sed -e s/TARGET/T0283/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0283/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0288/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0288/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0289/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0289/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0290/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0290/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0291/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0291/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0292/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0292/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0293/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0293/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0295/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0295/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0296/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0296/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0297/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0297/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0298/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0298/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0299/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0299/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0300/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0300/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0301/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0301/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0302/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0302/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0303/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0303/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0304/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0304/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0305/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0305/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0306/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0306/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0307/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0307/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0308/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0308/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0309/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0309/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0311/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0311/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0312/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0312/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0313/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0313/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0314/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0314/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0315/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0315/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0316/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0316/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0317/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0317/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0318/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0318/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0319/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0319/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0321/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0321/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0322/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0322/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0323/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0323/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0324/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0324/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0325/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0325/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0326/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0326/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0327/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0327/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0328/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0328/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0329/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0329/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0330/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0330/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0331/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0331/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0332/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0332/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0335/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0335/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0338/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0338/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0339/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0339/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0340/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0340/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0341/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0341/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0342/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0342/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0345/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0345/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0346/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0346/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0347/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0347/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0348/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0348/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0349/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0349/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0350/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0350/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0351/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0351/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0353/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0353/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0354/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0354/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0356/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0356/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0357/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0357/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0358/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0358/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0359/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0359/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0360/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0360/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0361/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0361/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0362/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0362/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0363/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0363/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0364/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0364/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0365/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0365/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0367/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0367/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0368/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0368/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0369/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0369/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0370/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0370/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0371/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0371/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0372/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0372/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0373/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0373/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0374/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0374/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0375/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0375/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0376/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0376/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0378/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0378/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0379/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0379/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0380/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0380/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0381/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0381/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0382/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0382/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0383/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0383/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0384/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0384/contact647_47_75_01_9.0.costfcn ; sed -e s/TARGET/T0385/g < contact647_47_75_01_9.0.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0385/contact647_47_75_01_9.0.costfcn ; date Sun Dec 9 19:40:16 PST 2007 para-trickle-make -manyids -se2log -no2letter -modelsdir /projects/compbio/experiments/protein-predict/casp7 \ -makefile ./Makefile -target decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb \ -wait -rmvdir \ < /projects/compbio/experiments/protein-predict/casp7/target_list.txt para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-karplus-32528-99203011/README for more info. para-trickle-make: Removed the job directory: /projects/compbio/tmp/para-trickle-make-moai-karplus-32528-99203011 date Sun Dec 9 19:49:00 PST 2007 echo contact647_47_75_01_9.0.evaluate done contact647_47_75_01_9.0.evaluate done date Sun Dec 9 19:49:00 PST 2007 make -k contact647_47_75_01_9.0-gdt-tau_0.rdb contact647_47_75_01_9.0-gdt-tau_0.avg contact647_47_75_01_9.0-gdt-tau_2.rdb contact647_47_75_01_9.0-gdt-tau_2.avg contact647_47_75_01_9.0-gdt-tau_3.rdb contact647_47_75_01_9.0-gdt-tau_3.avg contact647_47_75_01_9.0-gdt-tau_4.rdb contact647_47_75_01_9.0-gdt-tau_4.avg contact647_47_75_01_9.0-gdt-tau_5.rdb contact647_47_75_01_9.0-gdt-tau_5.avg contact647_47_75_01_9.0-gdt-tau_10.rdb contact647_47_75_01_9.0-gdt-tau_10.avg contact647_47_75_01_9.0-gdt-tau_20.rdb contact647_47_75_01_9.0-gdt-tau_20.avg contact647_47_75_01_9.0-gdt-tau_50.rdb contact647_47_75_01_9.0-gdt-tau_50.avg contact647_47_75_01_9.0-real_cost-tau_0.rdb contact647_47_75_01_9.0-real_cost-tau_0.avg contact647_47_75_01_9.0-real_cost-tau_2.rdb contact647_47_75_01_9.0-real_cost-tau_2.avg contact647_47_75_01_9.0-real_cost-tau_3.rdb contact647_47_75_01_9.0-real_cost-tau_3.avg contact647_47_75_01_9.0-real_cost-tau_4.rdb contact647_47_75_01_9.0-real_cost-tau_4.avg contact647_47_75_01_9.0-real_cost-tau_5.rdb contact647_47_75_01_9.0-real_cost-tau_5.avg contact647_47_75_01_9.0-real_cost-tau_10.rdb contact647_47_75_01_9.0-real_cost-tau_10.avg contact647_47_75_01_9.0-real_cost-tau_20.rdb contact647_47_75_01_9.0-real_cost-tau_20.avg contact647_47_75_01_9.0-real_cost-tau_50.rdb contact647_47_75_01_9.0-real_cost-tau_50.avg make[1]: Entering directory `/projects/compbio/experiments/protein-predict/CostFcnEval' time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 0 > contact647_47_75_01_9.0-gdt-tau_0.rdb real 0m7.491s user 0m4.251s sys 0m0.093s summ -m < contact647_47_75_01_9.0-gdt-tau_0.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_0.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 2 > contact647_47_75_01_9.0-gdt-tau_2.rdb real 0m4.296s user 0m4.168s sys 0m0.109s summ -m < contact647_47_75_01_9.0-gdt-tau_2.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_2.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 3 > contact647_47_75_01_9.0-gdt-tau_3.rdb real 0m4.231s user 0m4.172s sys 0m0.056s summ -m < contact647_47_75_01_9.0-gdt-tau_3.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_3.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 4 > contact647_47_75_01_9.0-gdt-tau_4.rdb real 0m4.264s user 0m4.200s sys 0m0.058s summ -m < contact647_47_75_01_9.0-gdt-tau_4.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_4.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 5 > contact647_47_75_01_9.0-gdt-tau_5.rdb real 0m4.282s user 0m4.201s sys 0m0.077s summ -m < contact647_47_75_01_9.0-gdt-tau_5.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_5.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 10 > contact647_47_75_01_9.0-gdt-tau_10.rdb real 0m4.258s user 0m4.171s sys 0m0.085s summ -m < contact647_47_75_01_9.0-gdt-tau_10.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_10.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 20 > contact647_47_75_01_9.0-gdt-tau_20.rdb real 0m4.579s user 0m4.530s sys 0m0.036s summ -m < contact647_47_75_01_9.0-gdt-tau_20.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_20.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 --alpha 50 > contact647_47_75_01_9.0-gdt-tau_50.rdb real 0m4.275s user 0m4.185s sys 0m0.083s summ -m < contact647_47_75_01_9.0-gdt-tau_50.rdb | sort -gr +7 > contact647_47_75_01_9.0-gdt-tau_50.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 0 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_0.rdb real 0m4.492s user 0m4.396s sys 0m0.089s summ -m < contact647_47_75_01_9.0-real_cost-tau_0.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_0.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 2 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_2.rdb real 0m4.462s user 0m4.367s sys 0m0.091s summ -m < contact647_47_75_01_9.0-real_cost-tau_2.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_2.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 3 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_3.rdb real 0m4.433s user 0m4.341s sys 0m0.091s summ -m < contact647_47_75_01_9.0-real_cost-tau_3.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_3.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 4 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_4.rdb real 0m4.771s user 0m4.705s sys 0m0.060s summ -m < contact647_47_75_01_9.0-real_cost-tau_4.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_4.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 5 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_5.rdb real 0m4.731s user 0m4.668s sys 0m0.052s summ -m < contact647_47_75_01_9.0-real_cost-tau_5.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_5.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 10 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_10.rdb real 0m4.677s user 0m4.592s sys 0m0.080s summ -m < contact647_47_75_01_9.0-real_cost-tau_10.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_10.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 20 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_20.rdb real 0m4.439s user 0m4.348s sys 0m0.088s summ -m < contact647_47_75_01_9.0-real_cost-tau_20.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_20.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 --alpha 50 -q real_cost > contact647_47_75_01_9.0-real_cost-tau_50.rdb real 0m4.452s user 0m4.325s sys 0m0.101s summ -m < contact647_47_75_01_9.0-real_cost-tau_50.rdb | sort -gr +7 > contact647_47_75_01_9.0-real_cost-tau_50.avg make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/CostFcnEval' make -k contact647_47_75_01_9.0-gdt-btr.rdb contact647_47_75_01_9.0-gdt-btr.avg contact647_47_75_01_9.0-real_cost-btr.rdb contact647_47_75_01_9.0-real_cost-btr.avg make[1]: Entering directory `/projects/compbio/experiments/protein-predict/CostFcnEval' time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f0 -r btr > contact647_47_75_01_9.0-gdt-btr.rdb real 0m2.544s user 0m2.469s sys 0m0.074s summ -m < contact647_47_75_01_9.0-gdt-btr.rdb \ | sort -g +7 \ > contact647_47_75_01_9.0-gdt-btr.avg time ./cfneval.pl -s decoys/predictions.evaluate.contact647_47_75_01_9.0.rdb -f20 -q real_cost -r btr > contact647_47_75_01_9.0-real_cost-btr.rdb real 0m2.512s user 0m2.436s sys 0m0.073s summ -m < contact647_47_75_01_9.0-real_cost-btr.rdb \ | sort -g +7 \ > contact647_47_75_01_9.0-real_cost-btr.avg make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/CostFcnEval' date Sun Dec 9 19:50:19 PST 2007 echo contact647_47_75_01_9.0.summarize done. contact647_47_75_01_9.0.summarize done. date Sun Dec 9 19:50:19 PST 2007 echo contact647_47_75_01_9.0.all done contact647_47_75_01_9.0.all done