sed -e s/TARGET/T0283/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0283/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0288/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0288/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0289/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0289/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0290/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0290/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0291/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0291/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0292/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0292/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0293/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0293/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0295/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0295/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0296/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0296/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0297/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0297/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0298/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0298/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0299/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0299/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0300/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0300/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0301/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0301/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0302/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0302/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0303/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0303/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0304/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0304/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0305/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0305/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0306/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0306/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0307/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0307/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0308/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0308/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0309/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0309/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0311/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0311/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0312/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0312/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0313/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0313/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0314/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0314/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0315/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0315/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0316/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0316/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0317/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0317/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0318/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0318/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0319/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0319/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0321/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0321/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0322/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0322/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0323/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0323/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0324/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0324/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0325/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0325/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0326/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0326/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0327/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0327/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0328/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0328/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0329/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0329/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0330/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0330/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0331/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0331/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0332/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0332/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0335/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0335/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0338/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0338/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0339/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0339/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0340/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0340/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0341/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0341/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0342/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0342/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0345/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0345/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0346/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0346/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0347/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0347/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0348/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0348/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0349/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0349/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0350/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0350/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0351/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0351/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0353/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0353/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0354/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0354/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0356/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0356/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0357/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0357/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0358/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0358/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0359/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0359/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0360/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0360/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0361/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0361/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0362/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0362/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0363/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0363/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0364/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0364/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0365/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0365/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0367/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0367/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0368/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0368/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0369/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0369/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0370/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0370/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0371/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0371/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0372/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0372/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0373/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0373/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0374/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0374/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0375/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0375/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0376/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0376/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0378/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0378/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0379/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0379/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0380/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0380/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0381/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0381/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0382/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0382/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0383/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0383/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0384/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0384/ehl2+sheets.costfcn ;  sed -e s/TARGET/T0385/g < ehl2+sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0385/ehl2+sheets.costfcn ;
date
Fri Sep  7 19:10:32 PDT 2007
para-trickle-make -manyids -se2log -no2letter -modelsdir /projects/compbio/experiments/protein-predict/casp7 \
-makefile ./Makefile -target decoys/predictions.evaluate.ehl2+sheets.rdb \
-wait \
< /projects/compbio/experiments/protein-predict/casp7/target_list.txt
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-karplus-21930-76143479/README for more info.
para-trickle-make: There were 1 jobs that crashed.
para-trickle-make: See /projects/compbio/tmp/para-trickle-make-moai-karplus-21930-76143479/README for more help.
date
Sat Sep  8 03:15:20 PDT 2007
echo ehl2+sheets.evaluate done
ehl2+sheets.evaluate done
date
Sat Sep  8 03:15:20 PDT 2007
make -k   ehl2+sheets-gdt-tau.rdb ehl2+sheets-gdt-tau.avg  ehl2+sheets-gdt-btr.rdb ehl2+sheets-gdt-btr.avg   ehl2+sheets-real_cost-tau.rdb ehl2+sheets-real_cost-tau.avg  ehl2+sheets-real_cost-btr.rdb ehl2+sheets-real_cost-btr.avg
make[1]: Entering directory `/projects/compbio/experiments/protein-predict/CostFcnEval'
time cfneval.pl -s decoys/predictions.evaluate.ehl2+sheets.rdb -f0 > ehl2+sheets-gdt-tau.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.ehl2+sheets.rdb: No such file or directory

real	0m2.999s
user	0m0.892s
sys	0m0.030s
make[1]: *** [ehl2+sheets-gdt-tau.rdb] Error 2
make[1]: Target `ehl2+sheets-gdt-tau.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.ehl2+sheets.rdb -f0 -r btr > ehl2+sheets-gdt-btr.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.ehl2+sheets.rdb: No such file or directory

real	0m0.710s
user	0m0.589s
sys	0m0.051s
make[1]: *** [ehl2+sheets-gdt-btr.rdb] Error 2
make[1]: Target `ehl2+sheets-gdt-btr.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.ehl2+sheets.rdb -f20 -q real_cost > ehl2+sheets-real_cost-tau.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.ehl2+sheets.rdb: No such file or directory

real	0m1.083s
user	0m0.906s
sys	0m0.068s
make[1]: *** [ehl2+sheets-real_cost-tau.rdb] Error 2
make[1]: Target `ehl2+sheets-real_cost-tau.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.ehl2+sheets.rdb -f20 -q real_cost -r btr > ehl2+sheets-real_cost-btr.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.ehl2+sheets.rdb: No such file or directory

real	0m0.684s
user	0m0.580s
sys	0m0.034s
make[1]: *** [ehl2+sheets-real_cost-btr.rdb] Error 2
make[1]: Target `ehl2+sheets-real_cost-btr.avg' not remade because of errors.
make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/CostFcnEval'
make: *** [ehl2+sheets.summarize] Error 2