAALEARVDPALTII 1w5qA 181 :RIGAIREALESAGHTNVRVM T0284 160 :TNAE 1w5qA 203 :SAKY T0284 167 :VDAVIQRTLAYQEAGADGICLV 1w5qA 239 :SDEALHEVAADLAEGADMVMVK T0284 191 :RD 1w5qA 263 :MP T0284 193 :FAHLEAIAEHLHIPLMLVTY 1w5qA 266 :LDIVRRVKDEFRAPTFVYQV T0284 249 :LREERGAVASDLTASE 1w5qA 293 :MGAIQNGWLAESVILE T0284 274 :EYQA 1w5qA 309 :SLTA Number of specific fragments extracted= 14 number of extra gaps= 3 total=2603 Number of alignments=183 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0284//projects/compbio/experiments/protein-predict/casp7/T0284/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0284//projects/compbio/experiments/protein-predict/casp7/T0284/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0284/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0284/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)A113.CB) [> 2.8073 = 4.6788 < 6.0824] w=1.0000 to align # Constraint # added constraint: constraint((T0284)V103.CB, (T0284)L114.CB) [> 3.3991 = 5.6652 < 7.3647] w=0.9705 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)I111.CB) [> 2.8819 = 4.8031 < 6.2440] w=0.9605 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)T155.CB) [> 2.8763 = 4.7938 < 6.2319] w=0.9592 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)L114.CB) [> 3.2744 = 5.4573 < 7.0945] w=0.9588 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)T115.CB) [> 3.1512 = 5.2521 < 6.8277] w=0.9481 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)T155.CB) [> 4.2402 = 7.0670 < 9.1871] w=0.9477 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)L114.CB) [> 4.1683 = 6.9471 < 9.0312] w=0.9417 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)T115.CB) [> 4.1034 = 6.8389 < 8.8906] w=0.9414 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)C186.CB) [> 3.5248 = 5.8747 < 7.6371] w=0.9318 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)A112.CB) [> 4.0126 = 6.6876 < 8.6939] w=0.9309 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)I111.CB) [> 3.2042 = 5.3404 < 6.9425] w=0.9305 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)A113.CB) [> 4.3159 = 7.1932 < 9.3511] w=0.9290 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)V85.CB) [> 3.5601 = 5.9335 < 7.7135] w=0.9265 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)I157.CB) [> 2.8905 = 4.8175 < 6.2627] w=0.9242 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)A112.CB) [> 2.8272 = 4.7119 < 6.1255] w=0.9235 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)I86.CB) [> 3.0793 = 5.1322 < 6.6719] w=0.9196 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)I111.CB) [> 4.1360 = 6.8933 < 8.9613] w=0.9187 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)T115.CB) [> 3.5203 = 5.8671 < 7.6273] w=0.9179 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)I156.CB) [> 3.9901 = 6.6502 < 8.6453] w=0.9128 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)A112.CB) [> 3.3639 = 5.6065 < 7.2884] w=0.9059 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)P84.CB) [> 2.8923 = 4.8205 < 6.2666] w=0.9030 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)I185.CB) [> 4.1500 = 6.9167 < 8.9917] w=0.9015 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)L154.CB) [> 3.6767 = 6.1279 < 7.9663] w=0.9006 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)I86.CB) [> 3.5464 = 5.9107 < 7.6840] w=0.8917 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)A182.CB) [> 3.2952 = 5.4919 < 7.1395] w=0.8845 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)L154.CB) [> 3.6588 = 6.0981 < 7.9275] w=0.8772 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)T115.CB) [> 3.9671 = 6.6118 < 8.5953] w=0.8712 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)C186.CB) [> 3.9547 = 6.5912 < 8.5685] w=0.8666 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)A87.CB) [> 3.3000 = 5.4999 < 7.1499] w=0.8630 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)V85.CB) [> 4.1378 = 6.8962 < 8.9651] w=0.8598 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)L106.CB) [> 2.8224 = 4.7041 < 6.1153] w=0.8547 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)D183.CB) [> 3.0034 = 5.0056 < 6.5073] w=0.8502 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)I86.CB) [> 3.7201 = 6.2002 < 8.0603] w=0.8488 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)L207.CB) [> 3.5288 = 5.8814 < 7.6458] w=0.8471 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)G184.CA) [> 4.1947 = 6.9911 < 9.0884] w=0.8376 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)D88.CB) [> 3.7006 = 6.1677 < 8.0180] w=0.8371 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)C186.CB) [> 4.0465 = 6.7441 < 8.7674] w=0.8363 to align # Constraint # added constraint: constraint((T0284)V103.CB, (T0284)A145.CB) [> 3.2617 = 5.4361 < 7.0669] w=0.8361 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)I156.CB) [> 4.2460 = 7.0766 < 9.1996] w=0.8296 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)L83.CB) [> 3.5804 = 5.9674 < 7.7576] w=0.8268 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)P84.CB) [> 3.9778 = 6.6297 < 8.6186] w=0.8268 to align # Constraint # added constraint: constraint((T0284)T75.CB, (T0284)A109.CB) [> 3.1043 = 5.1738 < 6.7260] w=0.8263 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)L114.CB) [> 3.3681 = 5.6134 < 7.2974] w=0.8242 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)P84.CB) [> 4.0566 = 6.7611 < 8.7894] w=0.8216 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)I185.CB) [> 3.4549 = 5.7582 < 7.4857] w=0.8206 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)I157.CB) [> 4.2163 = 7.0272 < 9.1354] w=0.8199 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)I86.CB) [> 4.1416 = 6.9027 < 8.9735] w=0.8159 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)A180.CB) [> 3.0562 = 5.0936 < 6.6217] w=0.8141 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)P206.CB) [> 3.0379 = 5.0632 < 6.5821] w=0.8113 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)G184.CA) [> 4.0862 = 6.8104 < 8.8535] w=0.8082 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)I156.CB) [> 3.5601 = 5.9335 < 7.7136] w=0.8081 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)I142.CB) [> 3.8343 = 6.3905 < 8.3077] w=0.8078 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)V85.CB) [> 3.7770 = 6.2950 < 8.1835] w=0.8041 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)A113.CB) [> 4.3570 = 7.2617 < 9.4402] w=0.8008 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)L207.CB) [> 3.9100 = 6.5167 < 8.4717] w=0.7998 to align # Constraint # added constraint: constraint((T0284)A34.CB, (T0284)I77.CB) [> 3.2402 = 5.4004 < 7.0205] w=0.7971 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)M208.CB) [> 3.8966 = 6.4943 < 8.4426] w=0.7908 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)A145.CB) [> 3.7095 = 6.1825 < 8.0372] w=0.7901 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)I205.CB) [> 3.1745 = 5.2909 < 6.8781] w=0.7875 to align # Constraint # added constraint: constraint((T0284)A74.CB, (T0284)A109.CB) [> 2.8723 = 4.7871 < 6.2232] w=0.7848 to align # Constraint # added constraint: constraint((T0284)T174.CB, (T0284)I185.CB) [> 3.2782 = 5.4636 < 7.1027] w=0.7827 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)I205.CB) [> 3.6040 = 6.0067 < 7.8087] w=0.7818 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)G184.CA) [> 3.2179 = 5.3632 < 6.9722] w=0.7798 to align # Constraint # added constraint: constraint((T0284)R143.CB, (T0284)A180.CB) [> 3.3194 = 5.5324 < 7.1922] w=0.7795 to align # Constraint # added constraint: constraint((T0284)A200.CB, (T0284)G227.CA) [> 3.2733 = 5.4555 < 7.0921] w=0.7794 to align # Constraint # added constraint: constraint((T0284)A74.CB, (T0284)I111.CB) [> 3.6182 = 6.0304 < 7.8395] w=0.7789 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)A145.CB) [> 4.0166 = 6.6944 < 8.7027] w=0.7773 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)P206.CB) [> 4.1631 = 6.9385 < 9.0201] w=0.7762 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)I156.CB) [> 4.0818 = 6.8031 < 8.8440] w=0.7723 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)L83.CB) [> 4.0094 = 6.6823 < 8.6870] w=0.7723 to align # Constraint # added constraint: constraint((T0284)L207.CB, (T0284)R229.CB) [> 3.2561 = 5.4268 < 7.0549] w=0.7704 to align # Constraint # added constraint: constraint((T0284)A74.CB, (T0284)A87.CB) [> 3.5809 = 5.9682 < 7.7587] w=0.7684 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)G45.CA) [> 3.4408 = 5.7347 < 7.4551] w=0.7671 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)L83.CB) [> 3.7329 = 6.2215 < 8.0880] w=0.7624 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)A113.CB) [> 4.1436 = 6.9060 < 8.9778] w=0.7609 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)G110.CA) [> 4.1845 = 6.9742 < 9.0664] w=0.7595 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)I199.CB) [> 3.6766 = 6.1277 < 7.9660] w=0.7560 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)T102.CB) [> 3.2779 = 5.4632 < 7.1021] w=0.7549 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)I156.CB) [> 3.7750 = 6.2916 < 8.1791] w=0.7481 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)G45.CA) [> 3.6547 = 6.0912 < 7.9186] w=0.7440 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)D88.CB) [> 3.7392 = 6.2320 < 8.1017] w=0.7427 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)V232.CB) [> 3.3289 = 5.5481 < 7.2126] w=0.7410 to align # Constraint # added constraint: constraint((T0284)R159.CB, (T0284)C186.CB) [> 3.1840 = 5.3067 < 6.8987] w=0.7378 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)A182.CB) [> 3.6685 = 6.1142 < 7.9484] w=0.7322 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)A158.CB) [> 4.2517 = 7.0862 < 9.2121] w=0.7255 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)D183.CB) [> 3.5273 = 5.8788 < 7.6424] w=0.7223 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)D88.CB) [> 2.8484 = 4.7473 < 6.1715] w=0.7210 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)D183.CB) [> 4.2708 = 7.1179 < 9.2533] w=0.7210 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)M208.CB) [> 4.0148 = 6.6914 < 8.6988] w=0.7204 to align # Constraint # added constraint: constraint((T0284)A74.CB, (T0284)L106.CB) [> 3.7527 = 6.2545 < 8.1308] w=0.7204 to align # Constraint # added constraint: constraint((T0284)G78.CA, (T0284)G110.CA) [> 3.8511 = 6.4185 < 8.3440] w=0.7194 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)I116.CB) [> 3.2355 = 5.3925 < 7.0103] w=0.7187 to align # Constraint # added constraint: constraint((T0284)A96.CB, (T0284)K141.CB) [> 3.4723 = 5.7872 < 7.5233] w=0.7180 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)I46.CB) [> 3.3671 = 5.6119 < 7.2955] w=0.7153 to align # Constraint # added constraint: constraint((T0284)A38.CB, (T0284)L83.CB) [> 3.4068 = 5.6781 < 7.3815] w=0.7146 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)A158.CB) [> 3.6772 = 6.1287 < 7.9672] w=0.7143 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)V230.CB) [> 3.8795 = 6.4659 < 8.4057] w=0.7141 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)V228.CB) [> 3.2844 = 5.4740 < 7.1162] w=0.7138 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)A74.CB) [> 3.6464 = 6.0774 < 7.9006] w=0.7133 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)R159.CB) [> 4.1682 = 6.9469 < 9.0310] w=0.7099 to align # Constraint # added constraint: constraint((T0284)L196.CB, (T0284)L226.CB) [> 3.2436 = 5.4059 < 7.0277] w=0.7097 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)I46.CB) [> 3.9203 = 6.5338 < 8.4939] w=0.7095 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)A182.CB) [> 3.9038 = 6.5063 < 8.4582] w=0.7093 to align # Constraint # added constraint: constraint((T0284)Q178.CB, (T0284)I205.CB) [> 3.2903 = 5.4838 < 7.1289] w=0.7078 to align # Constraint # added constraint: constraint((T0284)I171.CB, (T0284)H202.CB) [> 3.2150 = 5.3584 < 6.9659] w=0.7031 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)F42.CB) [> 3.4212 = 5.7020 < 7.4126] w=0.7024 to align # Constraint # added constraint: constraint((T0284)T174.CB, (T0284)L203.CB) [> 3.4306 = 5.7177 < 7.4330] w=0.7024 to align # Constraint # added constraint: constraint((T0284)L196.CB, (T0284)V228.CB) [> 3.7902 = 6.3170 < 8.2121] w=0.6973 to align # Constraint # added constraint: constraint((T0284)T211.CB, (T0284)V232.CB) [> 3.5831 = 5.9718 < 7.7633] w=0.6971 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)G138.CA) [> 3.5708 = 5.9513 < 7.7367] w=0.6963 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)A180.CB) [> 3.9727 = 6.6212 < 8.6076] w=0.6924 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)V210.CB) [> 3.8888 = 6.4813 < 8.4257] w=0.6904 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)I77.CB) [> 3.7669 = 6.2782 < 8.1616] w=0.6903 to align # Constraint # added constraint: constraint((T0284)R159.CB, (T0284)V188.CB) [> 3.6399 = 6.0665 < 7.8864] w=0.6902 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)Y177.CB) [> 3.6626 = 6.1043 < 7.9356] w=0.6853 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)L209.CB) [> 3.7568 = 6.2614 < 8.1398] w=0.6825 to align # Constraint # added constraint: constraint((T0284)V71.CB, (T0284)A109.CB) [> 3.1681 = 5.2802 < 6.8642] w=0.6810 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)I157.CB) [> 4.2269 = 7.0448 < 9.1582] w=0.6794 to align # Constraint # added constraint: constraint((T0284)V99.CB, (T0284)I116.CB) [> 3.8945 = 6.4908 < 8.4380] w=0.6780 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)M208.CB) [> 3.0247 = 5.0412 < 6.5536] w=0.6772 to align # Constraint # added constraint: constraint((T0284)M208.CB, (T0284)R229.CB) [> 3.8298 = 6.3830 < 8.2979] w=0.6732 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)I157.CB) [> 3.7023 = 6.1706 < 8.0218] w=0.6732 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)V231.CB) [> 3.5021 = 5.8368 < 7.5879] w=0.6727 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)Y177.CB) [> 2.9249 = 4.8748 < 6.3373] w=0.6692 to align # Constraint # added constraint: constraint((T0284)E197.CB, (T0284)L226.CB) [> 3.1645 = 5.2742 < 6.8565] w=0.6681 to align # Constraint # added constraint: constraint((T0284)A200.CB, (T0284)L226.CB) [> 3.4660 = 5.7766 < 7.5096] w=0.6679 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)T155.CB) [> 3.9652 = 6.6086 < 8.5912] w=0.6677 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)A180.CB) [> 3.2135 = 5.3558 < 6.9625] w=0.6675 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)L154.CB) [> 3.9933 = 6.6555 < 8.6521] w=0.6672 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)V232.CB) [> 3.5699 = 5.9498 < 7.7347] w=0.6671 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)L106.CB) [> 3.8964 = 6.4941 < 8.4423] w=0.6635 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)D183.CB) [> 3.8221 = 6.3702 < 8.2812] w=0.6621 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)V230.CB) [> 3.0115 = 5.0192 < 6.5250] w=0.6603 to align # Constraint # added constraint: constraint((T0284)L175.CB, (T0284)L203.CB) [> 4.0836 = 6.8060 < 8.8478] w=0.6602 to align # Constraint # added constraint: constraint((T0284)T174.CB, (T0284)I199.CB) [> 3.4481 = 5.7469 < 7.4710] w=0.6590 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)E43.CB) [> 3.4731 = 5.7885 < 7.5250] w=0.6565 to align # Constraint # added constraint: constraint((T0284)M208.CB, (T0284)V228.CB) [> 3.8156 = 6.3593 < 8.2671] w=0.6536 to align # Constraint # added constraint: constraint((T0284)A96.CB, (T0284)A144.CB) [> 3.0711 = 5.1185 < 6.6541] w=0.6505 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)V231.CB) [> 4.1479 = 6.9131 < 8.9870] w=0.6486 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)A87.CB) [> 4.1277 = 6.8795 < 8.9434] w=0.6467 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)R76.CB) [> 3.2457 = 5.4095 < 7.0324] w=0.6446 to align # Constraint # added constraint: constraint((T0284)A200.CB, (T0284)V228.CB) [> 4.1440 = 6.9067 < 8.9787] w=0.6445 to align # Constraint # added constraint: constraint((T0284)M100.CB, (T0284)A144.CB) [> 3.3832 = 5.6387 < 7.3303] w=0.6433 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V232.CB) [> 3.1090 = 5.1817 < 6.7362] w=0.6425 to align # Constraint # added constraint: constraint((T0284)V103.CB, (T0284)A148.CB) [> 3.2384 = 5.3974 < 7.0166] w=0.6425 to align # Constraint # added constraint: constraint((T0284)Q178.CB, (T0284)L203.CB) [> 3.4614 = 5.7690 < 7.4997] w=0.6417 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)V232.CB) [> 3.8989 = 6.4982 < 8.4477] w=0.6412 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)V188.CB) [> 3.6859 = 6.1432 < 7.9862] w=0.6393 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)V210.CB) [> 3.6921 = 6.1535 < 7.9996] w=0.6389 to align # Constraint # added constraint: constraint((T0284)M208.CB, (T0284)V230.CB) [> 3.2257 = 5.3762 < 6.9890] w=0.6358 to align # Constraint # added constraint: constraint((T0284)E117.CB, (T0284)R159.CB) [> 3.0448 = 5.0747 < 6.5971] w=0.6345 to align # Constraint # added constraint: constraint((T0284)A38.CB, (T0284)A81.CB) [> 3.4600 = 5.7667 < 7.4967] w=0.6336 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)L83.CB) [> 3.8870 = 6.4783 < 8.4218] w=0.6334 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)A176.CB) [> 3.6563 = 6.0938 < 7.9220] w=0.6328 to align # Constraint # added constraint: constraint((T0284)T211.CB, (T0284)V231.CB) [> 3.9474 = 6.5791 < 8.5528] w=0.6320 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)N233.CB) [> 4.1802 = 6.9670 < 9.0571] w=0.6307 to align # Constraint # added constraint: constraint((T0284)P206.CB, (T0284)R229.CB) [> 2.6696 = 4.4493 < 5.7841] w=0.6301 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)G181.CA) [> 3.2716 = 5.4526 < 7.0884] w=0.6283 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)G184.CA) [> 3.9660 = 6.6100 < 8.5930] w=0.6280 to align # Constraint # added constraint: constraint((T0284)E107.CB, (T0284)L154.CB) [> 3.5294 = 5.8824 < 7.6471] w=0.6261 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)L114.CB) [> 4.4110 = 7.3516 < 9.5571] w=0.6225 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)L196.CB) [> 3.7127 = 6.1879 < 8.0442] w=0.6200 to align # Constraint # added constraint: constraint((T0284)M100.CB, (T0284)A145.CB) [> 3.7234 = 6.2057 < 8.0674] w=0.6200 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)C44.CB) [> 3.5512 = 5.9187 < 7.6943] w=0.6199 to align # Constraint # added constraint: constraint((T0284)L207.CB, (T0284)V228.CB) [> 3.1995 = 5.3324 < 6.9321] w=0.6193 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)L187.CB) [> 3.7639 = 6.2732 < 8.1551] w=0.6153 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)Q73.CB) [> 3.6678 = 6.1130 < 7.9469] w=0.6149 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)V103.CB) [> 3.5879 = 5.9799 < 7.7738] w=0.6148 to align # Constraint # added constraint: constraint((T0284)L207.CB, (T0284)V230.CB) [> 4.3742 = 7.2904 < 9.4775] w=0.6134 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)L203.CB) [> 3.9085 = 6.5142 < 8.4685] w=0.6099 to align # Constraint # added constraint: constraint((T0284)P206.CB, (T0284)V230.CB) [> 4.1067 = 6.8444 < 8.8977] w=0.6078 to align # Constraint # added constraint: constraint((T0284)F193.CB, (T0284)L226.CB) [> 3.3351 = 5.5584 < 7.2259] w=0.6071 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)M208.CB) [> 3.9788 = 6.6314 < 8.6208] w=0.6067 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)V231.CB) [> 3.8942 = 6.4904 < 8.4375] w=0.6055 to align # Constraint # added constraint: constraint((T0284)V170.CB, (T0284)I199.CB) [> 3.7212 = 6.2021 < 8.0627] w=0.6028 to align # Constraint # added constraint: constraint((T0284)V167.CB, (T0284)A198.CB) [> 3.4236 = 5.7059 < 7.4177] w=0.6024 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)V232.CB) [> 4.0797 = 6.7995 < 8.8393] w=0.6020 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)A158.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.6007 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)T115.CB) [> 3.9600 = 6.6001 < 8.5801] w=0.5965 to align # Constraint # added constraint: constraint((T0284)V99.CB, (T0284)K141.CB) [> 3.6572 = 6.0953 < 7.9239] w=0.5900 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)Y177.CB) [> 3.8235 = 6.3725 < 8.2842] w=0.5867 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)L207.CB) [> 4.3653 = 7.2756 < 9.4582] w=0.5864 to align # Constraint # added constraint: constraint((T0284)M100.CB, (T0284)A148.CB) [> 3.0107 = 5.0178 < 6.5232] w=0.5842 to align # Constraint # added constraint: constraint((T0284)D183.CB, (T0284)P206.CB) [> 4.1381 = 6.8968 < 8.9658] w=0.5839 to align # Constraint # added constraint: constraint((T0284)V104.CB, (T0284)A148.CB) [> 3.5396 = 5.8993 < 7.6691] w=0.5839 to align # Constraint # added constraint: constraint((T0284)V99.CB, (T0284)A145.CB) [> 3.4996 = 5.8326 < 7.5824] w=0.5805 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)I156.CB) [> 3.6120 = 6.0200 < 7.8260] w=0.5796 to align # Constraint # added constraint: constraint((T0284)R159.CB, (T0284)L187.CB) [> 4.0492 = 6.7487 < 8.7732] w=0.5795 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)A87.CB) [> 4.2135 = 7.0225 < 9.1293] w=0.5793 to align # Constraint # added constraint: constraint((T0284)I171.CB, (T0284)I199.CB) [> 3.7778 = 6.2963 < 8.1852] w=0.5785 to align # Constraint # added constraint: constraint((T0284)A34.CB, (T0284)V80.CB) [> 3.6532 = 6.0887 < 7.9153] w=0.5747 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)N233.CB) [> 3.9591 = 6.5984 < 8.5780] w=0.5717 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)D88.CB) [> 3.0678 = 5.1129 < 6.6468] w=0.5705 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)L209.CB) [> 3.7811 = 6.3018 < 8.1923] w=0.5704 to align # Constraint # added constraint: constraint((T0284)A145.CB, (T0284)I156.CB) [> 3.3040 = 5.5068 < 7.1588] w=0.5683 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)G234.CA) [> 3.8814 = 6.4690 < 8.4097] w=0.5672 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)A37.CB) [> 3.3073 = 5.5122 < 7.1658] w=0.5634 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)L47.CB) [> 3.6732 = 6.1219 < 7.9585] w=0.5575 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)C44.CB) [> 4.1336 = 6.8893 < 8.9561] w=0.5566 to align # Constraint # added constraint: constraint((T0284)F193.CB, (T0284)R222.CB) [> 3.6524 = 6.0874 < 7.9136] w=0.5561 to align # Constraint # added constraint: constraint((T0284)V103.CB, (T0284)R149.CB) [> 3.4791 = 5.7986 < 7.5381] w=0.5560 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)C44.CB) [> 3.0555 = 5.0925 < 6.6202] w=0.5555 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)C186.CB) [> 4.1807 = 6.9679 < 9.0583] w=0.5523 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)G234.CA) [> 2.8213 = 4.7022 < 6.1129] w=0.5500 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)A182.CB) [> 4.0597 = 6.7662 < 8.7961] w=0.5449 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)V85.CB) [> 4.3088 = 7.1813 < 9.3357] w=0.5407 to align # Constraint # added constraint: constraint((T0284)L207.CB, (T0284)G227.CA) [> 4.0631 = 6.7719 < 8.8035] w=0.5386 to align # Constraint # added constraint: constraint((T0284)L175.CB, (T0284)H202.CB) [> 3.6763 = 6.1272 < 7.9653] w=0.5370 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)R159.CB) [> 3.5846 = 5.9743 < 7.7665] w=0.5347 to align # Constraint # added constraint: constraint((T0284)T174.CB, (T0284)H202.CB) [> 4.1687 = 6.9478 < 9.0322] w=0.5329 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)I77.CB) [> 3.6457 = 6.0762 < 7.8991] w=0.5327 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)V99.CB) [> 3.5004 = 5.8340 < 7.5841] w=0.5260 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)I157.CB) [> 4.0043 = 6.6739 < 8.6760] w=0.5231 to align # Constraint # added constraint: constraint((T0284)R35.CB, (T0284)V80.CB) [> 3.5227 = 5.8713 < 7.6326] w=0.5217 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)G181.CA) [> 4.1592 = 6.9319 < 9.0115] w=0.5212 to align # Constraint # added constraint: constraint((T0284)A74.CB, (T0284)G110.CA) [> 3.6911 = 6.1518 < 7.9973] w=0.5207 to align # Constraint # added constraint: constraint((T0284)T75.CB, (T0284)G110.CA) [> 4.1685 = 6.9475 < 9.0318] w=0.5206 to align # Constraint # added constraint: constraint((T0284)A182.CB, (T0284)I205.CB) [> 3.9951 = 6.6585 < 8.6560] w=0.5202 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V230.CB) [> 3.7073 = 6.1789 < 8.0325] w=0.5199 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V231.CB) [> 3.6113 = 6.0188 < 7.8244] w=0.5195 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)E117.CB) [> 3.4389 = 5.7314 < 7.4509] w=0.5191 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)F70.CB) [> 3.9485 = 6.5808 < 8.5551] w=0.5111 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)V231.CB) [> 3.4158 = 5.6930 < 7.4008] w=0.5089 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)E117.CB) [> 4.0676 = 6.7794 < 8.8132] w=0.5079 to align # Constraint # added constraint: constraint((T0284)V71.CB, (T0284)L106.CB) [> 3.9247 = 6.5412 < 8.5036] w=0.5060 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)A112.CB) [> 4.5497 = 7.5828 < 9.8576] w=0.5037 to align # Constraint # added constraint: constraint((T0284)I111.CB, (T0284)L154.CB) [> 4.1191 = 6.8652 < 8.9247] w=0.5029 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)T102.CB) [> 3.5634 = 5.9389 < 7.7206] w=0.4989 to align # Constraint # added constraint: constraint((T0284)G140.CA, (T0284)A180.CB) [> 3.7169 = 6.1947 < 8.0532] w=0.4977 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)N233.CB) [> 3.4083 = 5.6806 < 7.3848] w=0.4971 to align # Constraint # added constraint: constraint((T0284)L196.CB, (T0284)L223.CB) [> 3.9186 = 6.5311 < 8.4904] w=0.4924 to align # Constraint # added constraint: constraint((T0284)M208.CB, (T0284)V232.CB) [> 3.6253 = 6.0421 < 7.8547] w=0.4907 to align # Constraint # added constraint: constraint((T0284)V188.CB, (T0284)V210.CB) [> 3.6276 = 6.0460 < 7.8598] w=0.4905 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)L47.CB) [> 4.0198 = 6.6996 < 8.7095] w=0.4879 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)I46.CB) [> 3.0982 = 5.1637 < 6.7127] w=0.4877 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)A158.CB) [> 3.5667 = 5.9445 < 7.7279] w=0.4869 to align # Constraint # added constraint: constraint((T0284)A34.CB, (T0284)A81.CB) [> 3.2713 = 5.4521 < 7.0878] w=0.4859 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)F42.CB) [> 3.8238 = 6.3730 < 8.2849] w=0.4858 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)T174.CB) [> 4.2673 = 7.1121 < 9.2457] w=0.4807 to align # Constraint # added constraint: constraint((T0284)F70.CB, (T0284)A87.CB) [> 3.8147 = 6.3578 < 8.2651] w=0.4772 to align # Constraint # added constraint: constraint((T0284)A96.CB, (T0284)G140.CA) [> 3.9149 = 6.5249 < 8.4824] w=0.4759 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)I46.CB) [> 4.0334 = 6.7224 < 8.7391] w=0.4755 to align # Constraint # added constraint: constraint((T0284)R159.CB, (T0284)I185.CB) [> 4.3472 = 7.2453 < 9.4189] w=0.4688 to align # Constraint # added constraint: constraint((T0284)R143.CB, (T0284)G181.CA) [> 3.9301 = 6.5502 < 8.5153] w=0.4682 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)V230.CB) [> 4.1394 = 6.8991 < 8.9688] w=0.4677 to align # Constraint # added constraint: constraint((T0284)M208.CB, (T0284)V231.CB) [> 4.1421 = 6.9034 < 8.9745] w=0.4672 to align # Constraint # added constraint: constraint((T0284)A34.CB, (T0284)G45.CA) [> 4.1807 = 6.9679 < 9.0583] w=0.4671 to align # Constraint # added constraint: constraint((T0284)I116.CB, (T0284)R159.CB) [> 3.9942 = 6.6570 < 8.6540] w=0.4656 to align # Constraint # added constraint: constraint((T0284)N161.CB, (T0284)V188.CB) [> 3.4030 = 5.6716 < 7.3731] w=0.4633 to align # Constraint # added constraint: constraint((T0284)F193.CB, (T0284)L223.CB) [> 4.2473 = 7.0789 < 9.2025] w=0.4620 to align # Constraint # added constraint: constraint((T0284)E117.CB, (T0284)A158.CB) [> 4.0224 = 6.7041 < 8.7153] w=0.4611 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)G48.CA) [> 3.5698 = 5.9496 < 7.7345] w=0.4592 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)L83.CB) [> 4.2889 = 7.1482 < 9.2927] w=0.4589 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)V230.CB) [> 4.4146 = 7.3576 < 9.5649] w=0.4567 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)I185.CB) [> 3.8904 = 6.4840 < 8.4293] w=0.4517 to align # Constraint # added constraint: constraint((T0284)L196.CB, (T0284)L207.CB) [> 3.9104 = 6.5174 < 8.4726] w=0.4505 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)V228.CB) [> 3.1597 = 5.2661 < 6.8460] w=0.4441 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V231.CB) [> 4.2352 = 7.0586 < 9.1762] w=0.4409 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)F70.CB) [> 3.7880 = 6.3133 < 8.2073] w=0.4386 to align # Constraint # added constraint: constraint((T0284)V99.CB, (T0284)A144.CB) [> 3.6861 = 6.1436 < 7.9866] w=0.4349 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)V232.CB) [> 4.0149 = 6.6915 < 8.6990] w=0.4345 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)I116.CB) [> 3.9400 = 6.5667 < 8.5367] w=0.4310 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)E43.CB) [> 3.7621 = 6.2702 < 8.1512] w=0.4217 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)I77.CB) [> 4.4866 = 7.4777 < 9.7210] w=0.4216 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)V80.CB) [> 2.9360 = 4.8934 < 6.3614] w=0.4215 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)E117.CB) [> 3.7543 = 6.2572 < 8.1344] w=0.4206 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)R229.CB) [> 3.8944 = 6.4907 < 8.4379] w=0.4175 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V230.CB) [> 3.6941 = 6.1568 < 8.0039] w=0.4174 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)N233.CB) [> 3.9009 = 6.5014 < 8.4518] w=0.4170 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)R173.CB) [> 3.1890 = 5.3150 < 6.9095] w=0.4168 to align # Constraint # added constraint: constraint((T0284)I171.CB, (T0284)L203.CB) [> 4.0395 = 6.7326 < 8.7523] w=0.4155 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)G181.CA) [> 3.8473 = 6.4122 < 8.3358] w=0.4149 to align # Constraint # added constraint: constraint((T0284)A145.CB, (T0284)L154.CB) [> 3.6667 = 6.1112 < 7.9446] w=0.4098 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)I116.CB) [> 4.3246 = 7.2077 < 9.3700] w=0.4088 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)G45.CA) [> 4.1616 = 6.9360 < 9.0168] w=0.4056 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)K141.CB) [> 4.0768 = 6.7947 < 8.8331] w=0.4052 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)A237.CB) [> 3.8933 = 6.4889 < 8.4356] w=0.4045 to align # Constraint # added constraint: constraint((T0284)L196.CB, (T0284)G227.CA) [> 3.6195 = 6.0325 < 7.8423] w=0.4037 to align # Constraint # added constraint: constraint((T0284)E117.CB, (T0284)T160.CB) [> 4.0801 = 6.8001 < 8.8402] w=0.3991 to align # Constraint # added constraint: constraint((T0284)Q178.CB, (T0284)H204.CB) [> 4.0548 = 6.7579 < 8.7853] w=0.3984 to align # Constraint # added constraint: constraint((T0284)T174.CB, (T0284)L187.CB) [> 3.9964 = 6.6607 < 8.6590] w=0.3981 to align # Constraint # added constraint: constraint((T0284)G189.CA, (T0284)V210.CB) [> 3.9917 = 6.6529 < 8.6488] w=0.3968 to align # Constraint # added constraint: constraint((T0284)Y93.CB, (T0284)T102.CB) [> 3.6939 = 6.1565 < 8.0035] w=0.3943 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)F42.CB) [> 3.1660 = 5.2766 < 6.8596] w=0.3932 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)R229.CB) [> 3.8372 = 6.3954 < 8.3140] w=0.3919 to align # Constraint # added constraint: constraint((T0284)V104.CB, (T0284)R149.CB) [> 4.1658 = 6.9429 < 9.0258] w=0.3916 to align # Constraint # added constraint: constraint((T0284)V188.CB, (T0284)Y212.CB) [> 3.6409 = 6.0682 < 7.8887] w=0.3914 to align # Constraint # added constraint: constraint((T0284)V170.CB, (T0284)L187.CB) [> 3.8098 = 6.3497 < 8.2547] w=0.3890 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)A109.CB) [> 4.4214 = 7.3690 < 9.5797] w=0.3884 to align # Constraint # added constraint: constraint((T0284)Y212.CB, (T0284)V232.CB) [> 4.0221 = 6.7035 < 8.7146] w=0.3880 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)E105.CB) [> 3.8171 = 6.3618 < 8.2703] w=0.3880 to align # Constraint # added constraint: constraint((T0284)V135.CB, (T0284)A176.CB) [> 3.5376 = 5.8960 < 7.6648] w=0.3870 to align # Constraint # added constraint: constraint((T0284)V135.CB, (T0284)R173.CB) [> 3.2470 = 5.4117 < 7.0353] w=0.3868 to align # Constraint # added constraint: constraint((T0284)G189.CA, (T0284)Y212.CB) [> 3.5601 = 5.9336 < 7.7137] w=0.3863 to align # Constraint # added constraint: constraint((T0284)I86.CB, (T0284)T155.CB) [> 4.2450 = 7.0750 < 9.1975] w=0.3860 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)R149.CB) [> 3.7087 = 6.1812 < 8.0356] w=0.3854 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)V230.CB) [> 3.9102 = 6.5170 < 8.4721] w=0.3852 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)T211.CB) [> 3.8197 = 6.3661 < 8.2760] w=0.3850 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)G48.CA) [> 3.8721 = 6.4536 < 8.3896] w=0.3813 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)G45.CA) [> 3.6192 = 6.0320 < 7.8416] w=0.3762 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)T160.CB) [> 3.5543 = 5.9238 < 7.7009] w=0.3755 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)V170.CB) [> 3.4899 = 5.8165 < 7.5615] w=0.3750 to align # Constraint # added constraint: constraint((T0284)G189.CA, (T0284)T211.CB) [> 3.5848 = 5.9747 < 7.7671] w=0.3739 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)A37.CB) [> 3.8077 = 6.3462 < 8.2500] w=0.3697 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)R101.CB) [> 3.9679 = 6.6132 < 8.5971] w=0.3694 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)A237.CB) [> 4.1799 = 6.9665 < 9.0564] w=0.3684 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)A89.CB) [> 4.0798 = 6.7997 < 8.8396] w=0.3681 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)V232.CB) [> 4.1473 = 6.9122 < 8.9859] w=0.3681 to align # Constraint # added constraint: constraint((T0284)V188.CB, (T0284)T211.CB) [> 3.4326 = 5.7210 < 7.4373] w=0.3679 to align # Constraint # added constraint: constraint((T0284)G138.CA, (T0284)Y177.CB) [> 4.4841 = 7.4735 < 9.7156] w=0.3643 to align # Constraint # added constraint: constraint((T0284)E107.CB, (T0284)V150.CB) [> 3.3796 = 5.6327 < 7.3225] w=0.3636 to align # Constraint # added constraint: constraint((T0284)T211.CB, (T0284)N233.CB) [> 3.7816 = 6.3026 < 8.1934] w=0.3606 to align # Constraint # added constraint: constraint((T0284)G92.CA, (T0284)T102.CB) [> 3.5209 = 5.8682 < 7.6286] w=0.3594 to align # Constraint # added constraint: constraint((T0284)I157.CB, (T0284)M208.CB) [> 4.0152 = 6.6921 < 8.6997] w=0.3583 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A237.CB) [> 3.7081 = 6.1802 < 8.0342] w=0.3578 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G45.CA) [> 3.4873 = 5.8122 < 7.5558] w=0.3571 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)I116.CB) [> 3.7843 = 6.3071 < 8.1993] w=0.3547 to align # Constraint # added constraint: constraint((T0284)R35.CB, (T0284)A81.CB) [> 3.7530 = 6.2550 < 8.1315] w=0.3523 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)V230.CB) [> 4.4037 = 7.3394 < 9.5413] w=0.3514 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)I185.CB) [> 3.5949 = 5.9915 < 7.7890] w=0.3504 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)I86.CB) [> 4.1481 = 6.9135 < 8.9875] w=0.3480 to align # Constraint # added constraint: constraint((T0284)E163.CB, (T0284)V188.CB) [> 4.1189 = 6.8648 < 8.9242] w=0.3469 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)V231.CB) [> 3.3947 = 5.6578 < 7.3552] w=0.3450 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)R229.CB) [> 3.4939 = 5.8232 < 7.5702] w=0.3445 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)C44.CB) [> 4.3744 = 7.2907 < 9.4780] w=0.3414 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)L223.CB) [> 3.2885 = 5.4808 < 7.1250] w=0.3406 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)D88.CB) [> 4.3188 = 7.1979 < 9.3573] w=0.3401 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)I133.CB) [> 3.6083 = 6.0139 < 7.8180] w=0.3341 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)A153.CB) [> 4.3755 = 7.2925 < 9.4803] w=0.3338 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)F42.CB) [> 3.8838 = 6.4731 < 8.4150] w=0.3327 to align # Constraint # added constraint: constraint((T0284)A34.CB, (T0284)G78.CA) [> 4.3465 = 7.2442 < 9.4174] w=0.3304 to align # Constraint # added constraint: constraint((T0284)M100.CB, (T0284)E147.CB) [> 4.2488 = 7.0813 < 9.2057] w=0.3290 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)L47.CB) [> 4.2268 = 7.0447 < 9.1581] w=0.3277 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)Q73.CB) [> 3.8141 = 6.3568 < 8.2638] w=0.3274 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)R159.CB) [> 3.6062 = 6.0103 < 7.8134] w=0.3269 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V232.CB) [> 3.9731 = 6.6217 < 8.6083] w=0.3209 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)Y177.CB) [> 3.8721 = 6.4536 < 8.3897] w=0.3177 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)I65.CB) [> 3.4227 = 5.7046 < 7.4159] w=0.3174 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)Y238.CB) [> 4.1401 = 6.9002 < 8.9703] w=0.3173 to align # Constraint # added constraint: constraint((T0284)S33.CB, (T0284)A237.CB) [> 3.7024 = 6.1707 < 8.0220] w=0.3171 to align # Constraint # added constraint: constraint((T0284)G213.CA, (T0284)N233.CB) [> 4.0824 = 6.8040 < 8.8452] w=0.3166 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)T211.CB) [> 3.9722 = 6.6203 < 8.6064] w=0.3163 to align # Constraint # added constraint: constraint((T0284)A162.CB, (T0284)V188.CB) [> 4.0950 = 6.8250 < 8.8725] w=0.3160 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)G189.CA) [> 3.5396 = 5.8993 < 7.6691] w=0.3153 to align # Constraint # added constraint: constraint((T0284)R10.CB, (T0284)T155.CB) [> 3.6733 = 6.1222 < 7.9589] w=0.3118 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)Q73.CB) [> 3.7871 = 6.3119 < 8.2055] w=0.3114 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)G138.CA) [> 4.1087 = 6.8479 < 8.9023] w=0.3109 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)A224.CB) [> 3.1440 = 5.2400 < 6.8120] w=0.3102 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)N161.CB) [> 3.8126 = 6.3543 < 8.2606] w=0.3063 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)I133.CB) [> 3.7657 = 6.2761 < 8.1589] w=0.3055 to align # Constraint # added constraint: constraint((T0284)G189.CA, (T0284)G213.CA) [> 3.9669 = 6.6115 < 8.5950] w=0.3051 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)A113.CB) [> 4.2970 = 7.1617 < 9.3102] w=0.3037 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)L209.CB) [> 4.0888 = 6.8147 < 8.8591] w=0.3033 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)G48.CA) [> 3.9728 = 6.6213 < 8.6077] w=0.2996 to align # Constraint # added constraint: constraint((T0284)M12.CB, (T0284)P84.CB) [> 3.3064 = 5.5106 < 7.1638] w=0.2995 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)T155.CB) [> 3.4176 = 5.6960 < 7.4047] w=0.2978 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)C186.CB) [> 3.9047 = 6.5078 < 8.4601] w=0.2974 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)N161.CB) [> 3.2595 = 5.4325 < 7.0622] w=0.2953 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)E137.CB) [> 4.0270 = 6.7116 < 8.7251] w=0.2938 to align # Constraint # added constraint: constraint((T0284)L16.CB, (T0284)E43.CB) [> 3.5072 = 5.8453 < 7.5989] w=0.2934 to align # Constraint # added constraint: constraint((T0284)F70.CB, (T0284)T102.CB) [> 3.8183 = 6.3638 < 8.2730] w=0.2927 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)E43.CB) [> 3.9694 = 6.6156 < 8.6003] w=0.2907 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)G234.CA) [> 3.3869 = 5.6449 < 7.3383] w=0.2900 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)I65.CB) [> 4.0247 = 6.7078 < 8.7202] w=0.2882 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)D88.CB) [> 4.2666 = 7.1110 < 9.2443] w=0.2875 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)A81.CB) [> 4.4900 = 7.4833 < 9.7283] w=0.2874 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)I111.CB) [> 4.6370 = 7.7283 < 10.0467] w=0.2874 to align # Constraint # added constraint: constraint((T0284)V170.CB, (T0284)H195.CB) [> 3.9734 = 6.6224 < 8.6091] w=0.2866 to align # Constraint # added constraint: constraint((T0284)G78.CA, (T0284)I111.CB) [> 4.4541 = 7.4235 < 9.6506] w=0.2859 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V228.CB) [> 3.7299 = 6.2165 < 8.0814] w=0.2819 to align # Constraint # added constraint: constraint((T0284)I36.CB, (T0284)A237.CB) [> 4.4369 = 7.3948 < 9.6132] w=0.2811 to align # Constraint # added constraint: constraint((T0284)P215.CB, (T0284)A236.CB) [> 3.6085 = 6.0142 < 7.8185] w=0.2805 to align # Constraint # added constraint: constraint((T0284)N233.CB, (T0284)T245.CB) [> 3.3543 = 5.5905 < 7.2677] w=0.2799 to align # Constraint # added constraint: constraint((T0284)L106.CB, (T0284)L154.CB) [> 4.3161 = 7.1936 < 9.3516] w=0.2786 to align # Constraint # added constraint: constraint((T0284)L164.CB, (T0284)G189.CA) [> 3.9165 = 6.5276 < 8.4858] w=0.2762 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)T119.CB) [> 4.0726 = 6.7878 < 8.8241] w=0.2760 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)L209.CB) [> 3.6362 = 6.0603 < 7.8783] w=0.2744 to align # Constraint # added constraint: constraint((T0284)V188.CB, (T0284)L209.CB) [> 4.3439 = 7.2398 < 9.4118] w=0.2732 to align # Constraint # added constraint: constraint((T0284)M100.CB, (T0284)K141.CB) [> 3.8731 = 6.4552 < 8.3918] w=0.2723 to align # Constraint # added constraint: constraint((T0284)L17.CB, (T0284)R229.CB) [> 3.2271 = 5.3785 < 6.9921] w=0.2706 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)N98.CB) [> 3.7842 = 6.3070 < 8.1992] w=0.2702 to align # Constraint # added constraint: constraint((T0284)A162.CB, (T0284)G189.CA) [> 4.1545 = 6.9241 < 9.0013] w=0.2701 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)R229.CB) [> 4.5674 = 7.6124 < 9.8961] w=0.2698 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)Q73.CB) [> 3.9194 = 6.5323 < 8.4920] w=0.2697 to align # Constraint # added constraint: constraint((T0284)S33.CB, (T0284)A241.CB) [> 4.2284 = 7.0473 < 9.1615] w=0.2693 to align # Constraint # added constraint: constraint((T0284)V231.CB, (T0284)T245.CB) [> 3.8908 = 6.4846 < 8.4300] w=0.2692 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)T119.CB) [> 3.5245 = 5.8742 < 7.6365] w=0.2684 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)C44.CB) [> 3.9951 = 6.6584 < 8.6560] w=0.2646 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)E43.CB) [> 3.3159 = 5.5266 < 7.1845] w=0.2646 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)L47.CB) [> 3.4919 = 5.8198 < 7.5657] w=0.2644 to align # Constraint # added constraint: constraint((T0284)E163.CB, (T0284)G189.CA) [> 3.5697 = 5.9496 < 7.7344] w=0.2642 to align # Constraint # added constraint: constraint((T0284)V71.CB, (T0284)R108.CB) [> 4.3356 = 7.2259 < 9.3937] w=0.2594 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)D90.CB) [> 3.8405 = 6.4008 < 8.3210] w=0.2592 to align # Constraint # added constraint: constraint((T0284)A162.CB, (T0284)R173.CB) [> 3.3573 = 5.5954 < 7.2741] w=0.2589 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)I77.CB) [> 3.7154 = 6.1923 < 8.0500] w=0.2585 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)G45.CA) [> 3.5045 = 5.8408 < 7.5931] w=0.2585 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)G234.CA) [> 3.7486 = 6.2477 < 8.1220] w=0.2585 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)G234.CA) [> 3.8717 = 6.4529 < 8.3887] w=0.2579 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)I185.CB) [> 3.8586 = 6.4311 < 8.3604] w=0.2570 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)E252.CB) [> 3.3643 = 5.6072 < 7.2893] w=0.2569 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)K141.CB) [> 4.1369 = 6.8948 < 8.9632] w=0.2561 to align # Constraint # added constraint: constraint((T0284)G213.CA, (T0284)H235.CB) [> 3.9356 = 6.5594 < 8.5272] w=0.2547 to align # Constraint # added constraint: constraint((T0284)V99.CB, (T0284)A148.CB) [> 4.3092 = 7.1821 < 9.3367] w=0.2527 to align # Constraint # added constraint: constraint((T0284)Y212.CB, (T0284)V231.CB) [> 3.3856 = 5.6426 < 7.3354] w=0.2522 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)T160.CB) [> 3.7319 = 6.2199 < 8.0858] w=0.2516 to align # Constraint # added constraint: constraint((T0284)L154.CB, (T0284)D183.CB) [> 3.2131 = 5.3552 < 6.9617] w=0.2509 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)D118.CB) [> 3.4046 = 5.6743 < 7.3766] w=0.2507 to align # Constraint # added constraint: constraint((T0284)G92.CA, (T0284)E117.CB) [> 3.3689 = 5.6149 < 7.2993] w=0.2504 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)Y238.CB) [> 3.6450 = 6.0750 < 7.8975] w=0.2469 to align # Constraint # added constraint: constraint((T0284)V103.CB, (T0284)A144.CB) [> 3.9080 = 6.5133 < 8.4673] w=0.2469 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)V51.CB) [> 3.5814 = 5.9689 < 7.7596] w=0.2468 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)L226.CB) [> 4.2258 = 7.0430 < 9.1559] w=0.2468 to align # Constraint # added constraint: constraint((T0284)E72.CB, (T0284)A109.CB) [> 4.4802 = 7.4669 < 9.7070] w=0.2467 to align # Constraint # added constraint: constraint((T0284)G41.CA, (T0284)Y246.CB) [> 3.7134 = 6.1890 < 8.0457] w=0.2466 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)Y212.CB) [> 3.5800 = 5.9667 < 7.7567] w=0.2465 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)I77.CB) [> 4.2133 = 7.0222 < 9.1288] w=0.2463 to align # Constraint # added constraint: constraint((T0284)T102.CB, (T0284)L114.CB) [> 4.4501 = 7.4169 < 9.6419] w=0.2463 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)V231.CB) [> 3.7524 = 6.2539 < 8.1301] w=0.2455 to align # Constraint # added constraint: constraint((T0284)E117.CB, (T0284)I157.CB) [> 3.3396 = 5.5659 < 7.2357] w=0.2454 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)I46.CB) [> 4.0026 = 6.6709 < 8.6722] w=0.2445 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)V228.CB) [> 4.4357 = 7.3928 < 9.6107] w=0.2436 to align # Constraint # added constraint: constraint((T0284)V135.CB, (T0284)Q172.CB) [> 4.1141 = 6.8568 < 8.9139] w=0.2412 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)H235.CB) [> 3.6070 = 6.0117 < 7.8152] w=0.2404 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)N233.CB) [> 3.2410 = 5.4017 < 7.0222] w=0.2395 to align # Constraint # added constraint: constraint((T0284)P215.CB, (T0284)H235.CB) [> 3.6043 = 6.0071 < 7.8092] w=0.2392 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)N233.CB) [> 4.3617 = 7.2695 < 9.4503] w=0.2376 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)A237.CB) [> 3.7159 = 6.1932 < 8.0512] w=0.2355 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)V135.CB) [> 4.3594 = 7.2656 < 9.4453] w=0.2350 to align # Constraint # added constraint: constraint((T0284)G94.CA, (T0284)L121.CB) [> 3.8453 = 6.4089 < 8.3315] w=0.2350 to align # Constraint # added constraint: constraint((T0284)G213.CA, (T0284)V232.CB) [> 3.5081 = 5.8469 < 7.6009] w=0.2349 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)A153.CB) [> 3.1572 = 5.2621 < 6.8407] w=0.2340 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)L187.CB) [> 3.7629 = 6.2716 < 8.1531] w=0.2339 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)R76.CB) [> 4.1863 = 6.9772 < 9.0703] w=0.2298 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)T155.CB) [> 3.5189 = 5.8649 < 7.6244] w=0.2297 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)L120.CB) [> 3.9221 = 6.5369 < 8.4980] w=0.2296 to align # Constraint # added constraint: constraint((T0284)R10.CB, (T0284)A113.CB) [> 4.1969 = 6.9948 < 9.0933] w=0.2294 to align # Constraint # added constraint: constraint((T0284)T211.CB, (T0284)V230.CB) [> 3.5624 = 5.9373 < 7.7185] w=0.2291 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)R229.CB) [> 3.8281 = 6.3802 < 8.2942] w=0.2290 to align # Constraint # added constraint: constraint((T0284)A162.CB, (T0284)L187.CB) [> 3.7243 = 6.2072 < 8.0694] w=0.2288 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)Q73.CB) [> 4.0240 = 6.7066 < 8.7186] w=0.2287 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)F42.CB) [> 3.2187 = 5.3645 < 6.9739] w=0.2282 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)D118.CB) [> 4.0497 = 6.7494 < 8.7743] w=0.2230 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)Y23.CB) [> 3.8974 = 6.4956 < 8.4443] w=0.2228 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)A89.CB) [> 3.7719 = 6.2864 < 8.1724] w=0.2223 to align # Constraint # added constraint: constraint((T0284)Y212.CB, (T0284)N233.CB) [> 3.9626 = 6.6043 < 8.5856] w=0.2212 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)G234.CA) [> 4.0838 = 6.8063 < 8.8482] w=0.2209 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)Y93.CB) [> 3.2061 = 5.3435 < 6.9465] w=0.2179 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)R79.CB) [> 3.9946 = 6.6577 < 8.6550] w=0.2178 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)C248.CB) [> 3.5701 = 5.9502 < 7.7352] w=0.2163 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)N233.CB) [> 4.1660 = 6.9433 < 9.0262] w=0.2130 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)V51.CB) [> 2.9889 = 4.9815 < 6.4760] w=0.2119 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)N214.CB) [> 3.7755 = 6.2926 < 8.1804] w=0.2117 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)R173.CB) [> 4.2072 = 7.0120 < 9.1156] w=0.2116 to align # Constraint # added constraint: constraint((T0284)Y93.CB, (T0284)I116.CB) [> 4.1665 = 6.9442 < 9.0275] w=0.2111 to align # Constraint # added constraint: constraint((T0284)L17.CB, (T0284)P206.CB) [> 3.2029 = 5.3382 < 6.9396] w=0.2063 to align # Constraint # added constraint: constraint((T0284)L132.CB, (T0284)N161.CB) [> 3.7882 = 6.3137 < 8.2078] w=0.2062 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)G213.CA) [> 3.8893 = 6.4822 < 8.4269] w=0.2055 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)Q73.CB) [> 3.9497 = 6.5827 < 8.5576] w=0.2055 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)T115.CB) [> 3.8825 = 6.4709 < 8.4121] w=0.2054 to align # Constraint # added constraint: constraint((T0284)Y212.CB, (T0284)L223.CB) [> 3.3393 = 5.5655 < 7.2352] w=0.2053 to align # Constraint # added constraint: constraint((T0284)M12.CB, (T0284)E43.CB) [> 3.7386 = 6.2310 < 8.1003] w=0.2051 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)Q55.CB) [> 3.3181 = 5.5301 < 7.1892] w=0.2004 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)L132.CB) [> 3.7737 = 6.2895 < 8.1764] w=0.2003 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)V210.CB) [> 3.7373 = 6.2288 < 8.0975] w=0.1997 to align # Constraint # added constraint: constraint((T0284)G41.CA, (T0284)K243.CB) [> 4.2979 = 7.1632 < 9.3122] w=0.1992 to align # Constraint # added constraint: constraint((T0284)R21.CB, (T0284)A224.CB) [> 3.6484 = 6.0807 < 7.9050] w=0.1985 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)C44.CB) [> 4.5010 = 7.5017 < 9.7522] w=0.1982 to align # Constraint # added constraint: constraint((T0284)G213.CA, (T0284)A236.CB) [> 4.0217 = 6.7028 < 8.7137] w=0.1970 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)T245.CB) [> 3.7649 = 6.2748 < 8.1573] w=0.1960 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)P84.CB) [> 2.9058 = 4.8431 < 6.2960] w=0.1945 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)L132.CB) [> 3.2935 = 5.4891 < 7.1359] w=0.1944 to align # Constraint # added constraint: constraint((T0284)L16.CB, (T0284)C44.CB) [> 3.7969 = 6.3281 < 8.2266] w=0.1944 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)A113.CB) [> 3.4381 = 5.7302 < 7.4493] w=0.1944 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)G41.CA) [> 3.9816 = 6.6361 < 8.6269] w=0.1943 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)C248.CB) [> 3.7307 = 6.2179 < 8.0832] w=0.1931 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)L40.CB) [> 4.1257 = 6.8762 < 8.9391] w=0.1926 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)E252.CB) [> 3.8143 = 6.3571 < 8.2643] w=0.1920 to align # Constraint # added constraint: constraint((T0284)Y212.CB, (T0284)H235.CB) [> 4.1513 = 6.9188 < 8.9944] w=0.1914 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)V232.CB) [> 3.1212 = 5.2021 < 6.7627] w=0.1911 to align # Constraint # added constraint: constraint((T0284)G92.CA, (T0284)K141.CB) [> 4.0639 = 6.7732 < 8.8052] w=0.1897 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)A87.CB) [> 4.0884 = 6.8140 < 8.8582] w=0.1890 to align # Constraint # added constraint: constraint((T0284)L132.CB, (T0284)A162.CB) [> 3.7635 = 6.2725 < 8.1543] w=0.1885 to align # Constraint # added constraint: constraint((T0284)A63.CB, (T0284)D90.CB) [> 3.6524 = 6.0874 < 7.9136] w=0.1885 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)G78.CA) [> 4.4504 = 7.4174 < 9.6426] w=0.1885 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)I133.CB) [> 3.4623 = 5.7705 < 7.5017] w=0.1882 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)E179.CB) [> 4.2884 = 7.1474 < 9.2916] w=0.1881 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)V210.CB) [> 3.8846 = 6.4743 < 8.4166] w=0.1879 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)I242.CB) [> 2.6986 = 4.4977 < 5.8470] w=0.1875 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G41.CA) [> 4.2900 = 7.1500 < 9.2949] w=0.1874 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)Y238.CB) [> 4.0039 = 6.6732 < 8.6752] w=0.1857 to align # Constraint # added constraint: constraint((T0284)P31.CB, (T0284)A81.CB) [> 4.3219 = 7.2032 < 9.3641] w=0.1856 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)A52.CB) [> 3.4571 = 5.7618 < 7.4903] w=0.1845 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)L40.CB) [> 4.2925 = 7.1542 < 9.3005] w=0.1825 to align # Constraint # added constraint: constraint((T0284)T211.CB, (T0284)V228.CB) [> 3.5691 = 5.9486 < 7.7332] w=0.1821 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)C186.CB) [> 3.4255 = 5.7091 < 7.4219] w=0.1805 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)I46.CB) [> 3.2431 = 5.4051 < 7.0266] w=0.1802 to align # Constraint # added constraint: constraint((T0284)A236.CB, (T0284)T245.CB) [> 3.4158 = 5.6929 < 7.4008] w=0.1790 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)G227.CA) [> 4.6297 = 7.7162 < 10.0311] w=0.1768 to align # Constraint # added constraint: constraint((T0284)L16.CB, (T0284)P84.CB) [> 3.8713 = 6.4521 < 8.3877] w=0.1768 to align # Constraint # added constraint: constraint((T0284)S33.CB, (T0284)Y238.CB) [> 4.1436 = 6.9061 < 8.9779] w=0.1761 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)V232.CB) [> 4.0087 = 6.6812 < 8.6856] w=0.1759 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)I156.CB) [> 3.8486 = 6.4143 < 8.3385] w=0.1746 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)A37.CB) [> 3.1493 = 5.2488 < 6.8234] w=0.1739 to align # Constraint # added constraint: constraint((T0284)L17.CB, (T0284)V230.CB) [> 4.1341 = 6.8902 < 8.9572] w=0.1709 to align # Constraint # added constraint: constraint((T0284)L132.CB, (T0284)I165.CB) [> 3.2840 = 5.4734 < 7.1154] w=0.1709 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)D183.CB) [> 4.3919 = 7.3198 < 9.5157] w=0.1706 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)L249.CB) [> 3.5180 = 5.8632 < 7.6222] w=0.1699 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)E137.CB) [> 4.2294 = 7.0490 < 9.1637] w=0.1698 to align # Constraint # added constraint: constraint((T0284)L16.CB, (T0284)V230.CB) [> 4.4238 = 7.3730 < 9.5849] w=0.1698 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)R229.CB) [> 3.4092 = 5.6820 < 7.3866] w=0.1694 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)V190.CB) [> 3.9809 = 6.6348 < 8.6252] w=0.1691 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)L132.CB) [> 4.0680 = 6.7801 < 8.8141] w=0.1651 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)G234.CA) [> 3.6349 = 6.0582 < 7.8757] w=0.1650 to align # Constraint # added constraint: constraint((T0284)S68.CB, (T0284)E105.CB) [> 4.0044 = 6.6739 < 8.6761] w=0.1647 to align # Constraint # added constraint: constraint((T0284)M12.CB, (T0284)L83.CB) [> 4.4871 = 7.4785 < 9.7221] w=0.1639 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)A236.CB) [> 3.5765 = 5.9608 < 7.7490] w=0.1636 to align # Constraint # added constraint: constraint((T0284)R21.CB, (T0284)R229.CB) [> 4.2181 = 7.0302 < 9.1393] w=0.1636 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)D220.CB) [> 3.8702 = 6.4504 < 8.3855] w=0.1631 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G234.CA) [> 3.8217 = 6.3694 < 8.2802] w=0.1627 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)L64.CB) [> 4.1521 = 6.9201 < 8.9961] w=0.1625 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)A37.CB) [> 3.7019 = 6.1698 < 8.0207] w=0.1623 to align # Constraint # added constraint: constraint((T0284)R21.CB, (T0284)E43.CB) [> 2.9820 = 4.9699 < 6.4609] w=0.1595 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)E69.CB) [> 3.5319 = 5.8864 < 7.6523] w=0.1592 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)A237.CB) [> 3.4456 = 5.7426 < 7.4654] w=0.1592 to align # Constraint # added constraint: constraint((T0284)A63.CB, (T0284)H91.CB) [> 3.7608 = 6.2681 < 8.1485] w=0.1592 to align # Constraint # added constraint: constraint((T0284)R14.CB, (T0284)T155.CB) [> 3.6444 = 6.0741 < 7.8963] w=0.1591 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)G227.CA) [> 3.7270 = 6.2116 < 8.0751] w=0.1587 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)G227.CA) [> 4.0903 = 6.8172 < 8.8624] w=0.1586 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)I242.CB) [> 3.4176 = 5.6960 < 7.4048] w=0.1586 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)L154.CB) [> 3.7160 = 6.1933 < 8.0513] w=0.1584 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)A236.CB) [> 4.3270 = 7.2117 < 9.3752] w=0.1583 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)D90.CB) [> 3.8767 = 6.4612 < 8.3996] w=0.1582 to align # Constraint # added constraint: constraint((T0284)L146.CB, (T0284)T155.CB) [> 3.6859 = 6.1432 < 7.9861] w=0.1580 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)G49.CA) [> 4.1116 = 6.8527 < 8.9086] w=0.1580 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)G138.CA) [> 3.3442 = 5.5737 < 7.2458] w=0.1577 to align # Constraint # added constraint: constraint((T0284)R159.CB, (T0284)V170.CB) [> 3.9151 = 6.5251 < 8.4826] w=0.1576 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)N233.CB) [> 4.4759 = 7.4598 < 9.6977] w=0.1574 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)A89.CB) [> 3.9623 = 6.6038 < 8.5850] w=0.1573 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)I65.CB) [> 4.1593 = 6.9321 < 9.0118] w=0.1530 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)L209.CB) [> 3.9121 = 6.5202 < 8.4762] w=0.1528 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)V230.CB) [> 4.4656 = 7.4427 < 9.6755] w=0.1527 to align # Constraint # added constraint: constraint((T0284)V170.CB, (T0284)I185.CB) [> 4.1159 = 6.8598 < 8.9177] w=0.1526 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)A169.CB) [> 3.8333 = 6.3889 < 8.3056] w=0.1523 to align # Constraint # added constraint: constraint((T0284)R191.CB, (T0284)Y212.CB) [> 3.7927 = 6.3212 < 8.2175] w=0.1523 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)E117.CB) [> 4.5622 = 7.6037 < 9.8848] w=0.1519 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)E252.CB) [> 3.7846 = 6.3077 < 8.2001] w=0.1518 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)G181.CA) [> 3.8771 = 6.4619 < 8.4004] w=0.1517 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)R250.CB) [> 3.4619 = 5.7698 < 7.5007] w=0.1509 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)G49.CA) [> 3.6736 = 6.1227 < 7.9595] w=0.1482 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)G92.CA) [> 4.4995 = 7.4991 < 9.7488] w=0.1474 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)H235.CB) [> 3.6269 = 6.0449 < 7.8583] w=0.1473 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)A241.CB) [> 4.2581 = 7.0968 < 9.2258] w=0.1471 to align # Constraint # added constraint: constraint((T0284)L97.CB, (T0284)A144.CB) [> 4.3065 = 7.1775 < 9.3308] w=0.1470 to align # Constraint # added constraint: constraint((T0284)Q216.CB, (T0284)A236.CB) [> 3.8730 = 6.4549 < 8.3914] w=0.1470 to align # Constraint # added constraint: constraint((T0284)C248.CB, (T0284)L265.CB) [> 3.6946 = 6.1576 < 8.0049] w=0.1468 to align # Constraint # added constraint: constraint((T0284)V231.CB, (T0284)L249.CB) [> 3.8845 = 6.4741 < 8.4164] w=0.1463 to align # Constraint # added constraint: constraint((T0284)G41.CA, (T0284)I242.CB) [> 3.4574 = 5.7623 < 7.4910] w=0.1460 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)C248.CB) [> 3.4299 = 5.7166 < 7.4315] w=0.1459 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)I65.CB) [> 3.8769 = 6.4616 < 8.4000] w=0.1458 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)I65.CB) [> 3.3318 = 5.5530 < 7.2189] w=0.1458 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)L249.CB) [> 3.9337 = 6.5561 < 8.5229] w=0.1453 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)Q73.CB) [> 3.7430 = 6.2383 < 8.1097] w=0.1451 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)L47.CB) [> 3.5949 = 5.9915 < 7.7889] w=0.1426 to align # Constraint # added constraint: constraint((T0284)L9.CB, (T0284)G110.CA) [> 3.5673 = 5.9455 < 7.7291] w=0.1415 to align # Constraint # added constraint: constraint((T0284)L9.CB, (T0284)I111.CB) [> 4.1368 = 6.8947 < 8.9631] w=0.1415 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)H235.CB) [> 4.4684 = 7.4474 < 9.6816] w=0.1415 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)H235.CB) [> 3.7395 = 6.2326 < 8.1023] w=0.1415 to align # Constraint # added constraint: constraint((T0284)D131.CB, (T0284)I165.CB) [> 3.7999 = 6.3332 < 8.2331] w=0.1414 to align # Constraint # added constraint: constraint((T0284)E252.CB, (T0284)T261.CB) [> 3.8053 = 6.3422 < 8.2449] w=0.1409 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)G234.CA) [> 4.2930 = 7.1550 < 9.3014] w=0.1407 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)T115.CB) [> 4.3527 = 7.2545 < 9.4309] w=0.1406 to align # Constraint # added constraint: constraint((T0284)N161.CB, (T0284)V190.CB) [> 3.4950 = 5.8250 < 7.5725] w=0.1403 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)G234.CA) [> 4.0484 = 6.7473 < 8.7715] w=0.1388 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)Y238.CB) [> 4.1053 = 6.8422 < 8.8948] w=0.1356 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)G234.CA) [> 4.4189 = 7.3649 < 9.5743] w=0.1356 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)Y238.CB) [> 3.8986 = 6.4978 < 8.4471] w=0.1356 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)V170.CB) [> 3.0986 = 5.1643 < 6.7136] w=0.1353 to align # Constraint # added constraint: constraint((T0284)I171.CB, (T0284)H195.CB) [> 4.3085 = 7.1808 < 9.3350] w=0.1351 to align # Constraint # added constraint: constraint((T0284)F70.CB, (T0284)E105.CB) [> 4.2240 = 7.0400 < 9.1520] w=0.1348 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)T115.CB) [> 3.8744 = 6.4573 < 8.3945] w=0.1346 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)F70.CB) [> 3.6842 = 6.1403 < 7.9824] w=0.1346 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)P152.CB) [> 3.7197 = 6.1995 < 8.0594] w=0.1341 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)R253.CB) [> 4.1373 = 6.8954 < 8.9641] w=0.1334 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)G48.CA) [> 4.0131 = 6.6885 < 8.6950] w=0.1333 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)A81.CB) [> 4.0881 = 6.8135 < 8.8576] w=0.1312 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A37.CB) [> 3.9270 = 6.5449 < 8.5084] w=0.1306 to align # Constraint # added constraint: constraint((T0284)E136.CB, (T0284)A176.CB) [> 4.1922 = 6.9870 < 9.0831] w=0.1291 to align # Constraint # added constraint: constraint((T0284)E251.CB, (T0284)T261.CB) [> 2.9148 = 4.8580 < 6.3153] w=0.1291 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)I65.CB) [> 3.9474 = 6.5791 < 8.5528] w=0.1289 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)V232.CB) [> 4.6879 = 7.8131 < 10.1571] w=0.1288 to align # Constraint # added constraint: constraint((T0284)L121.CB, (T0284)G138.CA) [> 3.3502 = 5.5837 < 7.2589] w=0.1286 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)I242.CB) [> 3.4071 = 5.6785 < 7.3821] w=0.1282 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)A158.CB) [> 3.4946 = 5.8244 < 7.5717] w=0.1281 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)R253.CB) [> 3.6137 = 6.0229 < 7.8298] w=0.1277 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)I165.CB) [> 3.5958 = 5.9930 < 7.7909] w=0.1276 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)N233.CB) [> 3.8793 = 6.4655 < 8.4051] w=0.1276 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)D88.CB) [> 4.0132 = 6.6886 < 8.6952] w=0.1271 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)V256.CB) [> 3.9774 = 6.6290 < 8.6177] w=0.1265 to align # Constraint # added constraint: constraint((T0284)L67.CB, (T0284)L106.CB) [> 4.2476 = 7.0793 < 9.2031] w=0.1248 to align # Constraint # added constraint: constraint((T0284)A63.CB, (T0284)L121.CB) [> 3.2867 = 5.4779 < 7.1213] w=0.1238 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)N233.CB) [> 4.5298 = 7.5496 < 9.8145] w=0.1238 to align # Constraint # added constraint: constraint((T0284)V71.CB, (T0284)I111.CB) [> 4.4281 = 7.3801 < 9.5942] w=0.1238 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)V56.CB) [> 4.0522 = 6.7536 < 8.7797] w=0.1237 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)S50.CB) [> 4.4977 = 7.4962 < 9.7450] w=0.1233 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A52.CB) [> 3.9515 = 6.5859 < 8.5616] w=0.1231 to align # Constraint # added constraint: constraint((T0284)G41.CA, (T0284)A240.CB) [> 3.7944 = 6.3239 < 8.2211] w=0.1228 to align # Constraint # added constraint: constraint((T0284)G138.CA, (T0284)A158.CB) [> 4.4666 = 7.4444 < 9.6777] w=0.1214 to align # Constraint # added constraint: constraint((T0284)Q73.CB, (T0284)A87.CB) [> 4.6184 = 7.6974 < 10.0066] w=0.1179 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)V51.CB) [> 4.4451 = 7.4085 < 9.6310] w=0.1178 to align # Constraint # added constraint: constraint((T0284)M32.CB, (T0284)V80.CB) [> 4.0254 = 6.7090 < 8.7217] w=0.1178 to align # Constraint # added constraint: constraint((T0284)A63.CB, (T0284)Y93.CB) [> 3.6968 = 6.1613 < 8.0097] w=0.1177 to align # Constraint # added constraint: constraint((T0284)Q216.CB, (T0284)H235.CB) [> 3.2602 = 5.4337 < 7.0638] w=0.1174 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)P152.CB) [> 4.1949 = 6.9915 < 9.0889] w=0.1174 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)P152.CB) [> 3.2357 = 5.3928 < 7.0106] w=0.1170 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)D118.CB) [> 3.7666 = 6.2776 < 8.1609] w=0.1169 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)A87.CB) [> 4.1083 = 6.8472 < 8.9013] w=0.1167 to align # Constraint # added constraint: constraint((T0284)D39.CB, (T0284)Y246.CB) [> 3.7976 = 6.3293 < 8.2281] w=0.1165 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)L64.CB) [> 3.3933 = 5.6555 < 7.3521] w=0.1159 to align # Constraint # added constraint: constraint((T0284)A63.CB, (T0284)P122.CB) [> 3.2975 = 5.4958 < 7.1445] w=0.1120 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)Q73.CB) [> 3.7408 = 6.2347 < 8.1051] w=0.1119 to align # Constraint # added constraint: constraint((T0284)D192.CB, (T0284)Y212.CB) [> 3.7765 = 6.2941 < 8.1824] w=0.1117 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)T130.CB) [> 3.8999 = 6.4999 < 8.4499] w=0.1116 to align # Constraint # added constraint: constraint((T0284)L217.CB, (T0284)H235.CB) [> 4.2318 = 7.0530 < 9.1689] w=0.1116 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)D90.CB) [> 3.6584 = 6.0974 < 7.9266] w=0.1114 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)D88.CB) [> 3.6157 = 6.0262 < 7.8341] w=0.1111 to align # Constraint # added constraint: constraint((T0284)I36.CB, (T0284)T245.CB) [> 3.2568 = 5.4280 < 7.0564] w=0.1108 to align # Constraint # added constraint: constraint((T0284)I111.CB, (T0284)P152.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.1106 to align # Constraint # added constraint: constraint((T0284)I36.CB, (T0284)L249.CB) [> 3.7856 = 6.3093 < 8.2021] w=0.1102 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L249.CB) [> 4.0397 = 6.7328 < 8.7527] w=0.1097 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)A63.CB) [> 4.2781 = 7.1301 < 9.2691] w=0.1078 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)A244.CB) [> 3.2155 = 5.3591 < 6.9669] w=0.1062 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)V85.CB) [> 4.6349 = 7.7248 < 10.0422] w=0.1061 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)L120.CB) [> 3.8053 = 6.3422 < 8.2449] w=0.1059 to align # Constraint # added constraint: constraint((T0284)V167.CB, (T0284)L203.CB) [> 4.3822 = 7.3037 < 9.4949] w=0.1059 to align # Constraint # added constraint: constraint((T0284)T130.CB, (T0284)I165.CB) [> 2.7261 = 4.5435 < 5.9065] w=0.1058 to align # Constraint # added constraint: constraint((T0284)T130.CB, (T0284)L164.CB) [> 3.5656 = 5.9426 < 7.7254] w=0.1058 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)Q73.CB) [> 4.0178 = 6.6964 < 8.7053] w=0.1057 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)A240.CB) [> 2.9893 = 4.9822 < 6.4768] w=0.1056 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)L249.CB) [> 4.0390 = 6.7316 < 8.7511] w=0.1045 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)G184.CA) [> 4.4015 = 7.3358 < 9.5366] w=0.1039 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)V135.CB) [> 4.1793 = 6.9656 < 9.0552] w=0.1029 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)I36.CB) [> 4.2203 = 7.0338 < 9.1439] w=0.1006 to align # Constraint # added constraint: constraint((T0284)R218.CB, (T0284)V231.CB) [> 4.0827 = 6.8045 < 8.8458] w=0.1001 to align # Constraint # added constraint: constraint((T0284)Q216.CB, (T0284)N233.CB) [> 3.4658 = 5.7764 < 7.5093] w=0.1001 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)H235.CB) [> 3.7796 = 6.2993 < 8.1890] w=0.1000 to align # Constraint # added constraint: constraint((T0284)A96.CB, (T0284)A148.CB) [> 3.7253 = 6.2089 < 8.0715] w=0.0998 to align # Constraint # added constraint: constraint((T0284)R10.CB, (T0284)R76.CB) [> 3.2843 = 5.4739 < 7.1161] w=0.0997 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)D220.CB) [> 3.9968 = 6.6613 < 8.6597] w=0.0996 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)L57.CB) [> 3.0685 = 5.1142 < 6.6484] w=0.0995 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)L114.CB) [> 3.5905 = 5.9842 < 7.7795] w=0.0995 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)A52.CB) [> 3.6291 = 6.0486 < 7.8632] w=0.0995 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)A240.CB) [> 3.1347 = 5.2246 < 6.7920] w=0.0993 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)V256.CB) [> 3.6305 = 6.0509 < 7.8661] w=0.0990 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)D88.CB) [> 3.7533 = 6.2555 < 8.1321] w=0.0990 to align # Constraint # added constraint: constraint((T0284)R143.CB, (T0284)A182.CB) [> 4.0986 = 6.8310 < 8.8803] w=0.0989 to align # Constraint # added constraint: constraint((T0284)R21.CB, (T0284)V230.CB) [> 3.1697 = 5.2828 < 6.8677] w=0.0982 to align # Constraint # added constraint: constraint((T0284)P122.CB, (T0284)I133.CB) [> 3.6962 = 6.1604 < 8.0085] w=0.0979 to align # Constraint # added constraint: constraint((T0284)N95.CB, (T0284)T119.CB) [> 4.5195 = 7.5326 < 9.7924] w=0.0940 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)T160.CB) [> 4.5924 = 7.6539 < 9.9501] w=0.0939 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)A113.CB) [> 2.9475 = 4.9125 < 6.3863] w=0.0937 to align # Constraint # added constraint: constraint((T0284)I36.CB, (T0284)I242.CB) [> 3.7535 = 6.2559 < 8.1327] w=0.0935 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)A244.CB) [> 3.1934 = 5.3223 < 6.9190] w=0.0932 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L209.CB) [> 4.1092 = 6.8487 < 8.9033] w=0.0930 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)Q73.CB) [> 