# List of top-scoring protein chains for T0283.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iarB 207 6.15e-02 1iarB b.1.2.1,b.1.2.1 22037,22038 1tffA 234 1.21e-01 d.3.1.11 106854 2a3nA 355 2.76e-01 1iruB 233 9.41e-01 d.153.1.4 71353 1vjnA 220 1.22e+00 d.157.1.4 100825 1wk1A 150 1.66e+00 1ukgA 252 2.13e+00 b.29.1.1 99489 1puiA 210 2.16e+00 c.37.1.8 88292 1x94A 191 2.23e+00 c.80.1.3 109522 1ztuA 341 2.48e+00 1grj 158 2.74e+00 1grj a.2.1.1,d.26.1.2 15691,38433 2essA 248 3.64e+00 1z00B 84 3.74e+00 2a1jA 63 4.64e+00 1wrjA 156 6.25e+00 1ekeA 230 6.39e+00 1ekeA c.55.3.1 33572 1z4eA 153 6.79e+00 1o0sA 605 6.80e+00 c.2.1.7,c.58.1.3 86540,86541 1tjoA 182 7.05e+00 1b8zA 90 7.73e+00 1huuA a.55.1.1 17902 1w1wA 430 9.04e+00 1cm8A 367 9.37e+00 1hcl d.144.1.7 41651 1t3oA 95 1.12e+01 1riyA 90 1.18e+01 1jyhA 157 1.18e+01 d.60.1.3 71956 1vpqA 273 1.24e+01 1colA 204 1.27e+01 1a87 f.1.1.1 43378 1pwuA 776 1.31e+01 d.92.1.14,d.92.1.14,d.166.1.1 95244,95245,95246 1j7nA 776 1.33e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2aazA 317 1.34e+01 1hdkA 141 1.42e+01 b.29.1.3 65807 1lcl 142 1.43e+01 1lcl b.29.1.3 24216 1qouA 181 1.45e+01 1qouA b.17.1.1 23707 2a14A 263 1.71e+01 1f75A 249 1.89e+01 1f75A c.101.1.1 59662 2abl 163 1.93e+01 1bbzA b.34.2.1,d.93.1.1 24481,40525 1qh8B 519 2.19e+01 1qguB c.92.2.3 35634 1gnlA 544 2.43e+01 e.26.1.1 70287 2fdoA 94 2.48e+01 1rhgA 174 2.53e+01 1bgc a.26.1.1 16812 1cd9A 175 2.54e+01 1bgc a.26.1.1 16815 1z81A 229 2.78e+01 2hipA 72 2.78e+01 g.35.1.1 44991 1fhe 217 2.78e+01 1b8xA a.45.1.1,c.47.1.5 17726,33020 1gnc 178 2.82e+01 1bgc a.26.1.1 16821 1pih 73 2.85e+01 g.35.1.1 44994 1or4A 178 2.89e+01 a.1.1.2 93447 2csn 297 2.91e+01 1csn d.144.1.7 41665 1csn 298 2.91e+01 1csn d.144.1.7 41664 1nfdF 222 2.92e+01 1igtB b.1.1.1,b.1.1.2 20187,21203 1wg7A 150 2.93e+01 1l9xA 315 2.96e+01 c.23.16.1 73762 1sheA 103 3.02e+01 d.274.1.1 105551 2anuA 255 3.10e+01 1gm7A 209 3.14e+01 d.153.1.2 65302 1gm9A 209 3.14e+01 d.153.1.2 65304 1k7dA 209 3.15e+01 d.153.1.2 90946 1kecA 209 3.15e+01 d.153.1.2 90957 1h2gB 557 3.22e+01 1bwnA 169 3.43e+01 1btkA b.55.1.1 26961 1scfA 273 3.43e+01 1exzA a.26.1.2 16873 1b55A 169 3.45e+01 1btkA b.55.1.1 26963 2fh5A 185 3.45e+01 1otdA 125 3.46e+01 d.110.3.1 93513 1btkA 169 3.46e+01 1btkA b.55.1.1 26959 1we8A 104 3.55e+01 1q23A 219 3.58e+01 c.43.1.1 104481 1lshA 1056 3.61e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1e6vC 258 3.69e+01 1mroC d.58.31.1 39439 1gk9A 260 3.77e+01 d.153.1.2 65246 1exzA 141 3.78e+01 1exzA a.26.1.2 16877 1nq4A 95 3.81e+01 a.28.1.1 92045 1qo7A 394 3.92e+01 1qo7A c.69.1.11 34697 1mozA 183 3.95e+01 c.37.1.8 79368 1ovwA 398 3.95e+01 1celA b.29.1.10 24300 3ovwA 411 4.13e+01 1celA b.29.1.10 24292 1vgwA 231 4.20e+01 c.68.1.13 100612 2f2fB 283 4.26e+01 1gntA 553 4.36e+01 e.26.1.1 70290 1te4A 131 4.36e+01 a.118.1.16 106794 1ltsA 185 4.36e+01 1lt3A d.166.1.1 42229 1ltaA 188 4.39e+01 1lt3A d.166.1.1 42232 1ltgA 191 4.45e+01 1lt3A d.166.1.1 42235 1ltiA 192 4.45e+01 1lt3A d.166.1.1 42233 1tx4A 198 4.46e+01 1tx4A a.116.1.1 19098 1e1dA 553 4.47e+01 1e1dA e.26.1.1 43363 1grnB 203 4.47e+01 1tx4A a.116.1.1 19106 1am4A 199 4.50e+01 1tx4A a.116.1.1 19100 1ea9C 583 4.50e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1vgzA 241 4.51e+01 c.68.1.13 100624 2bwtA 440 4.56e+01 2fflA 756 4.57e+01 1xfnA 113 4.60e+01 1odvA 100 4.67e+01 d.110.3.1 86887 1h3zA 109 4.98e+01 b.34.9.2 83471 1ixcA 294 5.02e+01 a.4.5.37,c.94.1.1 83764,83765 1pswA 348 5.03e+01 c.87.1.7 88287 1tteA 215 5.16e+01 a.5.2.1,d.20.1.1 107295,107296 1iq8A 582 5.34e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2a6hD 1524 5.40e+01 2bwyA 440 5.43e+01 1xewX 182 5.44e+01 1h71P 463 5.49e+01 b.80.7.1,d.92.1.6 76704,76705 1nnwA 252 5.51e+01 d.159.1.5 80674 1ek6A 348 5.52e+01 1xel c.2.1.2 29800 1g9kA 463 5.55e+01 b.80.7.1,d.92.1.6 76217,76218 2bwwA 440 5.56e+01 1sr4B 261 5.57e+01 d.151.1.1 105949 2cg4A 152 5.60e+01 1lt4A 247 5.60e+01 1lt3A d.166.1.1 42231 2bwuA 440 5.75e+01 1jaw 440 5.76e+01 1az9 c.55.2.1,d.127.1.1 33549,41166 2ngrB 234 5.77e+01 1tx4A a.116.1.1 19105 1wl9A 440 5.77e+01 1lt3A 240 5.95e+01 1lt3A d.166.1.1 42230 5hmgB 175 5.98e+01 1hgeB h.3.1.1 45713 2bwvA 440 6.00e+01 1wl8A 189 6.07e+01 2f94F 350 6.14e+01 1zw5A 355 6.20e+01 1xjjA 644 6.25e+01 1yv5A 374 6.26e+01 2f3nA 76 6.26e+01 1m1nB 522 6.36e+01 c.92.2.3 78418 1wwlA 312 6.40e+01 1g20B 523 6.40e+01 1qguB c.92.2.3 35614 1xcvA 139 6.56e+01 1wkpA 171 6.57e+01 2bwsA 440 6.61e+01 1i3kA 348 6.66e+01 1xel c.2.1.2 61595 1f6wA 533 6.76e+01 2bce c.69.1.1 34629 2aamA 309 6.78e+01 2g9iA 249 6.85e+01 1ow3A 242 6.92e+01 a.116.1.1 87485 1ydhA 216 7.21e+01 1k8kA 418 7.32e+01 c.55.1.1,c.55.1.1 68305,68306 1hzjA 348 7.33e+01 1xel c.2.1.2 61450 1gkfB 557 7.36e+01 2bwxA 441 7.38e+01 1ajqB 557 7.38e+01 1ajqB 1gk9B 557 7.43e+01 1fxhB 557 7.45e+01 1ajqB 1e3aB 560 7.46e+01 1ajqB 1kecB 557 7.50e+01 1eywA 331 7.54e+01 1pscA c.1.9.3 29057 1i0dA 332 7.54e+01 1pscA c.1.9.3 61487 1kplA 473 7.57e+01 f.20.1.1 68782 2citA 282 7.58e+01 1jgmA 336 7.58e+01 1pscA c.1.9.3 62953 1jx9B 557 7.58e+01 1dbhA 354 7.62e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2bvdA 283 7.62e+01 1cp9A 205 7.65e+01 1ajqA d.153.1.2 41849 1qw7A 336 7.65e+01 1eiwA 111 7.66e+01 1eiwA c.23.3.1 31130 2bv9A 290 7.75e+01 1ecfA 504 7.88e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1mkaA 171 8.02e+01 1mkaA d.38.1.2 38543 1iml 76 8.23e+01 1iml g.39.1.3,g.39.1.3 45145,45146 2a0aA 131 8.32e+01 2cf2C 342 8.40e+01 1m7kA 99 8.64e+01 a.7.7.1 74573 2b7oA 464 8.71e+01