# List of top-scoring protein chains for T0383.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m2eA 135 3.78e+00 c.23.1.5 78478 1r8jA 289 9.00e+00 a.186.1.1,c.23.1.5 104847,104848 1x5kA 124 1.02e+01 1xx7A 184 1.06e+01 1itxA 419 1.28e+01 c.1.8.5,d.26.3.1 71425,71426 1goiA 499 1.40e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1nhkL 144 1.56e+01 1npk d.58.6.1 39142 1h0iA 499 1.62e+01 b.72.2.1,c.1.8.5,d.26.3.1 70838,70839,70840 1e6zA 498 1.63e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59330,59331,59332 1o6iA 499 1.63e+01 b.72.2.1,c.1.8.5,d.26.3.1 86630,86631,86632 1dkfB 235 1.72e+01 2lbd a.123.1.1 19281 1g7dA 106 1.92e+01 1g7dA a.71.1.1 18318 1rf8A 213 1.93e+01 d.86.1.1 97370 1ogbA 499 2.40e+01 b.72.2.1,c.1.8.5,d.26.3.1 92882,92883,92884 1ur9A 499 2.40e+01 b.72.2.1,c.1.8.5,d.26.3.1 99819,99820,99821 1x6mA 196 2.52e+01 2gp5A 349 2.59e+01 1fd0A 235 2.84e+01 a.123.1.1 76164 1fcyA 236 2.84e+01 2lbd a.123.1.1 19282 1exaA 246 2.96e+01 2lbd a.123.1.1 19285 2lbd 267 3.04e+01 2lbd a.123.1.1 19287 1wgeA 83 3.09e+01 1fjjA 159 3.27e+01 1fjjA b.17.1.2 59852 1vi3A 170 3.39e+01 b.17.1.2 100730 1ttuA 477 3.52e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1s1iX 120 3.67e+01 i.1.1.1 105198 1x3bA 146 3.74e+01 1g0u1 266 3.78e+01 1z3zA 431 3.93e+01 2gupA 292 3.95e+01 1e6pA 499 3.95e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1y9wA 140 3.97e+01 1xapA 267 3.98e+01 1nexB 464 4.01e+01 a.158.1.1,b.69.4.1 80443,80444 1ryp2 233 4.03e+01 1ryp2 1m0qA 433 4.03e+01 c.67.1.4 78350 1iruJ 205 4.11e+01 d.153.1.4 71361 2kfnA 605 4.32e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1kfd 605 4.32e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1sseB 86 4.40e+01 1xdkB 303 4.43e+01 1oftA 161 4.51e+01 c.37.1.22 86968 2bl1A 172 4.55e+01 1yvoA 172 4.62e+01 1jj2E 177 4.69e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1vqoE 178 4.80e+01 1klnA 605 5.21e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1fs1A 53 5.37e+01 1fqvA a.158.1.1 19250 1ul4A 94 5.40e+01 g.72.1.1 99538 2dgaA 565 5.63e+01 1dgd 432 5.81e+01 2dkb c.67.1.4 34443 1ofuX 119 5.89e+01 c.37.1.22 86976 1d7uA 433 5.93e+01 2dkb c.67.1.4 34439 1yn9A 169 5.96e+01 2h6nA 312 6.02e+01 1d8yA 605 6.10e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 2gnqA 336 6.18e+01 1ldkE 41 6.25e+01 a.158.1.1 73857 2f4eA 180 6.31e+01 2anpA 291 6.31e+01 1lokA 291 6.35e+01 c.56.5.4 78122 1rtqA 299 6.47e+01 c.56.5.4 97819 1yxlA 119 6.79e+01 1f5yA 85 7.14e+01 1f5yA g.12.1.1,g.12.1.1 44610,44611 1khbA 625 7.37e+01 c.91.1.1,c.109.1.1 68606,68607 2mtaH 373 7.44e+01 2bbkH b.69.2.1 27636 1ddkA 220 7.69e+01 1a7tA d.157.1.1 42056 1q98A 165 7.70e+01 c.47.1.10 96253 1uq5A 263 7.73e+01 d.165.1.1 99778 1ea6A 364 7.73e+01 d.14.1.3,d.122.1.2 64871,64872 1h7sA 365 7.73e+01 d.14.1.3,d.122.1.2 65705,65706 1jjeA 222 7.97e+01 1a7tA d.157.1.1 63117 2a7sA 548 8.00e+01 1a7aA 432 8.30e+01 1b3rA c.2.1.4,c.23.12.3 30104,31364 1li4A 432 8.34e+01 c.2.1.4,c.23.12.3 84616,84617 1ap8 213 8.34e+01 1ap8 d.86.1.1 40151 1jjtA 228 8.39e+01 1a7tA d.157.1.1 63139 1daqA 71 8.72e+01 1daqA a.139.1.1 59113 2bbkH 355 8.79e+01 2bbkH b.69.2.1 27634 1pho 330 8.96e+01 2omf f.4.3.1 43758