4.2864 = 7.1441 < 9.2873] w=0.0928 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)L209.CB) [> 4.0536 = 6.7559 < 8.7827] w=0.0927 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)V256.CB) [> 3.5073 = 5.8455 < 7.5991] w=0.0920 to align # Constraint # added constraint: constraint((T0284)G126.CA, (T0284)L164.CB) [> 4.0159 = 6.6931 < 8.7011] w=0.0881 to align # Constraint # added constraint: constraint((T0284)D183.CB, (T0284)L209.CB) [> 3.7501 = 6.2501 < 8.1251] w=0.0880 to align # Constraint # added constraint: constraint((T0284)V190.CB, (T0284)L217.CB) [> 4.0234 = 6.7057 < 8.7174] w=0.0879 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)C186.CB) [> 4.6975 = 7.8292 < 10.1780] w=0.0877 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)L187.CB) [> 3.7406 = 6.2343 < 8.1046] w=0.0877 to align # Constraint # added constraint: constraint((T0284)R191.CB, (T0284)T211.CB) [> 3.3051 = 5.5084 < 7.1610] w=0.0877 to align # Constraint # added constraint: constraint((T0284)V135.CB, (T0284)Y177.CB) [> 4.2763 = 7.1272 < 9.2654] w=0.0877 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)D90.CB) [> 4.1429 = 6.9049 < 8.9763] w=0.0876 to align # Constraint # added constraint: constraint((T0284)L217.CB, (T0284)G234.CA) [> 4.1162 = 6.8603 < 8.9184] w=0.0873 to align # Constraint # added constraint: constraint((T0284)V139.CB, (T0284)A182.CB) [> 3.4546 = 5.7577 < 7.4850] w=0.0872 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)V150.CB) [> 3.8495 = 6.4158 < 8.3405] w=0.0870 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)I46.CB) [> 3.5304 = 5.8840 < 7.6492] w=0.0870 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)L47.CB) [> 4.1354 = 6.8924 < 8.9601] w=0.0860 to align # Constraint # added constraint: constraint((T0284)T130.CB, (T0284)N161.CB) [> 3.3209 = 5.5348 < 7.1952] w=0.0825 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)V232.CB) [> 4.6302 = 7.7170 < 10.0321] w=0.0825 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)A241.CB) [> 4.4279 = 7.3798 < 9.5937] w=0.0825 to align # Constraint # added constraint: constraint((T0284)Q216.CB, (T0284)G234.CA) [> 3.5594 = 5.9324 < 7.7121] w=0.0824 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)D88.CB) [> 4.0955 = 6.8258 < 8.8736] w=0.0824 to align # Constraint # added constraint: constraint((T0284)L132.CB, (T0284)R173.CB) [> 4.1113 = 6.8522 < 8.9079] w=0.0824 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)H91.CB) [> 4.0452 = 6.7421 < 8.7647] w=0.0824 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)I111.CB) [> 3.9072 = 6.5120 < 8.4656] w=0.0823 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)G234.CA) [> 4.0799 = 6.7998 < 8.8398] w=0.0822 to align # Constraint # added constraint: constraint((T0284)D247.CB, (T0284)E264.CB) [> 4.0239 = 6.7064 < 8.7184] w=0.0822 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)A240.CB) [> 4.1643 = 6.9405 < 9.0227] w=0.0821 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)R229.CB) [> 4.3141 = 7.1901 < 9.3472] w=0.0818 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)N98.CB) [> 3.7375 = 6.2292 < 8.0979] w=0.0817 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)D88.CB) [> 3.5598 = 5.9331 < 7.7130] w=0.0817 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)I133.CB) [> 4.3720 = 7.2866 < 9.4726] w=0.0817 to align # Constraint # added constraint: constraint((T0284)G140.CA, (T0284)G181.CA) [> 3.9553 = 6.5921 < 8.5697] w=0.0813 to align # Constraint # added constraint: constraint((T0284)S33.CB, (T0284)T245.CB) [> 3.8672 = 6.4454 < 8.3790] w=0.0808 to align # Constraint # added constraint: constraint((T0284)G126.CA, (T0284)N161.CB) [> 3.7171 = 6.1952 < 8.0538] w=0.0777 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)V80.CB) [> 3.8072 = 6.3454 < 8.2490] w=0.0768 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)A89.CB) [> 3.8772 = 6.4620 < 8.4006] w=0.0766 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)V80.CB) [> 4.5239 = 7.5398 < 9.8018] w=0.0766 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)H235.CB) [> 4.5867 = 7.6444 < 9.9378] w=0.0764 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)G92.CA) [> 4.4894 = 7.4823 < 9.7270] w=0.0764 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)F125.CB) [> 4.0132 = 6.6886 < 8.6952] w=0.0764 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V210.CB) [> 4.3420 = 7.2367 < 9.4076] w=0.0764 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)E251.CB) [> 3.4915 = 5.8192 < 7.5649] w=0.0760 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)A52.CB) [> 3.5575 = 5.9292 < 7.7080] w=0.0759 to align # Constraint # added constraint: constraint((T0284)L54.CB, (T0284)Q73.CB) [> 4.0216 = 6.7026 < 8.7134] w=0.0759 to align # Constraint # added constraint: constraint((T0284)A123.CB, (T0284)I133.CB) [> 3.6416 = 6.0693 < 7.8900] w=0.0759 to align # Constraint # added constraint: constraint((T0284)L57.CB, (T0284)A89.CB) [> 4.2565 = 7.0942 < 9.2224] w=0.0759 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)I77.CB) [> 4.0931 = 6.8218 < 8.8683] w=0.0758 to align # Constraint # added constraint: constraint((T0284)N233.CB, (T0284)C248.CB) [> 4.0353 = 6.7256 < 8.7432] w=0.0757 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)L187.CB) [> 4.1063 = 6.8439 < 8.8970] w=0.0756 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V256.CB) [> 3.3959 = 5.6598 < 7.3577] w=0.0754 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)V85.CB) [> 4.2850 = 7.1417 < 9.2842] w=0.0754 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)L209.CB) [> 4.0413 = 6.7355 < 8.7561] w=0.0754 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)L64.CB) [> 3.3534 = 5.5890 < 7.2657] w=0.0712 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)A241.CB) [> 3.4724 = 5.7874 < 7.5236] w=0.0710 to align # Constraint # added constraint: constraint((T0284)Q216.CB, (T0284)F239.CB) [> 3.8157 = 6.3595 < 8.2674] w=0.0707 to align # Constraint # added constraint: constraint((T0284)L57.CB, (T0284)T66.CB) [> 3.8582 = 6.4304 < 8.3595] w=0.0707 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)L209.CB) [> 4.4764 = 7.4606 < 9.6988] w=0.0707 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)E251.CB) [> 4.1444 = 6.9074 < 8.9796] w=0.0706 to align # Constraint # added constraint: constraint((T0284)E251.CB, (T0284)L260.CB) [> 3.3795 = 5.6324 < 7.3222] w=0.0705 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)R149.CB) [> 4.5628 = 7.6047 < 9.8861] w=0.0705 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)S50.CB) [> 3.7227 = 6.2045 < 8.0658] w=0.0704 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)V230.CB) [> 4.3073 = 7.1788 < 9.3324] w=0.0703 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)I185.CB) [> 3.9468 = 6.5780 < 8.5514] w=0.0700 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)G48.CA) [> 3.8256 = 6.3760 < 8.2888] w=0.0700 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V51.CB) [> 3.6264 = 6.0440 < 7.8572] w=0.0700 to align # Constraint # added constraint: constraint((T0284)L57.CB, (T0284)D88.CB) [> 3.4130 = 5.6884 < 7.3949] w=0.0700 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)H235.CB) [> 3.6251 = 6.0418 < 7.8544] w=0.0700 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)I111.CB) [> 4.0432 = 6.7387 < 8.7603] w=0.0699 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)I185.CB) [> 4.1605 = 6.9342 < 9.0145] w=0.0698 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)S53.CB) [> 3.7557 = 6.2595 < 8.1373] w=0.0697 to align # Constraint # added constraint: constraint((T0284)L217.CB, (T0284)N233.CB) [> 3.1283 = 5.2139 < 6.7780] w=0.0695 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)H235.CB) [> 3.9846 = 6.6410 < 8.6333] w=0.0691 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)L54.CB) [> 4.1144 = 6.8574 < 8.9146] w=0.0689 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)V56.CB) [> 4.4698 = 7.4497 < 9.6846] w=0.0649 to align # Constraint # added constraint: constraint((T0284)S33.CB, (T0284)A240.CB) [> 4.3340 = 7.2234 < 9.3904] w=0.0648 to align # Constraint # added constraint: constraint((T0284)T66.CB, (T0284)Y93.CB) [> 4.3038 = 7.1730 < 9.3249] w=0.0648 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)S129.CB) [> 3.6167 = 6.0279 < 7.8362] w=0.0647 to align # Constraint # added constraint: constraint((T0284)L132.CB, (T0284)T160.CB) [> 4.4338 = 7.3898 < 9.6067] w=0.0647 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)D88.CB) [> 3.7782 = 6.2970 < 8.1861] w=0.0647 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)H235.CB) [> 3.9056 = 6.5093 < 8.4621] w=0.0646 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)A113.CB) [> 4.3054 = 7.1757 < 9.3284] w=0.0646 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)L114.CB) [> 4.5293 = 7.5489 < 9.8135] w=0.0646 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)G184.CA) [> 4.5181 = 7.5302 < 9.7892] w=0.0646 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)H235.CB) [> 4.2340 = 7.0566 < 9.1736] w=0.0645 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)D220.CB) [> 4.0151 = 6.6919 < 8.6994] w=0.0645 to align # Constraint # added constraint: constraint((T0284)A58.CB, (T0284)L67.CB) [> 3.8453 = 6.4089 < 8.3316] w=0.0643 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)S53.CB) [> 4.1676 = 6.9460 < 9.0298] w=0.0641 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)G49.CA) [> 4.2027 = 7.0044 < 9.1058] w=0.0641 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)V232.CB) [> 4.0726 = 6.7877 < 8.8240] w=0.0638 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)A158.CB) [> 4.0949 = 6.8248 < 8.8722] w=0.0637 to align # Constraint # added constraint: constraint((T0284)M32.CB, (T0284)A241.CB) [> 3.8870 = 6.4783 < 8.4218] w=0.0637 to align # Constraint # added constraint: constraint((T0284)L121.CB, (T0284)V135.CB) [> 3.8526 = 6.4211 < 8.3474] w=0.0626 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)D90.CB) [> 4.0317 = 6.7195 < 8.7353] w=0.0598 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)A244.CB) [> 3.6982 = 6.1637 < 8.0128] w=0.0593 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)S53.CB) [> 3.1392 = 5.2320 < 6.8016] w=0.0589 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)L54.CB) [> 3.9915 = 6.6524 < 8.6482] w=0.0589 to align # Constraint # added constraint: constraint((T0284)I36.CB, (T0284)K268.CB) [> 3.7135 = 6.1892 < 8.0459] w=0.0589 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)Q73.CB) [> 3.9132 = 6.5220 < 8.4786] w=0.0588 to align # Constraint # added constraint: constraint((T0284)E251.CB, (T0284)L265.CB) [> 2.6159 = 4.3598 < 5.6677] w=0.0586 to align # Constraint # added constraint: constraint((T0284)F62.CB, (T0284)H91.CB) [> 4.2214 = 7.0356 < 9.1463] w=0.0586 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)L265.CB) [> 3.6568 = 6.0946 < 7.9230] w=0.0586 to align # Constraint # added constraint: constraint((T0284)A244.CB, (T0284)K268.CB) [> 2.9954 = 4.9924 < 6.4901] w=0.0584 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)F62.CB) [> 3.5926 = 5.9876 < 7.7839] w=0.0584 to align # Constraint # added constraint: constraint((T0284)R143.CB, (T0284)I156.CB) [> 3.7281 = 6.2135 < 8.0776] w=0.0584 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)A59.CB) [> 4.1455 = 6.9092 < 8.9820] w=0.0583 to align # Constraint # added constraint: constraint((T0284)L64.CB, (T0284)V99.CB) [> 4.4454 = 7.4090 < 9.6317] w=0.0583 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)L57.CB) [> 4.2527 = 7.0878 < 9.2142] w=0.0583 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)P84.CB) [> 4.4476 = 7.4127 < 9.6365] w=0.0581 to align # Constraint # added constraint: constraint((T0284)N233.CB, (T0284)A244.CB) [> 4.2864 = 7.1440 < 9.2872] w=0.0579 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)C134.CB) [> 3.6591 = 6.0985 < 7.9280] w=0.0578 to align # Constraint # added constraint: constraint((T0284)V135.CB, (T0284)A158.CB) [> 3.8441 = 6.4068 < 8.3289] w=0.0578 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)A113.CB) [> 4.6445 = 7.7409 < 10.0632] w=0.0542 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)V232.CB) [> 4.1660 = 6.9433 < 9.0263] w=0.0536 to align # Constraint # added constraint: constraint((T0284)F62.CB, (T0284)Q124.CB) [> 3.6738 = 6.1231 < 7.9600] w=0.0531 to align # Constraint # added constraint: constraint((T0284)G126.CA, (T0284)V188.CB) [> 3.3812 = 5.6353 < 7.3259] w=0.0531 to align # Constraint # added constraint: constraint((T0284)T66.CB, (T0284)D90.CB) [> 3.5366 = 5.8943 < 7.6626] w=0.0530 to align # Constraint # added constraint: constraint((T0284)F62.CB, (T0284)D88.CB) [> 3.6612 = 6.1019 < 7.9325] w=0.0530 to align # Constraint # added constraint: constraint((T0284)C248.CB, (T0284)L260.CB) [> 3.6255 = 6.0425 < 7.8553] w=0.0529 to align # Constraint # added constraint: constraint((T0284)L64.CB, (T0284)D90.CB) [> 3.6540 = 6.0901 < 7.9171] w=0.0528 to align # Constraint # added constraint: constraint((T0284)D166.CB, (T0284)G189.CA) [> 4.4223 = 7.3705 < 9.5816] w=0.0528 to align # Constraint # added constraint: constraint((T0284)F62.CB, (T0284)A89.CB) [> 3.6521 = 6.0868 < 7.9128] w=0.0528 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)T155.CB) [> 3.5770 = 5.9617 < 7.7502] w=0.0528 to align # Constraint # added constraint: constraint((T0284)L9.CB, (T0284)L83.CB) [> 4.3615 = 7.2691 < 9.4498] w=0.0528 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)A58.CB) [> 4.1285 = 6.8808 < 8.9450] w=0.0527 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)A158.CB) [> 4.1661 = 6.9434 < 9.0265] w=0.0527 to align # Constraint # added constraint: constraint((T0284)A96.CB, (T0284)E147.CB) [> 3.6899 = 6.1498 < 7.9947] w=0.0527 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)W278.CB) [> 3.6752 = 6.1254 < 7.9630] w=0.0525 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)F62.CB) [> 3.3615 = 5.6025 < 7.2833] w=0.0525 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)L57.CB) [> 4.1038 = 6.8397 < 8.8916] w=0.0525 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)L57.CB) [> 3.5540 = 5.9233 < 7.7003] w=0.0525 to align # Constraint # added constraint: constraint((T0284)D168.CB, (T0284)I199.CB) [> 4.2848 = 7.1413 < 9.2837] w=0.0525 to align # Constraint # added constraint: constraint((T0284)A58.CB, (T0284)D88.CB) [> 4.1904 = 6.9839 < 9.0791] w=0.0524 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)G234.CA) [> 4.0814 = 6.8023 < 8.8430] w=0.0523 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)L114.CB) [> 4.0214 = 6.7023 < 8.7130] w=0.0521 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)G49.CA) [> 3.4707 = 5.7846 < 7.5199] w=0.0521 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)D90.CB) [> 3.3950 = 5.6583 < 7.3558] w=0.0519 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)T115.CB) [> 4.3291 = 7.2152 < 9.3797] w=0.0519 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)H235.CB) [> 4.5980 = 7.6634 < 9.9624] w=0.0517 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)I46.CB) [> 4.0584 = 6.7641 < 8.7933] w=0.0517 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)F62.CB) [> 3.4088 = 5.6813 < 7.3857] w=0.0489 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)D90.CB) [> 4.3391 = 7.2319 < 9.4015] w=0.0485 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)P84.CB) [> 4.3089 = 7.1816 < 9.3361] w=0.0484 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)A87.CB) [> 3.9156 = 6.5259 < 8.4837] w=0.0476 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)G49.CA) [> 3.7529 = 6.2547 < 8.1312] w=0.0474 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)G48.CA) [> 3.9954 = 6.6591 < 8.6568] w=0.0472 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)F125.CB) [> 3.6060 = 6.0100 < 7.8130] w=0.0472 to align # Constraint # added constraint: constraint((T0284)E8.CB, (T0284)D151.CB) [> 3.9993 = 6.6655 < 8.6651] w=0.0472 to align # Constraint # added constraint: constraint((T0284)D131.CB, (T0284)L164.CB) [> 3.7799 = 6.2998 < 8.1898] w=0.0472 to align # Constraint # added constraint: constraint((T0284)F13.CB, (T0284)S33.CB) [> 3.3506 = 5.5844 < 7.2597] w=0.0471 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)Q73.CB) [> 4.4932 = 7.4887 < 9.7353] w=0.0471 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)Q73.CB) [> 3.7573 = 6.2622 < 8.1408] w=0.0471 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)T160.CB) [> 3.4617 = 5.7695 < 7.5004] w=0.0470 to align # Constraint # added constraint: constraint((T0284)N95.CB, (T0284)D118.CB) [> 4.1444 = 6.9073 < 8.9795] w=0.0470 to align # Constraint # added constraint: constraint((T0284)E251.CB, (T0284)A262.CB) [> 4.4377 = 7.3962 < 9.6151] w=0.0468 to align # Constraint # added constraint: constraint((T0284)A59.CB, (T0284)Q73.CB) [> 4.0468 = 6.7446 < 8.7680] w=0.0468 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)E251.CB) [> 4.0160 = 6.6933 < 8.7012] w=0.0468 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)A59.CB) [> 3.5669 = 5.9449 < 7.7283] w=0.0467 to align # Constraint # added constraint: constraint((T0284)F239.CB, (T0284)A277.CB) [> 3.7913 = 6.3189 < 8.2145] w=0.0466 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)A277.CB) [> 4.1639 = 6.9399 < 9.0219] w=0.0466 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)L57.CB) [> 4.7135 = 7.8558 < 10.2126] w=0.0466 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)A58.CB) [> 4.0537 = 6.7562 < 8.7831] w=0.0466 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)R82.CB) [> 3.9563 = 6.5938 < 8.5719] w=0.0465 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)A52.CB) [> 3.6487 = 6.0811 < 7.9054] w=0.0465 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)L265.CB) [> 3.4903 = 5.8172 < 7.5623] w=0.0465 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)V150.CB) [> 3.3364 = 5.5607 < 7.2289] w=0.0465 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)G49.CA) [> 3.7986 = 6.3310 < 8.2303] w=0.0464 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)C248.CB) [> 4.5137 = 7.5228 < 9.7796] w=0.0463 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)A112.CB) [> 3.9948 = 6.6581 < 8.6555] w=0.0460 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)S50.CB) [> 4.1314 = 6.8857 < 8.9514] w=0.0460 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)D183.CB) [> 3.8298 = 6.3830 < 8.2980] w=0.0453 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)L64.CB) [> 4.2182 = 7.0303 < 9.1394] w=0.0425 to align # Constraint # added constraint: constraint((T0284)F125.CB, (T0284)N161.CB) [> 3.7993 = 6.3321 < 8.2317] w=0.0423 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)T115.CB) [> 4.6816 = 7.8027 < 10.1436] w=0.0419 to align # Constraint # added constraint: constraint((T0284)S5.CB, (T0284)G110.CA) [> 2.5280 = 4.2133 < 5.4773] w=0.0413 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)L40.CB) [> 4.5485 = 7.5808 < 9.8551] w=0.0412 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)I65.CB) [> 3.3113 = 5.5188 < 7.1744] w=0.0412 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)D220.CB) [> 4.1869 = 6.9781 < 9.0715] w=0.0412 to align # Constraint # added constraint: constraint((T0284)A244.CB, (T0284)D259.CB) [> 3.5645 = 5.9409 < 7.7232] w=0.0412 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)S129.CB) [> 4.2677 = 7.1128 < 9.2467] w=0.0412 to align # Constraint # added constraint: constraint((T0284)T155.CB, (T0284)L187.CB) [> 3.7802 = 6.3004 < 8.1905] w=0.0412 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)D219.CB) [> 3.7324 = 6.2207 < 8.0869] w=0.0411 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)F125.CB) [> 2.8459 = 4.7432 < 6.1662] w=0.0411 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)R127.CB) [> 4.3333 = 7.2222 < 9.3889] w=0.0411 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)A58.CB) [> 3.8167 = 6.3612 < 8.2696] w=0.0411 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)N233.CB) [> 4.3245 = 7.2076 < 9.3698] w=0.0411 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)P60.CB) [> 2.9243 = 4.8738 < 6.3360] w=0.0410 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)V231.CB) [> 3.5517 = 5.9194 < 7.6953] w=0.0410 to align # Constraint # added constraint: constraint((T0284)I142.CB, (T0284)D183.CB) [> 3.9716 = 6.6193 < 8.6051] w=0.0410 to align # Constraint # added constraint: constraint((T0284)L9.CB, (T0284)R82.CB) [> 4.5794 = 7.6323 < 9.9221] w=0.0410 to align # Constraint # added constraint: constraint((T0284)C248.CB, (T0284)Y269.CB) [> 3.4037 = 5.6729 < 7.3747] w=0.0410 to align # Constraint # added constraint: constraint((T0284)N214.CB, (T0284)Y269.CB) [> 3.3314 = 5.5523 < 7.2180] w=0.0410 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)G140.CA) [> 3.9670 = 6.6117 < 8.5952] w=0.0409 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)G234.CA) [> 3.7112 = 6.1854 < 8.0410] w=0.0409 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V232.CB) [> 4.7388 = 7.8980 < 10.2674] w=0.0408 to align # Constraint # added constraint: constraint((T0284)D61.CB, (T0284)D90.CB) [> 3.7830 = 6.3050 < 8.1965] w=0.0408 to align # Constraint # added constraint: constraint((T0284)D61.CB, (T0284)A89.CB) [> 4.4794 = 7.4656 < 9.7053] w=0.0408 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)V231.CB) [> 3.8400 = 6.4000 < 8.3200] w=0.0408 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)V231.CB) [> 3.9498 = 6.5829 < 8.5578] w=0.0407 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)A89.CB) [> 3.6201 = 6.0335 < 7.8436] w=0.0407 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)V210.CB) [> 4.2773 = 7.1288 < 9.2674] w=0.0407 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)L260.CB) [> 3.5938 = 5.9897 < 7.7867] w=0.0407 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)R82.CB) [> 4.0559 = 6.7598 < 8.7878] w=0.0406 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V51.CB) [> 2.7577 = 4.5961 < 5.9750] w=0.0406 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)A89.CB) [> 3.8721 = 6.4535 < 8.3896] w=0.0405 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)S53.CB) [> 3.7906 = 6.3177 < 8.2131] w=0.0401 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)Q73.CB) [> 3.1985 = 5.3309 < 6.9302] w=0.0371 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)A52.CB) [> 4.5054 = 7.5090 < 9.7617] w=0.0371 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)I46.CB) [> 3.9529 = 6.5881 < 8.5645] w=0.0371 to align # Constraint # added constraint: constraint((T0284)S5.CB, (T0284)G78.CA) [> 3.9311 = 6.5519 < 8.5175] w=0.0354 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)A241.CB) [> 4.5029 = 7.5048 < 9.7563] w=0.0354 to align # Constraint # added constraint: constraint((T0284)M32.CB, (T0284)Y269.CB) [> 4.2312 = 7.0521 < 9.1677] w=0.0354 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)C186.CB) [> 4.3270 = 7.2116 < 9.3751] w=0.0354 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)V85.CB) [> 4.4789 = 7.4648 < 9.7042] w=0.0354 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)K128.CB) [> 4.7376 = 7.8960 < 10.2648] w=0.0353 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)L54.CB) [> 4.3722 = 7.2870 < 9.4731] w=0.0353 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)H91.CB) [> 3.7194 = 6.1991 < 8.0588] w=0.0353 to align # Constraint # added constraint: constraint((T0284)F125.CB, (T0284)C134.CB) [> 4.2337 = 7.0562 < 9.1731] w=0.0353 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)V232.CB) [> 4.3927 = 7.3211 < 9.5175] w=0.0353 to align # Constraint # added constraint: constraint((T0284)S5.CB, (T0284)Q73.CB) [> 4.1773 = 6.9622 < 9.0509] w=0.0353 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)T115.CB) [> 4.7106 = 7.8510 < 10.2063] w=0.0353 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)L265.CB) [> 3.6092 = 6.0153 < 7.8199] w=0.0352 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)S50.CB) [> 3.7946 = 6.3243 < 8.2216] w=0.0352 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)P60.CB) [> 3.6256 = 6.0426 < 7.8554] w=0.0352 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)C134.CB) [> 3.8069 = 6.3448 < 8.2483] w=0.0352 to align # Constraint # added constraint: constraint((T0284)I133.CB, (T0284)I165.CB) [> 4.1090 = 6.8483 < 8.9028] w=0.0351 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)L209.CB) [> 4.4087 = 7.3478 < 9.5522] w=0.0351 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)A112.CB) [> 4.4346 = 7.3910 < 9.6083] w=0.0351 to align # Constraint # added constraint: constraint((T0284)C134.CB, (T0284)R173.CB) [> 4.6297 = 7.7161 < 10.0310] w=0.0351 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)T130.CB) [> 4.1859 = 6.9765 < 9.0694] w=0.0351 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)Y269.CB) [> 3.5117 = 5.8527 < 7.6086] w=0.0350 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)D259.CB) [> 3.9732 = 6.6221 < 8.6087] w=0.0350 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)Q73.CB) [> 4.0414 = 6.7357 < 8.7564] w=0.0350 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)A37.CB) [> 4.3748 = 7.2913 < 9.4786] w=0.0349 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)A224.CB) [> 4.3639 = 7.2732 < 9.4551] w=0.0348 to align # Constraint # added constraint: constraint((T0284)A58.CB, (T0284)A87.CB) [> 3.4204 = 5.7007 < 7.4109] w=0.0348 to align # Constraint # added constraint: constraint((T0284)A59.CB, (T0284)D88.CB) [> 4.3603 = 7.2672 < 9.4474] w=0.0348 to align # Constraint # added constraint: constraint((T0284)A59.CB, (T0284)A89.CB) [> 2.9896 = 4.9827 < 6.4775] w=0.0348 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)T115.CB) [> 3.5226 = 5.8709 < 7.6322] w=0.0348 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)V230.CB) [> 4.5727 = 7.6211 < 9.9075] w=0.0348 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)S266.CB) [> 3.9597 = 6.5995 < 8.5793] w=0.0347 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)S50.CB) [> 4.3327 = 7.2212 < 9.3875] w=0.0347 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)D220.CB) [> 4.4083 = 7.3471 < 9.5513] w=0.0346 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)D90.CB) [> 3.7220 = 6.2033 < 8.0643] w=0.0343 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L40.CB) [> 4.6522 = 7.7536 < 10.0797] w=0.0342 to align # Constraint # added constraint: constraint((T0284)F42.CB, (T0284)P84.CB) [> 4.7407 = 7.9012 < 10.2715] w=0.0342 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)A113.CB) [> 4.6070 = 7.6783 < 9.9818] w=0.0341 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)D192.CB) [> 3.8909 = 6.4848 < 8.4302] w=0.0340 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)I185.CB) [> 4.2244 = 7.0407 < 9.1529] w=0.0338 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)V232.CB) [> 3.9910 = 6.6516 < 8.6471] w=0.0332 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)T115.CB) [> 4.1309 = 6.8848 < 8.9502] w=0.0328 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)D90.CB) [> 4.4040 = 7.3399 < 9.5419] w=0.0295 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)G140.CA) [> 3.9771 = 6.6284 < 8.6170] w=0.0295 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)S50.CB) [> 4.0134 = 6.6891 < 8.6958] w=0.0295 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)H91.CB) [> 2.6911 = 4.4852 < 5.8308] w=0.0295 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)A224.CB) [> 4.1952 = 6.9920 < 9.0896] w=0.0295 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)Q73.CB) [> 3.8102 = 6.3503 < 8.2554] w=0.0295 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)A224.CB) [> 4.5342 = 7.5570 < 9.8241] w=0.0294 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)C186.CB) [> 4.5405 = 7.5676 < 9.8378] w=0.0294 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)T115.CB) [> 4.5572 = 7.5954 < 9.8740] w=0.0294 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)R229.CB) [> 4.5755 = 7.6259 < 9.9136] w=0.0294 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)N233.CB) [> 2.5796 = 4.2993 < 5.5891] w=0.0294 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)A262.CB) [> 3.2901 = 5.4834 < 7.1284] w=0.0294 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)S266.CB) [> 3.9997 = 6.6661 < 8.6659] w=0.0294 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)T155.CB) [> 4.5903 = 7.6505 < 9.9457] w=0.0293 to align # Constraint # added constraint: constraint((T0284)G184.CA, (T0284)V231.CB) [> 4.2012 = 7.0020 < 9.1026] w=0.0293 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)N233.CB) [> 4.4632 = 7.4386 < 9.6702] w=0.0293 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)C134.CB) [> 3.2201 = 5.3668 < 6.9769] w=0.0293 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)A87.CB) [> 3.8001 = 6.3335 < 8.2335] w=0.0293 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)L187.CB) [> 4.6665 = 7.7775 < 10.1108] w=0.0292 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)H235.CB) [> 4.2939 = 7.1564 < 9.3034] w=0.0291 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)R82.CB) [> 4.5857 = 7.6428 < 9.9356] w=0.0291 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)L260.CB) [> 4.2569 = 7.0949 < 9.2234] w=0.0291 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)A89.CB) [> 3.8324 = 6.3874 < 8.3036] w=0.0291 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)V230.CB) [> 4.3339 = 7.2232 < 9.3902] w=0.0290 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)A240.CB) [> 3.8379 = 6.3965 < 8.3154] w=0.0290 to align # Constraint # added constraint: constraint((T0284)A144.CB, (T0284)A153.CB) [> 4.6078 = 7.6797 < 9.9836] w=0.0289 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)P84.CB) [> 4.6875 = 7.8125 < 10.1563] w=0.0289 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)A221.CB) [> 4.6424 = 7.7373 < 10.0584] w=0.0289 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)G234.CA) [> 4.3197 = 7.1996 < 9.3595] w=0.0284 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)G45.CA) [> 3.3126 = 5.5210 < 7.1774] w=0.0283 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)G184.CA) [> 3.1796 = 5.2993 < 6.8891] w=0.0282 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)L209.CB) [> 4.5629 = 7.6048 < 9.8862] w=0.0273 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)V230.CB) [> 4.6267 = 7.7111 < 10.0245] w=0.0273 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)A144.CB) [> 4.2899 = 7.1498 < 9.2947] w=0.0247 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)C186.CB) [> 4.6703 = 7.7839 < 10.1190] w=0.0244 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)Q55.CB) [> 4.4946 = 7.4911 < 9.7384] w=0.0236 to align # Constraint # added constraint: constraint((T0284)E251.CB, (T0284)F271.CB) [> 2.1313 = 3.5521 < 4.6178] w=0.0236 to align # Constraint # added constraint: constraint((T0284)C248.CB, (T0284)W278.CB) [> 3.8645 = 6.4408 < 8.3730] w=0.0236 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)Y282.CB) [> 3.3354 = 5.5590 < 7.2267] w=0.0236 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)Y282.CB) [> 4.5635 = 7.6059 < 9.8877] w=0.0236 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)W278.CB) [> 4.2391 = 7.0652 < 9.1847] w=0.0236 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)V210.CB) [> 4.1245 = 6.8741 < 8.9363] w=0.0236 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)V210.CB) [> 4.5436 = 7.5727 < 9.8445] w=0.0236 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)S53.CB) [> 4.1231 = 6.8717 < 8.9333] w=0.0236 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)C248.CB) [> 3.7708 = 6.2846 < 8.1700] w=0.0236 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)C44.CB) [> 3.6069 = 6.0115 < 7.8150] w=0.0235 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)A240.CB) [> 4.5001 = 7.5002 < 9.7503] w=0.0235 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)N233.CB) [> 4.4924 = 7.4874 < 9.7336] w=0.0235 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)T119.CB) [> 4.2601 = 7.1002 < 9.2302] w=0.0235 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)A144.CB) [> 4.4090 = 7.3483 < 9.5528] w=0.0235 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)S50.CB) [> 3.2390 = 5.3984 < 7.0179] w=0.0235 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)V51.CB) [> 4.3458 = 7.2430 < 9.4159] w=0.0235 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)A52.CB) [> 3.2866 = 5.4777 < 7.1209] w=0.0235 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)S53.CB) [> 3.9832 = 6.6386 < 8.6302] w=0.0235 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)A262.CB) [> 4.0161 = 6.6935 < 8.7015] w=0.0235 to align # Constraint # added constraint: constraint((T0284)V231.CB, (T0284)C248.CB) [> 4.1397 = 6.8994 < 8.9693] w=0.0235 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)A87.CB) [> 4.0860 = 6.8101 < 8.8531] w=0.0235 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)A37.CB) [> 4.3125 = 7.1876 < 9.3439] w=0.0235 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)T130.CB) [> 3.6648 = 6.1081 < 7.9405] w=0.0235 to align # Constraint # added constraint: constraint((T0284)G234.CA, (T0284)F271.CB) [> 4.5559 = 7.5932 < 9.8712] w=0.0234 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)H235.CB) [> 3.1030 = 5.1716 < 6.7231] w=0.0234 to align # Constraint # added constraint: constraint((T0284)G234.CA, (T0284)C248.CB) [> 3.8379 = 6.3965 < 8.3154] w=0.0234 to align # Constraint # added constraint: constraint((T0284)V232.CB, (T0284)C248.CB) [> 4.0236 = 6.7060 < 8.7178] w=0.0234 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)A87.CB) [> 3.5755 = 5.9591 < 7.7469] w=0.0234 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)F271.CB) [> 3.7722 = 6.2871 < 8.1732] w=0.0233 to align # Constraint # added constraint: constraint((T0284)S129.CB, (T0284)L164.CB) [> 4.1099 = 6.8498 < 8.9047] w=0.0233 to align # Constraint # added constraint: constraint((T0284)V167.CB, (T0284)D220.CB) [> 4.2940 = 7.1566 < 9.3036] w=0.0233 to align # Constraint # added constraint: constraint((T0284)V167.CB, (T0284)A221.CB) [> 2.7668 = 4.6113 < 5.9946] w=0.0233 to align # Constraint # added constraint: constraint((T0284)H235.CB, (T0284)C248.CB) [> 2.9845 = 4.9741 < 6.4664] w=0.0233 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)I156.CB) [> 4.4595 = 7.4325 < 9.6623] w=0.0233 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)H91.CB) [> 4.0853 = 6.8088 < 8.8515] w=0.0232 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)P84.CB) [> 4.0389 = 6.7315 < 8.7510] w=0.0231 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V210.CB) [> 3.8652 = 6.4420 < 8.3745] w=0.0228 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)L209.CB) [> 4.2204 = 7.0340 < 9.1443] w=0.0227 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)V232.CB) [> 4.0739 = 6.7898 < 8.8267] w=0.0224 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)A113.CB) [> 4.6380 = 7.7300 < 10.0490] w=0.0224 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)C134.CB) [> 3.5207 = 5.8678 < 7.6281] w=0.0217 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)L40.CB) [> 4.4508 = 7.4180 < 9.6435] w=0.0182 to align # Constraint # added constraint: constraint((T0284)R127.CB, (T0284)G140.CA) [> 3.6734 = 6.1223 < 7.9590] w=0.0182 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)H235.CB) [> 4.2682 = 7.1136 < 9.2477] w=0.0177 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)S129.CB) [> 4.0652 = 6.7753 < 8.8079] w=0.0177 to align # Constraint # added constraint: constraint((T0284)L121.CB, (T0284)A144.CB) [> 3.1329 = 5.2216 < 6.7881] w=0.0177 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)P84.CB) [> 4.7459 = 7.9098 < 10.2828] w=0.0177 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)D220.CB) [> 3.3065 = 5.5109 < 7.1641] w=0.0177 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)A89.CB) [> 3.2415 = 5.4026 < 7.0233] w=0.0177 to align # Constraint # added constraint: constraint((T0284)L223.CB, (T0284)Y282.CB) [> 3.8755 = 6.4592 < 8.3970] w=0.0177 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)Y282.CB) [> 2.6709 = 4.4514 < 5.7869] w=0.0177 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)M283.CB) [> 4.5883 = 7.6473 < 9.9414] w=0.0177 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)I185.CB) [> 4.4747 = 7.4579 < 9.6953] w=0.0177 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)A113.CB) [> 4.2367 = 7.0612 < 9.1795] w=0.0176 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)V56.CB) [> 3.9769 = 6.6281 < 8.6166] w=0.0176 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)A87.CB) [> 3.1818 = 5.3030 < 6.8939] w=0.0176 to align # Constraint # added constraint: constraint((T0284)V56.CB, (T0284)D88.CB) [> 4.0316 = 6.7193 < 8.7351] w=0.0176 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)V51.CB) [> 3.1007 = 5.1678 < 6.7182] w=0.0176 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)A87.CB) [> 3.8602 = 6.4338 < 8.3639] w=0.0176 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)A89.CB) [> 4.5490 = 7.5817 < 9.8562] w=0.0176 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)G234.CA) [> 4.4569 = 7.4282 < 9.6566] w=0.0176 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)V231.CB) [> 4.7596 = 7.9326 < 10.3124] w=0.0176 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)T119.CB) [> 4.1221 = 6.8702 < 8.9313] w=0.0176 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)D131.CB) [> 2.8737 = 4.7895 < 6.2264] w=0.0176 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)G234.CA) [> 3.1616 = 5.2694 < 6.8502] w=0.0176 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)K128.CB) [> 3.8935 = 6.4892 < 8.4359] w=0.0176 to align # Constraint # added constraint: constraint((T0284)Q73.CB, (T0284)V85.CB) [> 4.6570 = 7.7617 < 10.0902] w=0.0176 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)D131.CB) [> 4.1588 = 6.9313 < 9.0107] w=0.0175 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)A89.CB) [> 4.7517 = 7.9196 < 10.2955] w=0.0175 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)H91.CB) [> 4.2759 = 7.1265 < 9.2645] w=0.0174 to align # Constraint # added constraint: constraint((T0284)Q73.CB, (T0284)P84.CB) [> 4.3543 = 7.2571 < 9.4342] w=0.0173 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)T155.CB) [> 4.4589 = 7.4315 < 9.6610] w=0.0172 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)V232.CB) [> 4.0085 = 6.6809 < 8.6851] w=0.0171 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)G234.CA) [> 4.7360 = 7.8933 < 10.2613] w=0.0169 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)L187.CB) [> 3.7369 = 6.2281 < 8.0966] w=0.0165 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)C186.CB) [> 3.6149 = 6.0248 < 7.8322] w=0.0165 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)G234.CA) [> 4.0087 = 6.6811 < 8.6854] w=0.0154 to align # Constraint # added constraint: constraint((T0284)M32.CB, (T0284)H235.CB) [> 3.9485 = 6.5809 < 8.5552] w=0.0124 to align # Constraint # added constraint: constraint((T0284)L187.CB, (T0284)N233.CB) [> 4.5728 = 7.6213 < 9.9078] w=0.0121 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A224.CB) [> 4.5143 = 7.5239 < 9.7811] w=0.0118 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A221.CB) [> 4.2667 = 7.1112 < 9.2446] w=0.0118 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)D220.CB) [> 4.4589 = 7.4315 < 9.6609] w=0.0118 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)D220.CB) [> 3.8813 = 6.4688 < 8.4094] w=0.0118 to align # Constraint # added constraint: constraint((T0284)Q55.CB, (T0284)A224.CB) [> 2.7782 = 4.6304 < 6.0195] w=0.0118 to align # Constraint # added constraint: constraint((T0284)C186.CB, (T0284)D220.CB) [> 4.1165 = 6.8608 < 8.9191] w=0.0118 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)A221.CB) [> 4.7200 = 7.8667 < 10.2267] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)D220.CB) [> 4.1504 = 6.9173 < 8.9925] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)A221.CB) [> 3.5822 = 5.9703 < 7.7614] w=0.0118 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)A221.CB) [> 3.9113 = 6.5189 < 8.4746] w=0.0118 to align # Constraint # added constraint: constraint((T0284)N233.CB, (T0284)E251.CB) [> 3.5803 = 5.9671 < 7.7572] w=0.0118 to align # Constraint # added constraint: constraint((T0284)G234.CA, (T0284)E251.CB) [> 2.9516 = 4.9194 < 6.3952] w=0.0118 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)M283.CB) [> 3.3137 = 5.5229 < 7.1797] w=0.0118 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)A158.CB) [> 4.3037 = 7.1728 < 9.3247] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)D88.CB) [> 4.5224 = 7.5373 < 9.7985] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)E43.CB) [> 3.8505 = 6.4174 < 8.3427] w=0.0118 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)A87.CB) [> 3.2616 = 5.4361 < 7.0669] w=0.0118 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)D88.CB) [> 4.3491 = 7.2485 < 9.4231] w=0.0118 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)I156.CB) [> 4.5660 = 7.6100 < 9.8930] w=0.0118 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)H91.CB) [> 3.8231 = 6.3719 < 8.2835] w=0.0118 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)I156.CB) [> 4.2494 = 7.0823 < 9.2070] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)L120.CB) [> 4.7609 = 7.9349 < 10.3153] w=0.0118 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)V85.CB) [> 3.7786 = 6.2977 < 8.1870] w=0.0118 to align # Constraint # added constraint: constraint((T0284)S53.CB, (T0284)V85.CB) [> 3.7775 = 6.2959 < 8.1846] w=0.0118 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)D118.CB) [> 3.8027 = 6.3379 < 8.2393] w=0.0117 to align # Constraint # added constraint: constraint((T0284)C134.CB, (T0284)A158.CB) [> 4.4141 = 7.3569 < 9.5640] w=0.0117 to align # Constraint # added constraint: constraint((T0284)C134.CB, (T0284)I156.CB) [> 4.0188 = 6.6980 < 8.7074] w=0.0117 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)V210.CB) [> 4.4456 = 7.4094 < 9.6322] w=0.0117 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)L120.CB) [> 3.8043 = 6.3405 < 8.2427] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)T119.CB) [> 3.7298 = 6.2163 < 8.0812] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)N233.CB) [> 4.7642 = 7.9404 < 10.3225] w=0.0117 to align # Constraint # added constraint: constraint((T0284)D220.CB, (T0284)V232.CB) [> 4.0196 = 6.6993 < 8.7091] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A224.CB, (T0284)H235.CB) [> 4.6492 = 7.7487 < 10.0733] w=0.0117 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)S129.CB) [> 3.6570 = 6.0950 < 7.9235] w=0.0117 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)V210.CB) [> 3.9955 = 6.6591 < 8.6568] w=0.0117 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)H235.CB) [> 2.8103 = 4.6839 < 6.0891] w=0.0117 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)M32.CB) [> 4.5100 = 7.5167 < 9.7717] w=0.0117 to align # Constraint # added constraint: constraint((T0284)V210.CB, (T0284)H235.CB) [> 4.4628 = 7.4380 < 9.6695] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)V51.CB) [> 3.8868 = 6.4780 < 8.4214] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)G49.CA) [> 4.0600 = 6.7667 < 8.7967] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)G48.CA) [> 2.6986 = 4.4977 < 5.8471] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)T119.CB) [> 2.2723 = 3.7872 < 4.9233] w=0.0117 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)C186.CB) [> 4.7266 = 7.8777 < 10.2410] w=0.0117 to align # Constraint # added constraint: constraint((T0284)A221.CB, (T0284)V231.CB) [> 4.5121 = 7.5201 < 9.7761] w=0.0117 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)L114.CB) [> 4.6983 = 7.8305 < 10.1796] w=0.0117 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)C186.CB) [> 4.6788 = 7.7980 < 10.1374] w=0.0117 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)A87.CB) [> 4.3403 = 7.2338 < 9.4040] w=0.0116 to align # Constraint # added constraint: constraint((T0284)D30.CB, (T0284)V232.CB) [> 4.6116 = 7.6860 < 9.9919] w=0.0116 to align # Constraint # added constraint: constraint((T0284)M32.CB, (T0284)G49.CA) [> 2.5474 = 4.2456 < 5.5193] w=0.0116 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)V167.CB) [> 4.4984 = 7.4973 < 9.7465] w=0.0116 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A89.CB) [> 4.3326 = 7.2210 < 9.3872] w=0.0116 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)A87.CB) [> 3.7685 = 6.2809 < 8.1651] w=0.0116 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)T160.CB) [> 3.6923 = 6.1537 < 7.9999] w=0.0115 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)V230.CB) [> 4.5584 = 7.5973 < 9.8765] w=0.0115 to align # Constraint # added constraint: constraint((T0284)L120.CB, (T0284)T155.CB) [> 4.5647 = 7.6078 < 9.8901] w=0.0115 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)S53.CB) [> 3.2650 = 5.4417 < 7.0743] w=0.0115 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)T155.CB) [> 3.5249 = 5.8749 < 7.6374] w=0.0115 to align # Constraint # added constraint: constraint((T0284)L40.CB, (T0284)E251.CB) [> 3.5600 = 5.9334 < 7.7134] w=0.0114 to align # Constraint # added constraint: constraint((T0284)L175.CB, (T0284)I185.CB) [> 4.5290 = 7.5483 < 9.8128] w=0.0112 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)L209.CB) [> 3.8698 = 6.4497 < 8.3846] w=0.0107 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)V231.CB) [> 3.5666 = 5.9443 < 7.7276] w=0.0106 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)V231.CB) [> 4.4305 = 7.3842 < 9.5994] w=0.0106 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)V230.CB) [> 3.6449 = 6.0748 < 7.8973] w=0.0106 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)A113.CB) [> 3.8153 = 6.3589 < 8.2665] w=0.0106 to align # Constraint # added constraint: constraint((T0284)L209.CB, (T0284)G234.CA) [> 4.2620 = 7.1033 < 9.2342] w=0.0096 to align # Constraint # added constraint: constraint((T0284)T115.CB, (T0284)G234.CA) [> 4.7996 = 7.9993 < 10.3991] w=0.0096 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)V232.CB) [> 4.4782 = 7.4636 < 9.7027] w=0.0096 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)V230.CB) [> 4.7489 = 7.9148 < 10.2892] w=0.0096 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)I185.CB) [> 4.2211 = 7.0352 < 9.1458] w=0.0074 to align # Constraint # added constraint: constraint((T0284)L175.CB, (T0284)C248.CB) [> 2.9007 = 4.8345 < 6.2849] w=0.0065 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)V232.CB) [> 3.0661 = 5.1102 < 6.6432] w=0.0065 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)A113.CB) [> 4.3911 = 7.3186 < 9.5142] w=0.0060 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)V210.CB) [> 4.5511 = 7.5851 < 9.8606] w=0.0059 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)D220.CB) [> 4.6651 = 7.7752 < 10.1077] w=0.0059 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)E251.CB) [> 4.7345 = 7.8908 < 10.2581] w=0.0059 to align # Constraint # added constraint: constraint((T0284)Y269.CB, (T0284)M283.CB) [> 4.3637 = 7.2728 < 9.4546] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V232.CB, (T0284)E251.CB) [> 4.5450 = 7.5749 < 9.8474] w=0.0059 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)V210.CB) [> 4.5808 = 7.6347 < 9.9251] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)T160.CB) [> 4.5503 = 7.5838 < 9.8589] w=0.0059 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)T115.CB) [> 3.8005 = 6.3342 < 8.2344] w=0.0059 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)D90.CB) [> 3.6813 = 6.1356 < 7.9762] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)R229.CB) [> 4.7905 = 7.9841 < 10.3794] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)V210.CB) [> 4.0613 = 6.7689 < 8.7995] w=0.0059 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)V210.CB) [> 4.3173 = 7.1955 < 9.3541] w=0.0059 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)L40.CB) [> 2.7361 = 4.5602 < 5.9282] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)L47.CB) [> 4.6281 = 7.7134 < 10.0275] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)D118.CB) [> 4.2741 = 7.1234 < 9.2605] w=0.0059 to align # Constraint # added constraint: constraint((T0284)S50.CB, (T0284)D118.CB) [> 4.6584 = 7.7640 < 10.0932] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)D118.CB) [> 2.5914 = 4.3190 < 5.6147] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)A158.CB) [> 4.6581 = 7.7634 < 10.0925] w=0.0059 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)G234.CA) [> 4.3043 = 7.1738 < 9.3259] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)D88.CB) [> 4.7681 = 7.9468 < 10.3308] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)C44.CB) [> 3.9621 = 6.6035 < 8.5845] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)I156.CB) [> 4.6762 = 7.7937 < 10.1317] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)A158.CB) [> 4.2985 = 7.1641 < 9.3134] w=0.0059 to align # Constraint # added constraint: constraint((T0284)M1.CB, (T0284)G49.CA) [> 3.6754 = 6.1257 < 7.9634] w=0.0059 to align # Constraint # added constraint: constraint((T0284)M1.CB, (T0284)G234.CA) [> 4.4570 = 7.4283 < 9.6568] w=0.0059 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)C44.CB) [> 3.6314 = 6.0523 < 7.8680] w=0.0059 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)F42.CB) [> 3.1470 = 5.2450 < 6.8184] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V231.CB) [> 3.9862 = 6.6436 < 8.6367] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V230.CB) [> 3.2780 = 5.4633 < 7.1022] w=0.0059 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)R229.CB) [> 4.1996 = 6.9994 < 9.0992] w=0.0059 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)L114.CB) [> 4.3686 = 7.2811 < 9.4654] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)P84.CB) [> 4.6877 = 7.8128 < 10.1566] w=0.0059 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)H91.CB) [> 4.6448 = 7.7414 < 10.0638] w=0.0059 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)L187.CB) [> 3.0452 = 5.0754 < 6.5980] w=0.0059 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)D90.CB) [> 4.1661 = 6.9435 < 9.0265] w=0.0059 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)V210.CB) [> 4.7535 = 7.9226 < 10.2993] w=0.0059 to align # Constraint # added constraint: constraint((T0284)V51.CB, (T0284)V232.CB) [> 4.7939 = 7.9898 < 10.3868] w=0.0059 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)A52.CB) [> 3.9523 = 6.5871 < 8.5632] w=0.0059 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)V51.CB) [> 2.3829 = 3.9715 < 5.1630] w=0.0059 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)S50.CB) [> 4.4852 = 7.4753 < 9.7179] w=0.0059 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G49.CA) [> 3.8277 = 6.3794 < 8.2933] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)H91.CB) [> 2.3268 = 3.8781 < 5.0415] w=0.0059 to align # Constraint # added constraint: constraint((T0284)Q73.CB, (T0284)A158.CB) [> 4.7287 = 7.8811 < 10.2455] w=0.0059 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)T155.CB) [> 3.4722 = 5.7870 < 7.5230] w=0.0059 to align # Constraint # added constraint: constraint((T0284)E43.CB, (T0284)I156.CB) [> 4.3741 = 7.2901 < 9.4771] w=0.0059 to align # Constraint # added constraint: constraint((T0284)C44.CB, (T0284)I156.CB) [> 3.2243 = 5.3738 < 6.9859] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)I156.CB) [> 3.9710 = 6.6184 < 8.6039] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)A158.CB) [> 3.6250 = 6.0417 < 7.8542] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)C186.CB) [> 3.7452 = 6.2420 < 8.1146] w=0.0059 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)A158.CB) [> 2.6067 = 4.3445 < 5.6478] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)A158.CB) [> 4.3479 = 7.2465 < 9.4204] w=0.0059 to align # Constraint # added constraint: constraint((T0284)G48.CA, (T0284)T160.CB) [> 3.8943 = 6.4905 < 8.4376] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)V210.CB) [> 3.5960 = 5.9934 < 7.7914] w=0.0059 to align # Constraint # added constraint: constraint((T0284)D90.CB, (T0284)T160.CB) [> 4.4567 = 7.4278 < 9.6562] w=0.0059 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)V232.CB) [> 4.4645 = 7.4408 < 9.6731] w=0.0059 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)V85.CB) [> 4.4738 = 7.4563 < 9.6932] w=0.0059 to align # Constraint # added constraint: constraint((T0284)D118.CB, (T0284)T155.CB) [> 4.0942 = 6.8237 < 8.8708] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)C186.CB) [> 4.3293 = 7.2155 < 9.3801] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A37.CB, (T0284)R79.CB) [> 4.2847 = 7.1412 < 9.2835] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)V85.CB) [> 4.7952 = 7.9921 < 10.3897] w=0.0058 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)H235.CB) [> 3.3322 = 5.5537 < 7.2198] w=0.0058 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)L209.CB) [> 4.2266 = 7.0443 < 9.1576] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)C186.CB) [> 4.7786 = 7.9644 < 10.3537] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)L209.CB) [> 4.4140 = 7.3567 < 9.5638] w=0.0058 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)L114.CB) [> 2.6942 = 4.4904 < 5.8375] w=0.0058 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L114.CB) [> 3.9039 = 6.5066 < 8.4585] w=0.0058 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)S50.CB) [> 4.3333 = 7.2222 < 9.3889] w=0.0058 to align # Constraint # added constraint: constraint((T0284)I46.CB, (T0284)V230.CB) [> 3.8448 = 6.4080 < 8.3304] w=0.0058 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)V230.CB) [> 3.8745 = 6.4574 < 8.3947] w=0.0058 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)G234.CA) [> 4.0048 = 6.6747 < 8.6770] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A52.CB, (T0284)H235.CB) [> 3.5677 = 5.9462 < 7.7300] w=0.0058 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)H235.CB) [> 3.7281 = 6.2135 < 8.0776] w=0.0058 to align # Constraint # added constraint: constraint((T0284)T119.CB, (T0284)G234.CA) [> 3.2677 = 5.4462 < 7.0800] w=0.0058 to align # Constraint # added constraint: constraint((T0284)H91.CB, (T0284)A158.CB) [> 4.7519 = 7.9199 < 10.2959] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)A158.CB) [> 4.3147 = 7.1912 < 9.3486] w=0.0058 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)I156.CB) [> 4.6882 = 7.8136 < 10.1577] w=0.0058 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)V210.CB) [> 4.6587 = 7.7645 < 10.0939] w=0.0058 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)I156.CB) [> 4.1756 = 6.9594 < 9.0472] w=0.0058 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)A87.CB) [> 2.7395 = 4.5659 < 5.9356] w=0.0057 to align # Constraint # added constraint: constraint((T0284)V28.CB, (T0284)T115.CB) [> 3.8140 = 6.3566 < 8.2636] w=0.0057 to align # Constraint # added constraint: constraint((T0284)G49.CA, (T0284)A158.CB) [> 4.5464 = 7.5773 < 9.8505] w=0.0057 to align # Constraint # added constraint: constraint((T0284)I156.CB, (T0284)R229.CB) [> 3.6133 = 6.0222 < 7.8288] w=0.0056 to align # Constraint # added constraint: constraint((T0284)A158.CB, (T0284)V232.CB) [> 4.6168 = 7.6946 < 10.0030] w=0.0056 to align # Constraint # added constraint: constraint((T0284)L114.CB, (T0284)A158.CB) [> 3.3251 = 5.5418 < 7.2044] w=0.0056 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)I156.CB) [> 3.7022 = 6.1703 < 8.0214] w=0.0056 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)T160.CB) [> 3.7906 = 6.3177 < 8.2130] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L187.CB) [> 4.7470 = 7.9117 < 10.2852] w=0.0056 to align # Constraint # added constraint: constraint((T0284)I185.CB, (T0284)V231.CB) [> 4.2654 = 7.1091 < 9.2418] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)G48.CA) [> 4.3513 = 7.2523 < 9.4279] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)D88.CB) [> 4.1498 = 6.9163 < 8.9911] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)G234.CA) [> 2.1088 = 3.5147 < 4.5691] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)H235.CB) [> 4.7603 = 7.9338 < 10.3139] w=0.0056 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)L47.CB) [> 3.5803 = 5.9672 < 7.7574] w=0.0056 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G48.CA) [> 4.2189 = 7.0315 < 9.1410] w=0.0056 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)S53.CB) [> 4.6033 = 7.6721 < 9.9738] w=0.0056 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)L47.CB) [> 4.4150 = 7.3583 < 9.5658] w=0.0056 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)G234.CA) [> 3.7338 = 6.2230 < 8.0899] w=0.0056 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)I46.CB) [> 4.2143 = 7.0238 < 9.1310] w=0.0056 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)G45.CA) [> 3.6785 = 6.1309 < 7.9701] w=0.0056 to align # Constraint # added constraint: constraint((T0284)T160.CB, (T0284)G184.CA) [> 3.8201 = 6.3669 < 8.2770] w=0.0056 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)C248.CB) [> 4.6277 = 7.7129 < 10.0268] w=0.0056 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)L114.CB) [> 3.3946 = 5.6576 < 7.3548] w=0.0054 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)L114.CB) [> 3.6448 = 6.0746 < 7.8969] w=0.0048 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)A112.CB) [> 2.6952 = 4.4920 < 5.8396] w=0.0048 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)A112.CB) [> 3.4708 = 5.7847 < 7.5201] w=0.0048 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)A113.CB) [> 4.7970 = 7.9949 < 10.3934] w=0.0048 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)A112.CB) [> 3.6125 = 6.0208 < 7.8271] w=0.0048 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)A113.CB) [> 2.3957 = 3.9929 < 5.1908] w=0.0048 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)L114.CB) [> 3.9676 = 6.6126 < 8.5964] w=0.0048 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)T115.CB) [> 3.2148 = 5.3580 < 6.9654] w=0.0048 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)T115.CB) [> 4.1520 = 6.9201 < 8.9961] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)D90.CB) [> 3.7537 = 6.2561 < 8.1330] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)L114.CB) [> 4.7000 = 7.8334 < 10.1834] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)T115.CB) [> 2.6670 = 4.4450 < 5.7786] w=0.0048 to align # Constraint # added constraint: constraint((T0284)S27.CB, (T0284)H91.CB) [> 4.5935 = 7.6559 < 9.9526] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A112.CB, (T0284)G184.CA) [> 4.0014 = 6.6690 < 8.6697] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A113.CB, (T0284)C186.CB) [> 3.7188 = 6.1979 < 8.0573] w=0.0048 to align # Constraint # added constraint: constraint((T0284)P84.CB, (T0284)R229.CB) [> 4.2243 = 7.0406 < 9.1527] w=0.0048 to align # Constraint # added constraint: constraint((T0284)V85.CB, (T0284)N233.CB) [> 4.3004 = 7.1673 < 9.3175] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)V232.CB) [> 4.4729 = 7.4549 < 9.6913] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)N233.CB) [> 3.8410 = 6.4017 < 8.3222] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)H235.CB) [> 4.7867 = 7.9778 < 10.3711] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A89.CB, (T0284)G234.CA) [> 4.7021 = 7.8369 < 10.1880] w=0.0048 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)H235.CB) [> 4.3754 = 7.2924 < 9.4801] w=0.0048 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)N233.CB) [> 3.5598 = 5.9329 < 7.7128] w=0.0048 to align # Constraint # added constraint: constraint((T0284)D88.CB, (T0284)L209.CB) [> 3.6235 = 6.0391 < 7.8509] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)H235.CB) [> 4.2662 = 7.1103 < 9.2435] w=0.0048 to align # Constraint # added constraint: constraint((T0284)A87.CB, (T0284)G234.CA) [> 4.2502 = 7.0836 < 9.2087] w=0.0048 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)C186.CB) [> 2.7115 = 4.5191 < 5.8749] w=0.0012 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)L187.CB) [> 4.4991 = 7.4985 < 9.7481] w=0.0012 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)C186.CB) [> 4.4053 = 7.3422 < 9.5449] w=0.0012 to align # Constraint # added constraint: constraint((T0284)A26.CB, (T0284)L187.CB) [> 3.0792 = 5.1319 < 6.6715] w=0.0012 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)I185.CB) [> 4.2042 = 7.0069 < 9.1090] w=0.0012 to align # Constraint # added constraint: constraint((T0284)T25.CB, (T0284)G184.CA) [> 4.5102 = 7.5170 < 9.7721] w=0.0012 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)L187.CB) [> 4.3785 = 7.2975 < 9.4867] w=0.0012 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)I185.CB) [> 2.9824 = 4.9707 < 6.4619] w=0.0012 to align # Constraint # added constraint: constraint((T0284)H24.CB, (T0284)G184.CA) [> 3.7753 = 6.2922 < 8.1798] w=0.0012 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)G184.CA) [> 2.2866 = 3.8110 < 4.9543] w=0.0012 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)I185.CB) [> 4.6095 = 7.6825 < 9.9872] w=0.0012 to align # Constraint # added constraint: constraint((T0284)C22.CB, (T0284)G184.CA) [> 3.1997 = 5.3328 < 6.9326] w=0.0012 to align # Constraint # added constraint: constraint((T0284)G45.CA, (T0284)A112.CB) [> 4.4117 = 7.3529 < 9.5588] w=0.0012 to align # Constraint # added constraint: constraint((T0284)L47.CB, (T0284)C186.CB) [> 4.3318 = 7.2197 < 9.3856] w=0.0012 to align # Constraint # added constraint: constraint((T0284)Y23.CB, (T0284)T155.CB) [> 4.6664 = 7.7773 < 10.1105] w=0.0006 to align # Constraint # added constraint: constraint((T0284)F29.CB, (T0284)V232.CB) [> 3.5793 = 5.9654 < 7.7550] w=0.0006 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0284/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0284/decoys/ # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/rotate1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate1 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate2 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate3 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate4.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0284)G213.O and (T0284)N214.N only 0.000 apart, marking (T0284)N214.N as missing # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in servers/nFOLD_TS1.pdb.gz # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score -0.2671 model score -0.2647 model score -0.2361 model score -0.2730 model score -0.2824 model score -0.2684 model score -0.2684 model score -0.2682 model score -0.2678 model score -0.1264 model score -0.1348 model score -0.1224 model score -0.1288 model score -0.1176 model score -0.0900 model score -0.0881 model score -0.0885 model score -0.0916 model score -0.0870 model score -0.0898 model score -0.0902 model score -0.0772 model score -0.0852 model score -0.0899 model score -0.3081 model score 1.2781 model score 1.5382 model score 1.4412 model score 1.2110 model score 1.6978 model score 1.6202 model score 1.5735 model score 1.7292 model score 1.6950 model score -0.3062 model score -0.0022 model score 0.0069 model score 0.0102 model score 0.0748 model score -0.0091 model score -0.1823 model score -0.1660 model score -0.0876 model score -0.1419 model score -0.1938 model score -0.2294 model score -0.2595 model score -0.1880 model score -0.2632 model score 0.9614 model score 1.2688 model score 1.2695 model score 1.2692 model score 1.2694 model score 1.2693 model score -0.1312 model score -0.2807 model score -0.2822 model score -0.1464 model score -0.1823 model score -0.1314 model score -0.2807 model score -0.2822 model score -0.1464 model score -0.1823 model score -0.3112 model score -0.3134 model score 0.8196 model score 1.6626 model score 0.9808 model score 1.2685 model score 1.2714 model score 1.2689 model score 1.2828 model score 1.2805 model score 1.2686 model score 1.2715 model score 1.2828 model score 1.2689 model score 1.2756 model score 2.2716 model score -0.1116 model score 0.0036 model score 1.0417 model score 1.7693 model score 0.8394 model score 1.2687 model score 1.2696 model score 1.2725 model score 1.2794 model score 1.2709 model score -0.2801 model score -0.1799 model score -0.1926 model score -0.1783 model score 0.2324 model score -0.2344 model score -0.2559 model score -0.2559 model score -0.2387 model score -0.2390 model score -0.2390 model score -0.1730 model score -0.2598 model score -0.2272 model score -0.1356 model score 0.7114 model score -0.3187 model score -0.1952 model score -0.2797 model score -0.3108 model score -0.2779 model score -0.1963 model score -0.1949 model score -0.1524 model score -0.1523 model score 1.0582 model score -0.1166 model score -0.0312 model score 0.2146 model score 0.3510 model score 0.5056 model score -0.3187 model score -0.2845 model score -0.2835 model score -0.2956 model score -0.1266 model score -0.1642 model score -0.2296 model score -0.3050 model score -0.3063 model score -0.2267 model score -0.2263 model score -0.1311 model score -0.2571 model score -0.2747 model score -0.2512 model score -0.2710 model score -0.2499 model score -0.1843 model score -0.0192 model score -0.1742 model score -0.2245 model score -0.2871 model score -0.2991 model score -0.1572 model score 0.0385 model score -0.1312 model score -0.1979 model score -0.2893 model score -0.3139 model score -0.2856 model score -0.1833 model score 0.8715 model score -0.3058 model score -0.3034 model score -0.2958 model score -0.3058 model score -0.2025 model score -0.1412 model score -0.0610 model score -0.1221 model score 1.3260 model score 1.1209 model score 1.2685 model score 1.2691 model score 1.2744 model score 1.2686 model score 1.2694 model score 1.2687 model score 1.2694 model score 1.2685 model score 1.2688 model score 1.2686 model score -0.3173 model score -0.2527 model score -0.3117 model score 0.3183 model score 0.3220 model score -0.1979 model score -0.1774 model score -0.1635 model score -0.0722 model score -0.1145 model score -0.1992 model score -0.1814 model score -0.0972 model score -0.1672 model score -0.1267 model score -0.2007 model score -0.1822 model score -0.0680 model score -0.1601 model score -0.1206 model score 1.2685 model score 1.2695 model score 1.2687 model score 1.2700 model score 1.2683 model score -0.1814 model score 1.2685 model score 1.2687 model score 1.2700 model score 1.2688 model score -0.3023 model score -0.2697 model score -0.2896 model score -0.3040 model score -0.1929 model score -0.2712 model score -0.2709 model score 1.2689 model score 1.2694 model score 1.2713 model score 1.2730 model score 1.2692 model score -0.2249 model score -0.2249 model score -0.2241 model score -0.2201 model score -0.2704 model score 1.8262 model score 0.8507 model score -0.1654 model score 0.4513 model score 0.7578 model score 0.1763 model score -0.1952 model score -0.1914 model score -0.2748 model score -0.2094 model score -0.2059 model score -0.1869 model score -0.2780 model score -0.0910 model score -0.1403 model score 0.0776 model score 0.4053 model score -0.2538 USE_META, weight: 0.9821 cost: -0.2671 min: -0.3187 max: 2.2716 USE_META, weight: 0.9812 cost: -0.2647 min: -0.3187 max: 2.2716 USE_META, weight: 0.9713 cost: -0.2361 min: -0.3187 max: 2.2716 USE_META, weight: 0.9841 cost: -0.2730 min: -0.3187 max: 2.2716 USE_META, weight: 0.9874 cost: -0.2824 min: -0.3187 max: 2.2716 USE_META, weight: 0.9825 cost: -0.2684 min: -0.3187 max: 2.2716 USE_META, weight: 0.9825 cost: -0.2684 min: -0.3187 max: 2.2716 USE_META, weight: 0.9825 cost: -0.2682 min: -0.3187 max: 2.2716 USE_META, weight: 0.9823 cost: -0.2678 min: -0.3187 max: 2.2716 USE_META, weight: 0.9332 cost: -0.1264 min: -0.3187 max: 2.2716 USE_META, weight: 0.9361 cost: -0.1348 min: -0.3187 max: 2.2716 USE_META, weight: 0.9318 cost: -0.1224 min: -0.3187 max: 2.2716 USE_META, weight: 0.9340 cost: -0.1288 min: -0.3187 max: 2.2716 USE_META, weight: 0.9301 cost: -0.1176 min: -0.3187 max: 2.2716 USE_META, weight: 0.9206 cost: -0.0900 min: -0.3187 max: 2.2716 USE_META, weight: 0.9199 cost: -0.0881 min: -0.3187 max: 2.2716 USE_META, weight: 0.9200 cost: -0.0885 min: -0.3187 max: 2.2716 USE_META, weight: 0.9211 cost: -0.0916 min: -0.3187 max: 2.2716 USE_META, weight: 0.9195 cost: -0.0870 min: -0.3187 max: 2.2716 USE_META, weight: 0.9205 cost: -0.0898 min: -0.3187 max: 2.2716 USE_META, weight: 0.9206 cost: -0.0902 min: -0.3187 max: 2.2716 USE_META, weight: 0.9161 cost: -0.0772 min: -0.3187 max: 2.2716 USE_META, weight: 0.9189 cost: -0.0852 min: -0.3187 max: 2.2716 USE_META, weight: 0.9205 cost: -0.0899 min: -0.3187 max: 2.2716 USE_META, weight: 0.9963 cost: -0.3081 min: -0.3187 max: 2.2716 USE_META, weight: 0.4452 cost: 1.2781 min: -0.3187 max: 2.2716 USE_META, weight: 0.3549 cost: 1.5382 min: -0.3187 max: 2.2716 USE_META, weight: 0.3885 cost: 1.4412 min: -0.3187 max: 2.2716 USE_META, weight: 0.4685 cost: 1.2110 min: -0.3187 max: 2.2716 USE_META, weight: 0.2994 cost: 1.6978 min: -0.3187 max: 2.2716 USE_META, weight: 0.3263 cost: 1.6202 min: -0.3187 max: 2.2716 USE_META, weight: 0.3426 cost: 1.5735 min: -0.3187 max: 2.2716 USE_META, weight: 0.2885 cost: 1.7292 min: -0.3187 max: 2.2716 USE_META, weight: 0.3004 cost: 1.6950 min: -0.3187 max: 2.2716 USE_META, weight: 0.9957 cost: -0.3062 min: -0.3187 max: 2.2716 USE_META, weight: 0.8900 cost: -0.0022 min: -0.3187 max: 2.2716 USE_META, weight: 0.8869 cost: 0.0069 min: -0.3187 max: 2.2716 USE_META, weight: 0.8857 cost: 0.0102 min: -0.3187 max: 2.2716 USE_META, weight: 0.8633 cost: 0.0748 min: -0.3187 max: 2.2716 USE_META, weight: 0.8925 cost: -0.0091 min: -0.3187 max: 2.2716 USE_META, weight: 0.9526 cost: -0.1823 min: -0.3187 max: 2.2716 USE_META, weight: 0.9469 cost: -0.1660 min: -0.3187 max: 2.2716 USE_META, weight: 0.9197 cost: -0.0876 min: -0.3187 max: 2.2716 USE_META, weight: 0.9386 cost: -0.1419 min: -0.3187 max: 2.2716 USE_META, weight: 0.9566 cost: -0.1938 min: -0.3187 max: 2.2716 USE_META, weight: 0.9690 cost: -0.2294 min: -0.3187 max: 2.2716 USE_META, weight: 0.9794 cost: -0.2595 min: -0.3187 max: 2.2716 USE_META, weight: 0.9546 cost: -0.1880 min: -0.3187 max: 2.2716 USE_META, weight: 0.9807 cost: -0.2632 min: -0.3187 max: 2.2716 USE_META, weight: 0.5552 cost: 0.9614 min: -0.3187 max: 2.2716 USE_META, weight: 0.4484 cost: 1.2688 min: 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cost: -0.3134 min: -0.3187 max: 2.2716 USE_META, weight: 0.6045 cost: 0.8196 min: -0.3187 max: 2.2716 USE_META, weight: 0.3116 cost: 1.6626 min: -0.3187 max: 2.2716 USE_META, weight: 0.5485 cost: 0.9808 min: -0.3187 max: 2.2716 USE_META, weight: 0.4486 cost: 1.2685 min: -0.3187 max: 2.2716 USE_META, weight: 0.4475 cost: 1.2714 min: -0.3187 max: 2.2716 USE_META, weight: 0.4484 cost: 1.2689 min: -0.3187 max: 2.2716 USE_META, weight: 0.4436 cost: 1.2828 min: -0.3187 max: 2.2716 USE_META, weight: 0.4444 cost: 1.2805 min: -0.3187 max: 2.2716 USE_META, weight: 0.4485 cost: 1.2686 min: -0.3187 max: 2.2716 USE_META, weight: 0.4475 cost: 1.2715 min: -0.3187 max: 2.2716 USE_META, weight: 0.4436 cost: 1.2828 min: -0.3187 max: 2.2716 USE_META, weight: 0.4484 cost: 1.2689 min: -0.3187 max: 2.2716 USE_META, weight: 0.4461 cost: 1.2756 min: -0.3187 max: 2.2716 USE_META, weight: 0.1000 cost: 2.2716 min: -0.3187 max: 2.2716 USE_META, weight: 0.9281 cost: -0.1116 min: -0.3187 max: 2.2716 USE_META, weight: 0.8880 cost: 0.0036 min: -0.3187 max: 2.2716 USE_META, weight: 0.5273 cost: 1.0417 min: -0.3187 max: 2.2716 USE_META, weight: 0.2745 cost: 1.7693 min: -0.3187 max: 2.2716 USE_META, weight: 0.5976 cost: 0.8394 min: -0.3187 max: 2.2716 USE_META, weight: 0.4485 cost: 1.2687 min: -0.3187 max: 2.2716 USE_META, weight: 0.4482 cost: 1.2696 min: -0.3187 max: 2.2716 USE_META, weight: 0.4472 cost: 1.2725 min: -0.3187 max: 2.2716 USE_META, weight: 0.4448 cost: 1.2794 min: -0.3187 max: 2.2716 USE_META, weight: 0.4477 cost: 1.2709 min: -0.3187 max: 2.2716 USE_META, weight: 0.9866 cost: -0.2801 min: -0.3187 max: 2.2716 USE_META, weight: 0.9518 cost: -0.1799 min: -0.3187 max: 2.2716 USE_META, weight: 0.9562 cost: -0.1926 min: -0.3187 max: 2.2716 USE_META, weight: 0.9512 cost: -0.1783 min: -0.3187 max: 2.2716 USE_META, weight: 0.8085 cost: 0.2324 min: -0.3187 max: 2.2716 USE_META, weight: 0.9707 cost: -0.2344 min: -0.3187 max: 2.2716 USE_META, weight: 0.9782 cost: -0.2559 min: -0.3187 max: 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weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 0.9985 eval: 0.0156 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 0.9985 eval: 0.0156 min: 0.0000 max: 9.2500 USE_EVALUE, weight: 0.9985 eval: 0.0156 min: 0.0000 max: 9.2500 Number of contacts in models: 239 Number of contacts in alignments: 183 NUMB_ALIGNS: 183 Adding 12028 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -515.4087, CN propb: -515.4087 weights: 0.2273 constraints: 1595 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1595 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1595 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 10433 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 10433 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 12028 # command: