# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0283/ # command:# Making conformation for sequence T0283 numbered 1 through 112 Created new target T0283 from T0283.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0283/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0283//projects/compbio/experiments/protein-predict/casp7/T0283/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0283//projects/compbio/experiments/protein-predict/casp7/T0283/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0283/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0283/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)I61.CB) [> 4.0885 = 6.8141 < 8.8583] w=1.0000 to align # Constraint # added constraint: constraint((T0283)A24.CB, (T0283)Y35.CB) [> 4.0370 = 6.7284 < 8.7469] w=0.9348 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)V75.CB) [> 3.3312 = 5.5521 < 7.2177] w=0.8376 to align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)I57.CB) [> 4.1054 = 6.8424 < 8.8951] w=0.8311 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)C87.CB) [> 2.9577 = 4.9296 < 6.4084] w=0.7016 to align # Constraint # added constraint: constraint((T0283)M42.CB, (T0283)T54.CB) [> 3.4635 = 5.7725 < 7.5043] w=0.6896 to align # Constraint # added constraint: constraint((T0283)Y35.CB, (T0283)L90.CB) [> 4.4806 = 7.4677 < 9.7080] w=0.6145 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)M20.CB) [> 3.9458 = 6.5763 < 8.5492] w=0.6012 to align # Constraint # added constraint: constraint((T0283)Q39.CB, (T0283)T49.CB) [> 3.0796 = 5.1327 < 6.6725] w=0.5741 to align # Constraint # added constraint: constraint((T0283)E30.CB, (T0283)G60.CA) [> 4.0279 = 6.7133 < 8.7272] w=0.5734 to align # Constraint # added constraint: constraint((T0283)Y31.CB, (T0283)I61.CB) [> 4.6296 = 7.7160 < 10.0309] w=0.5734 to align # Constraint # added constraint: constraint((T0283)A34.CB, (T0283)L64.CB) [> 4.2646 = 7.1077 < 9.2401] w=0.5512 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)C87.CB) [> 3.7710 = 6.2850 < 8.1705] w=0.5489 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)M91.CB) [> 3.1988 = 5.3314 < 6.9309] w=0.5489 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)T54.CB) [> 4.0527 = 6.7545 < 8.7809] w=0.4677 to align # Constraint # added constraint: constraint((T0283)M42.CB, (T0283)F58.CB) [> 4.2044 = 7.0074 < 9.1096] w=0.4501 to align # Constraint # added constraint: constraint((T0283)K6.CB, (T0283)A19.CB) [> 3.9944 = 6.6574 < 8.6546] w=0.4479 to align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)F58.CB) [> 4.1538 = 6.9230 < 8.9999] w=0.4354 to align # Constraint # added constraint: constraint((T0283)W17.CB, (T0283)F58.CB) [> 3.7750 = 6.2916 < 8.1791] w=0.4336 to align # Constraint # added constraint: constraint((T0283)E66.CB, (T0283)A84.CB) [> 4.5633 = 7.6055 < 9.8872] w=0.4335 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)Q39.CB) [> 3.7502 = 6.2503 < 8.1255] w=0.4314 to align # Constraint # added constraint: constraint((T0283)A24.CB, (T0283)T54.CB) [> 4.2159 = 7.0265 < 9.1345] w=0.4297 to align # Constraint # added constraint: constraint((T0283)Y31.CB, (T0283)G60.CA) [> 3.1657 = 5.2761 < 6.8590] w=0.4294 to align # Constraint # added constraint: constraint((T0283)Y31.CB, (T0283)D63.CB) [> 3.4298 = 5.7163 < 7.4312] w=0.4294 to align # Constraint # added constraint: constraint((T0283)Y31.CB, (T0283)L64.CB) [> 2.4013 = 4.0022 < 5.2029] w=0.4294 to align # Constraint # added constraint: constraint((T0283)A34.CB, (T0283)I61.CB) [> 3.2013 = 5.3356 < 6.9363] w=0.4294 to align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)T54.CB) [> 3.8756 = 6.4594 < 8.3972] w=0.4294 to align # Constraint # added constraint: constraint((T0283)Y41.CB, (T0283)D50.CB) [> 4.3111 = 7.1852 < 9.3407] w=0.4294 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)V83.CB) [> 3.8342 = 6.3904 < 8.3075] w=0.4287 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)T79.CB) [> 3.0944 = 5.1573 < 6.7045] w=0.4223 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)L90.CB) [> 4.1851 = 6.9752 < 9.0678] w=0.4102 to align # Constraint # added constraint: constraint((T0283)A34.CB, (T0283)I57.CB) [> 2.9951 = 4.9919 < 6.4894] w=0.3916 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)A84.CB) [> 4.4364 = 7.3940 < 9.6122] w=0.3734 to align # Constraint # added constraint: constraint((T0283)M20.CB, (T0283)T54.CB) [> 3.5566 = 5.9277 < 7.7060] w=0.3707 to align # Constraint # added constraint: constraint((T0283)M20.CB, (T0283)T49.CB) [> 3.9828 = 6.6380 < 8.6293] w=0.3707 to align # Constraint # added constraint: constraint((T0283)Y35.CB, (T0283)L64.CB) [> 3.0036 = 5.0060 < 6.5078] w=0.3669 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)L90.CB) [> 4.0948 = 6.8247 < 8.8721] w=0.3667 to align # Constraint # added constraint: constraint((T0283)E66.CB, (T0283)D88.CB) [> 4.5365 = 7.5608 < 9.8291] w=0.3641 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)L90.CB) [> 3.7338 = 6.2230 < 8.0899] w=0.3502 to align # Constraint # added constraint: constraint((T0283)L11.CB, (T0283)M20.CB) [> 3.4872 = 5.8120 < 7.5557] w=0.3476 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)A24.CB) [> 3.4343 = 5.7238 < 7.4409] w=0.3476 to align # Constraint # added constraint: constraint((T0283)I4.CB, (T0283)A24.CB) [> 3.2752 = 5.4587 < 7.0963] w=0.3476 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)T54.CB) [> 3.7674 = 6.2789 < 8.1626] w=0.3469 to align # Constraint # added constraint: constraint((T0283)T54.CB, (T0283)L90.CB) [> 3.2109 = 5.3515 < 6.9570] w=0.3292 to align # Constraint # added constraint: constraint((T0283)Y31.CB, (T0283)E89.CB) [> 4.5313 = 7.5521 < 9.8177] w=0.3231 to align # Constraint # added constraint: constraint((T0283)A34.CB, (T0283)F86.CB) [> 3.2857 = 5.4762 < 7.1190] w=0.3231 to align # Constraint # added constraint: constraint((T0283)Y35.CB, (T0283)I57.CB) [> 4.1564 = 6.9273 < 9.0055] w=0.3231 to align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)V83.CB) [> 4.5261 = 7.5435 < 9.8065] w=0.3231 to align # Constraint # added constraint: constraint((T0283)I38.CB, (T0283)C87.CB) [> 4.6056 = 7.6760 < 9.9788] w=0.3231 to align # Constraint # added constraint: constraint((T0283)I57.CB, (T0283)C87.CB) [> 4.0944 = 6.8241 < 8.8713] w=0.3231 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)M91.CB) [> 2.2397 = 3.7328 < 4.8526] w=0.3231 to align # Constraint # added constraint: constraint((T0283)G59.CA, (T0283)M91.CB) [> 4.5116 = 7.5193 < 9.7752] w=0.3231 to align # Constraint # added constraint: constraint((T0283)I61.CB, (T0283)C87.CB) [> 3.7953 = 6.3256 < 8.2232] w=0.3231 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)C87.CB) [> 3.9882 = 6.6470 < 8.6411] w=0.3165 to align # Constraint # added constraint: constraint((T0283)K55.CB, (T0283)L105.CB) [> 3.5506 = 5.9176 < 7.6929] w=0.3078 to align # Constraint # added constraint: constraint((T0283)W43.CB, (T0283)T54.CB) [> 3.6580 = 6.0967 < 7.9257] w=0.3036 to align # Constraint # added constraint: constraint((T0283)M20.CB, (T0283)F58.CB) [> 3.9622 = 6.6037 < 8.5848] w=0.2921 to align # Constraint # added constraint: constraint((T0283)M42.CB, (T0283)W51.CB) [> 4.4886 = 7.4810 < 9.7253] w=0.2914 to align # Constraint # added constraint: constraint((T0283)W51.CB, (T0283)M91.CB) [> 2.2056 = 3.6760 < 4.7788] w=0.2914 to align # Constraint # added constraint: constraint((T0283)T54.CB, (T0283)C87.CB) [> 4.5507 = 7.5846 < 9.8599] w=0.2914 to align # Constraint # added constraint: constraint((T0283)K55.CB, (T0283)C87.CB) [> 2.3967 = 3.9946 < 5.1929] w=0.2914 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)H32.CB) [> 3.0893 = 5.1488 < 6.6935] w=0.2856 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)M42.CB) [> 3.2521 = 5.4202 < 7.0463] w=0.2837 to align # Constraint # added constraint: constraint((T0283)A69.CB, (T0283)G80.CA) [> 3.8462 = 6.4103 < 8.3334] w=0.2812 to align # Constraint # added constraint: constraint((T0283)A69.CB, (T0283)E81.CB) [> 3.8339 = 6.3898 < 8.3068] w=0.2776 to align # Constraint # added constraint: constraint((T0283)G68.CA, (T0283)V83.CB) [> 3.3384 = 5.5641 < 7.2333] w=0.2776 to align # Constraint # added constraint: constraint((T0283)Y41.CB, (T0283)D53.CB) [> 3.6874 = 6.1457 < 7.9894] w=0.2725 to align # Constraint # added constraint: constraint((T0283)W17.CB, (T0283)W43.CB) [> 3.5916 = 5.9860 < 7.7818] w=0.2689 to align # Constraint # added constraint: constraint((T0283)A24.CB, (T0283)K36.CB) [> 3.8449 = 6.4082 < 8.3307] w=0.2689 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)M98.CB) [> 3.3333 = 5.5555 < 7.2221] w=0.2673 to align # Constraint # added constraint: constraint((T0283)Y41.CB, (T0283)F58.CB) [> 4.7010 = 7.8350 < 10.1855] w=0.2476 to align # Constraint # added constraint: constraint((T0283)P28.CB, (T0283)L64.CB) [> 4.5895 = 7.6491 < 9.9439] w=0.2476 to align # Constraint # added constraint: constraint((T0283)L27.CB, (T0283)L64.CB) [> 3.4713 = 5.7856 < 7.5212] w=0.2476 to align # Constraint # added constraint: constraint((T0283)L27.CB, (T0283)K104.CB) [> 4.2815 = 7.1358 < 9.2765] w=0.2325 to align # Constraint # added constraint: constraint((T0283)T54.CB, (T0283)L105.CB) [> 3.6134 = 6.0224 < 7.8291] w=0.2325 to align # Constraint # added constraint: constraint((T0283)L27.CB, (T0283)Y41.CB) [> 3.6456 = 6.0760 < 7.8988] w=0.2263 to align # Constraint # added constraint: constraint((T0283)L11.CB, (T0283)A24.CB) [> 3.9017 = 6.5029 < 8.4537] w=0.2258 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)W51.CB) [> 4.3033 = 7.1722 < 9.3239] w=0.2258 to align # Constraint # added constraint: constraint((T0283)I4.CB, (T0283)P28.CB) [> 2.3406 = 3.9011 < 5.0714] w=0.2258 to align # Constraint # added constraint: constraint((T0283)F3.CB, (T0283)I57.CB) [> 3.9866 = 6.6444 < 8.6377] w=0.2258 to align # Constraint # added constraint: constraint((T0283)F3.CB, (T0283)T54.CB) [> 3.6404 = 6.0673 < 7.8875] w=0.2258 to align # Constraint # added constraint: constraint((T0283)G68.CA, (T0283)C87.CB) [> 4.6168 = 7.6947 < 10.0032] w=0.2258 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)M91.CB) [> 2.8451 = 4.7419 < 6.1644] w=0.2258 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)M98.CB) [> 3.6272 = 6.0453 < 7.8589] w=0.2258 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)Y101.CB) [> 4.0873 = 6.8122 < 8.8559] w=0.2258 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)V83.CB) [> 4.5841 = 7.6402 < 9.9323] w=0.2258 to align # Constraint # added constraint: constraint((T0283)Y41.CB, (T0283)F86.CB) [> 3.6670 = 6.1118 < 7.9453] w=0.2258 to align # Constraint # added constraint: constraint((T0283)A37.CB, (T0283)F86.CB) [> 3.5106 = 5.8509 < 7.6062] w=0.2258 to align # Constraint # added constraint: constraint((T0283)C87.CB, (T0283)W97.CB) [> 3.6689 = 6.1148 < 7.9492] w=0.2217 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)T76.CB) [> 4.3732 = 7.2886 < 9.4752] w=0.2154 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)L78.CB) [> 2.8101 = 4.6835 < 6.0886] w=0.2154 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)T79.CB) [> 4.6832 = 7.8053 < 10.1469] w=0.2154 to align # Constraint # added constraint: constraint((T0283)G46.CA, (T0283)I61.CB) [> 3.6532 = 6.0886 < 7.9152] w=0.2154 to align # Constraint # added constraint: constraint((T0283)E66.CB, (T0283)L105.CB) [> 3.7273 = 6.2121 < 8.0758] w=0.2083 to align # Constraint # added constraint: constraint((T0283)W17.CB, (T0283)W97.CB) [> 4.1783 = 6.9638 < 9.0529] w=0.1943 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)W97.CB) [> 3.7610 = 6.2682 < 8.1487] w=0.1943 to align # Constraint # added constraint: constraint((T0283)F58.CB, (T0283)L105.CB) [> 3.9758 = 6.6263 < 8.6142] w=0.1920 to align # Constraint # added constraint: constraint((T0283)C87.CB, (T0283)Y101.CB) [> 3.0921 = 5.1536 < 6.6996] w=0.1876 to align # Constraint # added constraint: constraint((T0283)I8.CB, (T0283)W51.CB) [> 3.6895 = 6.1491 < 7.9939] w=0.1818 to align # Constraint # added constraint: constraint((T0283)S10.CB, (T0283)M42.CB) [> 3.3020 = 5.5033 < 7.1543] w=0.1818 to align # Constraint # added constraint: constraint((T0283)L11.CB, (T0283)G46.CA) [> 3.0497 = 5.0829 < 6.6077] w=0.1818 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)K40.CB) [> 4.7950 = 7.9917 < 10.3892] w=0.1818 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)W43.CB) [> 3.8459 = 6.4099 < 8.3329] w=0.1818 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)T54.CB) [> 2.9116 = 4.8527 < 6.3086] w=0.1703 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)S45.CB) [> 3.8798 = 6.4664 < 8.4063] w=0.1642 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)P48.CB) [> 4.5843 = 7.6405 < 9.9327] w=0.1642 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)T49.CB) [> 3.3838 = 5.6397 < 7.3316] w=0.1642 to align # Constraint # added constraint: constraint((T0283)I4.CB, (T0283)W43.CB) [> 3.6011 = 6.0018 < 7.8024] w=0.1626 to align # Constraint # added constraint: constraint((T0283)I4.CB, (T0283)T44.CB) [> 4.6414 = 7.7356 < 10.0563] w=0.1626 to align # Constraint # added constraint: constraint((T0283)I4.CB, (T0283)G46.CA) [> 3.8033 = 6.3388 < 8.2405] w=0.1626 to align # Constraint # added constraint: constraint((T0283)E5.CB, (T0283)W43.CB) [> 3.5249 = 5.8748 < 7.6372] w=0.1626 to align # Constraint # added constraint: constraint((T0283)I8.CB, (T0283)W43.CB) [> 2.4931 = 4.1551 < 5.4016] w=0.1626 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)A34.CB) [> 4.5958 = 7.6596 < 9.9575] w=0.1626 to align # Constraint # added constraint: constraint((T0283)L27.CB, (T0283)W97.CB) [> 3.7088 = 6.1814 < 8.0358] w=0.1573 to align # Constraint # added constraint: constraint((T0283)W43.CB, (T0283)M91.CB) [> 3.3878 = 5.6463 < 7.3402] w=0.1554 to align # Constraint # added constraint: constraint((T0283)W51.CB, (T0283)I109.CB) [> 3.4580 = 5.7633 < 7.4923] w=0.1505 to align # Constraint # added constraint: constraint((T0283)R23.CB, (T0283)S108.CB) [> 4.7157 = 7.8595 < 10.2174] w=0.1505 to align # Constraint # added constraint: constraint((T0283)E71.CB, (T0283)G80.CA) [> 