# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0362/ # command:# Making conformation for sequence T0362 numbered 1 through 151 Created new target T0362 from T0362.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0362/ # command:# reading script from file T0362.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cyeA/T0362-2cyeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2cyeA expands to /projects/compbio/data/pdb/2cye.pdb.gz 2cyeA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2cyeA/T0362-2cyeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cyeA read from 2cyeA/T0362-2cyeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2cyeA to template set # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR # choosing archetypes in rotamer library T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1821066341.pdb -s /var/tmp/to_scwrl_1821066341.seq -o /var/tmp/from_scwrl_1821066341.pdb > /var/tmp/scwrl_1821066341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1821066341.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s5uA/T0362-1s5uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1s5uA/T0362-1s5uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1s5uA read from 1s5uA/T0362-1s5uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=7 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_537322532.pdb -s /var/tmp/to_scwrl_537322532.seq -o /var/tmp/from_scwrl_537322532.pdb > /var/tmp/scwrl_537322532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_537322532.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z54A/T0362-1z54A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1z54A expands to /projects/compbio/data/pdb/1z54.pdb.gz 1z54A:# T0362 read from 1z54A/T0362-1z54A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1z54A read from 1z54A/T0362-1z54A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1z54A to template set # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=10 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_550245196.pdb -s /var/tmp/to_scwrl_550245196.seq -o /var/tmp/from_scwrl_550245196.pdb > /var/tmp/scwrl_550245196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550245196.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2av9A/T0362-2av9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2av9A expands to /projects/compbio/data/pdb/2av9.pdb.gz 2av9A:Skipped atom 226, because occupancy 0.5 <= existing 0.500 in 2av9A Skipped atom 230, because occupancy 0.500 <= existing 0.500 in 2av9A Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 2av9A Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 2av9A Skipped atom 236, because occupancy 0.500 <= existing 0.500 in 2av9A Skipped atom 238, because occupancy 0.500 <= existing 0.500 in 2av9A Skipped atom 240, because occupancy 0.500 <= existing 0.500 in 2av9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2av9A/T0362-2av9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2av9A read from 2av9A/T0362-2av9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2av9A to template set # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNP 2av9A 52 :GGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=15 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_157272379.pdb -s /var/tmp/to_scwrl_157272379.seq -o /var/tmp/from_scwrl_157272379.pdb > /var/tmp/scwrl_157272379.log sh: line 1: 16024 Killed scwrl3 -i /var/tmp/to_scwrl_157272379.pdb -s /var/tmp/to_scwrl_157272379.seq -o /var/tmp/from_scwrl_157272379.pdb >/var/tmp/scwrl_157272379.log Error: Couldn't open file /var/tmp/from_scwrl_157272379.pdb or /var/tmp/from_scwrl_157272379.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_157272379_b.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_157272379_b.pdb.gz for input Trying /var/tmp/from_scwrl_157272379_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_157272379_b.pdb or /var/tmp/from_scwrl_157272379_b.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_157272379_a.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_157272379_a.pdb.gz for input Trying /var/tmp/from_scwrl_157272379_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_157272379_a.pdb or /var/tmp/from_scwrl_157272379_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_157272379.pdb or /var/tmp/from_scwrl_157272379_b.pdb or /var/tmp/from_scwrl_157272379_a.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aliA/T0362-2aliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2aliA expands to /projects/compbio/data/pdb/2ali.pdb.gz 2aliA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 165, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 167, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 169, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 718, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 722, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 724, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 726, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2aliA Skipped atom 745, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 749, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 751, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 753, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 755, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 757, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 759, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 860, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 864, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 866, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 886, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 890, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 892, because occupancy 0.400 <= existing 0.600 in 2aliA Skipped atom 894, because occupancy 0.400 <= existing 0.600 in 2aliA # T0362 read from 2aliA/T0362-2aliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2aliA read from 2aliA/T0362-2aliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2aliA to template set # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=18 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1104627320.pdb -s /var/tmp/to_scwrl_1104627320.seq -o /var/tmp/from_scwrl_1104627320.pdb > /var/tmp/scwrl_1104627320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104627320.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf6A/T0362-2gf6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2gf6A expands to /projects/compbio/data/pdb/2gf6.pdb.gz 2gf6A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2gf6A/T0362-2gf6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gf6A read from 2gf6A/T0362-2gf6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2gf6A to template set # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=23 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1910858269.pdb -s /var/tmp/to_scwrl_1910858269.seq -o /var/tmp/from_scwrl_1910858269.pdb > /var/tmp/scwrl_1910858269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1910858269.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yliA/T0362-1yliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1yliA expands to /projects/compbio/data/pdb/1yli.pdb.gz 1yliA:Skipped atom 122, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 588, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 590, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 592, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 594, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 596, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 1yliA Skipped atom 600, because occupancy 0.500 <= existing 0.500 in 1yliA # T0362 read from 1yliA/T0362-1yliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yliA read from 1yliA/T0362-1yliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1yliA to template set # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 8 :LL 1yliA 18 :LL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHCQ 1yliA 55 :AHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=31 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1312994983.pdb -s /var/tmp/to_scwrl_1312994983.seq -o /var/tmp/from_scwrl_1312994983.pdb > /var/tmp/scwrl_1312994983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312994983.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpmA/T0362-1vpmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1vpmA/T0362-1vpmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vpmA read from 1vpmA/T0362-1vpmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=39 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1140384171.pdb -s /var/tmp/to_scwrl_1140384171.seq -o /var/tmp/from_scwrl_1140384171.pdb > /var/tmp/scwrl_1140384171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140384171.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2essA/T0362-2essA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2essA expands to /projects/compbio/data/pdb/2ess.pdb.gz 2essA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 7, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 9, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 335, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 337, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 472, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 476, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 478, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 480, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1165, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1169, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1179, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1218, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1222, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1224, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1226, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1228, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1255, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1259, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1261, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1263, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1357, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1361, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1363, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1365, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1367, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1369, because occupancy 0.500 <= existing 0.500 in 2essA Skipped atom 1371, because occupancy 0.500 <= existing 0.500 in 2essA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2essA/T0362-2essA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2essA read from 2essA/T0362-2essA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2essA to template set # found chain 2essA in template set Warning: unaligning (T0362)T126 because of BadResidue code BAD_PEPTIDE in next template residue (2essA)R121 Warning: unaligning (T0362)R127 because of BadResidue code BAD_PEPTIDE at template residue (2essA)R121 Warning: unaligning (T0362)R129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2essA)A124 Warning: unaligning (T0362)C130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2essA)A124 T0362 1 :MNPEN 2essA 1 :MSEEN T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2essA 7 :IGTYQFVAEPFHVDFNGRLTMGVLGNHLLNCAGFHASDRGFGIATL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2essA 53 :NEDNYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVID T0362 108 :EEQIAAHALIRHLAINAQ 2essA 102 :DGKKIGYARSVWAMINLN T0362 128 :H 2essA 122 :K Number of specific fragments extracted= 5 number of extra gaps= 2 total=44 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1763794426.pdb -s /var/tmp/to_scwrl_1763794426.seq -o /var/tmp/from_scwrl_1763794426.pdb > /var/tmp/scwrl_1763794426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763794426.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gvhA/T0362-2gvhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2gvhA expands to /projects/compbio/data/pdb/2gvh.pdb.gz 2gvhA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2gvhA/T0362-2gvhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gvhA read from 2gvhA/T0362-2gvhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2gvhA to template set # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAAS T0362 60 :VTPEVALPIIHCQ 2gvhA 184 :RYCGKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=50 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_2059344233.pdb -s /var/tmp/to_scwrl_2059344233.seq -o /var/tmp/from_scwrl_2059344233.pdb > /var/tmp/scwrl_2059344233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059344233.pdb Number of alignments=10 # command:# reading script from file T0362.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cyeA read from 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=54 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1582152039.pdb -s /var/tmp/to_scwrl_1582152039.seq -o /var/tmp/from_scwrl_1582152039.pdb > /var/tmp/scwrl_1582152039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582152039.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1s5uA read from 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=57 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_738647283.pdb -s /var/tmp/to_scwrl_738647283.seq -o /var/tmp/from_scwrl_738647283.pdb > /var/tmp/scwrl_738647283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738647283.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1z54A read from 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=60 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_772970072.pdb -s /var/tmp/to_scwrl_772970072.seq -o /var/tmp/from_scwrl_772970072.pdb > /var/tmp/scwrl_772970072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772970072.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2aliA read from 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2aliA in template set Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=64 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_94307398.pdb -s /var/tmp/to_scwrl_94307398.seq -o /var/tmp/from_scwrl_94307398.pdb > /var/tmp/scwrl_94307398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94307398.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gf6A read from 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=68 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_51245830.pdb -s /var/tmp/to_scwrl_51245830.seq -o /var/tmp/from_scwrl_51245830.pdb > /var/tmp/scwrl_51245830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_51245830.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yliA read from 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 8 :LL 1yliA 18 :LL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=76 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_10901063.pdb -s /var/tmp/to_scwrl_10901063.seq -o /var/tmp/from_scwrl_10901063.pdb > /var/tmp/scwrl_10901063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_10901063.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vpmA read from 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=84 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1046370347.pdb -s /var/tmp/to_scwrl_1046370347.seq -o /var/tmp/from_scwrl_1046370347.pdb > /var/tmp/scwrl_1046370347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1046370347.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2essA read from 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2essA in template set Warning: unaligning (T0362)T126 because of BadResidue code BAD_PEPTIDE in next template residue (2essA)R121 Warning: unaligning (T0362)R127 because of BadResidue code BAD_PEPTIDE at template residue (2essA)R121 Warning: unaligning (T0362)R129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2essA)A124 Warning: unaligning (T0362)C130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2essA)A124 T0362 1 :MNPEN 2essA 1 :MSEEN T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2essA 7 :IGTYQFVAEPFHVDFNGRLTMGVLGNHLLNCAGFHASDRGFGIATLNED T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2essA 56 :NYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVID T0362 108 :EEQIAAHALIRHLAINAQ 2essA 102 :DGKKIGYARSVWAMINLN T0362 128 :H 2essA 122 :K Number of specific fragments extracted= 5 number of extra gaps= 2 total=89 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_628966950.pdb -s /var/tmp/to_scwrl_628966950.seq -o /var/tmp/from_scwrl_628966950.pdb > /var/tmp/scwrl_628966950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628966950.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gvhA read from 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYC T0362 63 :EVALPIIHCQ 2gvhA 187 :GKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=95 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1520982029.pdb -s /var/tmp/to_scwrl_1520982029.seq -o /var/tmp/from_scwrl_1520982029.pdb > /var/tmp/scwrl_1520982029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520982029.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h4uA/T0362-2h4uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2h4uA expands to /projects/compbio/data/pdb/2h4u.pdb.gz 2h4uA:# T0362 read from 2h4uA/T0362-2h4uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h4uA read from 2h4uA/T0362-2h4uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2h4uA to template set # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHL 2h4uA 125 :TGKLIAQGRHTKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=98 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1761250572.pdb -s /var/tmp/to_scwrl_1761250572.seq -o /var/tmp/from_scwrl_1761250572.pdb > /var/tmp/scwrl_1761250572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1761250572.pdb Number of alignments=20 # command:# reading script from file T0362.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z54A/T0362-1z54A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1z54A/T0362-1z54A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1z54A read from 1z54A/T0362-1z54A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASG 1z54A 112 :GERAARIPEDIYRALSVLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=101 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1089653713.pdb -s /var/tmp/to_scwrl_1089653713.seq -o /var/tmp/from_scwrl_1089653713.pdb > /var/tmp/scwrl_1089653713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1089653713.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s5uA/T0362-1s5uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1s5uA/T0362-1s5uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1s5uA read from 1s5uA/T0362-1s5uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=104 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1003886059.pdb -s /var/tmp/to_scwrl_1003886059.seq -o /var/tmp/from_scwrl_1003886059.pdb > /var/tmp/scwrl_1003886059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003886059.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cyeA/T0362-2cyeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2cyeA/T0362-2cyeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cyeA read from 2cyeA/T0362-2cyeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADIFP 2cyeA 47 :WLEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=108 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_168057522.pdb -s /var/tmp/to_scwrl_168057522.seq -o /var/tmp/from_scwrl_168057522.pdb > /var/tmp/scwrl_168057522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168057522.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf6A/T0362-2gf6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2gf6A/T0362-2gf6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gf6A read from 2gf6A/T0362-2gf6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 51 :I 2gf6A 50 :I T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=113 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_410134047.pdb -s /var/tmp/to_scwrl_410134047.seq -o /var/tmp/from_scwrl_410134047.pdb > /var/tmp/scwrl_410134047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410134047.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2av9A/T0362-2av9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2av9A/T0362-2av9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2av9A read from 2av9A/T0362-2av9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 12 :YLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=118 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1038626924.pdb -s /var/tmp/to_scwrl_1038626924.seq -o /var/tmp/from_scwrl_1038626924.pdb > /var/tmp/scwrl_1038626924.log sh: line 1: 16120 Killed scwrl3 -i /var/tmp/to_scwrl_1038626924.pdb -s /var/tmp/to_scwrl_1038626924.seq -o /var/tmp/from_scwrl_1038626924.pdb >/var/tmp/scwrl_1038626924.log Error: Couldn't open file /var/tmp/from_scwrl_1038626924.pdb or /var/tmp/from_scwrl_1038626924.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1038626924_b.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1038626924_b.pdb.gz for input Trying /var/tmp/from_scwrl_1038626924_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1038626924_b.pdb or /var/tmp/from_scwrl_1038626924_b.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1038626924_a.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1038626924_a.pdb.gz for input Trying /var/tmp/from_scwrl_1038626924_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1038626924_a.pdb or /var/tmp/from_scwrl_1038626924_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1038626924.pdb or /var/tmp/from_scwrl_1038626924_b.pdb or /var/tmp/from_scwrl_1038626924_a.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aliA/T0362-2aliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2aliA/T0362-2aliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2aliA read from 2aliA/T0362-2aliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=121 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1982945081.pdb -s /var/tmp/to_scwrl_1982945081.seq -o /var/tmp/from_scwrl_1982945081.pdb > /var/tmp/scwrl_1982945081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1982945081.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yliA/T0362-1yliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1yliA/T0362-1yliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yliA read from 1yliA/T0362-1yliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 9 :L 1yliA 19 :L T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 6 number of extra gaps= 1 total=127 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_93189435.pdb -s /var/tmp/to_scwrl_93189435.seq -o /var/tmp/from_scwrl_93189435.pdb > /var/tmp/scwrl_93189435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93189435.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpmA/T0362-1vpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1vpmA/T0362-1vpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vpmA read from 1vpmA/T0362-1vpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 7 number of extra gaps= 1 total=134 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_181271232.pdb -s /var/tmp/to_scwrl_181271232.seq -o /var/tmp/from_scwrl_181271232.pdb > /var/tmp/scwrl_181271232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181271232.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2essA/T0362-2essA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2essA/T0362-2essA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2essA read from 2essA/T0362-2essA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2essA in template set Warning: unaligning (T0362)T126 because of BadResidue code BAD_PEPTIDE in next template residue (2essA)R121 Warning: unaligning (T0362)R127 because of BadResidue code BAD_PEPTIDE at template residue (2essA)R121 Warning: unaligning (T0362)R129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2essA)A124 Warning: unaligning (T0362)C130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2essA)A124 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2essA 4 :ENKIGTYQFVAEPFHVDFNGRLTMGVLGNHLLNCAGFHASDRGFGIATL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2essA 53 :NEDNYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVID T0362 108 :EEQIAAHALIRHLAINAQ 2essA 102 :DGKKIGYARSVWAMINLN T0362 128 :H 2essA 122 :K Number of specific fragments extracted= 4 number of extra gaps= 2 total=138 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_525829204.pdb -s /var/tmp/to_scwrl_525829204.seq -o /var/tmp/from_scwrl_525829204.pdb > /var/tmp/scwrl_525829204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525829204.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h4uA/T0362-2h4uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2h4uA/T0362-2h4uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h4uA read from 2h4uA/T0362-2h4uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHL 2h4uA 125 :TGKLIAQGRHTKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=141 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1527622953.pdb -s /var/tmp/to_scwrl_1527622953.seq -o /var/tmp/from_scwrl_1527622953.pdb > /var/tmp/scwrl_1527622953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527622953.pdb Number of alignments=30 # command:# reading script from file T0362.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1s5uA read from 1s5uA/T0362-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=144 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1312630442.pdb -s /var/tmp/to_scwrl_1312630442.seq -o /var/tmp/from_scwrl_1312630442.pdb > /var/tmp/scwrl_1312630442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312630442.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2cyeA read from 2cyeA/T0362-2cyeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=148 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_199411898.pdb -s /var/tmp/to_scwrl_199411898.seq -o /var/tmp/from_scwrl_199411898.pdb > /var/tmp/scwrl_199411898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_199411898.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1z54A read from 1z54A/T0362-1z54A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=151 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_2064945485.pdb -s /var/tmp/to_scwrl_2064945485.seq -o /var/tmp/from_scwrl_2064945485.pdb > /var/tmp/scwrl_2064945485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064945485.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gf6A read from 2gf6A/T0362-2gf6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=155 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1862875639.pdb -s /var/tmp/to_scwrl_1862875639.seq -o /var/tmp/from_scwrl_1862875639.pdb > /var/tmp/scwrl_1862875639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862875639.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2aliA read from 2aliA/T0362-2aliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2aliA in template set Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=159 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_356684278.pdb -s /var/tmp/to_scwrl_356684278.seq -o /var/tmp/from_scwrl_356684278.pdb > /var/tmp/scwrl_356684278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_356684278.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yliA read from 1yliA/T0362-1yliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 8 :LL 1yliA 18 :LL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=167 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1022089159.pdb -s /var/tmp/to_scwrl_1022089159.seq -o /var/tmp/from_scwrl_1022089159.pdb > /var/tmp/scwrl_1022089159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022089159.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vpmA read from 1vpmA/T0362-1vpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=175 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1626250261.pdb -s /var/tmp/to_scwrl_1626250261.seq -o /var/tmp/from_scwrl_1626250261.pdb > /var/tmp/scwrl_1626250261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626250261.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2av9A/T0362-2av9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2av9A/T0362-2av9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2av9A read from 2av9A/T0362-2av9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNPADI 2av9A 52 :GGLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=180 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1669679261.pdb -s /var/tmp/to_scwrl_1669679261.seq -o /var/tmp/from_scwrl_1669679261.pdb > /var/tmp/scwrl_1669679261.log sh: line 1: 16445 Killed scwrl3 -i /var/tmp/to_scwrl_1669679261.pdb -s /var/tmp/to_scwrl_1669679261.seq -o /var/tmp/from_scwrl_1669679261.pdb >/var/tmp/scwrl_1669679261.log Error: Couldn't open file /var/tmp/from_scwrl_1669679261.pdb or /var/tmp/from_scwrl_1669679261.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1669679261_b.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1669679261_b.pdb.gz for input Trying /var/tmp/from_scwrl_1669679261_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1669679261_b.pdb or /var/tmp/from_scwrl_1669679261_b.pdb.gz for input Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1669679261_a.pdb or /projects/compbio/experiments/protein-predict/casp7/T0362//var/tmp/from_scwrl_1669679261_a.pdb.gz for input Trying /var/tmp/from_scwrl_1669679261_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1669679261_a.pdb or /var/tmp/from_scwrl_1669679261_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1669679261.pdb or /var/tmp/from_scwrl_1669679261_b.pdb or /var/tmp/from_scwrl_1669679261_a.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2essA read from 2essA/T0362-2essA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2essA in template set Warning: unaligning (T0362)T126 because of BadResidue code BAD_PEPTIDE in next template residue (2essA)R121 Warning: unaligning (T0362)R127 because of BadResidue code BAD_PEPTIDE at template residue (2essA)R121 Warning: unaligning (T0362)R129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2essA)A124 Warning: unaligning (T0362)C130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2essA)A124 T0362 1 :MNPEN 2essA 1 :MSEEN T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2essA 7 :IGTYQFVAEPFHVDFNGRLTMGVLGNHLLNCAGFHASDRGFGIATLNED T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2essA 56 :NYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVID T0362 108 :EEQIAAHALIRHLAINAQ 2essA 102 :DGKKIGYARSVWAMINLN T0362 128 :H 2essA 122 :K Number of specific fragments extracted= 5 number of extra gaps= 2 total=185 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_14989683.pdb -s /var/tmp/to_scwrl_14989683.seq -o /var/tmp/from_scwrl_14989683.pdb > /var/tmp/scwrl_14989683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14989683.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0362 read from 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2gvhA read from 2gvhA/T0362-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYC T0362 63 :EVALPIIHCQ 2gvhA 187 :GKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=191 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 136 ; scwrl3 -i /var/tmp/to_scwrl_1242561040.pdb -s /var/tmp/to_scwrl_1242561040.seq -o /var/tmp/from_scwrl_1242561040.pdb > /var/tmp/scwrl_1242561040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242561040.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//projects/compbio/experiments/protein-predict/casp7/constraints/T0362/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0362//projects/compbio/experiments/protein-predict/casp7/constraints/T0362/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0362/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0362/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bvqA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bvqA expands to /projects/compbio/data/pdb/1bvq.pdb.gz 1bvqA:# T0362 read from 1bvqA/merged-a2m # 1bvqA read from 1bvqA/merged-a2m # adding 1bvqA to template set # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 53 :PGSRKSEVTPE 1bvqA 45 :PPWRQTVVERG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLN 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWR T0362 97 :NSFQVHFEFRCE 1bvqA 90 :KSFVQRHSVSRT T0362 109 :EQIAAHALIRHLAINAQT 1bvqA 108 :QLVMRADEIRVFAMNDGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=196 Number of alignments=41 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1bvqA 5 :ITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 53 :PGSRKSEVTPE 1bvqA 45 :PPWRQTVVERG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPN 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=199 Number of alignments=42 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1bvqA 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 6 number of extra gaps= 2 total=205 Number of alignments=43 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1bvqA 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 6 number of extra gaps= 2 total=211 Number of alignments=44 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1bvqA 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 6 number of extra gaps= 2 total=217 Number of alignments=45 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1bvqA 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 6 number of extra gaps= 2 total=223 Number of alignments=46 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 48 :RQTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 2 total=228 Number of alignments=47 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 48 :RQTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 2 total=233 Number of alignments=48 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 11 :IEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 48 :RQTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :I 1bvqA 136 :Y Number of specific fragments extracted= 5 number of extra gaps= 2 total=238 Number of alignments=49 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 6 :TMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 48 :RQTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :I 1bvqA 136 :Y Number of specific fragments extracted= 5 number of extra gaps= 2 total=243 Number of alignments=50 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKS 1bvqA 11 :IEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1bvqA 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 2 number of extra gaps= 0 total=245 Number of alignments=51 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPAD 1bvqA 7 :MQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWR T0362 57 :KSEVT 1bvqA 49 :QTVVE T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1bvqA 55 :GIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 3 number of extra gaps= 0 total=248 Number of alignments=52 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1bvqA 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=255 Number of alignments=53 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1bvqA 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=262 Number of alignments=54 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIF 1bvqA 49 :QTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=270 Number of alignments=55 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIF 1bvqA 47 :WRQTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=278 Number of alignments=56 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1bvqA 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1bvqA 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=285 Number of alignments=57 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1bvqA 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1bvqA 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=292 Number of alignments=58 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIF 1bvqA 49 :QTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=300 Number of alignments=59 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIF 1bvqA 47 :WRQTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=308 Number of alignments=60 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1bvqA 48 :RQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=316 Number of alignments=61 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1bvqA 50 :TVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=324 Number of alignments=62 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1bvqA 48 :RQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=332 Number of alignments=63 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 3 :P 1bvqA 3 :R T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1bvqA 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFPGS 1bvqA 46 :PWRQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 9 number of extra gaps= 1 total=341 Number of alignments=64 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1bvqA 48 :RQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=349 Number of alignments=65 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1bvqA 5 :ITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1bvqA 50 :TVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=357 Number of alignments=66 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1bvqA 48 :RQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1bvqA 104 :G T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=365 Number of alignments=67 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFPGS 1bvqA 46 :PWRQTVVER T0362 63 :EV 1bvqA 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 103 :PG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 8 number of extra gaps= 1 total=373 Number of alignments=68 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 2 total=378 Number of alignments=69 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 2 total=383 Number of alignments=70 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 1 total=388 Number of alignments=71 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1bvqA)A2 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 Warning: unaligning (T0362)L140 because last residue in template chain is (1bvqA)C140 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=395 Number of alignments=72 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 6 :TMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAINAQTRHRCAL 1bvqA 108 :QLVMRADEIRVFAMNDGERLRAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=398 Number of alignments=73 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1bvqA)V107 Warning: unaligning (T0362)E109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1bvqA)V107 Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 6 :TMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :ID 1bvqA 136 :YI Number of specific fragments extracted= 5 number of extra gaps= 2 total=403 Number of alignments=74 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 5 number of extra gaps= 1 total=408 Number of alignments=75 # 1bvqA read from 1bvqA/merged-a2m # found chain 1bvqA in template set Warning: unaligning (T0362)E134 because of BadResidue code BAD_PEPTIDE in next template residue (1bvqA)D135 Warning: unaligning (T0362)G135 because of BadResidue code BAD_PEPTIDE at template residue (1bvqA)D135 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1bvqA 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTV T0362 60 :VTPEV 1bvqA 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1bvqA 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1bvqA 104 :GG T0362 110 :QIAAHALIRHLAI 1bvqA 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALP 1bvqA 123 :DGERLRAIEVP T0362 136 :IDRW 1bvqA 136 :YIEL Number of specific fragments extracted= 7 number of extra gaps= 1 total=415 Number of alignments=76 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tbuA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tbuA expands to /projects/compbio/data/pdb/1tbu.pdb.gz 1tbuA:# T0362 read from 1tbuA/merged-a2m # 1tbuA read from 1tbuA/merged-a2m # adding 1tbuA to template set # found chain 1tbuA in template set Warning: unaligning (T0362)L8 because first residue in template chain is (1tbuA)K13 Warning: unaligning (T0362)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)R10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)F26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)I79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)G149 because last residue in template chain is (1tbuA)V116 T0362 11 :RVVRFGDTDAAGVMH 1tbuA 16 :ELVPLSPTSFVTKYL T0362 80 :HTGDALAMELR 1tbuA 41 :FGGTLVSQSLL T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKI 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=418 Number of alignments=77 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)F26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)I79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 T0362 11 :RVVRFGDTDAAGVMH 1tbuA 16 :ELVPLSPTSFVTKYL T0362 80 :HTGDALA 1tbuA 41 :FGGTLVS T0362 87 :MELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 1tbuA 54 :LHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=421 Number of alignments=78 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHFEFRCEEQI 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKGGDPRT Number of specific fragments extracted= 1 number of extra gaps= 0 total=422 Number of alignments=79 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHFEFRCE 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKGGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=423 Number of alignments=80 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)L8 because first residue in template chain is (1tbuA)K13 Warning: unaligning (T0362)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)R10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)F26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)I79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)G149 because last residue in template chain is (1tbuA)V116 T0362 11 :RVVRFGDTDAAGVMH 1tbuA 16 :ELVPLSPTSFVTKYL T0362 80 :HTGDALAMELR 1tbuA 41 :FGGTLVSQSLL T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKI 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=426 Number of alignments=81 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)R10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)F26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)I79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 T0362 11 :RVVRFGDTDAAGVMH 1tbuA 16 :ELVPLSPTSFVTKYL T0362 80 :HTGDALA 1tbuA 41 :FGGTLVS T0362 87 :MELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1tbuA 54 :LHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKL T0362 140 :LE 1tbuA 110 :SM Number of specific fragments extracted= 4 number of extra gaps= 1 total=430 Number of alignments=82 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHF 1tbuA 53 :SLHTVPLNFFPTSLHSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=431 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHFEFR 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=432 Number of alignments=83 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)R11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)C107 because last residue in template chain is (1tbuA)V116 T0362 1 :MNPENWLLLR 1tbuA 21 :SPTSFVTKYL T0362 21 :AGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEV 1tbuA 41 :FGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHV T0362 76 :RRPIHTGDALAMELRPERLNPNSFQVHFEFR 1tbuA 85 :QNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=435 Number of alignments=84 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)R11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)A20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)V101 because last residue in template chain is (1tbuA)V116 T0362 1 :MNPENWLLLR 1tbuA 21 :SPTSFVTKYL T0362 21 :AGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEV 1tbuA 41 :FGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHV T0362 77 :RPIHTGDALAMEL 1tbuA 85 :QNLRNGRNFIHKQ T0362 90 :RPERLNPNSFQ 1tbuA 105 :KLIFTSMILFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=439 Number of alignments=85 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHF 1tbuA 53 :SLHTVPLNFFPTSLHSYF Number of specific fragments extracted= 1 number of extra gaps= 0 total=440 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 86 :AMELRPERLNPNSFQVHFEFR 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKG Number of specific fragments extracted= 1 number of extra gaps= 0 total=441 Number of alignments=86 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)E141 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 T0362 136 :IDRWL 1tbuA 26 :VTKYL T0362 151 :I 1tbuA 41 :F Number of specific fragments extracted= 2 number of extra gaps= 0 total=443 Number of alignments=87 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=443 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because first residue in template chain is (1tbuA)K13 Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 16 :GDTDAAGVMHFHQLF 1tbuA 16 :ELVPLSPTSFVTKYL T0362 41 :LE 1tbuA 41 :FG T0362 48 :PADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 43 :GTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=446 Number of alignments=88 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 13 :VRFGDTD 1tbuA 18 :VPLSPTS T0362 25 :HFHQLF 1tbuA 25 :FVTKYL T0362 46 :LNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 41 :FGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=449 Number of alignments=89 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 3 :PENWLLLRR 1tbuA 21 :SPTSFVTKY T0362 25 :HFHQLFRWCHES 1tbuA 41 :FGGTLVSQSLLA T0362 42 :ESYGLNP 1tbuA 53 :SLHTVPL T0362 63 :EV 1tbuA 60 :NF T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 62 :FPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=454 Number of alignments=90 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 3 :PENWLLLRRV 1tbuA 21 :SPTSFVTKYL T0362 25 :HFHQLF 1tbuA 41 :FGGTLV T0362 35 :ESWEESLESY 1tbuA 47 :SQSLLASLHT T0362 60 :VTPEVA 1tbuA 57 :VPLNFF T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 63 :PTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=459 Number of alignments=91 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=460 Number of alignments=92 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 55 :HTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=461 Number of alignments=93 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 70 :HCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 65 :SLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=462 Number of alignments=94 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 T0362 3 :PENWLLLRRV 1tbuA 21 :SPTSFVTKYL T0362 25 :HFHQ 1tbuA 41 :FGGT T0362 33 :CHESWEESLESY 1tbuA 45 :LVSQSLLASLHT T0362 60 :VTPEVA 1tbuA 57 :VPLNFF T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 63 :PTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=467 Number of alignments=95 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because first residue in template chain is (1tbuA)K13 Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 16 :GDTDAAGVMHFHQLF 1tbuA 16 :ELVPLSPTSFVTKYL T0362 41 :LESYGLNPADIFPGSRK 1tbuA 41 :FGGTLVSQSLLASLHTV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=470 Number of alignments=96 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)H34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 13 :VRFGDT 1tbuA 18 :VPLSPT T0362 24 :MHFHQL 1tbuA 24 :SFVTKY T0362 33 :C 1tbuA 30 :L T0362 44 :YG 1tbuA 41 :FG T0362 48 :PADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 43 :GTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=475 Number of alignments=97 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)R14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 4 :ENWLLLRR 1tbuA 22 :PTSFVTKY T0362 13 :V 1tbuA 30 :L T0362 25 :HFHQLFRWCHESW 1tbuA 41 :FGGTLVSQSLLAS T0362 43 :SYGL 1tbuA 54 :LHTV T0362 57 :KSEVTP 1tbuA 58 :PLNFFP T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 64 :TSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 6 number of extra gaps= 0 total=481 Number of alignments=98 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 4 :ENWLLLRRV 1tbuA 22 :PTSFVTKYL T0362 25 :HFHQLFRWCHESW 1tbuA 41 :FGGTLVSQSLLAS T0362 43 :SYGLNP 1tbuA 54 :LHTVPL T0362 63 :EVAL 1tbuA 60 :NFFP T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 64 :TSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=486 Number of alignments=99 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 48 :PADIFPG 1tbuA 51 :LASLHTV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 2 number of extra gaps= 0 total=488 Number of alignments=100 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 58 :PLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=489 Number of alignments=101 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 64 :TSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=490 Number of alignments=102 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 T0362 3 :PENWLLLRRV 1tbuA 21 :SPTSFVTKYL T0362 25 :HFHQLFRWCHESW 1tbuA 41 :FGGTLVSQSLLAS T0362 43 :SYGLNP 1tbuA 54 :LHTVPL T0362 63 :EVAL 1tbuA 60 :NFFP T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 64 :TSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 5 number of extra gaps= 0 total=495 Number of alignments=103 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because first residue in template chain is (1tbuA)K13 Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)I14 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tbuA)L15 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 16 :GDTDAAGVMHFHQLF 1tbuA 16 :ELVPLSPTSFVTKYL T0362 41 :LESYGLNPADIF 1tbuA 41 :FGGTLVSQSLLA T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=498 Number of alignments=104 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)S40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 13 :VRFGDT 1tbuA 18 :VPLSPT T0362 24 :MHFHQLF 1tbuA 24 :SFVTKYL T0362 41 :LESYGLNPADIF 1tbuA 41 :FGGTLVSQSLLA T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 53 :SLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=502 Number of alignments=105 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 2 :NPENWLLLRRV 1tbuA 20 :LSPTSFVTKYL T0362 34 :HESWEESLESYGLNPADI 1tbuA 44 :TLVSQSLLASLHTVPLNF T0362 66 :LP 1tbuA 62 :FP T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 64 :TSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=506 Number of alignments=106 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Warning: unaligning (T0362)V13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tbuA)T40 Warning: unaligning (T0362)M24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tbuA)T40 Warning: unaligning (T0362)A121 because last residue in template chain is (1tbuA)V116 T0362 2 :NPENWLLLRRV 1tbuA 20 :LSPTSFVTKYL T0362 25 :HFHQLFRWCHESWE 1tbuA 41 :FGGTLVSQSLLASL T0362 44 :YGLNPADI 1tbuA 55 :HTVPLNFF T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 63 :PTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=510 Number of alignments=107 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 26 :FHQLFRWCHESWEESLESYGLN 1tbuA 55 :HTVPLNFFPTSLHSYFIKGGDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=511 Number of alignments=108 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=511 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 70 :HCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRH 1tbuA 65 :SLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILF Number of specific fragments extracted= 1 number of extra gaps= 0 total=512 Number of alignments=109 # 1tbuA read from 1tbuA/merged-a2m # found chain 1tbuA in template set T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1tbuA 63 :PTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFA Number of specific fragments extracted= 1 number of extra gaps= 0 total=513 Number of alignments=110 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j1yA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1j1yA/merged-a2m # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=515 Number of alignments=111 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=517 Number of alignments=112 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=519 Number of alignments=113 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=521 Number of alignments=114 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=523 Number of alignments=115 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=525 Number of alignments=116 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=527 Number of alignments=117 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=529 Number of alignments=118 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=531 Number of alignments=119 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESW 1j1yA 2 :RDPFMEALGLKVLHLAPGEAVVAGEVRADHLNLHGTA T0362 38 :EES 1j1yA 43 :LYA T0362 41 :LESYGLNP 1j1yA 47 :ADSAFALA T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=535 Number of alignments=120 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHA 1j1yA 64 :LSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=536 Number of alignments=121 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=537 Number of alignments=122 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 69 :IHCQADFRRPIHTG 1j1yA 64 :LSCRMDYFRPLGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=538 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 62 :PEVA 1j1yA 60 :PAVA T0362 69 :IHCQADFRRPIHTGDAL 1j1yA 64 :LSCRMDYFRPLGAGARV Number of specific fragments extracted= 2 number of extra gaps= 0 total=540 Number of alignments=123 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :PENW 1j1yA 3 :DPFM T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1j1yA 21 :AVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=543 Number of alignments=124 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=545 Number of alignments=125 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=548 Number of alignments=126 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=551 Number of alignments=127 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=553 Number of alignments=128 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1j1yA 20 :EAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=555 Number of alignments=129 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=557 Number of alignments=130 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=559 Number of alignments=131 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHES 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSA T0362 48 :PADIFPG 1j1yA 51 :FALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=563 Number of alignments=132 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=566 Number of alignments=133 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1j1yA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=570 Number of alignments=134 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1j1yA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=574 Number of alignments=135 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1j1yA 26 :EVRADHLNLHGTAHGGFLYALADSA T0362 48 :PADIFPG 1j1yA 51 :FALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=577 Number of alignments=136 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1j1yA 22 :VVAGEVRADHLNLHGTAHGGFLYALADSAFALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=579 Number of alignments=137 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1j1yA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=582 Number of alignments=138 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1j1yA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=585 Number of alignments=139 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :PENWLLLRRV 1j1yA 3 :DPFMEALGLK T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1j1yA 27 :VRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALS T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 66 :CRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=588 Number of alignments=140 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :PENWLLLRRV 1j1yA 3 :DPFMEALGLK T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESW 1j1yA 27 :VRADHLNLHGTAHGGFLYALADSAF T0362 50 :DIF 1j1yA 52 :ALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=592 Number of alignments=141 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :PE 1j1yA 3 :DP T0362 6 :WLLLR 1j1yA 14 :LHLAP T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1j1yA 25 :GEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=596 Number of alignments=142 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1j1yA)R2 Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 3 :P 1j1yA 3 :D T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=599 Number of alignments=143 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1j1yA 26 :EVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALS T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 66 :CRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=601 Number of alignments=144 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWE 1j1yA 26 :EVRADHLNLHGTAHGGFLYALADSAFA T0362 51 :IF 1j1yA 53 :LA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=604 Number of alignments=145 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1j1yA 25 :GEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1j1yA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVF Number of specific fragments extracted= 2 number of extra gaps= 0 total=606 Number of alignments=146 # 1j1yA read from 1j1yA/merged-a2m # found chain 1j1yA in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1j1yA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1j1yA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1j1yA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=608 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z6bA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z6bA expands to /projects/compbio/data/pdb/1z6b.pdb.gz 1z6bA:# T0362 read from 1z6bA/merged-a2m # 1z6bA read from 1z6bA/merged-a2m # adding 1z6bA to template set # found chain 1z6bA in template set Warning: unaligning (T0362)G45 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)L46 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 1 :MNPEN 1z6bA 87 :IDIED T0362 6 :WLLLRRVVRFGDTD 1z6bA 102 :FLLVDKVIYMQPNK T0362 28 :QLFRWCHESWEESLESY 1z6bA 116 :TIIGLKQVSTNEPFFNG T0362 47 :NPADIFPGSRKSEVTPEVALPIIHC 1z6bA 135 :PQKQIMPGVLQIEALAQLAGILCLK T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 8 number of extra gaps= 2 total=616 Number of alignments=148 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)G45 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)L46 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 2 :N 1z6bA 88 :D T0362 3 :PENWLLLRRVVRFGDTD 1z6bA 99 :RYPFLLVDKVIYMQPNK T0362 28 :QLFRWCHESWEESLESY 1z6bA 116 :TIIGLKQVSTNEPFFNG T0362 47 :NPADIFPGSRKSEVTPEVAL 1z6bA 135 :PQKQIMPGVLQIEALAQLAG T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 171 :FAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHAL 1z6bA 204 :IAKLSGVGYVNGKVVINIS T0362 117 :IRHLA 1z6bA 224 :MTFAL Number of specific fragments extracted= 8 number of extra gaps= 2 total=624 Number of alignments=149 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI Number of specific fragments extracted= 3 number of extra gaps= 1 total=627 Number of alignments=150 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 47 :NPADIFPGSRKSEVTPEV 1z6bA 135 :PQKQIMPGVLQIEALAQL T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 169 :FLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAA 1z6bA 204 :IAKLSGVGYVNGKVVI Number of specific fragments extracted= 4 number of extra gaps= 1 total=631 Number of alignments=151 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MN 1z6bA 87 :ID T0362 3 :PENWLLLRRVVRFGDT 1z6bA 99 :RYPFLLVDKVIYMQPN T0362 31 :RWCHESWEESLESYGLN 1z6bA 115 :KTIIGLKQVSTNEPFFN T0362 48 :PADIFPGSRKSEVTPEVALPIIHC 1z6bA 136 :QKQIMPGVLQIEALAQLAGILCLK T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 8 number of extra gaps= 1 total=639 Number of alignments=152 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)L46 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 2 :N 1z6bA 88 :D T0362 3 :PENWLLLRRVVRFGDT 1z6bA 99 :RYPFLLVDKVIYMQPN T0362 31 :RWCHESWEESLESYG 1z6bA 115 :KTIIGLKQVSTNEPF T0362 47 :NPADIFPGSRKSEVTPEVALPIIHC 1z6bA 135 :PQKQIMPGVLQIEALAQLAGILCLK T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 8 number of extra gaps= 2 total=647 Number of alignments=153 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI Number of specific fragments extracted= 3 number of extra gaps= 1 total=650 Number of alignments=154 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 48 :PADIFPGSRKSEVTPEVALPIIHC 1z6bA 136 :QKQIMPGVLQIEALAQLAGILCLK T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAH 1z6bA 204 :IAKLSGVGYVNGKVVIN Number of specific fragments extracted= 4 number of extra gaps= 1 total=654 Number of alignments=155 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 23 :VMHFHQLFRWCHESWEESLESY 1z6bA 139 :IMPGVLQIEALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 6 number of extra gaps= 1 total=660 Number of alignments=156 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLFR 1z6bA 135 :PQKQIMP T0362 32 :WCHESWEESLESY 1z6bA 148 :ALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=667 Number of alignments=157 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI Number of specific fragments extracted= 3 number of extra gaps= 1 total=670 Number of alignments=158 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 71 :CQADFRRPIHTGDALAMELRPERL 1z6bA 175 :DGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI Number of specific fragments extracted= 3 number of extra gaps= 1 total=673 Number of alignments=159 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set T0362 75 :FRRPIHTGDALAME 1z6bA 179 :WKKPVLPGDTLTMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=674 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set T0362 74 :DFRRPIHTGDALAME 1z6bA 178 :RWKKPVLPGDTLTMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=675 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EE 1z6bA 214 :NG T0362 110 :QIAAHALIRHLA 1z6bA 217 :VVINISEMTFAL Number of specific fragments extracted= 8 number of extra gaps= 2 total=683 Number of alignments=160 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EE 1z6bA 214 :NG T0362 110 :QIAAHALIRHLA 1z6bA 217 :VVINISEMTFAL Number of specific fragments extracted= 8 number of extra gaps= 2 total=691 Number of alignments=161 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 3 :PENWLLLRRVVRFGDTDAAG 1z6bA 113 :PNKTIIGLKQVSTNEPFFNG T0362 26 :FHQLFRWCHESWEESLES 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 6 number of extra gaps= 2 total=697 Number of alignments=162 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 3 :PENWLLLRRVVRFGDTDAAG 1z6bA 113 :PNKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLFRWCHESWEESLESY 1z6bA 140 :MPGVLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=704 Number of alignments=163 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S Number of specific fragments extracted= 6 number of extra gaps= 2 total=710 Number of alignments=164 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EEQIA 1z6bA 214 :NGKVV Number of specific fragments extracted= 7 number of extra gaps= 2 total=717 Number of alignments=165 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 2 :NPENWLLLRRVVRFGDTDAAG 1z6bA 112 :QPNKTIIGLKQVSTNEPFFNG T0362 26 :FHQLFRWCHESWEESLES 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRH 1z6bA 223 :EMTF T0362 121 :A 1z6bA 227 :A Number of specific fragments extracted= 8 number of extra gaps= 2 total=725 Number of alignments=166 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 2 :NPENWLLLRRVVRFGDTDAAG 1z6bA 112 :QPNKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLFRWCHESWEESLESY 1z6bA 140 :MPGVLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=732 Number of alignments=167 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EEQIAAHALIRHLA 1z6bA 215 :GKVVINISEMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=739 Number of alignments=168 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 5 :NWLLLRRV 1z6bA 96 :LPHRYPFL T0362 13 :VRFGDTDAAG 1z6bA 123 :VSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EE 1z6bA 214 :NG T0362 110 :QIAAHALIRHLA 1z6bA 217 :VVINISEMTFAL Number of specific fragments extracted= 9 number of extra gaps= 2 total=748 Number of alignments=169 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 4 :ENWLLLRRVVRFGDTDAAG 1z6bA 114 :NKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLF 1z6bA 140 :MPGVLQI T0362 31 :RWCHESWEESLES 1z6bA 148 :ALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=755 Number of alignments=170 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)I122 because last residue in template chain is (1z6bA)S229 T0362 4 :ENWLLLRRVVRFGDTDAAG 1z6bA 114 :NKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLFRWCHESWEESLESY 1z6bA 140 :MPGVLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=762 Number of alignments=171 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S Number of specific fragments extracted= 6 number of extra gaps= 2 total=768 Number of alignments=172 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 1 :MNPENWLLLRRVVRFGDTDAAG 1z6bA 111 :MQPNKTIIGLKQVSTNEPFFNG T0362 25 :HFHQLF 1z6bA 135 :PQKQIM T0362 31 :RWCHESWEESLESYGLNP 1z6bA 143 :VLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EEQIA 1z6bA 214 :NGKVV Number of specific fragments extracted= 7 number of extra gaps= 2 total=775 Number of alignments=173 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 3 :PENWLLLRRVVRFGDTDAAG 1z6bA 113 :PNKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLF 1z6bA 140 :MPGVLQI T0362 31 :RWCHESWEESLES 1z6bA 148 :ALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=782 Number of alignments=174 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 2 :NPENWLLLRRVVRFGDTDAAG 1z6bA 112 :QPNKTIIGLKQVSTNEPFFNG T0362 24 :MHFHQLFRWCHESWEESLESY 1z6bA 140 :MPGVLQIEALAQLAGILCLKS T0362 64 :VALPIIHCQ 1z6bA 167 :NLFLFAGVD T0362 73 :ADFRRPIHTGDALAMELRPERL 1z6bA 177 :VRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHLA 1z6bA 223 :EMTFAL Number of specific fragments extracted= 7 number of extra gaps= 2 total=789 Number of alignments=175 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)R10 because first residue in template chain is (1z6bA)D84 Warning: unaligning (T0362)H25 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)F26 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)P53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 11 :RVVRFGDT 1z6bA 85 :TSIDIEDI T0362 27 :HQLFRWCHESWEESLESYGLNPADIF 1z6bA 135 :PQKQIMPGVLQIEALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EEQIAAHALIRHLAI 1z6bA 214 :NGKVVINISEMTFAL Number of specific fragments extracted= 5 number of extra gaps= 2 total=794 Number of alignments=176 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)R10 because first residue in template chain is (1z6bA)D84 Warning: unaligning (T0362)H25 because of BadResidue code BAD_PEPTIDE in next template residue (1z6bA)F134 Warning: unaligning (T0362)F26 because of BadResidue code BAD_PEPTIDE at template residue (1z6bA)F134 Warning: unaligning (T0362)P53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 11 :RVVRFGDT 1z6bA 85 :TSIDIEDI T0362 27 :HQLFRWCHESWEESLESYGLNPADIF 1z6bA 135 :PQKQIMPGVLQIEALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :NSFQVHFEFRC 1z6bA 201 :SLGIAKLSGVG T0362 108 :EEQIAAHALIRHLAI 1z6bA 214 :NGKVVINISEMTFAL Number of specific fragments extracted= 5 number of extra gaps= 2 total=799 Number of alignments=177 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 3 :PENWLLLRRVVRFG 1z6bA 99 :RYPFLLVDKVIYMQ T0362 28 :QLFRWCHESWEESLES 1z6bA 145 :QIEALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 5 number of extra gaps= 1 total=804 Number of alignments=178 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)T61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 Warning: unaligning (T0362)N123 because last residue in template chain is (1z6bA)S229 T0362 2 :NPENWLLLRRVVRFGD 1z6bA 112 :QPNKTIIGLKQVSTNE T0362 32 :WCHESWEESLESYGLNP 1z6bA 144 :LQIEALAQLAGILCLKS T0362 62 :PEVALPIIH 1z6bA 167 :NLFLFAGVD T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 6 number of extra gaps= 1 total=810 Number of alignments=179 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=812 Number of alignments=180 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S Number of specific fragments extracted= 2 number of extra gaps= 1 total=814 Number of alignments=181 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)P62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 29 :LFRWCHESWEESLES 1z6bA 146 :IEALAQLAGILCLKS T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1z6bA 167 :NLFLFAGVDGVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAI 1z6bA 204 :IAKLSGVGYVNGKVVINISEMTFAL Number of specific fragments extracted= 4 number of extra gaps= 1 total=818 Number of alignments=182 # 1z6bA read from 1z6bA/merged-a2m # found chain 1z6bA in template set Warning: unaligning (T0362)A49 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z6bA)N166 Warning: unaligning (T0362)T61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z6bA)N166 Warning: unaligning (T0362)N95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1z6bA)S200 Warning: unaligning (T0362)P96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z6bA)S200 T0362 32 :WCHESWEESLESYGLNP 1z6bA 144 :LQIEALAQLAGILCLKS T0362 62 :PEVALPIIH 1z6bA 167 :NLFLFAGVD T0362 72 :QADFRRPIHTGDALAMELRPERL 1z6bA 176 :GVRWKKPVLPGDTLTMQANLISF T0362 97 :N 1z6bA 201 :S T0362 98 :SFQVHFEFRCEEQIAAHA 1z6bA 204 :IAKLSGVGYVNGKVVINI T0362 116 :LIRHL 1z6bA 223 :EMTFA T0362 122 :I 1z6bA 228 :L Number of specific fragments extracted= 7 number of extra gaps= 1 total=825 Number of alignments=183 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1psuA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1psuA expands to /projects/compbio/data/pdb/1psu.pdb.gz 1psuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 1psuA/merged-a2m # 1psuA read from 1psuA/merged-a2m # adding 1psuA to template set # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 28 :SMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALIRHL 1psuA 117 :QQQKTVALFRGKSH Number of specific fragments extracted= 3 number of extra gaps= 0 total=828 Number of alignments=184 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALIRHL 1psuA 117 :QQQKTVALFRGKSH Number of specific fragments extracted= 3 number of extra gaps= 0 total=831 Number of alignments=185 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALI 1psuA 117 :QQQKTVALFRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=834 Number of alignments=186 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALI 1psuA 117 :QQQKTVALFRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=837 Number of alignments=187 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 28 :SMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALIRHL 1psuA 117 :QQQKTVALFRGKSH Number of specific fragments extracted= 3 number of extra gaps= 0 total=840 Number of alignments=188 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFR 1psuA 15 :NDACAKALGIDIISMDEGFAVVTMTVTAQML T0362 32 :WCH 1psuA 50 :SCH T0362 35 :ESWEESLESYGLNPA 1psuA 57 :FSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAHALIRHL 1psuA 117 :QQQKTVALFRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=845 Number of alignments=189 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1psuA 78 :SACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=846 Number of alignments=190 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1psuA 78 :SACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAH 1psuA 117 :QQQKTVAL Number of specific fragments extracted= 2 number of extra gaps= 0 total=848 Number of alignments=191 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 71 :CQADFRRPIHTGDAL 1psuA 80 :CTIDFLRPGFAGDTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=849 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 68 :IIHCQADFRRPIHTGDALAM 1psuA 77 :ASACTIDFLRPGFAGDTLTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=850 Number of alignments=192 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A131 because last residue in template chain is (1psuA)R131 T0362 1 :M 1psuA 29 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 1psuA 118 :QQKTVAL T0362 125 :QTRHRC 1psuA 125 :FRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=855 Number of alignments=193 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNP 1psuA 29 :MDE T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 32 :GFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=859 Number of alignments=194 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNP 1psuA 1 :MSH T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 73 :LAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=863 Number of alignments=195 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :M 1psuA 1 :M T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=867 Number of alignments=196 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAA 1psuA 118 :QQKTVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=870 Number of alignments=197 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 1psuA 118 :QQKTVAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=873 Number of alignments=198 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 73 :LAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRH 1psuA 118 :QQKTVALFRGKS Number of specific fragments extracted= 3 number of extra gaps= 0 total=876 Number of alignments=199 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 3 number of extra gaps= 0 total=879 Number of alignments=200 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A131 because last residue in template chain is (1psuA)R131 T0362 1 :MNP 1psuA 1 :MSH T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 1psuA 118 :QQKTVAL T0362 125 :QTRHRC 1psuA 125 :FRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=884 Number of alignments=201 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNP 1psuA 1 :MSH T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 32 :GFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=888 Number of alignments=202 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MNP 1psuA 1 :MSH T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=892 Number of alignments=203 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :M 1psuA 1 :M T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 43 :SYG 1psuA 69 :NSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=897 Number of alignments=204 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAA 1psuA 118 :QQKTVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=900 Number of alignments=205 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 1psuA 118 :QQKTVAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=903 Number of alignments=206 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRH 1psuA 118 :QQKTVALFRGKS Number of specific fragments extracted= 3 number of extra gaps= 0 total=906 Number of alignments=207 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 43 :SYG 1psuA 69 :NSQ T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 72 :GLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=910 Number of alignments=208 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)H119 because last residue in template chain is (1psuA)R131 T0362 1 :MNPENW 1psuA 1 :MSHKAW T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHES 1psuA 34 :AVVTMTVTAQMLNGHQSCHGGQLFSLADTA T0362 48 :PADIF 1psuA 64 :FAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIR 1psuA 120 :KTVALFRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=915 Number of alignments=209 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A131 because last residue in template chain is (1psuA)R131 T0362 1 :MNPENW 1psuA 1 :MSHKAW T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEE 1psuA 34 :AVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAY T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 67 :ACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQI 1psuA 120 :KTVA T0362 124 :AQTRHRC 1psuA 124 :LFRGKSH Number of specific fragments extracted= 5 number of extra gaps= 0 total=920 Number of alignments=210 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)A121 because last residue in template chain is (1psuA)R131 T0362 1 :MN 1psuA 1 :MS T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 73 :LAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=924 Number of alignments=211 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (1psuA)R131 T0362 1 :M 1psuA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 30 :DEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRHL 1psuA 118 :QQKTVALFRGKSH Number of specific fragments extracted= 4 number of extra gaps= 0 total=928 Number of alignments=212 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAA 1psuA 70 :SQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=929 Number of alignments=213 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 109 :EQI 1psuA 118 :QQK Number of specific fragments extracted= 2 number of extra gaps= 0 total=931 Number of alignments=214 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 26 :FHQLFRWCHESWEESLESYG 1psuA 53 :GGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 73 :LAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRH 1psuA 118 :QQKTVALFRGKS Number of specific fragments extracted= 3 number of extra gaps= 0 total=934 Number of alignments=215 # 1psuA read from 1psuA/merged-a2m # found chain 1psuA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1psuA 31 :EGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1psuA 69 :NSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAHALIRH 1psuA 118 :QQKTVALFRGKS Number of specific fragments extracted= 3 number of extra gaps= 0 total=937 Number of alignments=216 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpmA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1vpmA/merged-a2m # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)L46 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)I148 because last residue in template chain is (1vpmA)L156 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 7 :VERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDE T0362 36 :SWEESLESYG 1vpmA 42 :AALTAMKHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQ 1vpmA 101 :TGE T0362 111 :IAAHALIRHLAIN 1vpmA 106 :LTTESFLTMVAVD T0362 125 :QTRHRCALPE 1vpmA 119 :ESGKPKPVPQ T0362 135 :GIDRWLEASGVGK 1vpmA 143 :APARKENRKKRAA Number of specific fragments extracted= 8 number of extra gaps= 1 total=945 Number of alignments=217 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)L46 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1vpmA 7 :VERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMK T0362 44 :YG 1vpmA 50 :AN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQ 1vpmA 101 :TGE T0362 111 :IAAHALIRHLAIN 1vpmA 106 :LTTESFLTMVAVD T0362 125 :QTRHRCALPE 1vpmA 119 :ESGKPKPVPQ T0362 135 :GIDRWLEASG 1vpmA 136 :EKRLYETAPA T0362 145 :VGK 1vpmA 153 :RAA Number of specific fragments extracted= 9 number of extra gaps= 1 total=954 Number of alignments=218 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)L46 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDE T0362 36 :SWEESLESYG 1vpmA 42 :AALTAMKHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQ 1vpmA 101 :TGE T0362 111 :IAAHALIRHLAIN 1vpmA 106 :LTTESFLTMVAVD Number of specific fragments extracted= 6 number of extra gaps= 1 total=960 Number of alignments=219 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)L46 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMK T0362 44 :YG 1vpmA 50 :AN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQ 1vpmA 101 :TGE T0362 111 :IAAHALIRHLAINAQTR 1vpmA 106 :LTTESFLTMVAVDESGK Number of specific fragments extracted= 6 number of extra gaps= 1 total=966 Number of alignments=220 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 1 :MNPEN 1vpmA 2 :IQSYP T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETAPA Number of specific fragments extracted= 7 number of extra gaps= 1 total=973 Number of alignments=221 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)S150 because last residue in template chain is (1vpmA)L156 T0362 1 :MNP 1vpmA 2 :IQS T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 9 :RSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEAS 1vpmA 119 :ESGKPKPVPQVEPQTEEEK Number of specific fragments extracted= 7 number of extra gaps= 1 total=980 Number of alignments=222 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLE 1vpmA 119 :ESGKPKPVPQVEPQTEE Number of specific fragments extracted= 6 number of extra gaps= 1 total=986 Number of alignments=223 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPE 1vpmA 119 :ESGKPKPVPQ Number of specific fragments extracted= 6 number of extra gaps= 1 total=992 Number of alignments=224 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 18 :VLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAINA 1vpmA 105 :TLTTESFLTMVAVDE T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 126 :VPQVEPQTEEEKRLYETAPARKENRKK Number of specific fragments extracted= 6 number of extra gaps= 1 total=998 Number of alignments=225 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 6 :PVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 66 :LPIIH 1vpmA 54 :VVTAS T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAINA 1vpmA 105 :TLTTESFLTMVAVDE T0362 126 :TRHRCAL 1vpmA 120 :SGKPKPV T0362 133 :PEGIDRWLEASGVGKIGSI 1vpmA 134 :EEEKRLYETAPARKENRKK Number of specific fragments extracted= 6 number of extra gaps= 1 total=1004 Number of alignments=226 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN Number of specific fragments extracted= 4 number of extra gaps= 1 total=1008 Number of alignments=227 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 66 :LPIIH 1vpmA 54 :VVTAS T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAINA 1vpmA 105 :TLTTESFLTMVAVDE Number of specific fragments extracted= 4 number of extra gaps= 1 total=1012 Number of alignments=228 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set T0362 74 :DFRRPIHTGDALAME 1vpmA 63 :DFKSSATVGDALELE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1013 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHF 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1014 Number of alignments=229 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 17 :LVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETA Number of specific fragments extracted= 6 number of extra gaps= 1 total=1020 Number of alignments=230 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 17 :LVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETA Number of specific fragments extracted= 6 number of extra gaps= 1 total=1026 Number of alignments=231 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 1 :MN 1vpmA 2 :IQ T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASGVGKIG 1vpmA 134 :EEEKRLYETAPARKEN Number of specific fragments extracted= 9 number of extra gaps= 1 total=1035 Number of alignments=232 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)S150 because last residue in template chain is (1vpmA)L156 T0362 1 :MN 1vpmA 2 :IQ T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASGV 1vpmA 134 :EEEKRLYETAPA Number of specific fragments extracted= 9 number of extra gaps= 1 total=1044 Number of alignments=233 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 13 :IQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETA Number of specific fragments extracted= 6 number of extra gaps= 1 total=1050 Number of alignments=234 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 13 :IQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGK 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYE Number of specific fragments extracted= 6 number of extra gaps= 1 total=1056 Number of alignments=235 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=1064 Number of alignments=236 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=1072 Number of alignments=237 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 18 :VLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETAPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=1078 Number of alignments=238 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 18 :VLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETAPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=1084 Number of alignments=239 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)G149 because last residue in template chain is (1vpmA)L156 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASGVGKI 1vpmA 141 :ETAPARKENRKKRAA Number of specific fragments extracted= 8 number of extra gaps= 1 total=1092 Number of alignments=240 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)S150 because last residue in template chain is (1vpmA)L156 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASGV 1vpmA 134 :EEEKRLYETAPA T0362 148 :IG 1vpmA 154 :AA Number of specific fragments extracted= 9 number of extra gaps= 1 total=1101 Number of alignments=241 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 13 :IQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEA 1vpmA 119 :ESGKPKPVPQVEPQTEEE Number of specific fragments extracted= 6 number of extra gaps= 1 total=1107 Number of alignments=242 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 13 :IQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNN T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASG 1vpmA 119 :ESGKPKPVPQVEPQTEEEKR Number of specific fragments extracted= 6 number of extra gaps= 1 total=1113 Number of alignments=243 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEAS 1vpmA 134 :EEEKRLYETA Number of specific fragments extracted= 8 number of extra gaps= 1 total=1121 Number of alignments=244 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHCQ 1vpmA 54 :VVTASID T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 62 :VDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EE 1vpmA 101 :TG T0362 110 :QIAAHALIRHLAIN 1vpmA 105 :TLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 8 number of extra gaps= 1 total=1129 Number of alignments=245 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 16 :RLVLPPDTNHLGTIFGGKVLAYIDE T0362 45 :GLNPADI 1vpmA 41 :IAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETAPA Number of specific fragments extracted= 7 number of extra gaps= 1 total=1136 Number of alignments=246 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 16 :RLVLPPDTNHLGTIFGGKVLAYIDE T0362 45 :GLNPADI 1vpmA 41 :IAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1vpmA 119 :ESGKPKPVPQVEPQTEEEKRLYETAPA Number of specific fragments extracted= 7 number of extra gaps= 1 total=1143 Number of alignments=247 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)E63 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)S150 because last residue in template chain is (1vpmA)L156 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1vpmA 8 :ERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMK T0362 60 :VTP 1vpmA 49 :HAN T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 54 :VVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGID 1vpmA 141 :ETAP T0362 139 :WLEASGVGKIG 1vpmA 145 :ARKENRKKRAA Number of specific fragments extracted= 7 number of extra gaps= 1 total=1150 Number of alignments=248 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 Warning: unaligning (T0362)S150 because last residue in template chain is (1vpmA)L156 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASGV 1vpmA 134 :EEEKRLYETAPA T0362 148 :IG 1vpmA 154 :AA Number of specific fragments extracted= 8 number of extra gaps= 1 total=1158 Number of alignments=249 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 16 :RLVLPPDTNHLGTIFGGKVLAYIDE T0362 45 :GLNPADI 1vpmA 41 :IAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALPE 1vpmA 119 :ESGKPKPVPQ Number of specific fragments extracted= 7 number of extra gaps= 1 total=1165 Number of alignments=250 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHE 1vpmA 13 :IQTRLVLPPDTNHLGTIFGGKVLAYIDE T0362 45 :GLNPADI 1vpmA 41 :IAALTAM T0362 60 :VTPE 1vpmA 48 :KHAN T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALPEGIDRW 1vpmA 119 :ESGKPKPVPQVEPQT Number of specific fragments extracted= 7 number of extra gaps= 1 total=1172 Number of alignments=251 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)E63 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMK T0362 60 :VTP 1vpmA 49 :HAN T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 54 :VVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRW 1vpmA 134 :EEEKRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1178 Number of alignments=252 # 1vpmA read from 1vpmA/merged-a2m # found chain 1vpmA in training set Warning: unaligning (T0362)V64 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1vpmA)A53 Warning: unaligning (T0362)A65 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1vpmA)A53 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vpmA 11 :RTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHA T0362 63 :E 1vpmA 51 :N T0362 66 :LPIIHC 1vpmA 54 :VVTASI T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1vpmA 61 :SVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHS T0362 108 :EEQIAAHALIRHLAIN 1vpmA 103 :ERTLTTESFLTMVAVD T0362 125 :QTRHRCALP 1vpmA 119 :ESGKPKPVP T0362 134 :EGIDRWLEASG 1vpmA 134 :EEEKRLYETAP Number of specific fragments extracted= 7 number of extra gaps= 1 total=1185 Number of alignments=253 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zkiA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zkiA expands to /projects/compbio/data/pdb/1zki.pdb.gz 1zkiA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 37, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 39, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 41, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 43, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 45, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 47, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 49, because occupancy 0.500 <= existing 0.500 in 1zkiA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 207, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 1zkiA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 309, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 311, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 313, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 315, because occupancy 0.500 <= existing 0.500 in 1zkiA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 528, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 532, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 540, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 542, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 544, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 887, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 889, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 891, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 893, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 895, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 897, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 899, because occupancy 0.500 <= existing 0.500 in 1zkiA Skipped atom 901, because occupancy 0.500 <= existing 0.500 in 1zkiA # T0362 read from 1zkiA/merged-a2m # 1zkiA read from 1zkiA/merged-a2m # adding 1zkiA to template set # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1zkiA 24 :SLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSSHGFD T0362 64 :VALPIIHCQADFRRPIHTGD 1zkiA 72 :RQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1188 Number of alignments=254 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :M 1zkiA 4 :M T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 25 :LGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 64 :VALPIIHCQADFRRPIHTGD 1zkiA 72 :RQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1192 Number of alignments=255 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSSHGFD T0362 64 :VALPIIHCQADFRRPIHTGD 1zkiA 72 :RQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1195 Number of alignments=256 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 64 :VALPIIHCQADFRRPIHTGD 1zkiA 72 :RQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1198 Number of alignments=257 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 24 :SLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1201 Number of alignments=258 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :M 1zkiA 4 :M T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 25 :LGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1205 Number of alignments=259 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1208 Number of alignments=260 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1211 Number of alignments=261 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 24 :SLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 59 :EVTPEVALPIIHCQADFRRPI 1zkiA 67 :SHGFDRQSVTLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1214 Number of alignments=262 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 24 :SLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 60 :VTPEVALPIIHCQADFRRPI 1zkiA 68 :HGFDRQSVTLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1217 Number of alignments=263 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 62 :PEVALPIIHCQADFRRPI 1zkiA 70 :FDRQSVTLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQ 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1219 Number of alignments=264 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 62 :PEVALPIIHCQADFRRPI 1zkiA 70 :FDRQSVTLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQI 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDKL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1221 Number of alignments=265 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 21 :AGVMHFHQLF 1zkiA 44 :GGVMHGGALF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1222 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 21 :AGVMHFHQLFRWCHESWEESLES 1zkiA 44 :GGVMHGGALFSLMDVTMGLACSS T0362 52 :FPGSRKSEVTPEVALP 1zkiA 67 :SHGFDRQSVTLECKIN T0362 75 :FRRPIHT 1zkiA 83 :YIRAVAD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1225 Number of alignments=266 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGLNPADI 1zkiA 68 :HGFDRQSV T0362 68 :IIHCQADFRRPI 1zkiA 76 :TLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1229 Number of alignments=267 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 26 :GDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGLNP 1zkiA 68 :HGFDR T0362 65 :ALPIIHCQADFRRPIH 1zkiA 73 :QSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1233 Number of alignments=268 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNP 1zkiA 4 :MPA T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 28 :GVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1237 Number of alignments=269 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNP 1zkiA 4 :MPA T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1241 Number of alignments=270 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 19 :DAAGVMHFHQLFRWCHESWEESLES 1zkiA 42 :NRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGLNPADI 1zkiA 68 :HGFDRQSV T0362 68 :IIHCQADFRRPI 1zkiA 76 :TLECKINYIRAV T0362 81 :TGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 88 :ADGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1245 Number of alignments=271 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 32 :VRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGLNP 1zkiA 68 :HGFDR T0362 65 :ALPIIHCQADFRRPIH 1zkiA 73 :QSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1249 Number of alignments=272 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1252 Number of alignments=273 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1255 Number of alignments=274 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1259 Number of alignments=275 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNP 1zkiA 4 :MPA T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1264 Number of alignments=276 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNP 1zkiA 4 :MPA T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1269 Number of alignments=277 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 1 :MNP 1zkiA 4 :MPA T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIH 1zkiA 71 :DRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1274 Number of alignments=278 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 19 :DAAGVMHFHQLFRWCHESWEESLES 1zkiA 42 :NRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1278 Number of alignments=279 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 32 :VRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1282 Number of alignments=280 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIHTG 1zkiA 71 :DRQSVTLECKINYIRAVADG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 91 :EVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1286 Number of alignments=281 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1zkiA 27 :DGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSS T0362 44 :YGL 1zkiA 68 :HGF T0362 63 :EVALPIIHCQADFRRPIH 1zkiA 71 :DRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1290 Number of alignments=282 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1zkiA)M4 Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 7 :LLLRRVVR 1zkiA 5 :PAREQMIS T0362 15 :FGDT 1zkiA 14 :YSEL T0362 19 :DAAGVMHFHQLFRWCHES 1zkiA 42 :NRGGVMHGGALFSLMDVT T0362 44 :YGLNPADI 1zkiA 60 :MGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=1296 Number of alignments=283 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1zkiA)M4 Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 7 :LLLRRVVR 1zkiA 5 :PAREQMIS T0362 15 :FGD 1zkiA 14 :YSE T0362 19 :DAAGVMHFHQLFRWCHES 1zkiA 42 :NRGGVMHGGALFSLMDVT T0362 44 :YGLNPADI 1zkiA 60 :MGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=1302 Number of alignments=284 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1zkiA)M4 Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 10 :R 1zkiA 5 :P T0362 11 :RVVRFGD 1zkiA 21 :DPVSLGD T0362 19 :DAAGVMHFHQLFRWCHESWEESLESY 1zkiA 42 :NRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1307 Number of alignments=285 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 2 :NPENWL 1zkiA 6 :AREQMI T0362 8 :LLRRVVRFG 1zkiA 29 :VAEVRLPMA T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 40 :LRNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1312 Number of alignments=286 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 19 :DAAGVMHFHQLFRWCHES 1zkiA 42 :NRGGVMHGGALFSLMDVT T0362 44 :YGLNPADI 1zkiA 60 :MGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1316 Number of alignments=287 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1zkiA)L129 T0362 20 :AAGVMHFHQLFRWCHES 1zkiA 43 :RGGVMHGGALFSLMDVT T0362 44 :YGLNPADI 1zkiA 60 :MGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1zkiA 68 :HGFDRQSVTLECKINYIRAVADGE T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1zkiA 92 :VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1320 Number of alignments=288 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 21 :AGVMHFHQLFRWCHESWEESLESY 1zkiA 44 :GGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1323 Number of alignments=289 # 1zkiA read from 1zkiA/merged-a2m # found chain 1zkiA in template set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1zkiA 41 :RNRGGVMHGGALFSLMDVTMGLACSSS T0362 60 :VTPEVALPIIHCQADFRRPIH 1zkiA 68 :HGFDRQSVTLECKINYIRAVA T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1zkiA 89 :DGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1326 Number of alignments=290 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yocA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1yocA/merged-a2m # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1yocA 1 :MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPK T0362 49 :ADIFPGSRKSEVTP 1yocA 68 :AELAAGTMTDASIP T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQ 1yocA 83 :GHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNL T0362 101 :VHFEFRCEEQIAAHALIRHLAI 1yocA 122 :VPVVAYVDDKPVFRAEITMYVS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1330 Number of alignments=291 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1yocA 1 :MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGY T0362 42 :ESYGLNPA 1yocA 49 :RREVLNHI T0362 50 :DIFPGSR 1yocA 69 :ELAAGTM T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQ 1yocA 77 :DASIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNL T0362 101 :VHFEFRCEEQIAAHALIRHLAI 1yocA 122 :VPVVAYVDDKPVFRAEITMYVS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1335 Number of alignments=292 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQ 1yocA 82 :AGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNL T0362 101 :VHFEFRCEEQIAAHALI 1yocA 122 :VPVVAYVDDKPVFRAEI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1337 Number of alignments=293 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQ 1yocA 82 :AGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNL T0362 101 :VHFEFRCEEQIAAHALI 1yocA 122 :VPVVAYVDDKPVFRAEI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1339 Number of alignments=294 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMH 1yocA 23 :FAPYFASIAPQFVELRPGYAEVTFP T0362 26 :FHQLFRWCHESWEESL 1yocA 52 :VLNHIGTVHAIALCNA T0362 49 :ADIFPGSRKSEVTP 1yocA 68 :AELAAGTMTDASIP T0362 63 :EVALPIIHCQADFRRPIH 1yocA 83 :GHRWIPRGMTVEYLAKAT T0362 82 :GD 1yocA 101 :GD T0362 85 :LAMELRP 1yocA 103 :VRAVADG T0362 92 :ERLNPNS 1yocA 112 :IDWQATG T0362 99 :FQVHFEFRCEEQIAAHALIRHLA 1yocA 120 :LVVPVVAYVDDKPVFRAEITMYV T0362 149 :GSI 1yocA 143 :SQA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1348 Number of alignments=295 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFR 1yocA 23 :FAPYFASIAPQFVELRPGYAEVTFPKRREVL T0362 32 :WCHESWEE 1yocA 58 :TVHAIALC T0362 40 :SLESYGLNPADIFPGS 1yocA 67 :AAELAAGTMTDASIPA T0362 65 :ALPIIHCQADFRRPIH 1yocA 85 :RWIPRGMTVEYLAKAT T0362 82 :GD 1yocA 101 :GD T0362 85 :LAMELRP 1yocA 103 :VRAVADG T0362 92 :ERLNPNS 1yocA 112 :IDWQATG T0362 99 :FQVHFEFRCEEQIAAHALIRHLA 1yocA 120 :LVVPVVAYVDDKPVFRAEITMYV T0362 149 :GSI 1yocA 143 :SQA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1357 Number of alignments=296 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 62 :PEVALPIIHCQADFRRPIH 1yocA 82 :AGHRWIPRGMTVEYLAKAT T0362 82 :GD 1yocA 101 :GD T0362 85 :LAMELRP 1yocA 103 :VRAVADG T0362 92 :ERLNPNS 1yocA 112 :IDWQATG T0362 99 :FQVHFEFRCEEQIAAHALI 1yocA 120 :LVVPVVAYVDDKPVFRAEI Number of specific fragments extracted= 5 number of extra gaps= 0 total=1362 Number of alignments=297 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 61 :TPEVALPIIHCQADFRRPIH 1yocA 81 :PAGHRWIPRGMTVEYLAKAT T0362 82 :GD 1yocA 101 :GD T0362 85 :LAMELRP 1yocA 103 :VRAVADG T0362 92 :ERLNPNS 1yocA 112 :IDWQATG T0362 99 :FQVHFEFRCEEQIAAHALI 1yocA 120 :LVVPVVAYVDDKPVFRAEI Number of specific fragments extracted= 5 number of extra gaps= 0 total=1367 Number of alignments=298 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHF 1yocA 23 :FAPYFASIAPQFVELRPGYAEVTFPK T0362 27 :HQLFRWCHESWEESL 1yocA 53 :LNHIGTVHAIALCNA T0362 49 :ADIFPGSRKSEVTP 1yocA 68 :AELAAGTMTDASIP T0362 63 :EVALPIIHCQADFRRPI 1yocA 83 :GHRWIPRGMTVEYLAKA T0362 81 :TGD 1yocA 100 :TGD T0362 85 :LAMELR 1yocA 103 :VRAVAD T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 112 :IDWQATGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=1374 Number of alignments=299 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHF 1yocA 23 :FAPYFASIAPQFVELRPGYAEVTFPK T0362 27 :HQLFRWCHESWE 1yocA 53 :LNHIGTVHAIAL T0362 46 :LNPADIFPGSRKSEVT 1yocA 65 :CNAAELAAGTMTDASI T0362 62 :PEVALPIIHCQADFRRPI 1yocA 82 :AGHRWIPRGMTVEYLAKA T0362 81 :TGD 1yocA 100 :TGD T0362 85 :LAMELR 1yocA 103 :VRAVAD T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 112 :IDWQATGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=1381 Number of alignments=300 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 68 :IIHCQADFRRPI 1yocA 88 :PRGMTVEYLAKA T0362 81 :TGD 1yocA 100 :TGD T0362 85 :LAMELR 1yocA 103 :VRAVAD T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALI 1yocA 112 :IDWQATGNLVVPVVAYVDDKPVFRAEI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1385 Number of alignments=301 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 63 :EVALPIIHCQADFRRPI 1yocA 83 :GHRWIPRGMTVEYLAKA T0362 81 :TGD 1yocA 100 :TGD T0362 85 :LAMELR 1yocA 103 :VRAVAD T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALI 1yocA 112 :IDWQATGNLVVPVVAYVDDKPVFRAEI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1389 Number of alignments=302 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 111 :IAAHALIRHLAINAQTRHRCALPEG 1yocA 59 :VHAIALCNAAELAAGTMTDASIPAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1390 Number of alignments=303 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 121 :AINA 1yocA 69 :ELAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1391 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 1 :MNP 1yocA 37 :LRP T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 40 :GYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yocA 80 :IPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAY T0362 108 :EEQIAAHALIRHLAIN 1yocA 129 :DDKPVFRAEITMYVSQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1395 Number of alignments=304 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 1 :MNP 1yocA 37 :LRP T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yocA 40 :GYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDA T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPN 1yocA 79 :SIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQAT T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 119 :NLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1399 Number of alignments=305 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)R127 because last residue in template chain is (1yocA)A145 T0362 1 :MN 1yocA 1 :MS T0362 4 :EN 1yocA 25 :PY T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 42 :AEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIH 1yocA 80 :IPAGHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLAI 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYVS T0362 126 :T 1yocA 144 :Q Number of specific fragments extracted= 7 number of extra gaps= 0 total=1406 Number of alignments=306 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)R127 because last residue in template chain is (1yocA)A145 T0362 1 :MNP 1yocA 1 :MSQ T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 39 :PGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIH 1yocA 80 :IPAGHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1411 Number of alignments=307 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1yocA 53 :LNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yocA 80 :IPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAY T0362 108 :EEQIAAHALIRH 1yocA 129 :DDKPVFRAEITM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1414 Number of alignments=308 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1yocA 53 :LNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPN 1yocA 80 :IPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQAT T0362 98 :SFQVHFEFRCEEQIAAHALIRH 1yocA 119 :NLVVPVVAYVDDKPVFRAEITM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1417 Number of alignments=309 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 42 :AEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIH 1yocA 80 :IPAGHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1421 Number of alignments=310 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 40 :GYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIH 1yocA 80 :IPAGHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1425 Number of alignments=311 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 1 :MNP 1yocA 1 :MSQ T0362 6 :WLLLRRVVRFGDTDAA 1yocA 4 :MMQMYQQVGPAQFSAM T0362 22 :GVMHFHQLFRWCHESWEESLESYG 1yocA 42 :AEVTFPKRREVLNHIGTVHAIALC T0362 47 :NPADIFPGSRKSEVTP 1yocA 66 :NAAELAAGTMTDASIP T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yocA 83 :GHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAY T0362 108 :EEQIAAHALIRHLAIN 1yocA 129 :DDKPVFRAEITMYVSQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=1431 Number of alignments=312 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 1 :MNP 1yocA 1 :MSQ T0362 6 :WLLLRRVVRFGDTDAA 1yocA 4 :MMQMYQQVGPAQFSAM T0362 22 :GVMHFHQLFRWCHESWEESLESYG 1yocA 42 :AEVTFPKRREVLNHIGTVHAIALC T0362 47 :NPADIFPGSRKSEVTP 1yocA 66 :NAAELAAGTMTDASIP T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPN 1yocA 83 :GHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQAT T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 119 :NLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=1437 Number of alignments=313 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNP 1yocA 1 :MSQ T0362 4 :EN 1yocA 25 :PY T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 42 :AEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 52 :FPG 1yocA 80 :IPA T0362 63 :EVALPIIHCQADFRRPIH 1yocA 83 :GHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=1444 Number of alignments=314 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 1 :MNP 1yocA 1 :MSQ T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 39 :PGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 52 :FPG 1yocA 80 :IPA T0362 63 :EVALPIIHCQADFRRPIHT 1yocA 83 :GHRWIPRGMTVEYLAKATG T0362 84 :ALAMELRPERLN 1yocA 102 :DVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLAI 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYVS T0362 150 :SI 1yocA 144 :QA Number of specific fragments extracted= 7 number of extra gaps= 0 total=1451 Number of alignments=315 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 18 :TDAAGVMHFHQLFRWCHESW 1yocA 53 :LNHIGTVHAIALCNAAELAA T0362 45 :GLNPADIFPG 1yocA 73 :GTMTDASIPA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yocA 83 :GHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAY T0362 108 :EEQIAAHALIRH 1yocA 129 :DDKPVFRAEITM Number of specific fragments extracted= 4 number of extra gaps= 0 total=1455 Number of alignments=316 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEES 1yocA 53 :LNHIGTVHAIALCNAAELAAGTM T0362 48 :PADIFPG 1yocA 76 :TDASIPA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPN 1yocA 83 :GHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQAT T0362 98 :SFQVHFEFRCEEQIAAHALIRH 1yocA 119 :NLVVPVVAYVDDKPVFRAEITM Number of specific fragments extracted= 4 number of extra gaps= 0 total=1459 Number of alignments=317 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 46 :FPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 52 :FPG 1yocA 80 :IPA T0362 63 :EVALPIIHCQADFRRPIH 1yocA 83 :GHRWIPRGMTVEYLAKAT T0362 83 :DALAMELRPERLN 1yocA 101 :GDVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1464 Number of alignments=318 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yocA 40 :GYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAS T0362 52 :FPG 1yocA 80 :IPA T0362 63 :EVALPIIHCQADFRRPIHT 1yocA 83 :GHRWIPRGMTVEYLAKATG T0362 84 :ALAMELRPERLN 1yocA 102 :DVRAVADGSQID T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1469 Number of alignments=319 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1yocA)M1 T0362 4 :ENWLLLRRVVRFGDTDAA 1yocA 2 :SQMMQMYQQVGPAQFSAM T0362 26 :FHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKIGSI 1yocA 20 :IGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAYVDDKPVFRAEITMYVSQA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1471 Number of alignments=320 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)L8 because first residue in template chain is (1yocA)M1 T0362 9 :LRRVVRFGDTDAAGV 1yocA 2 :SQMMQMYQQVGPAQF T0362 26 :FHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELR 1yocA 20 :IGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGH T0362 93 :RLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1yocA 85 :RWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAYVDDK T0362 140 :LEASGVGKIGSI 1yocA 134 :FRAEITMYVSQA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1475 Number of alignments=321 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)L8 because first residue in template chain is (1yocA)M1 Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 11 :RVVRFG 1yocA 35 :VELRPG T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1yocA 53 :LNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1yocA 80 :IPAGHRWIPRGMTVEYLAKATGDVRAVAD T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 116 :ATGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1479 Number of alignments=322 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1yocA)M1 Warning: unaligning (T0362)A124 because last residue in template chain is (1yocA)A145 T0362 10 :RRVVRFGD 1yocA 41 :YAEVTFPK T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1yocA 53 :LNHIGTVHAIALCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHT 1yocA 80 :IPAGHRWIPRGMTVEYLAKATG T0362 84 :ALAMELRP 1yocA 102 :DVRAVADG T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLAIN 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYVSQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1484 Number of alignments=323 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 27 :HQLFRWCHESWEESLESYGLNPADIF 1yocA 90 :GMTVEYLAKATGDVRAVADGSQIDWQ T0362 60 :VTPEVALPII 1yocA 116 :ATGNLVVPVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1486 Number of alignments=324 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 57 :KSEVTPEVALPII 1yocA 113 :DWQATGNLVVPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1487 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 29 :LFRWCHESWEESLESY 1yocA 64 :LCNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1yocA 80 :IPAGHRWIPRGMTVEYLAKATGDVRAVAD T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 116 :ATGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1490 Number of alignments=325 # 1yocA read from 1yocA/merged-a2m # found chain 1yocA in training set T0362 27 :HQLFRWCHESWEESL 1yocA 65 :CNAAELAAGTMTDAS T0362 60 :VTPEVALPIIHCQADFRRPIHT 1yocA 80 :IPAGHRWIPRGMTVEYLAKATG T0362 84 :ALAMELRP 1yocA 102 :DVRAVADG T0362 96 :PNSFQVHFEFRCEEQIAAHALIRHLA 1yocA 117 :TGNLVVPVVAYVDDKPVFRAEITMYV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1494 Number of alignments=326 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lo7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1lo7A/merged-a2m # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHAL 1lo7A 106 :DVQLVMRAD T0362 117 :IRHLAINAQTRHRCALPEGIDRWL 1lo7A 117 :RVFAMNDGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1499 Number of alignments=327 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHAL 1lo7A 106 :DVQLVMRAD T0362 117 :IRHLAINAQTRHRCALPEGIDRWL 1lo7A 117 :RVFAMNDGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1504 Number of alignments=328 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 5 :ITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHAL 1lo7A 106 :DVQLVMRAD T0362 117 :IRHLAINAQTRHRCALPEGIDRWL 1lo7A 117 :RVFAMNDGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1509 Number of alignments=329 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHAL 1lo7A 106 :DVQLVMRAD T0362 117 :IRHLAINAQTRHRCALPEGIDRWL 1lo7A 117 :RVFAMNDGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1514 Number of alignments=330 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1519 Number of alignments=331 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1524 Number of alignments=332 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1529 Number of alignments=333 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPGSR 1lo7A 48 :RQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1534 Number of alignments=334 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFP 1lo7A 46 :PWRQTVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 53 :ERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQ 1lo7A 106 :DVQLVMRADEIRVFAMND T0362 126 :TRHRCALPEGIDRWL 1lo7A 126 :RLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1539 Number of alignments=335 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFP 1lo7A 46 :PWRQTVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 53 :ERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQ 1lo7A 106 :DVQLVMRADEIRVFAMND T0362 126 :TRHRCALPEGIDRWL 1lo7A 126 :RLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1544 Number of alignments=336 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFP 1lo7A 46 :PWRQTVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 53 :ERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQ 1lo7A 106 :DVQLVMRADEIRVFAMND T0362 126 :TRHRCALPEGIDRWL 1lo7A 126 :RLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1549 Number of alignments=337 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFP 1lo7A 46 :PWRQTVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 53 :ERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQ 1lo7A 106 :DVQLVMRADEIRVFAMND T0362 126 :TRHRCALPEGIDRW 1lo7A 126 :RLRAIEVPADYIEL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1554 Number of alignments=338 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKS 1lo7A 11 :IEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1lo7A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 2 number of extra gaps= 0 total=1556 Number of alignments=339 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPAD 1lo7A 7 :MQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWR T0362 57 :KSEVT 1lo7A 49 :QTVVE T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1lo7A 55 :GIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 3 number of extra gaps= 0 total=1559 Number of alignments=340 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1lo7A 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 6 number of extra gaps= 0 total=1565 Number of alignments=341 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1lo7A 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 6 number of extra gaps= 0 total=1571 Number of alignments=342 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIF 1lo7A 49 :QTV T0362 60 :VTPEV 1lo7A 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 103 :PG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1578 Number of alignments=343 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1lo7A)A2 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIF 1lo7A 47 :WRQTV T0362 60 :VTPEV 1lo7A 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1585 Number of alignments=344 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1lo7A 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo7A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1591 Number of alignments=345 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1lo7A 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo7A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1597 Number of alignments=346 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIF 1lo7A 49 :QTV T0362 60 :VTPEV 1lo7A 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 103 :PG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1604 Number of alignments=347 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIF 1lo7A 47 :WRQTV T0362 60 :VTPEV 1lo7A 52 :VERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1611 Number of alignments=348 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo7A 48 :RQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1618 Number of alignments=349 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1lo7A 50 :TVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1625 Number of alignments=350 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo7A 48 :RQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1632 Number of alignments=351 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1lo7A)A2 T0362 3 :P 1lo7A 3 :R T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFPGS 1lo7A 46 :PWRQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 8 number of extra gaps= 0 total=1640 Number of alignments=352 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 4 :SITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo7A 48 :RQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo7A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1647 Number of alignments=353 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo7A 5 :ITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1lo7A 50 :TVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo7A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1654 Number of alignments=354 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo7A 48 :RQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo7A 104 :G T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1661 Number of alignments=355 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGL T0362 47 :NPADIFPGS 1lo7A 46 :PWRQTVVER T0362 63 :EV 1lo7A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=1668 Number of alignments=356 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 4 number of extra gaps= 0 total=1672 Number of alignments=357 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 4 number of extra gaps= 0 total=1676 Number of alignments=358 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo7A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 4 number of extra gaps= 0 total=1680 Number of alignments=359 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo7A)A2 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1685 Number of alignments=360 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 6 :TMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQTRHRCAL 1lo7A 106 :DVQLVMRADEIRVFAMNDGERLRAI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1688 Number of alignments=361 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 6 :TMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo7A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGID 1lo7A 123 :DGERLRAIEVPADYI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1692 Number of alignments=362 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo7A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1696 Number of alignments=363 # 1lo7A read from 1lo7A/merged-a2m # found chain 1lo7A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo7A 3 :RSITMQQRIEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo7A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo7A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo7A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo7A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1701 Number of alignments=364 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wluA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wluA expands to /projects/compbio/data/pdb/1wlu.pdb.gz 1wluA:# T0362 read from 1wluA/merged-a2m # 1wluA read from 1wluA/merged-a2m # adding 1wluA to template set # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1703 Number of alignments=365 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MN 1wluA 1 :MR T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1wluA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTR T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1706 Number of alignments=366 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1708 Number of alignments=367 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1wluA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTR T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIR 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1710 Number of alignments=368 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1712 Number of alignments=369 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :M 1wluA 1 :M T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 16 :LAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1715 Number of alignments=370 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1717 Number of alignments=371 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 17 :APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1719 Number of alignments=372 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1721 Number of alignments=373 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 15 :HLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1723 Number of alignments=374 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1wluA 64 :LSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=1724 Number of alignments=375 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQI 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1725 Number of alignments=376 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 69 :IHCQADFRRPIHTG 1wluA 64 :LSCRMDYFRPLGAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1726 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 62 :PEVA 1wluA 60 :PAVA T0362 69 :IHCQADFRRPIHTGDAL 1wluA 64 :LSCRMDYFRPLGAGARV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1728 Number of alignments=377 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENW 1wluA 1 :MRDPFM T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1wluA 21 :AVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1731 Number of alignments=378 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1733 Number of alignments=379 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1736 Number of alignments=380 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1739 Number of alignments=381 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1741 Number of alignments=382 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 1wluA 20 :EAVVAGEVRADHLNLHGTAHGGFLYALADSAFALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1743 Number of alignments=383 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1745 Number of alignments=384 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1747 Number of alignments=385 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHES 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSA T0362 48 :PADIFPG 1wluA 51 :FALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1751 Number of alignments=386 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1754 Number of alignments=387 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1wluA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1758 Number of alignments=388 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1wluA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1762 Number of alignments=389 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1wluA 26 :EVRADHLNLHGTAHGGFLYALADSA T0362 48 :PADIFPG 1wluA 51 :FALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1765 Number of alignments=390 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1wluA 22 :VVAGEVRADHLNLHGTAHGGFLYALADSAFALASNT T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 58 :RGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1767 Number of alignments=391 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1wluA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1770 Number of alignments=392 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG T0362 63 :EV 1wluA 60 :PA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1773 Number of alignments=393 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRV 1wluA 1 :MRDPFMEALGLK T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1wluA 27 :VRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALS T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 66 :CRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1776 Number of alignments=394 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPENWLLLRRV 1wluA 1 :MRDPFMEALGLK T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESW 1wluA 27 :VRADHLNLHGTAHGGFLYALADSAF T0362 50 :DIF 1wluA 52 :ALA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1780 Number of alignments=395 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNPEN 1wluA 1 :MRDPF T0362 6 :WLLLR 1wluA 14 :LHLAP T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1wluA 25 :GEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1784 Number of alignments=396 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 1 :MNP 1wluA 1 :MRD T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1787 Number of alignments=397 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1wluA 26 :EVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALS T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 66 :CRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1789 Number of alignments=398 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWE 1wluA 26 :EVRADHLNLHGTAHGGFLYALADSAFA T0362 51 :IF 1wluA 53 :LA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 55 :SNTRGPAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1792 Number of alignments=399 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1wluA 25 :GEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPA T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1wluA 62 :VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVF Number of specific fragments extracted= 2 number of extra gaps= 0 total=1794 Number of alignments=400 # 1wluA read from 1wluA/merged-a2m # found chain 1wluA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1wluA)L117 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1wluA 18 :PGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1wluA 61 :AVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1796 Number of alignments=401 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t82A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1t82A/merged-a2m # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIH 1t82A 15 :TIPVSEFMQIAPLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRPE 1t82A 97 :PEVKVRWP T0362 93 :RLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 113 :RGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1800 Number of alignments=402 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRW 1t82A 17 :PVSEFMQIAPLSFTDGELSVSAPLAPNINL T0362 34 :HESWE 1t82A 47 :HHTMF T0362 42 :ESYGLNPADIFPG 1t82A 52 :AGSIYTIMTLTGW T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIH 1t82A 69 :LQQQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRPE 1t82A 97 :PEVKVRWP T0362 93 :RLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 113 :RGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 7 number of extra gaps= 0 total=1807 Number of alignments=403 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 58 :SEVTPEVALPIIHCQADFRRPIH 1t82A 72 :QLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRPE 1t82A 97 :PEVKVRWP T0362 93 :RLNPNSFQVHFEFRCEEQIAAHALI 1t82A 113 :RGRKAKVKLEVQLFCDGKLCAQFDG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1811 Number of alignments=404 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 57 :KSEVTPEVALPIIHCQADFRRPIH 1t82A 71 :QQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRPE 1t82A 97 :PEVKVRWP T0362 93 :RLNPNSFQVHFEFRCEEQIAAHALIR 1t82A 113 :RGRKAKVKLEVQLFCDGKLCAQFDGL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1815 Number of alignments=405 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMH 1t82A 15 :TIPVSEFMQIAPLSFTDGELSVSAP T0362 26 :FHQLFRWCHESWEESL 1t82A 43 :NINLHHTMFAGSIYTI T0362 49 :ADIFPGSR 1t82A 59 :MTLTGWGM T0362 57 :KSEVTPEVALPIIHCQADFRRPIH 1t82A 71 :QQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRP 1t82A 97 :PEVKVRW T0362 92 :ERLNPNSFQ 1t82A 111 :LQRGRKAKV T0362 101 :VHFEFRCEEQIAAHALIRHLAI 1t82A 121 :LEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 8 number of extra gaps= 0 total=1823 Number of alignments=406 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 1 :MNPENWLLLRRVVRFGD 1t82A 15 :TIPVSEFMQIAPLSFTD T0362 22 :GVMHFHQLFRWCH 1t82A 32 :GELSVSAPLAPNI T0362 36 :SWEESL 1t82A 45 :NLHHTM T0362 44 :YGLNPADIFPGSR 1t82A 54 :SIYTIMTLTGWGM T0362 57 :KSEVTPEVALPIIHCQADFRRPIH 1t82A 71 :QQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRP 1t82A 97 :PEVKVRW T0362 92 :ERLNPNSFQ 1t82A 111 :LQRGRKAKV T0362 101 :VHFEFRCEEQIAAHALIRHLAI 1t82A 121 :LEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 9 number of extra gaps= 0 total=1832 Number of alignments=407 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 58 :SEVTPEVALPIIHCQADFRRPIH 1t82A 72 :QLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRP 1t82A 97 :PEVKVRW T0362 92 :ERLNPNSFQ 1t82A 111 :LQRGRKAKV T0362 101 :VHFEFRCEEQIAAHALIRHLAI 1t82A 121 :LEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1837 Number of alignments=408 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 57 :KSEVTPEVALPIIHCQADFRRPIH 1t82A 71 :QQLLNVDGDIVLADAHIRYLAPVT T0362 82 :GD 1t82A 95 :SA T0362 85 :LAMELRP 1t82A 97 :PEVKVRW T0362 92 :ERLNPNSFQ 1t82A 111 :LQRGRKAKV T0362 101 :VHFEFRCEEQIAAHALIRH 1t82A 121 :LEVQLFCDGKLCAQFDGLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=1842 Number of alignments=409 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 1 :MNPENWLLLR 1t82A 1 :MDELLNRLRQ T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNS 1t82A 25 :APLSFTDGELSVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNLSPLQ T0362 99 :FQVHFEFRCEEQIAAHALIRHLAI 1t82A 119 :VKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1845 Number of alignments=410 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 1 :MNPENWLLLRRV 1t82A 1 :MDELLNRLRQTW T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1t82A 16 :IPVSEFMQIAPLSFTDGELSVSAPLAPNINLHH T0362 50 :DIFPGSRKSE 1t82A 49 :TMFAGSIYTI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAM 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKV T0362 97 :NSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 117 :AKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1850 Number of alignments=411 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 87 :MELRPERLNPNSFQVHFEF 1t82A 22 :MQIAPLSFTDGELSVSAPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1851 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 75 :FRRPI 1t82A 89 :YLAPV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1852 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 111 :IAAHALIRHLA 1t82A 81 :VLADAHIRYLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1853 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1853 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R14 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)Q125 because last residue in template chain is (1t82A)P143 T0362 15 :FGDTDAAGVMHFHQLF 1t82A 2 :DELLNRLRQTWHSTIP T0362 31 :RWCH 1t82A 20 :EFMQ T0362 35 :ESWEESLESYGLNPADIFPGSRKSEVTPEVALP 1t82A 35 :SVSAPLAPNINLHHTMFAGSIYTIMTLTGWGMV T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1t82A 82 :LADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1858 Number of alignments=412 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 4 :ENWLLLR 1t82A 31 :DGELSVS T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1t82A 38 :APLAPNINLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1863 Number of alignments=413 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R11 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 16 :GDTDAAGVMHFHQLFRWCHESWEESLES 1t82A 42 :PNINLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1867 Number of alignments=414 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 8 :LLRRVVRFG 1t82A 33 :ELSVSAPLA T0362 17 :DTDAAGVMH 1t82A 43 :NINLHHTMF T0362 26 :FHQLFRWCHESWEESLES 1t82A 55 :IYTIMTLTGWGMVWLQQQ T0362 44 :YGL 1t82A 74 :LNV T0362 63 :EVALPIIHCQADFRRPIHTGD 1t82A 77 :DGDIVLADAHIRYLAPVTSAP T0362 86 :AMELRPERL 1t82A 98 :EVKVRWPDT T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 7 number of extra gaps= 0 total=1874 Number of alignments=415 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLES 1t82A 44 :INLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1878 Number of alignments=416 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLES 1t82A 44 :INLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1882 Number of alignments=417 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 16 :GDTDAAGVMHFHQLFRWCHESWEESLES 1t82A 42 :PNINLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1886 Number of alignments=418 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 4 :ENWLL 1t82A 31 :DGELS T0362 11 :RVVRFG 1t82A 36 :VSAPLA T0362 17 :DTDAAGVMH 1t82A 43 :NINLHHTMF T0362 26 :FHQLFRWCHESWEESLES 1t82A 55 :IYTIMTLTGWGMVWLQQQ T0362 44 :YGL 1t82A 74 :LNV T0362 63 :EVALPIIHCQADFRRPIHTGD 1t82A 77 :DGDIVLADAHIRYLAPVTSAP T0362 86 :AMELRPERL 1t82A 98 :EVKVRWPDT T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 8 number of extra gaps= 0 total=1894 Number of alignments=419 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R11 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)Q125 because last residue in template chain is (1t82A)P143 T0362 12 :VVRFGDT 1t82A 7 :RLRQTWH T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1t82A 45 :NLHHTMFAGSIYTIMTLTGWGMV T0362 46 :LNPADIFPG 1t82A 68 :WLQQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1899 Number of alignments=420 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 4 :ENWLLLRRVVRFGDT 1t82A 7 :RLRQTWHSTIPVSEF T0362 19 :DAAGVMHFHQLFRWCHESWEESLE 1t82A 45 :NLHHTMFAGSIYTIMTLTGWGMVW T0362 47 :NPADIFPG 1t82A 69 :LQQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1904 Number of alignments=421 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 8 :LLRRVV 1t82A 33 :ELSVSA T0362 14 :RFGDTDAAGVMHFHQLFRWCHESWEESLES 1t82A 40 :LAPNINLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADIFPG 1t82A 70 :QQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELR 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWP T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1909 Number of alignments=422 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 8 :LLRRVVRFG 1t82A 33 :ELSVSAPLA T0362 17 :DTDAAGVMH 1t82A 43 :NINLHHTMF T0362 26 :FHQLFRWCHESWEESLES 1t82A 55 :IYTIMTLTGWGMVWLQQQ T0362 44 :YGL 1t82A 74 :LNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAME 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVR T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 6 number of extra gaps= 0 total=1915 Number of alignments=423 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1t82A 44 :INLHHTMFAGSIYTIMTLTGWGMV T0362 46 :LNPADIFPG 1t82A 68 :WLQQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1919 Number of alignments=424 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1t82A 44 :INLHHTMFAGSIYTIMTLTGWGMVW T0362 47 :NPADIFPG 1t82A 69 :LQQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1923 Number of alignments=425 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 16 :GDTDAAGVMHFHQLFRWCHESWEESLES 1t82A 42 :PNINLHHTMFAGSIYTIMTLTGWGMVWL T0362 48 :PADIFPG 1t82A 70 :QQQLLNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELR 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVRWP T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1927 Number of alignments=426 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 8 :LLRRVVRFG 1t82A 33 :ELSVSAPLA T0362 17 :DTDAAGVMH 1t82A 43 :NINLHHTMF T0362 26 :FHQLFRWCHESWEESLES 1t82A 55 :IYTIMTLTGWGMVWLQQQ T0362 44 :YGL 1t82A 74 :LNV T0362 63 :EVALPIIHCQADFRRPIHTGDALAME 1t82A 77 :DGDIVLADAHIRYLAPVTSAPEVKVR T0362 91 :PERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 111 :LQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 6 number of extra gaps= 0 total=1933 Number of alignments=427 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R14 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 15 :FGDTDAAGVMHFHQLFR 1t82A 2 :DELLNRLRQTWHSTIPV T0362 32 :WCHESWEESLESYGLNPADIFP 1t82A 21 :FMQIAPLSFTDGELSVSAPLAP T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 68 :WLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 89 :LRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 109 :SPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1937 Number of alignments=428 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R14 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 15 :FGDTDAAGVMHFHQLF 1t82A 2 :DELLNRLRQTWHSTIP T0362 31 :RWCHESWEESLESYGLNPADIFP 1t82A 20 :EFMQIAPLSFTDGELSVSAPLAP T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 68 :WLQQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 89 :LRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 109 :SPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1941 Number of alignments=429 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)R11 because first residue in template chain is (1t82A)M1 Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 12 :VVR 1t82A 35 :SVS T0362 16 :GDTDAAGVMHFHQLFRWCHESWEES 1t82A 47 :HHTMFAGSIYTIMTLTGWGMVWLQQ T0362 50 :DI 1t82A 72 :QL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1946 Number of alignments=430 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 10 :RRVVRF 1t82A 33 :ELSVSA T0362 16 :GDTDAA 1t82A 47 :HHTMFA T0362 26 :FHQLFRWCHESWEESLES 1t82A 55 :IYTIMTLTGWGMVWLQQQ T0362 51 :I 1t82A 73 :L T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 6 number of extra gaps= 0 total=1952 Number of alignments=431 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 48 :PADI 1t82A 70 :QQQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 89 :LRPERLNPNSFQVHFEFRCEEQIAAH 1t82A 109 :SPLQRGRKAKVKLEVQLFCDGKLCAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1955 Number of alignments=432 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 49 :A 1t82A 71 :Q T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 72 :QLLNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 89 :LRPERLNPNSFQVHFEFRCEEQIAAHAL 1t82A 109 :SPLQRGRKAKVKLEVQLFCDGKLCAQFD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1958 Number of alignments=433 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set T0362 22 :GVMHFHQLFRWCHESWEE 1t82A 53 :GSIYTIMTLTGWGMVWLQ T0362 49 :ADI 1t82A 71 :QQL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1962 Number of alignments=434 # 1t82A read from 1t82A/merged-a2m # found chain 1t82A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1t82A)P143 T0362 27 :HQLFRWCHESWEESLES 1t82A 56 :YTIMTLTGWGMVWLQQQ T0362 51 :I 1t82A 73 :L T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAME 1t82A 74 :LNVDGDIVLADAHIRYLAPVTSAPEVKVR T0362 95 :NPNSFQVHFEFRCEEQIAAHALIRHLAI 1t82A 115 :RKAKVKLEVQLFCDGKLCAQFDGLYVSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1966 Number of alignments=435 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cyeA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2cyeA/merged-a2m # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1971 Number of alignments=436 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1976 Number of alignments=437 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1981 Number of alignments=438 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGV 2cyeA 111 :GGRPAPLPEAIRERIRALEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1985 Number of alignments=439 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 46 :L 2cyeA 47 :W T0362 60 :VTPEV 2cyeA 48 :LEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1991 Number of alignments=440 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 46 :L 2cyeA 47 :W T0362 60 :VTPEV 2cyeA 48 :LEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1997 Number of alignments=441 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 46 :L 2cyeA 47 :W T0362 60 :VTPEV 2cyeA 48 :LEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2003 Number of alignments=442 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)G45 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 46 :L 2cyeA 47 :W T0362 60 :VTPEV 2cyeA 48 :LEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGV 2cyeA 111 :GGRPAPLPEAIRERIRALEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2008 Number of alignments=443 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2013 Number of alignments=444 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEAS 2cyeA 111 :GGRPAPLPEAIRERIRAL T0362 148 :IGSI 2cyeA 129 :EGRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=2019 Number of alignments=445 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLE 2cyeA 111 :GGRPAPLPEAIRERIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2023 Number of alignments=446 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 3 :GFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEA 2cyeA 111 :GGRPAPLPEAIRERIRA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2027 Number of alignments=447 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHAL 2cyeA 59 :EVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2028 Number of alignments=448 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 2cyeA 52 :HFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2029 Number of alignments=449 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 47 :WLEEGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2033 Number of alignments=450 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 48 :LEEGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2038 Number of alignments=451 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2043 Number of alignments=452 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2048 Number of alignments=453 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 47 :WLEEGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2051 Number of alignments=454 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :P 2cyeA 47 :W T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 48 :LEEGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2055 Number of alignments=455 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2059 Number of alignments=456 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2063 Number of alignments=457 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2068 Number of alignments=458 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :MN 2cyeA 1 :ME T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 3 :GFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2073 Number of alignments=459 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2078 Number of alignments=460 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 1 :M 2cyeA 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2083 Number of alignments=461 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2087 Number of alignments=462 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2091 Number of alignments=463 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWL T0362 125 :QTRHRCALPEGIDRWLEASGVG 2cyeA 110 :EGGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2095 Number of alignments=464 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PAD 2cyeA 47 :WLE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 50 :EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2099 Number of alignments=465 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2cyeA)M1 Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2103 Number of alignments=466 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2cyeA)M1 Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2107 Number of alignments=467 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2cyeA)M1 Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADIFP 2cyeA 47 :WLEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2111 Number of alignments=468 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2cyeA)M1 Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADIFP 2cyeA 47 :WLEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2115 Number of alignments=469 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGV 2cyeA 111 :GGRPAPLPEAIRERIRALEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2119 Number of alignments=470 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 3 :GFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADI 2cyeA 47 :WLEE T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 51 :GHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASG 2cyeA 111 :GGRPAPLPEAIRERIRALE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2123 Number of alignments=471 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADIFP 2cyeA 47 :WLEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2127 Number of alignments=472 # 2cyeA read from 2cyeA/merged-a2m # found chain 2cyeA in template set Warning: unaligning (T0362)Y44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2cyeA)D46 Warning: unaligning (T0362)N47 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2cyeA)D46 Warning: unaligning (T0362)K147 because last residue in template chain is (2cyeA)P132 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2cyeA 2 :EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR T0362 48 :PADIFP 2cyeA 47 :WLEEGH T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2cyeA 53 :FVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE T0362 126 :TRHRCALPEGIDRWLEASGVG 2cyeA 111 :GGRPAPLPEAIRERIRALEGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=2131 Number of alignments=473 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lo9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lo9A expands to /projects/compbio/data/pdb/1lo9.pdb.gz 1lo9A:# T0362 read from 1lo9A/merged-a2m # 1lo9A read from 1lo9A/merged-a2m # adding 1lo9A to template set # found chain 1lo9A in template set T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKS 1lo9A 11 :IEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGI T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1lo9A 57 :VGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 2 number of extra gaps= 0 total=2133 Number of alignments=474 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPAD 1lo9A 7 :MQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWR T0362 57 :KSEVT 1lo9A 49 :QTVVE T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1lo9A 55 :GIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2136 Number of alignments=475 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1lo9A 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo9A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 6 number of extra gaps= 0 total=2142 Number of alignments=476 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1lo9A 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo9A 104 :G T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 6 number of extra gaps= 0 total=2148 Number of alignments=477 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 1lo9A 4 :SITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPP T0362 55 :SRKSEVTPEV 1lo9A 47 :WRQTVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo9A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo9A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2154 Number of alignments=478 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1lo9A 4 :SITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQ T0362 58 :SEVTPEV 1lo9A 50 :TVVERGI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo9A 104 :G T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo9A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2160 Number of alignments=479 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo9A 48 :RQTVVER T0362 63 :EV 1lo9A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo9A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=2167 Number of alignments=480 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1lo9A 50 :TVVER T0362 63 :EV 1lo9A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo9A 104 :G T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 7 number of extra gaps= 0 total=2174 Number of alignments=481 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1lo9A 4 :SITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLP T0362 48 :PADIFPG 1lo9A 48 :RQTVVER T0362 63 :EV 1lo9A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EE 1lo9A 104 :GG T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo9A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2181 Number of alignments=482 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1lo9A 5 :ITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPW T0362 50 :DIFPG 1lo9A 50 :TVVER T0362 63 :EV 1lo9A 55 :GI T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 58 :GTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :E 1lo9A 104 :G T0362 110 :QIAAHALIRHLAI 1lo9A 108 :QLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRW 1lo9A 123 :DGERLRAIEVPADYIEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2188 Number of alignments=483 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo9A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2192 Number of alignments=484 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set Warning: unaligning (T0362)E4 because first residue in template chain is (1lo9A)A2 Warning: unaligning (T0362)E141 because last residue in template chain is (1lo9A)S141 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo9A 3 :RSITMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo9A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGIDRWL 1lo9A 123 :DGERLRAIEVPADYIELC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2196 Number of alignments=485 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo9A 6 :TMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAINAQTRHRCAL 1lo9A 106 :DVQLVMRADEIRVFAMNDGERLRAI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2199 Number of alignments=486 # 1lo9A read from 1lo9A/merged-a2m # found chain 1lo9A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1lo9A 6 :TMQQRIEFGDCNPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQT T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1lo9A 51 :VVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSR T0362 108 :EEQIAAHALIRHLAI 1lo9A 106 :DVQLVMRADEIRVFA T0362 123 :NAQTRHRCALPEGID 1lo9A 123 :DGERLRAIEVPADYI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2203 Number of alignments=487 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y7uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y7uA expands to /projects/compbio/data/pdb/1y7u.pdb.gz 1y7uA:Skipped atom 177, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 179, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 183, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1y7uA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1148, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1150, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1152, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1154, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1219, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1221, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1225, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1227, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1229, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1231, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1233, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1235, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1237, because occupancy 0.500 <= existing 0.500 in 1y7uA Skipped atom 1239, because occupancy 0.500 <= existing 0.500 in 1y7uA # T0362 read from 1y7uA/merged-a2m # 1y7uA read from 1y7uA/merged-a2m # adding 1y7uA to template set # found chain 1y7uA in template set T0362 74 :DFRRPIHTGDALAME 1y7uA 68 :DFLHPVRSSDCVSYE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2204 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFE 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVK T0362 105 :FRCEEQIAAHALIRHLAIN 1y7uA 105 :ISGEKRIAATSFVTFVALS Number of specific fragments extracted= 2 number of extra gaps= 0 total=2206 Number of alignments=488 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1y7uA 12 :ANESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISAS T0362 60 :VTPEVALPIIHCQ 1y7uA 53 :RHSRKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EE 1y7uA 106 :SG T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIA T0362 150 :SI 1y7uA 170 :TF Number of specific fragments extracted= 7 number of extra gaps= 0 total=2213 Number of alignments=489 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1y7uA 13 :NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISAS T0362 60 :VTPEVALPIIHCQ 1y7uA 53 :RHSRKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 109 :E 1y7uA 107 :G T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIA T0362 150 :SI 1y7uA 170 :TF Number of specific fragments extracted= 7 number of extra gaps= 0 total=2220 Number of alignments=490 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1y7uA 13 :NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISAS T0362 60 :VTPEVALPIIHCQ 1y7uA 53 :RHSRKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EE 1y7uA 106 :SG T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIA Number of specific fragments extracted= 6 number of extra gaps= 0 total=2226 Number of alignments=491 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1y7uA 16 :RVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISAS T0362 60 :VTPEVALPIIHCQ 1y7uA 53 :RHSRKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 109 :E 1y7uA 107 :G T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGV 1y7uA 124 :KENNPVPVPRVIPDTEEEKES Number of specific fragments extracted= 6 number of extra gaps= 0 total=2232 Number of alignments=492 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1y7uA 14 :ESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHS T0362 63 :EVALPIIHCQ 1y7uA 56 :RKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIAVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2237 Number of alignments=493 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1y7uA 14 :ESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHS T0362 63 :EVALPIIHCQ 1y7uA 56 :RKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIAVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2242 Number of alignments=494 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1y7uA 13 :NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHS T0362 63 :EVALPIIHCQ 1y7uA 56 :RKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEA 1y7uA 124 :KENNPVPVPRVIPDTEEE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2247 Number of alignments=495 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1y7uA 16 :RVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHS T0362 63 :EVALPIIHCQ 1y7uA 56 :RKECVTASMD T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 110 :QIAAHALIRHLAIN 1y7uA 110 :RIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGV 1y7uA 124 :KENNPVPVPRVIPDTEEEKES Number of specific fragments extracted= 5 number of extra gaps= 0 total=2252 Number of alignments=496 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFH 1y7uA 13 :NESRVFKTSRVFPTDLNDHNTLFGG T0362 44 :YGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 38 :KILSEMDMVASISASRHSRKECVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIAVL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2256 Number of alignments=497 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHES 1y7uA 13 :NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMV T0362 53 :PGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 47 :ASISASRHSRKECVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 1y7uA 124 :KENNPVPVPRVIPDTEEEKESHRIAVL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2260 Number of alignments=498 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEA 1y7uA 124 :KENNPVPVPRVIPDTEEE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2263 Number of alignments=499 # 1y7uA read from 1y7uA/merged-a2m # found chain 1y7uA in template set T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1y7uA 67 :VDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVS T0362 108 :EEQIAAHALIRHLAIN 1y7uA 108 :EKRIAATSFVTFVALS T0362 125 :QTRHRCALPEGIDRWLEA 1y7uA 124 :KENNPVPVPRVIPDTEEE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2266 Number of alignments=500 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s5uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1s5uA/merged-a2m # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAER T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 55 :VAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2269 Number of alignments=501 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAER T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 55 :VAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2272 Number of alignments=502 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAER T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 55 :VAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2275 Number of alignments=503 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAER T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 55 :VAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2278 Number of alignments=504 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 53 :ERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2281 Number of alignments=505 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 53 :ERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2284 Number of alignments=506 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 53 :ERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2287 Number of alignments=507 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1s5uA 7 :RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1s5uA 53 :ERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 102 :TLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2290 Number of alignments=508 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALM T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 52 :AERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2293 Number of alignments=509 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALM T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 52 :AERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2296 Number of alignments=510 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1s5uA 8 :WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALM T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 52 :AERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2299 Number of alignments=511 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 1s5uA 8 :WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALM T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 52 :AERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDR 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2302 Number of alignments=512 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set T0362 13 :VRFGDTDAAGVMH 1s5uA 12 :VYYEDTDAGGVVY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2303 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLES 1s5uA 12 :VYYEDTDAGGVVYHASYVAFYERARTEMLRH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2304 Number of alignments=513 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2307 Number of alignments=514 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2310 Number of alignments=515 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2313 Number of alignments=516 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2316 Number of alignments=517 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 6 :FRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2319 Number of alignments=518 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2322 Number of alignments=519 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2325 Number of alignments=520 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2328 Number of alignments=521 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2331 Number of alignments=522 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2334 Number of alignments=523 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2337 Number of alignments=524 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2340 Number of alignments=525 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 6 :FRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2343 Number of alignments=526 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2346 Number of alignments=527 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2349 Number of alignments=528 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 54 :RVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2352 Number of alignments=529 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2355 Number of alignments=530 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2358 Number of alignments=531 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2361 Number of alignments=532 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 Warning: unaligning (T0362)L140 because last residue in template chain is (1s5uA)F132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2364 Number of alignments=533 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDR 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2367 Number of alignments=534 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2370 Number of alignments=535 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDR 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2373 Number of alignments=536 # 1s5uA read from 1s5uA/merged-a2m # found chain 1s5uA in training set Warning: unaligning (T0362)N5 because first residue in template chain is (1s5uA)T4 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1s5uA 5 :LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQAL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1s5uA 51 :MAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVN T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRW 1s5uA 100 :ENTLLNEAEVLVVCVDPLKMKPRALPKSIVAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2376 Number of alignments=537 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yliA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1yliA/merged-a2m # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)K147 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHC 1yliA 55 :AHGRVVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAINA 1yliA 110 :GERYCVTDAVFTFVAVDN T0362 125 :QTRHRCA 1yliA 131 :SRTIPRE T0362 133 :PEGIDRWLEASGVG 1yliA 138 :NNQELEKALALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2383 Number of alignments=538 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)K147 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHC 1yliA 55 :AHGRVVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAINAQTRHR 1yliA 110 :GERYCVTDAVFTFVAVDNNGRSR T0362 130 :CA 1yliA 136 :RE T0362 133 :PEGIDRWLEASGVG 1yliA 138 :NNQELEKALALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2390 Number of alignments=539 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHC 1yliA 55 :AHGRVVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAINAQTRHR 1yliA 110 :GERYCVTDAVFTFVAVDNNGRSR Number of specific fragments extracted= 5 number of extra gaps= 1 total=2395 Number of alignments=540 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHC 1yliA 55 :AHGRVVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAINAQTRHR 1yliA 110 :GERYCVTDAVFTFVAVDNNGRSR Number of specific fragments extracted= 5 number of extra gaps= 1 total=2400 Number of alignments=541 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDM T0362 36 :SWEESLESYGLN 1yliA 47 :GAILAKEIAHGR T0362 66 :LPIIHC 1yliA 59 :VVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAIN 1yliA 110 :GERYCVTDAVFTFVAVD T0362 125 :QTRHRCALPE 1yliA 127 :NNGRSRTIPR T0362 136 :IDRWLEASGVGKIGS 1yliA 137 :ENNQELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2408 Number of alignments=542 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDM T0362 36 :SWEESLESYGLN 1yliA 47 :GAILAKEIAHGR T0362 66 :LPIIHC 1yliA 59 :VVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAIN 1yliA 110 :GERYCVTDAVFTFVAVD T0362 125 :QTRHRCALPE 1yliA 127 :NNGRSRTIPR T0362 135 :GIDRWLEASGV 1yliA 141 :ELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2416 Number of alignments=543 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDM T0362 36 :SWEESLESYGLN 1yliA 47 :GAILAKEIAHGR T0362 66 :LPIIHC 1yliA 59 :VVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAIN 1yliA 110 :GERYCVTDAVFTFVAVD Number of specific fragments extracted= 6 number of extra gaps= 1 total=2422 Number of alignments=544 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDM T0362 36 :SWEESLESYGLN 1yliA 47 :GAILAKEIAHGR T0362 66 :LPIIHC 1yliA 59 :VVTVAV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1yliA 66 :SMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVW T0362 107 :CEEQIAAHALIRHLAINAQTR 1yliA 110 :GERYCVTDAVFTFVAVDNNGR Number of specific fragments extracted= 6 number of extra gaps= 1 total=2428 Number of alignments=545 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)S143 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 56 :HGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAINAQTRHRCALP 1yliA 113 :YCVTDAVFTFVAVDNNGRSRTIPR T0362 134 :EGIDRWLEA 1yliA 143 :EKALALISE Number of specific fragments extracted= 5 number of extra gaps= 1 total=2433 Number of alignments=546 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)S143 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 56 :HGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAINAQTRHRCALP 1yliA 113 :YCVTDAVFTFVAVDNNGRSRTIPR T0362 134 :EGIDRWLEA 1yliA 143 :EKALALISE Number of specific fragments extracted= 5 number of extra gaps= 1 total=2438 Number of alignments=547 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 56 :HGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAINAQTRHR 1yliA 113 :YCVTDAVFTFVAVDNNGRSR Number of specific fragments extracted= 4 number of extra gaps= 1 total=2442 Number of alignments=548 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 56 :HGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAINAQTR 1yliA 113 :YCVTDAVFTFVAVDNNGR Number of specific fragments extracted= 4 number of extra gaps= 1 total=2446 Number of alignments=549 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFE 1yliA 68 :NFIKPISVGDVVCCYGQCLKVGRSSIKIKVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2447 Number of alignments=550 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 6 :WLLL 1yliA 16 :VLLL T0362 12 :VVRFGDTDAAGVMHF 1yliA 22 :LAMPSDTNANGDIFG T0362 36 :SWE 1yliA 37 :GWI T0362 46 :LNPADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 40 :MSQMDMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV Number of specific fragments extracted= 4 number of extra gaps= 1 total=2451 Number of alignments=551 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAK T0362 60 :VTPEVALPIIHCQ 1yliA 53 :EIAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1yliA 127 :NNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 6 number of extra gaps= 1 total=2457 Number of alignments=552 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAK T0362 60 :VTPEVALPIIHCQ 1yliA 53 :EIAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 103 :K T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1yliA 127 :NNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2464 Number of alignments=553 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 61 :TPEVALPIIHCQ 1yliA 54 :IAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 107 :E T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1yliA 127 :NNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2471 Number of alignments=554 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1yliA)R11 Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 6 :WLLL 1yliA 16 :VLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHCQ 1yliA 55 :AHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2479 Number of alignments=555 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAK T0362 60 :VTPEVALPIIHCQ 1yliA 53 :EIAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGV 1yliA 127 :NNGRSRTIPRENNQELEKALA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2485 Number of alignments=556 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAK T0362 60 :VTPEVALPIIHCQ 1yliA 53 :EIAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 103 :K T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGV 1yliA 127 :NNGRSRTIPRENNQELEKALA Number of specific fragments extracted= 7 number of extra gaps= 1 total=2492 Number of alignments=557 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 61 :TPEVALPIIHCQ 1yliA 54 :IAHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 107 :E T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVGKIG 1yliA 127 :NNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2499 Number of alignments=558 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 8 :LL 1yliA 18 :LL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI T0362 62 :PEVALPIIHCQ 1yliA 55 :AHGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2507 Number of alignments=559 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G149 because last residue in template chain is (1yliA)Q152 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGVG 1yliA 127 :NNGRSRTIPRENNQELEKALAL T0362 147 :KI 1yliA 150 :SE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2514 Number of alignments=560 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G149 because last residue in template chain is (1yliA)Q152 T0362 4 :ENWLLL 1yliA 14 :KGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGV 1yliA 127 :NNGRSRTIPRENNQELEKALA T0362 146 :GKI 1yliA 149 :ISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2521 Number of alignments=561 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)K147 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 107 :E T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :E 1yliA 140 :Q T0362 136 :IDRWLEASGVG 1yliA 141 :ELEKALALISE Number of specific fragments extracted= 9 number of extra gaps= 1 total=2530 Number of alignments=562 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1yliA)R11 Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 6 :WLLL 1yliA 16 :VLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2538 Number of alignments=563 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEA 1yliA 127 :NNGRSRTIPRENNQELEK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2544 Number of alignments=564 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 3 :PENWLLL 1yliA 13 :SKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKK T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEAS 1yliA 127 :NNGRSRTIPRENNQELEKA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2550 Number of alignments=565 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 109 :E 1yliA 107 :E T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEASGV 1yliA 127 :NNGRSRTIPRENNQELEKALA Number of specific fragments extracted= 7 number of extra gaps= 1 total=2557 Number of alignments=566 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 8 :LL 1yliA 18 :LL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIA T0362 63 :EVALPIIHCQ 1yliA 56 :HGRVVTVAVE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 67 :MNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EE 1yliA 106 :SE T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 8 number of extra gaps= 1 total=2565 Number of alignments=567 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G149 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMG T0362 45 :GLNPADI 1yliA 47 :GAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKI 1yliA 111 :ERYCVTDAVFTFVAVDNNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 5 number of extra gaps= 1 total=2570 Number of alignments=568 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G149 because last residue in template chain is (1yliA)Q152 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMG T0362 45 :GLNPADI 1yliA 47 :GAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKI 1yliA 111 :ERYCVTDAVFTFVAVDNNGRSRTIPRENNQELEKALALISE Number of specific fragments extracted= 5 number of extra gaps= 1 total=2575 Number of alignments=569 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)K147 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAIN 1yliA 111 :ERYCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWL 1yliA 140 :QELEKAL T0362 142 :ASGVG 1yliA 147 :ALISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2582 Number of alignments=570 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)G146 because last residue in template chain is (1yliA)Q152 T0362 9 :L 1yliA 19 :L T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 6 number of extra gaps= 1 total=2588 Number of alignments=571 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 2 :NPENWLLL 1yliA 12 :QSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMG T0362 45 :GLNPADI 1yliA 47 :GAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAIN 1yliA 111 :ERYCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLEA 1yliA 127 :NNGRSRTIPRENNQELEK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2594 Number of alignments=572 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 4 :ENWLLL 1yliA 14 :KGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMG T0362 45 :GLNPADI 1yliA 47 :GAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAIN 1yliA 111 :ERYCVTDAVFTFVAVD T0362 125 :QTRHRCALPEGIDRWLE 1yliA 127 :NNGRSRTIPRENNQELE Number of specific fragments extracted= 6 number of extra gaps= 1 total=2600 Number of alignments=573 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 Warning: unaligning (T0362)K147 because last residue in template chain is (1yliA)Q152 T0362 1 :MNPENWLLL 1yliA 11 :RQSKGVLLL T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 108 :EEQIAAHALIRHLAIN 1yliA 111 :ERYCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEA 1yliA 140 :QELEKALAL T0362 144 :GVG 1yliA 149 :ISE Number of specific fragments extracted= 7 number of extra gaps= 1 total=2607 Number of alignments=574 # 1yliA read from 1yliA/merged-a2m # found chain 1yliA in template set Warning: unaligning (T0362)R10 because of BadResidue code BAD_PEPTIDE in next template residue (1yliA)T21 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE at template residue (1yliA)T21 T0362 9 :L 1yliA 19 :L T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1yliA 22 :LAMPSDTNANGDIFGGWIMSQMDMGGAILAKE T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1yliA 54 :IAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV T0362 110 :QIAAHALIRHLAIN 1yliA 113 :YCVTDAVFTFVAVD T0362 125 :QTRHRCALP 1yliA 127 :NNGRSRTIP T0362 134 :EGIDRWLEASGV 1yliA 140 :QELEKALALISE Number of specific fragments extracted= 6 number of extra gaps= 1 total=2613 Number of alignments=575 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1njkA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1njkA expands to /projects/compbio/data/pdb/1njk.pdb.gz 1njkA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 1njkA/merged-a2m # 1njkA read from 1njkA/merged-a2m # adding 1njkA to template set # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSF T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 42 :QWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2616 Number of alignments=576 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NP 1njkA 40 :SF T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 42 :QWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2620 Number of alignments=577 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSF T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 42 :QWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2623 Number of alignments=578 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NP 1njkA 40 :SF T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 42 :QWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2627 Number of alignments=579 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PAD 1njkA 41 :FQW T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 44 :MTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2631 Number of alignments=580 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PAD 1njkA 41 :FQW T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 44 :MTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2635 Number of alignments=581 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PAD 1njkA 41 :FQW T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 44 :MTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLE 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2639 Number of alignments=582 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PAD 1njkA 41 :FQW T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 1njkA 44 :MTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVIT T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLE 1njkA 94 :PEGQVVADALITFVCIDLKTQKALALEGELREKLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2643 Number of alignments=583 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNS 1njkA 49 :IAFVVVNININYRRPAVLSDLLTITSQLQQLNGKS T0362 99 :FQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLE 1njkA 86 :LSQVITLEPEGQVVADALITFVCIDLKTQKALALEGELREKLE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2645 Number of alignments=584 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVH 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILS T0362 103 :FEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLE 1njkA 90 :ITLEPEGQVVADALITFVCIDLKTQKALALEGELREKLE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2647 Number of alignments=585 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 5 :IKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2651 Number of alignments=586 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2655 Number of alignments=587 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2659 Number of alignments=588 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 45 :G 1njkA 37 :N T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2664 Number of alignments=589 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2668 Number of alignments=590 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 1njkA 2 :QTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDS T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2672 Number of alignments=591 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2676 Number of alignments=592 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 45 :G 1njkA 37 :N T0362 48 :PADI 1njkA 41 :FQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2681 Number of alignments=593 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2685 Number of alignments=594 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2689 Number of alignments=595 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2693 Number of alignments=596 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 48 :PADIFPG 1njkA 41 :FQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2697 Number of alignments=597 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 3 :TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2701 Number of alignments=598 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1njkA 2 :QTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSD T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2705 Number of alignments=599 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 47 :NPADIFPG 1njkA 40 :SFQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2709 Number of alignments=600 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 48 :PADIFPG 1njkA 41 :FQWMTAH T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 48 :NIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEAS 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2713 Number of alignments=601 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1njkA 4 :QIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 46 :AHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2716 Number of alignments=602 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1njkA 4 :QIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQW T0362 51 :I 1njkA 44 :M T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2720 Number of alignments=603 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 45 :GLNPADI 1njkA 38 :SDSFQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2724 Number of alignments=604 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 47 :NPADI 1njkA 40 :SFQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2728 Number of alignments=605 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1njkA 2 :QTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 46 :AHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2731 Number of alignments=606 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 1njkA 2 :QTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQW T0362 51 :I 1njkA 44 :M T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2735 Number of alignments=607 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLEN T0362 45 :GLNPADI 1njkA 38 :SDSFQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2739 Number of alignments=608 # 1njkA read from 1njkA/merged-a2m # found chain 1njkA in template set Warning: unaligning (T0362)W6 because first residue in template chain is (1njkA)H0 Warning: unaligning (T0362)V145 because last residue in template chain is (1njkA)K132 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1njkA 1 :MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE T0362 47 :NPADI 1njkA 40 :SFQWM T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1njkA 45 :TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 1njkA 95 :EGQVVADALITFVCIDLKTQKALALEGELREKLEQMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2743 Number of alignments=609 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o0iA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1o0iA expands to /projects/compbio/data/pdb/1o0i.pdb.gz 1o0iA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 1o0iA/merged-a2m # 1o0iA read from 1o0iA/merged-a2m # adding 1o0iA to template set # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 30 :AFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2747 Number of alignments=610 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 31 :FGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2751 Number of alignments=611 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2755 Number of alignments=612 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALI 1o0iA 124 :KLCCVSRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2759 Number of alignments=613 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 30 :AFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GL 1o0iA 77 :GK T0362 65 :ALPIIHCQADFRRPIHTG 1o0iA 79 :TVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2764 Number of alignments=614 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 1 :MN 1o0iA 2 :LW T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GL 1o0iA 77 :GK T0362 65 :ALPIIHCQADFRRPIHTG 1o0iA 79 :TVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2770 Number of alignments=615 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GL 1o0iA 77 :GK T0362 65 :ALPIIHCQADFRRPIHTG 1o0iA 79 :TVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAIN 1o0iA 124 :KLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2775 Number of alignments=616 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GL 1o0iA 77 :GK T0362 65 :ALPIIHCQADFRRPIHTG 1o0iA 79 :TVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALI 1o0iA 124 :KLCCVSRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2780 Number of alignments=617 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCH 1o0iA 17 :SNSAVSHLGIEISAFGEDWIEATMPVDHRTMQPF T0362 36 :SWEESLESYGLNP 1o0iA 60 :ALAETIGSLAGSL T0362 59 :EVTPEVALPIIHCQADFRRPIH 1o0iA 73 :CLEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIR T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2785 Number of alignments=618 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 1 :M 1o0iA 6 :T T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 1o0iA 18 :NSAVSHLGIEISAFGEDWIEATMPVDHRTMQPFG T0362 36 :SWEESLESYGLNP 1o0iA 60 :ALAETIGSLAGSL T0362 59 :EVTPEVALPIIHCQADFRRPIH 1o0iA 73 :CLEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIR T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2791 Number of alignments=619 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 69 :IHCQADFRRPIH 1o0iA 83 :LDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIR T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 3 number of extra gaps= 0 total=2794 Number of alignments=620 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 62 :PEVALPIIHCQADFRRPIH 1o0iA 76 :EGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIR T0362 108 :EEQIAAHALI 1o0iA 122 :ENKLCCVSRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2797 Number of alignments=621 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 103 :FEFRCEEQIAAHALIRHLAI 1o0iA 7 :FTLENLNQLCSNSAVSHLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2798 Number of alignments=622 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 71 :CQADFRRPIHTGD 1o0iA 85 :INANHLRPVRSGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2799 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2803 Number of alignments=623 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2807 Number of alignments=624 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2811 Number of alignments=625 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 1o0iA 74 :LEEGKTVVGLDINANHLRPVRS T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1o0iA 96 :GKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2815 Number of alignments=626 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2819 Number of alignments=627 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 36 :IEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2823 Number of alignments=628 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 1o0iA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2827 Number of alignments=629 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 1o0iA 74 :LEEGKTVVGLDINANHLRPVRS T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1o0iA 96 :GKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2831 Number of alignments=630 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLR 1o0iA 3 :WKKTFTLE T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 1o0iA 40 :MPVDHRTMQPFGVLHGGVSVALAETIG T0362 45 :GLNPADIFPG 1o0iA 67 :SLAGSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2837 Number of alignments=631 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWE 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGS T0362 40 :SL 1o0iA 68 :LA T0362 48 :PADIFPG 1o0iA 70 :GSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2843 Number of alignments=632 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAG T0362 43 :SYG 1o0iA 71 :SLC T0362 52 :FPG 1o0iA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2849 Number of alignments=633 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 52 :FPG 1o0iA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2854 Number of alignments=634 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESW 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIG T0362 45 :GLNPADIFPG 1o0iA 67 :SLAGSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2859 Number of alignments=635 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWE 1o0iA 35 :WIEATMPVDHRTMQPFGVLHGGVSVALAETIGS T0362 40 :SL 1o0iA 68 :LA T0362 48 :PADIFPG 1o0iA 70 :GSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2865 Number of alignments=636 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESL 1o0iA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAG T0362 43 :SYG 1o0iA 71 :SLC T0362 52 :FPG 1o0iA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2871 Number of alignments=637 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 52 :FPG 1o0iA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 1o0iA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2876 Number of alignments=638 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLR 1o0iA 3 :WKKTFTLE T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHE 1o0iA 40 :MPVDHRTMQPFGVLHGGVSVALAET T0362 44 :YGLNPADIF 1o0iA 65 :IGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2882 Number of alignments=639 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLR 1o0iA 3 :WKKTFTLE T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSR 1o0iA 27 :EISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIG T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTG 1o0iA 71 :SLCLEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2887 Number of alignments=640 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLL 1o0iA 3 :WKKTFT T0362 14 :RFGD 1o0iA 30 :AFGE T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 47 :MQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 6 number of extra gaps= 0 total=2893 Number of alignments=641 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1o0iA)L2 Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIH 1o0iA 74 :LEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2897 Number of alignments=642 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (1o0iA)L138 T0362 30 :FRWCHESWEESLESYGLNPADIFP 1o0iA 50 :FGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2901 Number of alignments=643 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 37 :WEESLESYGLNPADI 1o0iA 57 :VSVALAETIGSLAGS T0362 58 :SEVTPEVALPIIHCQADFRRPIHTG 1o0iA 72 :LCLEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAIN 1o0iA 122 :ENKLCCVSRLTLSVIN Number of specific fragments extracted= 4 number of extra gaps= 0 total=2905 Number of alignments=644 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 36 :SWEESLESYGLNPADIF 1o0iA 57 :VSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1o0iA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1o0iA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 1o0iA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2909 Number of alignments=645 # 1o0iA read from 1o0iA/merged-a2m # found chain 1o0iA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1o0iA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIH 1o0iA 74 :LEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 1o0iA 95 :SGKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 1o0iA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2913 Number of alignments=646 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aliA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2aliA/merged-a2m # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGI T0362 50 :D 2aliA 48 :D T0362 53 :P 2aliA 51 :G T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 52 :AAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQ 2aliA 98 :LEDP T0362 111 :IAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 104 :TYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 6 number of extra gaps= 1 total=2919 Number of alignments=647 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGI T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 52 :AAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQ 2aliA 98 :LEDP T0362 111 :IAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 104 :TYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2923 Number of alignments=648 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGI T0362 50 :D 2aliA 48 :D T0362 53 :P 2aliA 51 :G T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 52 :AAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQ 2aliA 98 :LEDP T0362 111 :IAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 104 :TYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 6 number of extra gaps= 1 total=2929 Number of alignments=649 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGI T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 52 :AAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQ 2aliA 98 :LEDP T0362 111 :IAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 104 :TYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2933 Number of alignments=650 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 11 :HIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2936 Number of alignments=651 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 11 :HIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2939 Number of alignments=652 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2942 Number of alignments=653 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 9 :TAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2945 Number of alignments=654 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 100 :DPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2948 Number of alignments=655 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 100 :DPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2951 Number of alignments=656 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 14 :VRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 100 :DPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2954 Number of alignments=657 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E59 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 12 :IPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLH T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 100 :DPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2957 Number of alignments=658 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 14 :VRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID Number of specific fragments extracted= 1 number of extra gaps= 0 total=2958 Number of alignments=659 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 13 :PVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DIFPGS 2aliA 51 :GAAEGP T0362 64 :VALPIIH 2aliA 57 :VVLQSLH T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVH 2aliA 64 :TYLKPVVHPATVVVELYAGRLGTSSLVLE Number of specific fragments extracted= 4 number of extra gaps= 1 total=2962 Number of alignments=660 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2966 Number of alignments=661 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2970 Number of alignments=662 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2973 Number of alignments=663 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)N5 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :W 2aliA 6 :L T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 8 :HTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2977 Number of alignments=664 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2981 Number of alignments=665 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2985 Number of alignments=666 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2988 Number of alignments=667 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2991 Number of alignments=668 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 5 number of extra gaps= 1 total=2996 Number of alignments=669 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 109 :E 2aliA 100 :D T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3001 Number of alignments=670 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3005 Number of alignments=671 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3009 Number of alignments=672 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EE 2aliA 99 :ED T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3014 Number of alignments=673 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 109 :E 2aliA 100 :D T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 103 :GTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3019 Number of alignments=674 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3023 Number of alignments=675 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)I51 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)F52 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 53 :PG 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3027 Number of alignments=676 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3030 Number of alignments=677 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3034 Number of alignments=678 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3037 Number of alignments=679 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3040 Number of alignments=680 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3043 Number of alignments=681 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)A49 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 Warning: unaligning (T0362)E141 because last residue in template chain is (2aliA)A134 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 7 :LHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 50 :DI 2aliA 51 :GA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 53 :AEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3047 Number of alignments=682 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)E4 because first residue in template chain is (2aliA)Q5 Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3050 Number of alignments=683 # 2aliA read from 2aliA/merged-a2m # found chain 2aliA in template set Warning: unaligning (T0362)P48 because of BadResidue code BAD_PEPTIDE in next template residue (2aliA)E50 Warning: unaligning (T0362)V60 because of BadResidue code BAD_PEPTIDE at template residue (2aliA)E50 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2aliA 6 :LLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGID T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2aliA 51 :GAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHT T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWL 2aliA 101 :PQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3053 Number of alignments=684 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z54A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1z54A/merged-a2m # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 52 :VFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL T0362 146 :GKIGSI 1z54A 127 :SVLHLK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3057 Number of alignments=685 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 52 :VFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL T0362 149 :GSI 1z54A 130 :HLK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3061 Number of alignments=686 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 52 :VFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3064 Number of alignments=687 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGS 1z54A 3 :SVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 52 :VFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3067 Number of alignments=688 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 1 :MN 1z54A 1 :ME T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1z54A 3 :SVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1z54A 50 :RGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLC T0362 123 :NA 1z54A 110 :QV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL T0362 147 :KIGSI 1z54A 127 :SVLHL Number of specific fragments extracted= 6 number of extra gaps= 0 total=3073 Number of alignments=689 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1z54A 3 :SVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1z54A 50 :RGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLC T0362 123 :NA 1z54A 110 :QV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL T0362 150 :SI 1z54A 130 :HL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3078 Number of alignments=690 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1z54A 5 :TRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1z54A 50 :RGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLC T0362 123 :NA 1z54A 110 :QV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3082 Number of alignments=691 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 1z54A 4 :VTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEA T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1z54A 50 :RGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLC T0362 123 :NA 1z54A 110 :QV T0362 126 :TRHRCALPEGIDRWLEA 1z54A 112 :GERAARIPEDIYRALSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3086 Number of alignments=692 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G144 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLE 1z54A 111 :VGERAARIPEDIYRALS T0362 142 :AS 1z54A 130 :HL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3091 Number of alignments=693 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G144 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLE 1z54A 111 :VGERAARIPEDIYRALS T0362 142 :AS 1z54A 130 :HL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3096 Number of alignments=694 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 5 :TRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWL 1z54A 111 :VGERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3099 Number of alignments=695 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 5 :TRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWL 1z54A 111 :VGERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3102 Number of alignments=696 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 6 :RIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLC Number of specific fragments extracted= 2 number of extra gaps= 0 total=3104 Number of alignments=697 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 6 :RIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTR 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQVGERA T0362 130 :CALPEGIDRW 1z54A 116 :ARIPEDIYRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3107 Number of alignments=698 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3111 Number of alignments=699 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3115 Number of alignments=700 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3119 Number of alignments=701 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3123 Number of alignments=702 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWL 1z54A 111 :VGERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3126 Number of alignments=703 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLE 1z54A 111 :VGERAARIPEDIYRALS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3129 Number of alignments=704 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3132 Number of alignments=705 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3135 Number of alignments=706 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3139 Number of alignments=707 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3143 Number of alignments=708 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3147 Number of alignments=709 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3151 Number of alignments=710 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 4 :VTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWL 1z54A 111 :VGERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3154 Number of alignments=711 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 3 :SVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWL 1z54A 111 :VGERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3157 Number of alignments=712 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 1 :M 1z54A 1 :M T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQ T0362 125 :QTRHRCALPEGIDRWLEASGV 1z54A 111 :VGERAARIPEDIYRALSVLHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3161 Number of alignments=713 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEAR T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 51 :GVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3164 Number of alignments=714 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3167 Number of alignments=715 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3170 Number of alignments=716 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3173 Number of alignments=717 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 Warning: unaligning (T0362)G146 because last residue in template chain is (1z54A)K132 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASGV 1z54A 112 :GERAARIPEDIYRALSVLHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3176 Number of alignments=718 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 4 :VTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3179 Number of alignments=719 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 4 :VTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWL 1z54A 112 :GERAARIPEDIYRAL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3182 Number of alignments=720 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASG 1z54A 112 :GERAARIPEDIYRALSVLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3185 Number of alignments=721 # 1z54A read from 1z54A/merged-a2m # found chain 1z54A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (1z54A)M1 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 1z54A 2 :ESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1z54A 48 :EARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQV T0362 126 :TRHRCALPEGIDRWLEASG 1z54A 112 :GERAARIPEDIYRALSVLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3188 Number of alignments=722 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bi0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bi0A expands to /projects/compbio/data/pdb/2bi0.pdb.gz 2bi0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2bi0A/merged-a2m # 2bi0A read from 2bi0A/merged-a2m # adding 2bi0A to template set # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)L7 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)V145 because last residue in template chain is (2bi0A)F337 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 8 :L 2bi0A 15 :F T0362 9 :LRRVV 2bi0A 57 :CAAVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 60 :VTP 2bi0A 81 :STL T0362 64 :VALPII 2bi0A 84 :ATQRVK T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNSF 2bi0A 106 :GDTLYTRTEVVGLRANSP T0362 100 :QVHFEFRCEEQIAAHAL 2bi0A 132 :LAGLRMTTIDRTDRLVL T0362 118 :RHLAINAQTRHRCALPEGIDRWLEASG 2bi0A 310 :RSLVYAVSDSASEPDRQVLDWRFSALQ Number of specific fragments extracted= 10 number of extra gaps= 5 total=3198 Number of alignments=723 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)I68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)R129 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)C130 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPE 2bi0A 8 :IRVG T0362 5 :NWL 2bi0A 48 :LRL T0362 8 :LLRRVV 2bi0A 56 :LCAAVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 64 :VAL 2bi0A 87 :RVK T0362 69 :IH 2bi0A 92 :LF T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNSF 2bi0A 106 :GDTLYTRTEVVGLRANSP T0362 100 :QVHFEFRCEE 2bi0A 132 :LAGLRMTTID T0362 110 :QIAA 2bi0A 145 :RLVL T0362 115 :ALIRHLAINAQTRH 2bi0A 152 :RCAMLPASPDWKPG T0362 132 :LPEGIDRWLEASGV 2bi0A 169 :GDDLSRIGADAPAP T0362 146 :GKIGSI 2bi0A 218 :DLVSGA Number of specific fragments extracted= 13 number of extra gaps= 5 total=3211 Number of alignments=724 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 11 :RVV 2bi0A 59 :AVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 60 :VTP 2bi0A 81 :STL T0362 64 :VALPII 2bi0A 84 :ATQRVK T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNSF 2bi0A 106 :GDTLYTRTEVVGLRANSP T0362 100 :QVHFEFRCEEQ 2bi0A 132 :LAGLRMTTIDR Number of specific fragments extracted= 7 number of extra gaps= 3 total=3218 Number of alignments=725 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)R14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)I68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 11 :RVV 2bi0A 59 :AVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 64 :VAL 2bi0A 87 :RVK T0362 69 :IH 2bi0A 92 :LF T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNSF 2bi0A 106 :GDTLYTRTEVVGLRANSP T0362 100 :QVHFEFRCEE 2bi0A 132 :LAGLRMTTID Number of specific fragments extracted= 7 number of extra gaps= 3 total=3225 Number of alignments=726 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)L7 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)C71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 8 :L 2bi0A 15 :F T0362 9 :LRRVV 2bi0A 28 :PGVTL T0362 14 :R 2bi0A 61 :T T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 62 :PEVALPIIH 2bi0A 81 :STLATQRVK T0362 72 :QADFRRPI 2bi0A 96 :GLRFHRFP T0362 82 :GDALAMELRPERLNPN 2bi0A 106 :GDTLYTRTEVVGLRAN T0362 98 :S 2bi0A 131 :G T0362 100 :QVHFEFRCE 2bi0A 132 :LAGLRMTTI T0362 109 :EQIAA 2bi0A 144 :DRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGID 2bi0A 169 :GDDL T0362 138 :RWLEASGVGKIGSI 2bi0A 294 :HIESAQAHADGGVL Number of specific fragments extracted= 14 number of extra gaps= 6 total=3239 Number of alignments=727 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)L7 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 8 :L 2bi0A 15 :F T0362 9 :LRRVV 2bi0A 28 :PGVTL T0362 14 :R 2bi0A 61 :T T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 62 :PEVALPIIH 2bi0A 81 :STLATQRVK T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 100 :QVHFEFRCEEQ 2bi0A 132 :LAGLRMTTIDR T0362 111 :IAA 2bi0A 146 :LVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGI 2bi0A 169 :GDD T0362 137 :D 2bi0A 246 :R T0362 139 :WLEASGVGKIGSI 2bi0A 295 :IESAQAHADGGVL Number of specific fragments extracted= 14 number of extra gaps= 5 total=3253 Number of alignments=728 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)C71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 11 :RVVR 2bi0A 58 :AAVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 62 :PEVALPIIH 2bi0A 81 :STLATQRVK T0362 72 :QADFRRPI 2bi0A 96 :GLRFHRFP T0362 82 :GDALAMELRPERLNPN 2bi0A 106 :GDTLYTRTEVVGLRAN T0362 98 :S 2bi0A 131 :G T0362 100 :QVHFEFRCEEQ 2bi0A 132 :LAGLRMTTIDR Number of specific fragments extracted= 7 number of extra gaps= 3 total=3260 Number of alignments=729 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)F15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 12 :VVR 2bi0A 59 :AVT T0362 16 :GDTDAAGVMHFHQLFRW 2bi0A 64 :PGPLAHPGLVCDVAIGQ T0362 62 :PEVALPIIH 2bi0A 81 :STLATQRVK T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 100 :QVHFEFRCEEQ 2bi0A 132 :LAGLRMTTIDR Number of specific fragments extracted= 6 number of extra gaps= 2 total=3266 Number of alignments=730 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)N5 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)L66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)I117 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPE 2bi0A 9 :RVGG T0362 7 :L 2bi0A 15 :F T0362 8 :LLRRVV 2bi0A 27 :APGVTL T0362 18 :TDAAGVMHFHQLFRWCHESWEESLESY 2bi0A 33 :SLGLAAAHQSIVGNRLRLALDSDLCAA T0362 45 :GLNPADIFPGSRKSEVT 2bi0A 70 :PGLVCDVAIGQSTLATQ T0362 63 :EVA 2bi0A 87 :RVK T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERLNPNSFQVH 2bi0A 106 :GDTLYTRTEVVGLRANSPKPG T0362 103 :FEFRCEEQIAAH 2bi0A 154 :AMLPASPDWKPG T0362 118 :RHLAINAQTRHRCALPEGIDRWLEASGVGKIGSI 2bi0A 169 :GDDLSRIGADAPAPAADPTAHWDGAVFRKRVPGP Number of specific fragments extracted= 10 number of extra gaps= 4 total=3276 Number of alignments=731 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)N5 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)W37 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)E38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)L66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 1 :M 2bi0A 8 :I T0362 2 :NPE 2bi0A 10 :VGG T0362 7 :L 2bi0A 15 :F T0362 8 :LLRRVV 2bi0A 27 :APGVTL T0362 18 :TDAAGVMHFHQLFRWCHE 2bi0A 33 :SLGLAAAHQSIVGNRLRL T0362 36 :S 2bi0A 61 :T T0362 39 :ESLESYGLNPADIFPGSRKSEVT 2bi0A 64 :PGPLAHPGLVCDVAIGQSTLATQ T0362 63 :EVA 2bi0A 87 :RVK T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERLNPNSFQVHFE 2bi0A 106 :GDTLYTRTEVVGLRANSPKPGRA T0362 111 :IAAHALIRHLAIN 2bi0A 129 :PTGLAGLRMTTID T0362 124 :AQTRH 2bi0A 175 :IGADA T0362 129 :RCALPEGIDRWLEASGVGKIGS 2bi0A 192 :GAVFRKRVPGPHFDAGIAGAVL Number of specific fragments extracted= 13 number of extra gaps= 4 total=3289 Number of alignments=732 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 74 :DFRRPI 2bi0A 98 :RFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=3291 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 71 :CQADFRRPI 2bi0A 95 :RGLRFHRFP T0362 82 :GDALAMELRPERLNPNSF 2bi0A 106 :GDTLYTRTEVVGLRANSP Number of specific fragments extracted= 2 number of extra gaps= 1 total=3293 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPE 2bi0A 262 :TRLLPNLATVLDWESCDHTAPVHEGDTLYSELHIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=3294 Number of alignments=733 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPER 2bi0A 264 :LLPNLATVLDWESCDHTAPVHEGDTLYSELHIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=3295 Number of alignments=734 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)G54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPENWL 2bi0A 18 :LSKGQVF T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2bi0A 25 :DWAPGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVT T0362 56 :RKSEVTPEVALP 2bi0A 64 :PGPLAHPGLVCD T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 99 :FQVHFEFRCEEQIAA 2bi0A 134 :GLRMTTIDRTDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGIDRWLEASGVGKIG 2bi0A 169 :GDDLSRIGADAPAPAA T0362 150 :SI 2bi0A 186 :PT Number of specific fragments extracted= 9 number of extra gaps= 4 total=3304 Number of alignments=735 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)G54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPENWL 2bi0A 18 :LSKGQVF T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2bi0A 25 :DWAPGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVT T0362 56 :RKSEVTPEVAL 2bi0A 64 :PGPLAHPGLVC T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 99 :FQVHFEFRCEEQIAA 2bi0A 134 :GLRMTTIDRTDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGIDRWLEASGVGKIG 2bi0A 169 :GDDLSRIGADAPAPAA Number of specific fragments extracted= 8 number of extra gaps= 4 total=3312 Number of alignments=736 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)V60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)T61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)I68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 15 :FGDTDAAGV 2bi0A 15 :FDDLSKGQV T0362 35 :ESWEESLESYGLNPADIFP 2bi0A 35 :GLAAAHQSIVGNRLRLALD T0362 62 :PEVALP 2bi0A 64 :PGPLAH T0362 69 :IHCQ 2bi0A 92 :LFYR T0362 73 :ADFRRPI 2bi0A 97 :LRFHRFP T0362 82 :GDALAMELRPERL 2bi0A 106 :GDTLYTRTEVVGL T0362 95 :NPN 2bi0A 126 :GRA T0362 98 :SFQVHFEFRC 2bi0A 132 :LAGLRMTTID T0362 108 :EEQIAA 2bi0A 143 :TDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGIDRWLEASGVGKIG 2bi0A 169 :GDDLSRIGADAPAPAA Number of specific fragments extracted= 12 number of extra gaps= 6 total=3324 Number of alignments=737 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)G54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)I68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 15 :FGDTDAAGV 2bi0A 15 :FDDLSKGQV T0362 34 :HESWEESLESYGLNPADIFP 2bi0A 34 :LGLAAAHQSIVGNRLRLALD T0362 56 :RKS 2bi0A 64 :PGP T0362 65 :ALP 2bi0A 67 :LAH T0362 69 :IHCQ 2bi0A 92 :LFYR T0362 73 :ADFRRPI 2bi0A 97 :LRFHRFP T0362 82 :GDALAMELRPERL 2bi0A 106 :GDTLYTRTEVVGL T0362 95 :NPN 2bi0A 124 :KPG T0362 98 :SFQVHFEFRC 2bi0A 132 :LAGLRMTTID T0362 108 :EEQIAA 2bi0A 143 :TDRLVL T0362 116 :LIRHLAINAQTRHR 2bi0A 151 :YRCAMLPASPDWKP T0362 130 :CALP 2bi0A 179 :APAP T0362 134 :EGIDR 2bi0A 193 :AVFRK Number of specific fragments extracted= 14 number of extra gaps= 5 total=3338 Number of alignments=738 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 73 :ADFRRPI 2bi0A 97 :LRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS Number of specific fragments extracted= 2 number of extra gaps= 1 total=3340 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 72 :QADFRRPI 2bi0A 96 :GLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 99 :FQVHFEFRCEEQIAA 2bi0A 134 :GLRMTTIDRTDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGIDRWLEASGVGK 2bi0A 169 :GDDLSRIGADAPAP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3345 Number of alignments=739 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 24 :MHFHQLFRWCHESWEE 2bi0A 248 :VYGGHTIGLALAQATR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 2bi0A 264 :LLPNLATVLDWESCDHTAPVHEGDTLYSELHIESA T0362 95 :NPNSFQVHFEFRC 2bi0A 303 :DGGVLGLRSLVYA T0362 108 :EE 2bi0A 318 :DS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=3350 Number of alignments=740 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 27 :HQ 2bi0A 251 :GH T0362 32 :WCHESWEESLE 2bi0A 253 :TIGLALAQATR T0362 60 :VTPEVALP 2bi0A 264 :LLPNLATV T0362 69 :IHCQ 2bi0A 272 :LDWE T0362 73 :ADFRRPIHTGDALAMELRPERLN 2bi0A 277 :CDHTAPVHEGDTLYSELHIESAQ T0362 96 :PNSFQVHFEFRC 2bi0A 304 :GGVLGLRSLVYA T0362 108 :EE 2bi0A 320 :AS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=3358 Number of alignments=741 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)L8 because first residue in template chain is (2bi0A)I8 Warning: unaligning (T0362)V13 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)G54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)I69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)H70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 9 :LRRV 2bi0A 9 :RVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 19 :DAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2bi0A 27 :APGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVT T0362 56 :RKSEVTPEVAL 2bi0A 64 :PGPLAHPGLVC T0362 67 :PI 2bi0A 88 :VK T0362 71 :CQ 2bi0A 92 :LF T0362 73 :ADFRRPI 2bi0A 97 :LRFHRFP T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2bi0A 106 :GDTLYTRTEVVGLRANSPKPGRAPTG T0362 108 :EE 2bi0A 133 :AG T0362 110 :QIAAHALIRHLAIN 2bi0A 288 :TLYSELHIESAQAH T0362 125 :QTRHRCALPEGIDRWLEASGVGKIGSI 2bi0A 302 :ADGGVLGLRSLVYAVSDSASEPDRQVL Number of specific fragments extracted= 11 number of extra gaps= 4 total=3369 Number of alignments=742 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)L8 because first residue in template chain is (2bi0A)I8 Warning: unaligning (T0362)V13 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)G54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)S55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 T0362 9 :LRRV 2bi0A 9 :RVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 19 :DAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2bi0A 27 :APGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVT T0362 56 :RKSEVTPEVAL 2bi0A 64 :PGPLAHPGLVC T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 107 :C 2bi0A 131 :G T0362 108 :EE 2bi0A 133 :AG T0362 128 :HRCALPEGIDRWLEASGVGK 2bi0A 305 :GVLGLRSLVYAVSDSASEPD T0362 148 :IGSI 2bi0A 327 :VLDW Number of specific fragments extracted= 10 number of extra gaps= 4 total=3379 Number of alignments=743 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)V13 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)L66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)I122 because last residue in template chain is (2bi0A)F337 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 22 :GVMHFHQLF 2bi0A 65 :GPLAHPGLV T0362 33 :CHESWEESLESYG 2bi0A 74 :CDVAIGQSTLATQ T0362 63 :EVA 2bi0A 87 :RVK T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERL 2bi0A 106 :GDTLYTRTEVVGL T0362 95 :NPN 2bi0A 126 :GRA T0362 98 :SFQVHFEFRC 2bi0A 132 :LAGLRMTTID T0362 108 :EE 2bi0A 143 :TD T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=3390 Number of alignments=744 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)W6 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)I122 because last residue in template chain is (2bi0A)F337 T0362 1 :MNPEN 2bi0A 8 :IRVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 19 :DAAGVMHFHQLFR 2bi0A 185 :DPTAHWDGAVFRK T0362 37 :WEESLESYGLNPADIFPGSRKSEVTP 2bi0A 223 :APELARLTLNIAATHHDWRVSGRRLV T0362 63 :EVALPIIHCQ 2bi0A 266 :PNLATVLDWE T0362 73 :ADFRRPIHTGDALAMELRPERLN 2bi0A 277 :CDHTAPVHEGDTLYSELHIESAQ T0362 96 :PNSFQVHFEFRC 2bi0A 304 :GGVLGLRSLVYA T0362 108 :EE 2bi0A 318 :DS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 9 number of extra gaps= 1 total=3399 Number of alignments=745 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPER 2bi0A 265 :LPNLATVLDWESCDHTAPVHEGDTLYSELHIES Number of specific fragments extracted= 1 number of extra gaps= 0 total=3400 Number of alignments=746 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 72 :QADFRRPI 2bi0A 96 :GLRFHRFP T0362 82 :GDALAMELRPERLNPNS 2bi0A 106 :GDTLYTRTEVVGLRANS T0362 99 :FQVHFEFRCEEQIAA 2bi0A 134 :GLRMTTIDRTDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EGIDRWLEASGVGKIG 2bi0A 169 :GDDLSRIGADAPAPAA Number of specific fragments extracted= 5 number of extra gaps= 3 total=3405 Number of alignments=747 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 23 :VMHFHQLFRWCHESWEESL 2bi0A 247 :LVYGGHTIGLALAQATRLL T0362 45 :G 2bi0A 266 :P T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERL 2bi0A 267 :NLATVLDWESCDHTAPVHEGDTLYSELHIESA T0362 95 :NPNSFQVHFEFRC 2bi0A 303 :DGGVLGLRSLVYA T0362 108 :EE 2bi0A 318 :DS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=3411 Number of alignments=748 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 23 :VMHFHQLFRW 2bi0A 247 :LVYGGHTIGL T0362 36 :SWEESLESY 2bi0A 257 :ALAQATRLL T0362 63 :EVALPIIHCQ 2bi0A 266 :PNLATVLDWE T0362 73 :ADFRRPIHTGDALAMELRPERLN 2bi0A 277 :CDHTAPVHEGDTLYSELHIESAQ T0362 96 :PNSFQVHFEFRC 2bi0A 304 :GGVLGLRSLVYA T0362 108 :EE 2bi0A 318 :DS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=3418 Number of alignments=749 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)L8 because first residue in template chain is (2bi0A)I8 Warning: unaligning (T0362)V13 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)H70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)C71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)F99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)Q100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 T0362 9 :LRRV 2bi0A 9 :RVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 20 :AAGVMHFHQLFRWCHESWEESLESYGLNPADIF 2bi0A 19 :SKGQVFDWAPGVTLSLGLAAAHQSIVGNRLRLA T0362 60 :VTPEVALPII 2bi0A 52 :LDSDLCAAVT T0362 72 :QADFRRPIHTGDALAMELRP 2bi0A 64 :PGPLAHPGLVCDVAIGQSTL T0362 93 :RLNPNS 2bi0A 84 :ATQRVK T0362 101 :VHFEFRC 2bi0A 92 :LFYRGLR T0362 108 :EEQIAA 2bi0A 106 :GDTLYT T0362 116 :LIRHLAINAQTRHRCALPEGIDRWLEASGVGKIGSI 2bi0A 112 :RTEVVGLRANSPKPGRAPTGLAGLRMTTIDRTDRLV Number of specific fragments extracted= 9 number of extra gaps= 3 total=3427 Number of alignments=750 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)L8 because first residue in template chain is (2bi0A)I8 Warning: unaligning (T0362)V13 because of BadResidue code BAD_PEPTIDE in next template residue (2bi0A)Y14 Warning: unaligning (T0362)R14 because of BadResidue code BAD_PEPTIDE at template residue (2bi0A)Y14 Warning: unaligning (T0362)H70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)M63 Warning: unaligning (T0362)C71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)F99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)Q100 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 T0362 9 :LRRV 2bi0A 9 :RVGG T0362 15 :FGDT 2bi0A 15 :FDDL T0362 20 :AAGVMHFHQLFRWCHESWEESLESYGLNPADIF 2bi0A 19 :SKGQVFDWAPGVTLSLGLAAAHQSIVGNRLRLA T0362 60 :VTPEVALPII 2bi0A 52 :LDSDLCAAVT T0362 72 :QADFRRPIHTGDALAMELRP 2bi0A 64 :PGPLAHPGLVCDVAIGQSTL T0362 93 :RLNPNS 2bi0A 84 :ATQRVK T0362 101 :VHFEFRC 2bi0A 92 :LFYRGLR T0362 108 :EEQIAA 2bi0A 106 :GDTLYT T0362 116 :LIRHLAINAQTRHRCALPEGIDRWLEASGVGKIGSI 2bi0A 112 :RTEVVGLRANSPKPGRAPTGLAGLRMTTIDRTDRLV Number of specific fragments extracted= 9 number of extra gaps= 3 total=3436 Number of alignments=751 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)A20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)M63 Warning: unaligning (T0362)L66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 Warning: unaligning (T0362)A131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)V167 Warning: unaligning (T0362)L132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)V167 Warning: unaligning (T0362)P133 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)P168 T0362 2 :NPENWLLLRRVVRFG 2bi0A 19 :SKGQVFDWAPGVTLS T0362 21 :AGVMHFHQL 2bi0A 64 :PGPLAHPGL T0362 32 :WCHESWEE 2bi0A 73 :VCDVAIGQ T0362 49 :ADI 2bi0A 81 :STL T0362 60 :VTPEVA 2bi0A 84 :ATQRVK T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERL 2bi0A 106 :GDTLYTRTEVVGL T0362 98 :SFQVHFEFRC 2bi0A 132 :LAGLRMTTID T0362 108 :EEQIAA 2bi0A 143 :TDRLVL T0362 116 :LIRHLAINAQTRHRC 2bi0A 151 :YRCAMLPASPDWKPG T0362 134 :EG 2bi0A 169 :GD Number of specific fragments extracted= 11 number of extra gaps= 5 total=3447 Number of alignments=752 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set Warning: unaligning (T0362)L66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)N91 Warning: unaligning (T0362)P67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)N91 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2bi0A)V105 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2bi0A)V105 Warning: unaligning (T0362)H114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bi0A)F150 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bi0A)F150 T0362 2 :NPENWLL 2bi0A 19 :SKGQVFD T0362 13 :VRFG 2bi0A 30 :VTLS T0362 34 :HESWEESLESYGLNPADIFP 2bi0A 34 :LGLAAAHQSIVGNRLRLALD T0362 60 :VTPEVA 2bi0A 84 :ATQRVK T0362 68 :IIHCQADFRRPI 2bi0A 92 :LFYRGLRFHRFP T0362 82 :GDALAMELRPERL 2bi0A 106 :GDTLYTRTEVVGL T0362 95 :NPNSFQVHFEFRC 2bi0A 127 :RAPTGLAGLRMTT T0362 108 :EEQIAA 2bi0A 143 :TDRLVL T0362 116 :LIRHLAINAQTRHR 2bi0A 151 :YRCAMLPASPDWKP T0362 134 :EGIDRW 2bi0A 193 :AVFRKR T0362 144 :GVGKI 2bi0A 199 :VPGPH Number of specific fragments extracted= 11 number of extra gaps= 3 total=3458 Number of alignments=753 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 44 :YGLNPADIFP 2bi0A 254 :IGLALAQATR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPE 2bi0A 264 :LLPNLATVLDWESCDHTAPVHEGDTLYSELHIE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3460 Number of alignments=754 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 50 :DIF 2bi0A 260 :QAT T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPER 2bi0A 263 :RLLPNLATVLDWESCDHTAPVHEGDTLYSELHIES Number of specific fragments extracted= 2 number of extra gaps= 0 total=3462 Number of alignments=755 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 24 :MHFHQLFRWCHESWEE 2bi0A 248 :VYGGHTIGLALAQATR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 2bi0A 264 :LLPNLATVLDWESCDHTAPVHEGDTLYSELHIESA T0362 95 :NPNSFQVHFEFRC 2bi0A 303 :DGGVLGLRSLVYA T0362 108 :EEQIAAHALIRHLA 2bi0A 323 :PDRQVLDWRFSALQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=3466 Number of alignments=756 # 2bi0A read from 2bi0A/merged-a2m # found chain 2bi0A in template set T0362 26 :FHQL 2bi0A 250 :GGHT T0362 33 :CHESWEESLE 2bi0A 254 :IGLALAQATR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNP 2bi0A 264 :LLPNLATVLDWESCDHTAPVHEGDTLYSELHIESAQA T0362 97 :NSFQVHFEFRC 2bi0A 305 :GVLGLRSLVYA T0362 108 :EE 2bi0A 320 :AS T0362 110 :QIAAHALIRHLA 2bi0A 325 :RQVLDWRFSALQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=3472 Number of alignments=757 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b3nA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b3nA expands to /projects/compbio/data/pdb/2b3n.pdb.gz 2b3nA:Skipped atom 125, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 126, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 130, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 131, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 133, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 134, because occupancy 0.330 <= existing 0.330 in 2b3nA Skipped atom 146, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 150, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 152, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 154, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 156, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 158, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 269, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 273, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 275, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 277, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 279, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 342, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 344, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 346, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 348, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 350, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 365, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 369, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 371, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 375, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 377, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 454, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 456, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 458, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 460, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 462, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 735, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 827, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 831, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 835, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 863, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 865, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 867, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 869, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1017, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1245, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1249, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1251, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1253, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1262, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1264, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1266, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1268, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1270, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1272, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2b3nA Skipped atom 1278, because occupancy 0.500 <= existing 0.500 in 2b3nA # T0362 read from 2b3nA/merged-a2m # 2b3nA read from 2b3nA/merged-a2m # adding 2b3nA to template set # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 1 :MNPENWLLLR 2b3nA 63 :LNPVHFDEDF T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 2b3nA 74 :SKTRFGGRVVHGMLTTSLVSAAVARLP T0362 63 :EV 2b3nA 101 :GT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3477 Number of alignments=758 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 1 :MNPE 2b3nA 31 :KFEG T0362 5 :NW 2b3nA 64 :NP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESW 2b3nA 70 :EDFASKTRFGGRVVHGMLTTSLVSAAVARLP T0362 63 :EV 2b3nA 101 :GT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3483 Number of alignments=759 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 2b3nA 74 :SKTRFGGRVVHGMLTTSLVSAAVARLP T0362 63 :EV 2b3nA 101 :GT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHA 2b3nA 145 :GDKVVAEG Number of specific fragments extracted= 4 number of extra gaps= 1 total=3487 Number of alignments=760 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 2b3nA 74 :SKTRFGGRVVHGMLTTSLVSAAVARLP T0362 63 :EV 2b3nA 101 :GT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHAL 2b3nA 145 :GDKVVAEGV Number of specific fragments extracted= 4 number of extra gaps= 1 total=3491 Number of alignments=761 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENW 2b3nA 63 :LNPVHF T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCH 2b3nA 70 :EDFASKTRFGGRVVHGMLTTSLVSAAVA T0362 36 :SWE 2b3nA 98 :RLP T0362 62 :PE 2b3nA 101 :GT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=3497 Number of alignments=762 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 6 :WLL 2b3nA 65 :PVH T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCH 2b3nA 72 :FASKTRFGGRVVHGMLTTSLVSAAVA T0362 36 :SWE 2b3nA 98 :RLP T0362 63 :E 2b3nA 101 :G T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=3503 Number of alignments=763 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 108 :QSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALI 2b3nA 145 :GDKVVAEGVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=3505 Number of alignments=764 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHA 2b3nA 145 :GDKVVAEG Number of specific fragments extracted= 2 number of extra gaps= 1 total=3507 Number of alignments=765 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2b3nA)E5 Warning: unaligning (T0362)P3 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)V6 Warning: unaligning (T0362)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b3nA)K7 Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (2b3nA)K27 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)K27 Warning: unaligning (T0362)R138 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)W139 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 5 :NWLLLRRVVRFGDTDAAG 2b3nA 8 :MMSLLEEMKGIYSKKGGK T0362 25 :HFHQLFRWCHESWEE 2b3nA 28 :PFEKFEGELKEGYRF T0362 41 :LESYGLNPADIFPGSRKSE 2b3nA 43 :EYEKKLCEIDVAMFGLISG T0362 60 :VTPEVAL 2b3nA 68 :FDEDFAS T0362 72 :QADFRRPIHTGD 2b3nA 75 :KTRFGGRVVHGM T0362 84 :ALAMELRPERLNP 2b3nA 90 :SLVSAAVARLPGT T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGID 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 140 :LEASGVGKIGSI 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 8 number of extra gaps= 2 total=3515 Number of alignments=766 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)M1 because of BadResidue code BAD_PEPTIDE in next template residue (2b3nA)V6 Warning: unaligning (T0362)N2 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)V6 Warning: unaligning (T0362)P3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b3nA)K7 Warning: unaligning (T0362)V23 because of BadResidue code BAD_PEPTIDE in next template residue (2b3nA)K27 Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE at template residue (2b3nA)K27 Warning: unaligning (T0362)R138 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)W139 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 4 :ENW 2b3nA 8 :MMS T0362 8 :LLRRVVRFGDTDAAG 2b3nA 11 :LLEEMKGIYSKKGGK T0362 25 :HFHQLFRWCHESWEE 2b3nA 28 :PFEKFEGELKEGYRF T0362 41 :LESYGLNPADIFPGSRKSE 2b3nA 43 :EYEKKLCEIDVAMFGLISG T0362 60 :VTPEVAL 2b3nA 68 :FDEDFAS T0362 72 :QADFRRPIHTG 2b3nA 75 :KTRFGGRVVHG T0362 83 :DALAMELRPERLNP 2b3nA 89 :TSLVSAAVARLPGT T0362 98 :SFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGID 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 140 :LEASGVGKIGSI 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 9 number of extra gaps= 2 total=3524 Number of alignments=767 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 109 :SFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC Number of specific fragments extracted= 1 number of extra gaps= 1 total=3525 Number of alignments=768 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 106 :LEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :E 2b3nA 145 :G Number of specific fragments extracted= 2 number of extra gaps= 1 total=3527 Number of alignments=769 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 112 :YTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=3529 Number of alignments=770 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 111 :RYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIR 2b3nA 145 :GDKVVAEGVVK Number of specific fragments extracted= 2 number of extra gaps= 1 total=3531 Number of alignments=771 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 36 :LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSR 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3535 Number of alignments=772 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 36 :LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSR 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3539 Number of alignments=773 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVRFGDTDAAGV 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGL T0362 24 :MHFHQLFRWCHESWE 2b3nA 83 :VHGMLTTSLVSAAVA T0362 60 :VTPEVA 2b3nA 98 :RLPGTV T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 104 :VLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3544 Number of alignments=774 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVRFG 2b3nA 37 :KEGYRFEYEKKLCEI T0362 29 :LFRWCH 2b3nA 52 :DVAMFG T0362 35 :ESWEESLE 2b3nA 90 :SLVSAAVA T0362 60 :VTPE 2b3nA 98 :RLPG T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 102 :TVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3550 Number of alignments=775 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 36 :LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSR 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3554 Number of alignments=776 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSR 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRH 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 4 number of extra gaps= 1 total=3558 Number of alignments=777 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 2 :NPENWLLLRRVVRFGDTDAAGV 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGL T0362 24 :MHFHQLFRWCHESWE 2b3nA 83 :VHGMLTTSLVSAAVA T0362 60 :VTPEV 2b3nA 98 :RLPGT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3563 Number of alignments=778 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENWLLLRRVVRFG 2b3nA 36 :LKEGYRFEYEKKLCEI T0362 29 :LFRWCH 2b3nA 52 :DVAMFG T0362 35 :ESWEESLE 2b3nA 90 :SLVSAAVA T0362 60 :VTPE 2b3nA 98 :RLPG T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 102 :TVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3569 Number of alignments=779 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 36 :LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSRKSE 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAVARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3573 Number of alignments=780 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 39 :GYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPG 2b3nA 76 :TRFGGRVVHGMLTTSLVSA T0362 57 :KSEVT 2b3nA 95 :AVARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3578 Number of alignments=781 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVV 2b3nA 37 :KEGYRFEYEKKL T0362 16 :GDTDA 2b3nA 61 :GDLNP T0362 22 :GVMHFHQLFRWCHESW 2b3nA 81 :RVVHGMLTTSLVSAAV T0362 42 :ESY 2b3nA 97 :ARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3584 Number of alignments=782 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVV 2b3nA 37 :KEGYRFEYEKKL T0362 22 :GVMHFHQLFRWCHESW 2b3nA 81 :RVVHGMLTTSLVSAAV T0362 42 :ES 2b3nA 97 :AR T0362 46 :L 2b3nA 99 :L T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3590 Number of alignments=783 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 36 :LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPGSRKSE 2b3nA 76 :TRFGGRVVHGMLTTSLVSAAVARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3594 Number of alignments=784 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDE T0362 36 :SWEESLESYGLNPADIFPG 2b3nA 76 :TRFGGRVVHGMLTTSLVSA T0362 57 :KSEVT 2b3nA 95 :AVARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRH 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 5 number of extra gaps= 1 total=3599 Number of alignments=785 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 2 :NPENWLLLRRVV 2b3nA 37 :KEGYRFEYEKKL T0362 16 :GDTDA 2b3nA 61 :GDLNP T0362 22 :GVMHFHQLFRWCHESW 2b3nA 81 :RVVHGMLTTSLVSAAV T0362 42 :ESY 2b3nA 97 :ARL T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=3605 Number of alignments=786 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENWLLLRRVV 2b3nA 36 :LKEGYRFEYEKKL T0362 22 :GVMHFHQLFRWCHESW 2b3nA 81 :RVVHGMLTTSLVSAAV T0362 42 :ES 2b3nA 97 :AR T0362 46 :L 2b3nA 99 :L T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 100 :PGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 6 number of extra gaps= 1 total=3611 Number of alignments=787 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMH 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGLIS T0362 26 :FHQLFRWCHESWEESLESYGLNPADI 2b3nA 72 :FASKTRFGGRVVHGMLTTSLVSAAVA T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 98 :RLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3615 Number of alignments=788 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVRFGDTDAAGVM 2b3nA 37 :KEGYRFEYEKKLCEIDVAMFGLI T0362 25 :H 2b3nA 67 :H T0362 26 :FHQLFRWCHESWEESLESYGLNPADI 2b3nA 72 :FASKTRFGGRVVHGMLTTSLVSAAVA T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 98 :RLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3620 Number of alignments=789 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)N123 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVR 2b3nA 37 :KEGYRFEYEKKLC T0362 23 :VMHFHQLFRWCHESW 2b3nA 82 :VVHGMLTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3624 Number of alignments=790 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 Warning: unaligning (T0362)I122 because last residue in template chain is (2b3nA)W159 T0362 2 :NPENWLLLRRVVR 2b3nA 37 :KEGYRFEYEKKLC T0362 27 :HQLFRWCHE 2b3nA 50 :EIDVAMFGL T0362 36 :SWEESLESYG 2b3nA 87 :LTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3629 Number of alignments=791 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 103 :VVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRH 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=3631 Number of alignments=792 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 98 :RLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRH 2b3nA 145 :GDKVVAEGVVKV Number of specific fragments extracted= 2 number of extra gaps= 1 total=3633 Number of alignments=793 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 104 :VLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHL 2b3nA 145 :GDKVVAEGVVKVL Number of specific fragments extracted= 2 number of extra gaps= 1 total=3635 Number of alignments=794 # 2b3nA read from 2b3nA/merged-a2m # found chain 2b3nA in template set Warning: unaligning (T0362)R106 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2b3nA)T144 Warning: unaligning (T0362)C107 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2b3nA)T144 T0362 1 :MNPENWLLLRRVVR 2b3nA 36 :LKEGYRFEYEKKLC T0362 27 :HQLFRWCHE 2b3nA 50 :EIDVAMFGL T0362 36 :SWEESLESYG 2b3nA 87 :LTTSLVSAAV T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEF 2b3nA 97 :ARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC T0362 108 :EEQIAAHALIRHLA 2b3nA 145 :GDKVVAEGVVKVLI Number of specific fragments extracted= 5 number of extra gaps= 1 total=3640 Number of alignments=795 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q4uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1q4uA/merged-a2m # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1q4uA 40 :EMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATV T0362 59 :EVTP 1q4uA 82 :AVVH T0362 63 :EVALPIIHCQADFRRPIH 1q4uA 88 :GMMAVGQSNHTSFFRPVK T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 106 :EGHVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAINA 1q4uA 135 :RLCAVSSMSIAVRPR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3645 Number of alignments=796 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1q4uA 41 :MTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATV T0362 59 :EVTP 1q4uA 82 :AVVH T0362 63 :EVALPIIHCQADFRRPIH 1q4uA 88 :GMMAVGQSNHTSFFRPVK T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 106 :EGHVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAINA 1q4uA 135 :RLCAVSSMSIAVRPR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3650 Number of alignments=797 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 49 :ADIFPGSRKSEVTP 1q4uA 72 :AEMLATEATVAVVH T0362 63 :EVALPIIHCQADFRRPIH 1q4uA 88 :GMMAVGQSNHTSFFRPVK T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 106 :EGHVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAINA 1q4uA 135 :RLCAVSSMSIAVRPR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3654 Number of alignments=798 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1q4uA 44 :ERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATV T0362 59 :EVTP 1q4uA 82 :AVVH T0362 63 :EVALPIIHCQADFRRPIH 1q4uA 88 :GMMAVGQSNHTSFFRPVK T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 106 :EGHVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALI 1q4uA 135 :RLCAVSSM Number of specific fragments extracted= 5 number of extra gaps= 0 total=3659 Number of alignments=799 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1q4uA 40 :EMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV T0362 62 :P 1q4uA 85 :H T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAINA 1q4uA 135 :RLCAVSSMSIAVRPR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3664 Number of alignments=800 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1q4uA 42 :TPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV T0362 62 :P 1q4uA 85 :H T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAINA 1q4uA 135 :RLCAVSSMSIAVRPR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3669 Number of alignments=801 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1q4uA 42 :TPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV T0362 62 :P 1q4uA 85 :H T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRHLAIN 1q4uA 135 :RLCAVSSMSIAVRP Number of specific fragments extracted= 5 number of extra gaps= 0 total=3674 Number of alignments=802 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1q4uA 43 :PERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV T0362 62 :P 1q4uA 85 :H T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRDDA T0362 110 :QIAAHALIRH 1q4uA 135 :RLCAVSSMSI Number of specific fragments extracted= 5 number of extra gaps= 0 total=3679 Number of alignments=803 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVM 1q4uA 27 :EQTLDGTVGFVIDEMTPERATASV T0362 25 :HFHQLFRWCHESWEESLESYGLNPADIFP 1q4uA 55 :TLRQRWGLVHGGAYCALAEMLATEATVAV T0362 54 :GSRKSEVT 1q4uA 86 :EKGMMAVG T0362 69 :IHCQADFRRPIHTG 1q4uA 94 :QSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLR T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3685 Number of alignments=804 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQL 1q4uA 11 :TGGNLPDVASHYPVAYEQTLDGTVGFVID T0362 34 :HESWEESLESYGLNPADIFPGSRKS 1q4uA 45 :RATASVEVTDTLRQRWGLVHGGAYC T0362 59 :E 1q4uA 83 :V T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLR T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3691 Number of alignments=805 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 69 :IHCQADFRRPIHTG 1q4uA 94 :QSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLR T0362 108 :EEQIAAHALI 1q4uA 133 :AGRLCAVSSM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3694 Number of alignments=806 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 69 :IHCQADFRRPIHTG 1q4uA 94 :QSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLR T0362 108 :EEQIAAHA 1q4uA 133 :AGRLCAVS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3697 Number of alignments=807 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 75 :FRRPIHTGDALAMELR 1q4uA 100 :FFRPVKEGHVRAEAVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3698 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3698 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :M 1q4uA 41 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 42 :TPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 60 :VTPEVALPIIHCQ 1q4uA 84 :VHEKGMMAVGQSN T0362 73 :ADFRRPIHTGD 1q4uA 98 :TSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3704 Number of alignments=808 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 1 :MNP 1q4uA 41 :MTP T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 44 :ERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 60 :VTPEVALPIIHCQ 1q4uA 84 :VHEKGMMAVGQSN T0362 73 :ADFRRPIHTGD 1q4uA 98 :TSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3710 Number of alignments=809 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 46 :ATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :I 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3716 Number of alignments=810 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1q4uA)T11 Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1q4uA 46 :ATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVA T0362 44 :Y 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3722 Number of alignments=811 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 21 :AGVMHFHQLFRWCHESWEESLESY 1q4uA 60 :WGLVHGGAYCALAEMLATEATVAV T0362 60 :VTPEVALPIIHCQ 1q4uA 84 :VHEKGMMAVGQSN T0362 73 :ADFRRPIHTGD 1q4uA 98 :TSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAA 1q4uA 133 :AGRLCA Number of specific fragments extracted= 5 number of extra gaps= 0 total=3727 Number of alignments=812 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 21 :AGVMHFHQLFRWCHESWEESLESY 1q4uA 60 :WGLVHGGAYCALAEMLATEATVAV T0362 60 :VTPEVALPIIHCQ 1q4uA 84 :VHEKGMMAVGQSN T0362 73 :ADFRRPIHTGD 1q4uA 98 :TSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIR 1q4uA 133 :AGRLCAVSSMS Number of specific fragments extracted= 5 number of extra gaps= 0 total=3732 Number of alignments=813 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 44 :ERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :I 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=3737 Number of alignments=814 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 1q4uA 43 :PERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVA T0362 44 :Y 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3743 Number of alignments=815 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 8 :LLRRVVRFGDT 1q4uA 19 :ASHYPVAYEQT T0362 19 :DAAGVMHFHQLFRWCHESWEESLES 1q4uA 58 :QRWGLVHGGAYCALAEMLATEATVA T0362 44 :YG 1q4uA 85 :HE T0362 63 :EVALPIIHCQ 1q4uA 87 :KGMMAVGQSN T0362 73 :ADFRRPIHTG 1q4uA 98 :TSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3750 Number of alignments=816 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 5 :NWLLLRRVVRFGDT 1q4uA 16 :PDVASHYPVAYEQT T0362 19 :DAAGVMHFHQLFRWCHESWEESLES 1q4uA 58 :QRWGLVHGGAYCALAEMLATEATVA T0362 50 :DIFPG 1q4uA 83 :VVHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3756 Number of alignments=817 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 46 :ATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :IFPG 1q4uA 84 :VHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3762 Number of alignments=818 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 46 :ATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :IFPG 1q4uA 84 :VHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3768 Number of alignments=819 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 21 :AGVMHFHQLFRWCHESWEESLES 1q4uA 60 :WGLVHGGAYCALAEMLATEATVA T0362 44 :YG 1q4uA 85 :HE T0362 63 :EVALPIIHCQ 1q4uA 87 :KGMMAVGQSN T0362 73 :ADFRRPIHTG 1q4uA 98 :TSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAA 1q4uA 133 :AGRLCA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3774 Number of alignments=820 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 20 :AAGVMHFHQLFRWCHESWEESLES 1q4uA 59 :RWGLVHGGAYCALAEMLATEATVA T0362 50 :DIFPG 1q4uA 83 :VVHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALI 1q4uA 133 :AGRLCAVSSM Number of specific fragments extracted= 5 number of extra gaps= 0 total=3779 Number of alignments=821 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 45 :RATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :IFPG 1q4uA 84 :VHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=3784 Number of alignments=822 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1q4uA 45 :RATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAV T0362 51 :IFPG 1q4uA 84 :VHEK T0362 63 :EVALPIIHCQADFRRPIHTG 1q4uA 88 :GMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3790 Number of alignments=823 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1q4uA 42 :TPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3794 Number of alignments=824 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)Q125 because last residue in template chain is (1q4uA)R150 T0362 6 :WLLLRRVVRFGDT 1q4uA 17 :DVASHYPVAYEQT T0362 20 :AAGVMHFHQLFRWCHESWEESLESYG 1q4uA 59 :RWGLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLAINA 1q4uA 133 :AGRLCAVSSMSIAVRPR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3799 Number of alignments=825 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 5 :NWL 1q4uA 20 :SHY T0362 8 :LLRRVVRFGDT 1q4uA 45 :RATASVEVTDT T0362 20 :AAGVMHFHQLFRWCHESWEESLESYG 1q4uA 59 :RWGLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3806 Number of alignments=826 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set Warning: unaligning (T0362)A131 because last residue in template chain is (1q4uA)R150 T0362 2 :NPENW 1q4uA 25 :AYEQT T0362 8 :LLRRVVRFGDT 1q4uA 45 :RATASVEVTDT T0362 19 :DAAGVMHFHQLFRWCHESWEESLESY 1q4uA 58 :QRWGLVHGGAYCALAEMLATEATVAV T0362 51 :I 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHT 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKE T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1q4uA 107 :GHVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 8 number of extra gaps= 0 total=3814 Number of alignments=827 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 22 :GVMHFHQLFRWCHESWEESLESYG 1q4uA 61 :GLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAA 1q4uA 133 :AGRLCA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3818 Number of alignments=828 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 22 :GVMHFHQLFRWCHESWEESLESYG 1q4uA 61 :GLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTGD 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEGH T0362 85 :LAMELRPERLNPNSFQVHFEFRC 1q4uA 109 :VRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHAL 1q4uA 133 :AGRLCAVSS Number of specific fragments extracted= 4 number of extra gaps= 0 total=3822 Number of alignments=829 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 22 :GVMHFHQLFRWCHESWEESLESYG 1q4uA 61 :GLVHGGAYCALAEMLATEATVAVV T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKEG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1q4uA 108 :HVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHL 1q4uA 133 :AGRLCAVSSMSIA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3826 Number of alignments=830 # 1q4uA read from 1q4uA/merged-a2m # found chain 1q4uA in training set T0362 24 :MHFHQLFRWCHESWEESLESY 1q4uA 63 :VHGGAYCALAEMLATEATVAV T0362 51 :I 1q4uA 84 :V T0362 60 :VTPEVALPIIHCQADFRRPIHT 1q4uA 85 :HEKGMMAVGQSNHTSFFRPVKE T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1q4uA 107 :GHVRAEAVRIHAGSTTWFWDVSLRD T0362 108 :EEQIAAHALIRHLA 1q4uA 133 :AGRLCAVSSMSIAV T0362 128 :HRC 1q4uA 147 :RPR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3832 Number of alignments=831 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2av9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2av9A/merged-a2m # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)S150 because last residue in template chain is (2av9A)A146 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGG T0362 49 :ADIFP 2av9A 54 :LDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLE T0362 109 :EQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 108 :REACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ T0362 149 :G 2av9A 145 :S Number of specific fragments extracted= 6 number of extra gaps= 1 total=3838 Number of alignments=832 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)S150 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGG T0362 49 :ADIFP 2av9A 54 :LDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLE T0362 109 :EQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 108 :REACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ T0362 149 :G 2av9A 145 :S Number of specific fragments extracted= 6 number of extra gaps= 1 total=3844 Number of alignments=833 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGG T0362 49 :ADIFP 2av9A 54 :LDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLE T0362 109 :EQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 2av9A 108 :REACAAGRFVHVFVERRSSRPVAIPQELRDALAA Number of specific fragments extracted= 5 number of extra gaps= 1 total=3849 Number of alignments=834 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGG T0362 49 :ADIFP 2av9A 54 :LDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLE T0362 109 :EQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 2av9A 108 :REACAAGRFVHVFVERRSSRPVAIPQELRDALAA Number of specific fragments extracted= 5 number of extra gaps= 1 total=3854 Number of alignments=835 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGL T0362 58 :SEVTPEVALPIIHCQADFRRPI 2av9A 55 :DIQGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALF T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 106 :GQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3858 Number of alignments=836 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGL T0362 58 :SEVTPEVALPIIHCQADFRRPI 2av9A 55 :DIQGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALF T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 106 :GQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3862 Number of alignments=837 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2av9A 15 :FQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGL T0362 58 :SEVTPEVALPIIHCQADFRRPI 2av9A 55 :DIQGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALF T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLE 2av9A 106 :GQREACAAGRFVHVFVERRSSRPVAIPQELRDALA Number of specific fragments extracted= 4 number of extra gaps= 1 total=3866 Number of alignments=838 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLN 2av9A 14 :HFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGL T0362 58 :SEVTPEVALPIIHCQADFRRPI 2av9A 55 :DIQGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALF T0362 107 :CEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 2av9A 106 :GQREACAAGRFVHVFVERRSSRPVAIPQELRDALAA Number of specific fragments extracted= 4 number of extra gaps= 1 total=3870 Number of alignments=839 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERR Number of specific fragments extracted= 2 number of extra gaps= 1 total=3872 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIR 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGR T0362 119 :HLAINAQTRHRCALPE 2av9A 118 :HVFVERRSSRPVAIPQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=3875 Number of alignments=840 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNP 2av9A 52 :GGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3880 Number of alignments=841 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3885 Number of alignments=842 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3890 Number of alignments=843 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNP 2av9A 52 :GGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3895 Number of alignments=844 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNP 2av9A 52 :GGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ Number of specific fragments extracted= 5 number of extra gaps= 1 total=3900 Number of alignments=845 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ Number of specific fragments extracted= 5 number of extra gaps= 1 total=3905 Number of alignments=846 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3910 Number of alignments=847 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNP 2av9A 52 :GGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3915 Number of alignments=848 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3920 Number of alignments=849 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3925 Number of alignments=850 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2av9A)P5 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3930 Number of alignments=851 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2av9A)P5 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNPADI 2av9A 52 :GGLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3935 Number of alignments=852 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ Number of specific fragments extracted= 5 number of extra gaps= 1 total=3940 Number of alignments=853 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQ Number of specific fragments extracted= 5 number of extra gaps= 1 total=3945 Number of alignments=854 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 48 :PADIFPG 2av9A 53 :GLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3950 Number of alignments=855 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIE T0362 44 :YGLNPADI 2av9A 52 :GGLDIQGG T0362 63 :EVALPIIHCQADFRRPI 2av9A 60 :EVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3955 Number of alignments=856 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3959 Number of alignments=857 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 2av9A 9 :REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3963 Number of alignments=858 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3967 Number of alignments=859 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)N5 because first residue in template chain is (2av9A)P5 Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 13 :LHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3972 Number of alignments=860 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2av9A 8 :LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQG T0362 62 :PEVALPIIHCQADFRRPI 2av9A 59 :GEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3976 Number of alignments=861 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 2av9A 11 :QYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGV 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3980 Number of alignments=862 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPA 2av9A 10 :EQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFL T0362 108 :EEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 107 :QREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3984 Number of alignments=863 # 2av9A read from 2av9A/merged-a2m # found chain 2av9A in template set Warning: unaligning (T0362)H80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2av9A)F78 Warning: unaligning (T0362)T81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2av9A)F78 Warning: unaligning (T0362)K147 because last residue in template chain is (2av9A)A146 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2av9A 12 :YLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERG T0362 46 :LNP 2av9A 54 :LDI T0362 60 :VTPEVALPIIHCQADFRRPI 2av9A 57 :QGGEVIGLVVSSSCDYFAPV T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2av9A 79 :PQRIEMGLRVARLGNSSVQYELALFLEG T0362 110 :QIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVG 2av9A 109 :EACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSS Number of specific fragments extracted= 5 number of extra gaps= 1 total=3989 Number of alignments=864 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cwzA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2cwzA expands to /projects/compbio/data/pdb/2cwz.pdb.gz 2cwzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2cwzA/merged-a2m # 2cwzA read from 2cwzA/merged-a2m # adding 2cwzA to template set # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLF 2cwzA 8 :YEAVFETVVTPEMTVRFEELGPVH T0362 31 :RWCHESWEESLESYGLNPADIFPGSRKSEVTPEVAL 2cwzA 33 :VYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEA T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 69 :RHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQTRHR 2cwzA 105 :GDLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3995 Number of alignments=865 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 7 :LLLRRVVRFGDT 2cwzA 10 :AVFETVVTPEMT T0362 21 :AGVMHFHQL 2cwzA 22 :VRFEELGPV T0362 57 :KSEVTPEVALPI 2cwzA 43 :MELAGRKIILPF T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 64 :SYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQTRHR 2cwzA 105 :GDLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4002 Number of alignments=866 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 64 :SYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQ 2cwzA 105 :GDLIGVGRTEQVILPKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4004 Number of alignments=867 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 70 :HCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 65 :YVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQ 2cwzA 105 :GDLIGVGRTEQVILPKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4006 Number of alignments=868 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQL 2cwzA 8 :YEAVFETVVTPEMTVRFEELGPV T0362 30 :FRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVAL 2cwzA 32 :PVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEA T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 69 :RHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQTRHR 2cwzA 105 :GDLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4012 Number of alignments=869 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRW 2cwzA 8 :YEAVFETVVTPEMTVRFEELGPVHPV T0362 35 :ESWEESLESYGLNPADIFPGSRKSEVTPEVAL 2cwzA 37 :YWMVKHMELAGRKIILPFLEEGEEGIGSYVEA T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 69 :RHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQTRHR 2cwzA 105 :GDLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4018 Number of alignments=870 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 64 :SYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQ 2cwzA 105 :GDLIGVGRTEQVILPKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4020 Number of alignments=871 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 70 :HCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 2cwzA 65 :YVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNE T0362 109 :EQIAAHALIRHLAINAQT 2cwzA 105 :GDLIGVGRTEQVILPKAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4022 Number of alignments=872 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIH 2cwzA 1 :MRPIPEGYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARH T0362 76 :RRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2cwzA 71 :LASALPGMRVRVVARHEKTEGNRVYARVEAYNEL T0362 110 :QIAAHALIRHLAINAQTRHR 2cwzA 106 :DLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4026 Number of alignments=873 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)S143 because last residue in template chain is (2cwzA)R138 T0362 1 :MNPE 2cwzA 1 :MRPI T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFR 2cwzA 9 :EAVFETVVTPEMTVRFEELGPVHPVYA T0362 34 :HESWEESLESYGLNP 2cwzA 36 :TYWMVKHMELAGRKI T0362 51 :IFPGSRKSEVTPEVALPIIHC 2cwzA 51 :ILPFLEEGEEGIGSYVEARHL T0362 77 :RPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2cwzA 72 :ASALPGMRVRVVARHEKTEGNRVYARVEAYNEL T0362 110 :QIAAHALIRHLAINAQTRHR 2cwzA 106 :DLIGVGRTEQVILPKAKVEA T0362 131 :ALPEGIDRWLEA 2cwzA 126 :LFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4033 Number of alignments=874 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 78 :PIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2cwzA 73 :SALPGMRVRVVARHEKTEGNRVYARVEAYNEL T0362 110 :QIAAHALIRHLAINAQ 2cwzA 106 :DLIGVGRTEQVILPKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4035 Number of alignments=875 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4035 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 78 :PIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2cwzA 29 :PVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4036 Number of alignments=876 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2cwzA 26 :ELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4037 Number of alignments=877 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 1 :MNPENWLLLRRVVRFGDT 2cwzA 4 :IPEGYEAVFETVVTPEMT T0362 19 :DAAGVMHFHQLFRWCHESWEESLESYGLNP 2cwzA 25 :EELGPVHPVYATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 129 :RCALPEGIDRWLEASGVG 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4042 Number of alignments=878 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 4 :IPE T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLF 2cwzA 13 :ETVVTPEMTVRFEELGPVHPVYATYWM T0362 38 :EESLESYGLNPADIF 2cwzA 40 :VKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINA 2cwzA 104 :LGDLIGVGRTEQVILPK T0362 130 :CALPEGIDR 2cwzA 121 :AKVEALFRR T0362 140 :LEASGVGK 2cwzA 130 :LKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4049 Number of alignments=879 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MN 2cwzA 1 :MR T0362 3 :PENWLLLRRVVRFGDT 2cwzA 6 :EGYEAVFETVVTPEMT T0362 24 :MHFHQLFRWCHESWEESLESY 2cwzA 34 :YATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQTR 2cwzA 104 :LGDLIGVGRTEQVILPKAKV T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4055 Number of alignments=880 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDT 2cwzA 7 :GYEAVFETVVTPEMT T0362 23 :VMHFHQLFRWCHESWEESLESY 2cwzA 33 :VYATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQT 2cwzA 104 :LGDLIGVGRTEQVILPKAK T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4061 Number of alignments=881 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 6 :WLLLRRVVRFGDT 2cwzA 15 :VVTPEMTVRFEEL T0362 26 :FHQLFRWCHESWEESLESYGLNPADIF 2cwzA 28 :GPVHPVYATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 129 :RCALPEGIDRWLEASGVG 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4066 Number of alignments=882 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLF 2cwzA 16 :VTPEMTVRFEELGPVHPVYATYWM T0362 31 :RWCHESWEESLE 2cwzA 41 :KHMELAGRKIIL T0362 47 :NP 2cwzA 53 :PF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQ 2cwzA 104 :LGDLIGVGRTEQVILPKA T0362 131 :ALPEGIDRW 2cwzA 122 :KVEALFRRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4072 Number of alignments=883 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 2 :NPENWLLLRRVVRFGDT 2cwzA 5 :PEGYEAVFETVVTPEMT T0362 24 :MHFHQLFRWCHESWEESLESY 2cwzA 34 :YATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQTR 2cwzA 104 :LGDLIGVGRTEQVILPKAKV T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4077 Number of alignments=884 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 1 :MNPENWLLLRRVVRFGDT 2cwzA 4 :IPEGYEAVFETVVTPEMT T0362 23 :VMHFHQLFRWCHESWEESLESY 2cwzA 33 :VYATYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 133 :PEGIDRWLEASG 2cwzA 120 :KAKVEALFRRLK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4082 Number of alignments=885 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2cwzA 13 :ETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKII T0362 46 :LNPADIFPG 2cwzA 52 :LPFLEEGEE T0362 63 :EVALPI 2cwzA 61 :GIGSYV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 67 :EARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 129 :RCALPEGIDRWLEASGVG 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4089 Number of alignments=886 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLF 2cwzA 13 :ETVVTPEMTVRFEELGPVHPVYATYWM T0362 31 :RWCHES 2cwzA 41 :KHMELA T0362 41 :LESYGLNPADIFPG 2cwzA 47 :GRKIILPFLEEGEE T0362 63 :EVAL 2cwzA 61 :GIGS T0362 70 :HCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 65 :YVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 129 :RCALPEGIDRWLEASGVG 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4097 Number of alignments=887 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MN 2cwzA 1 :MR T0362 3 :PENWLLLRRVVRFGDT 2cwzA 6 :EGYEAVFETVVTPEMT T0362 24 :MHFHQLFRWCHESWEESLE 2cwzA 34 :YATYWMVKHMELAGRKIIL T0362 50 :DIFPG 2cwzA 53 :PFLEE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 58 :GEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQTR 2cwzA 104 :LGDLIGVGRTEQVILPKAKV T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4104 Number of alignments=888 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDT 2cwzA 7 :GYEAVFETVVTPEMT T0362 23 :VMHFHQLFRWCHESWEESLE 2cwzA 33 :VYATYWMVKHMELAGRKIIL T0362 50 :DIFPG 2cwzA 53 :PFLEE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 58 :GEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINA 2cwzA 104 :LGDLIGVGRTEQVILPK T0362 134 :EGIDRWL 2cwzA 121 :AKVEALF T0362 141 :EASGVGK 2cwzA 131 :KERWEAE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4112 Number of alignments=889 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 10 :RRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2cwzA 19 :EMTVRFEELGPVHPVYATYWMVKHMELAGRKII T0362 46 :LNPADIFPG 2cwzA 52 :LPFLEEGEE T0362 63 :EVALPI 2cwzA 61 :GIGSYV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 67 :EARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 129 :RCALPEGIDRWLEASGVG 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4118 Number of alignments=890 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLF 2cwzA 16 :VTPEMTVRFEELGPVHPVYATYWM T0362 31 :RWCHESW 2cwzA 41 :KHMELAG T0362 42 :ESYGLNPADIFPG 2cwzA 48 :RKIILPFLEEGEE T0362 63 :EVA 2cwzA 61 :GIG T0362 69 :IHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 64 :SYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQ 2cwzA 104 :LGDLIGVGRTEQVILPKA T0362 131 :ALPEGIDRW 2cwzA 122 :KVEALFRRL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4125 Number of alignments=891 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)K147 because last residue in template chain is (2cwzA)R138 T0362 2 :NPENWLLLRRVVRFGDT 2cwzA 5 :PEGYEAVFETVVTPEMT T0362 24 :MHFHQLFRWCHESWEESLE 2cwzA 34 :YATYWMVKHMELAGRKIIL T0362 50 :DIFPG 2cwzA 53 :PFLEE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 58 :GEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQTR 2cwzA 104 :LGDLIGVGRTEQVILPKAKV T0362 133 :PEGIDRWLEASGVG 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4131 Number of alignments=892 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 2 :NPENWLLLRRVVRFGDT 2cwzA 5 :PEGYEAVFETVVTPEMT T0362 23 :VMHFHQLFRWCHESWEESLE 2cwzA 33 :VYATYWMVKHMELAGRKIIL T0362 50 :DIFPG 2cwzA 53 :PFLEE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 58 :GEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 133 :PEGIDRWLEAS 2cwzA 120 :KAKVEALFRRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4137 Number of alignments=893 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)G144 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGD 2cwzA 13 :ETVVTPEMTVRFEE T0362 21 :AGVMHFHQLFRWCHESWEESLESYGLNPADI 2cwzA 27 :LGPVHPVYATYWMVKHMELAGRKIILPFLEE T0362 60 :VTPEVALPI 2cwzA 58 :GEEGIGSYV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 67 :EARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 126 :TRHRCALPEGIDRWLEAS 2cwzA 120 :KAKVEALFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4144 Number of alignments=894 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDT 2cwzA 13 :ETVVTPEMTVRFEEL T0362 22 :GVMHFHQLFRWCHESWEESLESYGLNPADI 2cwzA 28 :GPVHPVYATYWMVKHMELAGRKIILPFLEE T0362 60 :VTPEVALP 2cwzA 58 :GEEGIGSY T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 66 :VEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQTR 2cwzA 104 :LGDLIGVGRTEQVILPKAKV T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4151 Number of alignments=895 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVVRFGDT 2cwzA 7 :GYEAVFETVVTPEMT T0362 28 :QLFRWCHESWEESL 2cwzA 38 :WMVKHMELAGRKII T0362 46 :LNP 2cwzA 52 :LPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINA 2cwzA 104 :LGDLIGVGRTEQVILPK T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4158 Number of alignments=896 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set Warning: unaligning (T0362)I148 because last residue in template chain is (2cwzA)R138 T0362 1 :MNP 2cwzA 1 :MRP T0362 4 :ENWLLLRRVV 2cwzA 7 :GYEAVFETVV T0362 14 :RFGD 2cwzA 23 :RFEE T0362 26 :FHQLFRWCHESWEESLESY 2cwzA 36 :TYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 133 :P 2cwzA 120 :K T0362 134 :EGIDRWLEASGVGK 2cwzA 124 :EALFRRLKERWEAE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4166 Number of alignments=897 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 10 :RRVVRFGD 2cwzA 19 :EMTVRFEE T0362 21 :AGVMHFHQLFRWCHESWEESLESYGLNPADI 2cwzA 27 :LGPVHPVYATYWMVKHMELAGRKIILPFLEE T0362 60 :VTPEVALPI 2cwzA 58 :GEEGIGSYV T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 67 :EARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAI 2cwzA 104 :LGDLIGVGRTEQVIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4171 Number of alignments=898 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 9 :LRRVVRFGDT 2cwzA 18 :PEMTVRFEEL T0362 22 :GVMHFHQLFRWCHESWEESLESYGLNPADI 2cwzA 28 :GPVHPVYATYWMVKHMELAGRKIILPFLEE T0362 60 :VTPEVALP 2cwzA 58 :GEEGIGSY T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 66 :VEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAINAQ 2cwzA 104 :LGDLIGVGRTEQVILPKA Number of specific fragments extracted= 5 number of extra gaps= 0 total=4176 Number of alignments=899 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 30 :FRWCHESWEES 2cwzA 40 :VKHMELAGRKI T0362 49 :ADIF 2cwzA 51 :ILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 134 :EGIDRWLEASGVGK 2cwzA 120 :KAKVEALFRRLKER Number of specific fragments extracted= 5 number of extra gaps= 0 total=4181 Number of alignments=900 # 2cwzA read from 2cwzA/merged-a2m # found chain 2cwzA in template set T0362 1 :MNPENWLLLRRVV 2cwzA 4 :IPEGYEAVFETVV T0362 14 :RFGD 2cwzA 23 :RFEE T0362 26 :FHQLFRWCHESWEESLESY 2cwzA 36 :TYWMVKHMELAGRKIILPF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2cwzA 55 :LEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN T0362 108 :EEQIAAHALIRHLAIN 2cwzA 104 :LGDLIGVGRTEQVILP T0362 133 :PEGIDRWLEAS 2cwzA 120 :KAKVEALFRRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4187 Number of alignments=901 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gvhA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2gvhA/merged-a2m # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gvhA)K9 Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)K147 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 T0362 3 :P 2gvhA 10 :P T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 14 :GATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHC 2gvhA 56 :RTPFVTASC T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAINAQTRHR 2gvhA 110 :HTCTRGIFHMVAIPEGEDAA T0362 133 :PEGIDRWLEA 2gvhA 130 :SYVLPELLTE T0362 148 :IGSI 2gvhA 148 :VTMV Number of specific fragments extracted= 8 number of extra gaps= 1 total=4195 Number of alignments=902 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gvhA)K9 Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 3 :P 2gvhA 10 :P T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 14 :GATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHC 2gvhA 56 :RTPFVTASC T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 110 :HTCTRGIFHMVAI T0362 123 :NA 2gvhA 125 :GE T0362 126 :TRHRCALPEGI 2gvhA 127 :DAASYVLPELL Number of specific fragments extracted= 8 number of extra gaps= 1 total=4203 Number of alignments=903 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 13 :HGATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHC 2gvhA 56 :RTPFVTASC T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 110 :HTCTRGIFHMVAI T0362 123 :N 2gvhA 125 :G Number of specific fragments extracted= 6 number of extra gaps= 1 total=4209 Number of alignments=904 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHC 2gvhA 56 :RTPFVTASC T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 110 :HTCTRGIFHMVAI T0362 123 :NAQT 2gvhA 125 :GEDA Number of specific fragments extracted= 6 number of extra gaps= 1 total=4215 Number of alignments=905 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 11 :AQHGATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 61 :TPEVALPIIH 2gvhA 56 :RTPFVTASCE T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAIN 2gvhA 110 :HTCTRGIFHMVAIP T0362 125 :QTRHRCAL 2gvhA 124 :EGEDAASY T0362 133 :PEGIDRWLE 2gvhA 134 :PELLTEETP Number of specific fragments extracted= 7 number of extra gaps= 1 total=4222 Number of alignments=906 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 1 :MNPEN 2gvhA 9 :KPAQH T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 61 :TPEVALPIIH 2gvhA 56 :RTPFVTASCE T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAINA 2gvhA 110 :HTCTRGIFHMVAIPE T0362 126 :TRHRCAL 2gvhA 125 :GEDAASY T0362 133 :PEGIDRWLE 2gvhA 134 :PELLTEETP T0362 142 :A 2gvhA 177 :A Number of specific fragments extracted= 9 number of extra gaps= 1 total=4231 Number of alignments=907 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 3 :PEN 2gvhA 12 :QHG T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 61 :TPEVALPIIH 2gvhA 56 :RTPFVTASCE T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAINAQTRHR 2gvhA 110 :HTCTRGIFHMVAIPEGEDAA Number of specific fragments extracted= 6 number of extra gaps= 1 total=4237 Number of alignments=908 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 3 :PEN 2gvhA 12 :QHG T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 61 :TPEVALPIIH 2gvhA 56 :RTPFVTASCE T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAINA 2gvhA 110 :HTCTRGIFHMVAIPE T0362 126 :TRHRCAL 2gvhA 125 :GEDAASY T0362 133 :PE 2gvhA 134 :PE Number of specific fragments extracted= 8 number of extra gaps= 1 total=4245 Number of alignments=909 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)R127 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 T0362 1 :MNPE 2gvhA 139 :EETP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEES 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVA T0362 54 :GSRKSE 2gvhA 182 :ASRYCG T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2gvhA 188 :KLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSEN T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 128 :H 2gvhA 259 :P Number of specific fragments extracted= 6 number of extra gaps= 0 total=4251 Number of alignments=910 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)R127 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 T0362 1 :MNPE 2gvhA 139 :EETP T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESW 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAA T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2gvhA 188 :KLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSEN T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 128 :H 2gvhA 259 :P Number of specific fragments extracted= 5 number of extra gaps= 0 total=4256 Number of alignments=911 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set T0362 74 :DFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2gvhA 199 :DFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=4257 Number of alignments=912 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2gvhA 196 :ERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSEN Number of specific fragments extracted= 1 number of extra gaps= 0 total=4258 Number of alignments=913 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 74 :DFRRPIHTG 2gvhA 68 :DFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAETIIGRQQHTCTRGI T0362 127 :RHRCALPEGID 2gvhA 117 :FHMVAIPEGED Number of specific fragments extracted= 3 number of extra gaps= 1 total=4261 Number of alignments=914 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 72 :QADFRRPIHTG 2gvhA 66 :RIDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEEQIAAHAL 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAETIIGRQQH T0362 121 :AINAQTRHRCALPEGID 2gvhA 111 :TCTRGIFHMVAIPEGED Number of specific fragments extracted= 3 number of extra gaps= 1 total=4264 Number of alignments=915 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAAT T0362 60 :VTPEVALPIIHCQ 2gvhA 53 :RFGRTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4270 Number of alignments=916 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAAT T0362 60 :VTPEVALPIIHCQ 2gvhA 53 :RFGRTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4276 Number of alignments=917 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)P3 because first residue in template chain is (2gvhA)K9 Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 4 :EN 2gvhA 10 :PA T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGR T0362 64 :VALPIIHCQ 2gvhA 57 :TPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 108 :EE 2gvhA 106 :GR T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 8 number of extra gaps= 1 total=4284 Number of alignments=918 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)P3 because first residue in template chain is (2gvhA)K9 Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 4 :E 2gvhA 10 :P T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2gvhA 15 :ATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRF T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 108 :EE 2gvhA 105 :IG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 8 number of extra gaps= 1 total=4292 Number of alignments=919 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAAS T0362 60 :VTPEVALPIIHCQ 2gvhA 184 :RYCGKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSEN T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4297 Number of alignments=920 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 19 :LIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAAT T0362 60 :VTPEVALPIIHCQ 2gvhA 53 :RFGRTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 110 :QIAAHALIRHLAINA 2gvhA 110 :HTCTRGIFHMVAIPE T0362 125 :QTRHRCALPEGID 2gvhA 126 :EDAASYVLPELLT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4303 Number of alignments=921 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAAS T0362 60 :VTPEVALPIIHCQ 2gvhA 184 :RYCGKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4309 Number of alignments=922 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAAS T0362 60 :VTPEVALPIIHCQ 2gvhA 184 :RYCGKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4315 Number of alignments=923 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 23 :VFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4321 Number of alignments=924 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 23 :VFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRCEE 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVAET T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4327 Number of alignments=925 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 16 :TTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 108 :EE 2gvhA 106 :GR T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 7 number of extra gaps= 1 total=4334 Number of alignments=926 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 15 :ATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 108 :EE 2gvhA 105 :IG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 7 number of extra gaps= 1 total=4341 Number of alignments=927 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 108 :EEQIAAHALIRHLAI 2gvhA 108 :QQHTCTRGIFHMVAI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4346 Number of alignments=928 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)D83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gvhA)I78 Warning: unaligning (T0362)A84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gvhA)I78 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 18 :RLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFG T0362 63 :EVALPIIHCQ 2gvhA 56 :RTPFVTASCE T0362 73 :ADFRRPIHTG 2gvhA 67 :IDFRQPARIG T0362 85 :LAMELRPERLNPNSFQVHFEFRC 2gvhA 79 :VEFTARPVKAGRRSLTVEVEMVA T0362 110 :QIAAHALIRHLAINA 2gvhA 110 :HTCTRGIFHMVAIPE T0362 125 :QTRHRCALPEGID 2gvhA 126 :EDAASYVLPELLT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4352 Number of alignments=929 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 2 :N 2gvhA 142 :P T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYC T0362 63 :EVALPIIHCQ 2gvhA 187 :GKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 7 number of extra gaps= 0 total=4359 Number of alignments=930 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYC T0362 63 :EVALPIIHCQ 2gvhA 187 :GKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EE 2gvhA 237 :TG T0362 110 :QIAAHALIRHLAI 2gvhA 241 :HITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4365 Number of alignments=931 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTAS T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 179 :FVAASRYCGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4369 Number of alignments=932 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFP 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTAS T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 179 :FVAASRYCGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4373 Number of alignments=933 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIF 2gvhA 22 :IVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTA T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 185 :YCGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4377 Number of alignments=934 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 2gvhA 15 :ATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTP T0362 63 :EVALPIIHCQ 2gvhA 187 :GKLVVLASSE T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 198 :IDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4382 Number of alignments=935 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 12 :VVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gvhA 153 :IVFPDQANSAGRMFGGEAIAYMTKAAFVAASR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 185 :YCGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4386 Number of alignments=936 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2gvhA 152 :EIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRY T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 186 :CGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4390 Number of alignments=937 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASR T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 185 :YCGKLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4394 Number of alignments=938 # 2gvhA read from 2gvhA/merged-a2m # found chain 2gvhA in template set Warning: unaligning (T0362)N2 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)A147 Warning: unaligning (T0362)W6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)A147 Warning: unaligning (T0362)N123 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2gvhA)R258 Warning: unaligning (T0362)H128 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2gvhA)R258 Warning: unaligning (T0362)L132 because last residue in template chain is (2gvhA)I262 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2gvhA 148 :VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRY T0362 61 :T 2gvhA 186 :C T0362 63 :EVALPIIHC 2gvhA 187 :GKLVVLASS T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2gvhA 197 :RIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS T0362 108 :EEQIAAHALIRHLAI 2gvhA 239 :ERHITATGHFTMVAV T0362 129 :RCA 2gvhA 259 :PAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4400 Number of alignments=939 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ixlA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ixlA expands to /projects/compbio/data/pdb/1ixl.pdb.gz 1ixlA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 1ixlA/merged-a2m # 1ixlA read from 1ixlA/merged-a2m # adding 1ixlA to template set # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGD 1ixlA 22 :LIKEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4405 Number of alignments=940 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWL 1ixlA 1 :MIPVEQR T0362 8 :LLRRVVRFGD 1ixlA 29 :EVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4411 Number of alignments=941 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 3 :PENWLLLRRVVRFGD 1ixlA 24 :KEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAIN 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4416 Number of alignments=942 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 5 :NWLLLRRVVRFGD 1ixlA 26 :GYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINA 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4421 Number of alignments=943 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGD 1ixlA 22 :LIKEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4426 Number of alignments=944 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :M 1ixlA 10 :K T0362 2 :NPENWLLLRRVVRFGD 1ixlA 23 :IKEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4432 Number of alignments=945 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 3 :PENWLLLRRVVRFGD 1ixlA 24 :KEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAIN 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4437 Number of alignments=946 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 3 :PENWLLLRRVVRFGD 1ixlA 24 :KEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPE 1ixlA 64 :NEPTVVLGKAEVRFTKPVKVGDKLVAKAKII T0362 93 :RLNPNSF 1ixlA 96 :DLGKKKI T0362 101 :VHFEFRCEEQIAAHALIRHLAINA 1ixlA 103 :VEVKVYREEEVVLEGKFYCYVLEK Number of specific fragments extracted= 5 number of extra gaps= 0 total=4442 Number of alignments=947 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGD 1ixlA 22 :LIKEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4445 Number of alignments=948 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)H128 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGD 1ixlA 22 :LIKEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTR 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLEKHVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4448 Number of alignments=949 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 3 :PENWLLLRRVVRFGD 1ixlA 24 :KEGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4451 Number of alignments=950 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 4 :ENWLLLRRVVRFGD 1ixlA 25 :EGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4454 Number of alignments=951 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 75 :FRRPIHTGDAL 1ixlA 77 :FTKPVKVGDKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=4455 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 70 :HCQADFRRPIHTGDALAME 1ixlA 72 :KAEVRFTKPVKVGDKLVAK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4456 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)R138 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEE 1ixlA 23 :IKEGYAEVELETIDEMKVDEKGLVHGGFTFGLADYAAML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE T0362 134 :EGID 1ixlA 126 :KHVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4459 Number of alignments=952 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)R138 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEE 1ixlA 23 :IKEGYAEVELETIDEMKVDEKGLVHGGFTFGLADYAAML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE T0362 125 :QT 1ixlA 126 :KH T0362 136 :ID 1ixlA 128 :VL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4463 Number of alignments=953 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFGD 1ixlA 25 :EGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPE 1ixlA 64 :NEPT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1ixlA 68 :VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVL T0362 125 :QTR 1ixlA 125 :EKH Number of specific fragments extracted= 6 number of extra gaps= 0 total=4469 Number of alignments=954 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFGDT 1ixlA 25 :EGYAEVELETIDEMK T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPE 1ixlA 64 :NEPT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1ixlA 68 :VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVL T0362 125 :QTR 1ixlA 125 :EKH Number of specific fragments extracted= 6 number of extra gaps= 0 total=4475 Number of alignments=955 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 18 :TDAAGVMHFHQLFRWCHESWEE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4477 Number of alignments=956 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 17 :DTDAAGVMHFHQLFRWCHESWEE 1ixlA 39 :KVDEKGLVHGGFTFGLADYAAML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4479 Number of alignments=957 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 7 :LLLRRVVRFGD 1ixlA 28 :AEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPE 1ixlA 64 :NEPT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1ixlA 68 :VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4483 Number of alignments=958 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 4 :ENWLLLRRVVRFGDT 1ixlA 25 :EGYAEVELETIDEMK T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPE 1ixlA 64 :NEPT T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 68 :VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4487 Number of alignments=959 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :M 1ixlA 1 :M T0362 2 :N 1ixlA 3 :P T0362 3 :PENWLLLRRVVRFGDT 1ixlA 5 :EQRTHKLTSRILVGKP T0362 19 :DAAGVMHFHQLFRWCHESWEESLE 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE T0362 146 :GKIG 1ixlA 126 :KHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4493 Number of alignments=960 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :M 1ixlA 1 :M T0362 2 :N 1ixlA 3 :P T0362 3 :PENWLLLRRVVRFG 1ixlA 5 :EQRTHKLTSRILVG T0362 19 :DAAGVMHFHQLFRWCHESWEESLE 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLE T0362 125 :QT 1ixlA 126 :KH T0362 148 :IG 1ixlA 128 :VL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4500 Number of alignments=961 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFGD 1ixlA 25 :EGYAEVELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 45 :G 1ixlA 64 :N T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV T0362 144 :GVGKIG 1ixlA 124 :LEKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4506 Number of alignments=962 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFGDT 1ixlA 25 :EGYAEVELETIDEMK T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAV T0362 45 :G 1ixlA 64 :N T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVL T0362 145 :VGKIG 1ixlA 125 :EKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4512 Number of alignments=963 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 18 :TDAAGVMHFHQLFRWCHESWEESLE 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4514 Number of alignments=964 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLE 1ixlA 39 :KVDEKGLVHGGFTFGLADYAAMLAVN T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4516 Number of alignments=965 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 9 :LRRVVRFGD 1ixlA 30 :VELETIDEM T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 45 :G 1ixlA 64 :N T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4520 Number of alignments=966 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 4 :ENWLLLRRVVRFGDT 1ixlA 25 :EGYAEVELETIDEMK T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAV T0362 45 :G 1ixlA 64 :N T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 65 :EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4524 Number of alignments=967 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFG 1ixlA 6 :QRTHKLTSRILVG T0362 17 :DTDAAGVMHFHQLFRWCHES 1ixlA 39 :KVDEKGLVHGGFTFGLADYA T0362 49 :ADI 1ixlA 59 :AML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYR T0362 108 :EEQIAAHALIRHLA 1ixlA 116 :EGKFYCYVLEKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4530 Number of alignments=968 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)R138 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVRFG 1ixlA 6 :QRTHKLTSRILVG T0362 18 :TDAAGVMHFHQLFRWCHES 1ixlA 40 :VDEKGLVHGGFTFGLADYA T0362 50 :DIF 1ixlA 59 :AML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQT 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLEKHV T0362 137 :D 1ixlA 129 :L Number of specific fragments extracted= 6 number of extra gaps= 0 total=4536 Number of alignments=969 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNPENWLLL 1ixlA 1 :MIPVEQRTH T0362 10 :RRVVRFG 1ixlA 20 :PILIKEG T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPEV 1ixlA 64 :NEPTV T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 69 :VLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV T0362 144 :GVGKIG 1ixlA 124 :LEKHVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4542 Number of alignments=970 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set Warning: unaligning (T0362)S150 because last residue in template chain is (1ixlA)D130 T0362 1 :MNP 1ixlA 1 :MIP T0362 4 :ENWLLLRRVVR 1ixlA 25 :EGYAEVELETI T0362 17 :D 1ixlA 36 :D T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPEVA 1ixlA 64 :NEPTVV T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 1ixlA 70 :LGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYV T0362 144 :GVGKIG 1ixlA 124 :LEKHVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4549 Number of alignments=971 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 18 :TDAAGVMHFHQLFRWCHES 1ixlA 40 :VDEKGLVHGGFTFGLADYA T0362 49 :ADI 1ixlA 59 :AML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALI 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4552 Number of alignments=972 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 18 :TDAAGVMHFHQLFRWCHES 1ixlA 40 :VDEKGLVHGGFTFGLADYA T0362 50 :DIF 1ixlA 59 :AML T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRH 1ixlA 62 :AVNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYC Number of specific fragments extracted= 3 number of extra gaps= 0 total=4555 Number of alignments=973 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 19 :DAAGVMHFHQLFRWCHESWEESL 1ixlA 41 :DEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPEV 1ixlA 64 :NEPTV T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1ixlA 69 :VLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4558 Number of alignments=974 # 1ixlA read from 1ixlA/merged-a2m # found chain 1ixlA in template set T0362 18 :TDAAGVMHFHQLFRWCHESWEESL 1ixlA 40 :VDEKGLVHGGFTFGLADYAAMLAV T0362 60 :VTPEVA 1ixlA 64 :NEPTVV T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHL 1ixlA 70 :LGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4561 Number of alignments=975 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2gf6A/merged-a2m # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 50 :IVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 150 :SI 2gf6A 132 :SI Number of specific fragments extracted= 6 number of extra gaps= 1 total=4567 Number of alignments=976 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 50 :IVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 150 :SI 2gf6A 132 :SI Number of specific fragments extracted= 6 number of extra gaps= 1 total=4573 Number of alignments=977 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 50 :IVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4577 Number of alignments=978 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 50 :IVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4581 Number of alignments=979 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLN 2gf6A 44 :VGIP T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 48 :YPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 150 :SI 2gf6A 132 :SI Number of specific fragments extracted= 6 number of extra gaps= 1 total=4587 Number of alignments=980 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLN 2gf6A 44 :VGIP T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 48 :YPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 150 :SI 2gf6A 133 :IK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4593 Number of alignments=981 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLN 2gf6A 44 :VGIP T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 48 :YPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4597 Number of alignments=982 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLN 2gf6A 44 :VGIP T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 48 :YPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4601 Number of alignments=983 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 3 number of extra gaps= 1 total=4604 Number of alignments=984 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 4 number of extra gaps= 1 total=4608 Number of alignments=985 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4611 Number of alignments=986 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPG 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLE 2gf6A 115 :PKIWKSTEMPKEIMDKLS Number of specific fragments extracted= 3 number of extra gaps= 1 total=4614 Number of alignments=987 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 7 :VFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGI 2gf6A 115 :PKIWKSTEMPKEI Number of specific fragments extracted= 3 number of extra gaps= 1 total=4617 Number of alignments=988 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNP 2gf6A 7 :VFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIP T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 48 :YPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGI 2gf6A 115 :PKIWKSTEMPKEI Number of specific fragments extracted= 3 number of extra gaps= 1 total=4620 Number of alignments=989 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4625 Number of alignments=990 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4630 Number of alignments=991 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4635 Number of alignments=992 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLE 2gf6A 115 :PKIWKSTEMPKEIMDKLS T0362 150 :SI 2gf6A 133 :IK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4641 Number of alignments=993 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4645 Number of alignments=994 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4649 Number of alignments=995 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4654 Number of alignments=996 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPAD 2gf6A 44 :VGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4659 Number of alignments=997 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :MNP 2gf6A 1 :MEN T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 4 :IEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4664 Number of alignments=998 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 1 :MN 2gf6A 1 :ME T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4669 Number of alignments=999 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)G146 because last residue in template chain is (2gf6A)K134 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLE 2gf6A 115 :PKIWKSTEMPKEIMDKLS T0362 145 :V 2gf6A 133 :I Number of specific fragments extracted= 6 number of extra gaps= 1 total=4675 Number of alignments=1000 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 1 :M 2gf6A 1 :M T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLE 2gf6A 115 :PKIWKSTEMPKEIMDKLS T0362 150 :SI 2gf6A 133 :IK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4681 Number of alignments=1001 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4685 Number of alignments=1002 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4689 Number of alignments=1003 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4693 Number of alignments=1004 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPADIFP 2gf6A 44 :VGIPYPIVNE T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 54 :NLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4697 Number of alignments=1005 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 3 number of extra gaps= 1 total=4700 Number of alignments=1006 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 Warning: unaligning (T0362)S143 because last residue in template chain is (2gf6A)K134 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWLEA 2gf6A 115 :PKIWKSTEMPKEIMDKLSI Number of specific fragments extracted= 3 number of extra gaps= 1 total=4703 Number of alignments=1007 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 149 :GSI 2gf6A 132 :SIK Number of specific fragments extracted= 4 number of extra gaps= 1 total=4707 Number of alignments=1008 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 51 :I 2gf6A 50 :I T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL T0362 149 :GSI 2gf6A 132 :SIK Number of specific fragments extracted= 6 number of extra gaps= 1 total=4713 Number of alignments=1009 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4716 Number of alignments=1010 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 3 :NIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4719 Number of alignments=1011 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADI 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPI T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4722 Number of alignments=1012 # 2gf6A read from 2gf6A/merged-a2m # found chain 2gf6A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2gf6A)M1 Warning: unaligning (T0362)I122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2gf6A)N114 Warning: unaligning (T0362)N123 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2gf6A)N114 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2gf6A 2 :ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKE T0362 44 :YGLNPA 2gf6A 44 :VGIPYP T0362 51 :I 2gf6A 50 :I T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLA 2gf6A 51 :VNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIA T0362 124 :AQTRHRCALPEGIDRWL 2gf6A 115 :PKIWKSTEMPKEIMDKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4727 Number of alignments=1013 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iq6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1iq6A/merged-a2m # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)Q125 because last residue in template chain is (1iq6A)P133 T0362 5 :NWLLLRRVVRFG 1iq6A 3 :QSLEVGQKARLS T0362 17 :DTDAAGVMHFHQ 1iq6A 38 :DPAFAATTAFER T0362 31 :RWCHESWEESLESYGLNP 1iq6A 50 :PIVHGMLLASLFSGLLGQ T0362 51 :IFPG 1iq6A 68 :QLPG T0362 62 :PEVALPIIH 1iq6A 72 :KGSIYLGQS T0362 73 :ADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINA 1iq6A 81 :LSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4733 Number of alignments=1014 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 5 :NWLLLRRVVRFG 1iq6A 3 :QSLEVGQKARLS T0362 17 :DTDAAGVMHFHQ 1iq6A 38 :DPAFAATTAFER T0362 31 :RWCHESWEESLESYGLNP 1iq6A 50 :PIVHGMLLASLFSGLLGQ T0362 51 :IFPG 1iq6A 68 :QLPG T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 1iq6A 72 :KGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIF T0362 124 :AQTRHRCAL 1iq6A 124 :VTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4739 Number of alignments=1015 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 71 :CQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 79 :QSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4740 Number of alignments=1016 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 64 :VALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 72 :KGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4741 Number of alignments=1017 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)G149 because last residue in template chain is (1iq6A)P133 T0362 4 :ENW 1iq6A 3 :QSL T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWC 1iq6A 39 :PAFAATTAFERPIVHGMLLASLFSGLL T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 66 :GQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ T0362 134 :EG 1iq6A 119 :GG T0362 137 :DRWLEASGVGKI 1iq6A 121 :ALAVTGEAVVKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4746 Number of alignments=1018 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :EN 1iq6A 3 :QS T0362 6 :WL 1iq6A 34 :PL T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWC 1iq6A 40 :AFAATTAFERPIVHGMLLASLFSGLL T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 66 :GQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ T0362 125 :QTRHRCAL 1iq6A 125 :TGEAVVKL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4751 Number of alignments=1019 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 11 :RVVRFGDTDAAGVMHFHQLFRWC 1iq6A 43 :ATTAFERPIVHGMLLASLFSGLL T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 66 :GQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4753 Number of alignments=1020 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 12 :VVRFGDTDAAGVMHFHQLFRWC 1iq6A 44 :TTAFERPIVHGMLLASLFSGLL T0362 58 :SEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 1iq6A 66 :GQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4755 Number of alignments=1021 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 1 :MNPENWLLLRRV 1iq6A 17 :FGAAEVAAFAAL T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESW 1iq6A 45 :TAFERPIVHGMLLASLFSGLLGQQL T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 1iq6A 70 :PGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIF T0362 117 :IRHLAINAQTRHRCAL 1iq6A 117 :TQGGALAVTGEAVVKL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4759 Number of alignments=1022 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 1 :MNPENWLLLR 1iq6A 17 :FGAAEVAAFA T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 1iq6A 43 :ATTAFERPIVHGMLLASLFSGLLGQQL T0362 62 :PEVALPI 1iq6A 71 :GKGSIYL T0362 69 :I 1iq6A 79 :Q T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCE 1iq6A 80 :SLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIF T0362 117 :IRHLAINAQTRHRCAL 1iq6A 117 :TQGGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4765 Number of alignments=1023 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQI 1iq6A 80 :SLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=4766 Number of alignments=1024 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 69 :IH 1iq6A 77 :LG T0362 72 :QADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQI 1iq6A 80 :SLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=4768 Number of alignments=1025 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 75 :FRRPIHTGDALAMEL 1iq6A 83 :FKLPVFVGDEVTAEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4769 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 69 :IHCQADFRRPIHTGDALAMELRPER 1iq6A 77 :LGQSLSFKLPVFVGDEVTAEVEVTA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4770 Number of alignments=1026 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1iq6A)P133 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCH 1iq6A 5 :LEVGQKARLSKRFGAAEVAAFAALSEDFNPLHLD T0362 35 :ESWEESLES 1iq6A 41 :FAATTAFER T0362 44 :YGLNPADIFPGSRKS 1iq6A 53 :HGMLLASLFSGLLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4776 Number of alignments=1027 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)I122 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCH 1iq6A 8 :GQKARLSKRFGAAEVAAFAALSEDFNPLHLD T0362 35 :ESWEESLES 1iq6A 41 :FAATTAFER T0362 44 :YGLNPADIFPGSRKS 1iq6A 53 :HGMLLASLFSGLLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4782 Number of alignments=1028 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRRV 1iq6A 8 :GQKARLSKR T0362 16 :GDTDAAG 1iq6A 30 :EDFNPLH T0362 24 :MHFHQLFRWCHESWEE 1iq6A 52 :VHGMLLASLFSGLLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHL 1iq6A 119 :GGALAVTGEAVVK T0362 132 :L 1iq6A 132 :L Number of specific fragments extracted= 7 number of extra gaps= 0 total=4789 Number of alignments=1029 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 2 :NP 1iq6A 3 :QS T0362 4 :ENWLLLRRV 1iq6A 8 :GQKARLSKR T0362 16 :GDTDAAG 1iq6A 30 :EDFNPLH T0362 24 :MHFHQL 1iq6A 52 :VHGMLL T0362 34 :HESWEESLESY 1iq6A 58 :ASLFSGLLGQQ T0362 51 :I 1iq6A 69 :L T0362 60 :VTPEVA 1iq6A 70 :PGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHL 1iq6A 119 :GGALAVTGEAVVK T0362 132 :L 1iq6A 132 :L Number of specific fragments extracted= 11 number of extra gaps= 0 total=4800 Number of alignments=1030 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 44 :YGLNPADIFPGSRKS 1iq6A 53 :HGMLLASLFSGLLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4804 Number of alignments=1031 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 41 :LES 1iq6A 47 :FER T0362 44 :YGLNPADIFPGSRKS 1iq6A 53 :HGMLLASLFSGLLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4809 Number of alignments=1032 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 24 :MHFHQLFRWCHE 1iq6A 52 :VHGMLLASLFSG T0362 40 :SLES 1iq6A 64 :LLGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4814 Number of alignments=1033 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 31 :RWCHESWEESLESY 1iq6A 55 :MLLASLFSGLLGQQ T0362 50 :D 1iq6A 69 :L T0362 60 :VTPEVA 1iq6A 70 :PGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4820 Number of alignments=1034 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)I122 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCH 1iq6A 8 :GQKARLSKRFGAAEVAAFAALSEDFNPLHLD T0362 35 :ESWEESLES 1iq6A 41 :FAATTAFER T0362 44 :YGLNPADIFPG 1iq6A 53 :HGMLLASLFSG T0362 56 :RKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 64 :LLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4826 Number of alignments=1035 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)I122 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCH 1iq6A 8 :GQKARLSKRFGAAEVAAFAALSEDFNPLHLD T0362 35 :ESWEESLES 1iq6A 41 :FAATTAFER T0362 44 :YGLNPADIFPG 1iq6A 53 :HGMLLASLFSG T0362 56 :RKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 64 :LLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4832 Number of alignments=1036 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRRV 1iq6A 8 :GQKARLSKR T0362 16 :GDTDAA 1iq6A 30 :EDFNPL T0362 22 :GVMHFHQLFRWCHES 1iq6A 50 :PIVHGMLLASLFSGL T0362 41 :LES 1iq6A 65 :LGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4839 Number of alignments=1037 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)I122 because last residue in template chain is (1iq6A)P133 T0362 2 :NP 1iq6A 3 :QS T0362 4 :ENWLLLRRV 1iq6A 8 :GQKARLSKR T0362 16 :GD 1iq6A 30 :ED T0362 22 :GVMHFHQLFRWCHESW 1iq6A 50 :PIVHGMLLASLFSGLL T0362 42 :E 1iq6A 66 :G T0362 49 :ADIFPG 1iq6A 67 :QQLPGK T0362 63 :EVA 1iq6A 73 :GSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHLA 1iq6A 119 :GGALAVTGEAVVKL Number of specific fragments extracted= 10 number of extra gaps= 0 total=4849 Number of alignments=1038 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 44 :YGLNPADIFPG 1iq6A 53 :HGMLLASLFSG T0362 56 :RKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 64 :LLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4853 Number of alignments=1039 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 37 :WEESLESYGLNPADIFPG 1iq6A 46 :AFERPIVHGMLLASLFSG T0362 56 :RKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 64 :LLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4857 Number of alignments=1040 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 23 :VMHFHQLFRWCHES 1iq6A 51 :IVHGMLLASLFSGL T0362 41 :LES 1iq6A 65 :LGQ T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERL 1iq6A 68 :QLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4862 Number of alignments=1041 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 23 :VMHFHQLFRWCHES 1iq6A 51 :IVHGMLLASLFSGL T0362 41 :LESY 1iq6A 65 :LGQQ T0362 51 :IFPG 1iq6A 69 :LPGK T0362 63 :EVA 1iq6A 73 :GSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4869 Number of alignments=1042 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :ENWLLLRR 1iq6A 3 :QSLEVGQK T0362 27 :HQLFRWCHESWEESLESYGLNPADIFP 1iq6A 11 :ARLSKRFGAAEVAAFAALSEDFNPLHL T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1iq6A 62 :SGLLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRI T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV T0362 131 :AL 1iq6A 131 :KL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4874 Number of alignments=1043 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :EN 1iq6A 3 :QS T0362 7 :LLLRRVVRFG 1iq6A 5 :LEVGQKARLS T0362 17 :DT 1iq6A 21 :EV T0362 25 :HFHQLFRWCHESWEESL 1iq6A 32 :FNPLHLDPAFAATTAFE T0362 42 :ESYGLNPADIFPGSRK 1iq6A 51 :IVHGMLLASLFSGLLG T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNS 1iq6A 67 :QQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDK T0362 99 :FQVHFEFRC 1iq6A 109 :ATLTTRIFT T0362 108 :EEQIAAHALIR 1iq6A 119 :GGALAVTGEAV T0362 130 :CAL 1iq6A 130 :VKL Number of specific fragments extracted= 9 number of extra gaps= 0 total=4883 Number of alignments=1044 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P3 because first residue in template chain is (1iq6A)A2 Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 4 :ENW 1iq6A 3 :QSL T0362 7 :LLLRRVVRFG 1iq6A 9 :QKARLSKRFG T0362 23 :VMHF 1iq6A 51 :IVHG T0362 31 :RWCHESWEESLESYGLNPADI 1iq6A 55 :MLLASLFSGLLGQQLPGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV T0362 131 :AL 1iq6A 131 :KL Number of specific fragments extracted= 8 number of extra gaps= 0 total=4891 Number of alignments=1045 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set Warning: unaligning (T0362)P133 because last residue in template chain is (1iq6A)P133 T0362 2 :NPENWLLLRRV 1iq6A 6 :EVGQKARLSKR T0362 31 :RWCHESWEESLESYG 1iq6A 55 :MLLASLFSGLLGQQL T0362 60 :VTPEVA 1iq6A 70 :PGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRHL 1iq6A 119 :GGALAVTGEAVVK T0362 132 :L 1iq6A 132 :L Number of specific fragments extracted= 7 number of extra gaps= 0 total=4898 Number of alignments=1046 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1iq6A 70 :PGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRI T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4900 Number of alignments=1047 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 55 :SRK 1iq6A 64 :LLG T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNS 1iq6A 67 :QQLPGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTALREDK T0362 99 :FQVHFEFRC 1iq6A 109 :ATLTTRIFT T0362 108 :EEQIAAHAL 1iq6A 119 :GGALAVTGE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4904 Number of alignments=1048 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 33 :CHESWEESLESYGLNPADI 1iq6A 57 :LASLFSGLLGQQLPGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4908 Number of alignments=1049 # 1iq6A read from 1iq6A/merged-a2m # found chain 1iq6A in training set T0362 31 :RWCHESWEESLESYG 1iq6A 55 :MLLASLFSGLLGQQL T0362 60 :VTPEVA 1iq6A 70 :PGKGSI T0362 68 :IIHCQADFRRPIHTGDALAMELRPERL 1iq6A 76 :YLGQSLSFKLPVFVGDEVTAEVEVTAL T0362 95 :NPNSFQVHFEFRC 1iq6A 105 :DKPIATLTTRIFT T0362 108 :EEQIAAHALIRH 1iq6A 119 :GGALAVTGEAVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4913 Number of alignments=1050 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b6eA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b6eA expands to /projects/compbio/data/pdb/2b6e.pdb.gz 2b6eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2b6eA/merged-a2m # 2b6eA read from 2b6eA/merged-a2m # adding 2b6eA to template set # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 30 :AFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GLNP 2b6eA 77 :GKTV T0362 67 :PIIHCQADFRRPIHTG 2b6eA 81 :VGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAI 2b6eA 124 :KLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=4918 Number of alignments=1051 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MN 2b6eA 1 :ML T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCL T0362 67 :PIIHCQADFRRPIHTG 2b6eA 81 :VGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAI 2b6eA 124 :KLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=4923 Number of alignments=1052 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 45 :GLNP 2b6eA 77 :GKTV T0362 67 :PIIHCQADFRRPIHTG 2b6eA 81 :VGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALI 2b6eA 124 :KLCCVSRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4928 Number of alignments=1053 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCL T0362 67 :PIIHCQADFRRPIHTG 2b6eA 81 :VGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALI 2b6eA 124 :KLCCVSRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4932 Number of alignments=1054 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHE 2b6eA 17 :SNSAVSHLGIEISAFGEDWIEATMPVDHRTMQPFG T0362 36 :SWEESLESYGLNP 2b6eA 60 :ALAETIGSLAGSL T0362 59 :EVTPEVALPIIHCQADFRRPIH 2b6eA 73 :CLEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAI 2b6eA 124 :KLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=4937 Number of alignments=1055 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLRRVVRFG 2b6eA 1 :MLWKKTFTLENLNQLC T0362 17 :DTDAAGVMHFHQLFRWCHE 2b6eA 33 :EDWIEATMPVDHRTMQPFG T0362 36 :SWEESLESYGLNP 2b6eA 60 :ALAETIGSLAGSL T0362 59 :EVTPEVALPIIHCQADFRRPIH 2b6eA 73 :CLEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRTEE T0362 110 :QIAAHALIRHLAI 2b6eA 124 :KLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=4943 Number of alignments=1056 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 69 :IHCQADFRRPIH 2b6eA 83 :LDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRTEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4945 Number of alignments=1057 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 64 :VALPIIHCQADFRRPIH 2b6eA 78 :KTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRTEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4947 Number of alignments=1058 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 103 :FEFRCEEQIAAHALIRHLAI 2b6eA 7 :FTLENLNQLCSNSAVSHLGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=4948 Number of alignments=1059 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set T0362 71 :CQADFRRPIHTGDA 2b6eA 85 :INANHLRPVRSGKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4949 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4953 Number of alignments=1060 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4957 Number of alignments=1061 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :M 2b6eA 1 :M T0362 2 :NP 2b6eA 17 :SN T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=4963 Number of alignments=1062 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :M 2b6eA 1 :M T0362 2 :NP 2b6eA 17 :SN T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 2b6eA 74 :LEEGKTVVGLDINANHLRPVRS T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 2b6eA 96 :GKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=4969 Number of alignments=1063 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4973 Number of alignments=1064 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 36 :IEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4977 Number of alignments=1065 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4981 Number of alignments=1066 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 2b6eA 74 :LEEGKTVVGLDINANHLRPVRS T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 2b6eA 96 :GKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=4985 Number of alignments=1067 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLR 2b6eA 1 :MLWKKTFTLE T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESW 2b6eA 40 :MPVDHRTMQPFGVLHGGVSVALAETIG T0362 45 :GLNPADIFPG 2b6eA 67 :SLAGSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=4991 Number of alignments=1068 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :M 2b6eA 1 :M T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWE 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGS T0362 40 :SL 2b6eA 68 :LA T0362 48 :PADIFPG 2b6eA 70 :GSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 7 number of extra gaps= 0 total=4998 Number of alignments=1069 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :M 2b6eA 1 :M T0362 2 :NP 2b6eA 17 :SN T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGS T0362 44 :YG 2b6eA 72 :LC T0362 52 :FPG 2b6eA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 8 number of extra gaps= 0 total=5006 Number of alignments=1070 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :M 2b6eA 1 :M T0362 2 :NP 2b6eA 17 :SN T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 52 :FPG 2b6eA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 7 number of extra gaps= 0 total=5013 Number of alignments=1071 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESW 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIG T0362 45 :GLNPADIFPG 2b6eA 67 :SLAGSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5018 Number of alignments=1072 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 6 :WLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWE 2b6eA 35 :WIEATMPVDHRTMQPFGVLHGGVSVALAETIGS T0362 40 :SL 2b6eA 68 :LA T0362 48 :PADIFPG 2b6eA 70 :GSLCLEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=5024 Number of alignments=1073 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2b6eA 33 :EDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGS T0362 44 :YG 2b6eA 72 :LC T0362 52 :FPG 2b6eA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=5030 Number of alignments=1074 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 52 :FPG 2b6eA 74 :LEE T0362 63 :EVALPIIHCQADFRRPIHTG 2b6eA 77 :GKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5035 Number of alignments=1075 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLR 2b6eA 1 :MLWKKTFTLE T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHE 2b6eA 40 :MPVDHRTMQPFGVLHGGVSVALAET T0362 44 :YGLNPADIF 2b6eA 65 :IGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=5041 Number of alignments=1076 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLLLR 2b6eA 1 :MLWKKTFTLE T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSR 2b6eA 27 :EISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIG T0362 57 :KSEVTPEVALPIIHCQADFRRPIHTG 2b6eA 71 :SLCLEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5046 Number of alignments=1077 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MNPENWLL 2b6eA 1 :MLWKKTFT T0362 9 :LRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 38 :ATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5051 Number of alignments=1078 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 1 :MN 2b6eA 1 :ML T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIH 2b6eA 74 :LEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5056 Number of alignments=1079 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 30 :FRWCHESWEESLESYGLNPADIFP 2b6eA 50 :FGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5060 Number of alignments=1080 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 37 :WEESLESYGLNPADI 2b6eA 57 :VSVALAETIGSLAGS T0362 58 :SEVTPEVALPIIHCQADFRRPIHTG 2b6eA 72 :LCLEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5064 Number of alignments=1081 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 36 :SWEESLESYGLNPADIF 2b6eA 57 :VSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 2b6eA 74 :LEEGKTVVGLDINANHLRPVRSG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 2b6eA 97 :KVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5068 Number of alignments=1082 # 2b6eA read from 2b6eA/merged-a2m # found chain 2b6eA in template set Warning: unaligning (T0362)N123 because last residue in template chain is (2b6eA)N137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2b6eA 32 :GEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLC T0362 60 :VTPEVALPIIHCQADFRRPIH 2b6eA 74 :LEEGKTVVGLDINANHLRPVR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 2b6eA 95 :SGKVTARATPINLGRNIQVWQIDIRT T0362 108 :EEQIAAHALIRHLAI 2b6eA 122 :ENKLCCVSRLTLSVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5072 Number of alignments=1083 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vh5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 1vh5A/merged-a2m # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vh5A 30 :HIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGY T0362 58 :SEVTPEVALPIIHCQADFRRPIH 1vh5A 72 :LCTEGEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5076 Number of alignments=1084 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vh5A 31 :IGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGY T0362 58 :SEVTPEVALPIIHCQADFRRPIH 1vh5A 72 :LCTEGEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5080 Number of alignments=1085 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 62 :PEVALPIIHCQADFRRPIH 1vh5A 76 :GEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5083 Number of alignments=1086 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vh5A 34 :DTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGY T0362 58 :SEVTPEVALPIIHCQADFRRPIH 1vh5A 72 :LCTEGEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALI 1vh5A 124 :RLCCSSRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5087 Number of alignments=1087 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 30 :HIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 45 :GL 1vh5A 77 :EQ T0362 65 :ALPIIHCQADFRRPIHTG 1vh5A 79 :KVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5092 Number of alignments=1088 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 31 :IGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 45 :GL 1vh5A 77 :EQ T0362 65 :ALPIIHCQADFRRPIHTG 1vh5A 79 :KVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5097 Number of alignments=1089 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 62 :PEVALPIIHCQADFRRPIHTG 1vh5A 76 :GEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALIRHLAI 1vh5A 124 :RLCCSSRLTTAIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5100 Number of alignments=1090 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 65 :ALPIIHCQADFRRPIHTG 1vh5A 79 :KVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRCEE 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFDEK T0362 110 :QIAAHALI 1vh5A 124 :RLCCSSRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5103 Number of alignments=1091 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 2 :IWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS T0362 46 :LNPADIFPG 1vh5A 47 :KQPFGLLHG T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTG 1vh5A 69 :AGYLCTEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIF T0362 107 :CEEQIAAHALIRHLAI 1vh5A 121 :EKGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5108 Number of alignments=1092 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 1vh5A 2 :IWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMP T0362 47 :NPADIFPG 1vh5A 48 :QPFGLLHG T0362 55 :SRKSEVTPEVALPIIHCQADFRRPIHTG 1vh5A 69 :AGYLCTEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFR 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIF T0362 107 :CEEQIAAHALIRHLAI 1vh5A 121 :EKGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5113 Number of alignments=1093 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 31 :RWCHESWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPI 1vh5A 2 :IWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=5114 Number of alignments=1094 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 36 :SWEESLESYGLNPADIFPGSRKSEVTPEVALPIIHCQADFRRPI 1vh5A 7 :ITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPF T0362 80 :HT 1vh5A 94 :RE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5116 Number of alignments=1095 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 109 :EQIAAHALIRHLAINAQTRHRCALPEGIDRWLEASGVGKI 1vh5A 29 :EHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSV Number of specific fragments extracted= 1 number of extra gaps= 0 total=5117 Number of alignments=1096 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5117 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKS 1vh5A 1 :LIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGL T0362 60 :VTPEVALP 1vh5A 53 :LHGGASVV T0362 68 :IIHCQ 1vh5A 80 :VVGLE T0362 73 :ADFRRPIHTG 1vh5A 87 :ANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5123 Number of alignments=1097 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRW 1vh5A 1 :LIWKRKITLEALNAMGEGNMVGFLDI T0362 33 :CHESWEESLES 1vh5A 28 :FEHIGDDTLEA T0362 45 :GLNPADIFPGSRKS 1vh5A 39 :TMPVDSRTKQPFGL T0362 60 :VTPEVALP 1vh5A 53 :LHGGASVV T0362 68 :IIHCQADFRRPIHTG 1vh5A 82 :GLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5130 Number of alignments=1098 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5134 Number of alignments=1099 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 4 :E 1vh5A 18 :G T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 34 :DTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 1vh5A 74 :TEGEQKVVGLEINANHVRSARE T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1vh5A 96 :GRVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5139 Number of alignments=1100 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 20 :AAGVMHFHQLFRWCHESWEESLESY 1vh5A 49 :PFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5143 Number of alignments=1101 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 11 :RVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 40 :MPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5147 Number of alignments=1102 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLA 1vh5A 122 :KGRLCCSSRLTTAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5151 Number of alignments=1103 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHT 1vh5A 74 :TEGEQKVVGLEINANHVRSARE T0362 83 :DALAMELRPERLNPNSFQVHFEFRC 1vh5A 96 :GRVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5155 Number of alignments=1104 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEV 1vh5A 1 :LIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLH T0362 63 :EVALPI 1vh5A 55 :GGASVV T0362 69 :IHCQADFRRPIHTG 1vh5A 83 :LEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5160 Number of alignments=1105 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLF 1vh5A 1 :LIWKRKITLEALNAMGEGNMVGFL T0362 31 :RWCHESWEESLES 1vh5A 26 :IRFEHIGDDTLEA T0362 45 :GLNPADIFPGSRKSEV 1vh5A 39 :TMPVDSRTKQPFGLLH T0362 63 :EVALP 1vh5A 55 :GGASV T0362 68 :IIHCQADFRRPIHTG 1vh5A 82 :GLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5167 Number of alignments=1106 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 3 :P 1vh5A 1 :L T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCT T0362 53 :PG 1vh5A 75 :EG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5173 Number of alignments=1107 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 3 :P 1vh5A 1 :L T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCT T0362 53 :PG 1vh5A 75 :EG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 6 number of extra gaps= 0 total=5179 Number of alignments=1108 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 20 :AAGVMHFHQLFRWCHESWEESLESYGLN 1vh5A 49 :PFGLLHGGASVVLAESIGSVAGYLCTEG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIR 1vh5A 122 :KGRLCCSSRLT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5183 Number of alignments=1109 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 17 :DTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 46 :TKQPFGLLHGGASVVLAESIGSVAGYLCT T0362 53 :PG 1vh5A 75 :EG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5188 Number of alignments=1110 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCT T0362 53 :PG 1vh5A 75 :EG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLA 1vh5A 122 :KGRLCCSSRLTTAI Number of specific fragments extracted= 5 number of extra gaps= 0 total=5193 Number of alignments=1111 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCT T0362 53 :PG 1vh5A 75 :EG T0362 63 :EVALPIIHCQADFRRPIHTG 1vh5A 77 :EQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5198 Number of alignments=1112 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAGVMH 1vh5A 1 :LIWKRKITLEALNAMGEGN T0362 26 :FHQLFRWCHESWEESLESYGLNPADIFP 1vh5A 46 :TKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5203 Number of alignments=1113 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)W6 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 7 :LLLRRVVRFGDTDAAG 1vh5A 1 :LIWKRKITLEALNAMG T0362 26 :FHQLFRWCHESWEESLESYGLNPADIF 1vh5A 46 :TKQPFGLLHGGASVVLAESIGSVAGYL T0362 59 :EVTPEVALPIIHCQADFRRPIHTG 1vh5A 73 :CTEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5208 Number of alignments=1114 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)E4 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 5 :NWLLLRRV 1vh5A 1 :LIWKRKIT T0362 13 :VRFGDT 1vh5A 26 :IRFEHI T0362 20 :AAGVMH 1vh5A 49 :PFGLLH T0362 34 :HESWEESLESYGLNPADIF 1vh5A 55 :GGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 7 number of extra gaps= 0 total=5215 Number of alignments=1115 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N2 because first residue in template chain is (1vh5A)S0 Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 3 :P 1vh5A 1 :L T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIH 1vh5A 74 :TEGEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5220 Number of alignments=1116 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 89 :LRPERLNPNSFQVHFEFRC 1vh5A 102 :CKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5222 Number of alignments=1117 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 40 :SLESYGLNPADIF 1vh5A 60 :VLAESIGSVAGYL T0362 59 :EVTPEVALPIIHCQADFRRPIHTG 1vh5A 73 :CTEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5226 Number of alignments=1118 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set T0362 35 :ESWEESLESYGLNPADIF 1vh5A 56 :GASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIHTG 1vh5A 74 :TEGEQKVVGLEINANHVRSAREG T0362 84 :ALAMELRPERLNPNSFQVHFEFRC 1vh5A 97 :RVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLA 1vh5A 122 :KGRLCCSSRLTTAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5230 Number of alignments=1119 # 1vh5A read from 1vh5A/merged-a2m # found chain 1vh5A in training set Warning: unaligning (T0362)N123 because last residue in template chain is (1vh5A)E137 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 1vh5A 33 :DDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC T0362 60 :VTPEVALPIIHCQADFRRPIH 1vh5A 74 :TEGEQKVVGLEINANHVRSAR T0362 82 :GDALAMELRPERLNPNSFQVHFEFRC 1vh5A 95 :EGRVRGVCKPLHLGSRHQVWQIEIFD T0362 108 :EEQIAAHALIRHLAI 1vh5A 122 :KGRLCCSSRLTTAIL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5234 Number of alignments=1120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h4uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0362 read from 2h4uA/merged-a2m # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)G135 because last residue in template chain is (2h4uA)G139 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2h4uA 32 :SAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 74 :CTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALIR 2h4uA 124 :ATGKLIAQGRHT T0362 132 :LPE 2h4uA 136 :KHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5238 Number of alignments=1121 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALIR 2h4uA 124 :ATGKLIAQGRHT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5241 Number of alignments=1122 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 74 :CTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALI 2h4uA 124 :ATGKLIAQGRH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5244 Number of alignments=1123 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLE 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHAL 2h4uA 124 :ATGKLIAQGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5247 Number of alignments=1124 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 1 :MN 2h4uA 25 :LG T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 76 :ERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALIR 2h4uA 124 :ATGKLIAQGRHT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5251 Number of alignments=1125 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 76 :ERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALIR 2h4uA 124 :ATGKLIAQGRHT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5254 Number of alignments=1126 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 76 :ERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALI 2h4uA 124 :ATGKLIAQGRH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5257 Number of alignments=1127 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 61 :TPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2h4uA 76 :ERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLT T0362 107 :CEEQIAAHALI 2h4uA 124 :ATGKLIAQGRH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5260 Number of alignments=1128 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)A124 because last residue in template chain is (2h4uA)G139 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2h4uA 32 :SAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTE T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2h4uA 77 :RGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5262 Number of alignments=1129 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 8 :LLRRVVRF 2h4uA 26 :GKITLVSA T0362 16 :GDTDAAGVMHFHQLFRWCHESWE 2h4uA 47 :EHTNAIGTLHGGLTATLVDNIST T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAIN 2h4uA 77 :RGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5265 Number of alignments=1130 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 49 :ADIFPGSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 2h4uA 64 :VDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=5266 Number of alignments=1131 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAA 2h4uA 77 :RGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5267 Number of alignments=1132 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 18 :TDAAGVMH 2h4uA 49 :TNAIGTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=5268 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5268 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 2 :NPENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 33 :AAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5271 Number of alignments=1133 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 34 :APGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5274 Number of alignments=1134 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2h4uA)R19 Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :P 2h4uA 20 :N T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5278 Number of alignments=1135 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2h4uA)R19 Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :P 2h4uA 20 :N T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5282 Number of alignments=1136 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIR 2h4uA 125 :TGKLIAQGRHT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5285 Number of alignments=1137 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALI 2h4uA 125 :TGKLIAQGRH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5288 Number of alignments=1138 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRH 2h4uA 125 :TGKLIAQGRHTK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5291 Number of alignments=1139 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHL 2h4uA 125 :TGKLIAQGRHTKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5294 Number of alignments=1140 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2h4uA)R19 Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :P 2h4uA 20 :N T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5298 Number of alignments=1141 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5301 Number of alignments=1142 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2h4uA)R19 Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :P 2h4uA 20 :N T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 58 :SEVTPEV 2h4uA 76 :ERGAPGV T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 83 :SVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 5 number of extra gaps= 0 total=5306 Number of alignments=1143 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2h4uA)R19 Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 3 :P 2h4uA 20 :N T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5310 Number of alignments=1144 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIR 2h4uA 125 :TGKLIAQGRHT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5313 Number of alignments=1145 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 5 :NWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 36 :GKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALI 2h4uA 125 :TGKLIAQGRH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5316 Number of alignments=1146 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT T0362 58 :SEVTPEV 2h4uA 76 :ERGAPGV T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 83 :SVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRH 2h4uA 125 :TGKLIAQGRHTK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5320 Number of alignments=1147 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLESYGL 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 78 :GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHL 2h4uA 125 :TGKLIAQGRHTKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5323 Number of alignments=1148 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 39 :ICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5326 Number of alignments=1149 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCH 2h4uA 39 :ICEMKVEEEHTNAIGTLHGGLTATLVD T0362 44 :YGLNPADIF 2h4uA 66 :NISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5330 Number of alignments=1150 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 39 :ICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5333 Number of alignments=1151 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set Warning: unaligning (T0362)I122 because last residue in template chain is (2h4uA)G139 T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHLA 2h4uA 125 :TGKLIAQGRHTKHL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5336 Number of alignments=1152 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 39 :ICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIR 2h4uA 125 :TGKLIAQGRHT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5339 Number of alignments=1153 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 8 :LLRRVVRFGDTDAAGVMHFHQLFRWCH 2h4uA 39 :ICEMKVEEEHTNAIGTLHGGLTATLVD T0362 44 :YGLNPADIF 2h4uA 66 :NISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALI 2h4uA 125 :TGKLIAQGRH Number of specific fragments extracted= 4 number of extra gaps= 0 total=5343 Number of alignments=1154 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 7 :LLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 38 :VICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRH 2h4uA 125 :TGKLIAQGRHTK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5346 Number of alignments=1155 # 2h4uA read from 2h4uA/merged-a2m # found chain 2h4uA in template set T0362 4 :ENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWEESLES 2h4uA 35 :PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLC T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2h4uA 75 :TERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTN T0362 108 :EEQIAAHALIRHL 2h4uA 125 :TGKLIAQGRHTKH Number of specific fragments extracted= 3 number of extra gaps= 0 total=5349 Number of alignments=1156 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fs2A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fs2A expands to /projects/compbio/data/pdb/2fs2.pdb.gz 2fs2A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0362 read from 2fs2A/merged-a2m # 2fs2A read from 2fs2A/merged-a2m # adding 2fs2A to template set # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNPENWLLLR 2fs2A 28 :SMDEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAH 2fs2A 117 :QQQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5355 Number of alignments=1157 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNPENWLLLR 2fs2A 28 :SMDEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAH 2fs2A 117 :QQQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5361 Number of alignments=1158 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAH 2fs2A 117 :QQQKTVAL T0362 117 :I 2fs2A 127 :G Number of specific fragments extracted= 6 number of extra gaps= 3 total=5367 Number of alignments=1159 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFR 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIV T0362 107 :CEEQIAAH 2fs2A 117 :QQQKTVAL T0362 117 :I 2fs2A 127 :G Number of specific fragments extracted= 6 number of extra gaps= 3 total=5373 Number of alignments=1160 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNPENWLLLR 2fs2A 28 :SMDEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5379 Number of alignments=1161 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5385 Number of alignments=1162 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :I 2fs2A 127 :G Number of specific fragments extracted= 6 number of extra gaps= 3 total=5391 Number of alignments=1163 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL Number of specific fragments extracted= 5 number of extra gaps= 3 total=5396 Number of alignments=1164 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)H25 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNPENWLLLRRVVRFGDTDAAGV 2fs2A 15 :NDACAKALGIDIISMDEGFAVVT T0362 26 :FHQLFRWCHE 2fs2A 40 :VTAQMLNGHQ T0362 36 :SWEESLESYGLNPA 2fs2A 58 :SLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQ T0362 110 :QIAAH 2fs2A 120 :KTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 7 number of extra gaps= 4 total=5403 Number of alignments=1165 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M24 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)H25 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNPENWLLLRRVVRFGDTDAAGV 2fs2A 15 :NDACAKALGIDIISMDEGFAVVT T0362 26 :FHQLFRWCHE 2fs2A 40 :VTAQMLNGHQ T0362 36 :SWEESLESYGLNPA 2fs2A 58 :SLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQ T0362 110 :QIAAH 2fs2A 120 :KTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 7 number of extra gaps= 4 total=5410 Number of alignments=1166 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 69 :IHCQ 2fs2A 78 :SACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQ 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=5412 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEE 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=5414 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 71 :CQ 2fs2A 80 :CT T0362 75 :FRRPIHTGDAL 2fs2A 84 :FLRPGFAGDTL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5416 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 68 :IIHCQ 2fs2A 77 :ASACT T0362 75 :FRRPIHTGDALAM 2fs2A 84 :FLRPGFAGDTLTA Number of specific fragments extracted= 2 number of extra gaps= 1 total=5418 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :M 2fs2A 29 :M T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 7 number of extra gaps= 4 total=5425 Number of alignments=1167 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNP 2fs2A 29 :MDE T0362 5 :NWLLLR 2fs2A 32 :GFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 7 number of extra gaps= 4 total=5432 Number of alignments=1168 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2fs2A)S0 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQ 2fs2A 73 :LAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5438 Number of alignments=1169 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2fs2A)S0 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLE 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACN T0362 61 :TPEVALPIIHCQ 2fs2A 70 :SQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5444 Number of alignments=1170 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAA 2fs2A 118 :QQKTVA Number of specific fragments extracted= 5 number of extra gaps= 2 total=5449 Number of alignments=1171 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL Number of specific fragments extracted= 5 number of extra gaps= 2 total=5454 Number of alignments=1172 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQ 2fs2A 73 :LAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 3 total=5460 Number of alignments=1173 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLE 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACN T0362 61 :TPEVALPIIHCQ 2fs2A 70 :SQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5466 Number of alignments=1174 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 1 :MNP 2fs2A 12 :MYE T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 7 number of extra gaps= 4 total=5473 Number of alignments=1175 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5479 Number of alignments=1176 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2fs2A)S0 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5485 Number of alignments=1177 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)N2 because first residue in template chain is (2fs2A)S0 Warning: unaligning (T0362)P3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)L1 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5491 Number of alignments=1178 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAA 2fs2A 118 :QQKTVA Number of specific fragments extracted= 5 number of extra gaps= 2 total=5496 Number of alignments=1179 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 4 :ENWLLLR 2fs2A 31 :EGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL Number of specific fragments extracted= 5 number of extra gaps= 2 total=5501 Number of alignments=1180 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 3 total=5507 Number of alignments=1181 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESY 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQ T0362 63 :EVALPIIHCQ 2fs2A 72 :GLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5513 Number of alignments=1182 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)L1 Warning: unaligning (T0362)N2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)L1 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 3 :PENWL 2fs2A 2 :SHKAW T0362 8 :LLR 2fs2A 35 :VVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHES 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTA T0362 48 :PADIF 2fs2A 64 :FAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAA 2fs2A 118 :QQKTVA T0362 124 :A 2fs2A 124 :L T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 9 number of extra gaps= 4 total=5522 Number of alignments=1183 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)L1 Warning: unaligning (T0362)N2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)L1 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)Q125 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)C130 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A131 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 3 :PENWLLLRRVVRFGDTDA 2fs2A 2 :SHKAWQNAHAMYENDACA T0362 21 :AGV 2fs2A 22 :LGI T0362 24 :MHFHQLFRWCHESW 2fs2A 51 :CHGGQLFSLADTAF T0362 47 :NP 2fs2A 65 :AY T0362 58 :SEVTPEVALPIIHCQ 2fs2A 67 :ACNSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 109 :EQIA 2fs2A 118 :QQKT T0362 122 :INA 2fs2A 122 :VAL T0362 127 :RHR 2fs2A 127 :GKS Number of specific fragments extracted= 9 number of extra gaps= 3 total=5531 Number of alignments=1184 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)L1 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESLESYG 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQ 2fs2A 73 :LAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5537 Number of alignments=1185 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)M1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)L1 Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 Warning: unaligning (T0362)L120 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)R131 Warning: unaligning (T0362)A121 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)R131 T0362 3 :PENWLLLR 2fs2A 30 :DEGFAVVT T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 4 total=5543 Number of alignments=1186 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 61 :TPEVALPIIHCQ 2fs2A 70 :SQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAA 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTV Number of specific fragments extracted= 2 number of extra gaps= 1 total=5545 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 109 :EQI 2fs2A 118 :QQK Number of specific fragments extracted= 3 number of extra gaps= 1 total=5548 Number of alignments=1187 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 26 :FHQLFRWCHESWEESLESYG 2fs2A 53 :GGQLFSLADTAFAYACNSQG T0362 64 :VALPIIHCQ 2fs2A 73 :LAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 5 number of extra gaps= 2 total=5553 Number of alignments=1188 # 2fs2A read from 2fs2A/merged-a2m # found chain 2fs2A in template set Warning: unaligning (T0362)R11 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)T39 Warning: unaligning (T0362)V12 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)T39 Warning: unaligning (T0362)A73 because of BadResidue code BAD_PEPTIDE in next template residue (2fs2A)D83 Warning: unaligning (T0362)D74 because of BadResidue code BAD_PEPTIDE at template residue (2fs2A)D83 Warning: unaligning (T0362)A115 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2fs2A)R126 Warning: unaligning (T0362)L116 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2fs2A)R126 T0362 10 :R 2fs2A 37 :T T0362 13 :VRFGDTDAAGVMHFHQLFRWCHESWEESL 2fs2A 40 :VTAQMLNGHQSCHGGQLFSLADTAFAYAC T0362 60 :VTPEVALPIIHCQ 2fs2A 69 :NSQGLAAVASACT T0362 75 :FRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 2fs2A 84 :FLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN T0362 108 :EEQIAAH 2fs2A 118 :QQKTVAL T0362 117 :IRH 2fs2A 127 :GKS Number of specific fragments extracted= 6 number of extra gaps= 3 total=5559 Number of alignments=1189 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c8uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c8uA expands to /projects/compbio/data/pdb/1c8u.pdb.gz 1c8uA:# T0362 read from 1c8uA/merged-a2m # 1c8uA read from 1c8uA/merged-a2m # adding 1c8uA to template set # found chain 1c8uA in template set Warning: unaligning (T0362)D19 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)A20 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)A21 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)G22 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 3 :PENWLLLRRVVRFGD 1c8uA 7 :NLLTLLNLEKIEEGL T0362 18 :T 1c8uA 28 :D T0362 23 :VMHFHQLFRWCHESWEESL 1c8uA 33 :QVFGGQVVGQALYAAKETV T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1c8uA 54 :ERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQ T0362 108 :EEQIAAHALIRHLAINAQT 1c8uA 98 :GKPIFYMTASFQAPEAGFE T0362 127 :RHRCAL 1c8uA 121 :MPSAPA T0362 133 :PEGIDRWLEASG 1c8uA 238 :PFNLNEWLLYSV Number of specific fragments extracted= 7 number of extra gaps= 1 total=5566 Number of alignments=1190 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)A20 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)A21 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)G22 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 7 :LLLRRVVRFG 1c8uA 11 :LLNLEKIEEG T0362 23 :VMHFHQLFRWCHESWEESL 1c8uA 33 :QVFGGQVVGQALYAAKETV T0362 65 :ALPIIHCQADFRRPIHTGDALAMELRPERLNPNSF 1c8uA 54 :ERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFS Number of specific fragments extracted= 3 number of extra gaps= 1 total=5569 Number of alignments=1191 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)Q28 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)L29 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)F30 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 1 :MNP 1c8uA 2 :SQA T0362 4 :ENWLLLRRVVRFGDTDAAGV 1c8uA 6 :KNLLTLLNLEKIEEGLFRGQ T0362 25 :HFH 1c8uA 26 :SED T0362 32 :WCH 1c8uA 33 :QVF T0362 35 :ESWEES 1c8uA 49 :ETVPEE T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCAL 1c8uA 55 :RLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTM T0362 133 :PEGIDRWLEASGVGKIGSI 1c8uA 145 :PPVLKDKFICDRPLEVRPV Number of specific fragments extracted= 7 number of extra gaps= 1 total=5576 Number of alignments=1192 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)Q28 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)L29 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)F30 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 1 :MNP 1c8uA 2 :SQA T0362 4 :ENWLLLRRVVRFGDTDAAGV 1c8uA 6 :KNLLTLLNLEKIEEGLFRGQ T0362 25 :HFH 1c8uA 26 :SED T0362 32 :WCHESWEES 1c8uA 33 :QVFGGQVVG T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGI 1c8uA 55 :RLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAP T0362 137 :D 1c8uA 149 :K T0362 138 :RWLEASGV 1c8uA 180 :VWIRANGS T0362 146 :GKIG 1c8uA 219 :FLEP T0362 150 :SI 1c8uA 228 :TI Number of specific fragments extracted= 9 number of extra gaps= 1 total=5585 Number of alignments=1193 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPE 1c8uA 55 :RLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=5586 Number of alignments=1194 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 63 :EVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEG 1c8uA 52 :PEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5587 Number of alignments=1195 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)Q28 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)L29 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)F30 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)R31 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMH 1c8uA 3 :QALKNLLTLLNLEKIEEGLFRGQSE T0362 27 :H 1c8uA 28 :D T0362 32 :WCHESWEESL 1c8uA 33 :QVFGGQVVGQ T0362 54 :GSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEG 1c8uA 43 :ALYAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSA T0362 136 :IDRWLEASGVGKIGSI 1c8uA 211 :ALQPHGIGFLEPGIQI Number of specific fragments extracted= 5 number of extra gaps= 1 total=5592 Number of alignments=1196 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)W37 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)E38 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)E39 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 T0362 1 :MNPENWLLLRRVVRFGDT 1c8uA 3 :QALKNLLTLLNLEKIEEG T0362 29 :LFRWCHE 1c8uA 21 :LFRGQSE T0362 40 :S 1c8uA 41 :G T0362 66 :LPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDR 1c8uA 55 :RLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAPAP T0362 139 :W 1c8uA 130 :L T0362 140 :LEASGV 1c8uA 158 :LEVRPV T0362 146 :G 1c8uA 221 :E T0362 147 :KIGSI 1c8uA 272 :LVAST Number of specific fragments extracted= 8 number of extra gaps= 1 total=5600 Number of alignments=1197 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 59 :EVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPE 1c8uA 48 :KETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=5601 Number of alignments=1198 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 62 :PEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGI 1c8uA 51 :VPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=5602 Number of alignments=1199 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)F15 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)G16 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)D17 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)T18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 1 :MNPENWLLLRRVVR 1c8uA 15 :EKIEEGLFRGQSED T0362 19 :DAAGVMHFHQLFRWCHESWEESLESYGLNPADIFPGSRKSEVTPEVAL 1c8uA 33 :QVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVET T0362 67 :PIIHCQADFRRPI 1c8uA 100 :PIFYMTASFQAPE T0362 82 :GDALAMELRPERLNPNSFQ 1c8uA 113 :AGFEHQKTMPSAPAPDGLP T0362 101 :VHFEFRCEEQIAAHALIRHLAINAQT 1c8uA 133 :ETQIAQSLAHLLPPVLKDKFICDRPL T0362 127 :RHRCALPEGIDRWLEASGVGKIGSI 1c8uA 194 :VHQYLLGYASDLNFLPVALQPHGIG Number of specific fragments extracted= 6 number of extra gaps= 1 total=5608 Number of alignments=1200 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)H27 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)Q28 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)L29 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)F30 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 1 :MNPENWLLLRRVVRFGDTDAAGVMHF 1c8uA 3 :QALKNLLTLLNLEKIEEGLFRGQSED T0362 31 :RW 1c8uA 33 :QV T0362 33 :CHESWEESLESYGLNPADIF 1c8uA 52 :PEERLVHSFHSYFLRPGDSK T0362 53 :PGSRKSEVTPEV 1c8uA 83 :DGNSFSARRVAA T0362 65 :ALPIIHCQADFRRPI 1c8uA 98 :GKPIFYMTASFQAPE T0362 82 :GDALAMELRPERLNPNSFQ 1c8uA 113 :AGFEHQKTMPSAPAPDGLP T0362 101 :VHFEFRC 1c8uA 156 :RPLEVRP T0362 108 :EEQIAAHALIRH 1c8uA 185 :NGSVPDDLRVHQ T0362 120 :LAI 1c8uA 199 :LGY T0362 123 :NAQTRHRCAL 1c8uA 210 :VALQPHGIGF T0362 133 :PEGIDRWLEASG 1c8uA 238 :PFNLNEWLLYSV T0362 145 :VGKI 1c8uA 258 :RGFV T0362 149 :GS 1c8uA 266 :YT Number of specific fragments extracted= 13 number of extra gaps= 1 total=5621 Number of alignments=1201 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 67 :PIIHCQADFRRPI 1c8uA 100 :PIFYMTASFQAPE T0362 82 :GDALAMELRPERLNPNSFQ 1c8uA 113 :AGFEHQKTMPSAPAPDGLP Number of specific fragments extracted= 2 number of extra gaps= 0 total=5623 Number of alignments=1202 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5623 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 40 :SLESYGLNPAD 1c8uA 59 :SFHSYFLRPGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=5624 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5624 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)T126 because last residue in template chain is (1c8uA)N286 T0362 1 :MNPENWLLLRRVVRFGDTD 1c8uA 148 :LKDKFICDRPLEVRPVEFH T0362 20 :AAGVMHFHQLFRWCH 1c8uA 169 :LKGHVAEPHRQVWIR T0362 35 :ESWEESLESYGLNPADIFPGSRKS 1c8uA 196 :QYLLGYASDLNFLPVALQPHGIGF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1c8uA 220 :LEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYT T0362 108 :EEQIAAHALIRHLAIN 1c8uA 269 :DGVLVASTVQEGVMRN T0362 125 :Q 1c8uA 285 :H Number of specific fragments extracted= 6 number of extra gaps= 0 total=5630 Number of alignments=1203 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)T126 because last residue in template chain is (1c8uA)N286 T0362 1 :MNPENWLLLRRVVRFGDT 1c8uA 148 :LKDKFICDRPLEVRPVEF T0362 19 :DAAGVMHFHQLFRWCH 1c8uA 168 :PLKGHVAEPHRQVWIR T0362 35 :ESWEESLES 1c8uA 191 :DLRVHQYLL T0362 44 :YGLNPADIFPGSRKS 1c8uA 205 :LNFLPVALQPHGIGF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1c8uA 220 :LEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYT T0362 108 :EEQIAAHALIRHLAIN 1c8uA 269 :DGVLVASTVQEGVMRN T0362 125 :Q 1c8uA 285 :H Number of specific fragments extracted= 7 number of extra gaps= 0 total=5637 Number of alignments=1204 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1c8uA)S2 Warning: unaligning (T0362)T18 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)D19 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)A21 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)G22 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 3 :P 1c8uA 3 :Q T0362 4 :ENWLLLR 1c8uA 19 :EGLFRGQ T0362 15 :FGD 1c8uA 26 :SED T0362 23 :VMHFHQLFRWCHESWEES 1c8uA 33 :QVFGGQVVGQALYAAKET T0362 60 :VTPEV 1c8uA 51 :VPEER T0362 67 :PIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1c8uA 56 :LVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAP T0362 123 :NAQTRHRCALPEGI 1c8uA 117 :HQKTMPSAPAPDGL T0362 137 :DRWLEASGVGKIG 1c8uA 134 :TQIAQSLAHLLPP Number of specific fragments extracted= 8 number of extra gaps= 1 total=5645 Number of alignments=1205 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set Warning: unaligning (T0362)N2 because first residue in template chain is (1c8uA)S2 Warning: unaligning (T0362)T18 because of BadResidue code BAD_PEPTIDE in next template residue (1c8uA)G30 Warning: unaligning (T0362)D19 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)G30 Warning: unaligning (T0362)A21 because of BadResidue code BAD_PEPTIDE at template residue (1c8uA)L31 Warning: unaligning (T0362)G22 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c8uA)R32 T0362 3 :P 1c8uA 3 :Q T0362 4 :ENWLLLR 1c8uA 19 :EGLFRGQ T0362 15 :FGD 1c8uA 26 :SED T0362 23 :VMHFHQLFRWCHESWEE 1c8uA 33 :QVFGGQVVGQALYAAKE T0362 44 :Y 1c8uA 50 :T T0362 60 :VTPEVA 1c8uA 51 :VPEERL T0362 68 :IIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAI 1c8uA 57 :VHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAP T0362 124 :AQTRHRCALPEG 1c8uA 118 :QKTMPSAPAPDG T0362 136 :IDRWLEASGVGKIG 1c8uA 133 :ETQIAQSLAHLLPP Number of specific fragments extracted= 9 number of extra gaps= 1 total=5654 Number of alignments=1206 # 1c8uA read from 1c8uA/merged-a2m # found chain 1c8uA in template set T0362 44 :YGLNP 1c8uA 215 :HGIGF T0362 60 :VTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRC 1c8uA 220 :LEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSA