sed -e s/TARGET/T0283/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0283/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0288/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0288/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0289/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0289/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0290/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0290/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0291/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0291/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0292/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0292/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0293/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0293/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0295/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0295/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0296/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0296/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0297/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0297/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0298/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0298/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0299/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0299/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0300/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0300/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0301/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0301/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0302/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0302/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0303/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0303/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0304/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0304/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0305/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0305/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0306/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0306/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0307/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0307/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0308/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0308/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0309/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0309/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0311/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0311/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0312/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0312/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0313/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0313/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0314/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0314/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0315/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0315/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0316/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0316/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0317/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0317/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0318/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0318/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0319/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0319/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0321/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0321/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0322/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0322/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0323/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0323/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0324/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0324/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0325/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0325/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0326/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0326/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0327/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0327/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0328/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0328/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0329/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0329/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0330/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0330/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0331/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0331/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0332/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0332/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0335/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0335/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0338/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0338/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0339/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0339/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0340/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0340/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0341/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0341/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0342/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0342/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0345/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0345/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0346/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0346/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0347/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0347/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0348/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0348/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0349/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0349/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0350/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0350/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0351/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0351/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0353/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0353/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0354/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0354/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0356/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0356/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0357/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0357/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0358/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0358/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0359/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0359/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0360/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0360/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0361/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0361/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0362/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0362/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0363/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0363/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0364/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0364/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0365/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0365/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0367/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0367/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0368/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0368/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0369/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0369/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0370/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0370/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0371/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0371/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0372/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0372/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0373/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0373/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0374/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0374/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0375/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0375/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0376/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0376/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0378/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0378/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0379/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0379/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0380/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0380/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0381/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0381/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0382/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0382/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0383/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0383/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0384/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0384/dssp-ehl2.costfcn ;  sed -e s/TARGET/T0385/g < dssp-ehl2.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0385/dssp-ehl2.costfcn ;
date
Fri Sep  7 19:10:00 PDT 2007
para-trickle-make -manyids -se2log -no2letter -modelsdir /projects/compbio/experiments/protein-predict/casp7 \
-makefile ./Makefile -target decoys/predictions.evaluate.dssp-ehl2.rdb \
-wait \
< /projects/compbio/experiments/protein-predict/casp7/target_list.txt
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-karplus-21815-26976156/README for more info.
para-trickle-make: There were 1 jobs that crashed.
para-trickle-make: See /projects/compbio/tmp/para-trickle-make-moai-karplus-21815-26976156/README for more help.
date
Sat Sep  8 02:37:42 PDT 2007
echo dssp-ehl2.evaluate done
dssp-ehl2.evaluate done
date
Sat Sep  8 02:37:42 PDT 2007
make -k   dssp-ehl2-gdt-tau.rdb dssp-ehl2-gdt-tau.avg  dssp-ehl2-gdt-btr.rdb dssp-ehl2-gdt-btr.avg   dssp-ehl2-real_cost-tau.rdb dssp-ehl2-real_cost-tau.avg  dssp-ehl2-real_cost-btr.rdb dssp-ehl2-real_cost-btr.avg
make[1]: Entering directory `/projects/compbio/experiments/protein-predict/CostFcnEval'
time cfneval.pl -s decoys/predictions.evaluate.dssp-ehl2.rdb -f0 > dssp-ehl2-gdt-tau.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.dssp-ehl2.rdb: No such file or directory

real	0m2.502s
user	0m0.896s
sys	0m0.027s
make[1]: *** [dssp-ehl2-gdt-tau.rdb] Error 2
make[1]: Target `dssp-ehl2-gdt-tau.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.dssp-ehl2.rdb -f0 -r btr > dssp-ehl2-gdt-btr.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.dssp-ehl2.rdb: No such file or directory

real	0m1.198s
user	0m0.547s
sys	0m0.021s
make[1]: *** [dssp-ehl2-gdt-btr.rdb] Error 2
make[1]: Target `dssp-ehl2-gdt-btr.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.dssp-ehl2.rdb -f20 -q real_cost > dssp-ehl2-real_cost-tau.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.dssp-ehl2.rdb: No such file or directory

real	0m1.710s
user	0m0.905s
sys	0m0.012s
make[1]: *** [dssp-ehl2-real_cost-tau.rdb] Error 2
make[1]: Target `dssp-ehl2-real_cost-tau.avg' not remade because of errors.
time cfneval.pl -s decoys/predictions.evaluate.dssp-ehl2.rdb -f20 -q real_cost -r btr > dssp-ehl2-real_cost-btr.rdb
unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.dssp-ehl2.rdb: No such file or directory

real	0m1.174s
user	0m0.561s
sys	0m0.017s
make[1]: *** [dssp-ehl2-real_cost-btr.rdb] Error 2
make[1]: Target `dssp-ehl2-real_cost-btr.avg' not remade because of errors.
make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/CostFcnEval'
make: *** [dssp-ehl2.summarize] Error 2