3.1916 = 5.3194 < 6.9152] w=0.1505 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)R102.CB) [> 3.8150 = 6.3584 < 8.2659] w=0.1505 to align # Constraint # added constraint: constraint((T0283)G68.CA, (T0283)L78.CB) [> 3.9398 = 6.5663 < 8.5362] w=0.1449 to align # Constraint # added constraint: constraint((T0283)A69.CB, (T0283)T79.CB) [> 3.4962 = 5.8271 < 7.5752] w=0.1428 to align # Constraint # added constraint: constraint((T0283)G68.CA, (T0283)T79.CB) [> 4.0269 = 6.7116 < 8.7250] w=0.1428 to align # Constraint # added constraint: constraint((T0283)F65.CB, (T0283)V83.CB) [> 3.0976 = 5.1627 < 6.7115] w=0.1389 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)V75.CB) [> 3.6706 = 6.1176 < 7.9529] w=0.1361 to align # Constraint # added constraint: constraint((T0283)E66.CB, (T0283)V75.CB) [> 4.6166 = 7.6943 < 10.0025] w=0.1361 to align # Constraint # added constraint: constraint((T0283)M42.CB, (T0283)F65.CB) [> 4.2475 = 7.0791 < 9.2028] w=0.1355 to align # Constraint # added constraint: constraint((T0283)M42.CB, (T0283)V75.CB) [> 4.6473 = 7.7455 < 10.0692] w=0.1355 to align # Constraint # added constraint: constraint((T0283)M7.CB, (T0283)E21.CB) [> 3.8225 = 6.3708 < 8.2820] w=0.1278 to align # Constraint # added constraint: constraint((T0283)R23.CB, (T0283)G47.CA) [> 3.2680 = 5.4468 < 7.0808] w=0.1244 to align # Constraint # added constraint: constraint((T0283)K14.CB, (T0283)E66.CB) [> 3.8330 = 6.3884 < 8.3049] w=0.1244 to align # Constraint # added constraint: constraint((T0283)S10.CB, (T0283)E66.CB) [> 4.3308 = 7.2180 < 9.3834] w=0.1244 to align # Constraint # added constraint: constraint((T0283)K25.CB, (T0283)G46.CA) [> 4.1449 = 6.9082 < 8.9807] w=0.1244 to align # Constraint # added constraint: constraint((T0283)S10.CB, (T0283)T54.CB) [> 4.7837 = 7.9728 < 10.3646] w=0.1218 to align # Constraint # added constraint: constraint((T0283)R23.CB, (T0283)F65.CB) [> 3.3280 = 5.5466 < 7.2106] w=0.1218 to align # Constraint # added constraint: constraint((T0283)A70.CB, (T0283)Y101.CB) [> 2.5632 = 4.2721 < 5.5537] w=0.1212 to align # Constraint # added constraint: constraint((T0283)A70.CB, (T0283)L105.CB) [> 2.6630 = 4.4383 < 5.7698] w=0.1212 to align # Constraint # added constraint: constraint((T0283)G47.CA, (T0283)I61.CB) [> 4.5492 = 7.5820 < 9.8566] w=0.1077 to align # Constraint # added constraint: constraint((T0283)G46.CA, (T0283)L78.CB) [> 4.7776 = 7.9627 < 10.3515] w=0.1074 to align # Constraint # added constraint: constraint((T0283)K6.CB, (T0283)F86.CB) [> 4.7926 = 7.9876 < 10.3839] w=0.1036 to align # Constraint # added constraint: constraint((T0283)T44.CB, (T0283)T54.CB) [> 4.2675 = 7.1125 < 9.2463] w=0.0908 to align # Constraint # added constraint: constraint((T0283)T49.CB, (T0283)A70.CB) [> 4.2442 = 7.0737 < 9.1958] w=0.0871 to align # Constraint # added constraint: constraint((T0283)T49.CB, (T0283)G68.CA) [> 2.1307 = 3.5512 < 4.6166] w=0.0871 to align # Constraint # added constraint: constraint((T0283)P48.CB, (T0283)E66.CB) [> 4.5447 = 7.5745 < 9.8468] w=0.0871 to align # Constraint # added constraint: constraint((T0283)G47.CA, (T0283)E67.CB) [> 3.0333 = 5.0555 < 6.5722] w=0.0871 to align # Constraint # added constraint: constraint((T0283)T44.CB, (T0283)D63.CB) [> 4.7603 = 7.9338 < 10.3139] w=0.0871 to align # Constraint # added constraint: constraint((T0283)A84.CB, (T0283)N106.CB) [> 4.4176 = 7.3627 < 9.5716] w=0.0871 to align # Constraint # added constraint: constraint((T0283)G80.CA, (T0283)I109.CB) [> 3.8588 = 6.4313 < 8.3607] w=0.0871 to align # Constraint # added constraint: constraint((T0283)A69.CB, (T0283)I109.CB) [> 2.6899 = 4.4833 < 5.8282] w=0.0871 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)Y101.CB) [> 3.9868 = 6.6447 < 8.6381] w=0.0871 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)F86.CB) [> 3.0450 = 5.0751 < 6.5976] w=0.0871 to align # Constraint # added constraint: constraint((T0283)R56.CB, (T0283)K100.CB) [> 3.4424 = 5.7373 < 7.4585] w=0.0847 to align # Constraint # added constraint: constraint((T0283)T76.CB, (T0283)A85.CB) [> 2.4191 = 4.0319 < 5.2414] w=0.0836 to align # Constraint # added constraint: constraint((T0283)V75.CB, (T0283)F86.CB) [> 4.2893 = 7.1488 < 9.2935] w=0.0836 to align # Constraint # added constraint: constraint((T0283)T54.CB, (T0283)Y101.CB) [> 3.5570 = 5.9284 < 7.7069] w=0.0753 to align # Constraint # added constraint: constraint((T0283)I61.CB, (T0283)V83.CB) [> 4.1488 = 6.9147 < 8.9891] w=0.0624 to align # Constraint # added constraint: constraint((T0283)F3.CB, (T0283)S108.CB) [> 2.3591 = 3.9319 < 5.1115] w=0.0542 to align # Constraint # added constraint: constraint((T0283)F3.CB, (T0283)I109.CB) [> 3.9333 = 6.5556 < 8.5223] w=0.0542 to align # Constraint # added constraint: constraint((T0283)L78.CB, (T0283)M98.CB) [> 3.3564 = 5.5939 < 7.2721] w=0.0542 to align # Constraint # added constraint: constraint((T0283)T44.CB, (T0283)T79.CB) [> 4.6868 = 7.8113 < 10.1547] w=0.0540 to align # Constraint # added constraint: constraint((T0283)T44.CB, (T0283)L78.CB) [> 2.8328 = 4.7214 < 6.1378] w=0.0540 to align # Constraint # added constraint: constraint((T0283)L62.CB, (T0283)D82.CB) [> 4.4427 = 7.4045 < 9.6258] w=0.0502 to align # Constraint # added constraint: constraint((T0283)C87.CB, (T0283)I109.CB) [> 3.0426 = 5.0709 < 6.5922] w=0.0502 to align # Constraint # added constraint: constraint((T0283)K14.CB, (T0283)S45.CB) [> 4.4927 = 7.4878 < 9.7341] w=0.0435 to align # Constraint # added constraint: constraint((T0283)K74.CB, (T0283)C87.CB) [> 3.2147 = 5.3578 < 6.9652] w=0.0415 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)F58.CB) [> 3.4504 = 5.7506 < 7.4758] w=0.0121 to align # Constraint # added constraint: constraint((T0283)E21.CB, (T0283)L62.CB) [> 3.9382 = 6.5637 < 8.5328] w=0.0061 to align # Constraint # added constraint: constraint((T0283)K14.CB, (T0283)L62.CB) [> 3.1116 = 5.1860 < 6.7419] w=0.0061 to align # Constraint # added constraint: constraint((T0283)K14.CB, (T0283)F58.CB) [> 3.7903 = 6.3172 < 8.2124] w=0.0061 to align # Constraint # added constraint: constraint((T0283)S45.CB, (T0283)D93.CB) [> 4.2715 = 7.1192 < 9.2549] w=0.0061 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0283/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0283/decoys/ # ReadConformPDB reading from PDB file crazyCapHelix75-77tighter.renum.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file crazyCapHelixTake3.renum.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file g80.randomPerturbOfG80coil.renum.gromacs0.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file g80.randomPerturbOfG80coil.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file helix80-93rotateFromTry6.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file helix81-92rotateFromTry6.renum.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file liftTyr31.fromTry9.renum.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file robetta-model10.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file robetta-model6.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model7.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file robetta-model8.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model9.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file rotNtermFromTry26.renum.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file rotNtermLessFromTry26.renum.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 112 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0283 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 254 model score 1.2695 model score 1.2993 model score 1.2096 model score 1.1912 model score 1.2637 model score 1.3669 model score 1.2506 model score 1.1878 model score 1.7189 model score 1.7269 model score 1.1716 model score 1.8346 model score 1.2252 model score 1.7077 model score 1.1637 model score 1.7798 model score 1.2224 model score 1.2824 model score 1.2304 model score 2.2836 model score 1.7914 model score 1.6669 model score 2.2223 model score 2.3782 model score 1.8642 model score 1.7802 model score 1.8197 model score 1.8211 model score 1.8550 model score 1.9311 model score 1.8182 model score 1.8354 model score 1.5723 model score 1.3367 model score 1.7975 model score 1.8517 model score 1.7388 model score 1.9754 model score 1.0008 model score 1.2351 model score 1.3416 model score 1.3069 model score 0.9839 model score 1.5874 model score 1.3483 model score 1.1401 model score 1.2598 model score 1.2497 model score 1.9457 model score 1.1951 model score 1.4659 model score 1.6389 model score 1.8279 model score 2.2836 model score 1.6162 model score 1.6352 model score 2.4018 model score 1.6227 model score 1.5306 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6406 model score 1.6058 model score 1.9124 model score 2.1540 model score 1.5713 model score 1.4659 model score 1.1951 model score 1.6389 model score 2.2836 model score 1.8279 model score 1.3367 model score 1.4978 model score 1.7975 model score 1.8585 model score 1.8490 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8658 model score 1.5599 model score 1.5462 model score 1.2646 model score 1.3045 model score 2.2915 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6058 model score 2.0629 model score 1.9939 model score 1.9807 model score 2.1028 model score 2.0941 model score 2.1699 model score 1.7502 model score 1.7287 model score 1.5270 model score 1.3388 model score 1.4164 model score 1.7043 model score 1.5512 model score 2.0169 model score 1.3277 model score 1.3476 model score 1.3790 model score 2.0613 model score 1.9208 model score 2.0542 model score 1.7248 model score 1.9992 model score 1.1920 model score 1.2161 model score 1.2030 model score 1.5250 model score 1.2675 model score 1.3961 model score 1.3841 model score 1.6861 model score 1.4787 model score 1.2802 model score 1.5436 model score 1.5354 model score 1.5106 model score 1.5230 model score 1.3828 model score 2.1080 model score 2.1221 model score 2.1998 model score 2.1126 model score 2.0174 model score 1.8346 model score 1.7269 model score 2.0460 model score 2.0330 model score 2.0836 model score 1.5672 model score 1.3385 model score 1.3385 model score 1.3385 model score 1.6468 model score 1.4455 model score 1.7269 model score 1.8346 model score 1.8439 model score 1.1338 model score 1.7669 model score 1.8151 model score 2.1251 model score 1.9153 model score 2.0897 model score 2.0724 model score 1.7910 model score 1.4578 model score 1.5868 model score 1.9087 model score 1.5050 model score 1.9160 model score 1.8076 model score 2.4948 model score 1.4382 model score 1.5485 model score 1.1878 model score 1.7269 model score 1.1716 model score 1.8346 model score 1.2252 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3199 model score 1.3128 model score 1.3221 model score 1.1421 model score 1.2918 model score 1.6255 model score 1.9153 model score 1.4194 model score 1.9405 model score 2.0897 model score 1.6255 model score 1.8783 model score 1.4926 model score 1.6834 model score 1.6290 model score 1.6255 model score 1.9421 model score 2.1740 model score 2.1158 model score 1.8541 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9428 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.9365 model score 0.9818 model score 1.4732 model score 1.1954 model score 0.7854 model score 1.7536 model score 1.7118 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0556 model score 1.4510 model score 2.3839 model score 1.5506 model score 1.8370 model score 2.1197 model score 1.5135 model score 1.3301 model score 1.2244 model score 1.9769 model score 1.8309 model score 2.1780 model score 2.1789 model score 2.1416 model score 2.2698 model score 2.0344 model score 1.8633 model score 1.9530 model score 1.6550 model score 1.7647 model score 2.0800 model score 2.0475 model score 1.6836 weight: 0.7451 eval: 1.2695 min: 0.7854 max: 2.4948 weight: 0.7294 eval: 1.2993 min: 0.7854 max: 2.4948 weight: 0.7767 eval: 1.2096 min: 0.7854 max: 2.4948 weight: 0.7863 eval: 1.1912 min: 0.7854 max: 2.4948 weight: 0.7482 eval: 1.2637 min: 0.7854 max: 2.4948 weight: 0.6939 eval: 1.3669 min: 0.7854 max: 2.4948 weight: 0.7551 eval: 1.2506 min: 0.7854 max: 2.4948 weight: 0.7882 eval: 1.1878 min: 0.7854 max: 2.4948 weight: 0.5085 eval: 1.7189 min: 0.7854 max: 2.4948 weight: 0.5043 eval: 1.7269 min: 0.7854 max: 2.4948 weight: 0.7967 eval: 1.1716 min: 0.7854 max: 2.4948 weight: 0.4476 eval: 1.8346 min: 0.7854 max: 2.4948 weight: 0.7685 eval: 1.2252 min: 0.7854 max: 2.4948 weight: 0.5144 eval: 1.7077 min: 0.7854 max: 2.4948 weight: 0.8008 eval: 1.1637 min: 0.7854 max: 2.4948 weight: 0.4765 eval: 1.7798 min: 0.7854 max: 2.4948 weight: 0.7699 eval: 1.2224 min: 0.7854 max: 2.4948 weight: 0.7383 eval: 1.2824 min: 0.7854 max: 2.4948 weight: 0.7657 eval: 1.2304 min: 0.7854 max: 2.4948 weight: 0.2112 eval: 2.2836 min: 0.7854 max: 2.4948 weight: 0.4703 eval: 1.7914 min: 0.7854 max: 2.4948 weight: 0.5359 eval: 1.6669 min: 0.7854 max: 2.4948 weight: 0.2435 eval: 2.2223 min: 0.7854 max: 2.4948 weight: 0.1614 eval: 2.3782 min: 0.7854 max: 2.4948 weight: 0.4320 eval: 1.8642 min: 0.7854 max: 2.4948 weight: 0.4763 eval: 1.7802 min: 0.7854 max: 2.4948 weight: 0.4554 eval: 1.8197 min: 0.7854 max: 2.4948 weight: 0.4547 eval: 1.8211 min: 0.7854 max: 2.4948 weight: 0.4368 eval: 1.8550 min: 0.7854 max: 2.4948 weight: 0.3968 eval: 1.9311 min: 0.7854 max: 2.4948 weight: 0.4562 eval: 1.8182 min: 0.7854 max: 2.4948 weight: 0.4472 eval: 1.8354 min: 0.7854 max: 2.4948 weight: 0.5857 eval: 1.5723 min: 0.7854 max: 2.4948 weight: 0.7097 eval: 1.3367 min: 0.7854 max: 2.4948 weight: 0.4671 eval: 1.7975 min: 0.7854 max: 2.4948 weight: 0.4386 eval: 1.8517 min: 0.7854 max: 2.4948 weight: 0.4980 eval: 1.7388 min: 0.7854 max: 2.4948 weight: 0.3735 eval: 1.9754 min: 0.7854 max: 2.4948 weight: 0.8866 eval: 1.0008 min: 0.7854 max: 2.4948 weight: 0.7632 eval: 1.2351 min: 0.7854 max: 2.4948 weight: 0.7072 eval: 1.3416 min: 0.7854 max: 2.4948 weight: 0.7254 eval: 1.3069 min: 0.7854 max: 2.4948 weight: 0.8955 eval: 0.9839 min: 0.7854 max: 2.4948 weight: 0.5777 eval: 1.5874 min: 0.7854 max: 2.4948 weight: 0.7036 eval: 1.3483 min: 0.7854 max: 2.4948 weight: 0.8132 eval: 1.1401 min: 0.7854 max: 2.4948 weight: 0.7502 eval: 1.2598 min: 0.7854 max: 2.4948 weight: 0.7555 eval: 1.2497 min: 0.7854 max: 2.4948 weight: 0.3891 eval: 1.9457 min: 0.7854 max: 2.4948 weight: 0.7843 eval: 1.1951 min: 0.7854 max: 2.4948 weight: 0.6417 eval: 1.4659 min: 0.7854 max: 2.4948 weight: 0.5506 eval: 1.6389 min: 0.7854 max: 2.4948 weight: 0.4511 eval: 1.8279 min: 0.7854 max: 2.4948 weight: 0.2112 eval: 2.2836 min: 0.7854 max: 2.4948 weight: 0.5626 eval: 1.6162 min: 0.7854 max: 2.4948 weight: 0.5526 eval: 1.6352 min: 0.7854 max: 2.4948 weight: 0.1490 eval: 2.4018 min: 0.7854 max: 2.4948 weight: 0.5592 eval: 1.6227 min: 0.7854 max: 2.4948 weight: 0.6076 eval: 1.5306 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.5497 eval: 1.6406 min: 0.7854 max: 2.4948 weight: 0.5681 eval: 1.6058 min: 0.7854 max: 2.4948 weight: 0.4067 eval: 1.9124 min: 0.7854 max: 2.4948 weight: 0.2794 eval: 2.1540 min: 0.7854 max: 2.4948 weight: 0.5862 eval: 1.5713 min: 0.7854 max: 2.4948 weight: 0.6417 eval: 1.4659 min: 0.7854 max: 2.4948 weight: 0.7843 eval: 1.1951 min: 0.7854 max: 2.4948 weight: 0.5506 eval: 1.6389 min: 0.7854 max: 2.4948 weight: 0.2112 eval: 2.2836 min: 0.7854 max: 2.4948 weight: 0.4511 eval: 1.8279 min: 0.7854 max: 2.4948 weight: 0.7097 eval: 1.3367 min: 0.7854 max: 2.4948 weight: 0.6249 eval: 1.4978 min: 0.7854 max: 2.4948 weight: 0.4671 eval: 1.7975 min: 0.7854 max: 2.4948 weight: 0.4350 eval: 1.8585 min: 0.7854 max: 2.4948 weight: 0.4400 eval: 1.8490 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.4312 eval: 1.8658 min: 0.7854 max: 2.4948 weight: 0.5922 eval: 1.5599 min: 0.7854 max: 2.4948 weight: 0.5994 eval: 1.5462 min: 0.7854 max: 2.4948 weight: 0.7477 eval: 1.2646 min: 0.7854 max: 2.4948 weight: 0.7267 eval: 1.3045 min: 0.7854 max: 2.4948 weight: 0.2070 eval: 2.2915 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.5681 eval: 1.6058 min: 0.7854 max: 2.4948 weight: 0.3274 eval: 2.0629 min: 0.7854 max: 2.4948 weight: 0.3637 eval: 1.9939 min: 0.7854 max: 2.4948 weight: 0.3706 eval: 1.9807 min: 0.7854 max: 2.4948 weight: 0.3064 eval: 2.1028 min: 0.7854 max: 2.4948 weight: 0.3110 eval: 2.0941 min: 0.7854 max: 2.4948 weight: 0.2710 eval: 2.1699 min: 0.7854 max: 2.4948 weight: 0.4920 eval: 1.7502 min: 0.7854 max: 2.4948 weight: 0.5034 eval: 1.7287 min: 0.7854 max: 2.4948 weight: 0.6095 eval: 1.5270 min: 0.7854 max: 2.4948 weight: 0.7087 eval: 1.3388 min: 0.7854 max: 2.4948 weight: 0.6678 eval: 1.4164 min: 0.7854 max: 2.4948 weight: 0.5162 eval: 1.7043 min: 0.7854 max: 2.4948 weight: 0.5968 eval: 1.5512 min: 0.7854 max: 2.4948 weight: 0.3516 eval: 2.0169 min: 0.7854 max: 2.4948 weight: 0.7145 eval: 1.3277 min: 0.7854 max: 2.4948 weight: 0.7040 eval: 1.3476 min: 0.7854 max: 2.4948 weight: 0.6875 eval: 1.3790 min: 0.7854 max: 2.4948 weight: 0.3282 eval: 2.0613 min: 0.7854 max: 2.4948 weight: 0.4022 eval: 1.9208 min: 0.7854 max: 2.4948 weight: 0.3320 eval: 2.0542 min: 0.7854 max: 2.4948 weight: 0.5054 eval: 1.7248 min: 0.7854 max: 2.4948 weight: 0.3609 eval: 1.9992 min: 0.7854 max: 2.4948 weight: 0.7859 eval: 1.1920 min: 0.7854 max: 2.4948 weight: 0.7733 eval: 1.2161 min: 0.7854 max: 2.4948 weight: 0.7801 eval: 1.2030 min: 0.7854 max: 2.4948 weight: 0.6106 eval: 1.5250 min: 0.7854 max: 2.4948 weight: 0.7462 eval: 1.2675 min: 0.7854 max: 2.4948 weight: 0.6785 eval: 1.3961 min: 0.7854 max: 2.4948 weight: 0.6848 eval: 1.3841 min: 0.7854 max: 2.4948 weight: 0.5258 eval: 1.6861 min: 0.7854 max: 2.4948 weight: 0.6350 eval: 1.4787 min: 0.7854 max: 2.4948 weight: 0.7395 eval: 1.2802 min: 0.7854 max: 2.4948 weight: 0.6008 eval: 1.5436 min: 0.7854 max: 2.4948 weight: 0.6051 eval: 1.5354 min: 0.7854 max: 2.4948 weight: 0.6182 eval: 1.5106 min: 0.7854 max: 2.4948 weight: 0.6116 eval: 1.5230 min: 0.7854 max: 2.4948 weight: 0.6855 eval: 1.3828 min: 0.7854 max: 2.4948 weight: 0.3036 eval: 2.1080 min: 0.7854 max: 2.4948 weight: 0.2962 eval: 2.1221 min: 0.7854 max: 2.4948 weight: 0.2553 eval: 2.1998 min: 0.7854 max: 2.4948 weight: 0.3012 eval: 2.1126 min: 0.7854 max: 2.4948 weight: 0.3513 eval: 2.0174 min: 0.7854 max: 2.4948 weight: 0.4476 eval: 1.8346 min: 0.7854 max: 2.4948 weight: 0.5043 eval: 1.7269 min: 0.7854 max: 2.4948 weight: 0.3363 eval: 2.0460 min: 0.7854 max: 2.4948 weight: 0.3431 eval: 2.0330 min: 0.7854 max: 2.4948 weight: 0.3165 eval: 2.0836 min: 0.7854 max: 2.4948 weight: 0.5884 eval: 1.5672 min: 0.7854 max: 2.4948 weight: 0.7088 eval: 1.3385 min: 0.7854 max: 2.4948 weight: 0.7088 eval: 1.3385 min: 0.7854 max: 2.4948 weight: 0.7088 eval: 1.3385 min: 0.7854 max: 2.4948 weight: 0.5465 eval: 1.6468 min: 0.7854 max: 2.4948 weight: 0.6524 eval: 1.4455 min: 0.7854 max: 2.4948 weight: 0.5043 eval: 1.7269 min: 0.7854 max: 2.4948 weight: 0.4476 eval: 1.8346 min: 0.7854 max: 2.4948 weight: 0.4427 eval: 1.8439 min: 0.7854 max: 2.4948 weight: 0.8166 eval: 1.1338 min: 0.7854 max: 2.4948 weight: 0.4832 eval: 1.7669 min: 0.7854 max: 2.4948 weight: 0.4579 eval: 1.8151 min: 0.7854 max: 2.4948 weight: 0.2947 eval: 2.1251 min: 0.7854 max: 2.4948 weight: 0.4051 eval: 1.9153 min: 0.7854 max: 2.4948 weight: 0.3133 eval: 2.0897 min: 0.7854 max: 2.4948 weight: 0.3224 eval: 2.0724 min: 0.7854 max: 2.4948 weight: 0.4705 eval: 1.7910 min: 0.7854 max: 2.4948 weight: 0.6460 eval: 1.4578 min: 0.7854 max: 2.4948 weight: 0.5781 eval: 1.5868 min: 0.7854 max: 2.4948 weight: 0.4086 eval: 1.9087 min: 0.7854 max: 2.4948 weight: 0.6211 eval: 1.5050 min: 0.7854 max: 2.4948 weight: 0.4047 eval: 1.9160 min: 0.7854 max: 2.4948 weight: 0.4618 eval: 1.8076 min: 0.7854 max: 2.4948 weight: 0.1000 eval: 2.4948 min: 0.7854 max: 2.4948 weight: 0.6563 eval: 1.4382 min: 0.7854 max: 2.4948 weight: 0.5982 eval: 1.5485 min: 0.7854 max: 2.4948 weight: 0.7882 eval: 1.1878 min: 0.7854 max: 2.4948 weight: 0.5043 eval: 1.7269 min: 0.7854 max: 2.4948 weight: 0.7967 eval: 1.1716 min: 0.7854 max: 2.4948 weight: 0.4476 eval: 1.8346 min: 0.7854 max: 2.4948 weight: 0.7685 eval: 1.2252 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7186 eval: 1.3199 min: 0.7854 max: 2.4948 weight: 0.7223 eval: 1.3128 min: 0.7854 max: 2.4948 weight: 0.7175 eval: 1.3221 min: 0.7854 max: 2.4948 weight: 0.8122 eval: 1.1421 min: 0.7854 max: 2.4948 weight: 0.7334 eval: 1.2918 min: 0.7854 max: 2.4948 weight: 0.5577 eval: 1.6255 min: 0.7854 max: 2.4948 weight: 0.4051 eval: 1.9153 min: 0.7854 max: 2.4948 weight: 0.6662 eval: 1.4194 min: 0.7854 max: 2.4948 weight: 0.3918 eval: 1.9405 min: 0.7854 max: 2.4948 weight: 0.3133 eval: 2.0897 min: 0.7854 max: 2.4948 weight: 0.5577 eval: 1.6255 min: 0.7854 max: 2.4948 weight: 0.4246 eval: 1.8783 min: 0.7854 max: 2.4948 weight: 0.6277 eval: 1.4926 min: 0.7854 max: 2.4948 weight: 0.5272 eval: 1.6834 min: 0.7854 max: 2.4948 weight: 0.5558 eval: 1.6290 min: 0.7854 max: 2.4948 weight: 0.5577 eval: 1.6255 min: 0.7854 max: 2.4948 weight: 0.3910 eval: 1.9421 min: 0.7854 max: 2.4948 weight: 0.2689 eval: 2.1740 min: 0.7854 max: 2.4948 weight: 0.2995 eval: 2.1158 min: 0.7854 max: 2.4948 weight: 0.4373 eval: 1.8541 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.3906 eval: 1.9428 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.9204 eval: 0.9365 min: 0.7854 max: 2.4948 weight: 0.8966 eval: 0.9818 min: 0.7854 max: 2.4948 weight: 0.6379 eval: 1.4732 min: 0.7854 max: 2.4948 weight: 0.7841 eval: 1.1954 min: 0.7854 max: 2.4948 weight: 1.0000 eval: 0.7854 min: 0.7854 max: 2.4948 weight: 0.4902 eval: 1.7536 min: 0.7854 max: 2.4948 weight: 0.5122 eval: 1.7118 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.7411 eval: 1.2771 min: 0.7854 max: 2.4948 weight: 0.3312 eval: 2.0556 min: 0.7854 max: 2.4948 weight: 0.6496 eval: 1.4510 min: 0.7854 max: 2.4948 weight: 0.1584 eval: 2.3839 min: 0.7854 max: 2.4948 weight: 0.5971 eval: 1.5506 min: 0.7854 max: 2.4948 weight: 0.4463 eval: 1.8370 min: 0.7854 max: 2.4948 weight: 0.2975 eval: 2.1197 min: 0.7854 max: 2.4948 weight: 0.6167 eval: 1.5135 min: 0.7854 max: 2.4948 weight: 0.7132 eval: 1.3301 min: 0.7854 max: 2.4948 weight: 0.7689 eval: 1.2244 min: 0.7854 max: 2.4948 weight: 0.3726 eval: 1.9769 min: 0.7854 max: 2.4948 weight: 0.4496 eval: 1.8309 min: 0.7854 max: 2.4948 weight: 0.2668 eval: 2.1780 min: 0.7854 max: 2.4948 weight: 0.2663 eval: 2.1789 min: 0.7854 max: 2.4948 weight: 0.2860 eval: 2.1416 min: 0.7854 max: 2.4948 weight: 0.2184 eval: 2.2698 min: 0.7854 max: 2.4948 weight: 0.3424 eval: 2.0344 min: 0.7854 max: 2.4948 weight: 0.4325 eval: 1.8633 min: 0.7854 max: 2.4948 weight: 0.3853 eval: 1.9530 min: 0.7854 max: 2.4948 weight: 0.5421 eval: 1.6550 min: 0.7854 max: 2.4948 weight: 0.4844 eval: 1.7647 min: 0.7854 max: 2.4948 weight: 0.3184 eval: 2.0800 min: 0.7854 max: 2.4948 weight: 0.3355 eval: 2.0475 min: 0.7854 max: 2.4948 weight: 0.5271 eval: 1.6836 min: 0.7854 max: 2.4948 Adding 4094 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -178.4231, CN propb: -178.4231 weights: 0.3020 constraints: 178 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 178 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 178 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 3916 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 3916 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4094 # command: