# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0359/ # command:# Making conformation for sequence T0359 numbered 1 through 97 Created new target T0359 from T0359.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0359/ # command:# reading script from file T0359.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0359-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fe5A expands to /projects/compbio/data/pdb/2fe5.pdb.gz 2fe5A:Skipped atom 9, because occupancy 0.3 <= existing 0.700 in 2fe5A Skipped atom 13, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 15, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 17, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 19, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 47, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 51, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 53, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 55, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 57, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 59, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 294, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 296, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 298, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 300, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 302, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 317, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 320, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 431, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 433, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 435, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 437, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 439, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 441, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 443, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 593, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 597, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 599, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fe5A # T0359 read from 2fe5A/T0359-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0359-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fe5A to template set # found chain 2fe5A in template set Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI # choosing archetypes in rotamer library T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1583571042.pdb -s /var/tmp/to_scwrl_1583571042.seq -o /var/tmp/from_scwrl_1583571042.pdb > /var/tmp/scwrl_1583571042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583571042.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0359-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fneA expands to /projects/compbio/data/pdb/2fne.pdb.gz 2fneA:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 2fneA # T0359 read from 2fneA/T0359-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0359-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fneA to template set # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_559301039.pdb -s /var/tmp/to_scwrl_559301039.seq -o /var/tmp/from_scwrl_559301039.pdb > /var/tmp/scwrl_559301039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559301039.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0359-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1g9oA/T0359-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0359-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGY 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGE T0359 30 :LEPSGIFVKSITKSSAVEHDG 1g9oA 32 :KGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=8 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1395132001.pdb -s /var/tmp/to_scwrl_1395132001.seq -o /var/tmp/from_scwrl_1395132001.pdb > /var/tmp/scwrl_1395132001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395132001.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0359-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1tp5A expands to /projects/compbio/data/pdb/1tp5.pdb.gz 1tp5A:# T0359 read from 1tp5A/T0359-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0359-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tp5A to template set # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGY 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=11 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1186090427.pdb -s /var/tmp/to_scwrl_1186090427.seq -o /var/tmp/from_scwrl_1186090427.pdb > /var/tmp/scwrl_1186090427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186090427.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0359-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fcfA expands to /projects/compbio/data/pdb/2fcf.pdb.gz 2fcfA:Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fcfA # T0359 read from 2fcfA/T0359-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0359-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fcfA to template set # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=14 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1974806402.pdb -s /var/tmp/to_scwrl_1974806402.seq -o /var/tmp/from_scwrl_1974806402.pdb > /var/tmp/scwrl_1974806402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974806402.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0359-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1qavA expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavA:# T0359 read from 1qavA/T0359-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0359-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1qavA to template set # found chain 1qavA in template set T0359 2 :MSETFDVELTKNVQ 1qavA 76 :SLQRRRVTVRKADA T0359 16 :GLGITIAGY 1qavA 91 :GLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=17 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1473144499.pdb -s /var/tmp/to_scwrl_1473144499.seq -o /var/tmp/from_scwrl_1473144499.pdb > /var/tmp/scwrl_1473144499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473144499.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h2bA/T0359-2h2bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2h2bA expands to /projects/compbio/data/pdb/2h2b.pdb.gz 2h2bA:# T0359 read from 2h2bA/T0359-2h2bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h2bA read from 2h2bA/T0359-2h2bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2h2bA to template set # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIG 2h2bA 33 :GFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 96 :SV 2h2bA 116 :RT Number of specific fragments extracted= 5 number of extra gaps= 0 total=22 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1739000680.pdb -s /var/tmp/to_scwrl_1739000680.seq -o /var/tmp/from_scwrl_1739000680.pdb > /var/tmp/scwrl_1739000680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739000680.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h3lA/T0359-2h3lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2h3lA expands to /projects/compbio/data/pdb/2h3l.pdb.gz 2h3lA:# T0359 read from 2h3lA/T0359-2h3lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h3lA read from 2h3lA/T0359-2h3lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2h3lA to template set # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 5 :TFDVELTKNV 2h3lA 1321 :EIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=26 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1498617646.pdb -s /var/tmp/to_scwrl_1498617646.seq -o /var/tmp/from_scwrl_1498617646.pdb > /var/tmp/scwrl_1498617646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498617646.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0359-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2f0aA expands to /projects/compbio/data/pdb/2f0a.pdb.gz 2f0aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 2f0aA/T0359-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0359-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f0aA to template set # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=30 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_669908538.pdb -s /var/tmp/to_scwrl_669908538.seq -o /var/tmp/from_scwrl_669908538.pdb > /var/tmp/scwrl_669908538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669908538.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0359-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2f5yA expands to /projects/compbio/data/pdb/2f5y.pdb.gz 2f5yA:Skipped atom 397, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2f5yA # T0359 read from 2f5yA/T0359-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0359-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f5yA to template set # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=34 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1387036158.pdb -s /var/tmp/to_scwrl_1387036158.seq -o /var/tmp/from_scwrl_1387036158.pdb > /var/tmp/scwrl_1387036158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387036158.pdb Number of alignments=10 # command:# reading script from file T0359.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=36 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_12895151.pdb -s /var/tmp/to_scwrl_12895151.seq -o /var/tmp/from_scwrl_12895151.pdb > /var/tmp/scwrl_12895151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12895151.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0359-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fe5A/T0359-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0359-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=38 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1144522534.pdb -s /var/tmp/to_scwrl_1144522534.seq -o /var/tmp/from_scwrl_1144522534.pdb > /var/tmp/scwrl_1144522534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144522534.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=41 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1812282133.pdb -s /var/tmp/to_scwrl_1812282133.seq -o /var/tmp/from_scwrl_1812282133.pdb > /var/tmp/scwrl_1812282133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812282133.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=44 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1328104338.pdb -s /var/tmp/to_scwrl_1328104338.seq -o /var/tmp/from_scwrl_1328104338.pdb > /var/tmp/scwrl_1328104338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328104338.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=47 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1380171691.pdb -s /var/tmp/to_scwrl_1380171691.seq -o /var/tmp/from_scwrl_1380171691.pdb > /var/tmp/scwrl_1380171691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380171691.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNVQG 1qavA 75 :GSLQRRRVTVRKADAG T0359 17 :LGITIAGYIG 1qavA 92 :LGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=50 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1113502214.pdb -s /var/tmp/to_scwrl_1113502214.seq -o /var/tmp/from_scwrl_1113502214.pdb > /var/tmp/scwrl_1113502214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113502214.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h2bA read from 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGD 2h2bA 33 :GFGIAISGGRDN T0359 28 :KKLEPSGIFVKSITKSSAVE 2h2bA 47 :FQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=54 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_860516127.pdb -s /var/tmp/to_scwrl_860516127.seq -o /var/tmp/from_scwrl_860516127.pdb > /var/tmp/scwrl_860516127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860516127.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h3lA read from 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=58 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_777720504.pdb -s /var/tmp/to_scwrl_777720504.seq -o /var/tmp/from_scwrl_777720504.pdb > /var/tmp/scwrl_777720504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777720504.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=62 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1543755628.pdb -s /var/tmp/to_scwrl_1543755628.seq -o /var/tmp/from_scwrl_1543755628.pdb > /var/tmp/scwrl_1543755628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543755628.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0359-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2f5yA/T0359-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0359-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIA 2f5yA 16 :YRQITIPRGKDGFGFTIC T0359 31 :EPSGIFVKSITKSSAVEHDG 2f5yA 34 :CDSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=66 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1722060048.pdb -s /var/tmp/to_scwrl_1722060048.seq -o /var/tmp/from_scwrl_1722060048.pdb > /var/tmp/scwrl_1722060048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722060048.pdb Number of alignments=20 # command:# reading script from file T0359.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=68 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1455590963.pdb -s /var/tmp/to_scwrl_1455590963.seq -o /var/tmp/from_scwrl_1455590963.pdb > /var/tmp/scwrl_1455590963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455590963.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0359-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1g9oA/T0359-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0359-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=71 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_328298285.pdb -s /var/tmp/to_scwrl_328298285.seq -o /var/tmp/from_scwrl_328298285.pdb > /var/tmp/scwrl_328298285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328298285.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0359-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fneA/T0359-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0359-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=73 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_70636429.pdb -s /var/tmp/to_scwrl_70636429.seq -o /var/tmp/from_scwrl_70636429.pdb > /var/tmp/scwrl_70636429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70636429.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0359-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1tp5A/T0359-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0359-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=76 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_136495343.pdb -s /var/tmp/to_scwrl_136495343.seq -o /var/tmp/from_scwrl_136495343.pdb > /var/tmp/scwrl_136495343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136495343.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0359-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fcfA/T0359-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0359-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 2 :MSETFDVELT 2fcfA 1146 :SMQPRRVELW T0359 12 :K 2fcfA 1157 :E T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=80 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1472576334.pdb -s /var/tmp/to_scwrl_1472576334.seq -o /var/tmp/from_scwrl_1472576334.pdb > /var/tmp/scwrl_1472576334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472576334.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h3lA/T0359-2h3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h3lA/T0359-2h3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h3lA read from 2h3lA/T0359-2h3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h3lA in template set T0359 2 :MSETFDVELTKNVQ 2h3lA 1318 :AKQEIRVRVEKDPE T0359 17 :LGITIAGYIG 2h3lA 1332 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=84 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_402903177.pdb -s /var/tmp/to_scwrl_402903177.seq -o /var/tmp/from_scwrl_402903177.pdb > /var/tmp/scwrl_402903177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402903177.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h2bA/T0359-2h2bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h2bA/T0359-2h2bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h2bA read from 2h2bA/T0359-2h2bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTK 2h2bA 18 :IWEQHTVTLHR T0359 13 :NVQGLGITIAGYIG 2h2bA 30 :PGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=88 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1329202899.pdb -s /var/tmp/to_scwrl_1329202899.seq -o /var/tmp/from_scwrl_1329202899.pdb > /var/tmp/scwrl_1329202899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329202899.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1wf7A expands to /projects/compbio/data/pdb/1wf7.pdb.gz 1wf7A:# T0359 read from 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1wf7A to template set # found chain 1wf7A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1wf7A 3 :SGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=91 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1503885237.pdb -s /var/tmp/to_scwrl_1503885237.seq -o /var/tmp/from_scwrl_1503885237.pdb > /var/tmp/scwrl_1503885237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503885237.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/T0359-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1n99A expands to /projects/compbio/data/pdb/1n99.pdb.gz 1n99A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 1n99A/T0359-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1n99A read from 1n99A/T0359-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1n99A to template set # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELT 1n99A 113 :REVILC T0359 12 :KNVQGLGITIAGY 1n99A 120 :DQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG T0359 84 :TVLL 1n99A 185 :KITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=97 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1219407970.pdb -s /var/tmp/to_scwrl_1219407970.seq -o /var/tmp/from_scwrl_1219407970.pdb > /var/tmp/scwrl_1219407970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219407970.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0359-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2f0aA/T0359-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0359-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVEL 2f0aA 252 :IITVTL T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=101 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2416949.pdb -s /var/tmp/to_scwrl_2416949.seq -o /var/tmp/from_scwrl_2416949.pdb > /var/tmp/scwrl_2416949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2416949.pdb Number of alignments=30 # command:# reading script from file T0359.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0359-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=103 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_12260289.pdb -s /var/tmp/to_scwrl_12260289.seq -o /var/tmp/from_scwrl_12260289.pdb > /var/tmp/scwrl_12260289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12260289.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0359-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=105 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_655495367.pdb -s /var/tmp/to_scwrl_655495367.seq -o /var/tmp/from_scwrl_655495367.pdb > /var/tmp/scwrl_655495367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655495367.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0359-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=108 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_561717988.pdb -s /var/tmp/to_scwrl_561717988.seq -o /var/tmp/from_scwrl_561717988.pdb > /var/tmp/scwrl_561717988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561717988.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0359-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=111 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1407392291.pdb -s /var/tmp/to_scwrl_1407392291.seq -o /var/tmp/from_scwrl_1407392291.pdb > /var/tmp/scwrl_1407392291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407392291.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0359-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=114 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1841585794.pdb -s /var/tmp/to_scwrl_1841585794.seq -o /var/tmp/from_scwrl_1841585794.pdb > /var/tmp/scwrl_1841585794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841585794.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0359-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNVQG 1qavA 75 :GSLQRRRVTVRKADAG T0359 17 :LGITIAGYIG 1qavA 92 :LGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=117 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_389040743.pdb -s /var/tmp/to_scwrl_389040743.seq -o /var/tmp/from_scwrl_389040743.pdb > /var/tmp/scwrl_389040743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389040743.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h2bA read from 2h2bA/T0359-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGD 2h2bA 33 :GFGIAISGGRDN T0359 28 :KKLEPSGIFVKSITKSSAVE 2h2bA 47 :FQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=121 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_733053144.pdb -s /var/tmp/to_scwrl_733053144.seq -o /var/tmp/from_scwrl_733053144.pdb > /var/tmp/scwrl_733053144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_733053144.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2h3lA read from 2h3lA/T0359-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=125 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1433102828.pdb -s /var/tmp/to_scwrl_1433102828.seq -o /var/tmp/from_scwrl_1433102828.pdb > /var/tmp/scwrl_1433102828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433102828.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0359-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=129 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1887658389.pdb -s /var/tmp/to_scwrl_1887658389.seq -o /var/tmp/from_scwrl_1887658389.pdb > /var/tmp/scwrl_1887658389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887658389.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0359 read from 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0359-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1wf7A 3 :SGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=132 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1402961681.pdb -s /var/tmp/to_scwrl_1402961681.seq -o /var/tmp/from_scwrl_1402961681.pdb > /var/tmp/scwrl_1402961681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1402961681.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0359//projects/compbio/experiments/protein-predict/casp7/constraints/T0359/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0359//projects/compbio/experiments/protein-predict/casp7/constraints/T0359/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0359/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0359/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vj6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vj6A expands to /projects/compbio/data/pdb/1vj6.pdb.gz 1vj6A:# T0359 read from 1vj6A/merged-a2m # 1vj6A read from 1vj6A/merged-a2m # adding 1vj6A to template set # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 3 :SETFDVELTKNVQGLGITIAGYI 1vj6A 11 :GDTFEVELAKTDGSLGISVTGGV T0359 27 :DKKLEPSGIFVKSITK 1vj6A 34 :NTSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 5 number of extra gaps= 3 total=137 Number of alignments=41 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1vj6A 11 :GDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITK 1vj6A 35 :TSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE Number of specific fragments extracted= 5 number of extra gaps= 3 total=142 Number of alignments=42 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=147 Number of alignments=43 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=152 Number of alignments=44 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 5 number of extra gaps= 3 total=157 Number of alignments=45 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1vj6A 10 :PGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK Number of specific fragments extracted= 5 number of extra gaps= 3 total=162 Number of alignments=46 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0359)T95 because last residue in template chain is (1vj6A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITK 1vj6A 35 :TSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=167 Number of alignments=47 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0359)T95 because last residue in template chain is (1vj6A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITK 1vj6A 35 :TSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=172 Number of alignments=48 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITK 1vj6A 35 :TSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 5 number of extra gaps= 3 total=177 Number of alignments=49 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1vj6A 10 :PGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITK 1vj6A 35 :TSVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 5 number of extra gaps= 3 total=182 Number of alignments=50 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0359)T95 because last residue in template chain is (1vj6A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=187 Number of alignments=51 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0359)T95 because last residue in template chain is (1vj6A)P102 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1vj6A 10 :PGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=192 Number of alignments=52 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1vj6A 10 :PGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 5 number of extra gaps= 3 total=197 Number of alignments=53 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1vj6A 12 :DTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITK 1vj6A 36 :SVRHGGIYVKAIIP T0359 45 :AVE 1vj6A 52 :AAE T0359 50 :GR 1vj6A 57 :GR T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 5 number of extra gaps= 3 total=202 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2fneA/merged-a2m # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYI 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1978 :GSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=204 Number of alignments=55 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=206 Number of alignments=56 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYI 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1978 :GSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=208 Number of alignments=57 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=210 Number of alignments=58 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=212 Number of alignments=59 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=214 Number of alignments=60 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=216 Number of alignments=61 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=218 Number of alignments=62 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=220 Number of alignments=63 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 2 :M 2fneA 1955 :P T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2fneA 1956 :QCKSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 3 number of extra gaps= 0 total=223 Number of alignments=64 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 8 :VELTKNVQGLGITIAGYIG 2fneA 1960 :ITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=225 Number of alignments=65 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 6 :FDVELTKNVQGLGITIAGYIG 2fneA 1958 :KSITLERGPDGLGFSIVGGYG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fneA 1979 :SPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=227 Number of alignments=66 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKLEPS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPHGDLP T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1986 :IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=229 Number of alignments=67 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPHG T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1983 :DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=231 Number of alignments=68 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=233 Number of alignments=69 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=235 Number of alignments=70 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=237 Number of alignments=71 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=239 Number of alignments=72 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=241 Number of alignments=73 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=243 Number of alignments=74 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=245 Number of alignments=75 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=247 Number of alignments=76 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=249 Number of alignments=77 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=251 Number of alignments=78 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=253 Number of alignments=79 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=255 Number of alignments=80 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS Number of specific fragments extracted= 2 number of extra gaps= 0 total=257 Number of alignments=81 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=259 Number of alignments=82 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=261 Number of alignments=83 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=263 Number of alignments=84 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=265 Number of alignments=85 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=267 Number of alignments=86 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=269 Number of alignments=87 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=271 Number of alignments=88 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 8 :VELTKNVQGLGITIAGYIGD 2fneA 1960 :ITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=273 Number of alignments=89 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 2fneA 1957 :CKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 2 number of extra gaps= 0 total=275 Number of alignments=90 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=277 Number of alignments=91 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fneA)M1954 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fneA 1980 :PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 2 number of extra gaps= 0 total=279 Number of alignments=92 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bygA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bygA expands to /projects/compbio/data/pdb/2byg.pdb.gz 2bygA:# T0359 read from 2bygA/merged-a2m # 2bygA read from 2bygA/merged-a2m # adding 2bygA to template set # found chain 2bygA in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKLEPSG 2bygA 193 :EIKLFKGPKGLGFSIAGGVGNQHIPGDN T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 2bygA 222 :IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=281 Number of alignments=93 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 6 :FDVELTKNVQGLGITIAGYIGDKKLEP 2bygA 192 :VEIKLFKGPKGLGFSIAGGVGNQHIPG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 2bygA 220 :NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=283 Number of alignments=94 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT Number of specific fragments extracted= 2 number of extra gaps= 0 total=285 Number of alignments=95 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT Number of specific fragments extracted= 2 number of extra gaps= 0 total=287 Number of alignments=96 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=289 Number of alignments=97 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 2bygA 190 :TVVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=291 Number of alignments=98 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (2bygA)Y283 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=293 Number of alignments=99 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (2bygA)Y283 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=295 Number of alignments=100 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (2bygA)Y283 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=297 Number of alignments=101 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT Number of specific fragments extracted= 2 number of extra gaps= 0 total=299 Number of alignments=102 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (2bygA)Y283 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 2bygA 190 :TVVEIKLFKGPKGLGFSIAGGVGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2bygA 217 :PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=301 Number of alignments=103 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (2bygA)Y283 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 2bygA 190 :TVVEIKLFKGPKGLGFSIAGGVGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2bygA 217 :PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=303 Number of alignments=104 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 2bygA 217 :PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=305 Number of alignments=105 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 2bygA 217 :PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG Number of specific fragments extracted= 2 number of extra gaps= 0 total=307 Number of alignments=106 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y8tA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y8tA expands to /projects/compbio/data/pdb/1y8t.pdb.gz 1y8tA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 1y8tA/merged-a2m # 1y8tA read from 1y8tA/merged-a2m # adding 1y8tA to template set # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)I19 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)S33 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SMSETFDVELTKNVQG 1y8tA 207 :AIPVDQAKRIADELIS T0359 22 :AGYIGDKKL 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 8 number of extra gaps= 8 total=315 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)T189 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 12 :KNVQGLGITIAG 1y8tA 176 :MNAQLVGVNSAI T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 7 number of extra gaps= 7 total=322 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)I19 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)S33 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 8 :VELTKNVQG 1y8tA 214 :KRIADELIS T0359 22 :AGYIGDKKL 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GET 1y8tA 302 :GGS Number of specific fragments extracted= 8 number of extra gaps= 8 total=330 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)I19 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)S33 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 12 :KNVQG 1y8tA 218 :DELIS T0359 22 :AGYIGDKKL 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GE 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 8 total=338 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)I19 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)S33 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SMSETFDVELTKNVQG 1y8tA 207 :AIPVDQAKRIADELIS T0359 22 :AGYIGDKKL 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 8 number of extra gaps= 8 total=346 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)I19 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SMSETFDVE 1y8tA 7 :SVEQVAAKV T0359 10 :LTKNVQG 1y8tA 216 :IADELIS T0359 22 :AGYIGDK 1y8tA 228 :HASLGVQ T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 9 number of extra gaps= 7 total=355 Number of alignments=107 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 17 :LGITIA 1y8tA 231 :LGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GET 1y8tA 302 :GGS Number of specific fragments extracted= 7 number of extra gaps= 7 total=362 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 15 :QG 1y8tA 221 :IS T0359 18 :GITI 1y8tA 232 :GVQV T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 93 :GET 1y8tA 302 :GGS Number of specific fragments extracted= 8 number of extra gaps= 7 total=370 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S1 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)M2 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)T5 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)F6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A55 Warning: unaligning (T0359)I40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)T189 Warning: unaligning (T0359)T41 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T189 Warning: unaligning (T0359)K42 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y8tA)Q198 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 4 :E 1y8tA 32 :E T0359 7 :DVELTKN 1y8tA 35 :GIILSAE T0359 16 :GLGITIAGYIGD 1y8tA 42 :GLILTNNHVIAA T0359 29 :KLEPS 1y8tA 93 :RVQGV T0359 34 :GIFVKS 1y8tA 182 :GVNSAI T0359 46 :VEHDGR 1y8tA 201 :SIGLGF T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTL 1y8tA 290 :GATVALTF T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 10 number of extra gaps= 8 total=380 Number of alignments=108 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)T5 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)F6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)T11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)K12 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)T189 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T189 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y8tA)Q198 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SMSE 1y8tA 15 :VVPS T0359 7 :DVEL 1y8tA 21 :MLET T0359 15 :Q 1y8tA 32 :E T0359 17 :LGITIAG 1y8tA 181 :VGVNSAI T0359 30 :LEPS 1y8tA 201 :SIGL T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 47 :EH 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTL 1y8tA 290 :GATVALTF T0359 93 :GETSV 1y8tA 302 :GGSRT Number of specific fragments extracted= 11 number of extra gaps= 9 total=391 Number of alignments=109 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)T20 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)I21 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 13 :NVQGL 1y8tA 232 :GVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTL 1y8tA 290 :GATVALTF T0359 93 :GET 1y8tA 302 :GGS Number of specific fragments extracted= 7 number of extra gaps= 6 total=398 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTL 1y8tA 290 :GATVALTF T0359 93 :GET 1y8tA 302 :GGS Number of specific fragments extracted= 6 number of extra gaps= 5 total=404 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set T0359 39 :SITKSSAVEHDGRIQIGDQII 1y8tA 201 :SIGLGFAIPVDQAKRIADELI Number of specific fragments extracted= 1 number of extra gaps= 0 total=405 Number of alignments=110 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=405 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)E9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)L10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SM 1y8tA 17 :PS T0359 5 :TFDV 1y8tA 21 :MLET T0359 18 :GITIAGYIGDKKLEPS 1y8tA 35 :GIILSAEGLILTNNHV T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 9 number of extra gaps= 8 total=414 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 5 :TF 1y8tA 17 :PS T0359 9 :ELTK 1y8tA 21 :MLET T0359 15 :Q 1y8tA 32 :E T0359 18 :GITIAGYIGDKKLEP 1y8tA 35 :GIILSAEGLILTNNH T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 10 number of extra gaps= 7 total=424 Number of alignments=111 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 9 :ELTK 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TIAGYIG 1y8tA 35 :GIILSAE T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQ 1y8tA 274 :IN T0359 70 :TNQQAVEVLRHT 1y8tA 276 :SADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 10 number of extra gaps= 7 total=434 Number of alignments=112 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 5 :TF 1y8tA 17 :PS T0359 9 :ELTK 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TIAGYI 1y8tA 35 :GIILSA T0359 32 :PS 1y8tA 41 :EG T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 12 number of extra gaps= 7 total=446 Number of alignments=113 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 7 number of extra gaps= 6 total=453 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 14 :VQGLGITIA 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 7 number of extra gaps= 6 total=460 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 17 :LGITIA 1y8tA 231 :LGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQ 1y8tA 274 :IN T0359 70 :TNQQAVEVLRHT 1y8tA 276 :SADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ET 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=468 Number of alignments=114 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 8 number of extra gaps= 5 total=476 Number of alignments=115 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)E9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)L10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 1 :SM 1y8tA 17 :PS T0359 5 :TFDV 1y8tA 21 :MLET T0359 18 :GITIAGYIGDKKLEPS 1y8tA 35 :GIILSAEGLILTNNHV T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 9 number of extra gaps= 8 total=485 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 5 :TF 1y8tA 17 :PS T0359 9 :ELTK 1y8tA 21 :MLET T0359 15 :Q 1y8tA 32 :E T0359 18 :GITI 1y8tA 35 :GIIL T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 10 number of extra gaps= 8 total=495 Number of alignments=116 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 9 :ELTK 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TI 1y8tA 35 :GI T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQ 1y8tA 274 :IN T0359 70 :TNQQAVEVLRHT 1y8tA 276 :SADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 10 number of extra gaps= 7 total=505 Number of alignments=117 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 9 :ELTK 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TI 1y8tA 35 :GI T0359 22 :AGYIGDKKLEP 1y8tA 92 :VRVQGVSGLTP T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 11 number of extra gaps= 7 total=516 Number of alignments=118 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=522 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0359 14 :VQGLGITIA 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=528 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQ 1y8tA 274 :IN T0359 70 :TNQQAVEVLRHT 1y8tA 276 :SADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 8 number of extra gaps= 5 total=536 Number of alignments=119 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETS 1y8tA 302 :GGS Number of specific fragments extracted= 8 number of extra gaps= 5 total=544 Number of alignments=120 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)S3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)E9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 4 :ETFD 1y8tA 21 :MLET T0359 15 :Q 1y8tA 32 :E T0359 18 :GITIAGYIG 1y8tA 35 :GIILSAEGL T0359 27 :D 1y8tA 236 :T T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETSV 1y8tA 302 :GGSR Number of specific fragments extracted= 10 number of extra gaps= 9 total=554 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)S3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)V8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)E9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)L17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 4 :ETFD 1y8tA 21 :MLET T0359 15 :Q 1y8tA 32 :E T0359 18 :GITIAGYIG 1y8tA 35 :GIILSAEGL T0359 27 :D 1y8tA 236 :T T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETSV 1y8tA 302 :GGSR Number of specific fragments extracted= 10 number of extra gaps= 9 total=564 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)T11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 6 :FDVE 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TIAGYIG 1y8tA 35 :GIILSAE T0359 27 :D 1y8tA 236 :T T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGF 1y8tA 274 :INSA T0359 72 :QQAVEVLRH 1y8tA 278 :DALVAAVRS T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETSV 1y8tA 302 :GGSR Number of specific fragments extracted= 11 number of extra gaps= 8 total=575 Number of alignments=121 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)T5 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0359)F6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0359)T11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0359)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)K29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)L30 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)E31 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)P32 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 7 :DVEL 1y8tA 21 :MLET T0359 17 :L 1y8tA 32 :E T0359 20 :TIAGYIG 1y8tA 35 :GIILSAE T0359 27 :D 1y8tA 236 :T T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ETSV 1y8tA 302 :GGSR Number of specific fragments extracted= 11 number of extra gaps= 8 total=586 Number of alignments=122 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)T11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)N13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 14 :VQGLGITIA 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :E 1y8tA 302 :G Number of specific fragments extracted= 7 number of extra gaps= 7 total=593 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0359)T11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0359)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0359)N13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 T0359 14 :VQGLGITIA 1y8tA 228 :HASLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGFTNQQAVEVLR 1y8tA 274 :INSADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 7 total=599 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0359)T81 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQGF 1y8tA 274 :INSA T0359 72 :QQAVEVLR 1y8tA 278 :DALVAAVR T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ET 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 6 total=607 Number of alignments=123 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0359)I25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0359)G26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0359)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0359)A45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0359)H48 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0359)G50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0359)G63 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0359)T64 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0359)N65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0359)R91 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0359)R92 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0359)G93 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0359 16 :GLGITIA 1y8tA 230 :SLGVQVT T0359 34 :GIFVKSITKS 1y8tA 243 :GAKIVEVVAG T0359 46 :VE 1y8tA 255 :AA T0359 53 :QIGDQIIAVD 1y8tA 261 :PKGVVVTKVD T0359 66 :LQG 1y8tA 274 :INS T0359 71 :NQQAVEVLRHT 1y8tA 277 :ADALVAAVRSK T0359 82 :GQTVLLTLM 1y8tA 290 :GATVALTFQ T0359 94 :ET 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=615 Number of alignments=124 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qauA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1qauA/merged-a2m # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKN 1qauA 15 :VISVRLFKR T0359 14 :VQGLGITIAGY 1qauA 25 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGETS 1qauA 91 :THVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=619 Number of alignments=125 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 6 :FDVELTKN 1qauA 16 :ISVRLFKR T0359 14 :VQGLGITIAGY 1qauA 25 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGET 1qauA 91 :THVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=623 Number of alignments=126 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1qauA 90 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=627 Number of alignments=127 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1qauA 90 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=631 Number of alignments=128 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=635 Number of alignments=129 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=639 Number of alignments=130 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=642 Number of alignments=131 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=645 Number of alignments=132 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=648 Number of alignments=133 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=651 Number of alignments=134 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGYIG 1qauA 27 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=654 Number of alignments=135 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGYIG 1qauA 27 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=657 Number of alignments=136 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGYIG 1qauA 27 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=660 Number of alignments=137 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGYIG 1qauA 27 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=663 Number of alignments=138 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 23 :GYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1qauA 29 :GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=664 Number of alignments=139 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 12 :KNVQGLGITI 1qauA 23 :RKVGGLGFLV T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1qauA 33 :KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=666 Number of alignments=140 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAG 1qauA 26 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 35 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG T0359 95 :TSV 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=671 Number of alignments=141 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGY 1qauA 26 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG T0359 95 :TSV 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=676 Number of alignments=142 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAG 1qauA 26 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 35 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG T0359 95 :TSV 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=681 Number of alignments=143 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGY 1qauA 27 :GLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG T0359 95 :T 1qauA 124 :Q Number of specific fragments extracted= 5 number of extra gaps= 0 total=686 Number of alignments=144 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAG 1qauA 26 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 35 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=690 Number of alignments=145 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGY 1qauA 26 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRG 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=694 Number of alignments=146 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAG 1qauA 26 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 35 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=698 Number of alignments=147 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNVQ 1qauA 15 :VISVRLFKRKV T0359 16 :GLGITIAGY 1qauA 27 :GLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qauA 90 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=702 Number of alignments=148 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=706 Number of alignments=149 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=710 Number of alignments=150 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=714 Number of alignments=151 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=718 Number of alignments=152 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 89 :SETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=722 Number of alignments=153 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRR 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=726 Number of alignments=154 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=730 Number of alignments=155 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELTKNV 1qauA 15 :VISVRLFKRK T0359 15 :QGLGITIAGYIG 1qauA 26 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=734 Number of alignments=156 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1qauA)N14 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=736 Number of alignments=157 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1qauA)N14 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=738 Number of alignments=158 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELT 1qauA 15 :VISVRLF T0359 12 :KNVQGLGITIAGYIGD 1qauA 23 :RKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0359 84 :TVLLTLMRRGET 1qauA 92 :HVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=742 Number of alignments=159 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELT 1qauA 15 :VISVRLF T0359 12 :KNVQGLGITIAGYIGD 1qauA 23 :RKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0359 84 :TVLLTLMRRGETS 1qauA 92 :HVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=746 Number of alignments=160 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1qauA)N14 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=748 Number of alignments=161 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 6 :FDVELTKNVQGLGITIAGYIGD 1qauA 17 :SVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=750 Number of alignments=162 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0359 6 :FDVELTKNVQGLGITIAGYIGD 1qauA 17 :SVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0359 84 :TVLLTLMRRGE 1qauA 92 :HVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=753 Number of alignments=163 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1qauA)N14 T0359 5 :TFDVELT 1qauA 15 :VISVRLF T0359 12 :KNVQGLGITIAGYIGD 1qauA 23 :RKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0359 84 :TVLLTLMRRGET 1qauA 92 :HVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=757 Number of alignments=164 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h2bA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2h2bA/merged-a2m # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKLE 2h2bA 33 :GFGIAISGGRDNPHFQ T0359 32 :PSGIFVKSITKSSAV 2h2bA 51 :ETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=761 Number of alignments=165 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKLE 2h2bA 33 :GFGIAISGGRDNPHFQ T0359 32 :PSGIFVKSITKSSAV 2h2bA 51 :ETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=765 Number of alignments=166 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKLE 2h2bA 33 :GFGIAISGGRDNPHFQ T0359 32 :PSGIFVKSITKSSAV 2h2bA 51 :ETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 4 number of extra gaps= 0 total=769 Number of alignments=167 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 3 :SETFDVELTKNVQ 2h2bA 19 :WEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKLE 2h2bA 33 :GFGIAISGGRDNPHFQ T0359 32 :PSGIFVKSITKSSAV 2h2bA 51 :ETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 4 number of extra gaps= 0 total=773 Number of alignments=168 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAV 2h2bA 50 :GETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=777 Number of alignments=169 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAV 2h2bA 50 :GETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=781 Number of alignments=170 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAV 2h2bA 50 :GETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKK Number of specific fragments extracted= 4 number of extra gaps= 0 total=785 Number of alignments=171 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 3 :SETFDVELTKNVQ 2h2bA 19 :WEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAV 2h2bA 50 :GETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKK Number of specific fragments extracted= 4 number of extra gaps= 0 total=789 Number of alignments=172 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDK 2h2bA 18 :IWEQHTVTLHRAPGFGFGIAISGGRDNP T0359 29 :KLEPSGIFVKSITKSSAV 2h2bA 48 :QSGETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 3 number of extra gaps= 0 total=792 Number of alignments=173 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDK 2h2bA 18 :IWEQHTVTLHRAPGFGFGIAISGGRDNP T0359 29 :KLEPSGIFVKSITKSSAV 2h2bA 48 :QSGETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 3 number of extra gaps= 0 total=795 Number of alignments=174 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDK 2h2bA 21 :QHTVTLHRAPGFGFGIAISGGRDNP T0359 29 :KLEPSGIFVKSITKSSAV 2h2bA 48 :QSGETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 3 number of extra gaps= 0 total=798 Number of alignments=175 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDK 2h2bA 21 :QHTVTLHRAPGFGFGIAISGGRDNP T0359 29 :KLEPSGIFVKSITKSSAV 2h2bA 48 :QSGETSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 3 number of extra gaps= 0 total=801 Number of alignments=176 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 16 :GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h2bA 33 :GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK Number of specific fragments extracted= 1 number of extra gaps= 0 total=802 Number of alignments=177 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 15 :QGLGITIAGYIGDKKLEP 2h2bA 32 :FGFGIAISGGRDNPHFQS T0359 33 :SGIFVKSITKSSAV 2h2bA 52 :TSIVISDVLKGGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h2bA 66 :EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=805 Number of alignments=178 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 95 :TSV 2h2bA 118 :TYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=810 Number of alignments=179 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 95 :TSV 2h2bA 118 :TYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=815 Number of alignments=180 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTKNVQ 2h2bA 20 :EQHTVTLHRAPG T0359 16 :GLGITIAGYIG 2h2bA 33 :GFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 95 :TSV 2h2bA 118 :TYL Number of specific fragments extracted= 6 number of extra gaps= 0 total=821 Number of alignments=181 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTKNVQ 2h2bA 20 :EQHTVTLHRAPG T0359 16 :GLGITIAGYIG 2h2bA 33 :GFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 95 :TSV 2h2bA 118 :TYL Number of specific fragments extracted= 6 number of extra gaps= 0 total=827 Number of alignments=182 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 4 number of extra gaps= 0 total=831 Number of alignments=183 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 3 :SETFDVELTKNVQ 2h2bA 19 :WEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 4 number of extra gaps= 0 total=835 Number of alignments=184 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIG 2h2bA 33 :GFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=839 Number of alignments=185 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIG 2h2bA 33 :GFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG T0359 96 :SV 2h2bA 116 :RT Number of specific fragments extracted= 5 number of extra gaps= 0 total=844 Number of alignments=186 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=848 Number of alignments=187 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTKNVQ 2h2bA 17 :MIWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=852 Number of alignments=188 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTKNVQ 2h2bA 20 :EQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 5 number of extra gaps= 0 total=857 Number of alignments=189 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTKNVQ 2h2bA 20 :EQHTVTLHRAPG T0359 16 :GLGITIAGYIGD 2h2bA 33 :GFGIAISGGRDN T0359 28 :KKLEPSGIFVKSITKSSAVE 2h2bA 47 :FQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 5 number of extra gaps= 0 total=862 Number of alignments=190 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 4 number of extra gaps= 0 total=866 Number of alignments=191 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 4 :ETFDVELTKNVQ 2h2bA 20 :EQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKK Number of specific fragments extracted= 4 number of extra gaps= 0 total=870 Number of alignments=192 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGDKKL 2h2bA 33 :GFGIAISGGRDNPHF T0359 31 :EPSGIFVKSITKSSAVE 2h2bA 50 :GETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=874 Number of alignments=193 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQ 2h2bA 18 :IWEQHTVTLHRAPG T0359 16 :GLGITIAGYIGD 2h2bA 33 :GFGIAISGGRDN T0359 28 :KKLEPSGIFVKSITKSSAVE 2h2bA 47 :FQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGG Number of specific fragments extracted= 4 number of extra gaps= 0 total=878 Number of alignments=194 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :S 2h2bA 14 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 2h2bA 19 :WEQHTVTLHRAPGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=882 Number of alignments=195 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :S 2h2bA 14 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 2h2bA 19 :WEQHTVTLHRAPGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=886 Number of alignments=196 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTK 2h2bA 20 :EQHTVTLHR T0359 13 :NVQGLGITIAGYIG 2h2bA 30 :PGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 5 number of extra gaps= 0 total=891 Number of alignments=197 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMS 2h2bA 14 :GSH T0359 4 :ETFDVELTK 2h2bA 20 :EQHTVTLHR T0359 13 :NVQGLGITIAGYIG 2h2bA 30 :PGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR T0359 92 :RGETSV 2h2bA 115 :RRTTYL Number of specific fragments extracted= 6 number of extra gaps= 0 total=897 Number of alignments=198 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 2h2bA 19 :WEQHTVTLHRAPGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 3 number of extra gaps= 0 total=900 Number of alignments=199 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2h2bA 21 :QHTVTLHRAPGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG Number of specific fragments extracted= 3 number of extra gaps= 0 total=903 Number of alignments=200 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 1 :SMSETFDVELTK 2h2bA 17 :MIWEQHTVTLHR T0359 13 :NVQGLGITIAGYIG 2h2bA 30 :PGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=907 Number of alignments=201 # 2h2bA read from 2h2bA/merged-a2m # found chain 2h2bA in template set T0359 2 :MSETFDVELTK 2h2bA 18 :IWEQHTVTLHR T0359 13 :NVQGLGITIAGYIG 2h2bA 30 :PGFGFGIAISGGRD T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h2bA 46 :HFQSGETSIVISDVLKGGPAE T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2h2bA 67 :GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW Number of specific fragments extracted= 4 number of extra gaps= 0 total=911 Number of alignments=202 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i16 expands to /projects/compbio/data/pdb/1i16.pdb.gz 1i16:Warning: there is no chain 1i16 will retry with 1i16A # T0359 read from 1i16/merged-a2m # 1i16 read from 1i16/merged-a2m # adding 1i16 to template set # found chain 1i16 in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKLEPS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKP T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1i16 59 :LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0359 83 :QTVLLTLMRRGETSV 1i16 108 :GPVTIVIRRKSLQSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=914 Number of alignments=203 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKLEPS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGSLHGDKP T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1i16 59 :LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD T0359 84 :TVLLTLMRR 1i16 109 :PVTIVIRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=917 Number of alignments=204 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0359 85 :VLLTLMRRGETSV 1i16 110 :VTIVIRRKSLQSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=920 Number of alignments=205 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0359 85 :VLLTLMRRGETSV 1i16 110 :VTIVIRRKSLQSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=923 Number of alignments=206 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0359 85 :VLLTLMRRGE 1i16 110 :VTIVIRRKSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=926 Number of alignments=207 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0359 85 :VLLTLMRRGE 1i16 110 :VTIVIRRKSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=929 Number of alignments=208 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 8 :VELTKNVQGLGITIAGYIGDKKLEPS 1i16 33 :VTLEKMSAGLGFSLEGGKGSLHGDKP T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1i16 59 :LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=931 Number of alignments=209 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1i16 32 :TVTLEKMSAGLGFSLEGGKGSLHG T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1i16 56 :DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=933 Number of alignments=210 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGE 1i16 107 :DGPVTIVIRRKSL T0359 95 :TSV 1i16 128 :GDS Number of specific fragments extracted= 4 number of extra gaps= 0 total=937 Number of alignments=211 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGE 1i16 107 :DGPVTIVIRRKSL T0359 95 :TSV 1i16 128 :GDS Number of specific fragments extracted= 4 number of extra gaps= 0 total=941 Number of alignments=212 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 5 :TFDVELTKNVQGLGITIAGYIGDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGE 1i16 107 :DGPVTIVIRRKSL T0359 95 :TSV 1i16 128 :GDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=946 Number of alignments=213 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 5 :TFDVELTKNVQGLGITIAGYIGDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGE 1i16 107 :DGPVTIVIRRKSL T0359 95 :TSV 1i16 128 :GDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=951 Number of alignments=214 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRR 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=954 Number of alignments=215 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDK 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRR 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=957 Number of alignments=216 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 3 :SE 1i16 26 :AE T0359 5 :TFDVELTKNVQGLGITIAGYIGDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETSV 1i16 107 :DGPVTIVIRRKSLQSK Number of specific fragments extracted= 4 number of extra gaps= 0 total=961 Number of alignments=217 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSL T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 54 :HGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGE 1i16 107 :DGPVTIVIRRKSL T0359 96 :S 1i16 122 :K Number of specific fragments extracted= 4 number of extra gaps= 0 total=965 Number of alignments=218 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=968 Number of alignments=219 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=971 Number of alignments=220 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=975 Number of alignments=221 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=979 Number of alignments=222 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRR 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=982 Number of alignments=223 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRG 1i16 107 :DGPVTIVIRRKS Number of specific fragments extracted= 3 number of extra gaps= 0 total=985 Number of alignments=224 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=988 Number of alignments=225 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGSLH T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0359 82 :GQTVLLTLMRRGETS 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=991 Number of alignments=226 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=994 Number of alignments=227 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=997 Number of alignments=228 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1000 Number of alignments=229 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 1 :SMS 1i16 1 :MPD T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0359 83 :QTVLLTLMRRGE 1i16 108 :GPVTIVIRRKSL T0359 95 :TSV 1i16 128 :GDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1005 Number of alignments=230 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1007 Number of alignments=231 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1i16 30 :VCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1009 Number of alignments=232 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1011 Number of alignments=233 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKGS T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1i16 53 :LHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0359 83 :QTVLLTLMRRGETSV 1i16 108 :GPVTIVIRRKSLQSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1014 Number of alignments=234 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v5lA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v5lA expands to /projects/compbio/data/pdb/1v5l.pdb.gz 1v5lA:# T0359 read from 1v5lA/merged-a2m # 1v5lA read from 1v5lA/merged-a2m # adding 1v5lA to template set # found chain 1v5lA in template set T0359 1 :SMSETFDVEL 1v5lA 2 :SSGSSGNVVL T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 4 number of extra gaps= 0 total=1018 Number of alignments=235 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVEL 1v5lA 2 :SSGSSGNVVL T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 4 number of extra gaps= 0 total=1022 Number of alignments=236 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 8 :VEL 1v5lA 9 :VVL T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1026 Number of alignments=237 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 7 :DVEL 1v5lA 8 :NVVL T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1030 Number of alignments=238 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 3 number of extra gaps= 0 total=1033 Number of alignments=239 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 3 number of extra gaps= 0 total=1036 Number of alignments=240 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 9 :ELTKNVQGLGITIAGYIG 1v5lA 9 :VVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1039 Number of alignments=241 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 10 :LTKNVQGLGITIAGYIG 1v5lA 10 :VLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1042 Number of alignments=242 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1v5lA 50 :GDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1043 Number of alignments=243 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1v5lA 45 :ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1044 Number of alignments=244 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :TSV 1v5lA 101 :SSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1048 Number of alignments=245 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDV 1v5lA 2 :SSGSSGNV T0359 10 :LTKNVQGLGITIAGYIGD 1v5lA 10 :VLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :TSV 1v5lA 101 :SSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1053 Number of alignments=246 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :TSV 1v5lA 101 :SSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1057 Number of alignments=247 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSET 1v5lA 1 :GSSGS T0359 6 :FDVELTKN 1v5lA 7 :GNVVLPGP T0359 15 :QGLGITIAGYIGD 1v5lA 15 :APWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :TSV 1v5lA 101 :SSG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1063 Number of alignments=248 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 9 :ELTKNVQGLGITIAGYIGD 1v5lA 9 :VVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1066 Number of alignments=249 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 10 :LTKNVQGLGITIAGYIGD 1v5lA 10 :VLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 3 number of extra gaps= 0 total=1069 Number of alignments=250 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 2 :MSETFDVELT 1v5lA 3 :SGSSGNVVLP T0359 13 :NVQGLGITIAGYIGD 1v5lA 13 :GPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :T 1v5lA 94 :P Number of specific fragments extracted= 5 number of extra gaps= 0 total=1074 Number of alignments=251 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 2 :MSETFDVELTKN 1v5lA 3 :SGSSGNVVLPGP T0359 15 :QGLGITIAGYIGD 1v5lA 15 :APWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0359 95 :TS 1v5lA 94 :PQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=1079 Number of alignments=252 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1082 Number of alignments=253 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1v5lA 2 :SSGSSGNVVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1085 Number of alignments=254 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETF 1v5lA 1 :GSSGSS T0359 7 :DVELT 1v5lA 8 :NVVLP T0359 13 :NVQGLGITIAGYIGD 1v5lA 13 :GPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1090 Number of alignments=255 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETF 1v5lA 1 :GSSGSS T0359 7 :DVELTKN 1v5lA 8 :NVVLPGP T0359 15 :QGLGITIAGYIGD 1v5lA 15 :APWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1095 Number of alignments=256 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 9 :ELTKNVQGLGITIAGYIG 1v5lA 9 :VVLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1098 Number of alignments=257 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 10 :LTKNVQGLGITIAGYIG 1v5lA 10 :VLPGPAPWGFRLSGGID T0359 31 :EPSGIFVKSITKSSAVEHDG 1v5lA 27 :FNQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 3 number of extra gaps= 0 total=1101 Number of alignments=258 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELT 1v5lA 2 :SSGSSGNVVLP T0359 13 :NVQGLGITIAGYIGD 1v5lA 13 :GPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1105 Number of alignments=259 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 4 :ETFDVELTKN 1v5lA 5 :SSGNVVLPGP T0359 15 :QGLGITIAGYIGD 1v5lA 15 :APWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 4 number of extra gaps= 0 total=1109 Number of alignments=260 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 3 number of extra gaps= 0 total=1112 Number of alignments=261 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 3 number of extra gaps= 0 total=1115 Number of alignments=262 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0359 94 :ETSV 1v5lA 100 :PSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1119 Number of alignments=263 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 1 :SMSE 1v5lA 1 :GSSG T0359 5 :TFDV 1v5lA 8 :NVVL T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0359 94 :ETSV 1v5lA 100 :PSSG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1125 Number of alignments=264 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 9 :ELTKNVQGLGITIAGYIGD 1v5lA 9 :VVLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1128 Number of alignments=265 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 10 :LTKNVQGLGITIAGYIGD 1v5lA 10 :VLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1131 Number of alignments=266 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 10 :LTKNVQGLGITIAGYIGD 1v5lA 10 :VLPGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1134 Number of alignments=267 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0359 12 :KNVQGLGITIAGYIGD 1v5lA 12 :PGPAPWGFRLSGGIDF T0359 32 :PSGIFVKSITKSSAVEHDG 1v5lA 28 :NQPLVITRITPGSKAAAAN T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 3 number of extra gaps= 0 total=1137 Number of alignments=268 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1tp5A/merged-a2m # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1140 Number of alignments=269 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1143 Number of alignments=270 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1146 Number of alignments=271 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGET 1tp5A 390 :AQYKPEE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1149 Number of alignments=272 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1152 Number of alignments=273 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1155 Number of alignments=274 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1158 Number of alignments=275 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1161 Number of alignments=276 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1164 Number of alignments=277 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1167 Number of alignments=278 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1170 Number of alignments=279 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1173 Number of alignments=280 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set T0359 16 :GLGITIAG 1tp5A 322 :GLGFNIVG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1tp5A 330 :GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1175 Number of alignments=281 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 10 :LTKNVQGLGITIAGY 1tp5A 316 :IHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1177 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE T0359 95 :TSV 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1181 Number of alignments=282 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE T0359 95 :TSV 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1185 Number of alignments=283 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMS 1tp5A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGY 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY T0359 95 :TSV 1tp5A 413 :VTD Number of specific fragments extracted= 5 number of extra gaps= 1 total=1190 Number of alignments=284 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSE 1tp5A 301 :FLGE T0359 5 :TFDVELTKNVQGLGITIAGY 1tp5A 311 :PRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY T0359 93 :GE 1tp5A 402 :AN T0359 96 :SV 1tp5A 414 :TD Number of specific fragments extracted= 6 number of extra gaps= 1 total=1196 Number of alignments=285 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1199 Number of alignments=286 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 3 :SETFDVELTKNVQGLGITIAGY 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1202 Number of alignments=287 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGY 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1205 Number of alignments=288 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGY 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1208 Number of alignments=289 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETS 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1211 Number of alignments=290 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETS 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1214 Number of alignments=291 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMS 1tp5A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY T0359 93 :GE 1tp5A 403 :NS Number of specific fragments extracted= 5 number of extra gaps= 1 total=1219 Number of alignments=292 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 1 :SMS 1tp5A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY T0359 92 :RGETS 1tp5A 401 :EANSR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1224 Number of alignments=293 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETS 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1227 Number of alignments=294 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1230 Number of alignments=295 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1233 Number of alignments=296 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1236 Number of alignments=297 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1239 Number of alignments=298 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGETSV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1242 Number of alignments=299 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK T0359 93 :GET 1tp5A 407 :DSS T0359 96 :SV 1tp5A 414 :TD Number of specific fragments extracted= 5 number of extra gaps= 1 total=1247 Number of alignments=300 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1250 Number of alignments=301 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRGE 1tp5A 390 :AQYKPE Number of specific fragments extracted= 3 number of extra gaps= 1 total=1253 Number of alignments=302 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRRG 1tp5A 390 :AQYKP Number of specific fragments extracted= 3 number of extra gaps= 1 total=1256 Number of alignments=303 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMR 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1259 Number of alignments=304 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0359 89 :LMRR 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1262 Number of alignments=305 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i92A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i92A expands to /projects/compbio/data/pdb/1i92.pdb.gz 1i92A:Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1i92A # T0359 read from 1i92A/merged-a2m # 1i92A read from 1i92A/merged-a2m # adding 1i92A to template set # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 1 :SM 1i92A 9 :GM T0359 4 :ETFDVELTKNVQGLGITIAGYI 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETSV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1267 Number of alignments=306 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 1 :SM 1i92A 9 :GM T0359 4 :ETFDVELTKNVQGLGITIAGYI 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETSV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1272 Number of alignments=307 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 8 :VELTKNVQGLGITIAGYI 1i92A 15 :CCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1276 Number of alignments=308 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 6 :FDVELTKNVQGLGITIAGYI 1i92A 13 :RLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1280 Number of alignments=309 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 30 :LEPSGIFVKSITKSSAVEHD 1i92A 32 :KGKLGQYIRLVEPGSPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1285 Number of alignments=310 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 4 :ETFDVELTKNVQGLGITIAG 1i92A 11 :LPRLCCLEKGPNGYGFHLHG T0359 30 :LEPSGIFVKSITKSSAVEHD 1i92A 32 :KGKLGQYIRLVEPGSPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRG 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 4 number of extra gaps= 1 total=1289 Number of alignments=311 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set T0359 10 :LTKNVQGLGITIAGYIGDK 1i92A 17 :LEKGPNGYGFHLHGEKGKL T0359 34 :GIFVKSITKSSAVEHDGRIQ 1i92A 36 :GQYIRLVEPGSPAEKAGLLA T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLR 1i92A 56 :GDRLVEVNGENVEKETHQQVVSRIR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1292 Number of alignments=312 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 10 :LTKNVQGLGITIAGYIGD 1i92A 17 :LEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDGRI 1i92A 35 :LGQYIRLVEPGSPAEKAGLL T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 55 :AGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLT 1i92A 85 :AVRLL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1296 Number of alignments=313 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1301 Number of alignments=314 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1306 Number of alignments=315 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1311 Number of alignments=316 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1316 Number of alignments=317 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAG 1i92A 12 :PRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1320 Number of alignments=318 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAG 1i92A 12 :PRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1324 Number of alignments=319 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TSV 1i92A 97 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1329 Number of alignments=320 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1i92A 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ T0359 95 :TS 1i92A 97 :TR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1334 Number of alignments=321 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1338 Number of alignments=322 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1342 Number of alignments=323 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 1 :SM 1i92A 9 :GM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 5 number of extra gaps= 1 total=1347 Number of alignments=324 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 1 :SM 1i92A 9 :GM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 5 number of extra gaps= 1 total=1352 Number of alignments=325 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAGYIG 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGET 1i92A 85 :AVRLLVVDPEQD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1356 Number of alignments=326 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAGYIG 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1360 Number of alignments=327 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1364 Number of alignments=328 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1368 Number of alignments=329 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETSV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1372 Number of alignments=330 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGET 1i92A 85 :AVRLLVVDPEQD T0359 96 :SV 1i92A 98 :RL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1377 Number of alignments=331 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGET 1i92A 85 :AVRLLVVDPEQD T0359 96 :SV 1i92A 98 :RL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1382 Number of alignments=332 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETS 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1386 Number of alignments=333 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1390 Number of alignments=334 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGE 1i92A 85 :AVRLLVVDPEQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=1394 Number of alignments=335 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETSV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1398 Number of alignments=336 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0359)G82 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0359)Q83 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1i92A 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0359 84 :TVLLTLMRRGETSV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1402 Number of alignments=337 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bfeA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bfeA expands to /projects/compbio/data/pdb/1bfe.pdb.gz 1bfeA:# T0359 read from 1bfeA/merged-a2m # 1bfeA read from 1bfeA/merged-a2m # adding 1bfeA to template set # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1404 Number of alignments=338 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1406 Number of alignments=339 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1408 Number of alignments=340 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1410 Number of alignments=341 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :T 1bfeA 400 :F Number of specific fragments extracted= 3 number of extra gaps= 0 total=1413 Number of alignments=342 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 4 :ETFDVELTKNVQGLGITIAG 1bfeA 310 :EPRRIVIHRGSTGLGFNIIG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1415 Number of alignments=343 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 16 :GLGITIAG 1bfeA 322 :GLGFNIIG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1bfeA 330 :GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1417 Number of alignments=344 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 10 :LTKNVQGLGITIAGY 1bfeA 316 :IHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 2 number of extra gaps= 0 total=1419 Number of alignments=345 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :TSV 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1422 Number of alignments=346 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :TSV 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1425 Number of alignments=347 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMS 1bfeA 306 :DIP T0359 4 :ETFDVELTKNVQGLGITIAGY 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 95 :TSV 1bfeA 413 :VTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1429 Number of alignments=348 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMS 1bfeA 306 :DIP T0359 4 :ETFDVELTKNVQGLGITIAGYI 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 332 :DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 93 :GE 1bfeA 402 :AN T0359 95 :TSV 1bfeA 413 :VTN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1434 Number of alignments=349 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1436 Number of alignments=350 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 3 :SETFDVELTKNVQGLGITIAGY 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1438 Number of alignments=351 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1440 Number of alignments=352 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYI 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1bfeA 332 :DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1442 Number of alignments=353 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1444 Number of alignments=354 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1446 Number of alignments=355 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMS 1bfeA 306 :DIP T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 95 :T 1bfeA 405 :R Number of specific fragments extracted= 4 number of extra gaps= 0 total=1450 Number of alignments=356 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 1 :SMS 1bfeA 306 :DIP T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 92 :RGETS 1bfeA 407 :NSSGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1454 Number of alignments=357 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1456 Number of alignments=358 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1458 Number of alignments=359 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1460 Number of alignments=360 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1462 Number of alignments=361 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1464 Number of alignments=362 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1466 Number of alignments=363 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0359 93 :GET 1bfeA 407 :NSS T0359 96 :SV 1bfeA 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1470 Number of alignments=364 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0359 93 :GETS 1bfeA 408 :SSGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1473 Number of alignments=365 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1475 Number of alignments=366 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1477 Number of alignments=367 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1479 Number of alignments=368 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1481 Number of alignments=369 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1fc6A/merged-a2m # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 3 :SETF 1fc6A 80 :SEQL T0359 7 :DVELTKNVQGLGITIAGYIGDKK 1fc6A 153 :RRGTAGSVTGVGLEITYDGGSGK T0359 34 :GIFVKSITKSSAVEHD 1fc6A 176 :DVVVLTPAPGGPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 192 :GARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0359 83 :QTVLLT 1fc6A 324 :VNVARM T0359 89 :LMRR 1fc6A 421 :TPAG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1487 Number of alignments=370 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 12 :KNVQGLGITIAGYIGDKK 1fc6A 158 :GSVTGVGLEITYDGGSGK T0359 34 :GIFVKSITKSSAVEHD 1fc6A 176 :DVVVLTPAPGGPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1fc6A 192 :GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD T0359 84 :TV 1fc6A 226 :QV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1491 Number of alignments=371 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 2 :MSETFDVELTKNVQ 1fc6A 149 :LAALRRGTAGSVTG T0359 16 :GLGITIAGYIG 1fc6A 164 :GLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1496 Number of alignments=372 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 2 :MSETFDVELTKNVQ 1fc6A 149 :LAALRRGTAGSVTG T0359 16 :GLGITIAGYIG 1fc6A 164 :GLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1501 Number of alignments=373 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 2 :MSETFDVELTKNVQ 1fc6A 149 :LAALRRGTAGSVTG T0359 16 :GLGITIAGYIG 1fc6A 164 :GLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1506 Number of alignments=374 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 3 :SETFDVELTKNVQ 1fc6A 150 :AALRRGTAGSVTG T0359 16 :GLGITIAGYIG 1fc6A 164 :GLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGET 1fc6A 224 :DSQVEVVLHAPGAP Number of specific fragments extracted= 5 number of extra gaps= 0 total=1511 Number of alignments=375 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0359 80 :HTGQTVLLTLMRRGETSV 1fc6A 222 :EADSQVEVVLHAPGAPSN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1515 Number of alignments=376 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0359 80 :HTGQTVLLTLMRRGETS 1fc6A 222 :EADSQVEVVLHAPGAPS T0359 97 :V 1fc6A 277 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=1520 Number of alignments=377 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1fc6A 150 :AALRRGTAGSVTGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0359 80 :HTGQTVLLTLMRRG 1fc6A 222 :EADSQVEVVLHAPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1524 Number of alignments=378 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1fc6A 150 :AALRRGTAGSVTGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0359 80 :HTGQTVLLTLMRRGE 1fc6A 222 :EADSQVEVVLHAPGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1528 Number of alignments=379 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDK 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0359 81 :TGQTVLLTLMRRGETSV 1fc6A 223 :ADSQVEVVLHAPGAPSN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1532 Number of alignments=380 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0359 81 :TGQTVLLTLMRRGETS 1fc6A 223 :ADSQVEVVLHAPGAPS T0359 97 :V 1fc6A 309 :V Number of specific fragments extracted= 5 number of extra gaps= 0 total=1537 Number of alignments=381 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDK 1fc6A 150 :AALRRGTAGSVTGVGLEITYDGGSG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0359 81 :TGQTVLLTLMRRGE 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1541 Number of alignments=382 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1fc6A 151 :ALRRGTAGSVTGVGLEITYDGG T0359 33 :SGIFVKSITKSSAVEHDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0359 81 :TGQTVLLTLMRRGE 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1545 Number of alignments=383 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 196 :GDVIVTVDGTAVKGMSLYDVSDLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1546 Number of alignments=384 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 40 :ITKSSAVEHDG 1fc6A 182 :PAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1548 Number of alignments=385 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)S96 because last residue in template chain is (1fc6A)F463 T0359 1 :SMSETFDVELTKNV 1fc6A 143 :FLEPSRLAALRRGT T0359 15 :QGLGITIAGY 1fc6A 161 :TGVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGE 1fc6A 224 :DSQVEVVLHAPGA T0359 95 :T 1fc6A 462 :L Number of specific fragments extracted= 6 number of extra gaps= 0 total=1554 Number of alignments=386 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQ 1fc6A 105 :SWFKLRETYLKKEPM T0359 34 :GIFVKSITKSSAVEHDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGE 1fc6A 224 :DSQVEVVLHAPGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1558 Number of alignments=387 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1fc6A)V78 T0359 3 :SE 1fc6A 79 :TS T0359 24 :YIGD 1fc6A 96 :YVDK T0359 29 :KLEPS 1fc6A 100 :SFNGQ T0359 34 :GIFVKSITKSSAVEHDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 79 :RHTGQTVLLTLMRRGE 1fc6A 221 :GEADSQVEVVLHAPGA Number of specific fragments extracted= 6 number of extra gaps= 0 total=1564 Number of alignments=388 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1fc6A)V78 T0359 11 :TKNVQ 1fc6A 155 :GTAGS T0359 16 :GLGITIAGY 1fc6A 162 :GVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 81 :TGQTVLLTLMRRGE 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1569 Number of alignments=389 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 16 :GLGITIAGY 1fc6A 162 :GVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1572 Number of alignments=390 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 7 :DVELTKNVQ 1fc6A 149 :LAALRRGTA T0359 16 :GLGITIAGY 1fc6A 162 :GVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTL 1fc6A 224 :DSQVEVVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1577 Number of alignments=391 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 16 :GLGITIAGY 1fc6A 162 :GVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 79 :RHTGQTVLLTLMRRGE 1fc6A 221 :GEADSQVEVVLHAPGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1581 Number of alignments=392 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 13 :NVQ 1fc6A 157 :AGS T0359 16 :GLGITIAGY 1fc6A 162 :GVGLEITYD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1fc6A 171 :GGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 81 :TGQTVLLTLMRRG 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1586 Number of alignments=393 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNV 1fc6A 143 :FLEPSRLAALRRGT T0359 15 :QGLGITIAGYIG 1fc6A 161 :TGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1591 Number of alignments=394 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SMSETFDVELTKNVQ 1fc6A 143 :FLEPSRLAALRRGTA T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1596 Number of alignments=395 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :SM 1fc6A 78 :VT T0359 11 :T 1fc6A 145 :E T0359 12 :KNVQ 1fc6A 156 :TAGS T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGETS 1fc6A 224 :DSQVEVVLHAPGAPS Number of specific fragments extracted= 7 number of extra gaps= 0 total=1603 Number of alignments=396 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 1 :S 1fc6A 78 :V T0359 3 :SE 1fc6A 120 :DR T0359 11 :TKNVQ 1fc6A 155 :GTAGS T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 81 :TGQTVLLTLMRRGETS 1fc6A 223 :ADSQVEVVLHAPGAPS Number of specific fragments extracted= 7 number of extra gaps= 0 total=1610 Number of alignments=397 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRH 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1613 Number of alignments=398 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 6 :FDVELTKNVQ 1fc6A 148 :RLAALRRGTA T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTL 1fc6A 224 :DSQVEVVL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1618 Number of alignments=399 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 15 :QGLGITIAGYIG 1fc6A 161 :TGVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0359 82 :GQTVLLTLMRRGET 1fc6A 224 :DSQVEVVLHAPGAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1622 Number of alignments=400 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 13 :NVQ 1fc6A 157 :AGS T0359 16 :GLGITIAGYIG 1fc6A 162 :GVGLEITYDGG T0359 31 :EPSGIFVKSITKSSAVEHDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 81 :TGQTVLLTLMRRG 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1627 Number of alignments=401 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)T11 because first residue in template chain is (1fc6A)V78 T0359 12 :KNVQGLGITIAGYIG 1fc6A 79 :TSEQLLFLEAWRAVD T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1fc6A 169 :YDGGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1630 Number of alignments=402 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1fc6A)V78 T0359 3 :SETFDVELT 1fc6A 79 :TSEQLLFLE T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1fc6A 170 :DGGSGKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1633 Number of alignments=403 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1fc6A)V78 T0359 3 :S 1fc6A 79 :T T0359 12 :KNVQGLGITIAGYIGD 1fc6A 158 :GSVTGVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADS T0359 85 :VLLTLMRRGETS 1fc6A 227 :VEVVLHAPGAPS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1638 Number of alignments=404 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1fc6A)V78 T0359 3 :S 1fc6A 79 :T T0359 5 :TFDV 1fc6A 141 :TRFL T0359 12 :KNVQGLGITIAGYIGD 1fc6A 158 :GSVTGVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 79 :RHTGQTVLLTLMRRG 1fc6A 221 :GEADSQVEVVLHAPG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1644 Number of alignments=405 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 16 :GLGITIAGYIGD 1fc6A 162 :GVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1647 Number of alignments=406 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 13 :NVQGLGITIAGYIGD 1fc6A 159 :SVTGVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1650 Number of alignments=407 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 12 :KNVQGLGITIAGYIGD 1fc6A 158 :GSVTGVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0359 80 :HTGQTVLLTLMRRG 1fc6A 222 :EADSQVEVVLHAPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1654 Number of alignments=408 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0359 12 :KNVQGLGITIAGYIGD 1fc6A 158 :GSVTGVGLEITYDGGS T0359 32 :PSGIFVKSITKSSAVEHDG 1fc6A 174 :GKDVVVLTPAPGGPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVL 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0359 79 :RHTGQTVLLTLMR 1fc6A 221 :GEADSQVEVVLHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1658 Number of alignments=409 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gm1A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gm1A expands to /projects/compbio/data/pdb/1gm1.pdb.gz 1gm1A:# T0359 read from 1gm1A/merged-a2m # 1gm1A read from 1gm1A/merged-a2m # adding 1gm1A to template set # found chain 1gm1A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYI 1gm1A 11 :GDTFEVELAKTDGSLGISVTGGV T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1gm1A 34 :NTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1660 Number of alignments=410 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1gm1A 11 :GDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1gm1A 35 :TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1662 Number of alignments=411 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1664 Number of alignments=412 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1666 Number of alignments=413 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1668 Number of alignments=414 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1gm1A 10 :PGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1670 Number of alignments=415 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1gm1A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 35 :TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1672 Number of alignments=416 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1gm1A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 35 :TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1674 Number of alignments=417 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1gm1A 35 :TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1676 Number of alignments=418 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1gm1A 10 :PGDTFEVELAKTDGSLGISVTGGVN T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1gm1A 35 :TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1678 Number of alignments=419 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1gm1A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1680 Number of alignments=420 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1gm1A)P102 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1682 Number of alignments=421 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1gm1A 10 :PGDTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1684 Number of alignments=422 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1gm1A 12 :DTFEVELAKTDGSLGISVTGGVNT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1gm1A 36 :SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1686 Number of alignments=423 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kefA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kefA expands to /projects/compbio/data/pdb/1kef.pdb.gz 1kefA:# T0359 read from 1kefA/merged-a2m # 1kefA read from 1kefA/merged-a2m # adding 1kefA to template set # found chain 1kefA in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1kefA 4 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1688 Number of alignments=424 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1kefA 4 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1690 Number of alignments=425 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1692 Number of alignments=426 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1694 Number of alignments=427 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1696 Number of alignments=428 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1698 Number of alignments=429 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0359)T95 because last residue in template chain is (1kefA)P93 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1700 Number of alignments=430 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0359)T95 because last residue in template chain is (1kefA)P93 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1702 Number of alignments=431 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0359)T95 because last residue in template chain is (1kefA)P93 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1704 Number of alignments=432 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1706 Number of alignments=433 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0359)T95 because last residue in template chain is (1kefA)P93 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 28 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1708 Number of alignments=434 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0359)T95 because last residue in template chain is (1kefA)P93 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 28 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1710 Number of alignments=435 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kefA)E1 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1kefA 2 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 28 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1712 Number of alignments=436 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0359 6 :FDVELTKNVQGLGITIAGYIGDKK 1kefA 3 :EEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kefA 28 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1714 Number of alignments=437 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nf3C/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nf3C expands to /projects/compbio/data/pdb/1nf3.pdb.gz 1nf3C:# T0359 read from 1nf3C/merged-a2m # 1nf3C read from 1nf3C/merged-a2m # adding 1nf3C to template set # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVRVT T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1716 Number of alignments=438 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDK 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVR T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 186 :LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1718 Number of alignments=439 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKL 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVRVT T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1720 Number of alignments=440 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDK 1nf3C 156 :RRVRLCKYGTEKPLGFYIRDGSSVR T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1nf3C 186 :LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1722 Number of alignments=441 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKLEPS 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1724 Number of alignments=442 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKLEPS 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1726 Number of alignments=443 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKLEPS 1nf3C 156 :RRVRLCKYGTEKPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1728 Number of alignments=444 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKLEPS 1nf3C 156 :RRVRLCKYGTEKPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1730 Number of alignments=445 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTK 1nf3C 151 :LPETHRRVRLCK T0359 13 :NVQGLGITIAGYIG 1nf3C 165 :TEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1733 Number of alignments=446 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 1 :SMSETFDVELTK 1nf3C 151 :LPETHRRVRLCK T0359 13 :NVQGLGITIAGYIG 1nf3C 165 :TEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1736 Number of alignments=447 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 4 :ETFDVELTK 1nf3C 154 :THRRVRLCK T0359 13 :NVQGLGITIAGYIG 1nf3C 165 :TEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1739 Number of alignments=448 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 4 :ETFDVELTK 1nf3C 154 :THRRVRLCK T0359 13 :NVQGLGITIAGYIG 1nf3C 165 :TEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1742 Number of alignments=449 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1nf3C 190 :PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1743 Number of alignments=450 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1nf3C 189 :VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1744 Number of alignments=451 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNV 1nf3C 151 :LPETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1747 Number of alignments=452 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNV 1nf3C 151 :LPETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEP 1nf3C 167 :KPLGFYIRDGSSVRVTPH T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1750 Number of alignments=453 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNVQ 1nf3C 152 :PETHRRVRLCKYGT T0359 16 :GLGITIAGYIG 1nf3C 168 :PLGFYIRDGSS T0359 27 :DKKLEP 1nf3C 183 :PHGLEK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 190 :PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1754 Number of alignments=454 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :S 1nf3C 131 :I T0359 2 :MSETFDVELTKNVQ 1nf3C 152 :PETHRRVRLCKYGT T0359 16 :GLGITIAGYIG 1nf3C 168 :PLGFYIRDGSS T0359 27 :DKKLEP 1nf3C 183 :PHGLEK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 190 :PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1759 Number of alignments=455 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 6 :FDVELTKNV 1nf3C 156 :RRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1762 Number of alignments=456 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 5 :TFDVELTKNV 1nf3C 155 :HRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEP 1nf3C 167 :KPLGFYIRDGSSVRVTPH T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1765 Number of alignments=457 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNVQ 1nf3C 152 :PETHRRVRLCKYGT T0359 16 :GLGITIAGYIG 1nf3C 168 :PLGFYIRDGSS T0359 27 :DKKLEP 1nf3C 183 :PHGLEK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 190 :PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1769 Number of alignments=458 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNVQ 1nf3C 152 :PETHRRVRLCKYGT T0359 16 :GLGITIAGYIG 1nf3C 168 :PLGFYIRDGSS T0359 27 :DKKLEP 1nf3C 183 :PHGLEK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 190 :PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1773 Number of alignments=459 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNV 1nf3C 151 :LPETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1776 Number of alignments=460 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :SMSETFDVELTKNV 1nf3C 151 :LPETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1779 Number of alignments=461 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNV 1nf3C 152 :PETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1782 Number of alignments=462 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 1 :S 1nf3C 131 :I T0359 2 :MSETFDVELTKNV 1nf3C 152 :PETHRRVRLCKYG T0359 15 :QGLGITIAGYI 1nf3C 167 :KPLGFYIRDGS T0359 26 :GDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 183 :PHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1786 Number of alignments=463 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 2 :MSETFDVELTKNV 1nf3C 152 :PETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1789 Number of alignments=464 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 5 :TFDVELTKNV 1nf3C 155 :HRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1792 Number of alignments=465 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNV 1nf3C 152 :PETHRRVRLCKYG T0359 15 :QGLGITIAGYIGDKKLEPS 1nf3C 167 :KPLGFYIRDGSSVRVTPHG T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1795 Number of alignments=466 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNV 1nf3C 152 :PETHRRVRLCKYG T0359 15 :QGLGITIAGYI 1nf3C 167 :KPLGFYIRDGS T0359 26 :GDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 183 :PHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1798 Number of alignments=467 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1nf3C 154 :THRRVRLCKYGTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1800 Number of alignments=468 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1nf3C 154 :THRRVRLCKYGTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1802 Number of alignments=469 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 2 :MSETFDVELT 1nf3C 136 :PQDFRPVSSI T0359 12 :KNVQGLGITIAGYIG 1nf3C 164 :GTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1805 Number of alignments=470 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 3 :SE 1nf3C 137 :QD T0359 5 :TFDVELT 1nf3C 155 :HRRVRLC T0359 12 :KNVQGLGITIAGYIG 1nf3C 164 :GTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1809 Number of alignments=471 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1nf3C 156 :RRVRLCKYGTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1811 Number of alignments=472 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0359 6 :FDVELTKNVQGLGITIAGYIG 1nf3C 158 :VRLCKYGTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1813 Number of alignments=473 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1815 Number of alignments=474 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1nf3C)N253 T0359 4 :ETFDVELT 1nf3C 154 :THRRVRLC T0359 12 :KNVQGLGITIAGYIG 1nf3C 164 :GTEKPLGFYIRDGSS T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1818 Number of alignments=475 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1wf7A/merged-a2m # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKN 1wf7A 2 :SSGSSGSVSLVGP T0359 15 :QGLGITIAGYIGD 1wf7A 15 :APWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=1822 Number of alignments=476 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKN 1wf7A 2 :SSGSSGSVSLVGP T0359 15 :QGLGITIAGYIGD 1wf7A 15 :APWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=1826 Number of alignments=477 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 8 :VELTKN 1wf7A 9 :VSLVGP T0359 15 :QGLGITIAGYIGD 1wf7A 15 :APWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1830 Number of alignments=478 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 7 :DVELTKN 1wf7A 8 :SVSLVGP T0359 15 :QGLGITIAGYIGD 1wf7A 15 :APWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1834 Number of alignments=479 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNV 1wf7A 2 :SSGSSGSVSLVGPA T0359 16 :GLGITIAGYIGD 1wf7A 16 :PWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=1838 Number of alignments=480 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNV 1wf7A 2 :SSGSSGSVSLVGPA T0359 16 :GLGITIAGYIG 1wf7A 16 :PWGFRLQGGKD T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=1842 Number of alignments=481 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 4 :ETFDVELTKNV 1wf7A 5 :SSGSVSLVGPA T0359 16 :GLGITIAGYIGD 1wf7A 16 :PWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1846 Number of alignments=482 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 4 :ETFDVELTKNV 1wf7A 5 :SSGSVSLVGPA T0359 16 :GLGITIAGYIG 1wf7A 16 :PWGFRLQGGKD T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1850 Number of alignments=483 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1853 Number of alignments=484 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1856 Number of alignments=485 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1859 Number of alignments=486 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1862 Number of alignments=487 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1863 Number of alignments=488 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 47 :EHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 42 :ASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1864 Number of alignments=489 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0359 95 :TSV 1wf7A 101 :SSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1869 Number of alignments=490 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0359 95 :TSV 1wf7A 101 :SSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1874 Number of alignments=491 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSET 1wf7A 1 :GSSGS T0359 6 :FDVELT 1wf7A 7 :GSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0359 95 :TSV 1wf7A 101 :SSG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1880 Number of alignments=492 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETF 1wf7A 1 :GSSGSS T0359 7 :DVELT 1wf7A 8 :SVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0359 95 :TSV 1wf7A 101 :SSG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1886 Number of alignments=493 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1889 Number of alignments=494 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1892 Number of alignments=495 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1896 Number of alignments=496 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 2 :MSETFDVELT 1wf7A 3 :SGSSGSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0359 97 :V 1wf7A 94 :E Number of specific fragments extracted= 5 number of extra gaps= 0 total=1901 Number of alignments=497 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1905 Number of alignments=498 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1909 Number of alignments=499 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSET 1wf7A 1 :GSSGS T0359 6 :FDVELT 1wf7A 7 :GSVSLV T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1914 Number of alignments=500 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETF 1wf7A 1 :GSSGSS T0359 7 :DVELT 1wf7A 8 :SVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 5 number of extra gaps= 0 total=1919 Number of alignments=501 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1922 Number of alignments=502 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1925 Number of alignments=503 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELT 1wf7A 2 :SSGSSGSVSLV T0359 13 :NVQGLGITIAGYIG 1wf7A 13 :GPAPWGFRLQGGKD T0359 31 :EPSGIFVKSITKSSAVEHDG 1wf7A 27 :FNMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1929 Number of alignments=504 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 2 :MSETFDVELT 1wf7A 3 :SGSSGSVSLV T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1933 Number of alignments=505 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1936 Number of alignments=506 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1939 Number of alignments=507 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1942 Number of alignments=508 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0359 94 :ETSV 1wf7A 100 :PSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1946 Number of alignments=509 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1949 Number of alignments=510 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 13 :NVQGLGITIAGYIGD 1wf7A 13 :GPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1952 Number of alignments=511 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1955 Number of alignments=512 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1wf7A 3 :SGSSGSVSLVGPAPWGFRLQGGKDF T0359 32 :PSGIFVKSITKSSAVEHDG 1wf7A 28 :NMPLTISSLKDGGKASQAH T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1958 Number of alignments=513 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1um7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1um7A expands to /projects/compbio/data/pdb/1um7.pdb.gz 1um7A:# T0359 read from 1um7A/merged-a2m # 1um7A read from 1um7A/merged-a2m # adding 1um7A to template set # found chain 1um7A in template set T0359 4 :ETFDVELTKNVQGLGITIAG 1um7A 15 :EPRKIILHKGSTGLGFNIVG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 35 :GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1960 Number of alignments=514 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 7 :DVELTKNVQGLGITIAGYI 1um7A 18 :KIILHKGSTGLGFNIVGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 37 :DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1962 Number of alignments=515 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE T0359 95 :TSV 1um7A 111 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1965 Number of alignments=516 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 36 :EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE T0359 95 :TSV 1um7A 111 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1968 Number of alignments=517 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1970 Number of alignments=518 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1um7A 13 :AREPRKIILHKGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 36 :EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1972 Number of alignments=519 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1974 Number of alignments=520 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1976 Number of alignments=521 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1978 Number of alignments=522 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1980 Number of alignments=523 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :S 1um7A 1 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1um7A 39 :EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1983 Number of alignments=524 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 1 :S 1um7A 1 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1um7A 39 :EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1986 Number of alignments=525 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 39 :EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1988 Number of alignments=526 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1um7A 15 :EPRKIILHKGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1um7A 39 :EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1990 Number of alignments=527 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2f0aA/merged-a2m # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1995 Number of alignments=528 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2000 Number of alignments=529 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2005 Number of alignments=530 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 6 :FDVELT 2f0aA 253 :ITVTLN T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2010 Number of alignments=531 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2014 Number of alignments=532 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2018 Number of alignments=533 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2022 Number of alignments=534 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 T0359 6 :FDVELTKNV 2f0aA 253 :ITVTLNMEK T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2026 Number of alignments=535 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)S96 because last residue in template chain is (2f0aA)E342 T0359 1 :SM 2f0aA 251 :MI T0359 5 :TFDVELTKN 2f0aA 253 :ITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2030 Number of alignments=536 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 1 :SM 2f0aA 251 :MI T0359 5 :TFDVELTKN 2f0aA 253 :ITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTV Number of specific fragments extracted= 4 number of extra gaps= 1 total=2034 Number of alignments=537 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 6 :FDVELTKN 2f0aA 254 :TVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2037 Number of alignments=538 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 6 :FDVELTKN 2f0aA 254 :TVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLL 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGP Number of specific fragments extracted= 3 number of extra gaps= 1 total=2040 Number of alignments=539 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set T0359 17 :LGITIAGYIGDKK 2f0aA 265 :LGISIVGQSNERG T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 2f0aA 278 :DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2042 Number of alignments=540 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 2 number of extra gaps= 1 total=2044 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2048 Number of alignments=541 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2052 Number of alignments=542 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2056 Number of alignments=543 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2060 Number of alignments=544 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2064 Number of alignments=545 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 6 :FDVELTKNV 2f0aA 253 :ITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2068 Number of alignments=546 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2072 Number of alignments=547 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2076 Number of alignments=548 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 17 :LGITIAGYIG 2f0aA 265 :LGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2080 Number of alignments=549 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 17 :LGITIAGYIG 2f0aA 265 :LGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2084 Number of alignments=550 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2088 Number of alignments=551 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2092 Number of alignments=552 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 17 :LGITIAGYIG 2f0aA 265 :LGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMR 2f0aA 331 :PGPIVLTVAK Number of specific fragments extracted= 4 number of extra gaps= 1 total=2096 Number of alignments=553 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 6 :FDVELTKNV 2f0aA 253 :ITVTLNMEK T0359 17 :LGITIAGYIG 2f0aA 265 :LGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2100 Number of alignments=554 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELTKNV 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIG 2f0aA 264 :FLGISIVGQSN T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2104 Number of alignments=555 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVELT 2f0aA 252 :IITVTLN T0359 16 :GLGITIAGYIGDK 2f0aA 264 :FLGISIVGQSNER T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2108 Number of alignments=556 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 4 :ETFDVELTKN 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2112 Number of alignments=557 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 4 :ETFDVELTKN 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2116 Number of alignments=558 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVEL 2f0aA 252 :IITVTL T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRD T0359 81 :TGQTVLLTLMRR 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2121 Number of alignments=559 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVEL 2f0aA 252 :IITVTL T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2125 Number of alignments=560 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 4 :ETFDVELTKN 2f0aA 252 :IITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2128 Number of alignments=561 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0359 5 :TFDVELTKN 2f0aA 253 :ITVTLNMEK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHK Number of specific fragments extracted= 3 number of extra gaps= 1 total=2131 Number of alignments=562 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVEL 2f0aA 252 :IITVTL T0359 12 :KN 2f0aA 260 :EK T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRD T0359 81 :TGQTVLLTLMRR 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2136 Number of alignments=563 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0359)G93 because last residue in template chain is (2f0aA)E342 T0359 5 :TFDVEL 2f0aA 252 :IITVTL T0359 16 :GLGITIAGYIGD 2f0aA 264 :FLGISIVGQSNE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 2f0aA 276 :RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0359 82 :GQTVLLTLMRR 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=2140 Number of alignments=564 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7eA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1n7eA expands to /projects/compbio/data/pdb/1n7e.pdb.gz 1n7eA:# T0359 read from 1n7eA/merged-a2m # 1n7eA read from 1n7eA/merged-a2m # adding 1n7eA to template set # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2142 Number of alignments=565 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2144 Number of alignments=566 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2146 Number of alignments=567 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2148 Number of alignments=568 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2150 Number of alignments=569 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2152 Number of alignments=570 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2154 Number of alignments=571 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2156 Number of alignments=572 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2158 Number of alignments=573 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 2 :M 1n7eA 668 :A T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2161 Number of alignments=574 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2163 Number of alignments=575 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 6 :FDVELTKNVQGLGITIAGYIG 1n7eA 671 :YTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2165 Number of alignments=576 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 6 :FDVELTKNVQGLGITIAG 1n7eA 671 :YTVELKRYGGPLGITISG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1n7eA 689 :TEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=2167 Number of alignments=577 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 6 :FDVELTKNVQGLGITIAGYI 1n7eA 671 :YTVELKRYGGPLGITISGTE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7eA 691 :EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2169 Number of alignments=578 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 95 :TSV 1n7eA 759 :ASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2172 Number of alignments=579 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 95 :TSV 1n7eA 759 :ASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2175 Number of alignments=580 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 95 :TSV 1n7eA 759 :ASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2178 Number of alignments=581 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 95 :TSV 1n7eA 759 :ASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2181 Number of alignments=582 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 5 :TFDVELTKNVQGLGITIAGY 1n7eA 670 :IYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2183 Number of alignments=583 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 5 :TFDVELTKNVQGLGITIAGY 1n7eA 670 :IYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2185 Number of alignments=584 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 96 :SV 1n7eA 757 :QP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2188 Number of alignments=585 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGY 1n7eA 668 :AIIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD T0359 96 :SV 1n7eA 758 :PA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2191 Number of alignments=586 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2193 Number of alignments=587 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2195 Number of alignments=588 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2197 Number of alignments=589 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2199 Number of alignments=590 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2201 Number of alignments=591 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=2203 Number of alignments=592 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2205 Number of alignments=593 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2207 Number of alignments=594 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7eA)G667 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2209 Number of alignments=595 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7eA)G667 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2211 Number of alignments=596 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2213 Number of alignments=597 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0359 93 :GETSV 1n7eA 757 :QPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2216 Number of alignments=598 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=2218 Number of alignments=599 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2220 Number of alignments=600 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2222 Number of alignments=601 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1n7eA)G667 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1n7eA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2224 Number of alignments=602 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9A expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 1ky9A/merged-a2m # 1ky9A read from 1ky9A/merged-a2m # adding 1ky9A to template set # found chain 1ky9A in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0359 1 :SMSET 1ky9A 46 :FQQFF T0359 10 :LTKNVQGLGITIAGY 1ky9A 82 :QKFMALGSGVIIDAD T0359 25 :IGDK 1ky9A 280 :MKVD T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2229 Number of alignments=603 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0359 1 :SMSET 1ky9A 46 :FQQFF T0359 10 :LTKNVQGLGITIAGY 1ky9A 82 :QKFMALGSGVIIDAD T0359 25 :IGDK 1ky9A 280 :MKVD T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2234 Number of alignments=604 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)T11 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0359 8 :VEL 1ky9A 263 :GEL T0359 13 :NVQGLGITIAGYIGDK 1ky9A 268 :MGTELNSELAKAMKVD T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=2238 Number of alignments=605 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)T11 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0359 9 :EL 1ky9A 264 :EL T0359 13 :NVQGLGITIAGYIGDK 1ky9A 268 :MGTELNSELAKAMKVD T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=2242 Number of alignments=606 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2244 Number of alignments=607 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 33 :SGIFVKSITKSSAVEHD 1ky9A 286 :RGAFVSQVLPNSSAAKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 303 :GIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2246 Number of alignments=608 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0359 1 :SMSETFDVELTKNVQGLGITI 1ky9A 30 :NVEGSTTVNTPRMPRNFQQFF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2247 Number of alignments=609 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 9 :ELTK 1ky9A 18 :MLEK T0359 13 :NVQGLGITIAGYIGD 1ky9A 23 :MPSVVSINVEGSTTV T0359 29 :KLE 1ky9A 38 :NTP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2250 Number of alignments=610 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 1 :SMSET 1ky9A 11 :QMPSL T0359 17 :LGITIAGYIG 1ky9A 27 :VSINVEGSTT T0359 27 :DKKLE 1ky9A 39 :TPRMP T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 76 :EVLRHT 1ky9A 322 :AALRAQ T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=2257 Number of alignments=611 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 1 :SMSET 1ky9A 11 :QMPSL T0359 17 :LGITIAGYIG 1ky9A 27 :VSINVEGSTT T0359 27 :DKKLEP 1ky9A 39 :TPRMPR T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=2264 Number of alignments=612 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2266 Number of alignments=613 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 33 :SGIFVKSITKSSAVEHDG 1ky9A 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2268 Number of alignments=614 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 76 :EVLRHT 1ky9A 322 :AALRAQ T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2272 Number of alignments=615 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 32 :PSGIFVKSITKSSAVEHDG 1ky9A 285 :QRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK T0359 95 :TS 1ky9A 350 :VN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2277 Number of alignments=616 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0359 1 :SMSETFDVELTKNVQGLGITI 1ky9A 30 :NVEGSTTVNTPRMPRNFQQFF T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV T0359 97 :V 1ky9A 352 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=2281 Number of alignments=617 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 2 :MSETFDVELTKNV 1ky9A 31 :VEGSTTVNTPRMP T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2284 Number of alignments=618 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 1 :SMSET 1ky9A 11 :QMPSL T0359 17 :LGITIAGYIGDKKLEPS 1ky9A 27 :VSINVEGSTTVNTPRMP T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGETS 1ky9A 334 :GSKLTLGLLRDGKQV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2290 Number of alignments=619 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 1 :SMSET 1ky9A 11 :QMPSL T0359 16 :G 1ky9A 24 :P T0359 17 :LGITIAGYIGDKKLEPS 1ky9A 27 :VSINVEGSTTVNTPRMP T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGETS 1ky9A 334 :GSKLTLGLLRDGKQV Number of specific fragments extracted= 7 number of extra gaps= 0 total=2297 Number of alignments=620 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2299 Number of alignments=621 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2301 Number of alignments=622 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 26 :G 1ky9A 283 :D T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGET 1ky9A 334 :GSKLTLGLLRDGKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2306 Number of alignments=623 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 26 :G 1ky9A 283 :D T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2311 Number of alignments=624 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)L17 because first residue in template chain is (1ky9A)Q11 T0359 18 :GITIAGYIG 1ky9A 12 :MPSLAPMLE T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1ky9A 280 :MKVDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVN Number of specific fragments extracted= 3 number of extra gaps= 0 total=2314 Number of alignments=625 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)N13 because first residue in template chain is (1ky9A)Q11 T0359 14 :VQGLGITIA 1ky9A 12 :MPSLAPMLE T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVN Number of specific fragments extracted= 3 number of extra gaps= 0 total=2317 Number of alignments=626 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 5 :TFDV 1ky9A 34 :STTV T0359 10 :LTKNVQGLGITIAGYIG 1ky9A 80 :QQQKFMALGSGVIIDAD T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1ky9A 280 :MKVDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 76 :EVLRHTGQT 1ky9A 322 :AALRAQVGT T0359 85 :VLLTLMRRGETSV 1ky9A 335 :SKLTLGLLRDGKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2323 Number of alignments=627 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9A)G79 T0359 4 :ETFDVELT 1ky9A 80 :QQQKFMAL T0359 12 :KNVQGL 1ky9A 94 :DADKGY T0359 19 :ITIAGYIG 1ky9A 113 :IKVQLSDG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1ky9A 280 :MKVDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRGE 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=2330 Number of alignments=628 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2332 Number of alignments=629 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 32 :PSGIFVKSITKSSAVEHDG 1ky9A 285 :QRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQA 1ky9A 304 :IKAGDVITSLNGKPISSFAALRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2334 Number of alignments=630 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1ky9A 282 :VDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 76 :EVLRHT 1ky9A 322 :AALRAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2337 Number of alignments=631 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGF 1ky9A 304 :IKAGDVITSLNGKPISSF T0359 72 :QQAVEVLRHT 1ky9A 322 :AALRAQVGTM T0359 82 :GQTVLLTLMRRG 1ky9A 334 :GSKLTLGLLRDG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2341 Number of alignments=632 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9B/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9B expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9B:# T0359 read from 1ky9B/merged-a2m # 1ky9B read from 1ky9B/merged-a2m # adding 1ky9B to template set # found chain 1ky9B in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 1 :SMSET 1ky9B 46 :FQQFF T0359 8 :VELT 1ky9B 80 :QQQK T0359 15 :QGLGITIAGY 1ky9B 87 :LGSGVIIDAD T0359 25 :IGDK 1ky9B 282 :VDAQ T0359 33 :SGIFVKSITKSSAVEHDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETSV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 7 number of extra gaps= 0 total=2348 Number of alignments=633 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 1 :SMSET 1ky9B 46 :FQQFF T0359 8 :VELT 1ky9B 80 :QQQK T0359 15 :QGLGITIAGYIG 1ky9B 87 :LGSGVIIDADKG T0359 27 :DK 1ky9B 284 :AQ T0359 33 :SGIFVKSITKSSAVEHDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETSV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 7 number of extra gaps= 0 total=2355 Number of alignments=634 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 4 :ET 1ky9B 49 :FF T0359 8 :VELT 1ky9B 80 :QQQK T0359 15 :QGLGITIAGY 1ky9B 87 :LGSGVIIDAD T0359 25 :IGDK 1ky9B 282 :VDAQ T0359 33 :SGIFVKSITKSSAVEHDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGET 1ky9B 333 :VGSKLTLGLLRDGKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2362 Number of alignments=635 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)F6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 4 :ET 1ky9B 49 :FF T0359 8 :VELT 1ky9B 80 :QQQK T0359 15 :QGLGITIAGYIG 1ky9B 87 :LGSGVIIDADKG T0359 27 :DK 1ky9B 284 :AQ T0359 33 :SGIFVKSITKSSAVEHDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGET 1ky9B 333 :VGSKLTLGLLRDGKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2369 Number of alignments=636 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2372 Number of alignments=637 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 33 :SGIFVKSITKSSAVEHD 1ky9B 286 :RGAFVSQVLPNSSAAKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 303 :GIKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2375 Number of alignments=638 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)T95 because last residue in template chain is (1ky9B)L446 T0359 1 :SMSETFDVELT 1ky9B 30 :NVEGSTTVNTP T0359 15 :QGLGITI 1ky9B 44 :RNFQQFF T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 401 :LKKGDVIIGANQQAVKN T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=2380 Number of alignments=639 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0359)T95 because last residue in template chain is (1ky9B)L446 T0359 11 :TK 1ky9B 20 :EK T0359 15 :QGLGITIAGYIGD 1ky9B 25 :SVVSINVEGSTTV T0359 29 :KLE 1ky9B 38 :NTP T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 401 :LKKGDVIIGANQQAVKN T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=2386 Number of alignments=640 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)T95 because last residue in template chain is (1ky9B)L446 T0359 4 :ET 1ky9B 14 :SL T0359 17 :LGITIAGYIGD 1ky9B 27 :VSINVEGSTTV T0359 29 :KLE 1ky9B 38 :NTP T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 401 :LKKGDVIIGANQQAVKN T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=2392 Number of alignments=641 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)T95 because last residue in template chain is (1ky9B)L446 T0359 4 :E 1ky9B 14 :S T0359 6 :FDVELTKN 1ky9B 27 :VSINVEGS T0359 23 :GYIGDK 1ky9B 35 :TTVNTP T0359 32 :PS 1ky9B 44 :RN T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGE 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 8 number of extra gaps= 0 total=2400 Number of alignments=642 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2403 Number of alignments=643 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 33 :SGIFVKSITKSSAVEHDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2406 Number of alignments=644 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGE 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2410 Number of alignments=645 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)K281 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 30 :LEPS 1ky9B 282 :VDAQ T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGE 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2415 Number of alignments=646 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 1 :SMSETFDVELT 1ky9B 30 :NVEGSTTVNTP T0359 15 :QGLGITI 1ky9B 44 :RNFQQFF T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETS 1ky9B 333 :VGSKLTLGLLRDGKQV T0359 97 :V 1ky9B 352 :L Number of specific fragments extracted= 6 number of extra gaps= 0 total=2421 Number of alignments=647 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)V14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 2 :MSETFDVELT 1ky9B 31 :VEGSTTVNTP T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETS 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2425 Number of alignments=648 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)S33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 4 :ET 1ky9B 14 :SL T0359 17 :LGITIAGYIGDKKL 1ky9B 27 :VSINVEGSTTVNTP T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGETS 1ky9B 334 :GSKLTLGLLRDGKQV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2431 Number of alignments=649 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 4 :E 1ky9B 14 :S T0359 16 :G 1ky9B 25 :S T0359 17 :LGITIAG 1ky9B 27 :VSINVEG T0359 24 :YIGDK 1ky9B 36 :TVNTP T0359 32 :PS 1ky9B 44 :RN T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGETS 1ky9B 334 :GSKLTLGLLRDGKQV Number of specific fragments extracted= 9 number of extra gaps= 0 total=2440 Number of alignments=650 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2443 Number of alignments=651 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGE 1ky9B 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2446 Number of alignments=652 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGET 1ky9B 334 :GSKLTLGLLRDGKQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2450 Number of alignments=653 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)K281 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 18 :G 1ky9B 266 :G T0359 24 :YI 1ky9B 270 :TE T0359 30 :L 1ky9B 282 :V T0359 31 :EPSGIFVKSITKSSAVEHDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 82 :GQTVLLTLMRRGET 1ky9B 334 :GSKLTLGLLRDGKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2457 Number of alignments=654 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 20 :TIA 1ky9B 14 :SLA T0359 26 :G 1ky9B 20 :E T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETSV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2462 Number of alignments=655 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0359)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0359)L78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0359 16 :GLG 1ky9B 14 :SLA T0359 22 :A 1ky9B 20 :E T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0359 81 :TGQTVLLTLMRRGETSV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2467 Number of alignments=656 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)N13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 14 :VQ 1ky9B 14 :SL T0359 16 :GLGITIAGYIG 1ky9B 26 :VVSINVEGSTT T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 81 :TGQTVLLTLMRRGET 1ky9B 333 :VGSKLTLGLLRDGKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2473 Number of alignments=657 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)K281 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 17 :LGITIAGYIG 1ky9B 27 :VSINVEGSTT T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 81 :TGQTVLLTLMRRGETSV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2478 Number of alignments=658 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0359 34 :GIFVKSITKSSAVEHDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAV 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2480 Number of alignments=659 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0359 32 :PSGIFVKSITKSSAVEHDG 1ky9B 285 :QRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQA 1ky9B 304 :IKAGDVITSLNGKPISSFAALRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2482 Number of alignments=660 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0359)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 T0359 22 :AGYIG 1ky9B 270 :TELNS T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVE 1ky9B 321 :FAALRA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2486 Number of alignments=661 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0359)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0359)H80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0359 19 :IT 1ky9B 265 :LG T0359 24 :YIGDKK 1ky9B 270 :TELNSE T0359 30 :LEPSGIFVKSITKSSAVEHDG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAG T0359 52 :IQIGDQIIAVDGTNLQG 1ky9B 304 :IKAGDVITSLNGKPISS T0359 71 :NQQAVEVLR 1ky9B 321 :FAALRAQVG T0359 81 :TGQTVLLTLMRRG 1ky9B 333 :VGSKLTLGLLRDG Number of specific fragments extracted= 6 number of extra gaps= 0 total=2492 Number of alignments=662 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zokA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zokA expands to /projects/compbio/data/pdb/1zok.pdb.gz 1zokA:# T0359 read from 1zokA/merged-a2m # 1zokA read from 1zokA/merged-a2m # adding 1zokA to template set # found chain 1zokA in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1zokA 224 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2494 Number of alignments=663 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1zokA 224 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2496 Number of alignments=664 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2498 Number of alignments=665 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2500 Number of alignments=666 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2502 Number of alignments=667 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2504 Number of alignments=668 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0359)T95 because last residue in template chain is (1zokA)F313 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2506 Number of alignments=669 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0359)T95 because last residue in template chain is (1zokA)F313 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2508 Number of alignments=670 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0359)T95 because last residue in template chain is (1zokA)F313 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2510 Number of alignments=671 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2512 Number of alignments=672 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0359)T95 because last residue in template chain is (1zokA)F313 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 248 :GDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2514 Number of alignments=673 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0359)T95 because last residue in template chain is (1zokA)F313 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1zokA 248 :GDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2516 Number of alignments=674 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1zokA)E221 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1zokA 222 :YEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1zokA 248 :GDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2518 Number of alignments=675 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0359 6 :FDVELTKNVQGLGITIAGYIGDKK 1zokA 223 :EEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1zokA 248 :GDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2520 Number of alignments=676 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mfgA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1mfgA/merged-a2m # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2526 Number of alignments=677 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2532 Number of alignments=678 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 4 :ETFDVELTKNV 1mfgA 1279 :MEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRR 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2538 Number of alignments=679 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 6 :FDVELTKNV 1mfgA 1281 :IRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2544 Number of alignments=680 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2550 Number of alignments=681 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKN 1mfgA 1278 :SMEIRVRVEKD T0359 15 :QGLGITIAGYIG 1mfgA 1289 :PELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2556 Number of alignments=682 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2562 Number of alignments=683 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 5 :TFDVELTKN 1mfgA 1280 :EIRVRVEKD T0359 15 :QGLGITIAGYIG 1mfgA 1289 :PELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2568 Number of alignments=684 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 1 :SM 1mfgA 1277 :GS T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0359 28 :KKLEPSGIFVKSITKSSAV 1mfgA 1306 :FRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2574 Number of alignments=685 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 1 :SM 1mfgA 1277 :GS T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0359 28 :KKLEPSGIFVKSITKSSAV 1mfgA 1306 :FRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2580 Number of alignments=686 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 6 :FDVELTKNVQGLGITIAGYIGD 1mfgA 1280 :EIRVRVEKDPELGFSISGGVGG T0359 28 :KKLEPSGIFVKSITKSSAV 1mfgA 1306 :FRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRR 1mfgA 1365 :IVRE Number of specific fragments extracted= 5 number of extra gaps= 2 total=2585 Number of alignments=687 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 6 :FDVELTKNVQGLGITIAGYIGD 1mfgA 1280 :EIRVRVEKDPELGFSISGGVGG T0359 28 :KKLEPSGIFVKSITKSSAV 1mfgA 1306 :FRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRR 1mfgA 1365 :IVRE Number of specific fragments extracted= 5 number of extra gaps= 2 total=2590 Number of alignments=688 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 17 :LGITIAGYIGDK 1mfgA 1291 :LGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAVEH 1mfgA 1307 :RPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMR 1mfgA 1365 :IVR Number of specific fragments extracted= 5 number of extra gaps= 2 total=2595 Number of alignments=689 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 16 :GLGITIAGYIGDK 1mfgA 1290 :ELGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAV 1mfgA 1307 :RPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRR 1mfgA 1365 :IVRE Number of specific fragments extracted= 5 number of extra gaps= 2 total=2600 Number of alignments=690 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 5 :TFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKD T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2606 Number of alignments=691 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 1 :SMSE 1mfgA 1277 :GSME T0359 6 :FDVELTKNV 1mfgA 1281 :IRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2613 Number of alignments=692 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV T0359 96 :SV 1mfgA 1370 :SS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2620 Number of alignments=693 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV T0359 96 :SV 1mfgA 1370 :SS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2627 Number of alignments=694 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 11 :TKNVQGLGITIAGYIG 1mfgA 1285 :VEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2632 Number of alignments=695 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 8 :VELTKN 1mfgA 1283 :VRVEKD T0359 15 :QGLGITIAGYIG 1mfgA 1289 :PELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2638 Number of alignments=696 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2644 Number of alignments=697 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 5 :TFDVELTKNV 1mfgA 1280 :EIRVRVEKDP T0359 16 :GLGITIAGYIG 1mfgA 1290 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2650 Number of alignments=698 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 5 :TFDVELTKNVQG 1mfgA 1278 :SMEIRVRVEKDP T0359 17 :LGITIAGYI 1mfgA 1291 :LGFSISGGV T0359 26 :GDKKLEPSGIFVKSITKSSAVE 1mfgA 1304 :NPFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2656 Number of alignments=699 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 2 :MS 1mfgA 1278 :SM T0359 5 :TFDVELTKN 1mfgA 1280 :EIRVRVEKD T0359 15 :QGLGITIAGYIGDKKL 1mfgA 1289 :PELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 1mfgA 1309 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2663 Number of alignments=700 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 1mfgA 1290 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 1mfgA 1309 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2669 Number of alignments=701 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 1mfgA 1290 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2675 Number of alignments=702 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)E4 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 5 :TFDVELTKNVQG 1mfgA 1278 :SMEIRVRVEKDP T0359 17 :LGITIAGYI 1mfgA 1291 :LGFSISGGV T0359 26 :GDKKLEPSGIFVKSITKSSAVE 1mfgA 1304 :NPFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2681 Number of alignments=703 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 8 :VELTKN 1mfgA 1283 :VRVEKD T0359 15 :QGLGITIAGYIGDKKL 1mfgA 1289 :PELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 1mfgA 1309 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRG 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2687 Number of alignments=704 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 1mfgA 1290 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 1mfgA 1309 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2693 Number of alignments=705 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNV 1mfgA 1278 :SMEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 1mfgA 1290 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2699 Number of alignments=706 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2704 Number of alignments=707 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2709 Number of alignments=708 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2715 Number of alignments=709 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2721 Number of alignments=710 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMR 1mfgA 1365 :IVR Number of specific fragments extracted= 5 number of extra gaps= 2 total=2726 Number of alignments=711 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0359 7 :DVELTKNVQGLGITIAGYIG 1mfgA 1281 :IRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMR 1mfgA 1365 :IVR Number of specific fragments extracted= 5 number of extra gaps= 2 total=2731 Number of alignments=712 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2737 Number of alignments=713 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0359)Q83 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0359)T84 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0359)L87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0359)T88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0359)T95 because last residue in template chain is (1mfgA)S1371 T0359 3 :SETFDVELTKNVQ 1mfgA 1278 :SMEIRVRVEKDPE T0359 17 :LGITIAGYIG 1mfgA 1291 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 1mfgA 1305 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0359 85 :VL 1mfgA 1361 :VE T0359 89 :LMRRGE 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2743 Number of alignments=714 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b8qA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b8qA expands to /projects/compbio/data/pdb/1b8q.pdb.gz 1b8qA:# T0359 read from 1b8qA/merged-a2m # 1b8qA read from 1b8qA/merged-a2m # adding 1b8qA to template set # found chain 1b8qA in template set T0359 1 :SMSETFDVELTKNVQ 1b8qA 5 :IEPNVISVRLFKRKV T0359 16 :GLGITIAGYIG 1b8qA 21 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1b8qA 84 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2747 Number of alignments=715 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSETFDVELTKNVQ 1b8qA 5 :IEPNVISVRLFKRKV T0359 16 :GLGITIAGYIG 1b8qA 21 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1b8qA 84 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2751 Number of alignments=716 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNVQ 1b8qA 8 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1b8qA 21 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2755 Number of alignments=717 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNVQ 1b8qA 8 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1b8qA 21 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1b8qA 84 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2759 Number of alignments=718 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKN 1b8qA 8 :NVISVRLFKR T0359 14 :VQGLGITIAGY 1b8qA 19 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGETS 1b8qA 85 :THVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2763 Number of alignments=719 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 6 :FDVELTKN 1b8qA 10 :ISVRLFKR T0359 14 :VQGLGITIAGY 1b8qA 19 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGET 1b8qA 85 :THVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2767 Number of alignments=720 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 23 :GYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1b8qA 23 :GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2768 Number of alignments=721 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 12 :KNVQGLGITI 1b8qA 17 :RKVGGLGFLV T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1b8qA 27 :KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2770 Number of alignments=722 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSETFDVELTKNV 1b8qA 5 :IEPNVISVRLFKRK T0359 15 :QGLGITIAG 1b8qA 20 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 29 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG T0359 95 :TSV 1b8qA 125 :KAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2775 Number of alignments=723 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 2 :MSETFDVELTKNV 1b8qA 6 :EPNVISVRLFKRK T0359 15 :QGLGITIAGY 1b8qA 20 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG T0359 95 :TSV 1b8qA 125 :KAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2780 Number of alignments=724 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMS 1b8qA 1 :GSH T0359 4 :ETFDVELTKNV 1b8qA 8 :NVISVRLFKRK T0359 15 :QGLGITIAG 1b8qA 20 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 29 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG T0359 95 :TSV 1b8qA 125 :KAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2786 Number of alignments=725 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSE 1b8qA 1 :GSHM T0359 5 :TFDVELTKNV 1b8qA 9 :VISVRLFKRK T0359 15 :QGLGITIAGYI 1b8qA 20 :GGLGFLVKERV T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 31 :SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG T0359 95 :TSV 1b8qA 125 :KAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2792 Number of alignments=726 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 2 :MSETFDVELTKNV 1b8qA 6 :EPNVISVRLFKRK T0359 15 :QGLGITIAG 1b8qA 20 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 29 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2796 Number of alignments=727 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 3 :SETFDVELTKNV 1b8qA 7 :PNVISVRLFKRK T0359 15 :QGLGITIAGY 1b8qA 20 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRG 1b8qA 84 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2800 Number of alignments=728 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNV 1b8qA 8 :NVISVRLFKRK T0359 15 :QGLGITIAG 1b8qA 20 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 29 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG T0359 96 :S 1b8qA 102 :E Number of specific fragments extracted= 5 number of extra gaps= 0 total=2805 Number of alignments=729 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNV 1b8qA 8 :NVISVRLFKRK T0359 15 :QGLGITIAGYI 1b8qA 20 :GGLGFLVKERV T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 31 :SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1b8qA 84 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2809 Number of alignments=730 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSETFDVELTKNV 1b8qA 5 :IEPNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2813 Number of alignments=731 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 2 :MSETFDVELTKNV 1b8qA 6 :EPNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2817 Number of alignments=732 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMS 1b8qA 1 :GSH T0359 4 :ETFDVELTKNV 1b8qA 8 :NVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=2822 Number of alignments=733 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSET 1b8qA 1 :GSHMI T0359 6 :FDVELTK 1b8qA 10 :ISVRLFK T0359 13 :NVQGLGITIAGYIG 1b8qA 18 :KVGGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=2827 Number of alignments=734 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 3 :SETFDVELTKNV 1b8qA 7 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 83 :SETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2831 Number of alignments=735 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 3 :SETFDVELTKNV 1b8qA 7 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRR 1b8qA 84 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2835 Number of alignments=736 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNV 1b8qA 8 :NVISVRLFKRK T0359 15 :QGLGITIAGYIG 1b8qA 20 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2839 Number of alignments=737 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSET 1b8qA 1 :GSHMI T0359 6 :FDVELTK 1b8qA 10 :ISVRLFK T0359 13 :NVQGLGITIAGYIG 1b8qA 18 :KVGGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=2844 Number of alignments=738 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :S 1b8qA 1 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1b8qA 7 :PNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2847 Number of alignments=739 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :S 1b8qA 1 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1b8qA 7 :PNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2850 Number of alignments=740 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSE 1b8qA 1 :GSHM T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2853 Number of alignments=741 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 1 :SMSE 1b8qA 1 :GSHM T0359 5 :TFDVELTK 1b8qA 9 :VISVRLFK T0359 13 :NVQGLGITIAGYIGD 1b8qA 18 :KVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0359 84 :TVLLTLMRRGE 1b8qA 86 :HVVLILRGPEG T0359 95 :TSV 1b8qA 125 :KAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2859 Number of alignments=742 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1b8qA 7 :PNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2861 Number of alignments=743 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2863 Number of alignments=744 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1b8qA 9 :VISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2865 Number of alignments=745 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0359 2 :MSETFDVELTK 1b8qA 6 :EPNVISVRLFK T0359 13 :NVQGLGITIAGYIGD 1b8qA 18 :KVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2868 Number of alignments=746 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nteA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nteA expands to /projects/compbio/data/pdb/1nte.pdb.gz 1nteA:Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 281, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 283, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 285, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 287, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 289, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 291, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 595, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 597, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 599, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 601, because occupancy 0.300 <= existing 0.700 in 1nteA # T0359 read from 1nteA/merged-a2m # 1nteA read from 1nteA/merged-a2m # adding 1nteA to template set # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2873 Number of alignments=747 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2878 Number of alignments=748 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 5 number of extra gaps= 1 total=2883 Number of alignments=749 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2887 Number of alignments=750 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNV 1nteA 196 :PRTITMHKDS T0359 15 :QGLGITIA 1nteA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1nteA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2892 Number of alignments=751 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNV 1nteA 196 :PRTITMHKDS T0359 15 :QGLGITIA 1nteA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1nteA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2897 Number of alignments=752 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELTKNV 1nteA 196 :PRTITMHKDS T0359 15 :QGLGITIA 1nteA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1nteA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 4 number of extra gaps= 1 total=2901 Number of alignments=753 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0359 6 :FDVELTKNV 1nteA 197 :RTITMHKDS T0359 15 :QGLGITIA 1nteA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1nteA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2905 Number of alignments=754 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0359 37 :VKSITKSSAVEHDGRIQ 1nteA 218 :ITSIVKDSSAARNGLLT T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1nteA 235 :EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2907 Number of alignments=755 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0359 37 :VKSITKSSAVEHDGRIQ 1nteA 218 :ITSIVKDSSAARNGLLT T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 235 :EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2909 Number of alignments=756 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2914 Number of alignments=757 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2919 Number of alignments=758 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2924 Number of alignments=759 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIA 1nteA 209 :VGFIFK T0359 32 :PS 1nteA 215 :NG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2930 Number of alignments=760 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2935 Number of alignments=761 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2939 Number of alignments=762 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2944 Number of alignments=763 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIA 1nteA 209 :VGFIFK T0359 32 :PS 1nteA 215 :NG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2950 Number of alignments=764 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2955 Number of alignments=765 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2960 Number of alignments=766 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2965 Number of alignments=767 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIA 1nteA 209 :VGFIFK T0359 32 :PS 1nteA 215 :NG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2971 Number of alignments=768 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2975 Number of alignments=769 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2979 Number of alignments=770 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIAGY 1nteA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2984 Number of alignments=771 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTKNVQG 1nteA 196 :PRTITMHKDSTG T0359 17 :LGITIA 1nteA 209 :VGFIFK T0359 32 :PS 1nteA 215 :NG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 6 number of extra gaps= 1 total=2990 Number of alignments=772 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :S 1nteA 192 :G T0359 4 :ETFDVELTKNVQGLGITIAGY 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2994 Number of alignments=773 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 4 :ETFDVELTKNVQGLGITIAGYI 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0359 37 :VKSITKSSAVEHDG 1nteA 218 :ITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2998 Number of alignments=774 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELTK 1nteA 196 :PRTITMHK T0359 13 :NVQGLGITIAGY 1nteA 205 :STGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=3003 Number of alignments=775 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0359)G93 because last residue in template chain is (1nteA)F273 T0359 1 :SM 1nteA 192 :GA T0359 5 :TFDVELT 1nteA 196 :PRTITMH T0359 12 :KNVQGLGITIAGY 1nteA 204 :DSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=3008 Number of alignments=776 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 4 :ETFDVELTKNVQGLGITIAGY 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 1 total=3011 Number of alignments=777 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYI 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0359 37 :VKSITKSSAVEHDG 1nteA 218 :ITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3014 Number of alignments=778 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 4 :ETFDVELTKNVQGLGITIAGY 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=3017 Number of alignments=779 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0359 5 :TFDVELT 1nteA 196 :PRTITMH T0359 12 :KNVQGLGITIAGY 1nteA 204 :DSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1nteA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=3021 Number of alignments=780 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2fe5A/merged-a2m # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKLEPS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3023 Number of alignments=781 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKLEPS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3025 Number of alignments=782 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKLEPS 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIGNQHIPGD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3027 Number of alignments=783 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKLEPS 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIGNQHIPGD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3029 Number of alignments=784 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3031 Number of alignments=785 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3033 Number of alignments=786 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3035 Number of alignments=787 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3037 Number of alignments=788 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 1 :SM 2fe5A 221 :SM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3040 Number of alignments=789 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 1 :SM 2fe5A 221 :SM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3043 Number of alignments=790 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIG 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3045 Number of alignments=791 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 6 :FDVELTKNVQGLGITIAGYIG 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3047 Number of alignments=792 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 6 :FDVELTKNVQGLGITIAGYIGDKKLEPSG 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIGNQHIPGDN T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 255 :IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3049 Number of alignments=793 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 6 :FDVELTKNVQGLGITIAGYIGDKKLEP 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIGNQHIPG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 253 :NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3051 Number of alignments=794 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3053 Number of alignments=795 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3055 Number of alignments=796 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3057 Number of alignments=797 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3059 Number of alignments=798 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3061 Number of alignments=799 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3063 Number of alignments=800 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3065 Number of alignments=801 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3067 Number of alignments=802 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3069 Number of alignments=803 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3071 Number of alignments=804 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3073 Number of alignments=805 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3075 Number of alignments=806 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3077 Number of alignments=807 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3079 Number of alignments=808 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3081 Number of alignments=809 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKKL 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3083 Number of alignments=810 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3085 Number of alignments=811 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3087 Number of alignments=812 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3089 Number of alignments=813 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3091 Number of alignments=814 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3093 Number of alignments=815 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3095 Number of alignments=816 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0359)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0359)E94 because last residue in template chain is (2fe5A)S314 T0359 3 :SETFDVELTKNVQGLGITIAGYIGDKK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 250 :PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3097 Number of alignments=817 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fe5A 247 :QHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3099 Number of alignments=818 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r6jA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1r6jA/merged-a2m # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3103 Number of alignments=819 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3107 Number of alignments=820 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3111 Number of alignments=821 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 3 :SETFDVELTKNVQG 1r6jA 194 :MDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3115 Number of alignments=822 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3119 Number of alignments=823 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3123 Number of alignments=824 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3127 Number of alignments=825 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 3 :SETFDVELTKNVQG 1r6jA 194 :MDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3131 Number of alignments=826 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNV 1r6jA 192 :GAMDPRTITMHKDS T0359 15 :QGLGITIA 1r6jA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1r6jA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3135 Number of alignments=827 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNV 1r6jA 192 :GAMDPRTITMHKDS T0359 15 :QGLGITIA 1r6jA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1r6jA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3139 Number of alignments=828 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 4 :ETFDVELTKNV 1r6jA 195 :DPRTITMHKDS T0359 15 :QGLGITIA 1r6jA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1r6jA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3143 Number of alignments=829 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 5 :TFDVELTKNV 1r6jA 196 :PRTITMHKDS T0359 15 :QGLGITIA 1r6jA 207 :GHVGFIFK T0359 34 :GIFVKSITKSSAVEHDG 1r6jA 215 :NGKITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3147 Number of alignments=830 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 37 :VKSITKSSAVEHDGRIQ 1r6jA 218 :ITSIVKDSSAARNGLLT T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1r6jA 235 :EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 2 number of extra gaps= 0 total=3149 Number of alignments=831 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 37 :VKSITKSSAVEHDGRIQ 1r6jA 218 :ITSIVKDSSAARNGLLT T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 235 :EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3151 Number of alignments=832 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3155 Number of alignments=833 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3159 Number of alignments=834 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3163 Number of alignments=835 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQ 1r6jA 192 :GAMDPRTITMHKDST T0359 16 :GLGITIAGY 1r6jA 208 :HVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3167 Number of alignments=836 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3171 Number of alignments=837 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 3 :SETFDVELTKNVQG 1r6jA 194 :MDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3175 Number of alignments=838 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3179 Number of alignments=839 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQ 1r6jA 192 :GAMDPRTITMHKDST T0359 16 :GLGITIAGY 1r6jA 208 :HVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3183 Number of alignments=840 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3187 Number of alignments=841 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3191 Number of alignments=842 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3195 Number of alignments=843 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3199 Number of alignments=844 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 4 :ETFDVELTKNVQG 1r6jA 195 :DPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3203 Number of alignments=845 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 4 :ETFDVELTKNVQG 1r6jA 195 :DPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3207 Number of alignments=846 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3211 Number of alignments=847 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 1 :SMSETFDVELTKNVQG 1r6jA 192 :GAMDPRTITMHKDSTG T0359 17 :LGITIAGY 1r6jA 209 :VGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3215 Number of alignments=848 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :S 1r6jA 192 :G T0359 2 :MSETFDVELTKNVQGLGITIAGY 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3219 Number of alignments=849 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SM 1r6jA 192 :GA T0359 3 :SETFDVELTKNVQGLGITIAGYI 1r6jA 195 :DPRTITMHKDSTGHVGFIFKNGK T0359 37 :VKSITKSSAVEHDG 1r6jA 218 :ITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3223 Number of alignments=850 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELTK 1r6jA 192 :GAMDPRTITMHK T0359 13 :NVQGLGITIAGY 1r6jA 205 :STGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3227 Number of alignments=851 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0359)G93 because last residue in template chain is (1r6jA)F273 T0359 1 :SMSETFDVELT 1r6jA 192 :GAMDPRTITMH T0359 12 :KNVQGLGITIAGY 1r6jA 204 :DSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3231 Number of alignments=852 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=3234 Number of alignments=853 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYI 1r6jA 196 :PRTITMHKDSTGHVGFIFKNGK T0359 37 :VKSITKSSAVEHDG 1r6jA 218 :ITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3237 Number of alignments=854 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3240 Number of alignments=855 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0359 3 :SETFDVELT 1r6jA 194 :MDPRTITMH T0359 12 :KNVQGLGITIAGY 1r6jA 204 :DSTGHVGFIFKNG T0359 36 :FVKSITKSSAVEHDG 1r6jA 217 :KITSIVKDSSAARNG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3244 Number of alignments=856 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1qavA/merged-a2m # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 4 :ETFDVELTKN 1qavA 78 :QRRRVTVRKA T0359 14 :VQGLGITIAGY 1qavA 89 :AGGLGISIKGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 101 :ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3247 Number of alignments=857 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 6 :FDVELTKN 1qavA 80 :RRVTVRKA T0359 14 :VQGLGITIAGY 1qavA 89 :AGGLGISIKGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 101 :ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3250 Number of alignments=858 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3253 Number of alignments=859 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3256 Number of alignments=860 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3259 Number of alignments=861 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTKNV 1qavA 78 :QRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3262 Number of alignments=862 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTK 1qavA 75 :GSLQRRRVTVRK T0359 13 :NVQGLGITIAGYIGDKK 1qavA 88 :DAGGLGISIKGGRENKM T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 105 :PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3265 Number of alignments=863 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTK 1qavA 75 :GSLQRRRVTVRK T0359 13 :NVQGLGITIAGYIGDKK 1qavA 88 :DAGGLGISIKGGRENKM T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 105 :PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3268 Number of alignments=864 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 4 :ETFDVELTK 1qavA 78 :QRRRVTVRK T0359 13 :NVQGLGITIAGYIGDKK 1qavA 88 :DAGGLGISIKGGRENKM T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 105 :PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3271 Number of alignments=865 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTK 1qavA 78 :QRRRVTVRK T0359 13 :NVQGLGITIAGYIGDKK 1qavA 88 :DAGGLGISIKGGRENKM T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 105 :PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3274 Number of alignments=866 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIGD 1qavA 90 :GGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3277 Number of alignments=867 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIGD 1qavA 90 :GGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3280 Number of alignments=868 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 2 :MSETFDVELTKNV 1qavA 76 :SLQRRRVTVRKAD T0359 15 :QGLGITIAGYIGD 1qavA 90 :GGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3283 Number of alignments=869 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTKNV 1qavA 78 :QRRRVTVRKAD T0359 15 :QGLGITIAGYIGD 1qavA 90 :GGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3286 Number of alignments=870 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 16 :GLGITIAGYIGDKK 1qavA 91 :GLGISIKGGRENKM T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1qavA 105 :PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3288 Number of alignments=871 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 13 :NVQGLGITIAGYIGDK 1qavA 88 :DAGGLGISIKGGRENK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1qavA 104 :MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3290 Number of alignments=872 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTK 1qavA 75 :GSLQRRRVTVRK T0359 13 :NVQGLGITIAGY 1qavA 88 :DAGGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3293 Number of alignments=873 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGY 1qavA 90 :GGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3296 Number of alignments=874 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGY 1qavA 90 :GGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3299 Number of alignments=875 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNVQ 1qavA 75 :GSLQRRRVTVRKADA T0359 16 :GLGITIAGY 1qavA 91 :GLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3302 Number of alignments=876 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTK 1qavA 78 :QRRRVTVRK T0359 13 :NVQGLGITIAGY 1qavA 88 :DAGGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3305 Number of alignments=877 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTKNV 1qavA 78 :QRRRVTVRKAD T0359 15 :QGLGITIAGY 1qavA 90 :GGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3308 Number of alignments=878 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGY 1qavA 90 :GGLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3311 Number of alignments=879 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 2 :MSETFDVELTKNVQ 1qavA 76 :SLQRRRVTVRKADA T0359 16 :GLGITIAGY 1qavA 91 :GLGISIKGG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 100 :RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3314 Number of alignments=880 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3317 Number of alignments=881 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3320 Number of alignments=882 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3323 Number of alignments=883 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNVQG 1qavA 75 :GSLQRRRVTVRKADAG T0359 17 :LGITIAGYIG 1qavA 92 :LGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3326 Number of alignments=884 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTKNV 1qavA 78 :QRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3329 Number of alignments=885 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 5 :TFDVELTKNV 1qavA 79 :RRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3332 Number of alignments=886 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNV 1qavA 75 :GSLQRRRVTVRKAD T0359 15 :QGLGITIAGYIG 1qavA 90 :GGLGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3335 Number of alignments=887 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 1 :SMSETFDVELTKNVQG 1qavA 75 :GSLQRRRVTVRKADAG T0359 17 :LGITIAGYIG 1qavA 92 :LGISIKGGRE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 102 :NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3338 Number of alignments=888 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :S 1qavA 75 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1qavA 77 :LQRRRVTVRKADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3341 Number of alignments=889 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :S 1qavA 75 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1qavA 77 :LQRRRVTVRKADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3344 Number of alignments=890 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTK 1qavA 75 :GSLQRRRVTVRK T0359 13 :NVQGLGITIAGYIGD 1qavA 88 :DAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3347 Number of alignments=891 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELT 1qavA 75 :GSLQRRRVTVR T0359 12 :KNVQGLGITIAGYIGD 1qavA 87 :ADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 3 number of extra gaps= 0 total=3350 Number of alignments=892 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1qavA 77 :LQRRRVTVRKADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=3352 Number of alignments=893 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1qavA 79 :RRRVTVRKADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3354 Number of alignments=894 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1qavA)K164 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=3356 Number of alignments=895 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0359 2 :MSETFDVELT 1qavA 76 :SLQRRRVTVR T0359 12 :KNVQGLGITIAGYIGD 1qavA 87 :ADAGGLGISIKGGREN T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1qavA 103 :KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3359 Number of alignments=896 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qavB expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavB:# T0359 read from 1qavB/merged-a2m # 1qavB read from 1qavB/merged-a2m # adding 1qavB to template set # found chain 1qavB in template set T0359 4 :ETFDVELTKN 1qavB 1014 :NVISVRLFKR T0359 14 :VQGLGITIAGY 1qavB 1025 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGETS 1qavB 1091 :THVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3363 Number of alignments=897 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 6 :FDVELTKN 1qavB 1016 :ISVRLFKR T0359 14 :VQGLGITIAGY 1qavB 1025 :VGGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0359 83 :QTVLLTLMRRGET 1qavB 1091 :THVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3367 Number of alignments=898 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 1 :SM 1qavB 1012 :QP T0359 4 :ETFDVELTKNVQ 1qavB 1014 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1qavB 1027 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1qavB 1089 :SETHVVLILRGPEGFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3372 Number of alignments=899 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 1 :SM 1qavB 1012 :QP T0359 4 :ETFDVELTKNVQ 1qavB 1014 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1qavB 1027 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETSV 1qavB 1089 :SETHVVLILRGPEGFT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3377 Number of alignments=900 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 4 :ETFDVELTKNVQ 1qavB 1014 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1qavB 1027 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1qavB 1089 :SETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3381 Number of alignments=901 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 4 :ETFDVELTKNVQ 1qavB 1014 :NVISVRLFKRKV T0359 16 :GLGITIAGYIG 1qavB 1027 :GLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1qavB 1089 :SETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3385 Number of alignments=902 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 23 :GYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1qavB 1029 :GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG Number of specific fragments extracted= 1 number of extra gaps= 0 total=3386 Number of alignments=903 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 12 :KNVQGLGITI 1qavB 1023 :RKVGGLGFLV T0359 27 :DKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1qavB 1033 :KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3388 Number of alignments=904 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAG 1qavB 1026 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1035 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG T0359 95 :TSV 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3393 Number of alignments=905 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGY 1qavB 1026 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG T0359 95 :TSV 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3398 Number of alignments=906 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAG 1qavB 1026 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1035 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG T0359 95 :TSV 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3403 Number of alignments=907 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNVQ 1qavB 1013 :PNVISVRLFKRKV T0359 16 :GLGITIAGY 1qavB 1027 :GLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG T0359 95 :TSV 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3408 Number of alignments=908 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAG 1qavB 1026 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1035 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3412 Number of alignments=909 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGY 1qavB 1026 :GGLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRG 1qavB 1090 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3416 Number of alignments=910 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAG 1qavB 1026 :GGLGFLVKE T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1035 :RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3420 Number of alignments=911 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNVQ 1qavB 1013 :PNVISVRLFKRKV T0359 16 :GLGITIAGY 1qavB 1027 :GLGFLVKER T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGE 1qavB 1090 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3424 Number of alignments=912 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qavB 1090 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3428 Number of alignments=913 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qavB 1090 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3432 Number of alignments=914 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qavB 1090 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3436 Number of alignments=915 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qavB 1090 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3440 Number of alignments=916 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGETS 1qavB 1089 :SETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3444 Number of alignments=917 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRR 1qavB 1090 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3448 Number of alignments=918 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3452 Number of alignments=919 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELTKNV 1qavB 1013 :PNVISVRLFKRK T0359 15 :QGLGITIAGYIG 1qavB 1026 :GGLGFLVKERVS T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0359 82 :GQTVLLTLMRRGET 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3456 Number of alignments=920 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=3458 Number of alignments=921 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=3460 Number of alignments=922 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0359 85 :VLLTLMRRGE 1qavB 1093 :VVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3463 Number of alignments=923 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1qavB)Q1012 T0359 3 :SETFDVELT 1qavB 1013 :PNVISVRLF T0359 12 :KNVQGLGITIAGYIGD 1qavB 1023 :RKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0359 85 :VLLTLMRRGE 1qavB 1093 :VVLILRGPEG T0359 95 :TSV 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3468 Number of alignments=924 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3470 Number of alignments=925 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1qavB 1016 :ISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3472 Number of alignments=926 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR Number of specific fragments extracted= 2 number of extra gaps= 0 total=3474 Number of alignments=927 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0359 3 :SETFDVELT 1qavB 1013 :PNVISVRLF T0359 12 :KNVQGLGITIAGYIGD 1qavB 1023 :RKVGGLGFLVKERVSK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0359 85 :VLLTLMRRGE 1qavB 1093 :VVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3478 Number of alignments=928 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m5zA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m5zA expands to /projects/compbio/data/pdb/1m5z.pdb.gz 1m5zA:# T0359 read from 1m5zA/merged-a2m # 1m5zA read from 1m5zA/merged-a2m # adding 1m5zA to template set # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3482 Number of alignments=929 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3486 Number of alignments=930 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3490 Number of alignments=931 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3494 Number of alignments=932 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 18 :GITIAGYIGDKKLEPSGIFVKSITKSSAVEHDG 1m5zA 32 :GMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR Number of specific fragments extracted= 2 number of extra gaps= 0 total=3496 Number of alignments=933 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 16 :GLGITIA 1m5zA 35 :DFGFSVA T0359 28 :KKLEPSGIFVKSITKSSAVE 1m5zA 42 :DGLLEKGVYVKNIRPAGPGD T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1m5zA 62 :LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3499 Number of alignments=934 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAG 1m5zA 35 :DFGFSVAD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1m5zA 43 :GLLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3503 Number of alignments=935 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3507 Number of alignments=936 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSE 1m5zA 16 :SPTP T0359 5 :TFDVELTKNVQ 1m5zA 22 :LHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3512 Number of alignments=937 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSE 1m5zA 16 :SPTP T0359 5 :TFDVELTKNVQ 1m5zA 22 :LHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3517 Number of alignments=938 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAG 1m5zA 35 :DFGFSVAD T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1m5zA 43 :GLLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3521 Number of alignments=939 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3525 Number of alignments=940 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 2 :MSETFDVELTKNVQ 1m5zA 19 :PVELHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3529 Number of alignments=941 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 1 :SMSE 1m5zA 16 :SPTP T0359 5 :TFDVELTKNVQ 1m5zA 22 :LHKVTLYKDSG T0359 16 :GLGITIAGY 1m5zA 35 :DFGFSVADG T0359 30 :LEPSGIFVKSITKSSAVEHDG 1m5zA 44 :LLEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3534 Number of alignments=942 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3538 Number of alignments=943 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSETFDVELTKNVQ 1m5zA 18 :TPVELHKVTLYKDSG T0359 16 :GLGITIAGYI 1m5zA 35 :DFGFSVADGL T0359 31 :EPSGIFVKSITKSSAVEHDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3542 Number of alignments=944 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYI 1m5zA 35 :DFGFSVADGL T0359 31 :EPSGIFVKSITKSSAVEHDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3547 Number of alignments=945 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3552 Number of alignments=946 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3556 Number of alignments=947 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYI 1m5zA 35 :DFGFSVADGL T0359 31 :EPSGIFVKSITKSSAVEHDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3560 Number of alignments=948 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 2 :MSETFDVELTKNVQ 1m5zA 19 :PVELHKVTLYKDSG T0359 16 :GLGITIAGYI 1m5zA 35 :DFGFSVADGL T0359 31 :EPSGIFVKSITKSSAVEHDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3564 Number of alignments=949 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNVQ 1m5zA 21 :ELHKVTLYKDSG T0359 16 :GLGITIAGYIG 1m5zA 35 :DFGFSVADGLL T0359 32 :PSGIFVKSITKSSAVEHDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3569 Number of alignments=950 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMSET 1m5zA 16 :SPTPV T0359 6 :FDVELTKNVQGLGITIAGYIGD 1m5zA 25 :VTLYKDSGMEDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3573 Number of alignments=951 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1m5zA 23 :HKVTLYKDSGMEDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3577 Number of alignments=952 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNV 1m5zA 21 :ELHKVTLYKDS T0359 15 :QGLGITIAGYIGD 1m5zA 34 :EDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3582 Number of alignments=953 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 1 :SMS 1m5zA 16 :SPT T0359 4 :ETFDVELTKNV 1m5zA 21 :ELHKVTLYKDS T0359 15 :QGLGITIAGYIGD 1m5zA 34 :EDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3587 Number of alignments=954 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 6 :FDVELTKNVQGLGITIAGYIGD 1m5zA 25 :VTLYKDSGMEDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3590 Number of alignments=955 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 7 :DVELTKNVQGLGITIAGYIGD 1m5zA 26 :TLYKDSGMEDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3593 Number of alignments=956 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0359)G93 because last residue in template chain is (1m5zA)P106 T0359 2 :MSETFDVELTKNV 1m5zA 19 :PVELHKVTLYKDS T0359 15 :QGLGITIAGYIGD 1m5zA 34 :EDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3597 Number of alignments=957 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0359 2 :MSETFDVELTKNV 1m5zA 19 :PVELHKVTLYKDS T0359 15 :QGLGITIAGYIGD 1m5zA 34 :EDFGFSVADGLLE T0359 33 :SGIFVKSITKSSAVEHDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3601 Number of alignments=958 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1be9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1be9A expands to /projects/compbio/data/pdb/1be9.pdb.gz 1be9A:# T0359 read from 1be9A/merged-a2m # 1be9A read from 1be9A/merged-a2m # adding 1be9A to template set # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3603 Number of alignments=959 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3605 Number of alignments=960 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3607 Number of alignments=961 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3609 Number of alignments=962 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3611 Number of alignments=963 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3613 Number of alignments=964 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3615 Number of alignments=965 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3617 Number of alignments=966 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :T 1be9A 400 :F Number of specific fragments extracted= 3 number of extra gaps= 0 total=3620 Number of alignments=967 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAG 1be9A 310 :EPRRIVIHRGSTGLGFNIIG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3622 Number of alignments=968 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 16 :GLGITIAG 1be9A 322 :GLGFNIIG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1be9A 330 :GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3624 Number of alignments=969 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 10 :LTKNVQGLGITIAGY 1be9A 316 :IHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 2 number of extra gaps= 0 total=3626 Number of alignments=970 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :TSV 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3629 Number of alignments=971 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0359 95 :TSV 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3632 Number of alignments=972 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMS 1be9A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGY 1be9A 310 :EPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 95 :TSV 1be9A 413 :VTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3636 Number of alignments=973 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMS 1be9A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGYI 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 332 :DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 93 :GE 1be9A 402 :AN T0359 95 :TSV 1be9A 413 :VTN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3641 Number of alignments=974 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3643 Number of alignments=975 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 3 :SETFDVELTKNVQGLGITIAGY 1be9A 309 :REPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3645 Number of alignments=976 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 331 :EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3647 Number of alignments=977 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYI 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1be9A 332 :DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3649 Number of alignments=978 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3651 Number of alignments=979 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3653 Number of alignments=980 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMS 1be9A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 93 :GE 1be9A 403 :NS Number of specific fragments extracted= 4 number of extra gaps= 0 total=3657 Number of alignments=981 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 1 :SMS 1be9A 301 :FLG T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY T0359 92 :RGETS 1be9A 401 :EANSR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3661 Number of alignments=982 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3663 Number of alignments=983 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3665 Number of alignments=984 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3667 Number of alignments=985 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3669 Number of alignments=986 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3671 Number of alignments=987 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3673 Number of alignments=988 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0359 93 :GET 1be9A 407 :NSS T0359 96 :SV 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3677 Number of alignments=989 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3679 Number of alignments=990 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3681 Number of alignments=991 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3683 Number of alignments=992 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3685 Number of alignments=993 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3687 Number of alignments=994 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d5gA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d5gA expands to /projects/compbio/data/pdb/1d5g.pdb.gz 1d5gA:# T0359 read from 1d5gA/merged-a2m # 1d5gA read from 1d5gA/merged-a2m # adding 1d5gA to template set # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 3 :SETFDVELTKN 1d5gA 4 :GDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTL 1d5gA 85 :VHLLL Number of specific fragments extracted= 4 number of extra gaps= 3 total=3691 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 4 :ETFDVELTKN 1d5gA 5 :DIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLM 1d5gA 85 :VHLLLE Number of specific fragments extracted= 4 number of extra gaps= 3 total=3695 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 4 number of extra gaps= 3 total=3699 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 4 number of extra gaps= 3 total=3703 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGE 1d5gA 85 :VHLLLEKGQS Number of specific fragments extracted= 4 number of extra gaps= 3 total=3707 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 2 :MSETFDVELTKN 1d5gA 3 :PGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRR 1d5gA 85 :VHLLLEKG Number of specific fragments extracted= 4 number of extra gaps= 3 total=3711 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 4 number of extra gaps= 3 total=3715 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 4 number of extra gaps= 3 total=3719 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 1 :SMSETFDVELTKN 1d5gA 2 :KPGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 4 number of extra gaps= 3 total=3723 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 2 :MSETFDVELTKN 1d5gA 3 :PGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRR 1d5gA 85 :VHLLLEKG Number of specific fragments extracted= 4 number of extra gaps= 3 total=3727 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :S 1d5gA 1 :P T0359 2 :MSETFDVELTKN 1d5gA 3 :PGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3732 Number of alignments=995 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0359)S96 because last residue in template chain is (1d5gA)T96 T0359 1 :SM 1d5gA 1 :PK T0359 3 :SETFDVELTKN 1d5gA 4 :GDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTLMRRGET 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3737 Number of alignments=996 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 2 :MSETFDVELTKN 1d5gA 3 :PGDIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTL 1d5gA 85 :VHLLL Number of specific fragments extracted= 4 number of extra gaps= 3 total=3741 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0359)Q83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0359)T84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0359 4 :ETFDVELTKN 1d5gA 5 :DIFEVELAKN T0359 16 :GLGITIAGYI 1d5gA 17 :SLGISVTGGV T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 1d5gA 29 :SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0359 85 :VLLTL 1d5gA 85 :VHLLL Number of specific fragments extracted= 4 number of extra gaps= 3 total=3745 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1te0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1te0A expands to /projects/compbio/data/pdb/1te0.pdb.gz 1te0A:# T0359 read from 1te0A/merged-a2m # 1te0A read from 1te0A/merged-a2m # adding 1te0A to template set # found chain 1te0A in template set Warning: unaligning (T0359)S3 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)F238 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)F238 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 1 :SM 1te0A 235 :AI T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKLEP 1te0A 239 :QLATKIMDKLIRDGRVIRGYIGIGGREI T0359 33 :SGIFV 1te0A 280 :QGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=3753 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)S219 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)S219 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)F220 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D221 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)K222 Warning: unaligning (T0359)K28 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D225 Warning: unaligning (T0359)K29 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D225 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 4 :ETFDVELT 1te0A 147 :RVPHIGDV T0359 12 :KNVQGLGITI 1te0A 208 :SLGELMGINT T0359 27 :D 1te0A 223 :S T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 9 number of extra gaps= 9 total=3762 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 14 :VQGLG 1te0A 263 :GREIA T0359 21 :IA 1te0A 270 :HA T0359 29 :K 1te0A 278 :Q T0359 32 :PSGIFV 1te0A 279 :LQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 9 number of extra gaps= 7 total=3771 Number of alignments=997 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 14 :VQGLG 1te0A 263 :GREIA T0359 21 :IA 1te0A 270 :HA T0359 29 :K 1te0A 278 :Q T0359 32 :PSGIFV 1te0A 279 :LQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 9 number of extra gaps= 7 total=3780 Number of alignments=998 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 1 :SMSETFDVELTKNVQGLG 1te0A 250 :RDGRVIRGYIGIGGREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 8 total=3788 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 1 :SMSETFDVELTKNVQGLG 1te0A 250 :RDGRVIRGYIGIGGREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 8 total=3796 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 10 :LTKNVQGLG 1te0A 259 :IGIGGREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=3804 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 9 :ELTKNVQGLG 1te0A 258 :YIGIGGREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=3812 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)S1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)Q166 Warning: unaligning (T0359)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)Q166 Warning: unaligning (T0359)S3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T167 Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)I168 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I173 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I173 Warning: unaligning (T0359)N13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)R178 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)R178 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)S219 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)S219 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)F220 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D221 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)K222 Warning: unaligning (T0359)K28 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D225 Warning: unaligning (T0359)K29 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D225 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G226 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)R51 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 5 :TFD 1te0A 169 :TQG T0359 10 :LTK 1te0A 174 :SAT T0359 15 :QG 1te0A 179 :IG T0359 17 :LGITI 1te0A 213 :MGINT T0359 27 :D 1te0A 223 :S T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 11 total=3823 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)N13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)R178 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)R178 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)S219 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)S219 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)F220 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D221 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)K222 Warning: unaligning (T0359)K28 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D225 Warning: unaligning (T0359)K29 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D225 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G226 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)R51 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0359 1 :SMSE 1te0A 46 :SYNL T0359 5 :TFDVEL 1te0A 113 :VFEALL T0359 11 :TK 1te0A 175 :AT T0359 15 :QGLGITI 1te0A 211 :ELMGINT T0359 27 :D 1te0A 223 :S T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 9 total=3834 Number of alignments=999 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)R51 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 14 :VQGLG 1te0A 263 :GREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=3842 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)T20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)R51 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 14 :VQGLG 1te0A 263 :GREIA T0359 21 :IA 1te0A 270 :HA T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GFTNQQAVEVLRHTGQTVLLTLMRRGET 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=3850 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVD 1te0A 304 :IISVD Number of specific fragments extracted= 5 number of extra gaps= 4 total=3855 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)R51 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0359 32 :PSGIFV 1te0A 279 :LQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP Number of specific fragments extracted= 5 number of extra gaps= 4 total=3860 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)E9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0359)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)V85 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)L86 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0359)T95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SMSETFDV 1te0A 50 :AVRRAAPA T0359 11 :TKNVQ 1te0A 60 :NVYNR T0359 18 :GIT 1te0A 67 :NTN T0359 26 :GDKKLEPS 1te0A 75 :EIRTLGSG T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 70 :TNQQAVEVLRHT 1te0A 318 :TMDQVAEIRPGS T0359 82 :GQT 1te0A 339 :DKQ T0359 87 :LTLMRRGE 1te0A 344 :LQVTIQEY Number of specific fragments extracted= 13 number of extra gaps= 10 total=3873 Number of alignments=1000 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)D7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0359)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)T95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 2 :MSETF 1te0A 53 :RAAPA T0359 9 :ELTK 1te0A 60 :NVYN T0359 15 :Q 1te0A 64 :R T0359 18 :GIT 1te0A 67 :NTN T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 70 :TNQQAVEV 1te0A 318 :TMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 12 number of extra gaps= 9 total=3885 Number of alignments=1001 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)Y24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)S33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)T95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SMSETF 1te0A 37 :FDSTDE T0359 13 :NVQGL 1te0A 43 :TPASY T0359 20 :TIAG 1te0A 60 :NVYN T0359 26 :GDK 1te0A 67 :NTN T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 11 number of extra gaps= 9 total=3896 Number of alignments=1002 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)E31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)T95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SMSE 1te0A 37 :FDST T0359 9 :ELT 1te0A 60 :NVY T0359 23 :GY 1te0A 63 :NR T0359 27 :DKK 1te0A 67 :NTN T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 11 number of extra gaps= 9 total=3907 Number of alignments=1003 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 33 :SGIFV 1te0A 280 :QGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 5 total=3913 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 72 :QQAVEVLRHT 1te0A 316 :LETMDQVAEI T0359 82 :GQTVLLTLMRR 1te0A 328 :GSVIPVVVMRD Number of specific fragments extracted= 8 number of extra gaps= 5 total=3921 Number of alignments=1004 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)S33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 22 :AGYIGDK 1te0A 261 :IGGREIA T0359 31 :EP 1te0A 270 :HA T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 9 number of extra gaps= 7 total=3930 Number of alignments=1005 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)E31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 18 :GITIAGYI 1te0A 260 :GIGGREIA T0359 28 :KK 1te0A 270 :HA T0359 33 :SGIFV 1te0A 280 :QGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 9 number of extra gaps= 7 total=3939 Number of alignments=1006 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)E9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0359)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 T0359 1 :SMSETFDV 1te0A 50 :AVRRAAPA T0359 11 :TKNVQ 1te0A 60 :NVYNR T0359 18 :GIT 1te0A 67 :NTN T0359 26 :GDKKLEPS 1te0A 75 :EIRTLGSG T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGET 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 9 total=3950 Number of alignments=1007 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 72 :QQAVEVLRHT 1te0A 316 :LETMDQVAEI T0359 82 :GQTVLLTLMRRGET 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 6 total=3958 Number of alignments=1008 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)F6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0359)E31 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0359)S33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SMSE 1te0A 37 :FDST T0359 7 :DVELT 1te0A 60 :NVYNR T0359 26 :GDK 1te0A 67 :NTN T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGET 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 9 total=3968 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)V8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)V14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SMSE 1te0A 37 :FDST T0359 9 :ELTK 1te0A 60 :NVYN T0359 13 :N 1te0A 69 :N T0359 16 :GLGITI 1te0A 78 :TLGSGV T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGET 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 8 total=3979 Number of alignments=1009 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 6 total=3985 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 72 :QQAVEVLRHT 1te0A 316 :LETMDQVAEI T0359 82 :GQTVLLTLMRRG 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 8 number of extra gaps= 6 total=3993 Number of alignments=1010 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)K12 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1te0A)E227 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G231 Warning: unaligning (T0359)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G231 Warning: unaligning (T0359)L17 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)I232 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)S33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 13 :NV 1te0A 228 :TP T0359 18 :GITI 1te0A 233 :GFAI T0359 22 :AGYIGDK 1te0A 261 :IGGREIA T0359 31 :EP 1te0A 270 :HA T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGET 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 9 total=4004 Number of alignments=1011 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0359)D27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)E31 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 17 :LGITIAGYI 1te0A 259 :IGIGGREIA T0359 28 :KK 1te0A 270 :HA T0359 34 :GIFV 1te0A 281 :GIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 9 number of extra gaps= 7 total=4013 Number of alignments=1012 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)D7 because first residue in template chain is (1te0A)F37 Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 8 :VELTKNVQGLGITIAGYIG 1te0A 38 :DSTDETPASYNLAVRRAAP T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 72 :QQAVEVLRHTGQTVLLTLMRRGETSV 1te0A 316 :LETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 6 total=4021 Number of alignments=1013 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 1 :S 1te0A 37 :F T0359 8 :VELTKNVQGLGITIAGYIG 1te0A 38 :DSTDETPASYNLAVRRAAP T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA T0359 70 :TNQQAVEVLRH 1te0A 318 :TMDQVAEIRPG T0359 84 :TVLLTLMRRGETS 1te0A 329 :SVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 6 total=4031 Number of alignments=1014 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)T11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 1 :SMS 1te0A 37 :FDS T0359 6 :FDVE 1te0A 61 :VYNR T0359 12 :KNV 1te0A 67 :NTN T0359 16 :GLGITIAGY 1te0A 78 :TLGSGVIMD T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGETSV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 9 total=4041 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)E4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0359)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0359)T11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0359)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0359)T95 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0359)S96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0359 1 :SM 1te0A 37 :FD T0359 5 :TFDVE 1te0A 60 :NVYNR T0359 12 :KNV 1te0A 67 :NTN T0359 16 :GLGITIAGY 1te0A 78 :TLGSGVIMD T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 11 number of extra gaps= 11 total=4052 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0359 27 :D 1te0A 278 :Q T0359 32 :PSGIFV 1te0A 279 :LQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP Number of specific fragments extracted= 6 number of extra gaps= 5 total=4058 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)Y24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 68 :GF 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 6 total=4064 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGETS 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDK Number of specific fragments extracted= 6 number of extra gaps= 6 total=4070 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0359)I25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0359)G26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0359)D27 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0359)K28 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0359)L30 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0359)K38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0359)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0359)S43 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0359)S44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0359)E47 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0359)H48 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0359)D49 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0359)G50 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0359)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0359)Q57 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0359)L66 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0359)Q67 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0359 31 :EPSGIFV 1te0A 278 :QLQGIVV T0359 40 :ITK 1te0A 287 :VSP T0359 45 :AV 1te0A 292 :PA T0359 52 :IQIG 1te0A 298 :IQVN T0359 58 :IIAVDGTN 1te0A 304 :IISVDNKP T0359 70 :TNQQAVEVLRHT 1te0A 314 :SALETMDQVAEI T0359 82 :GQTVLLTLMRRGE 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 7 number of extra gaps= 6 total=4077 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h3lA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2h3lA/merged-a2m # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNV 2h3lA 1317 :LAKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAV 2h3lA 1350 :DDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4081 Number of alignments=1015 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNV 2h3lA 1317 :LAKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKK 2h3lA 1331 :ELGFSISGGVGGRG T0359 30 :LEPSGIFVKSITKSSAV 2h3lA 1349 :PDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4085 Number of alignments=1016 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 2 :MSETFDVELTKNV 2h3lA 1318 :AKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAV 2h3lA 1350 :DDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4089 Number of alignments=1017 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 3 :SETFDVELTKNV 2h3lA 1319 :KQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKK 2h3lA 1331 :ELGFSISGGVGGRG T0359 30 :LEPSGIFVKSITKSSAV 2h3lA 1349 :PDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4093 Number of alignments=1018 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNV 2h3lA 1317 :LAKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4097 Number of alignments=1019 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNV 2h3lA 1317 :LAKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDK 2h3lA 1331 :ELGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAVE 2h3lA 1348 :RPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4101 Number of alignments=1020 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 2 :MSETFDVELTKNV 2h3lA 1318 :AKQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4105 Number of alignments=1021 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 3 :SETFDVELTKNV 2h3lA 1319 :KQEIRVRVEKDP T0359 16 :GLGITIAGYIGDK 2h3lA 1331 :ELGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAVE 2h3lA 1348 :RPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4109 Number of alignments=1022 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 2h3lA 1316 :ELAKQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 3 number of extra gaps= 1 total=4112 Number of alignments=1023 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 2h3lA 1316 :ELAKQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 3 number of extra gaps= 1 total=4115 Number of alignments=1024 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2h3lA 1319 :KQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4118 Number of alignments=1025 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 2h3lA 1319 :KQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4121 Number of alignments=1026 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 17 :LGITIAGYIGDK 2h3lA 1332 :LGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAVEH 2h3lA 1348 :RPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4124 Number of alignments=1027 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 16 :GLGITIAGYIGDK 2h3lA 1331 :ELGFSISGGVGGR T0359 29 :KLEPSGIFVKSITKSSAV 2h3lA 1348 :RPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4127 Number of alignments=1028 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNVQ 2h3lA 1315 :HELAKQEIRVRVEKD T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4131 Number of alignments=1029 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 2 :MSETFDVELTKNVQ 2h3lA 1316 :ELAKQEIRVRVEKD T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4135 Number of alignments=1030 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)S96 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMS 2h3lA 1310 :GSH T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4140 Number of alignments=1031 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)S96 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)V97 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMSE 2h3lA 1310 :GSHM T0359 5 :TFDVELTKNV 2h3lA 1321 :EIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4145 Number of alignments=1032 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 11 :TKNVQGLGITIAGYIG 2h3lA 1326 :VEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 3 number of extra gaps= 1 total=4148 Number of alignments=1033 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 6 :FDVELTKNV 2h3lA 1322 :IRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4152 Number of alignments=1034 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4156 Number of alignments=1035 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 5 :TFDVELTKNV 2h3lA 1321 :EIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVEH 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4160 Number of alignments=1036 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNVQG 2h3lA 1315 :HELAKQEIRVRVEKDP T0359 17 :LGITIAGYI 2h3lA 1332 :LGFSISGGV T0359 26 :GDKKLEPSGIFVKSITKSSAVE 2h3lA 1345 :NPFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4164 Number of alignments=1037 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 2 :MSETFDVELTKN 2h3lA 1318 :AKQEIRVRVEKD T0359 15 :QGLGITIAGYIGDKKL 2h3lA 1330 :PELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 2h3lA 1350 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4168 Number of alignments=1038 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMS 2h3lA 1310 :GSH T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 2h3lA 1350 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4173 Number of alignments=1039 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMS 2h3lA 1310 :GSH T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4178 Number of alignments=1040 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 11 :TKNVQGLGITIAGYI 2h3lA 1326 :VEKDPELGFSISGGV T0359 26 :GDKKLEPSGIFVKSITKSSAVE 2h3lA 1345 :NPFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4181 Number of alignments=1041 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 6 :FDVELTKN 2h3lA 1322 :IRVRVEKD T0359 15 :QGLGITIAGYIGDKKL 2h3lA 1330 :PELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 2h3lA 1350 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4185 Number of alignments=1042 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 3 :SETFDVELTKNV 2h3lA 1319 :KQEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVEH 2h3lA 1350 :DDDGIFVTRVQPEGPASK T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1368 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4189 Number of alignments=1043 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIGDKKL 2h3lA 1331 :ELGFSISGGVGGRGN T0359 31 :EPSGIFVKSITKSSAVE 2h3lA 1350 :DDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4193 Number of alignments=1044 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :S 2h3lA 1310 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 2h3lA 1317 :LAKQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4197 Number of alignments=1045 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :S 2h3lA 1310 :G T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 2h3lA 1317 :LAKQEIRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4201 Number of alignments=1046 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMS 2h3lA 1310 :GSH T0359 4 :ETFDVELTKNV 2h3lA 1320 :QEIRVRVEKDP T0359 16 :GLGITIAGYIG 2h3lA 1331 :ELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4206 Number of alignments=1047 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 Warning: unaligning (T0359)T95 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (2h3lA)S1412 T0359 1 :SMS 2h3lA 1310 :GSH T0359 4 :ETFDVELTKNVQ 2h3lA 1320 :QEIRVRVEKDPE T0359 17 :LGITIAGYIG 2h3lA 1332 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 5 number of extra gaps= 1 total=4211 Number of alignments=1048 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 7 :DVELTKNVQGLGITIAGYIG 2h3lA 1322 :IRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4214 Number of alignments=1049 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 7 :DVELTKNVQGLGITIAGYIG 2h3lA 1322 :IRVRVEKDPELGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAVE 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPAS T0359 50 :GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2h3lA 1367 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4217 Number of alignments=1050 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set Warning: unaligning (T0359)E94 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (2h3lA)S1412 T0359 1 :SMSETFDVELTKNVQ 2h3lA 1317 :LAKQEIRVRVEKDPE T0359 17 :LGITIAGYIG 2h3lA 1332 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4221 Number of alignments=1051 # 2h3lA read from 2h3lA/merged-a2m # found chain 2h3lA in template set T0359 2 :MSETFDVELTKNVQ 2h3lA 1318 :AKQEIRVRVEKDPE T0359 17 :LGITIAGYIG 2h3lA 1332 :LGFSISGGVG T0359 27 :DKKLEPSGIFVKSITKSSAV 2h3lA 1346 :PFRPDDDGIFVTRVQPEGPA T0359 49 :DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 2h3lA 1366 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4225 Number of alignments=1052 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2fcfA/merged-a2m # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4228 Number of alignments=1053 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4231 Number of alignments=1054 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4234 Number of alignments=1055 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4237 Number of alignments=1056 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4240 Number of alignments=1057 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4243 Number of alignments=1058 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4246 Number of alignments=1059 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4249 Number of alignments=1060 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)N13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SM 2fcfA 1145 :QS T0359 3 :SETFDVELT 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4252 Number of alignments=1061 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)T20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SM 2fcfA 1145 :QS T0359 3 :SETF 2fcfA 1161 :SLGI T0359 14 :VQGLG 2fcfA 1165 :SIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4256 Number of alignments=1062 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4257 Number of alignments=1063 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 1 number of extra gaps= 0 total=4258 Number of alignments=1064 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLL 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4259 Number of alignments=1065 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM Number of specific fragments extracted= 2 number of extra gaps= 1 total=4261 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4264 Number of alignments=1066 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4267 Number of alignments=1067 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4270 Number of alignments=1068 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4273 Number of alignments=1069 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS Number of specific fragments extracted= 3 number of extra gaps= 1 total=4276 Number of alignments=1070 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII Number of specific fragments extracted= 3 number of extra gaps= 1 total=4279 Number of alignments=1071 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4282 Number of alignments=1072 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4285 Number of alignments=1073 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4288 Number of alignments=1074 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4291 Number of alignments=1075 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4294 Number of alignments=1076 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4297 Number of alignments=1077 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4300 Number of alignments=1078 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 4 :ETFDVELTKN 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII Number of specific fragments extracted= 3 number of extra gaps= 1 total=4303 Number of alignments=1079 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4306 Number of alignments=1080 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)V14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTKN 2fcfA 1145 :QSMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4309 Number of alignments=1081 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELTK 2fcfA 1146 :SMQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4312 Number of alignments=1082 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SM 2fcfA 1145 :QS T0359 3 :SETFDVELTK 2fcfA 1148 :QPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4316 Number of alignments=1083 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELT 2fcfA 1145 :QSMQPRRVELW T0359 12 :K 2fcfA 1157 :E T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4320 Number of alignments=1084 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 1 :SMSETFDVELT 2fcfA 1145 :QSMQPRRVELW T0359 12 :K 2fcfA 1157 :E T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4324 Number of alignments=1085 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 2 :MSETFDVELTK 2fcfA 1147 :MQPRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=4327 Number of alignments=1086 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 4 :ETFDVELTK 2fcfA 1149 :PRRVELWRE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=4330 Number of alignments=1087 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 2 :MSETFDVEL 2fcfA 1146 :SMQPRRVEL T0359 11 :TK 2fcfA 1156 :RE T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4334 Number of alignments=1088 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0359)N13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0359)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0359)I25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0359)G26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0359 2 :MSETFDVELT 2fcfA 1146 :SMQPRRVELW T0359 12 :K 2fcfA 1157 :E T0359 16 :GLGITIAGY 2fcfA 1161 :SLGISIVGG T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=4338 Number of alignments=1089 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rgrA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rgrA expands to /projects/compbio/data/pdb/1rgr.pdb.gz 1rgrA:# T0359 read from 1rgrA/merged-a2m # 1rgrA read from 1rgrA/merged-a2m # adding 1rgrA to template set # found chain 1rgrA in template set Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 7 :DVELTKNVQGLGIT 1rgrA 65 :EITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRR 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 6 number of extra gaps= 4 total=4344 Number of alignments=1090 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 7 :DVELTKNVQGLGIT 1rgrA 65 :EITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRG 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 6 number of extra gaps= 4 total=4350 Number of alignments=1091 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4356 Number of alignments=1092 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4362 Number of alignments=1093 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4368 Number of alignments=1094 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4374 Number of alignments=1095 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0359)T95 because last residue in template chain is (1rgrA)P154 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4380 Number of alignments=1096 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0359)T95 because last residue in template chain is (1rgrA)P154 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4386 Number of alignments=1097 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0359)T95 because last residue in template chain is (1rgrA)P154 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4392 Number of alignments=1098 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :L 1rgrA 88 :I T0359 31 :EPSGIFVKSITKSSAVEHDGR 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=4398 Number of alignments=1099 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0359)T95 because last residue in template chain is (1rgrA)P154 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :LEPSGIFVKSITKSSAVEHDGR 1rgrA 89 :GDDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 4 total=4403 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0359)T95 because last residue in template chain is (1rgrA)P154 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :LEPSGIFVKSITKSSAVEHDGR 1rgrA 89 :GDDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 4 total=4408 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 5 :TFDVELTKNVQGLGIT 1rgrA 63 :YEEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :LEPSGIFVKSITKSSAVEHDGR 1rgrA 89 :GDDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 4 total=4413 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0359)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0359)A22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0359)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0359)K28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0359)K29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0359)I52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0359)Q53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0359)F69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0359 6 :FDVELTKNVQGLGIT 1rgrA 64 :EEITLERGNSGLGFS T0359 24 :YIGD 1rgrA 82 :GTDN T0359 30 :LEPSGIFVKSITKSSAVEHDGR 1rgrA 89 :GDDPSIFITKIIPGGAAAQDGR T0359 54 :IGDQIIAVDGTNLQG 1rgrA 113 :VNDSILFVNEVDVRE T0359 71 :NQQAVEVLRHTGQTVLLTLMRRGE 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 4 total=4418 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lcyA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lcyA expands to /projects/compbio/data/pdb/1lcy.pdb.gz 1lcyA:# T0359 read from 1lcyA/merged-a2m # 1lcyA read from 1lcyA/merged-a2m # adding 1lcyA to template set # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNV 1lcyA 134 :QNTITSGIVSSAQR T0359 15 :QGLGITIAG 1lcyA 183 :EVIGVNTMK T0359 25 :IGD 1lcyA 192 :VTA T0359 31 :EP 1lcyA 195 :GI T0359 33 :SGIFVKSITKSSAVEHDG 1lcyA 256 :HGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVE 1lcyA 274 :LRPGDVILAIGEQMVQNAEDVYEAV T0359 80 :HTGQTVLLTLMRRGETSV 1lcyA 299 :RTQSQLAVQIRRGRETLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=4425 Number of alignments=1100 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0359)T20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1lcyA)N158 Warning: unaligning (T0359)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1lcyA)N158 T0359 3 :SETFD 1lcyA 115 :SADVR T0359 8 :VELTKNVQGLGI 1lcyA 136 :TITSGIVSSAQR T0359 22 :AGYI 1lcyA 159 :VEYI T0359 26 :GD 1lcyA 193 :TA T0359 31 :EPSGIFVKSITKSSAVEHDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVE 1lcyA 274 :LRPGDVILAIGEQMVQNAEDVYEAV T0359 80 :HTGQTVLLTLMRRGETSV 1lcyA 299 :RTQSQLAVQIRRGRETLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=4432 Number of alignments=1101 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 32 :PSGIFVKSITKSSAVEHDG 1lcyA 255 :QHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVE 1lcyA 274 :LRPGDVILAIGEQMVQNAEDVYEAV T0359 80 :HTGQTVLLTLMRRGET 1lcyA 299 :RTQSQLAVQIRRGRET Number of specific fragments extracted= 3 number of extra gaps= 0 total=4435 Number of alignments=1102 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVE 1lcyA 274 :LRPGDVILAIGEQMVQNAEDVYEAV T0359 80 :HTGQTVLLTLMRRGET 1lcyA 299 :RTQSQLAVQIRRGRET Number of specific fragments extracted= 3 number of extra gaps= 0 total=4438 Number of alignments=1103 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNV 1lcyA 195 :GISFAIPSDRLREF T0359 15 :QGLGITIAGYIGD 1lcyA 242 :AELQLREPSFPDV T0359 32 :PSGIFVKSITKSSAVEHDG 1lcyA 255 :QHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVL 1lcyA 291 :AEDVYEAV T0359 80 :HTGQTVLLTLMRRGETSV 1lcyA 299 :RTQSQLAVQIRRGRETLT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4444 Number of alignments=1104 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 6 :F 1lcyA 11 :R T0359 7 :DVE 1lcyA 201 :PSD T0359 10 :LTKNV 1lcyA 229 :IGVMM T0359 15 :QGLGITIAGYIGD 1lcyA 242 :AELQLREPSFPDV T0359 32 :PSGIFVKSITKSSAVEHDG 1lcyA 255 :QHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVL 1lcyA 291 :AEDVYEAV T0359 80 :HTGQTVLLTLMRRGETSV 1lcyA 299 :RTQSQLAVQIRRGRETLT Number of specific fragments extracted= 8 number of extra gaps= 0 total=4452 Number of alignments=1105 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 15 :QGLGITIAGYIGD 1lcyA 242 :AELQLREPSFPDV T0359 32 :PSGIFVKSITKSSAVEHDG 1lcyA 255 :QHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVL 1lcyA 291 :AEDVYEAV T0359 80 :HTGQTVLLTLMRRGET 1lcyA 299 :RTQSQLAVQIRRGRET Number of specific fragments extracted= 5 number of extra gaps= 0 total=4457 Number of alignments=1106 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 14 :VQGLGITIAGYIGD 1lcyA 241 :LAELQLREPSFPDV T0359 32 :PSGIFVKSITKSSAVEHDG 1lcyA 255 :QHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVL 1lcyA 291 :AEDVYEAV T0359 80 :HTGQTVLLTLMRRGET 1lcyA 299 :RTQSQLAVQIRRGRET Number of specific fragments extracted= 5 number of extra gaps= 0 total=4462 Number of alignments=1107 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1lcyA 34 :LDRHPFLGREVPISNGSGFVVAAD T0359 25 :IGDKKLEPSGIFVKSITKSSAVEHDG 1lcyA 248 :EPSFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLR 1lcyA 291 :AEDVYEAVR T0359 81 :TGQTVLLTLMRRGETSV 1lcyA 300 :TQSQLAVQIRRGRETLT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4467 Number of alignments=1108 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1lcyA 34 :LDRHPFLGREVPISNGSGFVVAAD T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLR 1lcyA 291 :AEDVYEAVR T0359 81 :TGQTVLLTLMRRGETSV 1lcyA 300 :TQSQLAVQIRRGRETLT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4472 Number of alignments=1109 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 14 :VQGLGITIAG 1lcyA 241 :LAELQLREPS T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLR 1lcyA 291 :AEDVYEAVR T0359 81 :TGQTVLLTLMRRGET 1lcyA 300 :TQSQLAVQIRRGRET Number of specific fragments extracted= 5 number of extra gaps= 0 total=4477 Number of alignments=1110 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 16 :GLGITIAG 1lcyA 243 :ELQLREPS T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLR 1lcyA 291 :AEDVYEAVR T0359 81 :TGQTVLLTLMRRGET 1lcyA 300 :TQSQLAVQIRRGRET Number of specific fragments extracted= 5 number of extra gaps= 0 total=4482 Number of alignments=1111 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 48 :HDGRIQIGDQIIAVDGTNLQ 1lcyA 270 :HRAGLRPGDVILAIGEQMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4483 Number of alignments=1112 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 47 :EHDGRIQIGDQIIAVDGTNLQG 1lcyA 269 :AHRAGLRPGDVILAIGEQMVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=4484 Number of alignments=1113 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNV 1lcyA 24 :TAPAVVYIEILDRH T0359 15 :QGLGITIAGYIGDKKLEPS 1lcyA 48 :NGSGFVVAADGLIVTNAHV T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4489 Number of alignments=1114 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSETFDVELTKNV 1lcyA 24 :TAPAVVYIEILDRH T0359 15 :QGLGITIAGYI 1lcyA 48 :NGSGFVVAADG T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4494 Number of alignments=1115 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSE 1lcyA 6 :PPAS T0359 19 :ITIAGYIGDKKLEPS 1lcyA 31 :IEILDRHPFLGREVP T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRGE 1lcyA 302 :SQLAVQIRRGRE T0359 95 :TSV 1lcyA 323 :VTE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4501 Number of alignments=1116 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSE 1lcyA 6 :PPAS T0359 5 :TFDVELTKNVQ 1lcyA 28 :VVYIEILDRHP T0359 17 :LGITIAGYI 1lcyA 48 :NGSGFVVAA T0359 32 :PS 1lcyA 57 :DG T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTG 1lcyA 291 :AEDVYEAVRTQS T0359 84 :TVLLTLMRRGE 1lcyA 303 :QLAVQIRRGRE T0359 95 :TSV 1lcyA 323 :VTE Number of specific fragments extracted= 9 number of extra gaps= 0 total=4510 Number of alignments=1117 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4512 Number of alignments=1118 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLT 1lcyA 300 :TQSQLAVQIRRGRETLTLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4515 Number of alignments=1119 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRGE 1lcyA 302 :SQLAVQIRRGRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4519 Number of alignments=1120 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 26 :GDKKLEP 1lcyA 247 :REPSFPD T0359 33 :SGIFVKSITKSSAVEHDG 1lcyA 256 :HGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTG 1lcyA 291 :AEDVYEAVRTQS T0359 84 :TVLLTLMRRGE 1lcyA 303 :QLAVQIRRGRE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4524 Number of alignments=1121 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1lcyA)E325 T0359 1 :SMSETFDVELTKNVQGLG 1lcyA 24 :TAPAVVYIEILDRHPFLG T0359 19 :ITIAGYIGDKKLEPS 1lcyA 44 :VPISNGSGFVVAADG T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4529 Number of alignments=1122 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1lcyA)E325 T0359 1 :SMSETFDVELTKN 1lcyA 24 :TAPAVVYIEILDR T0359 14 :VQGLGITI 1lcyA 47 :SNGSGFVV T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4534 Number of alignments=1123 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSE 1lcyA 6 :PPAS T0359 6 :FDVELTKNVQ 1lcyA 29 :VYIEILDRHP T0359 16 :GLGITI 1lcyA 49 :GSGFVV T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRGETS 1lcyA 302 :SQLAVQIRRGRETL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4541 Number of alignments=1124 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 1 :SMSE 1lcyA 6 :PPAS T0359 5 :TFDVELTKNVQ 1lcyA 28 :VVYIEILDRHP T0359 17 :LGITI 1lcyA 50 :SGFVV T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTGQ 1lcyA 291 :AEDVYEAVRTQSQ T0359 85 :VLLTLMRRGETS 1lcyA 304 :LAVQIRRGRETL Number of specific fragments extracted= 7 number of extra gaps= 0 total=4548 Number of alignments=1125 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 34 :GIFVKSITKSSAVEHDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4550 Number of alignments=1126 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 30 :LEPSGIFVKSITKSSAVEHDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 72 :QQAVEVLRH 1lcyA 292 :EDVYEAVRT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4553 Number of alignments=1127 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 27 :DKKL 1lcyA 248 :EPSF T0359 31 :EPSGIFVKSITKSSAVEHDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRGET 1lcyA 302 :SQLAVQIRRGRET Number of specific fragments extracted= 5 number of extra gaps= 0 total=4558 Number of alignments=1128 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 16 :GLGITIAG 1lcyA 228 :YIGVMMLT T0359 24 :YIGDKKL 1lcyA 245 :QLREPSF T0359 31 :EPSGIFVKSITKSSAVEHDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTGQ 1lcyA 291 :AEDVYEAVRTQSQ T0359 85 :VLLTLMRRGET 1lcyA 304 :LAVQIRRGRET Number of specific fragments extracted= 6 number of extra gaps= 0 total=4564 Number of alignments=1129 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1lcyA)E325 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1lcyA 26 :PAVVYIEILDRHPFLGREVPISNG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4568 Number of alignments=1130 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0359)T95 because last residue in template chain is (1lcyA)E325 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1lcyA 26 :PAVVYIEILDRHPFLGREVPISNG T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 70 :TNQQAVEVLRHTGQTVLLTLMRRGE 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4572 Number of alignments=1131 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 6 :FDVELTKNVQG 1lcyA 31 :IEILDRHPFLG T0359 17 :LGITIAGYIG 1lcyA 48 :NGSGFVVAAD T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRGET 1lcyA 302 :SQLAVQIRRGRET T0359 96 :SV 1lcyA 324 :TE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4579 Number of alignments=1132 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 5 :TFDVELTKNVQG 1lcyA 30 :YIEILDRHPFLG T0359 18 :GITIAGYIG 1lcyA 49 :GSGFVVAAD T0359 28 :KK 1lcyA 248 :EP T0359 30 :LEPSGIFVKSITKSSAVEHDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTG 1lcyA 291 :AEDVYEAVRTQS T0359 84 :TVLLTLMRRGE 1lcyA 303 :QLAVQIRRGRE T0359 96 :SV 1lcyA 324 :TE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4587 Number of alignments=1133 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 28 :KKLEPSGIFVKSITKSSAVEHDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4589 Number of alignments=1134 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQGF 1lcyA 274 :LRPGDVILAIGEQMVQNA T0359 72 :QQAVEVL 1lcyA 292 :EDVYEAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4592 Number of alignments=1135 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHT 1lcyA 291 :AEDVYEAVRTQ T0359 83 :QTVLLTLMRRG 1lcyA 302 :SQLAVQIRRGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4596 Number of alignments=1136 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0359 27 :DK 1lcyA 250 :SF T0359 30 :LEPSGIFVKSITKSSAVEHDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0359 52 :IQIGDQIIAVDGTNLQG 1lcyA 274 :LRPGDVILAIGEQMVQN T0359 71 :NQQAVEVLRHTG 1lcyA 291 :AEDVYEAVRTQS T0359 84 :TVLLTLMRRGE 1lcyA 303 :QLAVQIRRGRE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4601 Number of alignments=1137 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sotA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sotA expands to /projects/compbio/data/pdb/1sot.pdb.gz 1sotA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 1sotA/merged-a2m # 1sotA read from 1sotA/merged-a2m # adding 1sotA to template set # found chain 1sotA in template set Warning: unaligning (T0359)S33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKNVQGLGITI 1sotA 165 :GQTITQGIISATGRIGLNPTG T0359 22 :AGYI 1sotA 187 :QNFL T0359 26 :GDKKLEP 1sotA 257 :GYIGIGG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4606 Number of alignments=1138 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)M2 because first residue in template chain is (1sotA)M42 Warning: unaligning (T0359)S33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 3 :SETFDVELTKNVQGLGITI 1sotA 146 :RRVPHIGDVVLAIGNPYNL T0359 22 :AGYIG 1sotA 187 :QNFLQ T0359 27 :D 1sotA 193 :D T0359 28 :KKLEP 1sotA 259 :IGIGG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4612 Number of alignments=1139 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 17 :LGITI 1sotA 259 :IGIGG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4615 Number of alignments=1140 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4617 Number of alignments=1141 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKK 1sotA 235 :AIPFQLATKIMDKLIRDGRVIRGYIGIGG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0359 96 :SV 1sotA 342 :LT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4621 Number of alignments=1142 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSE 1sotA 46 :SYNL T0359 5 :TFDVELTK 1sotA 69 :NSHNQLEI T0359 13 :NVQGLGITIAGYIGDKK 1sotA 247 :KLIRDGRVIRGYIGIGG T0359 35 :IFVKSITKSSAVEHD 1sotA 282 :IVVNEVSPDGPAANA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 297 :GIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0359 96 :SV 1sotA 342 :LT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4627 Number of alignments=1143 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)A22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 17 :LGITI 1sotA 259 :IGIGG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4630 Number of alignments=1144 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 15 :QGLGITIAGYIGDKK 1sotA 249 :IRDGRVIRGYIGIGG T0359 35 :IFVKSITKSSAVEHD 1sotA 282 :IVVNEVSPDGPAANA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1sotA 297 :GIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4633 Number of alignments=1145 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVD 1sotA 298 :IQVNDLIISVD Number of specific fragments extracted= 2 number of extra gaps= 0 total=4635 Number of alignments=1146 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVE 1sotA 282 :IVVNEVSPDGPAA T0359 49 :DGRIQIGDQIIAVDGTN 1sotA 295 :NAGIQVNDLIISVDNKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4637 Number of alignments=1147 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)T84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKLEPS 1sotA 50 :AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 70 :TNQQAVEVLRHT 1sotA 318 :TMDQVAEIRPGS T0359 85 :VLLTLMRRGE 1sotA 342 :LTLQVTIQEY Number of specific fragments extracted= 5 number of extra gaps= 0 total=4642 Number of alignments=1148 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKN 1sotA 52 :RRAAPAVVNVYNR T0359 16 :GLGITIAGYIGDKKLEP 1sotA 65 :GLNTNSHNQLEIRTLGS T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 70 :TNQQAVEV 1sotA 318 :TMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4648 Number of alignments=1149 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 1 :SMSETF 1sotA 42 :MTPASY T0359 19 :ITIAGYIGDKKLEPS 1sotA 60 :NVYNRGLNTNSHNQL T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHT 1sotA 315 :ALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4654 Number of alignments=1150 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)E94 because last residue in template chain is (1sotA)A353 T0359 1 :SMSETF 1sotA 42 :MTPASY T0359 7 :DVELTK 1sotA 58 :VVNVYN T0359 13 :NVQ 1sotA 69 :NSH T0359 17 :LGITIAG 1sotA 79 :LGSGVIM T0359 29 :KLEP 1sotA 86 :DQRG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHT 1sotA 315 :ALETMDQVAEI T0359 82 :GQTV 1sotA 328 :GSVI T0359 86 :LLTLMRRG 1sotA 345 :QVTIQEYP Number of specific fragments extracted= 10 number of extra gaps= 0 total=4664 Number of alignments=1151 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4666 Number of alignments=1152 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 72 :QQAVEVLRHT 1sotA 316 :LETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4670 Number of alignments=1153 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHT 1sotA 315 :ALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 95 :T 1sotA 342 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=4675 Number of alignments=1154 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHT 1sotA 315 :ALETMDQVAEI T0359 82 :GQTVLL 1sotA 328 :GSVIPV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4679 Number of alignments=1155 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGDKKLEPS 1sotA 50 :AVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHT 1sotA 314 :SALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 6 number of extra gaps= 0 total=4685 Number of alignments=1156 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 18 :G 1sotA 82 :G T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 72 :QQAVEVLRHT 1sotA 316 :LETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 6 number of extra gaps= 0 total=4691 Number of alignments=1157 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETF 1sotA 42 :MTPASY T0359 19 :ITIAG 1sotA 59 :VNVYN T0359 24 :YIGDKKLEPS 1sotA 65 :GLNTNSHNQL T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHT 1sotA 314 :SALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 8 number of extra gaps= 0 total=4699 Number of alignments=1158 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETF 1sotA 42 :MTPASY T0359 7 :DVELTK 1sotA 58 :VVNVYN T0359 13 :NVQ 1sotA 69 :NSH T0359 16 :GLGITI 1sotA 78 :TLGSGV T0359 24 :YIGDKK 1sotA 131 :KINATG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHT 1sotA 314 :SALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 10 number of extra gaps= 0 total=4709 Number of alignments=1159 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4711 Number of alignments=1160 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 72 :QQAVEVLRHT 1sotA 316 :LETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4715 Number of alignments=1161 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHT 1sotA 314 :SALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=4720 Number of alignments=1162 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)L89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)T95 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHT 1sotA 314 :SALETMDQVAEI T0359 82 :GQTVLLT 1sotA 328 :GSVIPVV T0359 96 :S 1sotA 342 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=4725 Number of alignments=1163 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)R91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)V97 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1sotA 42 :MTPASYNLAVRRAAPAVVNVYNRGLN T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 72 :QQAVEVLRHTGQTVLLTLM 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4729 Number of alignments=1164 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)M90 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)S96 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETFDVELTK 1sotA 42 :MTPASYNLAVRR T0359 13 :NVQGLGITIAGYI 1sotA 70 :SHNQLEIRTLGSG T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA T0359 70 :TNQQAVEV 1sotA 318 :TMDQVAEI T0359 81 :TGQTVLLTL 1sotA 326 :RPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4735 Number of alignments=1165 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)R91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)V97 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 1 :SMSETF 1sotA 42 :MTPASY T0359 7 :DVELTKNVQ 1sotA 62 :YNRGLNTNS T0359 16 :GLGITIAGYIG 1sotA 78 :TLGSGVIMDQR T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHTGQTVLLTLM 1sotA 315 :ALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4741 Number of alignments=1166 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)E94 because last residue in template chain is (1sotA)A353 T0359 1 :SMSE 1sotA 42 :MTPA T0359 5 :TFDVELTKNVQG 1sotA 58 :VVNVYNRGLNTN T0359 17 :LGITIAGYIG 1sotA 79 :LGSGVIMDQR T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHTGQ 1sotA 314 :SALETMDQVAEIRP T0359 84 :TVLLTLMRRG 1sotA 343 :TLQVTIQEYP Number of specific fragments extracted= 7 number of extra gaps= 0 total=4748 Number of alignments=1167 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTN 1sotA 298 :IQVNDLIISVDNKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4750 Number of alignments=1168 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQGF 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4752 Number of alignments=1169 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)R91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0359)V97 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQG 1sotA 298 :IQVNDLIISVDNKPAIS T0359 71 :NQQAVEVLRHTGQTVLLTLM 1sotA 315 :ALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4755 Number of alignments=1170 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0359)G34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0359)R91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0359 35 :IFVKSITKSSAVEHDG 1sotA 282 :IVVNEVSPDGPAANAG T0359 52 :IQIGDQIIAVDGTNLQ 1sotA 298 :IQVNDLIISVDNKPAI T0359 70 :TNQQAVEVLRHTGQTVLLTLM 1sotA 314 :SALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4758 Number of alignments=1171 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 2f5yA/merged-a2m # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGYI 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0359 34 :GIFVKSITKSSAVEHDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4762 Number of alignments=1172 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGYI 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0359 34 :GIFVKSITKSSAVEHDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4766 Number of alignments=1173 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGYI 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0359 34 :GIFVKSITKSSAVEHDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4770 Number of alignments=1174 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAGYI 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0359 34 :GIFVKSITKSSAVEHDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4774 Number of alignments=1175 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGY 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0359 33 :SGIFVKSITKSSAVEHDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4778 Number of alignments=1176 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGY 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0359 33 :SGIFVKSITKSSAVEHDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4782 Number of alignments=1177 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAGY 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0359 33 :SGIFVKSITKSSAVEHDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4786 Number of alignments=1178 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAGY 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0359 33 :SGIFVKSITKSSAVEHDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4790 Number of alignments=1179 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4794 Number of alignments=1180 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S1 because of BadResidue code BAD_PEPTIDE in next template residue (2f5yA)R15 Warning: unaligning (T0359)M2 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 8 :VELTKNVQGLGITIAGYIG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4798 Number of alignments=1181 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 23 :GYIGDKKLEPSGIFVKSITKSSAVEHDG 2f5yA 26 :DGFGFTICCDSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4801 Number of alignments=1182 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 24 :YIGDKKLEPSGIFVKSITKSSAVEHDG 2f5yA 27 :GFGFTICCDSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4804 Number of alignments=1183 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set T0359 8 :VELTKNVQGLGITIA 2f5yA 19 :ITIPRGKDGFGFTIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=4805 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set T0359 10 :LTKNVQGLGITIAG 2f5yA 21 :IPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDGRIQI 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQL T0359 56 :DQIIA 2f5yA 58 :DTVLQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=4808 Number of alignments=1184 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4812 Number of alignments=1185 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4816 Number of alignments=1186 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4820 Number of alignments=1187 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4824 Number of alignments=1188 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4828 Number of alignments=1189 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4832 Number of alignments=1190 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4836 Number of alignments=1191 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4840 Number of alignments=1192 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4844 Number of alignments=1193 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4848 Number of alignments=1194 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4852 Number of alignments=1195 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIA 2f5yA 16 :YRQITIPRGKDGFGFTIC T0359 31 :EPSGIFVKSITKSSAVEHDG 2f5yA 34 :CDSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4856 Number of alignments=1196 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 2 total=4860 Number of alignments=1197 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4864 Number of alignments=1198 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4868 Number of alignments=1199 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIA 2f5yA 16 :YRQITIPRGKDGFGFTIC T0359 31 :EPSGIFVKSITKSSAVEHDG 2f5yA 34 :CDSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4872 Number of alignments=1200 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4876 Number of alignments=1201 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4880 Number of alignments=1202 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4884 Number of alignments=1203 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4888 Number of alignments=1204 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 4 number of extra gaps= 2 total=4892 Number of alignments=1205 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4896 Number of alignments=1206 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4900 Number of alignments=1207 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0359)E4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0359)Q67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0359)G68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0359)G93 because last residue in template chain is (2f5yA)V95 T0359 5 :TFDVELTKNVQGLGITIAG 2f5yA 16 :YRQITIPRGKDGFGFTICC T0359 32 :PSGIFVKSITKSSAVEHDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0359 52 :IQIGDQIIAVDGTNL 2f5yA 54 :LQQLDTVLQLNERPV T0359 69 :FTNQQAVEVLRHTGQTVLLTLMRR 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4904 Number of alignments=1208 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaA expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaA:# T0359 read from 1kwaA/merged-a2m # 1kwaA read from 1kwaA/merged-a2m # adding 1kwaA to template set # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTK 1kwaA 488 :SRLVQFQK T0359 13 :NVQGLGITIAG 1kwaA 497 :TDEPMGITLKM T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4907 Number of alignments=1209 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 7 :DVELTK 1kwaA 490 :LVQFQK T0359 13 :NVQGLGITIAG 1kwaA 497 :TDEPMGITLKM T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4910 Number of alignments=1210 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4913 Number of alignments=1211 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4916 Number of alignments=1212 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4919 Number of alignments=1213 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4922 Number of alignments=1214 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKN 1kwaA 488 :SRLVQFQKN T0359 14 :VQGLGITIAGY 1kwaA 498 :DEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4925 Number of alignments=1215 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKN 1kwaA 488 :SRLVQFQKN T0359 14 :VQGLGITIAGY 1kwaA 498 :DEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4928 Number of alignments=1216 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKN 1kwaA 489 :RLVQFQKN T0359 14 :VQGLGITIAGY 1kwaA 498 :DEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4931 Number of alignments=1217 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKN 1kwaA 489 :RLVQFQKN T0359 14 :VQGLGITIAGY 1kwaA 498 :DEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4934 Number of alignments=1218 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 1 :SM 1kwaA 487 :RS T0359 5 :TFDVELTKNVQGLGITIAGY 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4937 Number of alignments=1219 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 1 :SM 1kwaA 487 :RS T0359 5 :TFDVELTKNVQGLGITIAGY 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR T0359 96 :SV 1kwaA 573 :EF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4941 Number of alignments=1220 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 5 :TFDVELTKNVQGLGITIAGY 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4943 Number of alignments=1221 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKNVQGLGITIAGY 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4945 Number of alignments=1222 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=4946 Number of alignments=1223 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=4947 Number of alignments=1224 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4950 Number of alignments=1225 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4953 Number of alignments=1226 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAG 1kwaA 500 :PMGITLKM T0359 26 :G 1kwaA 508 :N T0359 29 :KLE 1kwaA 509 :ELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR T0359 96 :SV 1kwaA 573 :EF Number of specific fragments extracted= 6 number of extra gaps= 0 total=4959 Number of alignments=1227 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAG 1kwaA 500 :PMGITLKM T0359 26 :G 1kwaA 508 :N T0359 29 :KLEP 1kwaA 509 :ELNH T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 513 :CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR T0359 96 :SV 1kwaA 573 :EF Number of specific fragments extracted= 6 number of extra gaps= 0 total=4965 Number of alignments=1228 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKNVQ 1kwaA 489 :RLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4968 Number of alignments=1229 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKNVQ 1kwaA 489 :RLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4971 Number of alignments=1230 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAG 1kwaA 500 :PMGITLKM T0359 26 :G 1kwaA 508 :N T0359 29 :KLE 1kwaA 509 :ELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4976 Number of alignments=1231 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAG 1kwaA 500 :PMGITLKM T0359 26 :G 1kwaA 508 :N T0359 29 :KLEP 1kwaA 509 :ELNH T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 513 :CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4981 Number of alignments=1232 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNV 1kwaA 488 :SRLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4984 Number of alignments=1233 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNV 1kwaA 488 :SRLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4987 Number of alignments=1234 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNV 1kwaA 488 :SRLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4990 Number of alignments=1235 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 27 :D 1kwaA 509 :E T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 510 :LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4994 Number of alignments=1236 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 6 :FDVELTKNV 1kwaA 489 :RLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4997 Number of alignments=1237 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKNV 1kwaA 489 :RLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 3 number of extra gaps= 0 total=5000 Number of alignments=1238 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNV 1kwaA 488 :SRLVQFQKNT T0359 15 :QGLGITIAGY 1kwaA 499 :EPMGITLKMN T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5003 Number of alignments=1239 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQ 1kwaA 488 :SRLVQFQKNTD T0359 16 :GLGITIAGY 1kwaA 500 :PMGITLKMN T0359 27 :D 1kwaA 509 :E T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 510 :LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=5007 Number of alignments=1240 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5009 Number of alignments=1241 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5011 Number of alignments=1242 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVE 1kwaA 488 :SRLVQ T0359 10 :LTKNVQGLGITIAGYIGD 1kwaA 494 :QKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5014 Number of alignments=1243 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELT 1kwaA 488 :SRLVQFQ T0359 12 :KNVQGLGITIAGYIGD 1kwaA 496 :NTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5017 Number of alignments=1244 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1kwaA 489 :RLVQFQKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 2 number of extra gaps= 0 total=5019 Number of alignments=1245 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0359 6 :FDVELTKNVQGLGITIAGYIGD 1kwaA 490 :LVQFQKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 2 number of extra gaps= 0 total=5021 Number of alignments=1246 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1kwaA 489 :RLVQFQKNTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5023 Number of alignments=1247 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaA)F574 T0359 5 :TFDVELT 1kwaA 488 :SRLVQFQ T0359 12 :KNVQGLGITIAGYIGD 1kwaA 496 :NTDEPMGITLKMNELN T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5026 Number of alignments=1248 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaB expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaB:# T0359 read from 1kwaB/merged-a2m # 1kwaB read from 1kwaB/merged-a2m # adding 1kwaB to template set # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 5 :TFDVELTK 1kwaB 488 :SRLVQFQK T0359 13 :NVQGLGITIA 1kwaB 497 :TDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5029 Number of alignments=1249 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 7 :DVELTK 1kwaB 490 :LVQFQK T0359 13 :NVQGLGITIA 1kwaB 497 :TDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 1 total=5032 Number of alignments=1250 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 4 :ETFDVELTKNVQGLGITIA 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5034 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 1 :SM 1kwaB 487 :RS T0359 5 :TFDVELTKNVQGLGITIA 1kwaB 489 :RLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR T0359 96 :SV 1kwaB 573 :EF Number of specific fragments extracted= 4 number of extra gaps= 1 total=5038 Number of alignments=1251 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 5 :TFDVELTKNVQGLGITIA 1kwaB 489 :RLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=5040 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 6 :FDVELTKNVQGLGITIA 1kwaB 490 :LVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=5042 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0359 36 :FVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 1kwaB 514 :IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=5043 Number of alignments=1252 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0359 35 :IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1kwaB 513 :CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5044 Number of alignments=1253 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5047 Number of alignments=1254 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5050 Number of alignments=1255 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 32 :P 1kwaB 511 :N T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5054 Number of alignments=1256 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5057 Number of alignments=1257 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 6 :FDVELTKNVQ 1kwaB 489 :RLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5060 Number of alignments=1258 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 6 :FDVELTKNVQ 1kwaB 489 :RLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5063 Number of alignments=1259 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 32 :P 1kwaB 511 :N T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 4 number of extra gaps= 1 total=5067 Number of alignments=1260 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 3 number of extra gaps= 1 total=5070 Number of alignments=1261 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNV 1kwaB 488 :SRLVQFQKNT T0359 15 :QGLGITIA 1kwaB 499 :EPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5073 Number of alignments=1262 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNV 1kwaB 488 :SRLVQFQKNT T0359 15 :QGLGITIA 1kwaB 499 :EPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5076 Number of alignments=1263 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5079 Number of alignments=1264 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5082 Number of alignments=1265 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 6 :FDVELTKNV 1kwaB 489 :RLVQFQKNT T0359 15 :QGLGITIA 1kwaB 499 :EPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5085 Number of alignments=1266 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 6 :FDVELTKNV 1kwaB 489 :RLVQFQKNT T0359 15 :QGLGITIA 1kwaB 499 :EPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 3 number of extra gaps= 1 total=5088 Number of alignments=1267 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5091 Number of alignments=1268 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQ 1kwaB 488 :SRLVQFQKNTD T0359 16 :GLGITIA 1kwaB 500 :PMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5094 Number of alignments=1269 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 4 :ETFDVELTKNVQGLGITIA 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5096 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 4 :ETFDVELTKNVQGLGITIA 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5098 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTK 1kwaB 488 :SRLVQFQK T0359 13 :NVQGLGITIA 1kwaB 497 :TDEPMGITLK T0359 25 :I 1kwaB 511 :N T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=5102 Number of alignments=1270 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)T95 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELT 1kwaB 488 :SRLVQFQ T0359 12 :KNVQGLGITIA 1kwaB 496 :NTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY T0359 94 :E 1kwaB 573 :E Number of specific fragments extracted= 4 number of extra gaps= 1 total=5106 Number of alignments=1271 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 5 :TFDVELTKNVQGLGITIA 1kwaB 489 :RLVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 2 number of extra gaps= 1 total=5108 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 6 :FDVELTKNVQGLGITIA 1kwaB 490 :LVQFQKNTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=5110 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)Y24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0359)S96 because last residue in template chain is (1kwaB)F574 T0359 5 :TFDVELTKNVQGLGITIA 1kwaB 489 :RLVQFQKNTDEPMGITLK T0359 25 :I 1kwaB 511 :N T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5113 Number of alignments=1272 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0359)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0359)P32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0359 5 :TFDVELT 1kwaB 488 :SRLVQFQ T0359 12 :KNVQGLGITIA 1kwaB 496 :NTDEPMGITLK T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 1 total=5116 Number of alignments=1273 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pdr/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pdr expands to /projects/compbio/data/pdb/1pdr.pdb.gz 1pdr:Warning: there is no chain 1pdr will retry with 1pdrA # T0359 read from 1pdr/merged-a2m # 1pdr read from 1pdr/merged-a2m # adding 1pdr to template set # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0359 95 :TSV 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5119 Number of alignments=1274 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 4 :ETFDVELTKNVQGLGITIAG 1pdr 463 :EPRKVVLHRGSTGLGFNIVG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=5121 Number of alignments=1275 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=5123 Number of alignments=1276 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=5125 Number of alignments=1277 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5127 Number of alignments=1278 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5129 Number of alignments=1279 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 4 :ETFDVELTKNVQGLGITIAG 1pdr 463 :EPRKVVLHRGSTGLGFNIVG T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 483 :GEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5131 Number of alignments=1280 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 6 :FDVELTKNVQGLGITIAGYI 1pdr 465 :RKVVLHRGSTGLGFNIVGGE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 485 :DGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5133 Number of alignments=1281 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0359 95 :TSV 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5136 Number of alignments=1282 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0359 95 :TSV 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5139 Number of alignments=1283 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5141 Number of alignments=1284 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5143 Number of alignments=1285 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5145 Number of alignments=1286 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGY 1pdr 462 :REPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5147 Number of alignments=1287 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGY 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5149 Number of alignments=1288 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGY 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGG T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 484 :EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5151 Number of alignments=1289 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=5153 Number of alignments=1290 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=5155 Number of alignments=1291 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=5157 Number of alignments=1292 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5159 Number of alignments=1293 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=5161 Number of alignments=1294 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5163 Number of alignments=1295 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5165 Number of alignments=1296 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5167 Number of alignments=1297 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=5169 Number of alignments=1298 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE T0359 96 :SV 1pdr 554 :HA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5172 Number of alignments=1299 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0359 95 :TSV 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=5175 Number of alignments=1300 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=5177 Number of alignments=1301 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5179 Number of alignments=1302 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=5181 Number of alignments=1303 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 1 :SMSETFDVELTKNVQGLGITIAGYIGD 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5183 Number of alignments=1304 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0359 2 :MSETFDVELTKNVQGLGITIAGYIGD 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDG T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1pdr 487 :EGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5185 Number of alignments=1305 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iu0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iu0A expands to /projects/compbio/data/pdb/1iu0.pdb.gz 1iu0A:# T0359 read from 1iu0A/merged-a2m # 1iu0A read from 1iu0A/merged-a2m # adding 1iu0A to template set # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1iu0A 5 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5187 Number of alignments=1306 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 7 :DVELTKNVQGLGITIAGYIGDKKL 1iu0A 5 :EITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5189 Number of alignments=1307 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5191 Number of alignments=1308 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5193 Number of alignments=1309 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5195 Number of alignments=1310 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5197 Number of alignments=1311 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5199 Number of alignments=1312 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5201 Number of alignments=1313 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5203 Number of alignments=1314 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKKL 1iu0A 3 :YEEITLERGNSGLGFSIAGGTDNPHI T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5205 Number of alignments=1315 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 29 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5207 Number of alignments=1316 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 29 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5209 Number of alignments=1317 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 29 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5211 Number of alignments=1318 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0359)R92 because last residue in template chain is (1iu0A)R91 T0359 6 :FDVELTKNVQGLGITIAGYIGDKK 1iu0A 4 :EEITLERGNSGLGFSIAGGTDNPH T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1iu0A 29 :GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=5213 Number of alignments=1319 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1n99A/merged-a2m # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNV 1n99A 113 :REVILCKDQ T0359 15 :QGLGITIAGYIG 1n99A 123 :GKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETSV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=5219 Number of alignments=1320 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNV 1n99A 113 :REVILCKDQ T0359 15 :QGLGITIAGYIG 1n99A 123 :GKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETSV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=5225 Number of alignments=1321 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNV 1n99A 113 :REVILCKDQ T0359 15 :QGLGITIAGYIG 1n99A 123 :GKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGET 1n99A 191 :RDRPFE Number of specific fragments extracted= 6 number of extra gaps= 1 total=5231 Number of alignments=1322 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 8 :VELTKNV 1n99A 115 :VILCKDQ T0359 15 :QGLGITIAGYIG 1n99A 123 :GKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGET 1n99A 191 :RDRPFE Number of specific fragments extracted= 6 number of extra gaps= 1 total=5237 Number of alignments=1323 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set T0359 33 :SGIFVKSITKSSAVEHDG 1n99A 134 :NGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLR 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5239 Number of alignments=1324 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM Number of specific fragments extracted= 3 number of extra gaps= 1 total=5242 Number of alignments=1325 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF T0359 95 :TSV 1n99A 271 :PAF Number of specific fragments extracted= 7 number of extra gaps= 1 total=5249 Number of alignments=1326 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF T0359 95 :TSV 1n99A 271 :PAF Number of specific fragments extracted= 7 number of extra gaps= 1 total=5256 Number of alignments=1327 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF T0359 95 :TSV 1n99A 271 :PAF Number of specific fragments extracted= 7 number of extra gaps= 1 total=5263 Number of alignments=1328 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF T0359 95 :TSV 1n99A 271 :PAF Number of specific fragments extracted= 7 number of extra gaps= 1 total=5270 Number of alignments=1329 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRG 1n99A 191 :RDRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=5276 Number of alignments=1330 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRG 1n99A 191 :RDRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=5282 Number of alignments=1331 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRG 1n99A 191 :RDRP Number of specific fragments extracted= 6 number of extra gaps= 1 total=5288 Number of alignments=1332 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRR 1n99A 191 :RDR Number of specific fragments extracted= 6 number of extra gaps= 1 total=5294 Number of alignments=1333 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETSV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=5300 Number of alignments=1334 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETS 1n99A 191 :RDRPFER Number of specific fragments extracted= 6 number of extra gaps= 1 total=5306 Number of alignments=1335 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETS 1n99A 191 :RDRPFER Number of specific fragments extracted= 6 number of extra gaps= 1 total=5312 Number of alignments=1336 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGETS 1n99A 191 :RDRPFER Number of specific fragments extracted= 6 number of extra gaps= 1 total=5318 Number of alignments=1337 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=5324 Number of alignments=1338 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=5330 Number of alignments=1339 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=5336 Number of alignments=1340 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTKNVQG 1n99A 113 :REVILCKDQDG T0359 17 :LGITIAGY 1n99A 125 :IGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0359 82 :GQTVLL 1n99A 183 :GEKITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=5342 Number of alignments=1341 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 5 :TFDVELTKNVQGLGITIAGY 1n99A 113 :REVILCKDQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0359 91 :RRGETSV 1n99A 191 :RDRPFER Number of specific fragments extracted= 4 number of extra gaps= 1 total=5346 Number of alignments=1342 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 5 :TFDVELTKNVQGLGITIAGY 1n99A 113 :REVILCKDQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0359 91 :RRGETSV 1n99A 191 :RDRPFER Number of specific fragments extracted= 4 number of extra gaps= 1 total=5350 Number of alignments=1343 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELT 1n99A 113 :REVILC T0359 12 :KNVQGLGITIAGYIG 1n99A 120 :DQDGKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0359 91 :RRGETS 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=5355 Number of alignments=1344 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELTK 1n99A 113 :REVILCK T0359 13 :NVQGLGITIAGY 1n99A 121 :QDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG T0359 84 :TVLL 1n99A 185 :KITM T0359 90 :MRRGET 1n99A 191 :RDRPFE Number of specific fragments extracted= 6 number of extra gaps= 1 total=5361 Number of alignments=1345 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 5 :TFDVELTKNVQGLGITIAGY 1n99A 113 :REVILCKDQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0359 91 :RRGE 1n99A 191 :RDRP Number of specific fragments extracted= 4 number of extra gaps= 1 total=5365 Number of alignments=1346 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 5 :TFDVELTKNVQGLGITIAGY 1n99A 113 :REVILCKDQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0359 91 :RRGE 1n99A 191 :RDRP Number of specific fragments extracted= 4 number of extra gaps= 1 total=5369 Number of alignments=1347 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0359 34 :GIFVKSITKSSAVEHDG 1n99A 135 :GIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE T0359 85 :VLL 1n99A 186 :ITM T0359 90 :MRRG 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=5374 Number of alignments=1348 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0359)T5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0359 6 :FDVELT 1n99A 113 :REVILC T0359 12 :KNVQGLGITIAGY 1n99A 120 :DQDGKIGLRLKSI T0359 32 :PSGIFVKSITKSSAVEHDG 1n99A 133 :DNGIFVQLVQANSPASLVG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG T0359 84 :TVLL 1n99A 185 :KITM T0359 90 :MRRGE 1n99A 191 :RDRPF Number of specific fragments extracted= 6 number of extra gaps= 1 total=5380 Number of alignments=1349 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1g9oA/merged-a2m # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5383 Number of alignments=1350 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5386 Number of alignments=1351 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5389 Number of alignments=1352 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD Number of specific fragments extracted= 3 number of extra gaps= 0 total=5392 Number of alignments=1353 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYI 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1g9oA 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5395 Number of alignments=1354 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYI 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1g9oA 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5398 Number of alignments=1355 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYI 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1g9oA 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5401 Number of alignments=1356 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYI 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEK T0359 31 :EPSGIFVKSITKSSAVEHDG 1g9oA 33 :GKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5404 Number of alignments=1357 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 1 :SM 1g9oA 9 :RM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5408 Number of alignments=1358 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 1 :SM 1g9oA 9 :RM T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5412 Number of alignments=1359 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5415 Number of alignments=1360 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5418 Number of alignments=1361 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHG T0359 30 :LEPSGIFVKSITKSSAVEHD 1g9oA 32 :KGKLGQYIRLVEPGSPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5422 Number of alignments=1362 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHG T0359 30 :LEPSGIFVKSITKSSAVEHD 1g9oA 32 :KGKLGQYIRLVEPGSPAEKA T0359 51 :RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1g9oA 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5425 Number of alignments=1363 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 10 :LTKNVQGLGITIAGYIGDK 1g9oA 17 :LEKGPNGYGFHLHGEKGKL T0359 34 :GIFVKSITKSSAVEHDGRIQ 1g9oA 36 :GQYIRLVEPGSPAEKAGLLA T0359 55 :GDQIIAVDGTNLQGFTNQQAVEVLR 1g9oA 56 :GDRLVEVNGENVEKETHQQVVSRIR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5428 Number of alignments=1364 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 10 :LTKNVQGLGITIAGYIGD 1g9oA 17 :LEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDGRI 1g9oA 35 :LGQYIRLVEPGSPAEKAGLL T0359 54 :IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLL 1g9oA 55 :AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=5431 Number of alignments=1365 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5435 Number of alignments=1366 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5439 Number of alignments=1367 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5443 Number of alignments=1368 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGY 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGE T0359 30 :LEPSGIFVKSITKSSAVEHDG 1g9oA 32 :KGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5447 Number of alignments=1369 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAG 1g9oA 12 :PRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5450 Number of alignments=1370 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAG 1g9oA 12 :PRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5453 Number of alignments=1371 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHG T0359 29 :KLEPSGIFVKSITKSSAVEHDG 1g9oA 31 :EKGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5457 Number of alignments=1372 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGY 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGE T0359 30 :LEPSGIFVKSITKSSAVEHDG 1g9oA 32 :KGKLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0359 95 :TSV 1g9oA 97 :EQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5461 Number of alignments=1373 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5464 Number of alignments=1374 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5467 Number of alignments=1375 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5470 Number of alignments=1376 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5473 Number of alignments=1377 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD Number of specific fragments extracted= 3 number of extra gaps= 0 total=5476 Number of alignments=1378 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIG 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5479 Number of alignments=1379 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETS 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5482 Number of alignments=1380 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5485 Number of alignments=1381 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0359 94 :ETSV 1g9oA 96 :DEQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5489 Number of alignments=1382 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0359 96 :SV 1g9oA 98 :QL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5493 Number of alignments=1383 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0359 94 :ETSV 1g9oA 96 :DEQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5497 Number of alignments=1384 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0359 93 :GETSV 1g9oA 95 :TDEQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5501 Number of alignments=1385 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5504 Number of alignments=1386 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIGD 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 3 number of extra gaps= 0 total=5507 Number of alignments=1387 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1g9oA)R9 T0359 3 :SETFDVELTKNVQGLGITIAGYIG 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0359 32 :PSGIFVKSITKSSAVEHDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5510 Number of alignments=1388 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0359 3 :SETFDVELTKNVQGLGITIAGYIGD 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGK T0359 33 :SGIFVKSITKSSAVEHDG 1g9oA 35 :LGQYIRLVEPGSPAEKAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGETSV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5513 Number of alignments=1389 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l6oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l6oA expands to /projects/compbio/data/pdb/1l6o.pdb.gz 1l6oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0359 read from 1l6oA/merged-a2m # 1l6oA read from 1l6oA/merged-a2m # adding 1l6oA to template set # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5527 Number of alignments=1390 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5541 Number of alignments=1391 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 11 total=5555 Number of alignments=1392 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0359 6 :FD 1l6oA 253 :IT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5569 Number of alignments=1393 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5583 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0359 1 :S 1l6oA 251 :M T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 15 number of extra gaps= 13 total=5598 Number of alignments=1394 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0359 6 :FD 1l6oA 253 :IT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5612 Number of alignments=1395 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0359 6 :FD 1l6oA 253 :IT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5626 Number of alignments=1396 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DKK 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL Number of specific fragments extracted= 8 number of extra gaps= 9 total=5634 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I Number of specific fragments extracted= 10 number of extra gaps= 9 total=5644 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5657 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5670 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5683 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5696 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5709 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 T0359 6 :FD 1l6oA 253 :IT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5722 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5735 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5748 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5761 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5774 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5787 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5801 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5814 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 T0359 6 :FD 1l6oA 253 :IT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5827 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 29 :KLE 1l6oA 275 :ERG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5840 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LTK 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :DK 1l6oA 275 :ER T0359 31 :E 1l6oA 277 :G T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5854 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 4 :ETF 1l6oA 252 :IIT T0359 9 :ELT 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5868 Number of alignments=1397 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)S3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 4 :ETF 1l6oA 252 :IIT T0359 9 :ELT 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5882 Number of alignments=1398 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :L 1l6oA 257 :L T0359 11 :T 1l6oA 259 :M T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 80 :HTGQTVL 1l6oA 329 :HKPGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5896 Number of alignments=1399 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5910 Number of alignments=1400 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0359 4 :ETF 1l6oA 252 :IIT T0359 9 :ELT 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I Number of specific fragments extracted= 12 number of extra gaps= 10 total=5922 Number of alignments=1401 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0359 5 :TF 1l6oA 253 :IT T0359 9 :ELT 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :TGQT 1l6oA 327 :IVHK Number of specific fragments extracted= 12 number of extra gaps= 10 total=5934 Number of alignments=1402 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)D7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 4 :ETF 1l6oA 252 :IIT T0359 9 :ELT 1l6oA 257 :LNM T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 80 :HTGQTVL 1l6oA 329 :HKPGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5947 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0359)E4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0359)V8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0359)E9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0359)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0359)N13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0359)V14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0359)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0359)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0359)L17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0359)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0359)T20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0359)I25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0359)G26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0359)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0359)S33 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0359)G34 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0359)V46 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0359)E47 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0359)D62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0359)G63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0359)N65 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0359)L66 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0359)G68 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0359)F69 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0359)T70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0359)R79 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0359)H80 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0359)L87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0359)T88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0359)L89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0359)M90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0359)R92 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0359)G93 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0359)E94 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0359)T95 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0359)S96 because last residue in template chain is (1l6oA)H345 T0359 5 :TFD 1l6oA 252 :IIT T0359 10 :LT 1l6oA 257 :LN T0359 18 :G 1l6oA 266 :G T0359 21 :IAGY 1l6oA 269 :IVGQ T0359 27 :D 1l6oA 275 :E T0359 30 :LE 1l6oA 276 :RG T0359 35 :IFVKSITKSSA 1l6oA 281 :IYIGSIMKGGA T0359 48 :HDGRIQIGDQIIAV 1l6oA 294 :ADGRIEPGDMLLQV T0359 64 :T 1l6oA 310 :I T0359 67 :Q 1l6oA 313 :E T0359 71 :NQQAVEVL 1l6oA 317 :NDDAVRVL T0359 81 :T 1l6oA 327 :I T0359 82 :GQTVL 1l6oA 331 :PGPIV T0359 91 :R 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5961 Number of alignments=1403 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q3oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1q3oA/merged-a2m # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELT 1q3oA 585 :YIIKEKTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLE 1q3oA 597 :KDSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5965 Number of alignments=1404 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELT 1q3oA 585 :YIIKEKTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLE 1q3oA 597 :KDSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5969 Number of alignments=1405 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 2 :MSETFDVELT 1q3oA 586 :IIKEKTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLE 1q3oA 597 :KDSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5973 Number of alignments=1406 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 4 :ETFDVELT 1q3oA 588 :KEKTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLE 1q3oA 597 :KDSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5977 Number of alignments=1407 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTK 1q3oA 585 :YIIKEKTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLE 1q3oA 598 :DSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5982 Number of alignments=1408 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTK 1q3oA 585 :YIIKEKTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLE 1q3oA 598 :DSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5987 Number of alignments=1409 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTK 1q3oA 590 :KTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLE 1q3oA 598 :DSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5992 Number of alignments=1410 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 4 :ETFDVELTK 1q3oA 588 :KEKTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLE 1q3oA 598 :DSEGFGFVLRGAKAQTPIE T0359 32 :PSGIFVKSITKSSAVEHDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5997 Number of alignments=1411 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTKNVQ 1q3oA 585 :YIIKEKTVLLQKKDS T0359 16 :GLGITIAGYIG 1q3oA 601 :GFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=6002 Number of alignments=1412 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTKNVQ 1q3oA 585 :YIIKEKTVLLQKKDS T0359 16 :GLGITIAGYIG 1q3oA 601 :GFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0359 91 :R 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=6007 Number of alignments=1413 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 2 :MSETFDVELTKNVQ 1q3oA 586 :IIKEKTVLLQKKDS T0359 16 :GLGITIAGYIG 1q3oA 601 :GFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=6011 Number of alignments=1414 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 4 :ETFDVELTKNVQ 1q3oA 588 :KEKTVLLQKKDS T0359 16 :GLGITIAGYIG 1q3oA 601 :GFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=6015 Number of alignments=1415 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 44 :SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 636 :GGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=6016 Number of alignments=1416 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 39 :SIT 1q3oA 632 :SVD T0359 43 :SSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1q3oA 635 :EGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=6018 Number of alignments=1417 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 1 :SMSETFDVELTKNVQ 1q3oA 585 :YIIKEKTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6022 Number of alignments=1418 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 1 :SMSETFDVELTKNVQ 1q3oA 585 :YIIKEKTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6026 Number of alignments=1419 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELTKNVQ 1q3oA 590 :KTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=6031 Number of alignments=1420 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELTKNVQ 1q3oA 590 :KTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=6036 Number of alignments=1421 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 4 :ETFDVELTKNVQ 1q3oA 588 :KEKTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=6040 Number of alignments=1422 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 5 :TFDVELTK 1q3oA 589 :EKTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLEPS 1q3oA 598 :DSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 4 number of extra gaps= 0 total=6044 Number of alignments=1423 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTKNVQ 1q3oA 590 :KTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6048 Number of alignments=1424 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTKNVQ 1q3oA 590 :KTVLLQKKDS T0359 16 :GLGITIAGYIGDKKLEPS 1q3oA 601 :GFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6052 Number of alignments=1425 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTK 1q3oA 585 :YIIKEKTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLEPS 1q3oA 598 :DSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6056 Number of alignments=1426 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 1 :SMSETFDVELTKNV 1q3oA 585 :YIIKEKTVLLQKKD T0359 15 :QGLGITIAGYIGDKKLEPS 1q3oA 600 :EGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6060 Number of alignments=1427 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELTKNV 1q3oA 590 :KTVLLQKKD T0359 15 :QGLGITIAGYIGDKKLEPS 1q3oA 600 :EGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=6065 Number of alignments=1428 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELTKNVQG 1q3oA 590 :KTVLLQKKDSE T0359 17 :LGITIAGYIGDKKLEPS 1q3oA 602 :FGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=6070 Number of alignments=1429 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 6 :FDVELTK 1q3oA 590 :KTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLEPS 1q3oA 598 :DSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=6074 Number of alignments=1430 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 6 :FDVELTK 1q3oA 590 :KTVLLQK T0359 13 :NVQGLGITIAGYIGDKKLEPS 1q3oA 598 :DSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=6078 Number of alignments=1431 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTKNV 1q3oA 590 :KTVLLQKKD T0359 15 :QGLGITIAGYIGDKKLEPS 1q3oA 600 :EGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6082 Number of alignments=1432 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTKNVQG 1q3oA 590 :KTVLLQKKDSE T0359 17 :LGITIAGYIGDKKLEPS 1q3oA 602 :FGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6086 Number of alignments=1433 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=6089 Number of alignments=1434 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=6092 Number of alignments=1435 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELTKNVQGLGITIAGYIG 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6096 Number of alignments=1436 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 4 :ET 1q3oA 585 :YI T0359 6 :FDVELT 1q3oA 590 :KTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLEPS 1q3oA 597 :KDSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=6101 Number of alignments=1437 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 2 :MSETFDVELTKNVQGLGITIAGYIG 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=6104 Number of alignments=1438 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1q3oA 589 :EKTVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=6107 Number of alignments=1439 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 6 :FDVELTKNVQGLGITIAGYIG 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKA T0359 27 :DKKLEPSGIFVKSITKSSAVEHDG 1q3oA 620 :PTPAFPALQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=6110 Number of alignments=1440 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0359)T95 because last residue in template chain is (1q3oA)H687 T0359 5 :TFDVELT 1q3oA 589 :EKTVLLQ T0359 12 :KNVQGLGITIAGYIGDKKLEPS 1q3oA 597 :KDSEGFGFVLRGAKAQTPIEEF T0359 34 :GIFVKSITKSSAVEHDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0359 52 :IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=6114 Number of alignments=1441 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7fA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1n7fA/merged-a2m # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6116 Number of alignments=1442 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6118 Number of alignments=1443 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6120 Number of alignments=1444 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6122 Number of alignments=1445 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 695 :PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6124 Number of alignments=1446 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 695 :PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6126 Number of alignments=1447 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGDKK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 695 :PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6128 Number of alignments=1448 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 5 :TFDVELTKNVQGLGITIAGYIGDKK 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPFD T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 695 :PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6130 Number of alignments=1449 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6132 Number of alignments=1450 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 2 :M 1n7fA 669 :I T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=6135 Number of alignments=1451 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 8 :VELTKNVQGLGITIAGYIG 1n7fA 673 :VELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6137 Number of alignments=1452 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 7 :DVELTKNVQGLGITIAGYIG 1n7fA 672 :TVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6139 Number of alignments=1453 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 6 :FDVELTKNVQGLGITIAG 1n7fA 671 :YTVELKRYGGPLGITISG T0359 28 :KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1n7fA 689 :TEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=6141 Number of alignments=1454 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 6 :FDVELTKNVQGLGITIAGYI 1n7fA 671 :YTVELKRYGGPLGITISGTE T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 691 :EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6143 Number of alignments=1455 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6145 Number of alignments=1456 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6147 Number of alignments=1457 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6149 Number of alignments=1458 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6151 Number of alignments=1459 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 5 :TFDVELTKNVQGLGITIAGY 1n7fA 670 :IYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6153 Number of alignments=1460 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 5 :TFDVELTKNVQGLGITIAGY 1n7fA 670 :IYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6155 Number of alignments=1461 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6157 Number of alignments=1462 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGY 1n7fA 669 :IIYTVELKRYGGPLGITISGT T0359 29 :KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 690 :EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6159 Number of alignments=1463 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6161 Number of alignments=1464 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6163 Number of alignments=1465 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6165 Number of alignments=1466 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6167 Number of alignments=1467 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6169 Number of alignments=1468 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 5 :TFDVELTKNVQGLGITIAGYIG 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6171 Number of alignments=1469 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6173 Number of alignments=1470 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0359 31 :EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 692 :PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6175 Number of alignments=1471 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6177 Number of alignments=1472 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6179 Number of alignments=1473 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6181 Number of alignments=1474 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6183 Number of alignments=1475 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=6185 Number of alignments=1476 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6187 Number of alignments=1477 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6189 Number of alignments=1478 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0359)R92 because last residue in template chain is (1n7fA)Q753 T0359 4 :ETFDVELTKNVQGLGITIAGYIGD 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEP T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1n7fA 693 :FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=6191 Number of alignments=1479 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ihjA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0359 read from 1ihjA/merged-a2m # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6195 Number of alignments=1480 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6199 Number of alignments=1481 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 4 :ETFDVELTKNVQ 1ihjA 14 :LIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6203 Number of alignments=1482 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 4 :ETFDVELTKNVQ 1ihjA 14 :LIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6207 Number of alignments=1483 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGYIGDK 1ihjA 27 :SFGICIVRGEVKD T0359 32 :PS 1ihjA 43 :TK T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6211 Number of alignments=1484 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGYIGDK 1ihjA 27 :SFGICIVRGEVKD T0359 32 :PS 1ihjA 43 :TK T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6215 Number of alignments=1485 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNVQ 1ihjA 15 :IHMVTLDKTGK T0359 16 :GLGITIAGYIGDK 1ihjA 27 :SFGICIVRGEVKD T0359 32 :PS 1ihjA 43 :TK T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6219 Number of alignments=1486 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)L30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)E31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNVQ 1ihjA 15 :IHMVTLDKTGK T0359 16 :GLGITIAGYIGDK 1ihjA 27 :SFGICIVRGEVKD T0359 32 :PS 1ihjA 43 :TK T0359 34 :GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6223 Number of alignments=1487 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTK 1ihjA 13 :ELIHMVTLDK T0359 13 :NVQGLGITIAGYIGDK 1ihjA 24 :GKKSFGICIVRGEVKD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6226 Number of alignments=1488 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTK 1ihjA 13 :ELIHMVTLDK T0359 13 :NVQGLGITIAGYIGDK 1ihjA 24 :GKKSFGICIVRGEVKD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6229 Number of alignments=1489 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTK 1ihjA 15 :IHMVTLDK T0359 13 :NVQGLGITIAGYIGDK 1ihjA 24 :GKKSFGICIVRGEVKD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 3 number of extra gaps= 1 total=6232 Number of alignments=1490 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTK 1ihjA 15 :IHMVTLDK T0359 13 :NVQGLGITIAGYIGDK 1ihjA 24 :GKKSFGICIVRGEVKD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 3 number of extra gaps= 1 total=6235 Number of alignments=1491 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTK 1ihjA 13 :ELIHMVTLDK T0359 13 :NVQGLGITIAG 1ihjA 24 :GKKSFGICIVR T0359 30 :LE 1ihjA 36 :EV T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=6239 Number of alignments=1492 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 4 :ETFDVELTK 1ihjA 14 :LIHMVTLDK T0359 13 :NVQGLGITIAG 1ihjA 24 :GKKSFGICIVR T0359 30 :LE 1ihjA 36 :EV T0359 32 :PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=6243 Number of alignments=1493 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0359 33 :SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 1ihjA 46 :TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 1 number of extra gaps= 0 total=6244 Number of alignments=1494 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKI Number of specific fragments extracted= 1 number of extra gaps= 1 total=6245 Number of alignments=1495 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6249 Number of alignments=1496 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6253 Number of alignments=1497 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGYI 1ihjA 27 :SFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6257 Number of alignments=1498 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6261 Number of alignments=1499 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNVQ 1ihjA 15 :IHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6265 Number of alignments=1500 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNVQ 1ihjA 15 :IHMVTLDKTGK T0359 16 :GLGITIAGY 1ihjA 27 :SFGICIVRG T0359 25 :IG 1ihjA 38 :KD T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6269 Number of alignments=1501 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGYI 1ihjA 27 :SFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6273 Number of alignments=1502 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 4 :ETFDVELTKNV 1ihjA 14 :LIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6277 Number of alignments=1503 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNVQ 1ihjA 13 :ELIHMVTLDKTGK T0359 16 :GLGITIAGYI 1ihjA 27 :SFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6281 Number of alignments=1504 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6285 Number of alignments=1505 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6289 Number of alignments=1506 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6293 Number of alignments=1507 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNVQ 1ihjA 15 :IHMVTLDKTGK T0359 16 :GLGITIAGYI 1ihjA 27 :SFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=6297 Number of alignments=1508 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 5 :TFDVELTKNV 1ihjA 15 :IHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6301 Number of alignments=1509 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6305 Number of alignments=1510 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYI 1ihjA 26 :KSFGICIVRGE T0359 26 :G 1ihjA 39 :D T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=6309 Number of alignments=1511 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1ihjA 15 :IHMVTLDKTGKKSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=6311 Number of alignments=1512 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)S3 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1ihjA 15 :IHMVTLDKTGKKSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=6313 Number of alignments=1513 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYIG 1ihjA 26 :KSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6316 Number of alignments=1514 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYIG 1ihjA 26 :KSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6319 Number of alignments=1515 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1ihjA 15 :IHMVTLDKTGKKSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=6321 Number of alignments=1516 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0359 4 :ETFDVELTKNVQGLGITIAGYIG 1ihjA 15 :IHMVTLDKTGKKSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=6323 Number of alignments=1517 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYIG 1ihjA 26 :KSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6326 Number of alignments=1518 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0359)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0359)D27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0359)K28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0359)K29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0359)R92 because last residue in template chain is (1ihjA)F105 T0359 3 :SETFDVELTKNV 1ihjA 13 :ELIHMVTLDKTG T0359 15 :QGLGITIAGYIG 1ihjA 26 :KSFGICIVRGEV T0359 30 :LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=6329 Number of alignments=1519 # command:NUMB_ALIGNS: 1519 evalue: 0 0.0000, weight 33.8074 evalue: 1 0.0000, weight 33.5422 evalue: 2 0.0000, weight 33.1905 evalue: 3 0.0000, weight 32.8332 evalue: 4 0.0000, weight 31.9722 evalue: 5 0.0000, weight 31.6457 evalue: 6 0.0000, weight 30.1277 evalue: 7 0.0000, weight 28.4435 evalue: 8 0.0000, weight 26.9691 evalue: 9 0.0000, weight 26.5521 evalue: 10 0.0000, weight 35.3042 evalue: 11 0.0000, weight 34.7340 evalue: 12 0.0000, weight 33.4431 evalue: 13 0.0000, weight 33.3576 evalue: 14 0.0000, weight 32.5123 evalue: 15 0.0000, weight 31.2586 evalue: 16 0.0000, weight 29.1897 evalue: 17 0.0000, weight 27.9704 evalue: 18 0.0000, weight 27.7987 evalue: 19 0.0000, weight 26.3973 evalue: 20 0.0000, weight 36.8111 evalue: 21 0.0000, weight 36.2488 evalue: 22 0.0000, weight 35.6303 evalue: 23 0.0000, weight 35.5741 evalue: 24 0.0000, weight 33.5981 evalue: 25 0.0000, weight 30.9954 evalue: 26 0.0000, weight 30.6018 evalue: 27 0.0000, weight 28.8941 evalue: 28 0.0000, weight 28.7913 evalue: 29 0.0000, weight 28.7214 evalue: 30 0.0000, weight 34.9773 evalue: 31 0.0000, weight 34.6689 evalue: 32 0.0000, weight 34.1641 evalue: 33 0.0000, weight 33.8347 evalue: 34 0.0000, weight 32.6162 evalue: 35 0.0000, weight 32.1811 evalue: 36 0.0000, weight 30.0084 evalue: 37 0.0000, weight 29.0842 evalue: 38 0.0000, weight 27.7327 evalue: 39 0.0000, weight 26.9416 evalue: 40 0.4266, weight 1.6150 evalue: 41 0.4266, weight 1.6150 evalue: 42 0.4266, weight 1.6150 evalue: 43 0.4266, weight 1.6150 evalue: 44 0.4266, weight 1.6150 evalue: 45 0.4266, weight 1.6150 evalue: 46 0.4266, weight 1.6150 evalue: 47 0.4266, weight 1.6150 evalue: 48 0.4266, weight 1.6150 evalue: 49 0.4266, weight 1.6150 evalue: 50 0.4266, weight 1.6150 evalue: 51 0.4266, weight 1.6150 evalue: 52 0.4266, weight 1.6150 evalue: 53 0.4266, weight 1.6150 evalue: 54 0.0000, weight 34.6689 evalue: 55 0.0000, weight 34.6689 evalue: 56 0.0000, weight 34.6689 evalue: 57 0.0000, weight 34.6689 evalue: 58 0.0000, weight 34.6689 evalue: 59 0.0000, weight 34.6689 evalue: 60 0.0000, weight 34.6689 evalue: 61 0.0000, weight 34.6689 evalue: 62 0.0000, weight 34.6689 evalue: 63 0.0000, weight 34.6689 evalue: 64 0.0000, weight 34.6689 evalue: 65 0.0000, weight 34.6689 evalue: 66 0.0000, weight 34.6689 evalue: 67 0.0000, weight 34.6689 evalue: 68 0.0000, weight 34.6689 evalue: 69 0.0000, weight 34.6689 evalue: 70 0.0000, weight 34.6689 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weight 30.6178 evalue: 1518 0.0000, weight 30.6178 RES2ATOM 0 2 RES2ATOM 1 8 RES2ATOM 2 16 RES2ATOM 3 22 RES2ATOM 4 31 RES2ATOM 5 38 RES2ATOM 6 49 RES2ATOM 7 57 RES2ATOM 8 64 RES2ATOM 9 73 RES2ATOM 10 81 RES2ATOM 11 88 RES2ATOM 12 97 RES2ATOM 13 105 RES2ATOM 14 112 RES2ATOM 16 125 RES2ATOM 18 137 RES2ATOM 19 145 RES2ATOM 20 152 RES2ATOM 21 160 RES2ATOM 23 169 RES2ATOM 24 181 RES2ATOM 26 193 RES2ATOM 27 201 RES2ATOM 28 210 RES2ATOM 29 219 RES2ATOM 30 227 RES2ATOM 31 236 RES2ATOM 32 243 RES2ATOM 34 253 RES2ATOM 35 261 RES2ATOM 36 272 RES2ATOM 37 279 RES2ATOM 38 288 RES2ATOM 39 294 RES2ATOM 40 302 RES2ATOM 41 309 RES2ATOM 42 318 RES2ATOM 43 324 RES2ATOM 44 330 RES2ATOM 45 335 RES2ATOM 46 342 RES2ATOM 47 351 RES2ATOM 48 361 RES2ATOM 50 373 RES2ATOM 51 384 RES2ATOM 52 392 RES2ATOM 53 401 RES2ATOM 55 413 RES2ATOM 56 421 RES2ATOM 57 430 RES2ATOM 58 438 RES2ATOM 59 446 RES2ATOM 60 451 RES2ATOM 61 458 RES2ATOM 63 470 RES2ATOM 64 477 RES2ATOM 65 485 RES2ATOM 66 493 RES2ATOM 68 506 RES2ATOM 69 517 RES2ATOM 70 524 RES2ATOM 71 532 RES2ATOM 72 541 RES2ATOM 73 550 RES2ATOM 74 555 RES2ATOM 75 562 RES2ATOM 76 571 RES2ATOM 77 578 RES2ATOM 78 586 RES2ATOM 79 597 RES2ATOM 80 607 RES2ATOM 82 618 RES2ATOM 83 627 RES2ATOM 84 634 RES2ATOM 85 641 RES2ATOM 86 649 RES2ATOM 87 657 RES2ATOM 88 664 RES2ATOM 89 672 RES2ATOM 90 680 RES2ATOM 91 691 RES2ATOM 93 706 RES2ATOM 94 715 RES2ATOM 95 722 RES2ATOM 96 728 Constraint 273 431 5.4385 6.7981 13.5961 4847.1362 Constraint 295 402 5.1162 6.3952 12.7904 4840.0020 Constraint 273 402 4.4382 5.5478 11.0956 4832.3555 Constraint 295 385 4.6767 5.8458 11.6917 4824.3662 Constraint 273 393 5.4962 6.8702 13.7405 4821.7363 Constraint 273 385 4.8315 6.0394 12.0788 4820.3247 Constraint 273 414 3.6968 4.6211 9.2421 4818.7144 Constraint 262 422 4.3566 5.4458 10.8916 4800.5415 Constraint 452 579 5.0006 6.2507 12.5014 4770.4648 Constraint 262 431 5.7940 7.2425 14.4851 4768.8335 Constraint 452 572 4.2210 5.2763 10.5526 4763.2681 Constraint 471 572 4.7183 5.8979 11.7958 4739.2681 Constraint 289 402 4.9744 6.2180 12.4360 4737.2993 Constraint 280 402 4.9703 6.2129 12.4258 4724.8687 Constraint 262 414 5.4330 6.7913 13.5826 4714.3291 Constraint 254 431 3.8069 4.7586 9.5173 4661.7808 Constraint 431 665 4.6388 5.7985 11.5970 4639.7593 Constraint 459 642 4.4057 5.5071 11.0142 4632.3433 Constraint 459 635 5.1413 6.4266 12.8533 4617.5659 Constraint 439 673 4.5293 5.6616 11.3232 4603.4033 Constraint 153 273 4.9511 6.1889 12.3778 4593.3525 Constraint 153 280 5.1972 6.4965 12.9929 4589.2285 Constraint 161 280 3.6124 4.5155 9.0311 4586.9233 Constraint 153 262 5.3469 6.6837 13.3673 4586.6982 Constraint 153 431 5.5164 6.8956 13.7911 4583.5698 Constraint 161 262 4.4101 5.5126 11.0253 4579.3047 Constraint 254 422 5.4361 6.7951 13.5902 4569.8740 Constraint 439 665 5.1434 6.4293 12.8586 4564.8374 Constraint 138 273 4.3831 5.4788 10.9576 4557.8662 Constraint 254 486 4.3290 5.4113 10.8225 4557.4854 Constraint 146 280 4.0345 5.0432 10.0863 4554.2158 Constraint 138 303 5.5457 6.9322 13.8643 4551.1572 Constraint 146 289 3.6338 4.5422 9.0845 4548.1909 Constraint 146 273 5.8391 7.2989 14.5978 4547.2832 Constraint 138 295 4.1893 5.2366 10.4733 4547.2832 Constraint 254 551 4.0630 5.0787 10.1574 4532.3076 Constraint 138 385 5.0220 6.2775 12.5550 4514.0122 Constraint 126 336 4.4569 5.5711 11.1423 4493.3955 Constraint 138 336 3.5993 4.4991 8.9982 4485.2231 Constraint 422 673 3.7236 4.6545 9.3090 4477.5371 Constraint 452 635 5.2340 6.5425 13.0850 4471.9995 Constraint 422 665 5.0730 6.3412 12.6825 4471.5103 Constraint 126 331 4.3709 5.4637 10.9273 4470.3735 Constraint 254 525 5.3919 6.7399 13.4797 4438.1372 Constraint 414 665 3.4908 4.3635 8.7270 4432.1123 Constraint 153 254 4.2806 5.3507 10.7015 4426.4253 Constraint 431 551 5.6293 7.0367 14.0734 4420.2485 Constraint 161 254 5.9477 7.4346 14.8693 4420.0205 Constraint 138 325 5.7030 7.1288 14.2576 4382.0757 Constraint 414 673 5.4344 6.7929 13.5859 4374.9268 Constraint 385 665 5.5198 6.8997 13.7994 4370.2764 Constraint 459 608 4.7822 5.9777 11.9554 4361.5596 Constraint 452 608 5.4071 6.7589 13.5177 4345.8916 Constraint 452 650 4.6878 5.8597 11.7194 4344.4878 Constraint 452 642 5.8017 7.2521 14.5043 4312.5679 Constraint 138 289 5.3479 6.6849 13.3697 4287.2710 Constraint 153 551 4.9945 6.2431 12.4863 4218.5601 Constraint 414 681 4.5152 5.6440 11.2879 4217.5801 Constraint 431 650 4.7163 5.8953 11.7907 4200.1821 Constraint 447 658 3.3703 4.2129 8.4258 4200.0142 Constraint 295 393 5.5218 6.9023 13.8045 4194.2676 Constraint 447 650 5.6411 7.0514 14.1028 4184.1465 Constraint 74 635 4.0663 5.0829 10.1657 4181.2476 Constraint 58 642 5.7092 7.1365 14.2731 4166.7168 Constraint 126 635 5.0722 6.3402 12.6805 4163.1323 Constraint 126 325 5.5164 6.8955 13.7910 4154.2236 Constraint 74 331 4.1530 5.1912 10.3824 4152.7734 Constraint 439 658 3.7332 4.6666 9.3331 4152.1924 Constraint 65 642 4.1459 5.1824 10.3647 4107.9521 Constraint 65 635 5.5939 6.9924 13.9847 4074.5283 Constraint 153 556 5.5216 6.9021 13.8041 4068.4556 Constraint 431 658 5.9390 7.4237 14.8475 4060.6465 Constraint 126 579 5.3620 6.7025 13.4049 4019.0222 Constraint 39 665 4.6785 5.8481 11.6963 4009.5884 Constraint 74 628 5.5571 6.9464 13.8928 3983.2087 Constraint 50 642 5.1841 6.4801 12.9602 3982.6006 Constraint 273 422 6.1993 7.7491 15.4982 3949.8545 Constraint 153 525 5.3826 6.7283 13.4566 3898.0640 Constraint 89 331 4.6615 5.8268 11.6537 3896.6560 Constraint 254 507 5.3941 6.7426 13.4851 3878.0471 Constraint 65 628 4.9027 6.1284 12.2567 3865.4514 Constraint 82 628 4.4810 5.6012 11.2025 3839.7334 Constraint 58 665 5.0645 6.3306 12.6613 3833.8735 Constraint 161 525 5.7905 7.2381 14.4763 3805.8303 Constraint 58 650 4.1485 5.1856 10.3712 3780.1995 Constraint 74 336 4.9941 6.2426 12.4853 3747.0913 Constraint 82 331 4.8586 6.0732 12.1465 3742.0251 Constraint 50 658 4.3596 5.4495 10.8991 3733.0872 Constraint 58 385 4.9179 6.1474 12.2948 3718.2393 Constraint 39 658 5.6940 7.1175 14.2350 3717.8750 Constraint 32 673 4.3807 5.4759 10.9517 3705.5210 Constraint 82 619 5.0401 6.3001 12.6003 3622.5732 Constraint 32 665 5.5521 6.9401 13.8801 3598.6267 Constraint 273 665 5.9643 7.4554 14.9108 3598.4929 Constraint 89 619 4.8446 6.0557 12.1115 3590.2690 Constraint 50 650 5.6523 7.0654 14.1309 3557.5620 Constraint 74 362 4.7043 5.8804 11.7608 3516.4197 Constraint 459 572 5.4609 6.8261 13.6521 3494.9758 Constraint 393 681 5.5737 6.9671 13.9342 3488.9314 Constraint 486 572 5.5283 6.9104 13.8207 3476.3755 Constraint 153 579 5.9382 7.4227 14.8455 3428.4507 Constraint 385 650 5.9264 7.4081 14.8161 3421.4451 Constraint 32 439 5.3665 6.7081 13.4162 3419.5295 Constraint 74 650 5.4284 6.7855 13.5711 3409.4563 Constraint 32 658 4.8340 6.0425 12.0851 3346.2024 Constraint 170 254 4.9263 6.1579 12.3158 3280.6257 Constraint 89 635 5.3039 6.6299 13.2597 3227.9009 Constraint 170 244 5.1956 6.4944 12.9889 3216.9937 Constraint 452 551 5.4759 6.8449 13.6897 3207.1255 Constraint 170 525 3.4611 4.3263 8.6527 3182.5571 Constraint 58 362 4.6982 5.8727 11.7454 3181.9729 Constraint 74 642 6.0153 7.5192 15.0384 3082.6624 Constraint 82 635 5.8443 7.3054 14.6108 3033.0183 Constraint 65 650 5.8947 7.3684 14.7367 3007.9775 Constraint 422 681 6.0351 7.5438 15.0876 2956.0461 Constraint 58 374 3.9710 4.9638 9.9275 2939.4985 Constraint 273 336 6.1603 7.7004 15.4008 2789.4563 Constraint 452 658 6.2384 7.7980 15.5961 2761.1255 Constraint 39 681 5.1775 6.4719 12.9437 2705.8225 Constraint 170 518 4.0645 5.0806 10.1613 2648.6216 Constraint 98 331 4.4918 5.6147 11.2294 2537.6450 Constraint 89 628 5.8263 7.2829 14.5658 2469.2141 Constraint 170 551 4.6782 5.8477 11.6955 2451.6177 Constraint 414 692 5.4244 6.7805 13.5609 2417.9275 Constraint 50 665 5.8472 7.3089 14.6179 2411.1399 Constraint 170 507 4.9054 6.1318 12.2636 2391.1909 Constraint 447 642 6.1667 7.7083 15.4166 2360.8110 Constraint 23 673 5.4672 6.8340 13.6680 2290.7439 Constraint 146 303 6.1015 7.6268 15.2536 2262.4160 Constraint 58 658 5.9234 7.4043 14.8086 2256.6060 Constraint 74 385 6.0417 7.5521 15.1042 2244.7026 Constraint 182 518 4.5772 5.7215 11.4431 2185.5422 Constraint 89 608 5.6567 7.0709 14.1417 2184.2842 Constraint 39 673 5.8875 7.3593 14.7186 2177.2085 Constraint 65 362 5.4063 6.7579 13.5157 2135.0293 Constraint 170 533 5.9421 7.4276 14.8552 2106.8308 Constraint 422 692 5.0033 6.2541 12.5082 2081.9512 Constraint 170 542 5.8591 7.3238 14.6477 2025.1027 Constraint 32 681 5.7536 7.1920 14.3841 2022.1603 Constraint 98 619 4.9918 6.2397 12.4795 1939.8193 Constraint 113 331 5.1770 6.4713 12.9425 1917.5615 Constraint 39 374 5.4155 6.7694 13.5389 1823.2495 Constraint 98 325 5.6285 7.0356 14.0712 1807.0647 Constraint 244 494 5.0509 6.3137 12.6273 1762.7474 Constraint 146 295 6.0780 7.5975 15.1950 1752.0457 Constraint 17 681 5.1192 6.3990 12.7979 1720.5919 Constraint 17 673 4.9986 6.2483 12.4966 1714.0964 Constraint 23 681 4.2053 5.2566 10.5133 1661.6810 Constraint 182 507 5.4820 6.8526 13.7051 1601.0270 Constraint 138 280 6.1755 7.7193 15.4387 1582.9259 Constraint 439 650 6.2840 7.8550 15.7100 1573.7554 Constraint 182 525 5.5932 6.9915 13.9831 1345.1394 Constraint 170 262 4.3320 5.4149 10.8299 1323.7162 Constraint 113 325 4.6609 5.8261 11.6523 1295.3036 Constraint 161 273 6.1185 7.6481 15.2961 1256.0846 Constraint 431 579 6.2079 7.7598 15.5196 1182.6422 Constraint 74 374 5.3023 6.6278 13.2557 1144.9602 Constraint 58 336 6.1193 7.6491 15.2983 1121.8563 Constraint 106 619 5.4925 6.8656 13.7313 1104.2135 Constraint 17 692 5.0450 6.3062 12.6124 1096.8901 Constraint 393 692 5.4291 6.7864 13.5728 1030.7825 Constraint 459 650 5.7098 7.1373 14.2745 1022.9714 Constraint 254 494 5.9090 7.3862 14.7724 982.0171 Constraint 170 422 5.6900 7.1125 14.2249 970.0250 Constraint 126 608 6.0575 7.5719 15.1438 962.2115 Constraint 74 352 6.1630 7.7038 15.4075 959.2350 Constraint 138 343 6.1461 7.6827 15.3654 907.4128 Constraint 194 525 4.3550 5.4437 10.8874 901.0832 Constraint 194 518 5.9376 7.4220 14.8441 898.9030 Constraint 262 402 5.8437 7.3046 14.6092 879.4819 Constraint 39 414 6.1247 7.6558 15.3116 879.4173 Constraint 237 494 5.4965 6.8706 13.7412 851.8801 Constraint 262 692 5.8982 7.3728 14.7456 842.7017 Constraint 431 673 6.1215 7.6519 15.3038 774.5386 Constraint 374 665 6.2004 7.7505 15.5011 758.6147 Constraint 9 681 5.3549 6.6936 13.3872 754.7482 Constraint 422 494 6.2142 7.7677 15.5354 749.4882 Constraint 50 447 6.1611 7.7014 15.4029 741.3328 Constraint 113 303 5.4853 6.8566 13.7133 734.8688 Constraint 254 439 6.1317 7.6647 15.3293 695.1579 Constraint 402 692 5.9818 7.4773 14.9546 691.5307 Constraint 244 507 6.0625 7.5782 15.1564 678.2217 Constraint 89 325 6.1063 7.6329 15.2659 659.7648 Constraint 161 244 6.0594 7.5743 15.1486 658.1884 Constraint 237 507 5.7419 7.1774 14.3548 650.3633 Constraint 23 692 5.5763 6.9704 13.9409 620.8847 Constraint 82 362 5.9276 7.4095 14.8189 612.1410 Constraint 74 138 6.0019 7.5024 15.0049 606.0345 Constraint 331 635 6.2083 7.7604 15.5208 605.9543 Constraint 82 352 6.0080 7.5100 15.0200 595.9582 Constraint 113 587 5.2639 6.5798 13.1596 595.5577 Constraint 459 579 5.7088 7.1359 14.2719 578.1150 Constraint 65 374 5.4867 6.8584 13.7168 568.6483 Constraint 39 650 5.8820 7.3525 14.7050 559.0838 Constraint 393 665 5.7698 7.2122 14.4245 510.2086 Constraint 244 422 4.9018 6.1272 12.2545 507.5881 Constraint 459 598 5.9115 7.3894 14.7789 507.1410 Constraint 113 319 4.9949 6.2436 12.4872 498.7625 Constraint 471 608 5.7450 7.1813 14.3626 490.3244 Constraint 459 628 5.8581 7.3226 14.6451 467.3007 Constraint 237 422 5.7981 7.2476 14.4952 462.7950 Constraint 58 635 5.5560 6.9450 13.8900 454.0369 Constraint 9 692 5.5627 6.9534 13.9068 451.0634 Constraint 244 486 5.1324 6.4154 12.8309 444.9877 Constraint 414 650 6.2731 7.8414 15.6828 420.6511 Constraint 170 486 6.0983 7.6229 15.2458 406.5623 Constraint 244 439 5.0587 6.3234 12.6468 393.3488 Constraint 244 518 5.8493 7.3116 14.6232 385.6689 Constraint 362 650 6.0801 7.6002 15.2004 384.1776 Constraint 3 681 5.5576 6.9470 13.8940 382.0291 Constraint 138 579 5.9505 7.4381 14.8763 368.5236 Constraint 65 336 5.2919 6.6148 13.2296 368.3266 Constraint 113 608 5.5296 6.9120 13.8240 366.5927 Constraint 431 494 6.3397 7.9246 15.8492 365.9291 Constraint 237 518 5.1281 6.4101 12.8202 365.0631 Constraint 579 650 5.9088 7.3860 14.7721 358.7415 Constraint 254 556 5.6176 7.0220 14.0440 355.9114 Constraint 211 422 5.9705 7.4632 14.9263 340.9479 Constraint 65 385 5.8352 7.2940 14.5880 326.6957 Constraint 244 431 5.3238 6.6547 13.3095 324.4290 Constraint 170 494 5.9782 7.4728 14.9456 319.9217 Constraint 106 331 5.1854 6.4817 12.9634 318.8904 Constraint 138 431 6.2270 7.7837 15.5675 314.5201 Constraint 98 628 5.0966 6.3708 12.7415 313.7452 Constraint 146 402 6.0490 7.5613 15.1225 304.0630 Constraint 65 331 4.1921 5.2401 10.4802 302.4229 Constraint 98 635 5.6508 7.0635 14.1270 302.0455 Constraint 98 352 5.9493 7.4366 14.8733 293.5691 Constraint 402 723 4.7063 5.8829 11.7658 293.4153 Constraint 113 579 5.7051 7.1314 14.2628 293.2073 Constraint 220 518 5.4505 6.8131 13.6261 291.2137 Constraint 182 254 6.0416 7.5520 15.1040 290.6992 Constraint 50 385 5.1000 6.3750 12.7499 282.2315 Constraint 3 692 4.5553 5.6941 11.3882 281.4060 Constraint 244 525 6.0305 7.5381 15.0762 278.8164 Constraint 422 716 5.5373 6.9217 13.8433 278.5406 Constraint 39 642 5.2344 6.5430 13.0860 278.4743 Constraint 254 579 5.8992 7.3740 14.7480 278.0604 Constraint 39 393 5.9513 7.4391 14.8783 277.4525 Constraint 202 422 6.2795 7.8494 15.6988 274.9156 Constraint 336 650 5.9099 7.3873 14.7747 274.1842 Constraint 138 402 5.9563 7.4454 14.8908 272.5938 Constraint 58 628 5.1566 6.4458 12.8916 270.3070 Constraint 182 494 4.0235 5.0294 10.0588 264.6109 Constraint 478 658 6.3641 7.9551 15.9102 263.8041 Constraint 182 533 5.0405 6.3007 12.6013 261.8538 Constraint 74 619 4.8626 6.0782 12.1564 259.2525 Constraint 194 262 6.0692 7.5865 15.1730 256.4463 Constraint 228 518 4.8942 6.1177 12.2354 254.4229 Constraint 23 665 5.4707 6.8384 13.6768 252.9294 Constraint 194 280 5.5310 6.9138 13.8275 252.2220 Constraint 237 525 4.9307 6.1634 12.3268 250.2438 Constraint 393 716 5.0046 6.2557 12.5115 249.1869 Constraint 486 650 5.9536 7.4420 14.8840 247.0964 Constraint 65 665 5.2458 6.5573 13.1146 245.8302 Constraint 202 402 6.1736 7.7170 15.4341 241.3166 Constraint 254 452 6.2614 7.8268 15.6535 240.9713 Constraint 244 551 6.2474 7.8092 15.6185 238.6943 Constraint 39 385 5.6779 7.0973 14.1947 236.9114 Constraint 50 673 5.5557 6.9447 13.8894 234.7689 Constraint 228 507 5.1402 6.4253 12.8506 233.8164 Constraint 228 525 5.7379 7.1723 14.3446 231.1010 Constraint 82 650 5.5370 6.9213 13.8425 230.3400 Constraint 254 518 5.7018 7.1272 14.2544 230.2201 Constraint 161 289 6.1824 7.7280 15.4559 227.0404 Constraint 374 650 5.9319 7.4149 14.8299 224.6343 Constraint 393 707 6.1610 7.7013 15.4025 224.1930 Constraint 244 673 6.0726 7.5907 15.1815 224.0922 Constraint 202 692 6.1594 7.6992 15.3985 223.4745 Constraint 50 374 4.2351 5.2939 10.5878 221.5551 Constraint 138 331 5.9089 7.3861 14.7723 219.4660 Constraint 65 658 5.4230 6.7788 13.5575 217.1210 Constraint 23 658 4.9744 6.2180 12.4361 215.0128 Constraint 202 525 4.6893 5.8616 11.7232 213.0552 Constraint 23 439 5.4419 6.8024 13.6048 210.7842 Constraint 126 385 6.2452 7.8066 15.6131 210.5703 Constraint 32 447 5.8097 7.2621 14.5242 209.6537 Constraint 220 525 5.3727 6.7159 13.4317 209.6031 Constraint 58 414 6.1388 7.6735 15.3470 208.3971 Constraint 50 362 4.4669 5.5836 11.1673 207.7817 Constraint 98 608 5.5220 6.9025 13.8051 206.9100 Constraint 295 362 4.9372 6.1715 12.3431 206.7876 Constraint 452 598 6.3851 7.9814 15.9629 205.7914 Constraint 3 393 6.2187 7.7734 15.5467 205.7783 Constraint 32 692 5.0474 6.3092 12.6184 204.2140 Constraint 194 494 5.1318 6.4148 12.8295 203.5246 Constraint 374 681 5.9118 7.3898 14.7796 203.4915 Constraint 50 681 5.0216 6.2770 12.5540 198.6734 Constraint 228 494 5.3675 6.7094 13.4188 191.1662 Constraint 89 352 6.3796 7.9745 15.9490 189.0724 Constraint 459 619 6.1051 7.6314 15.2628 183.1747 Constraint 170 280 6.2736 7.8420 15.6841 182.7295 Constraint 82 336 4.6389 5.7987 11.5973 182.4216 Constraint 170 556 6.2538 7.8173 15.6346 179.0427 Constraint 82 608 5.4112 6.7640 13.5281 178.1307 Constraint 402 716 6.2804 7.8505 15.7010 177.0795 Constraint 471 542 6.2926 7.8657 15.7314 176.8515 Constraint 17 707 5.4281 6.7851 13.5703 176.0470 Constraint 170 431 4.1459 5.1824 10.3647 174.2077 Constraint 126 650 5.4771 6.8464 13.6928 168.1036 Constraint 9 673 4.7714 5.9642 11.9284 167.4948 Constraint 211 280 6.2487 7.8109 15.6218 163.3756 Constraint 106 325 4.9993 6.2492 12.4983 161.9417 Constraint 194 507 5.5240 6.9050 13.8100 160.3784 Constraint 447 665 5.1304 6.4130 12.8261 159.2526 Constraint 393 723 5.8023 7.2529 14.5058 158.2285 Constraint 486 658 6.2266 7.7833 15.5665 157.2685 Constraint 17 422 5.6361 7.0451 14.0902 156.2624 Constraint 82 642 5.2053 6.5066 13.0132 155.2229 Constraint 439 681 4.9274 6.1593 12.3185 154.9442 Constraint 89 336 5.7761 7.2201 14.4401 154.8482 Constraint 471 551 4.1977 5.2472 10.4944 152.0020 Constraint 9 707 5.1455 6.4319 12.8638 151.6133 Constraint 262 716 5.6782 7.0977 14.1955 151.5582 Constraint 211 525 5.1704 6.4631 12.9261 150.7997 Constraint 138 650 6.2463 7.8079 15.6158 148.6601 Constraint 262 723 3.9494 4.9368 9.8735 146.9363 Constraint 447 673 4.2957 5.3696 10.7393 146.2427 Constraint 280 723 5.9549 7.4437 14.8873 145.5806 Constraint 459 658 4.9433 6.1791 12.3581 143.7541 Constraint 82 385 5.8447 7.3058 14.6117 139.3003 Constraint 422 723 6.0693 7.5866 15.1733 138.8518 Constraint 211 518 3.8161 4.7701 9.5403 138.5544 Constraint 113 619 6.0116 7.5145 15.0289 137.0105 Constraint 39 439 6.0865 7.6082 15.2164 136.7096 Constraint 161 228 5.9971 7.4964 14.9927 136.4274 Constraint 254 542 5.9515 7.4394 14.8788 135.6493 Constraint 478 551 6.1611 7.7014 15.4028 130.0997 Constraint 471 579 4.3128 5.3910 10.7819 130.0997 Constraint 32 374 5.4085 6.7606 13.5212 128.5929 Constraint 452 665 5.0530 6.3163 12.6326 128.4507 Constraint 106 608 5.7176 7.1470 14.2939 128.2330 Constraint 153 486 5.3037 6.6296 13.2593 128.1342 Constraint 146 556 5.2996 6.6245 13.2490 127.1928 Constraint 244 716 6.0031 7.5038 15.0077 124.3828 Constraint 237 486 4.8582 6.0728 12.1456 120.5252 Constraint 89 579 5.9533 7.4417 14.8833 118.2714 Constraint 82 374 5.1298 6.4123 12.8245 115.5300 Constraint 126 587 5.9084 7.3855 14.7710 115.3209 Constraint 237 551 5.5992 6.9990 13.9980 114.2248 Constraint 161 723 6.1300 7.6625 15.3249 112.4583 Constraint 23 707 5.2634 6.5792 13.1585 104.8235 Constraint 431 681 5.1123 6.3904 12.7809 100.6876 Constraint 439 692 4.1706 5.2132 10.4264 99.8770 Constraint 89 642 5.4296 6.7869 13.5739 98.5592 Constraint 452 673 6.1262 7.6577 15.3155 97.6320 Constraint 211 533 5.2025 6.5031 13.0062 95.6672 Constraint 237 439 5.6263 7.0328 14.0657 91.4196 Constraint 228 422 5.2922 6.6152 13.2305 91.4177 Constraint 414 707 5.8741 7.3426 14.6853 90.5617 Constraint 182 486 4.9748 6.2185 12.4370 88.5970 Constraint 106 587 5.0726 6.3407 12.6815 87.7305 Constraint 82 325 4.9685 6.2106 12.4212 87.7077 Constraint 486 556 6.1378 7.6723 15.3445 87.2799 Constraint 303 385 6.2212 7.7766 15.5531 85.1626 Constraint 3 707 4.7184 5.8980 11.7960 84.3693 Constraint 23 716 5.0570 6.3213 12.6426 83.7525 Constraint 237 673 4.5681 5.7101 11.4201 81.0539 Constraint 50 336 6.0621 7.5776 15.1552 80.3477 Constraint 58 126 4.9008 6.1261 12.2521 79.9152 Constraint 65 352 6.2570 7.8213 15.6425 79.7061 Constraint 471 556 6.0203 7.5254 15.0507 78.9777 Constraint 126 303 6.1814 7.7268 15.4536 77.8988 Constraint 202 518 6.0534 7.5668 15.1335 77.8100 Constraint 385 681 5.6033 7.0041 14.0083 75.5188 Constraint 58 673 5.7702 7.2128 14.4256 74.6050 Constraint 74 325 4.9167 6.1459 12.2918 73.7401 Constraint 182 262 5.9276 7.4095 14.8190 73.5176 Constraint 273 681 6.0815 7.6019 15.2039 73.2737 Constraint 431 507 6.3916 7.9894 15.9789 72.0074 Constraint 244 692 6.0858 7.6072 15.2144 71.5173 Constraint 106 319 4.1728 5.2160 10.4320 71.2544 Constraint 89 362 6.2312 7.7890 15.5781 70.5611 Constraint 106 303 5.1964 6.4955 12.9910 69.1043 Constraint 82 343 5.7618 7.2022 14.4045 69.1043 Constraint 106 352 5.6074 7.0092 14.0184 67.4015 Constraint 58 331 5.0578 6.3222 12.6444 67.3606 Constraint 471 563 6.1228 7.6535 15.3069 67.2039 Constraint 126 459 6.3053 7.8816 15.7633 67.2039 Constraint 89 459 5.3339 6.6673 13.3347 67.2039 Constraint 74 459 5.4688 6.8360 13.6719 67.2039 Constraint 65 459 5.3301 6.6627 13.3253 67.2039 Constraint 32 414 6.2491 7.8114 15.6228 66.0878 Constraint 244 478 5.1461 6.4326 12.8652 65.6229 Constraint 74 665 5.1756 6.4695 12.9391 65.1359 Constraint 211 507 4.9705 6.2132 12.4264 64.1725 Constraint 50 635 5.6918 7.1148 14.2295 63.3009 Constraint 126 452 6.1457 7.6821 15.3643 62.7556 Constraint 39 362 5.6710 7.0888 14.1775 61.3351 Constraint 58 681 4.8411 6.0514 12.1027 61.1080 Constraint 153 452 6.2309 7.7886 15.5773 60.9304 Constraint 138 393 6.1987 7.7483 15.4966 60.9304 Constraint 402 681 5.5407 6.9259 13.8517 60.7309 Constraint 65 619 5.6701 7.0876 14.1751 60.6395 Constraint 74 608 6.1082 7.6352 15.2704 58.9385 Constraint 39 635 6.1090 7.6363 15.2726 58.6737 Constraint 89 587 5.7971 7.2464 14.4927 56.6716 Constraint 478 673 6.3635 7.9544 15.9087 56.6640 Constraint 161 551 6.2103 7.7628 15.5257 56.0934 Constraint 32 650 5.9647 7.4559 14.9117 53.9354 Constraint 414 723 6.2992 7.8740 15.7481 53.5800 Constraint 32 642 5.1750 6.4688 12.9376 53.3437 Constraint 106 628 4.5455 5.6819 11.3638 51.6264 Constraint 89 650 4.8525 6.0657 12.1313 51.6264 Constraint 452 556 4.4006 5.5008 11.0016 50.7647 Constraint 106 598 5.8858 7.3573 14.7145 50.2689 Constraint 17 665 5.2082 6.5102 13.0204 50.1672 Constraint 452 542 5.4636 6.8295 13.6590 50.0685 Constraint 65 138 6.0966 7.6207 15.2415 49.5247 Constraint 439 716 5.6836 7.1044 14.2089 49.0245 Constraint 23 374 5.7764 7.2205 14.4411 48.7166 Constraint 126 642 4.7436 5.9295 11.8589 47.9506 Constraint 113 598 5.2164 6.5205 13.0409 47.6231 Constraint 74 452 5.7942 7.2427 14.4854 47.1719 Constraint 58 452 6.2991 7.8738 15.7477 47.1719 Constraint 39 447 6.1276 7.6594 15.3189 46.3684 Constraint 39 692 5.9601 7.4502 14.9004 44.3240 Constraint 98 310 5.1981 6.4977 12.9953 43.9506 Constraint 452 563 5.3592 6.6990 13.3980 43.9139 Constraint 9 723 4.5580 5.6976 11.3951 43.3901 Constraint 211 692 5.2692 6.5864 13.1729 43.2575 Constraint 237 692 5.1402 6.4253 12.8506 43.1849 Constraint 202 280 5.7120 7.1400 14.2800 42.8591 Constraint 32 716 5.8866 7.3583 14.7166 41.8198 Constraint 74 658 4.8937 6.1171 12.2342 41.2639 Constraint 58 447 6.2176 7.7720 15.5440 41.2208 Constraint 17 716 5.2465 6.5581 13.1162 40.9142 Constraint 9 237 5.7448 7.1810 14.3620 39.9188 Constraint 228 439 5.7079 7.1349 14.2698 39.5433 Constraint 452 533 5.1487 6.4359 12.8718 38.4668 Constraint 431 533 5.1456 6.4320 12.8640 38.4668 Constraint 551 635 6.3869 7.9836 15.9673 38.0093 Constraint 23 723 5.1925 6.4907 12.9814 37.8418 Constraint 9 716 5.4942 6.8677 13.7355 37.6112 Constraint 32 385 6.0214 7.5267 15.0535 37.6037 Constraint 273 723 6.3405 7.9256 15.8512 37.4085 Constraint 254 533 4.1771 5.2214 10.4429 37.1534 Constraint 228 673 4.7269 5.9087 11.8173 36.4944 Constraint 113 336 6.1417 7.6771 15.3543 36.4662 Constraint 17 237 5.2781 6.5976 13.1952 35.7638 Constraint 459 556 5.0011 6.2513 12.5027 35.6845 Constraint 385 673 5.4396 6.7995 13.5991 35.4902 Constraint 3 228 6.0915 7.6144 15.2288 35.3431 Constraint 32 707 4.3427 5.4284 10.8568 34.9664 Constraint 295 374 4.4108 5.5135 11.0270 34.9291 Constraint 39 533 5.1396 6.4245 12.8491 34.3945 Constraint 182 542 6.2272 7.7840 15.5680 33.5430 Constraint 17 658 4.8153 6.0192 12.0383 32.4777 Constraint 17 439 5.3643 6.7053 13.4107 32.4777 Constraint 273 374 4.8218 6.0272 12.0544 32.3997 Constraint 74 587 5.7309 7.1636 14.3271 31.6748 Constraint 289 393 5.1733 6.4666 12.9332 31.6409 Constraint 3 716 5.5680 6.9600 13.9200 31.4186 Constraint 9 211 4.5986 5.7483 11.4965 31.0830 Constraint 126 658 6.1938 7.7423 15.4845 30.5176 Constraint 459 665 5.4543 6.8178 13.6357 29.3082 Constraint 262 507 5.5069 6.8836 13.7672 29.0047 Constraint 9 422 5.7414 7.1768 14.3535 28.6879 Constraint 89 385 5.8298 7.2872 14.5744 28.6636 Constraint 3 723 4.3672 5.4589 10.9179 28.6470 Constraint 32 393 6.0678 7.5847 15.1694 28.4138 Constraint 563 635 5.7398 7.1747 14.3495 28.2439 Constraint 106 635 5.2460 6.5575 13.1150 26.7631 Constraint 89 374 5.0588 6.3234 12.6469 26.7631 Constraint 50 439 6.3231 7.9039 15.8078 26.7631 Constraint 9 228 5.9756 7.4695 14.9391 26.5074 Constraint 211 551 4.6353 5.7941 11.5882 26.0764 Constraint 572 642 4.7827 5.9784 11.9568 26.0535 Constraint 182 280 4.3992 5.4990 10.9981 25.4940 Constraint 182 273 5.2364 6.5455 13.0911 25.4940 Constraint 273 673 6.0815 7.6019 15.2038 25.2399 Constraint 3 658 6.0639 7.5799 15.1598 24.3583 Constraint 439 723 6.1011 7.6263 15.2527 24.2815 Constraint 50 414 5.9273 7.4091 14.8182 23.9520 Constraint 494 723 4.8780 6.0975 12.1951 23.9126 Constraint 138 374 4.7596 5.9495 11.8990 23.5636 Constraint 273 692 6.0819 7.6024 15.2048 23.3797 Constraint 280 393 4.8543 6.0679 12.1358 23.2398 Constraint 202 494 5.8670 7.3337 14.6674 22.3604 Constraint 220 692 4.9871 6.2338 12.4677 22.3524 Constraint 170 273 4.2615 5.3268 10.6537 22.3371 Constraint 17 374 5.6378 7.0473 14.0946 21.6205 Constraint 32 106 5.9597 7.4497 14.8994 21.5857 Constraint 153 244 5.2877 6.6096 13.2192 21.3797 Constraint 32 563 6.1121 7.6401 15.2802 21.1658 Constraint 452 525 6.0333 7.5416 15.0831 20.9051 Constraint 126 262 5.3426 6.6782 13.3565 20.8474 Constraint 642 729 4.1359 5.1699 10.3398 20.6341 Constraint 182 422 4.3807 5.4758 10.9517 20.1383 Constraint 23 447 5.6753 7.0942 14.1884 19.8176 Constraint 262 525 5.8657 7.3321 14.6642 19.5744 Constraint 39 146 4.6510 5.8138 11.6276 19.4861 Constraint 658 729 3.9625 4.9531 9.9063 19.0740 Constraint 650 729 5.4977 6.8721 13.7442 18.9546 Constraint 3 673 5.8399 7.2998 14.5996 18.5380 Constraint 98 598 4.9120 6.1400 12.2801 18.5201 Constraint 9 533 4.9961 6.2452 12.4903 18.5201 Constraint 9 439 5.6180 7.0225 14.0450 18.2106 Constraint 39 138 5.1815 6.4769 12.9539 18.1727 Constraint 3 211 4.8728 6.0910 12.1820 17.7767 Constraint 447 692 6.0870 7.6088 15.2176 17.6895 Constraint 39 723 6.2556 7.8195 15.6391 17.6895 Constraint 9 220 5.6650 7.0813 14.1626 17.6716 Constraint 9 202 5.1876 6.4845 12.9691 17.6716 Constraint 431 572 5.9550 7.4438 14.8875 17.1989 Constraint 447 572 4.1917 5.2396 10.4793 17.0992 Constraint 220 507 4.7741 5.9676 11.9352 17.0020 Constraint 385 658 6.0376 7.5470 15.0940 16.8242 Constraint 393 673 4.6268 5.7835 11.5670 16.8010 Constraint 374 658 5.8081 7.2601 14.5202 16.8010 Constraint 194 422 5.3745 6.7182 13.4364 16.7096 Constraint 23 729 4.9975 6.2468 12.4937 16.5753 Constraint 106 579 5.5761 6.9701 13.9402 16.3697 Constraint 220 551 5.3679 6.7099 13.4198 16.3178 Constraint 220 494 4.4286 5.5358 11.0716 16.3178 Constraint 220 486 4.4778 5.5972 11.1945 16.3178 Constraint 194 273 5.1485 6.4356 12.8713 16.2922 Constraint 303 402 4.2343 5.2928 10.5857 16.1892 Constraint 161 237 5.0011 6.2513 12.5026 16.0630 Constraint 478 716 5.8630 7.3288 14.6576 15.9680 Constraint 138 254 4.9193 6.1491 12.2983 15.5467 Constraint 113 556 5.9446 7.4307 14.8614 15.5373 Constraint 336 665 4.8716 6.0895 12.1790 15.3953 Constraint 211 681 6.2080 7.7600 15.5200 15.2037 Constraint 211 673 3.5369 4.4211 8.8422 15.2037 Constraint 439 628 5.5816 6.9771 13.9541 15.1285 Constraint 439 729 6.2943 7.8679 15.7358 15.1100 Constraint 50 126 5.5040 6.8800 13.7599 14.7138 Constraint 244 681 6.1874 7.7343 15.4686 14.6569 Constraint 471 598 6.0194 7.5242 15.0484 14.5468 Constraint 362 658 5.0785 6.3481 12.6962 14.3295 Constraint 331 673 4.6759 5.8449 11.6898 14.2542 Constraint 331 665 4.3030 5.3787 10.7574 14.2542 Constraint 556 635 5.1503 6.4378 12.8757 14.1690 Constraint 65 563 6.0738 7.5922 15.1844 14.0684 Constraint 211 542 5.9496 7.4370 14.8741 13.9413 Constraint 170 303 5.3082 6.6353 13.2706 13.9016 Constraint 89 310 5.1642 6.4553 12.9106 13.7585 Constraint 551 681 5.7121 7.1402 14.2803 13.5701 Constraint 331 692 4.2283 5.2853 10.5707 13.5701 Constraint 331 681 4.6611 5.8263 11.6526 13.5701 Constraint 362 665 3.7429 4.6786 9.3572 13.5331 Constraint 17 211 5.6479 7.0599 14.1198 13.4114 Constraint 563 658 5.7957 7.2447 14.4893 13.3033 Constraint 563 650 4.0827 5.1033 10.2067 13.3033 Constraint 563 642 5.4097 6.7621 13.5242 13.3033 Constraint 556 658 4.3813 5.4766 10.9533 13.3033 Constraint 556 650 6.2439 7.8049 15.6098 13.3033 Constraint 556 642 4.5156 5.6445 11.2889 13.3033 Constraint 551 658 5.3297 6.6621 13.3241 13.3033 Constraint 542 658 4.5051 5.6314 11.2627 13.3033 Constraint 459 551 5.4578 6.8223 13.6446 13.3033 Constraint 459 525 5.9250 7.4063 14.8125 13.3033 Constraint 447 563 6.1444 7.6806 15.3611 13.3033 Constraint 439 587 4.4303 5.5378 11.0757 13.3033 Constraint 439 579 5.0218 6.2772 12.5544 13.3033 Constraint 439 572 3.8777 4.8471 9.6943 13.3033 Constraint 431 563 4.5412 5.6765 11.3529 13.3033 Constraint 422 587 3.7373 4.6716 9.3432 13.3033 Constraint 422 579 4.9458 6.1822 12.3644 13.3033 Constraint 414 598 4.4352 5.5440 11.0881 13.3033 Constraint 414 587 5.5242 6.9052 13.8104 13.3033 Constraint 414 579 3.4898 4.3622 8.7244 13.3033 Constraint 393 598 6.0373 7.5466 15.0932 13.3033 Constraint 385 579 5.6814 7.1017 14.2034 13.3033 Constraint 385 563 5.6692 7.0865 14.1729 13.3033 Constraint 362 563 6.1609 7.7011 15.4021 13.3033 Constraint 273 579 6.1992 7.7490 15.4980 13.3033 Constraint 494 729 4.8434 6.0542 12.1084 13.2848 Constraint 182 692 4.9987 6.2483 12.4966 13.2846 Constraint 642 716 5.6356 7.0445 14.0889 13.2351 Constraint 74 533 5.2147 6.5184 13.0368 13.2286 Constraint 170 325 5.6178 7.0222 14.0444 13.1892 Constraint 39 126 5.6328 7.0410 14.0821 12.7162 Constraint 82 658 4.8503 6.0629 12.1257 12.4530 Constraint 336 658 6.0440 7.5550 15.1101 12.4081 Constraint 161 295 3.5629 4.4536 8.9073 12.2365 Constraint 211 556 5.1950 6.4938 12.9876 12.1351 Constraint 17 729 5.5163 6.8953 13.7907 12.1058 Constraint 153 228 6.0993 7.6242 15.2484 12.0654 Constraint 39 729 4.7629 5.9536 11.9072 12.0259 Constraint 32 729 6.3106 7.8882 15.7764 12.0259 Constraint 58 352 6.0978 7.6222 15.2445 11.9230 Constraint 146 254 5.8130 7.2662 14.5325 11.8963 Constraint 82 579 6.3750 7.9688 15.9375 11.7930 Constraint 65 452 5.5447 6.9309 13.8617 11.7930 Constraint 50 452 6.0576 7.5720 15.1439 11.7930 Constraint 50 431 6.3972 7.9965 15.9930 11.7930 Constraint 295 414 6.1608 7.7010 15.4020 11.7568 Constraint 362 673 6.0666 7.5832 15.1664 11.7449 Constraint 352 665 6.2859 7.8573 15.7147 11.7449 Constraint 325 692 6.1305 7.6631 15.3262 11.7449 Constraint 32 138 4.3421 5.4277 10.8553 11.7449 Constraint 422 707 4.7555 5.9444 11.8888 11.5962 Constraint 161 422 5.9509 7.4386 14.8773 11.4227 Constraint 138 262 5.4327 6.7908 13.5817 11.4227 Constraint 563 665 4.6849 5.8562 11.7123 11.4028 Constraint 551 673 6.1028 7.6285 15.2570 11.4028 Constraint 551 665 3.8418 4.8022 9.6045 11.4028 Constraint 542 681 6.3219 7.9023 15.8047 11.4028 Constraint 542 673 3.8656 4.8320 9.6640 11.4028 Constraint 542 665 5.5911 6.9889 13.9778 11.4028 Constraint 533 681 5.9480 7.4350 14.8699 11.4028 Constraint 533 673 5.3476 6.6846 13.3691 11.4028 Constraint 525 681 6.1507 7.6884 15.3768 11.4028 Constraint 182 431 5.9445 7.4306 14.8612 11.3655 Constraint 182 414 5.5469 6.9337 13.8673 11.3655 Constraint 106 273 4.8446 6.0557 12.1114 11.3450 Constraint 98 319 5.9374 7.4218 14.8435 11.2862 Constraint 138 551 4.9126 6.1408 12.2816 11.1684 Constraint 447 681 4.0554 5.0692 10.1384 10.8106 Constraint 579 658 5.7541 7.1927 14.3853 10.5829 Constraint 146 525 5.4616 6.8270 13.6540 10.5829 Constraint 146 262 5.0601 6.3251 12.6502 10.5829 Constraint 138 556 5.4503 6.8129 13.6259 10.5829 Constraint 138 525 4.7439 5.9299 11.8599 10.5829 Constraint 126 431 6.3195 7.8994 15.7988 10.5829 Constraint 126 295 5.0575 6.3219 12.6438 10.5829 Constraint 126 273 4.5093 5.6366 11.2732 10.5829 Constraint 98 587 4.9421 6.1776 12.3552 10.5829 Constraint 65 587 5.3209 6.6511 13.3021 10.5829 Constraint 39 563 5.9057 7.3821 14.7642 10.5829 Constraint 32 533 5.2173 6.5216 13.0432 10.5829 Constraint 23 563 6.1355 7.6694 15.3388 10.5829 Constraint 23 98 6.1221 7.6526 15.3052 10.5829 Constraint 9 563 6.0906 7.6133 15.2265 10.5829 Constraint 50 628 4.9231 6.1539 12.3077 10.5246 Constraint 202 295 5.9214 7.4017 14.8035 10.3953 Constraint 202 289 3.5316 4.4145 8.8291 10.3953 Constraint 202 273 5.7069 7.1337 14.2673 10.3953 Constraint 194 336 3.2576 4.0720 8.1439 10.3953 Constraint 194 295 3.3386 4.1733 8.3466 10.3953 Constraint 194 289 5.1317 6.4146 12.8293 10.3953 Constraint 182 336 4.5139 5.6423 11.2847 10.3953 Constraint 9 729 5.4759 6.8448 13.6896 10.2749 Constraint 182 289 3.3600 4.2000 8.4000 10.1006 Constraint 170 385 5.0712 6.3390 12.6781 10.1006 Constraint 170 336 3.5138 4.3923 8.7845 10.1006 Constraint 170 295 3.6487 4.5608 9.1216 10.1006 Constraint 170 289 4.9282 6.1602 12.3204 10.1006 Constraint 74 146 4.3747 5.4683 10.9366 10.0056 Constraint 194 673 4.7604 5.9505 11.9009 9.9437 Constraint 39 336 3.7288 4.6610 9.3221 9.9088 Constraint 39 325 6.1857 7.7321 15.4643 9.9088 Constraint 39 303 6.1791 7.7239 15.4478 9.9088 Constraint 39 295 3.9841 4.9802 9.9604 9.9088 Constraint 39 289 5.5535 6.9419 13.8837 9.9088 Constraint 39 280 6.2238 7.7798 15.5595 9.9088 Constraint 39 273 4.1723 5.2153 10.4306 9.9088 Constraint 32 352 6.1580 7.6975 15.3950 9.9088 Constraint 32 343 4.2377 5.2971 10.5943 9.9088 Constraint 32 336 2.5825 3.2281 6.4562 9.9088 Constraint 32 331 3.8754 4.8442 9.6884 9.9088 Constraint 32 325 1.8085 2.2606 4.5212 9.9088 Constraint 32 319 6.3342 7.9178 15.8356 9.9088 Constraint 32 303 4.0337 5.0422 10.0843 9.9088 Constraint 32 295 4.7021 5.8776 11.7552 9.9088 Constraint 23 635 5.0700 6.3375 12.6750 9.9088 Constraint 23 579 5.7888 7.2360 14.4719 9.9088 Constraint 23 336 4.4793 5.5992 11.1983 9.9088 Constraint 23 331 4.2210 5.2762 10.5524 9.9088 Constraint 23 325 5.1957 6.4946 12.9892 9.9088 Constraint 17 325 5.1221 6.4027 12.8053 9.9088 Constraint 17 303 6.2277 7.7846 15.5692 9.9088 Constraint 9 665 5.4907 6.8634 13.7269 9.7854 Constraint 9 658 4.5304 5.6630 11.3261 9.7854 Constraint 385 707 6.3984 7.9980 15.9960 9.6573 Constraint 161 336 3.7760 4.7200 9.4399 9.6440 Constraint 161 303 5.6226 7.0283 14.0566 9.5787 Constraint 211 494 4.9755 6.2194 12.4388 9.5041 Constraint 126 254 5.5523 6.9404 13.8808 9.4445 Constraint 113 262 5.1068 6.3834 12.7669 9.4445 Constraint 194 303 5.2054 6.5067 13.0135 9.3691 Constraint 113 628 5.6623 7.0778 14.1557 9.3193 Constraint 153 295 5.3671 6.7089 13.4177 9.2703 Constraint 331 658 5.9098 7.3872 14.7745 9.1094 Constraint 211 431 6.0133 7.5166 15.0332 9.0819 Constraint 194 385 4.5655 5.7068 11.4136 9.0819 Constraint 182 331 4.2621 5.3277 10.6554 9.0819 Constraint 182 325 6.0552 7.5690 15.1380 9.0819 Constraint 170 331 5.7436 7.1795 14.3589 9.0819 Constraint 9 393 6.2442 7.8052 15.6104 9.0009 Constraint 3 220 5.6419 7.0523 14.1046 8.9409 Constraint 153 237 6.3354 7.9193 15.8386 8.8963 Constraint 431 692 4.4494 5.5618 11.1236 8.8451 Constraint 280 692 5.5040 6.8799 13.7599 8.7448 Constraint 650 723 5.6429 7.0537 14.1074 8.6282 Constraint 642 723 5.6634 7.0793 14.1586 8.6282 Constraint 385 723 5.7086 7.1358 14.2716 8.6282 Constraint 362 723 4.6191 5.7739 11.5478 8.6282 Constraint 113 254 4.9725 6.2156 12.4312 8.6048 Constraint 17 723 4.7693 5.9616 11.9232 8.4876 Constraint 3 729 4.7829 5.9786 11.9571 8.4876 Constraint 452 681 6.0962 7.6203 15.2405 8.4252 Constraint 385 692 4.4076 5.5095 11.0190 8.4252 Constraint 336 673 5.8149 7.2686 14.5372 8.4252 Constraint 65 673 4.8713 6.0892 12.1783 8.4252 Constraint 50 692 6.0680 7.5851 15.1701 8.4252 Constraint 194 325 5.3635 6.7044 13.4087 8.3977 Constraint 58 608 5.7997 7.2496 14.4992 8.2832 Constraint 126 551 6.0380 7.5474 15.0949 8.2226 Constraint 459 587 5.5884 6.9855 13.9710 8.2122 Constraint 182 303 5.8147 7.2684 14.5368 8.1348 Constraint 170 343 5.9456 7.4320 14.8640 8.1348 Constraint 194 343 6.1066 7.6333 15.2665 8.0557 Constraint 182 635 5.0437 6.3046 12.6091 8.0557 Constraint 182 579 4.8075 6.0094 12.0187 8.0557 Constraint 170 587 5.4197 6.7747 13.5493 8.0557 Constraint 182 295 6.2938 7.8672 15.7344 7.9787 Constraint 98 336 5.1240 6.4050 12.8099 7.8706 Constraint 65 146 6.1126 7.6407 15.2815 7.7631 Constraint 194 533 5.3986 6.7482 13.4964 7.7384 Constraint 106 280 4.0417 5.0521 10.1043 7.6946 Constraint 161 385 5.1609 6.4511 12.9022 7.6782 Constraint 533 635 6.3588 7.9485 15.8970 7.6019 Constraint 194 692 5.5703 6.9628 13.9256 7.6019 Constraint 194 439 5.7604 7.2005 14.4010 7.6019 Constraint 182 681 6.1466 7.6833 15.3666 7.6019 Constraint 182 673 3.4937 4.3671 8.7343 7.6019 Constraint 32 126 4.9136 6.1420 12.2840 7.6019 Constraint 23 138 4.0664 5.0830 10.1660 7.6019 Constraint 237 729 5.1517 6.4396 12.8792 7.3886 Constraint 170 729 3.7879 4.7348 9.4697 7.3886 Constraint 254 692 6.3027 7.8784 15.7567 6.9174 Constraint 58 138 5.0986 6.3732 12.7465 6.9015 Constraint 50 146 5.1815 6.4769 12.9538 6.8670 Constraint 89 153 4.2713 5.3391 10.6782 6.5412 Constraint 459 542 5.5788 6.9735 13.9469 6.5018 Constraint 452 518 4.4038 5.5048 11.0096 6.5018 Constraint 431 518 6.1682 7.7102 15.4205 6.5018 Constraint 126 244 6.0640 7.5800 15.1599 6.3906 Constraint 106 262 4.8895 6.1118 12.2237 6.3906 Constraint 106 254 3.8473 4.8092 9.6183 6.3906 Constraint 58 254 4.6344 5.7931 11.5861 6.2678 Constraint 106 228 5.7984 7.2481 14.4961 6.2350 Constraint 106 194 5.7577 7.1972 14.3943 6.2350 Constraint 161 331 5.7690 7.2113 14.4225 5.9936 Constraint 153 303 4.6027 5.7534 11.5068 5.9936 Constraint 138 587 5.2670 6.5837 13.1674 5.9936 Constraint 9 374 5.4647 6.8309 13.6618 5.8965 Constraint 280 716 5.2555 6.5693 13.1386 5.8555 Constraint 161 716 3.9644 4.9555 9.9109 5.8555 Constraint 74 579 5.7251 7.1564 14.3128 5.7961 Constraint 113 280 4.9402 6.1753 12.3506 5.7942 Constraint 106 289 3.7313 4.6642 9.3283 5.7942 Constraint 228 587 4.5384 5.6729 11.3459 5.7014 Constraint 211 608 4.8047 6.0059 12.0118 5.7014 Constraint 211 598 6.3065 7.8831 15.7662 5.7014 Constraint 211 587 3.4657 4.3322 8.6643 5.7014 Constraint 82 153 5.5062 6.8828 13.7655 5.7014 Constraint 82 146 4.5820 5.7275 11.4550 5.7014 Constraint 58 182 5.6643 7.0804 14.1609 5.7014 Constraint 58 170 5.3896 6.7370 13.4740 5.7014 Constraint 23 146 3.9064 4.8830 9.7660 5.7014 Constraint 3 138 6.1852 7.7315 15.4631 5.7014 Constraint 635 729 6.0695 7.5869 15.1737 5.6122 Constraint 58 146 4.3068 5.3835 10.7670 5.5536 Constraint 106 431 5.6446 7.0557 14.1114 5.5508 Constraint 486 579 5.3442 6.6803 13.3605 5.5223 Constraint 459 563 6.3713 7.9642 15.9283 5.4756 Constraint 138 658 6.2687 7.8359 15.6718 5.2915 Constraint 153 289 5.0258 6.2823 12.5645 5.2425 Constraint 138 310 4.8474 6.0593 12.1185 5.2425 Constraint 254 572 5.7862 7.2328 14.4656 5.1140 Constraint 628 729 5.1659 6.4574 12.9147 5.0267 Constraint 126 525 4.8390 6.0488 12.0975 4.9544 Constraint 113 551 4.9733 6.2166 12.4332 4.9544 Constraint 113 525 5.5705 6.9632 13.9263 4.9544 Constraint 113 431 5.4932 6.8665 13.7330 4.9544 Constraint 113 273 5.0234 6.2792 12.5585 4.9544 Constraint 106 295 6.1812 7.7265 15.4530 4.9544 Constraint 82 551 4.2173 5.2716 10.5431 4.9544 Constraint 82 542 5.3469 6.6837 13.3673 4.9544 Constraint 82 533 6.2192 7.7740 15.5479 4.9544 Constraint 82 525 3.1366 3.9207 7.8415 4.9544 Constraint 82 518 3.8413 4.8017 9.6033 4.9544 Constraint 82 507 4.1204 5.1504 10.3009 4.9544 Constraint 82 486 6.0077 7.5096 15.0192 4.9544 Constraint 82 254 3.9348 4.9185 9.8370 4.9544 Constraint 74 525 4.8390 6.0488 12.0975 4.9544 Constraint 74 262 4.9279 6.1599 12.3198 4.9544 Constraint 74 254 5.1304 6.4130 12.8259 4.9544 Constraint 65 525 6.0230 7.5288 15.0576 4.9544 Constraint 65 280 3.7233 4.6541 9.3082 4.9544 Constraint 65 273 6.2944 7.8680 15.7361 4.9544 Constraint 65 262 3.9447 4.9308 9.8617 4.9544 Constraint 65 254 6.0881 7.6101 15.2202 4.9544 Constraint 58 579 6.1542 7.6927 15.3854 4.9544 Constraint 58 556 5.7769 7.2211 14.4422 4.9544 Constraint 58 551 4.9739 6.2173 12.4346 4.9544 Constraint 58 525 5.6333 7.0416 14.0833 4.9544 Constraint 58 431 5.3761 6.7201 13.4401 4.9544 Constraint 58 280 5.1125 6.3906 12.7813 4.9544 Constraint 58 273 4.9190 6.1487 12.2974 4.9544 Constraint 58 262 5.1682 6.4602 12.9204 4.9544 Constraint 50 295 6.3819 7.9774 15.9549 4.9544 Constraint 50 289 3.8310 4.7887 9.5775 4.9544 Constraint 50 280 3.7024 4.6280 9.2560 4.9544 Constraint 50 273 5.9637 7.4546 14.9093 4.9544 Constraint 39 113 5.0807 6.3509 12.7017 4.9544 Constraint 98 194 4.7891 5.9863 11.9727 4.6766 Constraint 89 228 3.7203 4.6504 9.3008 4.6766 Constraint 89 220 5.6816 7.1019 14.2039 4.6766 Constraint 82 228 6.1387 7.6734 15.3468 4.6766 Constraint 82 220 5.4236 6.7795 13.5590 4.6766 Constraint 447 716 5.4007 6.7508 13.5017 4.6187 Constraint 146 336 4.1830 5.2288 10.4575 4.6133 Constraint 146 331 4.0316 5.0395 10.0789 4.6133 Constraint 146 325 5.4203 6.7753 13.5506 4.6133 Constraint 310 402 4.7892 5.9865 11.9729 4.5583 Constraint 310 393 5.2265 6.5331 13.0662 4.5583 Constraint 310 385 4.1335 5.1669 10.3338 4.5583 Constraint 289 665 5.6485 7.0607 14.1214 4.5583 Constraint 289 431 5.0601 6.3251 12.6503 4.5583 Constraint 289 422 6.3580 7.9475 15.8951 4.5583 Constraint 289 414 3.4893 4.3616 8.7232 4.5583 Constraint 289 385 4.1634 5.2043 10.4086 4.5583 Constraint 280 431 5.5161 6.8951 13.7903 4.5583 Constraint 280 422 4.5765 5.7206 11.4412 4.5583 Constraint 280 414 5.5412 6.9265 13.8530 4.5583 Constraint 273 551 3.7323 4.6654 9.3309 4.5583 Constraint 273 525 5.7075 7.1344 14.2688 4.5583 Constraint 273 507 5.2330 6.5412 13.0824 4.5583 Constraint 273 486 3.4844 4.3555 8.7111 4.5583 Constraint 262 486 6.1864 7.7330 15.4661 4.5583 Constraint 138 352 3.9882 4.9853 9.9706 4.5583 Constraint 138 319 5.8670 7.3338 14.6676 4.5583 Constraint 126 352 4.7126 5.8907 11.7814 4.5583 Constraint 126 343 5.1675 6.4593 12.9187 4.5583 Constraint 113 507 5.2128 6.5160 13.0321 4.4901 Constraint 106 507 4.9145 6.1432 12.2863 4.4901 Constraint 23 220 5.7949 7.2436 14.4873 4.4705 Constraint 23 211 3.3881 4.2351 8.4703 4.4705 Constraint 113 202 5.3524 6.6905 13.3810 4.3345 Constraint 113 194 4.7413 5.9266 11.8533 4.3345 Constraint 106 220 5.8002 7.2502 14.5005 4.3345 Constraint 106 211 3.4155 4.2694 8.5387 4.3345 Constraint 106 202 4.1910 5.2388 10.4776 4.3345 Constraint 98 228 6.3417 7.9271 15.8543 4.3345 Constraint 98 220 4.4965 5.6206 11.2412 4.3345 Constraint 98 211 6.0325 7.5406 15.0813 4.3345 Constraint 89 244 3.5263 4.4078 8.8157 4.3345 Constraint 89 237 5.0845 6.3556 12.7112 4.3345 Constraint 82 244 6.1090 7.6362 15.2724 4.3345 Constraint 82 237 5.7196 7.1495 14.2991 4.3345 Constraint 138 202 4.3694 5.4618 10.9235 4.2402 Constraint 50 138 5.2801 6.6001 13.2002 4.2402 Constraint 414 716 4.3734 5.4667 10.9335 4.2126 Constraint 194 608 5.4669 6.8336 13.6671 4.1430 Constraint 82 182 6.2812 7.8515 15.7029 4.1430 Constraint 82 161 4.6165 5.7706 11.5412 4.1430 Constraint 65 182 4.6479 5.8099 11.6198 4.1430 Constraint 39 182 5.4925 6.8656 13.7313 4.1430 Constraint 32 146 5.8352 7.2940 14.5881 4.1430 Constraint 220 673 6.0714 7.5893 15.1785 4.0982 Constraint 273 650 6.2876 7.8595 15.7191 4.0505 Constraint 98 343 5.5591 6.9489 13.8979 4.0505 Constraint 478 665 6.3387 7.9234 15.8467 4.0474 Constraint 170 579 5.7351 7.1689 14.3378 4.0278 Constraint 161 343 6.2648 7.8310 15.6621 4.0278 Constraint 161 325 5.4891 6.8614 13.7229 4.0278 Constraint 153 343 5.3300 6.6625 13.3249 4.0278 Constraint 153 336 3.5962 4.4952 8.9904 4.0278 Constraint 153 331 3.0771 3.8464 7.6928 4.0278 Constraint 153 325 1.9026 2.3782 4.7564 4.0278 Constraint 146 635 5.0617 6.3271 12.6541 4.0278 Constraint 146 579 5.0322 6.2903 12.5806 4.0278 Constraint 113 635 6.3963 7.9953 15.9907 4.0278 Constraint 106 362 6.2770 7.8462 15.6924 4.0278 Constraint 98 650 5.8188 7.2734 14.5469 4.0278 Constraint 98 642 6.2468 7.8085 15.6170 4.0278 Constraint 98 385 5.2948 6.6185 13.2369 4.0278 Constraint 98 362 3.3941 4.2426 8.4853 4.0278 Constraint 82 665 4.8668 6.0835 12.1671 4.0278 Constraint 82 414 6.2731 7.8414 15.6827 4.0278 Constraint 65 681 5.0515 6.3144 12.6288 4.0278 Constraint 65 414 6.1538 7.6923 15.3846 4.0278 Constraint 58 439 5.9261 7.4077 14.8153 4.0278 Constraint 202 533 6.2988 7.8735 15.7469 3.9316 Constraint 202 556 6.2656 7.8320 15.6641 3.9310 Constraint 202 551 5.4117 6.7646 13.5292 3.9310 Constraint 202 486 3.8736 4.8420 9.6840 3.9310 Constraint 331 628 5.5874 6.9843 13.9686 3.8956 Constraint 331 619 6.3495 7.9369 15.8738 3.8956 Constraint 262 673 5.7314 7.1642 14.3284 3.8956 Constraint 262 665 6.0000 7.4999 14.9999 3.8956 Constraint 126 374 6.0631 7.5788 15.1577 3.8428 Constraint 126 202 4.5515 5.6893 11.3786 3.8009 Constraint 106 244 6.3773 7.9716 15.9433 3.8009 Constraint 74 182 5.8512 7.3140 14.6280 3.8009 Constraint 74 170 3.3344 4.1680 8.3359 3.8009 Constraint 65 170 5.9258 7.4072 14.8144 3.8009 Constraint 39 194 4.8150 6.0188 12.0376 3.8009 Constraint 9 98 4.5335 5.6669 11.3337 3.8009 Constraint 9 82 4.0551 5.0688 10.1377 3.8009 Constraint 3 98 5.3334 6.6668 13.3335 3.8009 Constraint 3 89 4.5686 5.7108 11.4215 3.8009 Constraint 3 82 6.0236 7.5295 15.0589 3.8009 Constraint 3 74 4.7686 5.9607 11.9215 3.8009 Constraint 161 431 6.1489 7.6862 15.3723 3.6504 Constraint 39 161 4.7334 5.9168 11.8336 3.5560 Constraint 39 153 5.0863 6.3579 12.7158 3.5560 Constraint 161 507 5.1855 6.4819 12.9638 3.2139 Constraint 126 211 5.3181 6.6477 13.2953 3.2139 Constraint 74 161 4.2733 5.3417 10.6834 3.2139 Constraint 494 692 6.1949 7.7437 15.4873 2.9507 Constraint 494 673 5.7323 7.1654 14.3309 2.9507 Constraint 362 729 6.2162 7.7703 15.5405 2.9273 Constraint 74 237 5.5241 6.9051 13.8102 2.9267 Constraint 587 692 5.2326 6.5408 13.0815 2.8514 Constraint 98 289 3.3666 4.2082 8.4165 2.7402 Constraint 98 280 4.2015 5.2519 10.5037 2.7402 Constraint 211 486 6.1240 7.6550 15.3100 2.6752 Constraint 58 533 4.9455 6.1818 12.3637 2.6457 Constraint 39 525 6.1984 7.7480 15.4959 2.6457 Constraint 39 518 3.7772 4.7215 9.4430 2.6457 Constraint 182 563 3.9213 4.9017 9.8033 2.3397 Constraint 170 563 5.7694 7.2118 14.4236 2.3397 Constraint 161 572 4.4654 5.5817 11.1634 2.3397 Constraint 228 692 4.7859 5.9824 11.9649 2.3204 Constraint 106 551 5.1238 6.4047 12.8094 2.2426 Constraint 74 228 5.8277 7.2846 14.5693 2.2426 Constraint 58 161 6.0066 7.5082 15.0165 2.2426 Constraint 32 153 4.1074 5.1343 10.2685 2.2426 Constraint 608 681 3.6840 4.6050 9.2100 2.1673 Constraint 608 673 5.4095 6.7618 13.5237 2.1673 Constraint 598 681 5.6936 7.1170 14.2341 2.1673 Constraint 598 673 5.1739 6.4674 12.9348 2.1673 Constraint 587 681 4.7256 5.9069 11.8139 2.1673 Constraint 579 681 5.6498 7.0623 14.1245 2.1673 Constraint 572 681 3.9563 4.9454 9.8907 2.1673 Constraint 556 707 5.8078 7.2598 14.5196 2.1673 Constraint 82 170 4.8574 6.0718 12.1436 2.1673 Constraint 153 507 3.6218 4.5272 9.0544 1.9976 Constraint 161 635 3.9323 4.9154 9.8308 1.9658 Constraint 161 608 5.5585 6.9482 13.8963 1.9658 Constraint 161 587 5.6243 7.0304 14.0608 1.9658 Constraint 161 579 4.1718 5.2147 10.4294 1.9658 Constraint 153 587 5.5048 6.8810 13.7619 1.9658 Constraint 146 587 5.5940 6.9925 13.9849 1.9658 Constraint 32 422 5.0841 6.3551 12.7101 1.9658 Constraint 23 414 5.7817 7.2271 14.4541 1.9658 Constraint 23 393 6.0543 7.5679 15.1357 1.9658 Constraint 374 673 5.9939 7.4923 14.9846 1.9655 Constraint 182 402 5.5171 6.8964 13.7927 1.9655 Constraint 170 402 4.8822 6.1028 12.2056 1.9655 Constraint 170 393 6.2232 7.7791 15.5581 1.9655 Constraint 237 303 6.0840 7.6050 15.2099 1.9005 Constraint 228 681 6.1252 7.6565 15.3131 1.9005 Constraint 161 518 6.2764 7.8455 15.6911 1.9005 Constraint 153 310 5.9262 7.4077 14.8154 1.9005 Constraint 113 244 5.8439 7.3049 14.6097 1.9005 Constraint 106 525 3.7524 4.6905 9.3810 1.9005 Constraint 106 182 4.9339 6.1674 12.3348 1.9005 Constraint 98 295 6.2459 7.8074 15.6148 1.9005 Constraint 98 273 5.8653 7.3317 14.6634 1.9005 Constraint 89 303 5.2504 6.5629 13.1259 1.9005 Constraint 89 295 3.9022 4.8777 9.7555 1.9005 Constraint 89 289 5.2690 6.5863 13.1726 1.9005 Constraint 89 280 6.3821 7.9776 15.9551 1.9005 Constraint 89 273 4.7270 5.9088 11.8176 1.9005 Constraint 82 319 6.0741 7.5927 15.1854 1.9005 Constraint 82 303 2.9229 3.6536 7.3073 1.9005 Constraint 82 295 5.7006 7.1258 14.2516 1.9005 Constraint 74 153 3.1177 3.8972 7.7943 1.9005 Constraint 65 161 5.9612 7.4515 14.9030 1.9005 Constraint 58 244 4.2220 5.2775 10.5550 1.9005 Constraint 58 211 4.3375 5.4218 10.8437 1.9005 Constraint 58 194 6.1484 7.6855 15.3710 1.9005 Constraint 50 182 5.5491 6.9363 13.8726 1.9005 Constraint 39 202 5.1717 6.4646 12.9293 1.9005 Constraint 32 194 3.6458 4.5572 9.1144 1.9005 Constraint 32 182 4.8417 6.0521 12.1042 1.9005 Constraint 23 202 3.9041 4.8802 9.7603 1.9005 Constraint 23 194 4.0639 5.0799 10.1597 1.9005 Constraint 17 182 5.2139 6.5174 13.0348 1.9005 Constraint 3 194 6.1330 7.6662 15.3324 1.9005 Constraint 211 295 5.7147 7.1434 14.2867 1.7104 Constraint 507 587 5.4340 6.7925 13.5850 1.6795 Constraint 507 579 4.6935 5.8669 11.7339 1.6795 Constraint 494 572 4.3542 5.4427 10.8855 1.6795 Constraint 486 608 5.7258 7.1572 14.3144 1.6795 Constraint 220 422 4.9265 6.1581 12.3162 1.6792 Constraint 402 707 5.6524 7.0655 14.1310 1.6265 Constraint 343 650 6.3506 7.9382 15.8765 1.3134 Constraint 289 374 5.3269 6.6586 13.3172 1.3134 Constraint 289 362 5.0414 6.3018 12.6035 1.3134 Constraint 280 374 3.6508 4.5635 9.1270 1.3134 Constraint 273 343 5.6581 7.0726 14.1452 1.3134 Constraint 262 374 6.2932 7.8666 15.7331 1.3134 Constraint 202 303 6.1154 7.6443 15.2885 1.3134 Constraint 138 211 6.0243 7.5304 15.0607 1.3134 Constraint 74 211 5.0113 6.2641 12.5283 1.3134 Constraint 74 194 6.1438 7.6798 15.3596 1.3134 Constraint 50 170 6.2120 7.7650 15.5299 1.3134 Constraint 32 161 6.3568 7.9460 15.8921 1.3134 Constraint 23 170 6.2415 7.8019 15.6038 1.3134 Constraint 211 289 6.2403 7.8003 15.6007 1.0263 Constraint 202 507 5.6719 7.0899 14.1798 1.0263 Constraint 194 542 6.3128 7.8910 15.7820 1.0263 Constraint 194 431 6.0920 7.6149 15.2299 1.0263 Constraint 194 310 6.2114 7.7642 15.5285 1.0263 Constraint 182 650 6.3528 7.9410 15.8819 1.0263 Constraint 170 608 6.0180 7.5225 15.0449 1.0263 Constraint 170 572 6.3732 7.9665 15.9330 1.0263 Constraint 153 608 5.4534 6.8167 13.6334 1.0263 Constraint 153 598 5.3356 6.6695 13.3390 1.0263 Constraint 65 237 5.1909 6.4886 12.9773 1.0263 Constraint 619 729 4.2690 5.3363 10.6725 1.0053 Constraint 608 729 4.6257 5.7821 11.5641 1.0053 Constraint 331 729 4.7066 5.8832 11.7665 1.0053 Constraint 202 681 6.3490 7.9362 15.8725 0.8398 Constraint 126 507 5.3844 6.7304 13.4609 0.8398 Constraint 126 422 4.9475 6.1844 12.3688 0.8398 Constraint 126 237 5.3267 6.6584 13.3168 0.8398 Constraint 98 303 6.0293 7.5366 15.0732 0.8398 Constraint 74 572 5.7879 7.2348 14.4697 0.8398 Constraint 74 563 5.6227 7.0284 14.0567 0.8398 Constraint 74 310 6.1691 7.7114 15.4229 0.8398 Constraint 65 579 5.9377 7.4221 14.8442 0.8398 Constraint 65 572 2.0750 2.5937 5.1874 0.8398 Constraint 65 542 5.7934 7.2418 14.4835 0.8398 Constraint 579 665 5.2300 6.5375 13.0750 0.6842 Constraint 362 642 5.0907 6.3634 12.7268 0.6842 Constraint 352 658 6.0305 7.5381 15.0762 0.6842 Constraint 352 650 5.9708 7.4635 14.9271 0.6842 Constraint 331 650 3.9590 4.9487 9.8974 0.6842 Constraint 325 673 3.9540 4.9424 9.8849 0.6842 Constraint 228 295 4.2775 5.3469 10.6939 0.6842 Constraint 220 542 6.2424 7.8030 15.6060 0.6842 Constraint 220 431 6.1035 7.6293 15.2587 0.6842 Constraint 220 385 5.9766 7.4707 14.9414 0.6842 Constraint 220 336 3.9409 4.9261 9.8522 0.6842 Constraint 220 310 6.2357 7.7947 15.5894 0.6842 Constraint 220 295 3.4395 4.2993 8.5986 0.6842 Constraint 220 289 6.2055 7.7569 15.5137 0.6842 Constraint 211 343 5.2944 6.6180 13.2360 0.6842 Constraint 211 336 3.3308 4.1636 8.3271 0.6842 Constraint 211 331 4.4836 5.6045 11.2090 0.6842 Constraint 211 325 3.0912 3.8641 7.7281 0.6842 Constraint 211 319 5.6515 7.0643 14.1286 0.6842 Constraint 211 310 2.8605 3.5756 7.1513 0.6842 Constraint 211 303 6.3833 7.9791 15.9583 0.6842 Constraint 202 563 3.7110 4.6388 9.2776 0.6842 Constraint 202 542 6.0252 7.5315 15.0629 0.6842 Constraint 202 336 4.3332 5.4165 10.8329 0.6842 Constraint 202 331 4.4322 5.5402 11.0805 0.6842 Constraint 202 325 5.9105 7.3881 14.7762 0.6842 Constraint 153 422 6.1421 7.6776 15.3552 0.6842 Constraint 146 507 5.6284 7.0355 14.0710 0.6842 Constraint 138 542 6.2577 7.8221 15.6442 0.6842 Constraint 138 507 6.2185 7.7732 15.5463 0.6842 Constraint 126 563 3.8449 4.8061 9.6122 0.6842 Constraint 126 542 6.1594 7.6992 15.3985 0.6842 Constraint 113 182 3.7619 4.7024 9.4048 0.6842 Constraint 98 182 3.3956 4.2446 8.4891 0.6842 Constraint 74 244 3.3974 4.2468 8.4936 0.6842 Constraint 65 244 5.6675 7.0844 14.1688 0.6842 Constraint 58 153 5.7584 7.1980 14.3960 0.6842 Constraint 50 153 4.4688 5.5860 11.1720 0.6842 Constraint 563 729 5.7890 7.2362 14.4725 0.5855 Constraint 146 343 5.2100 6.5126 13.0251 0.5855 Constraint 146 310 6.3590 7.9487 15.8975 0.5855 Constraint 138 635 6.3015 7.8768 15.7536 0.5855 Constraint 635 716 4.4770 5.5962 11.1924 0.4199 Constraint 628 723 4.5282 5.6603 11.3206 0.4199 Constraint 628 716 5.3441 6.6801 13.3602 0.4199 Constraint 619 723 5.8902 7.3628 14.7256 0.4199 Constraint 619 716 5.8170 7.2712 14.5424 0.4199 Constraint 598 729 5.8114 7.2642 14.5284 0.4199 Constraint 587 729 5.1631 6.4539 12.9079 0.4199 Constraint 486 665 6.2447 7.8059 15.6119 0.4199 Constraint 447 729 5.5631 6.9538 13.9077 0.4199 Constraint 374 707 6.0277 7.5346 15.0692 0.4199 Constraint 362 716 4.4147 5.5183 11.0366 0.4199 Constraint 352 723 6.0055 7.5068 15.0137 0.4199 Constraint 352 716 6.0113 7.5141 15.0282 0.4199 Constraint 331 723 4.9710 6.2138 12.4275 0.4199 Constraint 331 716 3.6720 4.5900 9.1801 0.4199 Constraint 58 619 4.7070 5.8838 11.7676 0.4199 Constraint 58 598 5.2816 6.6020 13.2040 0.4199 Constraint 58 587 4.3627 5.4533 10.9066 0.4199 Constraint 58 572 5.6915 7.1144 14.2287 0.4199 Constraint 58 563 6.1187 7.6484 15.2968 0.4199 Constraint 385 635 5.0443 6.3053 12.6106 0.3421 Constraint 374 723 5.1731 6.4664 12.9329 0.3421 Constraint 362 635 4.3668 5.4586 10.9171 0.3421 Constraint 352 673 6.1281 7.6601 15.3202 0.3421 Constraint 194 563 5.7861 7.2326 14.4653 0.3421 Constraint 194 331 5.0628 6.3285 12.6570 0.3421 Constraint 146 542 6.2910 7.8637 15.7275 0.3421 Constraint 146 518 5.4015 6.7519 13.5038 0.3421 Constraint 126 572 2.9543 3.6929 7.3857 0.3421 Constraint 106 518 5.7704 7.2130 14.4259 0.3421 Constraint 98 202 5.3484 6.6855 13.3710 0.3421 Constraint 98 170 3.9194 4.8993 9.7986 0.3421 Constraint 89 211 3.3145 4.1431 8.2862 0.3421 Constraint 89 202 4.2725 5.3407 10.6813 0.3421 Constraint 89 194 6.0347 7.5434 15.0868 0.3421 Constraint 89 182 4.8635 6.0794 12.1587 0.3421 Constraint 82 211 6.1109 7.6386 15.2773 0.3421 Constraint 82 194 4.7516 5.9395 11.8789 0.3421 Constraint 74 220 5.5845 6.9806 13.9613 0.3421 Constraint 65 228 6.2814 7.8518 15.7035 0.3421 Constraint 65 220 5.8968 7.3711 14.7421 0.3421 Constraint 58 237 5.6563 7.0704 14.1408 0.3421 Constraint 50 237 4.8774 6.0968 12.1935 0.3421 Constraint 723 729 0.8000 1.0000 2.0000 0.0000 Constraint 716 729 0.8000 1.0000 2.0000 0.0000 Constraint 716 723 0.8000 1.0000 2.0000 0.0000 Constraint 707 729 0.8000 1.0000 2.0000 0.0000 Constraint 707 723 0.8000 1.0000 2.0000 0.0000 Constraint 707 716 0.8000 1.0000 2.0000 0.0000 Constraint 692 729 0.8000 1.0000 2.0000 0.0000 Constraint 692 723 0.8000 1.0000 2.0000 0.0000 Constraint 692 716 0.8000 1.0000 2.0000 0.0000 Constraint 692 707 0.8000 1.0000 2.0000 0.0000 Constraint 681 729 0.8000 1.0000 2.0000 0.0000 Constraint 681 723 0.8000 1.0000 2.0000 0.0000 Constraint 681 716 0.8000 1.0000 2.0000 0.0000 Constraint 681 707 0.8000 1.0000 2.0000 0.0000 Constraint 681 692 0.8000 1.0000 2.0000 0.0000 Constraint 673 729 0.8000 1.0000 2.0000 0.0000 Constraint 673 723 0.8000 1.0000 2.0000 0.0000 Constraint 673 716 0.8000 1.0000 2.0000 0.0000 Constraint 673 707 0.8000 1.0000 2.0000 0.0000 Constraint 673 692 0.8000 1.0000 2.0000 0.0000 Constraint 673 681 0.8000 1.0000 2.0000 0.0000 Constraint 665 729 0.8000 1.0000 2.0000 0.0000 Constraint 665 723 0.8000 1.0000 2.0000 0.0000 Constraint 665 716 0.8000 1.0000 2.0000 0.0000 Constraint 665 707 0.8000 1.0000 2.0000 0.0000 Constraint 665 692 0.8000 1.0000 2.0000 0.0000 Constraint 665 681 0.8000 1.0000 2.0000 0.0000 Constraint 665 673 0.8000 1.0000 2.0000 0.0000 Constraint 658 723 0.8000 1.0000 2.0000 0.0000 Constraint 658 716 0.8000 1.0000 2.0000 0.0000 Constraint 658 707 0.8000 1.0000 2.0000 0.0000 Constraint 658 692 0.8000 1.0000 2.0000 0.0000 Constraint 658 681 0.8000 1.0000 2.0000 0.0000 Constraint 658 673 0.8000 1.0000 2.0000 0.0000 Constraint 658 665 0.8000 1.0000 2.0000 0.0000 Constraint 650 716 0.8000 1.0000 2.0000 0.0000 Constraint 650 707 0.8000 1.0000 2.0000 0.0000 Constraint 650 692 0.8000 1.0000 2.0000 0.0000 Constraint 650 681 0.8000 1.0000 2.0000 0.0000 Constraint 650 673 0.8000 1.0000 2.0000 0.0000 Constraint 650 665 0.8000 1.0000 2.0000 0.0000 Constraint 650 658 0.8000 1.0000 2.0000 0.0000 Constraint 642 707 0.8000 1.0000 2.0000 0.0000 Constraint 642 692 0.8000 1.0000 2.0000 0.0000 Constraint 642 681 0.8000 1.0000 2.0000 0.0000 Constraint 642 673 0.8000 1.0000 2.0000 0.0000 Constraint 642 665 0.8000 1.0000 2.0000 0.0000 Constraint 642 658 0.8000 1.0000 2.0000 0.0000 Constraint 642 650 0.8000 1.0000 2.0000 0.0000 Constraint 635 723 0.8000 1.0000 2.0000 0.0000 Constraint 635 707 0.8000 1.0000 2.0000 0.0000 Constraint 635 692 0.8000 1.0000 2.0000 0.0000 Constraint 635 681 0.8000 1.0000 2.0000 0.0000 Constraint 635 673 0.8000 1.0000 2.0000 0.0000 Constraint 635 665 0.8000 1.0000 2.0000 0.0000 Constraint 635 658 0.8000 1.0000 2.0000 0.0000 Constraint 635 650 0.8000 1.0000 2.0000 0.0000 Constraint 635 642 0.8000 1.0000 2.0000 0.0000 Constraint 628 707 0.8000 1.0000 2.0000 0.0000 Constraint 628 692 0.8000 1.0000 2.0000 0.0000 Constraint 628 681 0.8000 1.0000 2.0000 0.0000 Constraint 628 673 0.8000 1.0000 2.0000 0.0000 Constraint 628 665 0.8000 1.0000 2.0000 0.0000 Constraint 628 658 0.8000 1.0000 2.0000 0.0000 Constraint 628 650 0.8000 1.0000 2.0000 0.0000 Constraint 628 642 0.8000 1.0000 2.0000 0.0000 Constraint 628 635 0.8000 1.0000 2.0000 0.0000 Constraint 619 707 0.8000 1.0000 2.0000 0.0000 Constraint 619 692 0.8000 1.0000 2.0000 0.0000 Constraint 619 681 0.8000 1.0000 2.0000 0.0000 Constraint 619 673 0.8000 1.0000 2.0000 0.0000 Constraint 619 665 0.8000 1.0000 2.0000 0.0000 Constraint 619 658 0.8000 1.0000 2.0000 0.0000 Constraint 619 650 0.8000 1.0000 2.0000 0.0000 Constraint 619 642 0.8000 1.0000 2.0000 0.0000 Constraint 619 635 0.8000 1.0000 2.0000 0.0000 Constraint 619 628 0.8000 1.0000 2.0000 0.0000 Constraint 608 723 0.8000 1.0000 2.0000 0.0000 Constraint 608 716 0.8000 1.0000 2.0000 0.0000 Constraint 608 707 0.8000 1.0000 2.0000 0.0000 Constraint 608 692 0.8000 1.0000 2.0000 0.0000 Constraint 608 665 0.8000 1.0000 2.0000 0.0000 Constraint 608 658 0.8000 1.0000 2.0000 0.0000 Constraint 608 650 0.8000 1.0000 2.0000 0.0000 Constraint 608 642 0.8000 1.0000 2.0000 0.0000 Constraint 608 635 0.8000 1.0000 2.0000 0.0000 Constraint 608 628 0.8000 1.0000 2.0000 0.0000 Constraint 608 619 0.8000 1.0000 2.0000 0.0000 Constraint 598 723 0.8000 1.0000 2.0000 0.0000 Constraint 598 716 0.8000 1.0000 2.0000 0.0000 Constraint 598 707 0.8000 1.0000 2.0000 0.0000 Constraint 598 692 0.8000 1.0000 2.0000 0.0000 Constraint 598 665 0.8000 1.0000 2.0000 0.0000 Constraint 598 658 0.8000 1.0000 2.0000 0.0000 Constraint 598 650 0.8000 1.0000 2.0000 0.0000 Constraint 598 642 0.8000 1.0000 2.0000 0.0000 Constraint 598 635 0.8000 1.0000 2.0000 0.0000 Constraint 598 628 0.8000 1.0000 2.0000 0.0000 Constraint 598 619 0.8000 1.0000 2.0000 0.0000 Constraint 598 608 0.8000 1.0000 2.0000 0.0000 Constraint 587 723 0.8000 1.0000 2.0000 0.0000 Constraint 587 716 0.8000 1.0000 2.0000 0.0000 Constraint 587 707 0.8000 1.0000 2.0000 0.0000 Constraint 587 673 0.8000 1.0000 2.0000 0.0000 Constraint 587 665 0.8000 1.0000 2.0000 0.0000 Constraint 587 658 0.8000 1.0000 2.0000 0.0000 Constraint 587 650 0.8000 1.0000 2.0000 0.0000 Constraint 587 642 0.8000 1.0000 2.0000 0.0000 Constraint 587 635 0.8000 1.0000 2.0000 0.0000 Constraint 587 628 0.8000 1.0000 2.0000 0.0000 Constraint 587 619 0.8000 1.0000 2.0000 0.0000 Constraint 587 608 0.8000 1.0000 2.0000 0.0000 Constraint 587 598 0.8000 1.0000 2.0000 0.0000 Constraint 579 729 0.8000 1.0000 2.0000 0.0000 Constraint 579 723 0.8000 1.0000 2.0000 0.0000 Constraint 579 716 0.8000 1.0000 2.0000 0.0000 Constraint 579 707 0.8000 1.0000 2.0000 0.0000 Constraint 579 692 0.8000 1.0000 2.0000 0.0000 Constraint 579 673 0.8000 1.0000 2.0000 0.0000 Constraint 579 642 0.8000 1.0000 2.0000 0.0000 Constraint 579 635 0.8000 1.0000 2.0000 0.0000 Constraint 579 628 0.8000 1.0000 2.0000 0.0000 Constraint 579 619 0.8000 1.0000 2.0000 0.0000 Constraint 579 608 0.8000 1.0000 2.0000 0.0000 Constraint 579 598 0.8000 1.0000 2.0000 0.0000 Constraint 579 587 0.8000 1.0000 2.0000 0.0000 Constraint 572 729 0.8000 1.0000 2.0000 0.0000 Constraint 572 723 0.8000 1.0000 2.0000 0.0000 Constraint 572 716 0.8000 1.0000 2.0000 0.0000 Constraint 572 707 0.8000 1.0000 2.0000 0.0000 Constraint 572 692 0.8000 1.0000 2.0000 0.0000 Constraint 572 673 0.8000 1.0000 2.0000 0.0000 Constraint 572 665 0.8000 1.0000 2.0000 0.0000 Constraint 572 658 0.8000 1.0000 2.0000 0.0000 Constraint 572 650 0.8000 1.0000 2.0000 0.0000 Constraint 572 635 0.8000 1.0000 2.0000 0.0000 Constraint 572 628 0.8000 1.0000 2.0000 0.0000 Constraint 572 619 0.8000 1.0000 2.0000 0.0000 Constraint 572 608 0.8000 1.0000 2.0000 0.0000 Constraint 572 598 0.8000 1.0000 2.0000 0.0000 Constraint 572 587 0.8000 1.0000 2.0000 0.0000 Constraint 572 579 0.8000 1.0000 2.0000 0.0000 Constraint 563 723 0.8000 1.0000 2.0000 0.0000 Constraint 563 716 0.8000 1.0000 2.0000 0.0000 Constraint 563 707 0.8000 1.0000 2.0000 0.0000 Constraint 563 692 0.8000 1.0000 2.0000 0.0000 Constraint 563 681 0.8000 1.0000 2.0000 0.0000 Constraint 563 673 0.8000 1.0000 2.0000 0.0000 Constraint 563 628 0.8000 1.0000 2.0000 0.0000 Constraint 563 619 0.8000 1.0000 2.0000 0.0000 Constraint 563 608 0.8000 1.0000 2.0000 0.0000 Constraint 563 598 0.8000 1.0000 2.0000 0.0000 Constraint 563 587 0.8000 1.0000 2.0000 0.0000 Constraint 563 579 0.8000 1.0000 2.0000 0.0000 Constraint 563 572 0.8000 1.0000 2.0000 0.0000 Constraint 556 729 0.8000 1.0000 2.0000 0.0000 Constraint 556 723 0.8000 1.0000 2.0000 0.0000 Constraint 556 716 0.8000 1.0000 2.0000 0.0000 Constraint 556 692 0.8000 1.0000 2.0000 0.0000 Constraint 556 681 0.8000 1.0000 2.0000 0.0000 Constraint 556 673 0.8000 1.0000 2.0000 0.0000 Constraint 556 665 0.8000 1.0000 2.0000 0.0000 Constraint 556 628 0.8000 1.0000 2.0000 0.0000 Constraint 556 619 0.8000 1.0000 2.0000 0.0000 Constraint 556 608 0.8000 1.0000 2.0000 0.0000 Constraint 556 598 0.8000 1.0000 2.0000 0.0000 Constraint 556 587 0.8000 1.0000 2.0000 0.0000 Constraint 556 579 0.8000 1.0000 2.0000 0.0000 Constraint 556 572 0.8000 1.0000 2.0000 0.0000 Constraint 556 563 0.8000 1.0000 2.0000 0.0000 Constraint 551 729 0.8000 1.0000 2.0000 0.0000 Constraint 551 723 0.8000 1.0000 2.0000 0.0000 Constraint 551 716 0.8000 1.0000 2.0000 0.0000 Constraint 551 707 0.8000 1.0000 2.0000 0.0000 Constraint 551 692 0.8000 1.0000 2.0000 0.0000 Constraint 551 650 0.8000 1.0000 2.0000 0.0000 Constraint 551 642 0.8000 1.0000 2.0000 0.0000 Constraint 551 628 0.8000 1.0000 2.0000 0.0000 Constraint 551 619 0.8000 1.0000 2.0000 0.0000 Constraint 551 608 0.8000 1.0000 2.0000 0.0000 Constraint 551 598 0.8000 1.0000 2.0000 0.0000 Constraint 551 587 0.8000 1.0000 2.0000 0.0000 Constraint 551 579 0.8000 1.0000 2.0000 0.0000 Constraint 551 572 0.8000 1.0000 2.0000 0.0000 Constraint 551 563 0.8000 1.0000 2.0000 0.0000 Constraint 551 556 0.8000 1.0000 2.0000 0.0000 Constraint 542 729 0.8000 1.0000 2.0000 0.0000 Constraint 542 723 0.8000 1.0000 2.0000 0.0000 Constraint 542 716 0.8000 1.0000 2.0000 0.0000 Constraint 542 707 0.8000 1.0000 2.0000 0.0000 Constraint 542 692 0.8000 1.0000 2.0000 0.0000 Constraint 542 650 0.8000 1.0000 2.0000 0.0000 Constraint 542 642 0.8000 1.0000 2.0000 0.0000 Constraint 542 635 0.8000 1.0000 2.0000 0.0000 Constraint 542 628 0.8000 1.0000 2.0000 0.0000 Constraint 542 619 0.8000 1.0000 2.0000 0.0000 Constraint 542 608 0.8000 1.0000 2.0000 0.0000 Constraint 542 598 0.8000 1.0000 2.0000 0.0000 Constraint 542 587 0.8000 1.0000 2.0000 0.0000 Constraint 542 579 0.8000 1.0000 2.0000 0.0000 Constraint 542 572 0.8000 1.0000 2.0000 0.0000 Constraint 542 563 0.8000 1.0000 2.0000 0.0000 Constraint 542 556 0.8000 1.0000 2.0000 0.0000 Constraint 542 551 0.8000 1.0000 2.0000 0.0000 Constraint 533 729 0.8000 1.0000 2.0000 0.0000 Constraint 533 723 0.8000 1.0000 2.0000 0.0000 Constraint 533 716 0.8000 1.0000 2.0000 0.0000 Constraint 533 707 0.8000 1.0000 2.0000 0.0000 Constraint 533 692 0.8000 1.0000 2.0000 0.0000 Constraint 533 665 0.8000 1.0000 2.0000 0.0000 Constraint 533 658 0.8000 1.0000 2.0000 0.0000 Constraint 533 650 0.8000 1.0000 2.0000 0.0000 Constraint 533 642 0.8000 1.0000 2.0000 0.0000 Constraint 533 628 0.8000 1.0000 2.0000 0.0000 Constraint 533 619 0.8000 1.0000 2.0000 0.0000 Constraint 533 608 0.8000 1.0000 2.0000 0.0000 Constraint 533 598 0.8000 1.0000 2.0000 0.0000 Constraint 533 587 0.8000 1.0000 2.0000 0.0000 Constraint 533 579 0.8000 1.0000 2.0000 0.0000 Constraint 533 572 0.8000 1.0000 2.0000 0.0000 Constraint 533 563 0.8000 1.0000 2.0000 0.0000 Constraint 533 556 0.8000 1.0000 2.0000 0.0000 Constraint 533 551 0.8000 1.0000 2.0000 0.0000 Constraint 533 542 0.8000 1.0000 2.0000 0.0000 Constraint 525 729 0.8000 1.0000 2.0000 0.0000 Constraint 525 723 0.8000 1.0000 2.0000 0.0000 Constraint 525 716 0.8000 1.0000 2.0000 0.0000 Constraint 525 707 0.8000 1.0000 2.0000 0.0000 Constraint 525 692 0.8000 1.0000 2.0000 0.0000 Constraint 525 673 0.8000 1.0000 2.0000 0.0000 Constraint 525 665 0.8000 1.0000 2.0000 0.0000 Constraint 525 658 0.8000 1.0000 2.0000 0.0000 Constraint 525 650 0.8000 1.0000 2.0000 0.0000 Constraint 525 642 0.8000 1.0000 2.0000 0.0000 Constraint 525 635 0.8000 1.0000 2.0000 0.0000 Constraint 525 628 0.8000 1.0000 2.0000 0.0000 Constraint 525 619 0.8000 1.0000 2.0000 0.0000 Constraint 525 608 0.8000 1.0000 2.0000 0.0000 Constraint 525 598 0.8000 1.0000 2.0000 0.0000 Constraint 525 587 0.8000 1.0000 2.0000 0.0000 Constraint 525 579 0.8000 1.0000 2.0000 0.0000 Constraint 525 572 0.8000 1.0000 2.0000 0.0000 Constraint 525 563 0.8000 1.0000 2.0000 0.0000 Constraint 525 556 0.8000 1.0000 2.0000 0.0000 Constraint 525 551 0.8000 1.0000 2.0000 0.0000 Constraint 525 542 0.8000 1.0000 2.0000 0.0000 Constraint 525 533 0.8000 1.0000 2.0000 0.0000 Constraint 518 729 0.8000 1.0000 2.0000 0.0000 Constraint 518 723 0.8000 1.0000 2.0000 0.0000 Constraint 518 716 0.8000 1.0000 2.0000 0.0000 Constraint 518 707 0.8000 1.0000 2.0000 0.0000 Constraint 518 692 0.8000 1.0000 2.0000 0.0000 Constraint 518 681 0.8000 1.0000 2.0000 0.0000 Constraint 518 673 0.8000 1.0000 2.0000 0.0000 Constraint 518 665 0.8000 1.0000 2.0000 0.0000 Constraint 518 658 0.8000 1.0000 2.0000 0.0000 Constraint 518 650 0.8000 1.0000 2.0000 0.0000 Constraint 518 642 0.8000 1.0000 2.0000 0.0000 Constraint 518 635 0.8000 1.0000 2.0000 0.0000 Constraint 518 628 0.8000 1.0000 2.0000 0.0000 Constraint 518 619 0.8000 1.0000 2.0000 0.0000 Constraint 518 608 0.8000 1.0000 2.0000 0.0000 Constraint 518 598 0.8000 1.0000 2.0000 0.0000 Constraint 518 587 0.8000 1.0000 2.0000 0.0000 Constraint 518 579 0.8000 1.0000 2.0000 0.0000 Constraint 518 572 0.8000 1.0000 2.0000 0.0000 Constraint 518 563 0.8000 1.0000 2.0000 0.0000 Constraint 518 556 0.8000 1.0000 2.0000 0.0000 Constraint 518 551 0.8000 1.0000 2.0000 0.0000 Constraint 518 542 0.8000 1.0000 2.0000 0.0000 Constraint 518 533 0.8000 1.0000 2.0000 0.0000 Constraint 518 525 0.8000 1.0000 2.0000 0.0000 Constraint 507 729 0.8000 1.0000 2.0000 0.0000 Constraint 507 723 0.8000 1.0000 2.0000 0.0000 Constraint 507 716 0.8000 1.0000 2.0000 0.0000 Constraint 507 707 0.8000 1.0000 2.0000 0.0000 Constraint 507 692 0.8000 1.0000 2.0000 0.0000 Constraint 507 681 0.8000 1.0000 2.0000 0.0000 Constraint 507 673 0.8000 1.0000 2.0000 0.0000 Constraint 507 665 0.8000 1.0000 2.0000 0.0000 Constraint 507 658 0.8000 1.0000 2.0000 0.0000 Constraint 507 650 0.8000 1.0000 2.0000 0.0000 Constraint 507 642 0.8000 1.0000 2.0000 0.0000 Constraint 507 635 0.8000 1.0000 2.0000 0.0000 Constraint 507 628 0.8000 1.0000 2.0000 0.0000 Constraint 507 619 0.8000 1.0000 2.0000 0.0000 Constraint 507 608 0.8000 1.0000 2.0000 0.0000 Constraint 507 598 0.8000 1.0000 2.0000 0.0000 Constraint 507 572 0.8000 1.0000 2.0000 0.0000 Constraint 507 563 0.8000 1.0000 2.0000 0.0000 Constraint 507 556 0.8000 1.0000 2.0000 0.0000 Constraint 507 551 0.8000 1.0000 2.0000 0.0000 Constraint 507 542 0.8000 1.0000 2.0000 0.0000 Constraint 507 533 0.8000 1.0000 2.0000 0.0000 Constraint 507 525 0.8000 1.0000 2.0000 0.0000 Constraint 507 518 0.8000 1.0000 2.0000 0.0000 Constraint 494 716 0.8000 1.0000 2.0000 0.0000 Constraint 494 707 0.8000 1.0000 2.0000 0.0000 Constraint 494 681 0.8000 1.0000 2.0000 0.0000 Constraint 494 665 0.8000 1.0000 2.0000 0.0000 Constraint 494 658 0.8000 1.0000 2.0000 0.0000 Constraint 494 650 0.8000 1.0000 2.0000 0.0000 Constraint 494 642 0.8000 1.0000 2.0000 0.0000 Constraint 494 635 0.8000 1.0000 2.0000 0.0000 Constraint 494 628 0.8000 1.0000 2.0000 0.0000 Constraint 494 619 0.8000 1.0000 2.0000 0.0000 Constraint 494 608 0.8000 1.0000 2.0000 0.0000 Constraint 494 598 0.8000 1.0000 2.0000 0.0000 Constraint 494 587 0.8000 1.0000 2.0000 0.0000 Constraint 494 579 0.8000 1.0000 2.0000 0.0000 Constraint 494 563 0.8000 1.0000 2.0000 0.0000 Constraint 494 556 0.8000 1.0000 2.0000 0.0000 Constraint 494 551 0.8000 1.0000 2.0000 0.0000 Constraint 494 542 0.8000 1.0000 2.0000 0.0000 Constraint 494 533 0.8000 1.0000 2.0000 0.0000 Constraint 494 525 0.8000 1.0000 2.0000 0.0000 Constraint 494 518 0.8000 1.0000 2.0000 0.0000 Constraint 494 507 0.8000 1.0000 2.0000 0.0000 Constraint 486 729 0.8000 1.0000 2.0000 0.0000 Constraint 486 723 0.8000 1.0000 2.0000 0.0000 Constraint 486 716 0.8000 1.0000 2.0000 0.0000 Constraint 486 707 0.8000 1.0000 2.0000 0.0000 Constraint 486 692 0.8000 1.0000 2.0000 0.0000 Constraint 486 681 0.8000 1.0000 2.0000 0.0000 Constraint 486 673 0.8000 1.0000 2.0000 0.0000 Constraint 486 642 0.8000 1.0000 2.0000 0.0000 Constraint 486 635 0.8000 1.0000 2.0000 0.0000 Constraint 486 628 0.8000 1.0000 2.0000 0.0000 Constraint 486 619 0.8000 1.0000 2.0000 0.0000 Constraint 486 598 0.8000 1.0000 2.0000 0.0000 Constraint 486 587 0.8000 1.0000 2.0000 0.0000 Constraint 486 563 0.8000 1.0000 2.0000 0.0000 Constraint 486 551 0.8000 1.0000 2.0000 0.0000 Constraint 486 542 0.8000 1.0000 2.0000 0.0000 Constraint 486 533 0.8000 1.0000 2.0000 0.0000 Constraint 486 525 0.8000 1.0000 2.0000 0.0000 Constraint 486 518 0.8000 1.0000 2.0000 0.0000 Constraint 486 507 0.8000 1.0000 2.0000 0.0000 Constraint 486 494 0.8000 1.0000 2.0000 0.0000 Constraint 478 729 0.8000 1.0000 2.0000 0.0000 Constraint 478 723 0.8000 1.0000 2.0000 0.0000 Constraint 478 707 0.8000 1.0000 2.0000 0.0000 Constraint 478 692 0.8000 1.0000 2.0000 0.0000 Constraint 478 681 0.8000 1.0000 2.0000 0.0000 Constraint 478 650 0.8000 1.0000 2.0000 0.0000 Constraint 478 642 0.8000 1.0000 2.0000 0.0000 Constraint 478 635 0.8000 1.0000 2.0000 0.0000 Constraint 478 628 0.8000 1.0000 2.0000 0.0000 Constraint 478 619 0.8000 1.0000 2.0000 0.0000 Constraint 478 608 0.8000 1.0000 2.0000 0.0000 Constraint 478 598 0.8000 1.0000 2.0000 0.0000 Constraint 478 587 0.8000 1.0000 2.0000 0.0000 Constraint 478 579 0.8000 1.0000 2.0000 0.0000 Constraint 478 572 0.8000 1.0000 2.0000 0.0000 Constraint 478 563 0.8000 1.0000 2.0000 0.0000 Constraint 478 556 0.8000 1.0000 2.0000 0.0000 Constraint 478 542 0.8000 1.0000 2.0000 0.0000 Constraint 478 533 0.8000 1.0000 2.0000 0.0000 Constraint 478 525 0.8000 1.0000 2.0000 0.0000 Constraint 478 518 0.8000 1.0000 2.0000 0.0000 Constraint 478 507 0.8000 1.0000 2.0000 0.0000 Constraint 478 494 0.8000 1.0000 2.0000 0.0000 Constraint 478 486 0.8000 1.0000 2.0000 0.0000 Constraint 471 729 0.8000 1.0000 2.0000 0.0000 Constraint 471 723 0.8000 1.0000 2.0000 0.0000 Constraint 471 716 0.8000 1.0000 2.0000 0.0000 Constraint 471 707 0.8000 1.0000 2.0000 0.0000 Constraint 471 692 0.8000 1.0000 2.0000 0.0000 Constraint 471 681 0.8000 1.0000 2.0000 0.0000 Constraint 471 673 0.8000 1.0000 2.0000 0.0000 Constraint 471 665 0.8000 1.0000 2.0000 0.0000 Constraint 471 658 0.8000 1.0000 2.0000 0.0000 Constraint 471 650 0.8000 1.0000 2.0000 0.0000 Constraint 471 642 0.8000 1.0000 2.0000 0.0000 Constraint 471 635 0.8000 1.0000 2.0000 0.0000 Constraint 471 628 0.8000 1.0000 2.0000 0.0000 Constraint 471 619 0.8000 1.0000 2.0000 0.0000 Constraint 471 587 0.8000 1.0000 2.0000 0.0000 Constraint 471 533 0.8000 1.0000 2.0000 0.0000 Constraint 471 525 0.8000 1.0000 2.0000 0.0000 Constraint 471 518 0.8000 1.0000 2.0000 0.0000 Constraint 471 507 0.8000 1.0000 2.0000 0.0000 Constraint 471 494 0.8000 1.0000 2.0000 0.0000 Constraint 471 486 0.8000 1.0000 2.0000 0.0000 Constraint 471 478 0.8000 1.0000 2.0000 0.0000 Constraint 459 729 0.8000 1.0000 2.0000 0.0000 Constraint 459 723 0.8000 1.0000 2.0000 0.0000 Constraint 459 716 0.8000 1.0000 2.0000 0.0000 Constraint 459 707 0.8000 1.0000 2.0000 0.0000 Constraint 459 692 0.8000 1.0000 2.0000 0.0000 Constraint 459 681 0.8000 1.0000 2.0000 0.0000 Constraint 459 673 0.8000 1.0000 2.0000 0.0000 Constraint 459 533 0.8000 1.0000 2.0000 0.0000 Constraint 459 518 0.8000 1.0000 2.0000 0.0000 Constraint 459 507 0.8000 1.0000 2.0000 0.0000 Constraint 459 494 0.8000 1.0000 2.0000 0.0000 Constraint 459 486 0.8000 1.0000 2.0000 0.0000 Constraint 459 478 0.8000 1.0000 2.0000 0.0000 Constraint 459 471 0.8000 1.0000 2.0000 0.0000 Constraint 452 729 0.8000 1.0000 2.0000 0.0000 Constraint 452 723 0.8000 1.0000 2.0000 0.0000 Constraint 452 716 0.8000 1.0000 2.0000 0.0000 Constraint 452 707 0.8000 1.0000 2.0000 0.0000 Constraint 452 692 0.8000 1.0000 2.0000 0.0000 Constraint 452 628 0.8000 1.0000 2.0000 0.0000 Constraint 452 619 0.8000 1.0000 2.0000 0.0000 Constraint 452 587 0.8000 1.0000 2.0000 0.0000 Constraint 452 507 0.8000 1.0000 2.0000 0.0000 Constraint 452 494 0.8000 1.0000 2.0000 0.0000 Constraint 452 486 0.8000 1.0000 2.0000 0.0000 Constraint 452 478 0.8000 1.0000 2.0000 0.0000 Constraint 452 471 0.8000 1.0000 2.0000 0.0000 Constraint 452 459 0.8000 1.0000 2.0000 0.0000 Constraint 447 723 0.8000 1.0000 2.0000 0.0000 Constraint 447 707 0.8000 1.0000 2.0000 0.0000 Constraint 447 635 0.8000 1.0000 2.0000 0.0000 Constraint 447 628 0.8000 1.0000 2.0000 0.0000 Constraint 447 619 0.8000 1.0000 2.0000 0.0000 Constraint 447 608 0.8000 1.0000 2.0000 0.0000 Constraint 447 598 0.8000 1.0000 2.0000 0.0000 Constraint 447 587 0.8000 1.0000 2.0000 0.0000 Constraint 447 579 0.8000 1.0000 2.0000 0.0000 Constraint 447 556 0.8000 1.0000 2.0000 0.0000 Constraint 447 551 0.8000 1.0000 2.0000 0.0000 Constraint 447 542 0.8000 1.0000 2.0000 0.0000 Constraint 447 533 0.8000 1.0000 2.0000 0.0000 Constraint 447 525 0.8000 1.0000 2.0000 0.0000 Constraint 447 518 0.8000 1.0000 2.0000 0.0000 Constraint 447 507 0.8000 1.0000 2.0000 0.0000 Constraint 447 494 0.8000 1.0000 2.0000 0.0000 Constraint 447 486 0.8000 1.0000 2.0000 0.0000 Constraint 447 478 0.8000 1.0000 2.0000 0.0000 Constraint 447 471 0.8000 1.0000 2.0000 0.0000 Constraint 447 459 0.8000 1.0000 2.0000 0.0000 Constraint 447 452 0.8000 1.0000 2.0000 0.0000 Constraint 439 707 0.8000 1.0000 2.0000 0.0000 Constraint 439 642 0.8000 1.0000 2.0000 0.0000 Constraint 439 635 0.8000 1.0000 2.0000 0.0000 Constraint 439 619 0.8000 1.0000 2.0000 0.0000 Constraint 439 608 0.8000 1.0000 2.0000 0.0000 Constraint 439 598 0.8000 1.0000 2.0000 0.0000 Constraint 439 563 0.8000 1.0000 2.0000 0.0000 Constraint 439 556 0.8000 1.0000 2.0000 0.0000 Constraint 439 551 0.8000 1.0000 2.0000 0.0000 Constraint 439 542 0.8000 1.0000 2.0000 0.0000 Constraint 439 533 0.8000 1.0000 2.0000 0.0000 Constraint 439 525 0.8000 1.0000 2.0000 0.0000 Constraint 439 518 0.8000 1.0000 2.0000 0.0000 Constraint 439 507 0.8000 1.0000 2.0000 0.0000 Constraint 439 494 0.8000 1.0000 2.0000 0.0000 Constraint 439 486 0.8000 1.0000 2.0000 0.0000 Constraint 439 478 0.8000 1.0000 2.0000 0.0000 Constraint 439 471 0.8000 1.0000 2.0000 0.0000 Constraint 439 459 0.8000 1.0000 2.0000 0.0000 Constraint 439 452 0.8000 1.0000 2.0000 0.0000 Constraint 439 447 0.8000 1.0000 2.0000 0.0000 Constraint 431 729 0.8000 1.0000 2.0000 0.0000 Constraint 431 723 0.8000 1.0000 2.0000 0.0000 Constraint 431 716 0.8000 1.0000 2.0000 0.0000 Constraint 431 707 0.8000 1.0000 2.0000 0.0000 Constraint 431 642 0.8000 1.0000 2.0000 0.0000 Constraint 431 635 0.8000 1.0000 2.0000 0.0000 Constraint 431 628 0.8000 1.0000 2.0000 0.0000 Constraint 431 619 0.8000 1.0000 2.0000 0.0000 Constraint 431 608 0.8000 1.0000 2.0000 0.0000 Constraint 431 598 0.8000 1.0000 2.0000 0.0000 Constraint 431 587 0.8000 1.0000 2.0000 0.0000 Constraint 431 556 0.8000 1.0000 2.0000 0.0000 Constraint 431 542 0.8000 1.0000 2.0000 0.0000 Constraint 431 525 0.8000 1.0000 2.0000 0.0000 Constraint 431 486 0.8000 1.0000 2.0000 0.0000 Constraint 431 478 0.8000 1.0000 2.0000 0.0000 Constraint 431 471 0.8000 1.0000 2.0000 0.0000 Constraint 431 459 0.8000 1.0000 2.0000 0.0000 Constraint 431 452 0.8000 1.0000 2.0000 0.0000 Constraint 431 447 0.8000 1.0000 2.0000 0.0000 Constraint 431 439 0.8000 1.0000 2.0000 0.0000 Constraint 422 729 0.8000 1.0000 2.0000 0.0000 Constraint 422 658 0.8000 1.0000 2.0000 0.0000 Constraint 422 650 0.8000 1.0000 2.0000 0.0000 Constraint 422 642 0.8000 1.0000 2.0000 0.0000 Constraint 422 635 0.8000 1.0000 2.0000 0.0000 Constraint 422 628 0.8000 1.0000 2.0000 0.0000 Constraint 422 619 0.8000 1.0000 2.0000 0.0000 Constraint 422 608 0.8000 1.0000 2.0000 0.0000 Constraint 422 598 0.8000 1.0000 2.0000 0.0000 Constraint 422 572 0.8000 1.0000 2.0000 0.0000 Constraint 422 563 0.8000 1.0000 2.0000 0.0000 Constraint 422 556 0.8000 1.0000 2.0000 0.0000 Constraint 422 551 0.8000 1.0000 2.0000 0.0000 Constraint 422 542 0.8000 1.0000 2.0000 0.0000 Constraint 422 533 0.8000 1.0000 2.0000 0.0000 Constraint 422 525 0.8000 1.0000 2.0000 0.0000 Constraint 422 518 0.8000 1.0000 2.0000 0.0000 Constraint 422 507 0.8000 1.0000 2.0000 0.0000 Constraint 422 486 0.8000 1.0000 2.0000 0.0000 Constraint 422 478 0.8000 1.0000 2.0000 0.0000 Constraint 422 471 0.8000 1.0000 2.0000 0.0000 Constraint 422 459 0.8000 1.0000 2.0000 0.0000 Constraint 422 452 0.8000 1.0000 2.0000 0.0000 Constraint 422 447 0.8000 1.0000 2.0000 0.0000 Constraint 422 439 0.8000 1.0000 2.0000 0.0000 Constraint 422 431 0.8000 1.0000 2.0000 0.0000 Constraint 414 729 0.8000 1.0000 2.0000 0.0000 Constraint 414 658 0.8000 1.0000 2.0000 0.0000 Constraint 414 642 0.8000 1.0000 2.0000 0.0000 Constraint 414 635 0.8000 1.0000 2.0000 0.0000 Constraint 414 628 0.8000 1.0000 2.0000 0.0000 Constraint 414 619 0.8000 1.0000 2.0000 0.0000 Constraint 414 608 0.8000 1.0000 2.0000 0.0000 Constraint 414 572 0.8000 1.0000 2.0000 0.0000 Constraint 414 563 0.8000 1.0000 2.0000 0.0000 Constraint 414 556 0.8000 1.0000 2.0000 0.0000 Constraint 414 551 0.8000 1.0000 2.0000 0.0000 Constraint 414 542 0.8000 1.0000 2.0000 0.0000 Constraint 414 533 0.8000 1.0000 2.0000 0.0000 Constraint 414 525 0.8000 1.0000 2.0000 0.0000 Constraint 414 518 0.8000 1.0000 2.0000 0.0000 Constraint 414 507 0.8000 1.0000 2.0000 0.0000 Constraint 414 494 0.8000 1.0000 2.0000 0.0000 Constraint 414 486 0.8000 1.0000 2.0000 0.0000 Constraint 414 478 0.8000 1.0000 2.0000 0.0000 Constraint 414 471 0.8000 1.0000 2.0000 0.0000 Constraint 414 459 0.8000 1.0000 2.0000 0.0000 Constraint 414 452 0.8000 1.0000 2.0000 0.0000 Constraint 414 447 0.8000 1.0000 2.0000 0.0000 Constraint 414 439 0.8000 1.0000 2.0000 0.0000 Constraint 414 431 0.8000 1.0000 2.0000 0.0000 Constraint 414 422 0.8000 1.0000 2.0000 0.0000 Constraint 402 729 0.8000 1.0000 2.0000 0.0000 Constraint 402 673 0.8000 1.0000 2.0000 0.0000 Constraint 402 665 0.8000 1.0000 2.0000 0.0000 Constraint 402 658 0.8000 1.0000 2.0000 0.0000 Constraint 402 650 0.8000 1.0000 2.0000 0.0000 Constraint 402 642 0.8000 1.0000 2.0000 0.0000 Constraint 402 635 0.8000 1.0000 2.0000 0.0000 Constraint 402 628 0.8000 1.0000 2.0000 0.0000 Constraint 402 619 0.8000 1.0000 2.0000 0.0000 Constraint 402 608 0.8000 1.0000 2.0000 0.0000 Constraint 402 598 0.8000 1.0000 2.0000 0.0000 Constraint 402 587 0.8000 1.0000 2.0000 0.0000 Constraint 402 579 0.8000 1.0000 2.0000 0.0000 Constraint 402 572 0.8000 1.0000 2.0000 0.0000 Constraint 402 563 0.8000 1.0000 2.0000 0.0000 Constraint 402 556 0.8000 1.0000 2.0000 0.0000 Constraint 402 551 0.8000 1.0000 2.0000 0.0000 Constraint 402 542 0.8000 1.0000 2.0000 0.0000 Constraint 402 533 0.8000 1.0000 2.0000 0.0000 Constraint 402 525 0.8000 1.0000 2.0000 0.0000 Constraint 402 518 0.8000 1.0000 2.0000 0.0000 Constraint 402 507 0.8000 1.0000 2.0000 0.0000 Constraint 402 494 0.8000 1.0000 2.0000 0.0000 Constraint 402 486 0.8000 1.0000 2.0000 0.0000 Constraint 402 478 0.8000 1.0000 2.0000 0.0000 Constraint 402 471 0.8000 1.0000 2.0000 0.0000 Constraint 402 459 0.8000 1.0000 2.0000 0.0000 Constraint 402 452 0.8000 1.0000 2.0000 0.0000 Constraint 402 447 0.8000 1.0000 2.0000 0.0000 Constraint 402 439 0.8000 1.0000 2.0000 0.0000 Constraint 402 431 0.8000 1.0000 2.0000 0.0000 Constraint 402 422 0.8000 1.0000 2.0000 0.0000 Constraint 402 414 0.8000 1.0000 2.0000 0.0000 Constraint 393 729 0.8000 1.0000 2.0000 0.0000 Constraint 393 658 0.8000 1.0000 2.0000 0.0000 Constraint 393 650 0.8000 1.0000 2.0000 0.0000 Constraint 393 642 0.8000 1.0000 2.0000 0.0000 Constraint 393 635 0.8000 1.0000 2.0000 0.0000 Constraint 393 628 0.8000 1.0000 2.0000 0.0000 Constraint 393 619 0.8000 1.0000 2.0000 0.0000 Constraint 393 608 0.8000 1.0000 2.0000 0.0000 Constraint 393 587 0.8000 1.0000 2.0000 0.0000 Constraint 393 579 0.8000 1.0000 2.0000 0.0000 Constraint 393 572 0.8000 1.0000 2.0000 0.0000 Constraint 393 563 0.8000 1.0000 2.0000 0.0000 Constraint 393 556 0.8000 1.0000 2.0000 0.0000 Constraint 393 551 0.8000 1.0000 2.0000 0.0000 Constraint 393 542 0.8000 1.0000 2.0000 0.0000 Constraint 393 533 0.8000 1.0000 2.0000 0.0000 Constraint 393 525 0.8000 1.0000 2.0000 0.0000 Constraint 393 518 0.8000 1.0000 2.0000 0.0000 Constraint 393 507 0.8000 1.0000 2.0000 0.0000 Constraint 393 494 0.8000 1.0000 2.0000 0.0000 Constraint 393 486 0.8000 1.0000 2.0000 0.0000 Constraint 393 478 0.8000 1.0000 2.0000 0.0000 Constraint 393 471 0.8000 1.0000 2.0000 0.0000 Constraint 393 459 0.8000 1.0000 2.0000 0.0000 Constraint 393 452 0.8000 1.0000 2.0000 0.0000 Constraint 393 447 0.8000 1.0000 2.0000 0.0000 Constraint 393 439 0.8000 1.0000 2.0000 0.0000 Constraint 393 431 0.8000 1.0000 2.0000 0.0000 Constraint 393 422 0.8000 1.0000 2.0000 0.0000 Constraint 393 414 0.8000 1.0000 2.0000 0.0000 Constraint 393 402 0.8000 1.0000 2.0000 0.0000 Constraint 385 729 0.8000 1.0000 2.0000 0.0000 Constraint 385 716 0.8000 1.0000 2.0000 0.0000 Constraint 385 642 0.8000 1.0000 2.0000 0.0000 Constraint 385 628 0.8000 1.0000 2.0000 0.0000 Constraint 385 619 0.8000 1.0000 2.0000 0.0000 Constraint 385 608 0.8000 1.0000 2.0000 0.0000 Constraint 385 598 0.8000 1.0000 2.0000 0.0000 Constraint 385 587 0.8000 1.0000 2.0000 0.0000 Constraint 385 572 0.8000 1.0000 2.0000 0.0000 Constraint 385 556 0.8000 1.0000 2.0000 0.0000 Constraint 385 551 0.8000 1.0000 2.0000 0.0000 Constraint 385 542 0.8000 1.0000 2.0000 0.0000 Constraint 385 533 0.8000 1.0000 2.0000 0.0000 Constraint 385 525 0.8000 1.0000 2.0000 0.0000 Constraint 385 518 0.8000 1.0000 2.0000 0.0000 Constraint 385 507 0.8000 1.0000 2.0000 0.0000 Constraint 385 494 0.8000 1.0000 2.0000 0.0000 Constraint 385 486 0.8000 1.0000 2.0000 0.0000 Constraint 385 478 0.8000 1.0000 2.0000 0.0000 Constraint 385 471 0.8000 1.0000 2.0000 0.0000 Constraint 385 459 0.8000 1.0000 2.0000 0.0000 Constraint 385 452 0.8000 1.0000 2.0000 0.0000 Constraint 385 447 0.8000 1.0000 2.0000 0.0000 Constraint 385 439 0.8000 1.0000 2.0000 0.0000 Constraint 385 431 0.8000 1.0000 2.0000 0.0000 Constraint 385 422 0.8000 1.0000 2.0000 0.0000 Constraint 385 414 0.8000 1.0000 2.0000 0.0000 Constraint 385 402 0.8000 1.0000 2.0000 0.0000 Constraint 385 393 0.8000 1.0000 2.0000 0.0000 Constraint 374 729 0.8000 1.0000 2.0000 0.0000 Constraint 374 716 0.8000 1.0000 2.0000 0.0000 Constraint 374 692 0.8000 1.0000 2.0000 0.0000 Constraint 374 642 0.8000 1.0000 2.0000 0.0000 Constraint 374 635 0.8000 1.0000 2.0000 0.0000 Constraint 374 628 0.8000 1.0000 2.0000 0.0000 Constraint 374 619 0.8000 1.0000 2.0000 0.0000 Constraint 374 608 0.8000 1.0000 2.0000 0.0000 Constraint 374 598 0.8000 1.0000 2.0000 0.0000 Constraint 374 587 0.8000 1.0000 2.0000 0.0000 Constraint 374 579 0.8000 1.0000 2.0000 0.0000 Constraint 374 572 0.8000 1.0000 2.0000 0.0000 Constraint 374 563 0.8000 1.0000 2.0000 0.0000 Constraint 374 556 0.8000 1.0000 2.0000 0.0000 Constraint 374 551 0.8000 1.0000 2.0000 0.0000 Constraint 374 542 0.8000 1.0000 2.0000 0.0000 Constraint 374 533 0.8000 1.0000 2.0000 0.0000 Constraint 374 525 0.8000 1.0000 2.0000 0.0000 Constraint 374 518 0.8000 1.0000 2.0000 0.0000 Constraint 374 507 0.8000 1.0000 2.0000 0.0000 Constraint 374 494 0.8000 1.0000 2.0000 0.0000 Constraint 374 486 0.8000 1.0000 2.0000 0.0000 Constraint 374 478 0.8000 1.0000 2.0000 0.0000 Constraint 374 471 0.8000 1.0000 2.0000 0.0000 Constraint 374 459 0.8000 1.0000 2.0000 0.0000 Constraint 374 452 0.8000 1.0000 2.0000 0.0000 Constraint 374 447 0.8000 1.0000 2.0000 0.0000 Constraint 374 439 0.8000 1.0000 2.0000 0.0000 Constraint 374 431 0.8000 1.0000 2.0000 0.0000 Constraint 374 422 0.8000 1.0000 2.0000 0.0000 Constraint 374 414 0.8000 1.0000 2.0000 0.0000 Constraint 374 402 0.8000 1.0000 2.0000 0.0000 Constraint 374 393 0.8000 1.0000 2.0000 0.0000 Constraint 374 385 0.8000 1.0000 2.0000 0.0000 Constraint 362 707 0.8000 1.0000 2.0000 0.0000 Constraint 362 692 0.8000 1.0000 2.0000 0.0000 Constraint 362 681 0.8000 1.0000 2.0000 0.0000 Constraint 362 628 0.8000 1.0000 2.0000 0.0000 Constraint 362 619 0.8000 1.0000 2.0000 0.0000 Constraint 362 608 0.8000 1.0000 2.0000 0.0000 Constraint 362 598 0.8000 1.0000 2.0000 0.0000 Constraint 362 587 0.8000 1.0000 2.0000 0.0000 Constraint 362 579 0.8000 1.0000 2.0000 0.0000 Constraint 362 572 0.8000 1.0000 2.0000 0.0000 Constraint 362 556 0.8000 1.0000 2.0000 0.0000 Constraint 362 551 0.8000 1.0000 2.0000 0.0000 Constraint 362 542 0.8000 1.0000 2.0000 0.0000 Constraint 362 533 0.8000 1.0000 2.0000 0.0000 Constraint 362 525 0.8000 1.0000 2.0000 0.0000 Constraint 362 518 0.8000 1.0000 2.0000 0.0000 Constraint 362 507 0.8000 1.0000 2.0000 0.0000 Constraint 362 494 0.8000 1.0000 2.0000 0.0000 Constraint 362 486 0.8000 1.0000 2.0000 0.0000 Constraint 362 478 0.8000 1.0000 2.0000 0.0000 Constraint 362 471 0.8000 1.0000 2.0000 0.0000 Constraint 362 459 0.8000 1.0000 2.0000 0.0000 Constraint 362 452 0.8000 1.0000 2.0000 0.0000 Constraint 362 447 0.8000 1.0000 2.0000 0.0000 Constraint 362 439 0.8000 1.0000 2.0000 0.0000 Constraint 362 431 0.8000 1.0000 2.0000 0.0000 Constraint 362 422 0.8000 1.0000 2.0000 0.0000 Constraint 362 414 0.8000 1.0000 2.0000 0.0000 Constraint 362 402 0.8000 1.0000 2.0000 0.0000 Constraint 362 393 0.8000 1.0000 2.0000 0.0000 Constraint 362 385 0.8000 1.0000 2.0000 0.0000 Constraint 362 374 0.8000 1.0000 2.0000 0.0000 Constraint 352 729 0.8000 1.0000 2.0000 0.0000 Constraint 352 707 0.8000 1.0000 2.0000 0.0000 Constraint 352 692 0.8000 1.0000 2.0000 0.0000 Constraint 352 681 0.8000 1.0000 2.0000 0.0000 Constraint 352 642 0.8000 1.0000 2.0000 0.0000 Constraint 352 635 0.8000 1.0000 2.0000 0.0000 Constraint 352 628 0.8000 1.0000 2.0000 0.0000 Constraint 352 619 0.8000 1.0000 2.0000 0.0000 Constraint 352 608 0.8000 1.0000 2.0000 0.0000 Constraint 352 598 0.8000 1.0000 2.0000 0.0000 Constraint 352 587 0.8000 1.0000 2.0000 0.0000 Constraint 352 579 0.8000 1.0000 2.0000 0.0000 Constraint 352 572 0.8000 1.0000 2.0000 0.0000 Constraint 352 563 0.8000 1.0000 2.0000 0.0000 Constraint 352 556 0.8000 1.0000 2.0000 0.0000 Constraint 352 551 0.8000 1.0000 2.0000 0.0000 Constraint 352 542 0.8000 1.0000 2.0000 0.0000 Constraint 352 533 0.8000 1.0000 2.0000 0.0000 Constraint 352 525 0.8000 1.0000 2.0000 0.0000 Constraint 352 518 0.8000 1.0000 2.0000 0.0000 Constraint 352 507 0.8000 1.0000 2.0000 0.0000 Constraint 352 494 0.8000 1.0000 2.0000 0.0000 Constraint 352 486 0.8000 1.0000 2.0000 0.0000 Constraint 352 478 0.8000 1.0000 2.0000 0.0000 Constraint 352 471 0.8000 1.0000 2.0000 0.0000 Constraint 352 459 0.8000 1.0000 2.0000 0.0000 Constraint 352 452 0.8000 1.0000 2.0000 0.0000 Constraint 352 447 0.8000 1.0000 2.0000 0.0000 Constraint 352 439 0.8000 1.0000 2.0000 0.0000 Constraint 352 431 0.8000 1.0000 2.0000 0.0000 Constraint 352 422 0.8000 1.0000 2.0000 0.0000 Constraint 352 414 0.8000 1.0000 2.0000 0.0000 Constraint 352 402 0.8000 1.0000 2.0000 0.0000 Constraint 352 393 0.8000 1.0000 2.0000 0.0000 Constraint 352 385 0.8000 1.0000 2.0000 0.0000 Constraint 352 374 0.8000 1.0000 2.0000 0.0000 Constraint 352 362 0.8000 1.0000 2.0000 0.0000 Constraint 343 729 0.8000 1.0000 2.0000 0.0000 Constraint 343 723 0.8000 1.0000 2.0000 0.0000 Constraint 343 716 0.8000 1.0000 2.0000 0.0000 Constraint 343 707 0.8000 1.0000 2.0000 0.0000 Constraint 343 692 0.8000 1.0000 2.0000 0.0000 Constraint 343 681 0.8000 1.0000 2.0000 0.0000 Constraint 343 673 0.8000 1.0000 2.0000 0.0000 Constraint 343 665 0.8000 1.0000 2.0000 0.0000 Constraint 343 658 0.8000 1.0000 2.0000 0.0000 Constraint 343 642 0.8000 1.0000 2.0000 0.0000 Constraint 343 635 0.8000 1.0000 2.0000 0.0000 Constraint 343 628 0.8000 1.0000 2.0000 0.0000 Constraint 343 619 0.8000 1.0000 2.0000 0.0000 Constraint 343 608 0.8000 1.0000 2.0000 0.0000 Constraint 343 598 0.8000 1.0000 2.0000 0.0000 Constraint 343 587 0.8000 1.0000 2.0000 0.0000 Constraint 343 579 0.8000 1.0000 2.0000 0.0000 Constraint 343 572 0.8000 1.0000 2.0000 0.0000 Constraint 343 563 0.8000 1.0000 2.0000 0.0000 Constraint 343 556 0.8000 1.0000 2.0000 0.0000 Constraint 343 551 0.8000 1.0000 2.0000 0.0000 Constraint 343 542 0.8000 1.0000 2.0000 0.0000 Constraint 343 533 0.8000 1.0000 2.0000 0.0000 Constraint 343 525 0.8000 1.0000 2.0000 0.0000 Constraint 343 518 0.8000 1.0000 2.0000 0.0000 Constraint 343 507 0.8000 1.0000 2.0000 0.0000 Constraint 343 494 0.8000 1.0000 2.0000 0.0000 Constraint 343 486 0.8000 1.0000 2.0000 0.0000 Constraint 343 478 0.8000 1.0000 2.0000 0.0000 Constraint 343 471 0.8000 1.0000 2.0000 0.0000 Constraint 343 459 0.8000 1.0000 2.0000 0.0000 Constraint 343 452 0.8000 1.0000 2.0000 0.0000 Constraint 343 447 0.8000 1.0000 2.0000 0.0000 Constraint 343 439 0.8000 1.0000 2.0000 0.0000 Constraint 343 431 0.8000 1.0000 2.0000 0.0000 Constraint 343 422 0.8000 1.0000 2.0000 0.0000 Constraint 343 414 0.8000 1.0000 2.0000 0.0000 Constraint 343 402 0.8000 1.0000 2.0000 0.0000 Constraint 343 393 0.8000 1.0000 2.0000 0.0000 Constraint 343 385 0.8000 1.0000 2.0000 0.0000 Constraint 343 374 0.8000 1.0000 2.0000 0.0000 Constraint 343 362 0.8000 1.0000 2.0000 0.0000 Constraint 343 352 0.8000 1.0000 2.0000 0.0000 Constraint 336 729 0.8000 1.0000 2.0000 0.0000 Constraint 336 723 0.8000 1.0000 2.0000 0.0000 Constraint 336 716 0.8000 1.0000 2.0000 0.0000 Constraint 336 707 0.8000 1.0000 2.0000 0.0000 Constraint 336 692 0.8000 1.0000 2.0000 0.0000 Constraint 336 681 0.8000 1.0000 2.0000 0.0000 Constraint 336 642 0.8000 1.0000 2.0000 0.0000 Constraint 336 635 0.8000 1.0000 2.0000 0.0000 Constraint 336 628 0.8000 1.0000 2.0000 0.0000 Constraint 336 619 0.8000 1.0000 2.0000 0.0000 Constraint 336 608 0.8000 1.0000 2.0000 0.0000 Constraint 336 598 0.8000 1.0000 2.0000 0.0000 Constraint 336 587 0.8000 1.0000 2.0000 0.0000 Constraint 336 579 0.8000 1.0000 2.0000 0.0000 Constraint 336 572 0.8000 1.0000 2.0000 0.0000 Constraint 336 563 0.8000 1.0000 2.0000 0.0000 Constraint 336 556 0.8000 1.0000 2.0000 0.0000 Constraint 336 551 0.8000 1.0000 2.0000 0.0000 Constraint 336 542 0.8000 1.0000 2.0000 0.0000 Constraint 336 533 0.8000 1.0000 2.0000 0.0000 Constraint 336 525 0.8000 1.0000 2.0000 0.0000 Constraint 336 518 0.8000 1.0000 2.0000 0.0000 Constraint 336 507 0.8000 1.0000 2.0000 0.0000 Constraint 336 494 0.8000 1.0000 2.0000 0.0000 Constraint 336 486 0.8000 1.0000 2.0000 0.0000 Constraint 336 478 0.8000 1.0000 2.0000 0.0000 Constraint 336 471 0.8000 1.0000 2.0000 0.0000 Constraint 336 459 0.8000 1.0000 2.0000 0.0000 Constraint 336 452 0.8000 1.0000 2.0000 0.0000 Constraint 336 447 0.8000 1.0000 2.0000 0.0000 Constraint 336 439 0.8000 1.0000 2.0000 0.0000 Constraint 336 431 0.8000 1.0000 2.0000 0.0000 Constraint 336 422 0.8000 1.0000 2.0000 0.0000 Constraint 336 414 0.8000 1.0000 2.0000 0.0000 Constraint 336 402 0.8000 1.0000 2.0000 0.0000 Constraint 336 393 0.8000 1.0000 2.0000 0.0000 Constraint 336 385 0.8000 1.0000 2.0000 0.0000 Constraint 336 374 0.8000 1.0000 2.0000 0.0000 Constraint 336 362 0.8000 1.0000 2.0000 0.0000 Constraint 336 352 0.8000 1.0000 2.0000 0.0000 Constraint 336 343 0.8000 1.0000 2.0000 0.0000 Constraint 331 707 0.8000 1.0000 2.0000 0.0000 Constraint 331 642 0.8000 1.0000 2.0000 0.0000 Constraint 331 608 0.8000 1.0000 2.0000 0.0000 Constraint 331 598 0.8000 1.0000 2.0000 0.0000 Constraint 331 587 0.8000 1.0000 2.0000 0.0000 Constraint 331 579 0.8000 1.0000 2.0000 0.0000 Constraint 331 572 0.8000 1.0000 2.0000 0.0000 Constraint 331 563 0.8000 1.0000 2.0000 0.0000 Constraint 331 556 0.8000 1.0000 2.0000 0.0000 Constraint 331 551 0.8000 1.0000 2.0000 0.0000 Constraint 331 542 0.8000 1.0000 2.0000 0.0000 Constraint 331 533 0.8000 1.0000 2.0000 0.0000 Constraint 331 525 0.8000 1.0000 2.0000 0.0000 Constraint 331 518 0.8000 1.0000 2.0000 0.0000 Constraint 331 507 0.8000 1.0000 2.0000 0.0000 Constraint 331 494 0.8000 1.0000 2.0000 0.0000 Constraint 331 486 0.8000 1.0000 2.0000 0.0000 Constraint 331 478 0.8000 1.0000 2.0000 0.0000 Constraint 331 471 0.8000 1.0000 2.0000 0.0000 Constraint 331 459 0.8000 1.0000 2.0000 0.0000 Constraint 331 452 0.8000 1.0000 2.0000 0.0000 Constraint 331 447 0.8000 1.0000 2.0000 0.0000 Constraint 331 439 0.8000 1.0000 2.0000 0.0000 Constraint 331 431 0.8000 1.0000 2.0000 0.0000 Constraint 331 422 0.8000 1.0000 2.0000 0.0000 Constraint 331 414 0.8000 1.0000 2.0000 0.0000 Constraint 331 402 0.8000 1.0000 2.0000 0.0000 Constraint 331 393 0.8000 1.0000 2.0000 0.0000 Constraint 331 385 0.8000 1.0000 2.0000 0.0000 Constraint 331 374 0.8000 1.0000 2.0000 0.0000 Constraint 331 362 0.8000 1.0000 2.0000 0.0000 Constraint 331 352 0.8000 1.0000 2.0000 0.0000 Constraint 331 343 0.8000 1.0000 2.0000 0.0000 Constraint 331 336 0.8000 1.0000 2.0000 0.0000 Constraint 325 729 0.8000 1.0000 2.0000 0.0000 Constraint 325 723 0.8000 1.0000 2.0000 0.0000 Constraint 325 716 0.8000 1.0000 2.0000 0.0000 Constraint 325 707 0.8000 1.0000 2.0000 0.0000 Constraint 325 681 0.8000 1.0000 2.0000 0.0000 Constraint 325 665 0.8000 1.0000 2.0000 0.0000 Constraint 325 658 0.8000 1.0000 2.0000 0.0000 Constraint 325 650 0.8000 1.0000 2.0000 0.0000 Constraint 325 642 0.8000 1.0000 2.0000 0.0000 Constraint 325 635 0.8000 1.0000 2.0000 0.0000 Constraint 325 628 0.8000 1.0000 2.0000 0.0000 Constraint 325 619 0.8000 1.0000 2.0000 0.0000 Constraint 325 608 0.8000 1.0000 2.0000 0.0000 Constraint 325 598 0.8000 1.0000 2.0000 0.0000 Constraint 325 587 0.8000 1.0000 2.0000 0.0000 Constraint 325 579 0.8000 1.0000 2.0000 0.0000 Constraint 325 572 0.8000 1.0000 2.0000 0.0000 Constraint 325 563 0.8000 1.0000 2.0000 0.0000 Constraint 325 556 0.8000 1.0000 2.0000 0.0000 Constraint 325 551 0.8000 1.0000 2.0000 0.0000 Constraint 325 542 0.8000 1.0000 2.0000 0.0000 Constraint 325 533 0.8000 1.0000 2.0000 0.0000 Constraint 325 525 0.8000 1.0000 2.0000 0.0000 Constraint 325 518 0.8000 1.0000 2.0000 0.0000 Constraint 325 507 0.8000 1.0000 2.0000 0.0000 Constraint 325 494 0.8000 1.0000 2.0000 0.0000 Constraint 325 486 0.8000 1.0000 2.0000 0.0000 Constraint 325 478 0.8000 1.0000 2.0000 0.0000 Constraint 325 471 0.8000 1.0000 2.0000 0.0000 Constraint 325 459 0.8000 1.0000 2.0000 0.0000 Constraint 325 452 0.8000 1.0000 2.0000 0.0000 Constraint 325 447 0.8000 1.0000 2.0000 0.0000 Constraint 325 439 0.8000 1.0000 2.0000 0.0000 Constraint 325 431 0.8000 1.0000 2.0000 0.0000 Constraint 325 422 0.8000 1.0000 2.0000 0.0000 Constraint 325 414 0.8000 1.0000 2.0000 0.0000 Constraint 325 402 0.8000 1.0000 2.0000 0.0000 Constraint 325 393 0.8000 1.0000 2.0000 0.0000 Constraint 325 385 0.8000 1.0000 2.0000 0.0000 Constraint 325 374 0.8000 1.0000 2.0000 0.0000 Constraint 325 362 0.8000 1.0000 2.0000 0.0000 Constraint 325 352 0.8000 1.0000 2.0000 0.0000 Constraint 325 343 0.8000 1.0000 2.0000 0.0000 Constraint 325 336 0.8000 1.0000 2.0000 0.0000 Constraint 325 331 0.8000 1.0000 2.0000 0.0000 Constraint 319 729 0.8000 1.0000 2.0000 0.0000 Constraint 319 723 0.8000 1.0000 2.0000 0.0000 Constraint 319 716 0.8000 1.0000 2.0000 0.0000 Constraint 319 707 0.8000 1.0000 2.0000 0.0000 Constraint 319 692 0.8000 1.0000 2.0000 0.0000 Constraint 319 681 0.8000 1.0000 2.0000 0.0000 Constraint 319 673 0.8000 1.0000 2.0000 0.0000 Constraint 319 665 0.8000 1.0000 2.0000 0.0000 Constraint 319 658 0.8000 1.0000 2.0000 0.0000 Constraint 319 650 0.8000 1.0000 2.0000 0.0000 Constraint 319 642 0.8000 1.0000 2.0000 0.0000 Constraint 319 635 0.8000 1.0000 2.0000 0.0000 Constraint 319 628 0.8000 1.0000 2.0000 0.0000 Constraint 319 619 0.8000 1.0000 2.0000 0.0000 Constraint 319 608 0.8000 1.0000 2.0000 0.0000 Constraint 319 598 0.8000 1.0000 2.0000 0.0000 Constraint 319 587 0.8000 1.0000 2.0000 0.0000 Constraint 319 579 0.8000 1.0000 2.0000 0.0000 Constraint 319 572 0.8000 1.0000 2.0000 0.0000 Constraint 319 563 0.8000 1.0000 2.0000 0.0000 Constraint 319 556 0.8000 1.0000 2.0000 0.0000 Constraint 319 551 0.8000 1.0000 2.0000 0.0000 Constraint 319 542 0.8000 1.0000 2.0000 0.0000 Constraint 319 533 0.8000 1.0000 2.0000 0.0000 Constraint 319 525 0.8000 1.0000 2.0000 0.0000 Constraint 319 518 0.8000 1.0000 2.0000 0.0000 Constraint 319 507 0.8000 1.0000 2.0000 0.0000 Constraint 319 494 0.8000 1.0000 2.0000 0.0000 Constraint 319 486 0.8000 1.0000 2.0000 0.0000 Constraint 319 478 0.8000 1.0000 2.0000 0.0000 Constraint 319 471 0.8000 1.0000 2.0000 0.0000 Constraint 319 459 0.8000 1.0000 2.0000 0.0000 Constraint 319 452 0.8000 1.0000 2.0000 0.0000 Constraint 319 447 0.8000 1.0000 2.0000 0.0000 Constraint 319 439 0.8000 1.0000 2.0000 0.0000 Constraint 319 431 0.8000 1.0000 2.0000 0.0000 Constraint 319 422 0.8000 1.0000 2.0000 0.0000 Constraint 319 414 0.8000 1.0000 2.0000 0.0000 Constraint 319 402 0.8000 1.0000 2.0000 0.0000 Constraint 319 393 0.8000 1.0000 2.0000 0.0000 Constraint 319 385 0.8000 1.0000 2.0000 0.0000 Constraint 319 374 0.8000 1.0000 2.0000 0.0000 Constraint 319 362 0.8000 1.0000 2.0000 0.0000 Constraint 319 352 0.8000 1.0000 2.0000 0.0000 Constraint 319 343 0.8000 1.0000 2.0000 0.0000 Constraint 319 336 0.8000 1.0000 2.0000 0.0000 Constraint 319 331 0.8000 1.0000 2.0000 0.0000 Constraint 319 325 0.8000 1.0000 2.0000 0.0000 Constraint 310 729 0.8000 1.0000 2.0000 0.0000 Constraint 310 723 0.8000 1.0000 2.0000 0.0000 Constraint 310 716 0.8000 1.0000 2.0000 0.0000 Constraint 310 707 0.8000 1.0000 2.0000 0.0000 Constraint 310 692 0.8000 1.0000 2.0000 0.0000 Constraint 310 681 0.8000 1.0000 2.0000 0.0000 Constraint 310 673 0.8000 1.0000 2.0000 0.0000 Constraint 310 665 0.8000 1.0000 2.0000 0.0000 Constraint 310 658 0.8000 1.0000 2.0000 0.0000 Constraint 310 650 0.8000 1.0000 2.0000 0.0000 Constraint 310 642 0.8000 1.0000 2.0000 0.0000 Constraint 310 635 0.8000 1.0000 2.0000 0.0000 Constraint 310 628 0.8000 1.0000 2.0000 0.0000 Constraint 310 619 0.8000 1.0000 2.0000 0.0000 Constraint 310 608 0.8000 1.0000 2.0000 0.0000 Constraint 310 598 0.8000 1.0000 2.0000 0.0000 Constraint 310 587 0.8000 1.0000 2.0000 0.0000 Constraint 310 579 0.8000 1.0000 2.0000 0.0000 Constraint 310 572 0.8000 1.0000 2.0000 0.0000 Constraint 310 563 0.8000 1.0000 2.0000 0.0000 Constraint 310 556 0.8000 1.0000 2.0000 0.0000 Constraint 310 551 0.8000 1.0000 2.0000 0.0000 Constraint 310 542 0.8000 1.0000 2.0000 0.0000 Constraint 310 533 0.8000 1.0000 2.0000 0.0000 Constraint 310 525 0.8000 1.0000 2.0000 0.0000 Constraint 310 518 0.8000 1.0000 2.0000 0.0000 Constraint 310 507 0.8000 1.0000 2.0000 0.0000 Constraint 310 494 0.8000 1.0000 2.0000 0.0000 Constraint 310 486 0.8000 1.0000 2.0000 0.0000 Constraint 310 478 0.8000 1.0000 2.0000 0.0000 Constraint 310 471 0.8000 1.0000 2.0000 0.0000 Constraint 310 459 0.8000 1.0000 2.0000 0.0000 Constraint 310 452 0.8000 1.0000 2.0000 0.0000 Constraint 310 447 0.8000 1.0000 2.0000 0.0000 Constraint 310 439 0.8000 1.0000 2.0000 0.0000 Constraint 310 431 0.8000 1.0000 2.0000 0.0000 Constraint 310 422 0.8000 1.0000 2.0000 0.0000 Constraint 310 414 0.8000 1.0000 2.0000 0.0000 Constraint 310 374 0.8000 1.0000 2.0000 0.0000 Constraint 310 362 0.8000 1.0000 2.0000 0.0000 Constraint 310 352 0.8000 1.0000 2.0000 0.0000 Constraint 310 343 0.8000 1.0000 2.0000 0.0000 Constraint 310 336 0.8000 1.0000 2.0000 0.0000 Constraint 310 331 0.8000 1.0000 2.0000 0.0000 Constraint 310 325 0.8000 1.0000 2.0000 0.0000 Constraint 310 319 0.8000 1.0000 2.0000 0.0000 Constraint 303 729 0.8000 1.0000 2.0000 0.0000 Constraint 303 723 0.8000 1.0000 2.0000 0.0000 Constraint 303 716 0.8000 1.0000 2.0000 0.0000 Constraint 303 707 0.8000 1.0000 2.0000 0.0000 Constraint 303 692 0.8000 1.0000 2.0000 0.0000 Constraint 303 681 0.8000 1.0000 2.0000 0.0000 Constraint 303 673 0.8000 1.0000 2.0000 0.0000 Constraint 303 665 0.8000 1.0000 2.0000 0.0000 Constraint 303 658 0.8000 1.0000 2.0000 0.0000 Constraint 303 650 0.8000 1.0000 2.0000 0.0000 Constraint 303 642 0.8000 1.0000 2.0000 0.0000 Constraint 303 635 0.8000 1.0000 2.0000 0.0000 Constraint 303 628 0.8000 1.0000 2.0000 0.0000 Constraint 303 619 0.8000 1.0000 2.0000 0.0000 Constraint 303 608 0.8000 1.0000 2.0000 0.0000 Constraint 303 598 0.8000 1.0000 2.0000 0.0000 Constraint 303 587 0.8000 1.0000 2.0000 0.0000 Constraint 303 579 0.8000 1.0000 2.0000 0.0000 Constraint 303 572 0.8000 1.0000 2.0000 0.0000 Constraint 303 563 0.8000 1.0000 2.0000 0.0000 Constraint 303 556 0.8000 1.0000 2.0000 0.0000 Constraint 303 551 0.8000 1.0000 2.0000 0.0000 Constraint 303 542 0.8000 1.0000 2.0000 0.0000 Constraint 303 533 0.8000 1.0000 2.0000 0.0000 Constraint 303 525 0.8000 1.0000 2.0000 0.0000 Constraint 303 518 0.8000 1.0000 2.0000 0.0000 Constraint 303 507 0.8000 1.0000 2.0000 0.0000 Constraint 303 494 0.8000 1.0000 2.0000 0.0000 Constraint 303 486 0.8000 1.0000 2.0000 0.0000 Constraint 303 478 0.8000 1.0000 2.0000 0.0000 Constraint 303 471 0.8000 1.0000 2.0000 0.0000 Constraint 303 459 0.8000 1.0000 2.0000 0.0000 Constraint 303 452 0.8000 1.0000 2.0000 0.0000 Constraint 303 447 0.8000 1.0000 2.0000 0.0000 Constraint 303 439 0.8000 1.0000 2.0000 0.0000 Constraint 303 431 0.8000 1.0000 2.0000 0.0000 Constraint 303 422 0.8000 1.0000 2.0000 0.0000 Constraint 303 414 0.8000 1.0000 2.0000 0.0000 Constraint 303 393 0.8000 1.0000 2.0000 0.0000 Constraint 303 374 0.8000 1.0000 2.0000 0.0000 Constraint 303 362 0.8000 1.0000 2.0000 0.0000 Constraint 303 352 0.8000 1.0000 2.0000 0.0000 Constraint 303 343 0.8000 1.0000 2.0000 0.0000 Constraint 303 336 0.8000 1.0000 2.0000 0.0000 Constraint 303 331 0.8000 1.0000 2.0000 0.0000 Constraint 303 325 0.8000 1.0000 2.0000 0.0000 Constraint 303 319 0.8000 1.0000 2.0000 0.0000 Constraint 303 310 0.8000 1.0000 2.0000 0.0000 Constraint 295 729 0.8000 1.0000 2.0000 0.0000 Constraint 295 723 0.8000 1.0000 2.0000 0.0000 Constraint 295 716 0.8000 1.0000 2.0000 0.0000 Constraint 295 707 0.8000 1.0000 2.0000 0.0000 Constraint 295 692 0.8000 1.0000 2.0000 0.0000 Constraint 295 681 0.8000 1.0000 2.0000 0.0000 Constraint 295 673 0.8000 1.0000 2.0000 0.0000 Constraint 295 665 0.8000 1.0000 2.0000 0.0000 Constraint 295 658 0.8000 1.0000 2.0000 0.0000 Constraint 295 650 0.8000 1.0000 2.0000 0.0000 Constraint 295 642 0.8000 1.0000 2.0000 0.0000 Constraint 295 635 0.8000 1.0000 2.0000 0.0000 Constraint 295 628 0.8000 1.0000 2.0000 0.0000 Constraint 295 619 0.8000 1.0000 2.0000 0.0000 Constraint 295 608 0.8000 1.0000 2.0000 0.0000 Constraint 295 598 0.8000 1.0000 2.0000 0.0000 Constraint 295 587 0.8000 1.0000 2.0000 0.0000 Constraint 295 579 0.8000 1.0000 2.0000 0.0000 Constraint 295 572 0.8000 1.0000 2.0000 0.0000 Constraint 295 563 0.8000 1.0000 2.0000 0.0000 Constraint 295 556 0.8000 1.0000 2.0000 0.0000 Constraint 295 551 0.8000 1.0000 2.0000 0.0000 Constraint 295 542 0.8000 1.0000 2.0000 0.0000 Constraint 295 533 0.8000 1.0000 2.0000 0.0000 Constraint 295 525 0.8000 1.0000 2.0000 0.0000 Constraint 295 518 0.8000 1.0000 2.0000 0.0000 Constraint 295 507 0.8000 1.0000 2.0000 0.0000 Constraint 295 494 0.8000 1.0000 2.0000 0.0000 Constraint 295 486 0.8000 1.0000 2.0000 0.0000 Constraint 295 478 0.8000 1.0000 2.0000 0.0000 Constraint 295 471 0.8000 1.0000 2.0000 0.0000 Constraint 295 459 0.8000 1.0000 2.0000 0.0000 Constraint 295 452 0.8000 1.0000 2.0000 0.0000 Constraint 295 447 0.8000 1.0000 2.0000 0.0000 Constraint 295 439 0.8000 1.0000 2.0000 0.0000 Constraint 295 431 0.8000 1.0000 2.0000 0.0000 Constraint 295 422 0.8000 1.0000 2.0000 0.0000 Constraint 295 352 0.8000 1.0000 2.0000 0.0000 Constraint 295 343 0.8000 1.0000 2.0000 0.0000 Constraint 295 336 0.8000 1.0000 2.0000 0.0000 Constraint 295 331 0.8000 1.0000 2.0000 0.0000 Constraint 295 325 0.8000 1.0000 2.0000 0.0000 Constraint 295 319 0.8000 1.0000 2.0000 0.0000 Constraint 295 310 0.8000 1.0000 2.0000 0.0000 Constraint 295 303 0.8000 1.0000 2.0000 0.0000 Constraint 289 729 0.8000 1.0000 2.0000 0.0000 Constraint 289 723 0.8000 1.0000 2.0000 0.0000 Constraint 289 716 0.8000 1.0000 2.0000 0.0000 Constraint 289 707 0.8000 1.0000 2.0000 0.0000 Constraint 289 692 0.8000 1.0000 2.0000 0.0000 Constraint 289 681 0.8000 1.0000 2.0000 0.0000 Constraint 289 673 0.8000 1.0000 2.0000 0.0000 Constraint 289 658 0.8000 1.0000 2.0000 0.0000 Constraint 289 650 0.8000 1.0000 2.0000 0.0000 Constraint 289 642 0.8000 1.0000 2.0000 0.0000 Constraint 289 635 0.8000 1.0000 2.0000 0.0000 Constraint 289 628 0.8000 1.0000 2.0000 0.0000 Constraint 289 619 0.8000 1.0000 2.0000 0.0000 Constraint 289 608 0.8000 1.0000 2.0000 0.0000 Constraint 289 598 0.8000 1.0000 2.0000 0.0000 Constraint 289 587 0.8000 1.0000 2.0000 0.0000 Constraint 289 579 0.8000 1.0000 2.0000 0.0000 Constraint 289 572 0.8000 1.0000 2.0000 0.0000 Constraint 289 563 0.8000 1.0000 2.0000 0.0000 Constraint 289 556 0.8000 1.0000 2.0000 0.0000 Constraint 289 551 0.8000 1.0000 2.0000 0.0000 Constraint 289 542 0.8000 1.0000 2.0000 0.0000 Constraint 289 533 0.8000 1.0000 2.0000 0.0000 Constraint 289 525 0.8000 1.0000 2.0000 0.0000 Constraint 289 518 0.8000 1.0000 2.0000 0.0000 Constraint 289 507 0.8000 1.0000 2.0000 0.0000 Constraint 289 494 0.8000 1.0000 2.0000 0.0000 Constraint 289 486 0.8000 1.0000 2.0000 0.0000 Constraint 289 478 0.8000 1.0000 2.0000 0.0000 Constraint 289 471 0.8000 1.0000 2.0000 0.0000 Constraint 289 459 0.8000 1.0000 2.0000 0.0000 Constraint 289 452 0.8000 1.0000 2.0000 0.0000 Constraint 289 447 0.8000 1.0000 2.0000 0.0000 Constraint 289 439 0.8000 1.0000 2.0000 0.0000 Constraint 289 352 0.8000 1.0000 2.0000 0.0000 Constraint 289 343 0.8000 1.0000 2.0000 0.0000 Constraint 289 336 0.8000 1.0000 2.0000 0.0000 Constraint 289 331 0.8000 1.0000 2.0000 0.0000 Constraint 289 325 0.8000 1.0000 2.0000 0.0000 Constraint 289 319 0.8000 1.0000 2.0000 0.0000 Constraint 289 310 0.8000 1.0000 2.0000 0.0000 Constraint 289 303 0.8000 1.0000 2.0000 0.0000 Constraint 289 295 0.8000 1.0000 2.0000 0.0000 Constraint 280 729 0.8000 1.0000 2.0000 0.0000 Constraint 280 707 0.8000 1.0000 2.0000 0.0000 Constraint 280 681 0.8000 1.0000 2.0000 0.0000 Constraint 280 673 0.8000 1.0000 2.0000 0.0000 Constraint 280 665 0.8000 1.0000 2.0000 0.0000 Constraint 280 658 0.8000 1.0000 2.0000 0.0000 Constraint 280 650 0.8000 1.0000 2.0000 0.0000 Constraint 280 642 0.8000 1.0000 2.0000 0.0000 Constraint 280 635 0.8000 1.0000 2.0000 0.0000 Constraint 280 628 0.8000 1.0000 2.0000 0.0000 Constraint 280 619 0.8000 1.0000 2.0000 0.0000 Constraint 280 608 0.8000 1.0000 2.0000 0.0000 Constraint 280 598 0.8000 1.0000 2.0000 0.0000 Constraint 280 587 0.8000 1.0000 2.0000 0.0000 Constraint 280 579 0.8000 1.0000 2.0000 0.0000 Constraint 280 572 0.8000 1.0000 2.0000 0.0000 Constraint 280 563 0.8000 1.0000 2.0000 0.0000 Constraint 280 556 0.8000 1.0000 2.0000 0.0000 Constraint 280 551 0.8000 1.0000 2.0000 0.0000 Constraint 280 542 0.8000 1.0000 2.0000 0.0000 Constraint 280 533 0.8000 1.0000 2.0000 0.0000 Constraint 280 525 0.8000 1.0000 2.0000 0.0000 Constraint 280 518 0.8000 1.0000 2.0000 0.0000 Constraint 280 507 0.8000 1.0000 2.0000 0.0000 Constraint 280 494 0.8000 1.0000 2.0000 0.0000 Constraint 280 486 0.8000 1.0000 2.0000 0.0000 Constraint 280 478 0.8000 1.0000 2.0000 0.0000 Constraint 280 471 0.8000 1.0000 2.0000 0.0000 Constraint 280 459 0.8000 1.0000 2.0000 0.0000 Constraint 280 452 0.8000 1.0000 2.0000 0.0000 Constraint 280 447 0.8000 1.0000 2.0000 0.0000 Constraint 280 439 0.8000 1.0000 2.0000 0.0000 Constraint 280 385 0.8000 1.0000 2.0000 0.0000 Constraint 280 362 0.8000 1.0000 2.0000 0.0000 Constraint 280 352 0.8000 1.0000 2.0000 0.0000 Constraint 280 343 0.8000 1.0000 2.0000 0.0000 Constraint 280 336 0.8000 1.0000 2.0000 0.0000 Constraint 280 331 0.8000 1.0000 2.0000 0.0000 Constraint 280 325 0.8000 1.0000 2.0000 0.0000 Constraint 280 319 0.8000 1.0000 2.0000 0.0000 Constraint 280 310 0.8000 1.0000 2.0000 0.0000 Constraint 280 303 0.8000 1.0000 2.0000 0.0000 Constraint 280 295 0.8000 1.0000 2.0000 0.0000 Constraint 280 289 0.8000 1.0000 2.0000 0.0000 Constraint 273 729 0.8000 1.0000 2.0000 0.0000 Constraint 273 716 0.8000 1.0000 2.0000 0.0000 Constraint 273 707 0.8000 1.0000 2.0000 0.0000 Constraint 273 658 0.8000 1.0000 2.0000 0.0000 Constraint 273 642 0.8000 1.0000 2.0000 0.0000 Constraint 273 635 0.8000 1.0000 2.0000 0.0000 Constraint 273 628 0.8000 1.0000 2.0000 0.0000 Constraint 273 619 0.8000 1.0000 2.0000 0.0000 Constraint 273 608 0.8000 1.0000 2.0000 0.0000 Constraint 273 598 0.8000 1.0000 2.0000 0.0000 Constraint 273 587 0.8000 1.0000 2.0000 0.0000 Constraint 273 572 0.8000 1.0000 2.0000 0.0000 Constraint 273 563 0.8000 1.0000 2.0000 0.0000 Constraint 273 556 0.8000 1.0000 2.0000 0.0000 Constraint 273 542 0.8000 1.0000 2.0000 0.0000 Constraint 273 533 0.8000 1.0000 2.0000 0.0000 Constraint 273 518 0.8000 1.0000 2.0000 0.0000 Constraint 273 494 0.8000 1.0000 2.0000 0.0000 Constraint 273 478 0.8000 1.0000 2.0000 0.0000 Constraint 273 471 0.8000 1.0000 2.0000 0.0000 Constraint 273 459 0.8000 1.0000 2.0000 0.0000 Constraint 273 452 0.8000 1.0000 2.0000 0.0000 Constraint 273 447 0.8000 1.0000 2.0000 0.0000 Constraint 273 439 0.8000 1.0000 2.0000 0.0000 Constraint 273 362 0.8000 1.0000 2.0000 0.0000 Constraint 273 352 0.8000 1.0000 2.0000 0.0000 Constraint 273 331 0.8000 1.0000 2.0000 0.0000 Constraint 273 325 0.8000 1.0000 2.0000 0.0000 Constraint 273 319 0.8000 1.0000 2.0000 0.0000 Constraint 273 310 0.8000 1.0000 2.0000 0.0000 Constraint 273 303 0.8000 1.0000 2.0000 0.0000 Constraint 273 295 0.8000 1.0000 2.0000 0.0000 Constraint 273 289 0.8000 1.0000 2.0000 0.0000 Constraint 273 280 0.8000 1.0000 2.0000 0.0000 Constraint 262 729 0.8000 1.0000 2.0000 0.0000 Constraint 262 707 0.8000 1.0000 2.0000 0.0000 Constraint 262 681 0.8000 1.0000 2.0000 0.0000 Constraint 262 658 0.8000 1.0000 2.0000 0.0000 Constraint 262 650 0.8000 1.0000 2.0000 0.0000 Constraint 262 642 0.8000 1.0000 2.0000 0.0000 Constraint 262 635 0.8000 1.0000 2.0000 0.0000 Constraint 262 628 0.8000 1.0000 2.0000 0.0000 Constraint 262 619 0.8000 1.0000 2.0000 0.0000 Constraint 262 608 0.8000 1.0000 2.0000 0.0000 Constraint 262 598 0.8000 1.0000 2.0000 0.0000 Constraint 262 587 0.8000 1.0000 2.0000 0.0000 Constraint 262 579 0.8000 1.0000 2.0000 0.0000 Constraint 262 572 0.8000 1.0000 2.0000 0.0000 Constraint 262 563 0.8000 1.0000 2.0000 0.0000 Constraint 262 556 0.8000 1.0000 2.0000 0.0000 Constraint 262 551 0.8000 1.0000 2.0000 0.0000 Constraint 262 542 0.8000 1.0000 2.0000 0.0000 Constraint 262 533 0.8000 1.0000 2.0000 0.0000 Constraint 262 518 0.8000 1.0000 2.0000 0.0000 Constraint 262 494 0.8000 1.0000 2.0000 0.0000 Constraint 262 478 0.8000 1.0000 2.0000 0.0000 Constraint 262 471 0.8000 1.0000 2.0000 0.0000 Constraint 262 459 0.8000 1.0000 2.0000 0.0000 Constraint 262 452 0.8000 1.0000 2.0000 0.0000 Constraint 262 447 0.8000 1.0000 2.0000 0.0000 Constraint 262 439 0.8000 1.0000 2.0000 0.0000 Constraint 262 393 0.8000 1.0000 2.0000 0.0000 Constraint 262 385 0.8000 1.0000 2.0000 0.0000 Constraint 262 362 0.8000 1.0000 2.0000 0.0000 Constraint 262 352 0.8000 1.0000 2.0000 0.0000 Constraint 262 343 0.8000 1.0000 2.0000 0.0000 Constraint 262 336 0.8000 1.0000 2.0000 0.0000 Constraint 262 331 0.8000 1.0000 2.0000 0.0000 Constraint 262 325 0.8000 1.0000 2.0000 0.0000 Constraint 262 319 0.8000 1.0000 2.0000 0.0000 Constraint 262 310 0.8000 1.0000 2.0000 0.0000 Constraint 262 303 0.8000 1.0000 2.0000 0.0000 Constraint 262 295 0.8000 1.0000 2.0000 0.0000 Constraint 262 289 0.8000 1.0000 2.0000 0.0000 Constraint 262 280 0.8000 1.0000 2.0000 0.0000 Constraint 262 273 0.8000 1.0000 2.0000 0.0000 Constraint 254 729 0.8000 1.0000 2.0000 0.0000 Constraint 254 723 0.8000 1.0000 2.0000 0.0000 Constraint 254 716 0.8000 1.0000 2.0000 0.0000 Constraint 254 707 0.8000 1.0000 2.0000 0.0000 Constraint 254 681 0.8000 1.0000 2.0000 0.0000 Constraint 254 673 0.8000 1.0000 2.0000 0.0000 Constraint 254 665 0.8000 1.0000 2.0000 0.0000 Constraint 254 658 0.8000 1.0000 2.0000 0.0000 Constraint 254 650 0.8000 1.0000 2.0000 0.0000 Constraint 254 642 0.8000 1.0000 2.0000 0.0000 Constraint 254 635 0.8000 1.0000 2.0000 0.0000 Constraint 254 628 0.8000 1.0000 2.0000 0.0000 Constraint 254 619 0.8000 1.0000 2.0000 0.0000 Constraint 254 608 0.8000 1.0000 2.0000 0.0000 Constraint 254 598 0.8000 1.0000 2.0000 0.0000 Constraint 254 587 0.8000 1.0000 2.0000 0.0000 Constraint 254 563 0.8000 1.0000 2.0000 0.0000 Constraint 254 478 0.8000 1.0000 2.0000 0.0000 Constraint 254 471 0.8000 1.0000 2.0000 0.0000 Constraint 254 459 0.8000 1.0000 2.0000 0.0000 Constraint 254 447 0.8000 1.0000 2.0000 0.0000 Constraint 254 414 0.8000 1.0000 2.0000 0.0000 Constraint 254 402 0.8000 1.0000 2.0000 0.0000 Constraint 254 393 0.8000 1.0000 2.0000 0.0000 Constraint 254 385 0.8000 1.0000 2.0000 0.0000 Constraint 254 374 0.8000 1.0000 2.0000 0.0000 Constraint 254 362 0.8000 1.0000 2.0000 0.0000 Constraint 254 352 0.8000 1.0000 2.0000 0.0000 Constraint 254 343 0.8000 1.0000 2.0000 0.0000 Constraint 254 336 0.8000 1.0000 2.0000 0.0000 Constraint 254 331 0.8000 1.0000 2.0000 0.0000 Constraint 254 325 0.8000 1.0000 2.0000 0.0000 Constraint 254 319 0.8000 1.0000 2.0000 0.0000 Constraint 254 310 0.8000 1.0000 2.0000 0.0000 Constraint 254 303 0.8000 1.0000 2.0000 0.0000 Constraint 254 295 0.8000 1.0000 2.0000 0.0000 Constraint 254 289 0.8000 1.0000 2.0000 0.0000 Constraint 254 280 0.8000 1.0000 2.0000 0.0000 Constraint 254 273 0.8000 1.0000 2.0000 0.0000 Constraint 254 262 0.8000 1.0000 2.0000 0.0000 Constraint 244 729 0.8000 1.0000 2.0000 0.0000 Constraint 244 723 0.8000 1.0000 2.0000 0.0000 Constraint 244 707 0.8000 1.0000 2.0000 0.0000 Constraint 244 665 0.8000 1.0000 2.0000 0.0000 Constraint 244 658 0.8000 1.0000 2.0000 0.0000 Constraint 244 650 0.8000 1.0000 2.0000 0.0000 Constraint 244 642 0.8000 1.0000 2.0000 0.0000 Constraint 244 635 0.8000 1.0000 2.0000 0.0000 Constraint 244 628 0.8000 1.0000 2.0000 0.0000 Constraint 244 619 0.8000 1.0000 2.0000 0.0000 Constraint 244 608 0.8000 1.0000 2.0000 0.0000 Constraint 244 598 0.8000 1.0000 2.0000 0.0000 Constraint 244 587 0.8000 1.0000 2.0000 0.0000 Constraint 244 579 0.8000 1.0000 2.0000 0.0000 Constraint 244 572 0.8000 1.0000 2.0000 0.0000 Constraint 244 563 0.8000 1.0000 2.0000 0.0000 Constraint 244 556 0.8000 1.0000 2.0000 0.0000 Constraint 244 542 0.8000 1.0000 2.0000 0.0000 Constraint 244 533 0.8000 1.0000 2.0000 0.0000 Constraint 244 471 0.8000 1.0000 2.0000 0.0000 Constraint 244 459 0.8000 1.0000 2.0000 0.0000 Constraint 244 452 0.8000 1.0000 2.0000 0.0000 Constraint 244 447 0.8000 1.0000 2.0000 0.0000 Constraint 244 414 0.8000 1.0000 2.0000 0.0000 Constraint 244 402 0.8000 1.0000 2.0000 0.0000 Constraint 244 393 0.8000 1.0000 2.0000 0.0000 Constraint 244 385 0.8000 1.0000 2.0000 0.0000 Constraint 244 374 0.8000 1.0000 2.0000 0.0000 Constraint 244 362 0.8000 1.0000 2.0000 0.0000 Constraint 244 352 0.8000 1.0000 2.0000 0.0000 Constraint 244 343 0.8000 1.0000 2.0000 0.0000 Constraint 244 336 0.8000 1.0000 2.0000 0.0000 Constraint 244 331 0.8000 1.0000 2.0000 0.0000 Constraint 244 325 0.8000 1.0000 2.0000 0.0000 Constraint 244 319 0.8000 1.0000 2.0000 0.0000 Constraint 244 310 0.8000 1.0000 2.0000 0.0000 Constraint 244 303 0.8000 1.0000 2.0000 0.0000 Constraint 244 295 0.8000 1.0000 2.0000 0.0000 Constraint 244 289 0.8000 1.0000 2.0000 0.0000 Constraint 244 280 0.8000 1.0000 2.0000 0.0000 Constraint 244 273 0.8000 1.0000 2.0000 0.0000 Constraint 244 262 0.8000 1.0000 2.0000 0.0000 Constraint 244 254 0.8000 1.0000 2.0000 0.0000 Constraint 237 723 0.8000 1.0000 2.0000 0.0000 Constraint 237 716 0.8000 1.0000 2.0000 0.0000 Constraint 237 707 0.8000 1.0000 2.0000 0.0000 Constraint 237 681 0.8000 1.0000 2.0000 0.0000 Constraint 237 665 0.8000 1.0000 2.0000 0.0000 Constraint 237 658 0.8000 1.0000 2.0000 0.0000 Constraint 237 650 0.8000 1.0000 2.0000 0.0000 Constraint 237 642 0.8000 1.0000 2.0000 0.0000 Constraint 237 635 0.8000 1.0000 2.0000 0.0000 Constraint 237 628 0.8000 1.0000 2.0000 0.0000 Constraint 237 619 0.8000 1.0000 2.0000 0.0000 Constraint 237 608 0.8000 1.0000 2.0000 0.0000 Constraint 237 598 0.8000 1.0000 2.0000 0.0000 Constraint 237 587 0.8000 1.0000 2.0000 0.0000 Constraint 237 579 0.8000 1.0000 2.0000 0.0000 Constraint 237 572 0.8000 1.0000 2.0000 0.0000 Constraint 237 563 0.8000 1.0000 2.0000 0.0000 Constraint 237 556 0.8000 1.0000 2.0000 0.0000 Constraint 237 542 0.8000 1.0000 2.0000 0.0000 Constraint 237 533 0.8000 1.0000 2.0000 0.0000 Constraint 237 478 0.8000 1.0000 2.0000 0.0000 Constraint 237 471 0.8000 1.0000 2.0000 0.0000 Constraint 237 459 0.8000 1.0000 2.0000 0.0000 Constraint 237 452 0.8000 1.0000 2.0000 0.0000 Constraint 237 447 0.8000 1.0000 2.0000 0.0000 Constraint 237 431 0.8000 1.0000 2.0000 0.0000 Constraint 237 414 0.8000 1.0000 2.0000 0.0000 Constraint 237 402 0.8000 1.0000 2.0000 0.0000 Constraint 237 393 0.8000 1.0000 2.0000 0.0000 Constraint 237 385 0.8000 1.0000 2.0000 0.0000 Constraint 237 374 0.8000 1.0000 2.0000 0.0000 Constraint 237 362 0.8000 1.0000 2.0000 0.0000 Constraint 237 352 0.8000 1.0000 2.0000 0.0000 Constraint 237 343 0.8000 1.0000 2.0000 0.0000 Constraint 237 336 0.8000 1.0000 2.0000 0.0000 Constraint 237 331 0.8000 1.0000 2.0000 0.0000 Constraint 237 325 0.8000 1.0000 2.0000 0.0000 Constraint 237 319 0.8000 1.0000 2.0000 0.0000 Constraint 237 310 0.8000 1.0000 2.0000 0.0000 Constraint 237 295 0.8000 1.0000 2.0000 0.0000 Constraint 237 289 0.8000 1.0000 2.0000 0.0000 Constraint 237 280 0.8000 1.0000 2.0000 0.0000 Constraint 237 273 0.8000 1.0000 2.0000 0.0000 Constraint 237 262 0.8000 1.0000 2.0000 0.0000 Constraint 237 254 0.8000 1.0000 2.0000 0.0000 Constraint 237 244 0.8000 1.0000 2.0000 0.0000 Constraint 228 729 0.8000 1.0000 2.0000 0.0000 Constraint 228 723 0.8000 1.0000 2.0000 0.0000 Constraint 228 716 0.8000 1.0000 2.0000 0.0000 Constraint 228 707 0.8000 1.0000 2.0000 0.0000 Constraint 228 665 0.8000 1.0000 2.0000 0.0000 Constraint 228 658 0.8000 1.0000 2.0000 0.0000 Constraint 228 650 0.8000 1.0000 2.0000 0.0000 Constraint 228 642 0.8000 1.0000 2.0000 0.0000 Constraint 228 635 0.8000 1.0000 2.0000 0.0000 Constraint 228 628 0.8000 1.0000 2.0000 0.0000 Constraint 228 619 0.8000 1.0000 2.0000 0.0000 Constraint 228 608 0.8000 1.0000 2.0000 0.0000 Constraint 228 598 0.8000 1.0000 2.0000 0.0000 Constraint 228 579 0.8000 1.0000 2.0000 0.0000 Constraint 228 572 0.8000 1.0000 2.0000 0.0000 Constraint 228 563 0.8000 1.0000 2.0000 0.0000 Constraint 228 556 0.8000 1.0000 2.0000 0.0000 Constraint 228 551 0.8000 1.0000 2.0000 0.0000 Constraint 228 542 0.8000 1.0000 2.0000 0.0000 Constraint 228 533 0.8000 1.0000 2.0000 0.0000 Constraint 228 486 0.8000 1.0000 2.0000 0.0000 Constraint 228 478 0.8000 1.0000 2.0000 0.0000 Constraint 228 471 0.8000 1.0000 2.0000 0.0000 Constraint 228 459 0.8000 1.0000 2.0000 0.0000 Constraint 228 452 0.8000 1.0000 2.0000 0.0000 Constraint 228 447 0.8000 1.0000 2.0000 0.0000 Constraint 228 431 0.8000 1.0000 2.0000 0.0000 Constraint 228 414 0.8000 1.0000 2.0000 0.0000 Constraint 228 402 0.8000 1.0000 2.0000 0.0000 Constraint 228 393 0.8000 1.0000 2.0000 0.0000 Constraint 228 385 0.8000 1.0000 2.0000 0.0000 Constraint 228 374 0.8000 1.0000 2.0000 0.0000 Constraint 228 362 0.8000 1.0000 2.0000 0.0000 Constraint 228 352 0.8000 1.0000 2.0000 0.0000 Constraint 228 343 0.8000 1.0000 2.0000 0.0000 Constraint 228 336 0.8000 1.0000 2.0000 0.0000 Constraint 228 331 0.8000 1.0000 2.0000 0.0000 Constraint 228 325 0.8000 1.0000 2.0000 0.0000 Constraint 228 319 0.8000 1.0000 2.0000 0.0000 Constraint 228 310 0.8000 1.0000 2.0000 0.0000 Constraint 228 303 0.8000 1.0000 2.0000 0.0000 Constraint 228 289 0.8000 1.0000 2.0000 0.0000 Constraint 228 280 0.8000 1.0000 2.0000 0.0000 Constraint 228 273 0.8000 1.0000 2.0000 0.0000 Constraint 228 262 0.8000 1.0000 2.0000 0.0000 Constraint 228 254 0.8000 1.0000 2.0000 0.0000 Constraint 228 244 0.8000 1.0000 2.0000 0.0000 Constraint 228 237 0.8000 1.0000 2.0000 0.0000 Constraint 220 729 0.8000 1.0000 2.0000 0.0000 Constraint 220 723 0.8000 1.0000 2.0000 0.0000 Constraint 220 716 0.8000 1.0000 2.0000 0.0000 Constraint 220 707 0.8000 1.0000 2.0000 0.0000 Constraint 220 681 0.8000 1.0000 2.0000 0.0000 Constraint 220 665 0.8000 1.0000 2.0000 0.0000 Constraint 220 658 0.8000 1.0000 2.0000 0.0000 Constraint 220 650 0.8000 1.0000 2.0000 0.0000 Constraint 220 642 0.8000 1.0000 2.0000 0.0000 Constraint 220 635 0.8000 1.0000 2.0000 0.0000 Constraint 220 628 0.8000 1.0000 2.0000 0.0000 Constraint 220 619 0.8000 1.0000 2.0000 0.0000 Constraint 220 608 0.8000 1.0000 2.0000 0.0000 Constraint 220 598 0.8000 1.0000 2.0000 0.0000 Constraint 220 587 0.8000 1.0000 2.0000 0.0000 Constraint 220 579 0.8000 1.0000 2.0000 0.0000 Constraint 220 572 0.8000 1.0000 2.0000 0.0000 Constraint 220 563 0.8000 1.0000 2.0000 0.0000 Constraint 220 556 0.8000 1.0000 2.0000 0.0000 Constraint 220 533 0.8000 1.0000 2.0000 0.0000 Constraint 220 478 0.8000 1.0000 2.0000 0.0000 Constraint 220 471 0.8000 1.0000 2.0000 0.0000 Constraint 220 459 0.8000 1.0000 2.0000 0.0000 Constraint 220 452 0.8000 1.0000 2.0000 0.0000 Constraint 220 447 0.8000 1.0000 2.0000 0.0000 Constraint 220 439 0.8000 1.0000 2.0000 0.0000 Constraint 220 414 0.8000 1.0000 2.0000 0.0000 Constraint 220 402 0.8000 1.0000 2.0000 0.0000 Constraint 220 393 0.8000 1.0000 2.0000 0.0000 Constraint 220 374 0.8000 1.0000 2.0000 0.0000 Constraint 220 362 0.8000 1.0000 2.0000 0.0000 Constraint 220 352 0.8000 1.0000 2.0000 0.0000 Constraint 220 343 0.8000 1.0000 2.0000 0.0000 Constraint 220 331 0.8000 1.0000 2.0000 0.0000 Constraint 220 325 0.8000 1.0000 2.0000 0.0000 Constraint 220 319 0.8000 1.0000 2.0000 0.0000 Constraint 220 303 0.8000 1.0000 2.0000 0.0000 Constraint 220 280 0.8000 1.0000 2.0000 0.0000 Constraint 220 273 0.8000 1.0000 2.0000 0.0000 Constraint 220 262 0.8000 1.0000 2.0000 0.0000 Constraint 220 254 0.8000 1.0000 2.0000 0.0000 Constraint 220 244 0.8000 1.0000 2.0000 0.0000 Constraint 220 237 0.8000 1.0000 2.0000 0.0000 Constraint 220 228 0.8000 1.0000 2.0000 0.0000 Constraint 211 729 0.8000 1.0000 2.0000 0.0000 Constraint 211 723 0.8000 1.0000 2.0000 0.0000 Constraint 211 716 0.8000 1.0000 2.0000 0.0000 Constraint 211 707 0.8000 1.0000 2.0000 0.0000 Constraint 211 665 0.8000 1.0000 2.0000 0.0000 Constraint 211 658 0.8000 1.0000 2.0000 0.0000 Constraint 211 650 0.8000 1.0000 2.0000 0.0000 Constraint 211 642 0.8000 1.0000 2.0000 0.0000 Constraint 211 635 0.8000 1.0000 2.0000 0.0000 Constraint 211 628 0.8000 1.0000 2.0000 0.0000 Constraint 211 619 0.8000 1.0000 2.0000 0.0000 Constraint 211 579 0.8000 1.0000 2.0000 0.0000 Constraint 211 572 0.8000 1.0000 2.0000 0.0000 Constraint 211 563 0.8000 1.0000 2.0000 0.0000 Constraint 211 478 0.8000 1.0000 2.0000 0.0000 Constraint 211 471 0.8000 1.0000 2.0000 0.0000 Constraint 211 459 0.8000 1.0000 2.0000 0.0000 Constraint 211 452 0.8000 1.0000 2.0000 0.0000 Constraint 211 447 0.8000 1.0000 2.0000 0.0000 Constraint 211 439 0.8000 1.0000 2.0000 0.0000 Constraint 211 414 0.8000 1.0000 2.0000 0.0000 Constraint 211 402 0.8000 1.0000 2.0000 0.0000 Constraint 211 393 0.8000 1.0000 2.0000 0.0000 Constraint 211 385 0.8000 1.0000 2.0000 0.0000 Constraint 211 374 0.8000 1.0000 2.0000 0.0000 Constraint 211 362 0.8000 1.0000 2.0000 0.0000 Constraint 211 352 0.8000 1.0000 2.0000 0.0000 Constraint 211 273 0.8000 1.0000 2.0000 0.0000 Constraint 211 262 0.8000 1.0000 2.0000 0.0000 Constraint 211 254 0.8000 1.0000 2.0000 0.0000 Constraint 211 244 0.8000 1.0000 2.0000 0.0000 Constraint 211 237 0.8000 1.0000 2.0000 0.0000 Constraint 211 228 0.8000 1.0000 2.0000 0.0000 Constraint 211 220 0.8000 1.0000 2.0000 0.0000 Constraint 202 729 0.8000 1.0000 2.0000 0.0000 Constraint 202 723 0.8000 1.0000 2.0000 0.0000 Constraint 202 716 0.8000 1.0000 2.0000 0.0000 Constraint 202 707 0.8000 1.0000 2.0000 0.0000 Constraint 202 673 0.8000 1.0000 2.0000 0.0000 Constraint 202 665 0.8000 1.0000 2.0000 0.0000 Constraint 202 658 0.8000 1.0000 2.0000 0.0000 Constraint 202 650 0.8000 1.0000 2.0000 0.0000 Constraint 202 642 0.8000 1.0000 2.0000 0.0000 Constraint 202 635 0.8000 1.0000 2.0000 0.0000 Constraint 202 628 0.8000 1.0000 2.0000 0.0000 Constraint 202 619 0.8000 1.0000 2.0000 0.0000 Constraint 202 608 0.8000 1.0000 2.0000 0.0000 Constraint 202 598 0.8000 1.0000 2.0000 0.0000 Constraint 202 587 0.8000 1.0000 2.0000 0.0000 Constraint 202 579 0.8000 1.0000 2.0000 0.0000 Constraint 202 572 0.8000 1.0000 2.0000 0.0000 Constraint 202 478 0.8000 1.0000 2.0000 0.0000 Constraint 202 471 0.8000 1.0000 2.0000 0.0000 Constraint 202 459 0.8000 1.0000 2.0000 0.0000 Constraint 202 452 0.8000 1.0000 2.0000 0.0000 Constraint 202 447 0.8000 1.0000 2.0000 0.0000 Constraint 202 439 0.8000 1.0000 2.0000 0.0000 Constraint 202 431 0.8000 1.0000 2.0000 0.0000 Constraint 202 414 0.8000 1.0000 2.0000 0.0000 Constraint 202 393 0.8000 1.0000 2.0000 0.0000 Constraint 202 385 0.8000 1.0000 2.0000 0.0000 Constraint 202 374 0.8000 1.0000 2.0000 0.0000 Constraint 202 362 0.8000 1.0000 2.0000 0.0000 Constraint 202 352 0.8000 1.0000 2.0000 0.0000 Constraint 202 343 0.8000 1.0000 2.0000 0.0000 Constraint 202 319 0.8000 1.0000 2.0000 0.0000 Constraint 202 310 0.8000 1.0000 2.0000 0.0000 Constraint 202 262 0.8000 1.0000 2.0000 0.0000 Constraint 202 254 0.8000 1.0000 2.0000 0.0000 Constraint 202 244 0.8000 1.0000 2.0000 0.0000 Constraint 202 237 0.8000 1.0000 2.0000 0.0000 Constraint 202 228 0.8000 1.0000 2.0000 0.0000 Constraint 202 220 0.8000 1.0000 2.0000 0.0000 Constraint 202 211 0.8000 1.0000 2.0000 0.0000 Constraint 194 729 0.8000 1.0000 2.0000 0.0000 Constraint 194 723 0.8000 1.0000 2.0000 0.0000 Constraint 194 716 0.8000 1.0000 2.0000 0.0000 Constraint 194 707 0.8000 1.0000 2.0000 0.0000 Constraint 194 681 0.8000 1.0000 2.0000 0.0000 Constraint 194 665 0.8000 1.0000 2.0000 0.0000 Constraint 194 658 0.8000 1.0000 2.0000 0.0000 Constraint 194 650 0.8000 1.0000 2.0000 0.0000 Constraint 194 642 0.8000 1.0000 2.0000 0.0000 Constraint 194 635 0.8000 1.0000 2.0000 0.0000 Constraint 194 628 0.8000 1.0000 2.0000 0.0000 Constraint 194 619 0.8000 1.0000 2.0000 0.0000 Constraint 194 598 0.8000 1.0000 2.0000 0.0000 Constraint 194 587 0.8000 1.0000 2.0000 0.0000 Constraint 194 579 0.8000 1.0000 2.0000 0.0000 Constraint 194 572 0.8000 1.0000 2.0000 0.0000 Constraint 194 556 0.8000 1.0000 2.0000 0.0000 Constraint 194 551 0.8000 1.0000 2.0000 0.0000 Constraint 194 486 0.8000 1.0000 2.0000 0.0000 Constraint 194 478 0.8000 1.0000 2.0000 0.0000 Constraint 194 471 0.8000 1.0000 2.0000 0.0000 Constraint 194 459 0.8000 1.0000 2.0000 0.0000 Constraint 194 452 0.8000 1.0000 2.0000 0.0000 Constraint 194 447 0.8000 1.0000 2.0000 0.0000 Constraint 194 414 0.8000 1.0000 2.0000 0.0000 Constraint 194 402 0.8000 1.0000 2.0000 0.0000 Constraint 194 393 0.8000 1.0000 2.0000 0.0000 Constraint 194 374 0.8000 1.0000 2.0000 0.0000 Constraint 194 362 0.8000 1.0000 2.0000 0.0000 Constraint 194 352 0.8000 1.0000 2.0000 0.0000 Constraint 194 319 0.8000 1.0000 2.0000 0.0000 Constraint 194 254 0.8000 1.0000 2.0000 0.0000 Constraint 194 244 0.8000 1.0000 2.0000 0.0000 Constraint 194 237 0.8000 1.0000 2.0000 0.0000 Constraint 194 228 0.8000 1.0000 2.0000 0.0000 Constraint 194 220 0.8000 1.0000 2.0000 0.0000 Constraint 194 211 0.8000 1.0000 2.0000 0.0000 Constraint 194 202 0.8000 1.0000 2.0000 0.0000 Constraint 182 729 0.8000 1.0000 2.0000 0.0000 Constraint 182 723 0.8000 1.0000 2.0000 0.0000 Constraint 182 716 0.8000 1.0000 2.0000 0.0000 Constraint 182 707 0.8000 1.0000 2.0000 0.0000 Constraint 182 665 0.8000 1.0000 2.0000 0.0000 Constraint 182 658 0.8000 1.0000 2.0000 0.0000 Constraint 182 642 0.8000 1.0000 2.0000 0.0000 Constraint 182 628 0.8000 1.0000 2.0000 0.0000 Constraint 182 619 0.8000 1.0000 2.0000 0.0000 Constraint 182 608 0.8000 1.0000 2.0000 0.0000 Constraint 182 598 0.8000 1.0000 2.0000 0.0000 Constraint 182 587 0.8000 1.0000 2.0000 0.0000 Constraint 182 572 0.8000 1.0000 2.0000 0.0000 Constraint 182 556 0.8000 1.0000 2.0000 0.0000 Constraint 182 551 0.8000 1.0000 2.0000 0.0000 Constraint 182 478 0.8000 1.0000 2.0000 0.0000 Constraint 182 471 0.8000 1.0000 2.0000 0.0000 Constraint 182 459 0.8000 1.0000 2.0000 0.0000 Constraint 182 452 0.8000 1.0000 2.0000 0.0000 Constraint 182 447 0.8000 1.0000 2.0000 0.0000 Constraint 182 439 0.8000 1.0000 2.0000 0.0000 Constraint 182 393 0.8000 1.0000 2.0000 0.0000 Constraint 182 385 0.8000 1.0000 2.0000 0.0000 Constraint 182 374 0.8000 1.0000 2.0000 0.0000 Constraint 182 362 0.8000 1.0000 2.0000 0.0000 Constraint 182 352 0.8000 1.0000 2.0000 0.0000 Constraint 182 343 0.8000 1.0000 2.0000 0.0000 Constraint 182 319 0.8000 1.0000 2.0000 0.0000 Constraint 182 310 0.8000 1.0000 2.0000 0.0000 Constraint 182 244 0.8000 1.0000 2.0000 0.0000 Constraint 182 237 0.8000 1.0000 2.0000 0.0000 Constraint 182 228 0.8000 1.0000 2.0000 0.0000 Constraint 182 220 0.8000 1.0000 2.0000 0.0000 Constraint 182 211 0.8000 1.0000 2.0000 0.0000 Constraint 182 202 0.8000 1.0000 2.0000 0.0000 Constraint 182 194 0.8000 1.0000 2.0000 0.0000 Constraint 170 723 0.8000 1.0000 2.0000 0.0000 Constraint 170 716 0.8000 1.0000 2.0000 0.0000 Constraint 170 707 0.8000 1.0000 2.0000 0.0000 Constraint 170 692 0.8000 1.0000 2.0000 0.0000 Constraint 170 681 0.8000 1.0000 2.0000 0.0000 Constraint 170 673 0.8000 1.0000 2.0000 0.0000 Constraint 170 665 0.8000 1.0000 2.0000 0.0000 Constraint 170 658 0.8000 1.0000 2.0000 0.0000 Constraint 170 650 0.8000 1.0000 2.0000 0.0000 Constraint 170 642 0.8000 1.0000 2.0000 0.0000 Constraint 170 635 0.8000 1.0000 2.0000 0.0000 Constraint 170 628 0.8000 1.0000 2.0000 0.0000 Constraint 170 619 0.8000 1.0000 2.0000 0.0000 Constraint 170 598 0.8000 1.0000 2.0000 0.0000 Constraint 170 478 0.8000 1.0000 2.0000 0.0000 Constraint 170 471 0.8000 1.0000 2.0000 0.0000 Constraint 170 459 0.8000 1.0000 2.0000 0.0000 Constraint 170 452 0.8000 1.0000 2.0000 0.0000 Constraint 170 447 0.8000 1.0000 2.0000 0.0000 Constraint 170 439 0.8000 1.0000 2.0000 0.0000 Constraint 170 414 0.8000 1.0000 2.0000 0.0000 Constraint 170 374 0.8000 1.0000 2.0000 0.0000 Constraint 170 362 0.8000 1.0000 2.0000 0.0000 Constraint 170 352 0.8000 1.0000 2.0000 0.0000 Constraint 170 319 0.8000 1.0000 2.0000 0.0000 Constraint 170 310 0.8000 1.0000 2.0000 0.0000 Constraint 170 237 0.8000 1.0000 2.0000 0.0000 Constraint 170 228 0.8000 1.0000 2.0000 0.0000 Constraint 170 220 0.8000 1.0000 2.0000 0.0000 Constraint 170 211 0.8000 1.0000 2.0000 0.0000 Constraint 170 202 0.8000 1.0000 2.0000 0.0000 Constraint 170 194 0.8000 1.0000 2.0000 0.0000 Constraint 170 182 0.8000 1.0000 2.0000 0.0000 Constraint 161 729 0.8000 1.0000 2.0000 0.0000 Constraint 161 707 0.8000 1.0000 2.0000 0.0000 Constraint 161 692 0.8000 1.0000 2.0000 0.0000 Constraint 161 681 0.8000 1.0000 2.0000 0.0000 Constraint 161 673 0.8000 1.0000 2.0000 0.0000 Constraint 161 665 0.8000 1.0000 2.0000 0.0000 Constraint 161 658 0.8000 1.0000 2.0000 0.0000 Constraint 161 650 0.8000 1.0000 2.0000 0.0000 Constraint 161 642 0.8000 1.0000 2.0000 0.0000 Constraint 161 628 0.8000 1.0000 2.0000 0.0000 Constraint 161 619 0.8000 1.0000 2.0000 0.0000 Constraint 161 598 0.8000 1.0000 2.0000 0.0000 Constraint 161 563 0.8000 1.0000 2.0000 0.0000 Constraint 161 556 0.8000 1.0000 2.0000 0.0000 Constraint 161 542 0.8000 1.0000 2.0000 0.0000 Constraint 161 533 0.8000 1.0000 2.0000 0.0000 Constraint 161 494 0.8000 1.0000 2.0000 0.0000 Constraint 161 486 0.8000 1.0000 2.0000 0.0000 Constraint 161 478 0.8000 1.0000 2.0000 0.0000 Constraint 161 471 0.8000 1.0000 2.0000 0.0000 Constraint 161 459 0.8000 1.0000 2.0000 0.0000 Constraint 161 452 0.8000 1.0000 2.0000 0.0000 Constraint 161 447 0.8000 1.0000 2.0000 0.0000 Constraint 161 439 0.8000 1.0000 2.0000 0.0000 Constraint 161 414 0.8000 1.0000 2.0000 0.0000 Constraint 161 402 0.8000 1.0000 2.0000 0.0000 Constraint 161 393 0.8000 1.0000 2.0000 0.0000 Constraint 161 374 0.8000 1.0000 2.0000 0.0000 Constraint 161 362 0.8000 1.0000 2.0000 0.0000 Constraint 161 352 0.8000 1.0000 2.0000 0.0000 Constraint 161 319 0.8000 1.0000 2.0000 0.0000 Constraint 161 310 0.8000 1.0000 2.0000 0.0000 Constraint 161 220 0.8000 1.0000 2.0000 0.0000 Constraint 161 211 0.8000 1.0000 2.0000 0.0000 Constraint 161 202 0.8000 1.0000 2.0000 0.0000 Constraint 161 194 0.8000 1.0000 2.0000 0.0000 Constraint 161 182 0.8000 1.0000 2.0000 0.0000 Constraint 161 170 0.8000 1.0000 2.0000 0.0000 Constraint 153 729 0.8000 1.0000 2.0000 0.0000 Constraint 153 723 0.8000 1.0000 2.0000 0.0000 Constraint 153 716 0.8000 1.0000 2.0000 0.0000 Constraint 153 707 0.8000 1.0000 2.0000 0.0000 Constraint 153 692 0.8000 1.0000 2.0000 0.0000 Constraint 153 681 0.8000 1.0000 2.0000 0.0000 Constraint 153 673 0.8000 1.0000 2.0000 0.0000 Constraint 153 665 0.8000 1.0000 2.0000 0.0000 Constraint 153 658 0.8000 1.0000 2.0000 0.0000 Constraint 153 650 0.8000 1.0000 2.0000 0.0000 Constraint 153 642 0.8000 1.0000 2.0000 0.0000 Constraint 153 635 0.8000 1.0000 2.0000 0.0000 Constraint 153 628 0.8000 1.0000 2.0000 0.0000 Constraint 153 619 0.8000 1.0000 2.0000 0.0000 Constraint 153 572 0.8000 1.0000 2.0000 0.0000 Constraint 153 563 0.8000 1.0000 2.0000 0.0000 Constraint 153 542 0.8000 1.0000 2.0000 0.0000 Constraint 153 533 0.8000 1.0000 2.0000 0.0000 Constraint 153 518 0.8000 1.0000 2.0000 0.0000 Constraint 153 494 0.8000 1.0000 2.0000 0.0000 Constraint 153 478 0.8000 1.0000 2.0000 0.0000 Constraint 153 471 0.8000 1.0000 2.0000 0.0000 Constraint 153 459 0.8000 1.0000 2.0000 0.0000 Constraint 153 447 0.8000 1.0000 2.0000 0.0000 Constraint 153 439 0.8000 1.0000 2.0000 0.0000 Constraint 153 414 0.8000 1.0000 2.0000 0.0000 Constraint 153 402 0.8000 1.0000 2.0000 0.0000 Constraint 153 393 0.8000 1.0000 2.0000 0.0000 Constraint 153 385 0.8000 1.0000 2.0000 0.0000 Constraint 153 374 0.8000 1.0000 2.0000 0.0000 Constraint 153 362 0.8000 1.0000 2.0000 0.0000 Constraint 153 352 0.8000 1.0000 2.0000 0.0000 Constraint 153 319 0.8000 1.0000 2.0000 0.0000 Constraint 153 220 0.8000 1.0000 2.0000 0.0000 Constraint 153 211 0.8000 1.0000 2.0000 0.0000 Constraint 153 202 0.8000 1.0000 2.0000 0.0000 Constraint 153 194 0.8000 1.0000 2.0000 0.0000 Constraint 153 182 0.8000 1.0000 2.0000 0.0000 Constraint 153 170 0.8000 1.0000 2.0000 0.0000 Constraint 153 161 0.8000 1.0000 2.0000 0.0000 Constraint 146 729 0.8000 1.0000 2.0000 0.0000 Constraint 146 723 0.8000 1.0000 2.0000 0.0000 Constraint 146 716 0.8000 1.0000 2.0000 0.0000 Constraint 146 707 0.8000 1.0000 2.0000 0.0000 Constraint 146 692 0.8000 1.0000 2.0000 0.0000 Constraint 146 681 0.8000 1.0000 2.0000 0.0000 Constraint 146 673 0.8000 1.0000 2.0000 0.0000 Constraint 146 665 0.8000 1.0000 2.0000 0.0000 Constraint 146 658 0.8000 1.0000 2.0000 0.0000 Constraint 146 650 0.8000 1.0000 2.0000 0.0000 Constraint 146 642 0.8000 1.0000 2.0000 0.0000 Constraint 146 628 0.8000 1.0000 2.0000 0.0000 Constraint 146 619 0.8000 1.0000 2.0000 0.0000 Constraint 146 608 0.8000 1.0000 2.0000 0.0000 Constraint 146 598 0.8000 1.0000 2.0000 0.0000 Constraint 146 572 0.8000 1.0000 2.0000 0.0000 Constraint 146 563 0.8000 1.0000 2.0000 0.0000 Constraint 146 551 0.8000 1.0000 2.0000 0.0000 Constraint 146 533 0.8000 1.0000 2.0000 0.0000 Constraint 146 494 0.8000 1.0000 2.0000 0.0000 Constraint 146 486 0.8000 1.0000 2.0000 0.0000 Constraint 146 478 0.8000 1.0000 2.0000 0.0000 Constraint 146 471 0.8000 1.0000 2.0000 0.0000 Constraint 146 459 0.8000 1.0000 2.0000 0.0000 Constraint 146 452 0.8000 1.0000 2.0000 0.0000 Constraint 146 447 0.8000 1.0000 2.0000 0.0000 Constraint 146 439 0.8000 1.0000 2.0000 0.0000 Constraint 146 431 0.8000 1.0000 2.0000 0.0000 Constraint 146 422 0.8000 1.0000 2.0000 0.0000 Constraint 146 414 0.8000 1.0000 2.0000 0.0000 Constraint 146 393 0.8000 1.0000 2.0000 0.0000 Constraint 146 385 0.8000 1.0000 2.0000 0.0000 Constraint 146 374 0.8000 1.0000 2.0000 0.0000 Constraint 146 362 0.8000 1.0000 2.0000 0.0000 Constraint 146 352 0.8000 1.0000 2.0000 0.0000 Constraint 146 319 0.8000 1.0000 2.0000 0.0000 Constraint 146 244 0.8000 1.0000 2.0000 0.0000 Constraint 146 237 0.8000 1.0000 2.0000 0.0000 Constraint 146 228 0.8000 1.0000 2.0000 0.0000 Constraint 146 220 0.8000 1.0000 2.0000 0.0000 Constraint 146 211 0.8000 1.0000 2.0000 0.0000 Constraint 146 202 0.8000 1.0000 2.0000 0.0000 Constraint 146 194 0.8000 1.0000 2.0000 0.0000 Constraint 146 182 0.8000 1.0000 2.0000 0.0000 Constraint 146 170 0.8000 1.0000 2.0000 0.0000 Constraint 146 161 0.8000 1.0000 2.0000 0.0000 Constraint 146 153 0.8000 1.0000 2.0000 0.0000 Constraint 138 729 0.8000 1.0000 2.0000 0.0000 Constraint 138 723 0.8000 1.0000 2.0000 0.0000 Constraint 138 716 0.8000 1.0000 2.0000 0.0000 Constraint 138 707 0.8000 1.0000 2.0000 0.0000 Constraint 138 692 0.8000 1.0000 2.0000 0.0000 Constraint 138 681 0.8000 1.0000 2.0000 0.0000 Constraint 138 673 0.8000 1.0000 2.0000 0.0000 Constraint 138 665 0.8000 1.0000 2.0000 0.0000 Constraint 138 642 0.8000 1.0000 2.0000 0.0000 Constraint 138 628 0.8000 1.0000 2.0000 0.0000 Constraint 138 619 0.8000 1.0000 2.0000 0.0000 Constraint 138 608 0.8000 1.0000 2.0000 0.0000 Constraint 138 598 0.8000 1.0000 2.0000 0.0000 Constraint 138 572 0.8000 1.0000 2.0000 0.0000 Constraint 138 563 0.8000 1.0000 2.0000 0.0000 Constraint 138 533 0.8000 1.0000 2.0000 0.0000 Constraint 138 518 0.8000 1.0000 2.0000 0.0000 Constraint 138 494 0.8000 1.0000 2.0000 0.0000 Constraint 138 486 0.8000 1.0000 2.0000 0.0000 Constraint 138 478 0.8000 1.0000 2.0000 0.0000 Constraint 138 471 0.8000 1.0000 2.0000 0.0000 Constraint 138 459 0.8000 1.0000 2.0000 0.0000 Constraint 138 452 0.8000 1.0000 2.0000 0.0000 Constraint 138 447 0.8000 1.0000 2.0000 0.0000 Constraint 138 439 0.8000 1.0000 2.0000 0.0000 Constraint 138 422 0.8000 1.0000 2.0000 0.0000 Constraint 138 414 0.8000 1.0000 2.0000 0.0000 Constraint 138 362 0.8000 1.0000 2.0000 0.0000 Constraint 138 244 0.8000 1.0000 2.0000 0.0000 Constraint 138 237 0.8000 1.0000 2.0000 0.0000 Constraint 138 228 0.8000 1.0000 2.0000 0.0000 Constraint 138 220 0.8000 1.0000 2.0000 0.0000 Constraint 138 194 0.8000 1.0000 2.0000 0.0000 Constraint 138 182 0.8000 1.0000 2.0000 0.0000 Constraint 138 170 0.8000 1.0000 2.0000 0.0000 Constraint 138 161 0.8000 1.0000 2.0000 0.0000 Constraint 138 153 0.8000 1.0000 2.0000 0.0000 Constraint 138 146 0.8000 1.0000 2.0000 0.0000 Constraint 126 729 0.8000 1.0000 2.0000 0.0000 Constraint 126 723 0.8000 1.0000 2.0000 0.0000 Constraint 126 716 0.8000 1.0000 2.0000 0.0000 Constraint 126 707 0.8000 1.0000 2.0000 0.0000 Constraint 126 692 0.8000 1.0000 2.0000 0.0000 Constraint 126 681 0.8000 1.0000 2.0000 0.0000 Constraint 126 673 0.8000 1.0000 2.0000 0.0000 Constraint 126 665 0.8000 1.0000 2.0000 0.0000 Constraint 126 628 0.8000 1.0000 2.0000 0.0000 Constraint 126 619 0.8000 1.0000 2.0000 0.0000 Constraint 126 598 0.8000 1.0000 2.0000 0.0000 Constraint 126 556 0.8000 1.0000 2.0000 0.0000 Constraint 126 533 0.8000 1.0000 2.0000 0.0000 Constraint 126 518 0.8000 1.0000 2.0000 0.0000 Constraint 126 494 0.8000 1.0000 2.0000 0.0000 Constraint 126 486 0.8000 1.0000 2.0000 0.0000 Constraint 126 478 0.8000 1.0000 2.0000 0.0000 Constraint 126 471 0.8000 1.0000 2.0000 0.0000 Constraint 126 447 0.8000 1.0000 2.0000 0.0000 Constraint 126 439 0.8000 1.0000 2.0000 0.0000 Constraint 126 414 0.8000 1.0000 2.0000 0.0000 Constraint 126 402 0.8000 1.0000 2.0000 0.0000 Constraint 126 393 0.8000 1.0000 2.0000 0.0000 Constraint 126 362 0.8000 1.0000 2.0000 0.0000 Constraint 126 319 0.8000 1.0000 2.0000 0.0000 Constraint 126 310 0.8000 1.0000 2.0000 0.0000 Constraint 126 289 0.8000 1.0000 2.0000 0.0000 Constraint 126 280 0.8000 1.0000 2.0000 0.0000 Constraint 126 228 0.8000 1.0000 2.0000 0.0000 Constraint 126 220 0.8000 1.0000 2.0000 0.0000 Constraint 126 194 0.8000 1.0000 2.0000 0.0000 Constraint 126 182 0.8000 1.0000 2.0000 0.0000 Constraint 126 170 0.8000 1.0000 2.0000 0.0000 Constraint 126 161 0.8000 1.0000 2.0000 0.0000 Constraint 126 153 0.8000 1.0000 2.0000 0.0000 Constraint 126 146 0.8000 1.0000 2.0000 0.0000 Constraint 126 138 0.8000 1.0000 2.0000 0.0000 Constraint 113 729 0.8000 1.0000 2.0000 0.0000 Constraint 113 723 0.8000 1.0000 2.0000 0.0000 Constraint 113 716 0.8000 1.0000 2.0000 0.0000 Constraint 113 707 0.8000 1.0000 2.0000 0.0000 Constraint 113 692 0.8000 1.0000 2.0000 0.0000 Constraint 113 681 0.8000 1.0000 2.0000 0.0000 Constraint 113 673 0.8000 1.0000 2.0000 0.0000 Constraint 113 665 0.8000 1.0000 2.0000 0.0000 Constraint 113 658 0.8000 1.0000 2.0000 0.0000 Constraint 113 650 0.8000 1.0000 2.0000 0.0000 Constraint 113 642 0.8000 1.0000 2.0000 0.0000 Constraint 113 572 0.8000 1.0000 2.0000 0.0000 Constraint 113 563 0.8000 1.0000 2.0000 0.0000 Constraint 113 542 0.8000 1.0000 2.0000 0.0000 Constraint 113 533 0.8000 1.0000 2.0000 0.0000 Constraint 113 518 0.8000 1.0000 2.0000 0.0000 Constraint 113 494 0.8000 1.0000 2.0000 0.0000 Constraint 113 486 0.8000 1.0000 2.0000 0.0000 Constraint 113 478 0.8000 1.0000 2.0000 0.0000 Constraint 113 471 0.8000 1.0000 2.0000 0.0000 Constraint 113 459 0.8000 1.0000 2.0000 0.0000 Constraint 113 452 0.8000 1.0000 2.0000 0.0000 Constraint 113 447 0.8000 1.0000 2.0000 0.0000 Constraint 113 439 0.8000 1.0000 2.0000 0.0000 Constraint 113 422 0.8000 1.0000 2.0000 0.0000 Constraint 113 414 0.8000 1.0000 2.0000 0.0000 Constraint 113 402 0.8000 1.0000 2.0000 0.0000 Constraint 113 393 0.8000 1.0000 2.0000 0.0000 Constraint 113 385 0.8000 1.0000 2.0000 0.0000 Constraint 113 374 0.8000 1.0000 2.0000 0.0000 Constraint 113 362 0.8000 1.0000 2.0000 0.0000 Constraint 113 352 0.8000 1.0000 2.0000 0.0000 Constraint 113 343 0.8000 1.0000 2.0000 0.0000 Constraint 113 310 0.8000 1.0000 2.0000 0.0000 Constraint 113 295 0.8000 1.0000 2.0000 0.0000 Constraint 113 289 0.8000 1.0000 2.0000 0.0000 Constraint 113 237 0.8000 1.0000 2.0000 0.0000 Constraint 113 228 0.8000 1.0000 2.0000 0.0000 Constraint 113 220 0.8000 1.0000 2.0000 0.0000 Constraint 113 211 0.8000 1.0000 2.0000 0.0000 Constraint 113 170 0.8000 1.0000 2.0000 0.0000 Constraint 113 161 0.8000 1.0000 2.0000 0.0000 Constraint 113 153 0.8000 1.0000 2.0000 0.0000 Constraint 113 146 0.8000 1.0000 2.0000 0.0000 Constraint 113 138 0.8000 1.0000 2.0000 0.0000 Constraint 113 126 0.8000 1.0000 2.0000 0.0000 Constraint 106 729 0.8000 1.0000 2.0000 0.0000 Constraint 106 723 0.8000 1.0000 2.0000 0.0000 Constraint 106 716 0.8000 1.0000 2.0000 0.0000 Constraint 106 707 0.8000 1.0000 2.0000 0.0000 Constraint 106 692 0.8000 1.0000 2.0000 0.0000 Constraint 106 681 0.8000 1.0000 2.0000 0.0000 Constraint 106 673 0.8000 1.0000 2.0000 0.0000 Constraint 106 665 0.8000 1.0000 2.0000 0.0000 Constraint 106 658 0.8000 1.0000 2.0000 0.0000 Constraint 106 650 0.8000 1.0000 2.0000 0.0000 Constraint 106 642 0.8000 1.0000 2.0000 0.0000 Constraint 106 572 0.8000 1.0000 2.0000 0.0000 Constraint 106 563 0.8000 1.0000 2.0000 0.0000 Constraint 106 556 0.8000 1.0000 2.0000 0.0000 Constraint 106 542 0.8000 1.0000 2.0000 0.0000 Constraint 106 533 0.8000 1.0000 2.0000 0.0000 Constraint 106 494 0.8000 1.0000 2.0000 0.0000 Constraint 106 486 0.8000 1.0000 2.0000 0.0000 Constraint 106 478 0.8000 1.0000 2.0000 0.0000 Constraint 106 471 0.8000 1.0000 2.0000 0.0000 Constraint 106 459 0.8000 1.0000 2.0000 0.0000 Constraint 106 452 0.8000 1.0000 2.0000 0.0000 Constraint 106 447 0.8000 1.0000 2.0000 0.0000 Constraint 106 439 0.8000 1.0000 2.0000 0.0000 Constraint 106 422 0.8000 1.0000 2.0000 0.0000 Constraint 106 414 0.8000 1.0000 2.0000 0.0000 Constraint 106 402 0.8000 1.0000 2.0000 0.0000 Constraint 106 393 0.8000 1.0000 2.0000 0.0000 Constraint 106 385 0.8000 1.0000 2.0000 0.0000 Constraint 106 374 0.8000 1.0000 2.0000 0.0000 Constraint 106 343 0.8000 1.0000 2.0000 0.0000 Constraint 106 336 0.8000 1.0000 2.0000 0.0000 Constraint 106 310 0.8000 1.0000 2.0000 0.0000 Constraint 106 237 0.8000 1.0000 2.0000 0.0000 Constraint 106 170 0.8000 1.0000 2.0000 0.0000 Constraint 106 161 0.8000 1.0000 2.0000 0.0000 Constraint 106 153 0.8000 1.0000 2.0000 0.0000 Constraint 106 146 0.8000 1.0000 2.0000 0.0000 Constraint 106 138 0.8000 1.0000 2.0000 0.0000 Constraint 106 126 0.8000 1.0000 2.0000 0.0000 Constraint 106 113 0.8000 1.0000 2.0000 0.0000 Constraint 98 729 0.8000 1.0000 2.0000 0.0000 Constraint 98 723 0.8000 1.0000 2.0000 0.0000 Constraint 98 716 0.8000 1.0000 2.0000 0.0000 Constraint 98 707 0.8000 1.0000 2.0000 0.0000 Constraint 98 692 0.8000 1.0000 2.0000 0.0000 Constraint 98 681 0.8000 1.0000 2.0000 0.0000 Constraint 98 673 0.8000 1.0000 2.0000 0.0000 Constraint 98 665 0.8000 1.0000 2.0000 0.0000 Constraint 98 658 0.8000 1.0000 2.0000 0.0000 Constraint 98 579 0.8000 1.0000 2.0000 0.0000 Constraint 98 572 0.8000 1.0000 2.0000 0.0000 Constraint 98 563 0.8000 1.0000 2.0000 0.0000 Constraint 98 556 0.8000 1.0000 2.0000 0.0000 Constraint 98 551 0.8000 1.0000 2.0000 0.0000 Constraint 98 542 0.8000 1.0000 2.0000 0.0000 Constraint 98 533 0.8000 1.0000 2.0000 0.0000 Constraint 98 525 0.8000 1.0000 2.0000 0.0000 Constraint 98 518 0.8000 1.0000 2.0000 0.0000 Constraint 98 507 0.8000 1.0000 2.0000 0.0000 Constraint 98 494 0.8000 1.0000 2.0000 0.0000 Constraint 98 486 0.8000 1.0000 2.0000 0.0000 Constraint 98 478 0.8000 1.0000 2.0000 0.0000 Constraint 98 471 0.8000 1.0000 2.0000 0.0000 Constraint 98 459 0.8000 1.0000 2.0000 0.0000 Constraint 98 452 0.8000 1.0000 2.0000 0.0000 Constraint 98 447 0.8000 1.0000 2.0000 0.0000 Constraint 98 439 0.8000 1.0000 2.0000 0.0000 Constraint 98 431 0.8000 1.0000 2.0000 0.0000 Constraint 98 422 0.8000 1.0000 2.0000 0.0000 Constraint 98 414 0.8000 1.0000 2.0000 0.0000 Constraint 98 402 0.8000 1.0000 2.0000 0.0000 Constraint 98 393 0.8000 1.0000 2.0000 0.0000 Constraint 98 374 0.8000 1.0000 2.0000 0.0000 Constraint 98 262 0.8000 1.0000 2.0000 0.0000 Constraint 98 254 0.8000 1.0000 2.0000 0.0000 Constraint 98 244 0.8000 1.0000 2.0000 0.0000 Constraint 98 237 0.8000 1.0000 2.0000 0.0000 Constraint 98 161 0.8000 1.0000 2.0000 0.0000 Constraint 98 153 0.8000 1.0000 2.0000 0.0000 Constraint 98 146 0.8000 1.0000 2.0000 0.0000 Constraint 98 138 0.8000 1.0000 2.0000 0.0000 Constraint 98 126 0.8000 1.0000 2.0000 0.0000 Constraint 98 113 0.8000 1.0000 2.0000 0.0000 Constraint 98 106 0.8000 1.0000 2.0000 0.0000 Constraint 89 729 0.8000 1.0000 2.0000 0.0000 Constraint 89 723 0.8000 1.0000 2.0000 0.0000 Constraint 89 716 0.8000 1.0000 2.0000 0.0000 Constraint 89 707 0.8000 1.0000 2.0000 0.0000 Constraint 89 692 0.8000 1.0000 2.0000 0.0000 Constraint 89 681 0.8000 1.0000 2.0000 0.0000 Constraint 89 673 0.8000 1.0000 2.0000 0.0000 Constraint 89 665 0.8000 1.0000 2.0000 0.0000 Constraint 89 658 0.8000 1.0000 2.0000 0.0000 Constraint 89 598 0.8000 1.0000 2.0000 0.0000 Constraint 89 572 0.8000 1.0000 2.0000 0.0000 Constraint 89 563 0.8000 1.0000 2.0000 0.0000 Constraint 89 556 0.8000 1.0000 2.0000 0.0000 Constraint 89 551 0.8000 1.0000 2.0000 0.0000 Constraint 89 542 0.8000 1.0000 2.0000 0.0000 Constraint 89 533 0.8000 1.0000 2.0000 0.0000 Constraint 89 525 0.8000 1.0000 2.0000 0.0000 Constraint 89 518 0.8000 1.0000 2.0000 0.0000 Constraint 89 507 0.8000 1.0000 2.0000 0.0000 Constraint 89 494 0.8000 1.0000 2.0000 0.0000 Constraint 89 486 0.8000 1.0000 2.0000 0.0000 Constraint 89 478 0.8000 1.0000 2.0000 0.0000 Constraint 89 471 0.8000 1.0000 2.0000 0.0000 Constraint 89 452 0.8000 1.0000 2.0000 0.0000 Constraint 89 447 0.8000 1.0000 2.0000 0.0000 Constraint 89 439 0.8000 1.0000 2.0000 0.0000 Constraint 89 431 0.8000 1.0000 2.0000 0.0000 Constraint 89 422 0.8000 1.0000 2.0000 0.0000 Constraint 89 414 0.8000 1.0000 2.0000 0.0000 Constraint 89 402 0.8000 1.0000 2.0000 0.0000 Constraint 89 393 0.8000 1.0000 2.0000 0.0000 Constraint 89 343 0.8000 1.0000 2.0000 0.0000 Constraint 89 319 0.8000 1.0000 2.0000 0.0000 Constraint 89 262 0.8000 1.0000 2.0000 0.0000 Constraint 89 254 0.8000 1.0000 2.0000 0.0000 Constraint 89 170 0.8000 1.0000 2.0000 0.0000 Constraint 89 161 0.8000 1.0000 2.0000 0.0000 Constraint 89 146 0.8000 1.0000 2.0000 0.0000 Constraint 89 138 0.8000 1.0000 2.0000 0.0000 Constraint 89 126 0.8000 1.0000 2.0000 0.0000 Constraint 89 113 0.8000 1.0000 2.0000 0.0000 Constraint 89 106 0.8000 1.0000 2.0000 0.0000 Constraint 89 98 0.8000 1.0000 2.0000 0.0000 Constraint 82 729 0.8000 1.0000 2.0000 0.0000 Constraint 82 723 0.8000 1.0000 2.0000 0.0000 Constraint 82 716 0.8000 1.0000 2.0000 0.0000 Constraint 82 707 0.8000 1.0000 2.0000 0.0000 Constraint 82 692 0.8000 1.0000 2.0000 0.0000 Constraint 82 681 0.8000 1.0000 2.0000 0.0000 Constraint 82 673 0.8000 1.0000 2.0000 0.0000 Constraint 82 598 0.8000 1.0000 2.0000 0.0000 Constraint 82 587 0.8000 1.0000 2.0000 0.0000 Constraint 82 572 0.8000 1.0000 2.0000 0.0000 Constraint 82 563 0.8000 1.0000 2.0000 0.0000 Constraint 82 556 0.8000 1.0000 2.0000 0.0000 Constraint 82 494 0.8000 1.0000 2.0000 0.0000 Constraint 82 478 0.8000 1.0000 2.0000 0.0000 Constraint 82 471 0.8000 1.0000 2.0000 0.0000 Constraint 82 459 0.8000 1.0000 2.0000 0.0000 Constraint 82 452 0.8000 1.0000 2.0000 0.0000 Constraint 82 447 0.8000 1.0000 2.0000 0.0000 Constraint 82 439 0.8000 1.0000 2.0000 0.0000 Constraint 82 431 0.8000 1.0000 2.0000 0.0000 Constraint 82 422 0.8000 1.0000 2.0000 0.0000 Constraint 82 402 0.8000 1.0000 2.0000 0.0000 Constraint 82 393 0.8000 1.0000 2.0000 0.0000 Constraint 82 310 0.8000 1.0000 2.0000 0.0000 Constraint 82 289 0.8000 1.0000 2.0000 0.0000 Constraint 82 280 0.8000 1.0000 2.0000 0.0000 Constraint 82 273 0.8000 1.0000 2.0000 0.0000 Constraint 82 262 0.8000 1.0000 2.0000 0.0000 Constraint 82 202 0.8000 1.0000 2.0000 0.0000 Constraint 82 138 0.8000 1.0000 2.0000 0.0000 Constraint 82 126 0.8000 1.0000 2.0000 0.0000 Constraint 82 113 0.8000 1.0000 2.0000 0.0000 Constraint 82 106 0.8000 1.0000 2.0000 0.0000 Constraint 82 98 0.8000 1.0000 2.0000 0.0000 Constraint 82 89 0.8000 1.0000 2.0000 0.0000 Constraint 74 729 0.8000 1.0000 2.0000 0.0000 Constraint 74 723 0.8000 1.0000 2.0000 0.0000 Constraint 74 716 0.8000 1.0000 2.0000 0.0000 Constraint 74 707 0.8000 1.0000 2.0000 0.0000 Constraint 74 692 0.8000 1.0000 2.0000 0.0000 Constraint 74 681 0.8000 1.0000 2.0000 0.0000 Constraint 74 673 0.8000 1.0000 2.0000 0.0000 Constraint 74 598 0.8000 1.0000 2.0000 0.0000 Constraint 74 556 0.8000 1.0000 2.0000 0.0000 Constraint 74 551 0.8000 1.0000 2.0000 0.0000 Constraint 74 542 0.8000 1.0000 2.0000 0.0000 Constraint 74 518 0.8000 1.0000 2.0000 0.0000 Constraint 74 507 0.8000 1.0000 2.0000 0.0000 Constraint 74 494 0.8000 1.0000 2.0000 0.0000 Constraint 74 486 0.8000 1.0000 2.0000 0.0000 Constraint 74 478 0.8000 1.0000 2.0000 0.0000 Constraint 74 471 0.8000 1.0000 2.0000 0.0000 Constraint 74 447 0.8000 1.0000 2.0000 0.0000 Constraint 74 439 0.8000 1.0000 2.0000 0.0000 Constraint 74 431 0.8000 1.0000 2.0000 0.0000 Constraint 74 422 0.8000 1.0000 2.0000 0.0000 Constraint 74 414 0.8000 1.0000 2.0000 0.0000 Constraint 74 402 0.8000 1.0000 2.0000 0.0000 Constraint 74 393 0.8000 1.0000 2.0000 0.0000 Constraint 74 343 0.8000 1.0000 2.0000 0.0000 Constraint 74 319 0.8000 1.0000 2.0000 0.0000 Constraint 74 303 0.8000 1.0000 2.0000 0.0000 Constraint 74 295 0.8000 1.0000 2.0000 0.0000 Constraint 74 289 0.8000 1.0000 2.0000 0.0000 Constraint 74 280 0.8000 1.0000 2.0000 0.0000 Constraint 74 273 0.8000 1.0000 2.0000 0.0000 Constraint 74 202 0.8000 1.0000 2.0000 0.0000 Constraint 74 126 0.8000 1.0000 2.0000 0.0000 Constraint 74 113 0.8000 1.0000 2.0000 0.0000 Constraint 74 106 0.8000 1.0000 2.0000 0.0000 Constraint 74 98 0.8000 1.0000 2.0000 0.0000 Constraint 74 89 0.8000 1.0000 2.0000 0.0000 Constraint 74 82 0.8000 1.0000 2.0000 0.0000 Constraint 65 729 0.8000 1.0000 2.0000 0.0000 Constraint 65 723 0.8000 1.0000 2.0000 0.0000 Constraint 65 716 0.8000 1.0000 2.0000 0.0000 Constraint 65 707 0.8000 1.0000 2.0000 0.0000 Constraint 65 692 0.8000 1.0000 2.0000 0.0000 Constraint 65 608 0.8000 1.0000 2.0000 0.0000 Constraint 65 598 0.8000 1.0000 2.0000 0.0000 Constraint 65 556 0.8000 1.0000 2.0000 0.0000 Constraint 65 551 0.8000 1.0000 2.0000 0.0000 Constraint 65 533 0.8000 1.0000 2.0000 0.0000 Constraint 65 518 0.8000 1.0000 2.0000 0.0000 Constraint 65 507 0.8000 1.0000 2.0000 0.0000 Constraint 65 494 0.8000 1.0000 2.0000 0.0000 Constraint 65 486 0.8000 1.0000 2.0000 0.0000 Constraint 65 478 0.8000 1.0000 2.0000 0.0000 Constraint 65 471 0.8000 1.0000 2.0000 0.0000 Constraint 65 447 0.8000 1.0000 2.0000 0.0000 Constraint 65 439 0.8000 1.0000 2.0000 0.0000 Constraint 65 431 0.8000 1.0000 2.0000 0.0000 Constraint 65 422 0.8000 1.0000 2.0000 0.0000 Constraint 65 402 0.8000 1.0000 2.0000 0.0000 Constraint 65 393 0.8000 1.0000 2.0000 0.0000 Constraint 65 343 0.8000 1.0000 2.0000 0.0000 Constraint 65 325 0.8000 1.0000 2.0000 0.0000 Constraint 65 319 0.8000 1.0000 2.0000 0.0000 Constraint 65 310 0.8000 1.0000 2.0000 0.0000 Constraint 65 303 0.8000 1.0000 2.0000 0.0000 Constraint 65 295 0.8000 1.0000 2.0000 0.0000 Constraint 65 289 0.8000 1.0000 2.0000 0.0000 Constraint 65 211 0.8000 1.0000 2.0000 0.0000 Constraint 65 202 0.8000 1.0000 2.0000 0.0000 Constraint 65 194 0.8000 1.0000 2.0000 0.0000 Constraint 65 153 0.8000 1.0000 2.0000 0.0000 Constraint 65 126 0.8000 1.0000 2.0000 0.0000 Constraint 65 113 0.8000 1.0000 2.0000 0.0000 Constraint 65 106 0.8000 1.0000 2.0000 0.0000 Constraint 65 98 0.8000 1.0000 2.0000 0.0000 Constraint 65 89 0.8000 1.0000 2.0000 0.0000 Constraint 65 82 0.8000 1.0000 2.0000 0.0000 Constraint 65 74 0.8000 1.0000 2.0000 0.0000 Constraint 58 729 0.8000 1.0000 2.0000 0.0000 Constraint 58 723 0.8000 1.0000 2.0000 0.0000 Constraint 58 716 0.8000 1.0000 2.0000 0.0000 Constraint 58 707 0.8000 1.0000 2.0000 0.0000 Constraint 58 692 0.8000 1.0000 2.0000 0.0000 Constraint 58 542 0.8000 1.0000 2.0000 0.0000 Constraint 58 518 0.8000 1.0000 2.0000 0.0000 Constraint 58 507 0.8000 1.0000 2.0000 0.0000 Constraint 58 494 0.8000 1.0000 2.0000 0.0000 Constraint 58 486 0.8000 1.0000 2.0000 0.0000 Constraint 58 478 0.8000 1.0000 2.0000 0.0000 Constraint 58 471 0.8000 1.0000 2.0000 0.0000 Constraint 58 459 0.8000 1.0000 2.0000 0.0000 Constraint 58 422 0.8000 1.0000 2.0000 0.0000 Constraint 58 402 0.8000 1.0000 2.0000 0.0000 Constraint 58 393 0.8000 1.0000 2.0000 0.0000 Constraint 58 343 0.8000 1.0000 2.0000 0.0000 Constraint 58 325 0.8000 1.0000 2.0000 0.0000 Constraint 58 319 0.8000 1.0000 2.0000 0.0000 Constraint 58 310 0.8000 1.0000 2.0000 0.0000 Constraint 58 303 0.8000 1.0000 2.0000 0.0000 Constraint 58 295 0.8000 1.0000 2.0000 0.0000 Constraint 58 289 0.8000 1.0000 2.0000 0.0000 Constraint 58 228 0.8000 1.0000 2.0000 0.0000 Constraint 58 220 0.8000 1.0000 2.0000 0.0000 Constraint 58 202 0.8000 1.0000 2.0000 0.0000 Constraint 58 113 0.8000 1.0000 2.0000 0.0000 Constraint 58 106 0.8000 1.0000 2.0000 0.0000 Constraint 58 98 0.8000 1.0000 2.0000 0.0000 Constraint 58 89 0.8000 1.0000 2.0000 0.0000 Constraint 58 82 0.8000 1.0000 2.0000 0.0000 Constraint 58 74 0.8000 1.0000 2.0000 0.0000 Constraint 58 65 0.8000 1.0000 2.0000 0.0000 Constraint 50 729 0.8000 1.0000 2.0000 0.0000 Constraint 50 723 0.8000 1.0000 2.0000 0.0000 Constraint 50 716 0.8000 1.0000 2.0000 0.0000 Constraint 50 707 0.8000 1.0000 2.0000 0.0000 Constraint 50 619 0.8000 1.0000 2.0000 0.0000 Constraint 50 608 0.8000 1.0000 2.0000 0.0000 Constraint 50 598 0.8000 1.0000 2.0000 0.0000 Constraint 50 587 0.8000 1.0000 2.0000 0.0000 Constraint 50 579 0.8000 1.0000 2.0000 0.0000 Constraint 50 572 0.8000 1.0000 2.0000 0.0000 Constraint 50 563 0.8000 1.0000 2.0000 0.0000 Constraint 50 556 0.8000 1.0000 2.0000 0.0000 Constraint 50 551 0.8000 1.0000 2.0000 0.0000 Constraint 50 542 0.8000 1.0000 2.0000 0.0000 Constraint 50 533 0.8000 1.0000 2.0000 0.0000 Constraint 50 525 0.8000 1.0000 2.0000 0.0000 Constraint 50 518 0.8000 1.0000 2.0000 0.0000 Constraint 50 507 0.8000 1.0000 2.0000 0.0000 Constraint 50 494 0.8000 1.0000 2.0000 0.0000 Constraint 50 486 0.8000 1.0000 2.0000 0.0000 Constraint 50 478 0.8000 1.0000 2.0000 0.0000 Constraint 50 471 0.8000 1.0000 2.0000 0.0000 Constraint 50 459 0.8000 1.0000 2.0000 0.0000 Constraint 50 422 0.8000 1.0000 2.0000 0.0000 Constraint 50 402 0.8000 1.0000 2.0000 0.0000 Constraint 50 393 0.8000 1.0000 2.0000 0.0000 Constraint 50 352 0.8000 1.0000 2.0000 0.0000 Constraint 50 343 0.8000 1.0000 2.0000 0.0000 Constraint 50 331 0.8000 1.0000 2.0000 0.0000 Constraint 50 325 0.8000 1.0000 2.0000 0.0000 Constraint 50 319 0.8000 1.0000 2.0000 0.0000 Constraint 50 310 0.8000 1.0000 2.0000 0.0000 Constraint 50 303 0.8000 1.0000 2.0000 0.0000 Constraint 50 262 0.8000 1.0000 2.0000 0.0000 Constraint 50 254 0.8000 1.0000 2.0000 0.0000 Constraint 50 244 0.8000 1.0000 2.0000 0.0000 Constraint 50 228 0.8000 1.0000 2.0000 0.0000 Constraint 50 220 0.8000 1.0000 2.0000 0.0000 Constraint 50 211 0.8000 1.0000 2.0000 0.0000 Constraint 50 202 0.8000 1.0000 2.0000 0.0000 Constraint 50 194 0.8000 1.0000 2.0000 0.0000 Constraint 50 161 0.8000 1.0000 2.0000 0.0000 Constraint 50 113 0.8000 1.0000 2.0000 0.0000 Constraint 50 106 0.8000 1.0000 2.0000 0.0000 Constraint 50 98 0.8000 1.0000 2.0000 0.0000 Constraint 50 89 0.8000 1.0000 2.0000 0.0000 Constraint 50 82 0.8000 1.0000 2.0000 0.0000 Constraint 50 74 0.8000 1.0000 2.0000 0.0000 Constraint 50 65 0.8000 1.0000 2.0000 0.0000 Constraint 50 58 0.8000 1.0000 2.0000 0.0000 Constraint 39 716 0.8000 1.0000 2.0000 0.0000 Constraint 39 707 0.8000 1.0000 2.0000 0.0000 Constraint 39 628 0.8000 1.0000 2.0000 0.0000 Constraint 39 619 0.8000 1.0000 2.0000 0.0000 Constraint 39 608 0.8000 1.0000 2.0000 0.0000 Constraint 39 598 0.8000 1.0000 2.0000 0.0000 Constraint 39 587 0.8000 1.0000 2.0000 0.0000 Constraint 39 579 0.8000 1.0000 2.0000 0.0000 Constraint 39 572 0.8000 1.0000 2.0000 0.0000 Constraint 39 556 0.8000 1.0000 2.0000 0.0000 Constraint 39 551 0.8000 1.0000 2.0000 0.0000 Constraint 39 542 0.8000 1.0000 2.0000 0.0000 Constraint 39 507 0.8000 1.0000 2.0000 0.0000 Constraint 39 494 0.8000 1.0000 2.0000 0.0000 Constraint 39 486 0.8000 1.0000 2.0000 0.0000 Constraint 39 478 0.8000 1.0000 2.0000 0.0000 Constraint 39 471 0.8000 1.0000 2.0000 0.0000 Constraint 39 459 0.8000 1.0000 2.0000 0.0000 Constraint 39 452 0.8000 1.0000 2.0000 0.0000 Constraint 39 431 0.8000 1.0000 2.0000 0.0000 Constraint 39 422 0.8000 1.0000 2.0000 0.0000 Constraint 39 402 0.8000 1.0000 2.0000 0.0000 Constraint 39 352 0.8000 1.0000 2.0000 0.0000 Constraint 39 343 0.8000 1.0000 2.0000 0.0000 Constraint 39 331 0.8000 1.0000 2.0000 0.0000 Constraint 39 319 0.8000 1.0000 2.0000 0.0000 Constraint 39 310 0.8000 1.0000 2.0000 0.0000 Constraint 39 262 0.8000 1.0000 2.0000 0.0000 Constraint 39 254 0.8000 1.0000 2.0000 0.0000 Constraint 39 244 0.8000 1.0000 2.0000 0.0000 Constraint 39 237 0.8000 1.0000 2.0000 0.0000 Constraint 39 228 0.8000 1.0000 2.0000 0.0000 Constraint 39 220 0.8000 1.0000 2.0000 0.0000 Constraint 39 211 0.8000 1.0000 2.0000 0.0000 Constraint 39 170 0.8000 1.0000 2.0000 0.0000 Constraint 39 106 0.8000 1.0000 2.0000 0.0000 Constraint 39 98 0.8000 1.0000 2.0000 0.0000 Constraint 39 89 0.8000 1.0000 2.0000 0.0000 Constraint 39 82 0.8000 1.0000 2.0000 0.0000 Constraint 39 74 0.8000 1.0000 2.0000 0.0000 Constraint 39 65 0.8000 1.0000 2.0000 0.0000 Constraint 39 58 0.8000 1.0000 2.0000 0.0000 Constraint 39 50 0.8000 1.0000 2.0000 0.0000 Constraint 32 723 0.8000 1.0000 2.0000 0.0000 Constraint 32 635 0.8000 1.0000 2.0000 0.0000 Constraint 32 628 0.8000 1.0000 2.0000 0.0000 Constraint 32 619 0.8000 1.0000 2.0000 0.0000 Constraint 32 608 0.8000 1.0000 2.0000 0.0000 Constraint 32 598 0.8000 1.0000 2.0000 0.0000 Constraint 32 587 0.8000 1.0000 2.0000 0.0000 Constraint 32 579 0.8000 1.0000 2.0000 0.0000 Constraint 32 572 0.8000 1.0000 2.0000 0.0000 Constraint 32 556 0.8000 1.0000 2.0000 0.0000 Constraint 32 551 0.8000 1.0000 2.0000 0.0000 Constraint 32 542 0.8000 1.0000 2.0000 0.0000 Constraint 32 525 0.8000 1.0000 2.0000 0.0000 Constraint 32 518 0.8000 1.0000 2.0000 0.0000 Constraint 32 507 0.8000 1.0000 2.0000 0.0000 Constraint 32 494 0.8000 1.0000 2.0000 0.0000 Constraint 32 486 0.8000 1.0000 2.0000 0.0000 Constraint 32 478 0.8000 1.0000 2.0000 0.0000 Constraint 32 471 0.8000 1.0000 2.0000 0.0000 Constraint 32 459 0.8000 1.0000 2.0000 0.0000 Constraint 32 452 0.8000 1.0000 2.0000 0.0000 Constraint 32 431 0.8000 1.0000 2.0000 0.0000 Constraint 32 402 0.8000 1.0000 2.0000 0.0000 Constraint 32 362 0.8000 1.0000 2.0000 0.0000 Constraint 32 310 0.8000 1.0000 2.0000 0.0000 Constraint 32 289 0.8000 1.0000 2.0000 0.0000 Constraint 32 280 0.8000 1.0000 2.0000 0.0000 Constraint 32 273 0.8000 1.0000 2.0000 0.0000 Constraint 32 262 0.8000 1.0000 2.0000 0.0000 Constraint 32 254 0.8000 1.0000 2.0000 0.0000 Constraint 32 244 0.8000 1.0000 2.0000 0.0000 Constraint 32 237 0.8000 1.0000 2.0000 0.0000 Constraint 32 228 0.8000 1.0000 2.0000 0.0000 Constraint 32 220 0.8000 1.0000 2.0000 0.0000 Constraint 32 211 0.8000 1.0000 2.0000 0.0000 Constraint 32 202 0.8000 1.0000 2.0000 0.0000 Constraint 32 170 0.8000 1.0000 2.0000 0.0000 Constraint 32 113 0.8000 1.0000 2.0000 0.0000 Constraint 32 98 0.8000 1.0000 2.0000 0.0000 Constraint 32 89 0.8000 1.0000 2.0000 0.0000 Constraint 32 82 0.8000 1.0000 2.0000 0.0000 Constraint 32 74 0.8000 1.0000 2.0000 0.0000 Constraint 32 65 0.8000 1.0000 2.0000 0.0000 Constraint 32 58 0.8000 1.0000 2.0000 0.0000 Constraint 32 50 0.8000 1.0000 2.0000 0.0000 Constraint 32 39 0.8000 1.0000 2.0000 0.0000 Constraint 23 650 0.8000 1.0000 2.0000 0.0000 Constraint 23 642 0.8000 1.0000 2.0000 0.0000 Constraint 23 628 0.8000 1.0000 2.0000 0.0000 Constraint 23 619 0.8000 1.0000 2.0000 0.0000 Constraint 23 608 0.8000 1.0000 2.0000 0.0000 Constraint 23 598 0.8000 1.0000 2.0000 0.0000 Constraint 23 587 0.8000 1.0000 2.0000 0.0000 Constraint 23 572 0.8000 1.0000 2.0000 0.0000 Constraint 23 556 0.8000 1.0000 2.0000 0.0000 Constraint 23 551 0.8000 1.0000 2.0000 0.0000 Constraint 23 542 0.8000 1.0000 2.0000 0.0000 Constraint 23 533 0.8000 1.0000 2.0000 0.0000 Constraint 23 525 0.8000 1.0000 2.0000 0.0000 Constraint 23 518 0.8000 1.0000 2.0000 0.0000 Constraint 23 507 0.8000 1.0000 2.0000 0.0000 Constraint 23 494 0.8000 1.0000 2.0000 0.0000 Constraint 23 486 0.8000 1.0000 2.0000 0.0000 Constraint 23 478 0.8000 1.0000 2.0000 0.0000 Constraint 23 471 0.8000 1.0000 2.0000 0.0000 Constraint 23 459 0.8000 1.0000 2.0000 0.0000 Constraint 23 452 0.8000 1.0000 2.0000 0.0000 Constraint 23 431 0.8000 1.0000 2.0000 0.0000 Constraint 23 422 0.8000 1.0000 2.0000 0.0000 Constraint 23 402 0.8000 1.0000 2.0000 0.0000 Constraint 23 385 0.8000 1.0000 2.0000 0.0000 Constraint 23 362 0.8000 1.0000 2.0000 0.0000 Constraint 23 352 0.8000 1.0000 2.0000 0.0000 Constraint 23 343 0.8000 1.0000 2.0000 0.0000 Constraint 23 319 0.8000 1.0000 2.0000 0.0000 Constraint 23 310 0.8000 1.0000 2.0000 0.0000 Constraint 23 303 0.8000 1.0000 2.0000 0.0000 Constraint 23 295 0.8000 1.0000 2.0000 0.0000 Constraint 23 289 0.8000 1.0000 2.0000 0.0000 Constraint 23 280 0.8000 1.0000 2.0000 0.0000 Constraint 23 273 0.8000 1.0000 2.0000 0.0000 Constraint 23 262 0.8000 1.0000 2.0000 0.0000 Constraint 23 254 0.8000 1.0000 2.0000 0.0000 Constraint 23 244 0.8000 1.0000 2.0000 0.0000 Constraint 23 237 0.8000 1.0000 2.0000 0.0000 Constraint 23 228 0.8000 1.0000 2.0000 0.0000 Constraint 23 182 0.8000 1.0000 2.0000 0.0000 Constraint 23 161 0.8000 1.0000 2.0000 0.0000 Constraint 23 153 0.8000 1.0000 2.0000 0.0000 Constraint 23 126 0.8000 1.0000 2.0000 0.0000 Constraint 23 113 0.8000 1.0000 2.0000 0.0000 Constraint 23 106 0.8000 1.0000 2.0000 0.0000 Constraint 23 89 0.8000 1.0000 2.0000 0.0000 Constraint 23 82 0.8000 1.0000 2.0000 0.0000 Constraint 23 74 0.8000 1.0000 2.0000 0.0000 Constraint 23 65 0.8000 1.0000 2.0000 0.0000 Constraint 23 58 0.8000 1.0000 2.0000 0.0000 Constraint 23 50 0.8000 1.0000 2.0000 0.0000 Constraint 23 39 0.8000 1.0000 2.0000 0.0000 Constraint 23 32 0.8000 1.0000 2.0000 0.0000 Constraint 17 650 0.8000 1.0000 2.0000 0.0000 Constraint 17 642 0.8000 1.0000 2.0000 0.0000 Constraint 17 635 0.8000 1.0000 2.0000 0.0000 Constraint 17 628 0.8000 1.0000 2.0000 0.0000 Constraint 17 619 0.8000 1.0000 2.0000 0.0000 Constraint 17 608 0.8000 1.0000 2.0000 0.0000 Constraint 17 598 0.8000 1.0000 2.0000 0.0000 Constraint 17 587 0.8000 1.0000 2.0000 0.0000 Constraint 17 579 0.8000 1.0000 2.0000 0.0000 Constraint 17 572 0.8000 1.0000 2.0000 0.0000 Constraint 17 563 0.8000 1.0000 2.0000 0.0000 Constraint 17 556 0.8000 1.0000 2.0000 0.0000 Constraint 17 551 0.8000 1.0000 2.0000 0.0000 Constraint 17 542 0.8000 1.0000 2.0000 0.0000 Constraint 17 533 0.8000 1.0000 2.0000 0.0000 Constraint 17 525 0.8000 1.0000 2.0000 0.0000 Constraint 17 518 0.8000 1.0000 2.0000 0.0000 Constraint 17 507 0.8000 1.0000 2.0000 0.0000 Constraint 17 494 0.8000 1.0000 2.0000 0.0000 Constraint 17 486 0.8000 1.0000 2.0000 0.0000 Constraint 17 478 0.8000 1.0000 2.0000 0.0000 Constraint 17 471 0.8000 1.0000 2.0000 0.0000 Constraint 17 459 0.8000 1.0000 2.0000 0.0000 Constraint 17 452 0.8000 1.0000 2.0000 0.0000 Constraint 17 447 0.8000 1.0000 2.0000 0.0000 Constraint 17 431 0.8000 1.0000 2.0000 0.0000 Constraint 17 414 0.8000 1.0000 2.0000 0.0000 Constraint 17 402 0.8000 1.0000 2.0000 0.0000 Constraint 17 393 0.8000 1.0000 2.0000 0.0000 Constraint 17 385 0.8000 1.0000 2.0000 0.0000 Constraint 17 362 0.8000 1.0000 2.0000 0.0000 Constraint 17 352 0.8000 1.0000 2.0000 0.0000 Constraint 17 343 0.8000 1.0000 2.0000 0.0000 Constraint 17 336 0.8000 1.0000 2.0000 0.0000 Constraint 17 331 0.8000 1.0000 2.0000 0.0000 Constraint 17 319 0.8000 1.0000 2.0000 0.0000 Constraint 17 310 0.8000 1.0000 2.0000 0.0000 Constraint 17 295 0.8000 1.0000 2.0000 0.0000 Constraint 17 289 0.8000 1.0000 2.0000 0.0000 Constraint 17 280 0.8000 1.0000 2.0000 0.0000 Constraint 17 273 0.8000 1.0000 2.0000 0.0000 Constraint 17 262 0.8000 1.0000 2.0000 0.0000 Constraint 17 254 0.8000 1.0000 2.0000 0.0000 Constraint 17 244 0.8000 1.0000 2.0000 0.0000 Constraint 17 228 0.8000 1.0000 2.0000 0.0000 Constraint 17 220 0.8000 1.0000 2.0000 0.0000 Constraint 17 202 0.8000 1.0000 2.0000 0.0000 Constraint 17 194 0.8000 1.0000 2.0000 0.0000 Constraint 17 170 0.8000 1.0000 2.0000 0.0000 Constraint 17 161 0.8000 1.0000 2.0000 0.0000 Constraint 17 153 0.8000 1.0000 2.0000 0.0000 Constraint 17 146 0.8000 1.0000 2.0000 0.0000 Constraint 17 138 0.8000 1.0000 2.0000 0.0000 Constraint 17 126 0.8000 1.0000 2.0000 0.0000 Constraint 17 113 0.8000 1.0000 2.0000 0.0000 Constraint 17 106 0.8000 1.0000 2.0000 0.0000 Constraint 17 98 0.8000 1.0000 2.0000 0.0000 Constraint 17 89 0.8000 1.0000 2.0000 0.0000 Constraint 17 82 0.8000 1.0000 2.0000 0.0000 Constraint 17 74 0.8000 1.0000 2.0000 0.0000 Constraint 17 65 0.8000 1.0000 2.0000 0.0000 Constraint 17 58 0.8000 1.0000 2.0000 0.0000 Constraint 17 50 0.8000 1.0000 2.0000 0.0000 Constraint 17 39 0.8000 1.0000 2.0000 0.0000 Constraint 17 32 0.8000 1.0000 2.0000 0.0000 Constraint 17 23 0.8000 1.0000 2.0000 0.0000 Constraint 9 650 0.8000 1.0000 2.0000 0.0000 Constraint 9 642 0.8000 1.0000 2.0000 0.0000 Constraint 9 635 0.8000 1.0000 2.0000 0.0000 Constraint 9 628 0.8000 1.0000 2.0000 0.0000 Constraint 9 619 0.8000 1.0000 2.0000 0.0000 Constraint 9 608 0.8000 1.0000 2.0000 0.0000 Constraint 9 598 0.8000 1.0000 2.0000 0.0000 Constraint 9 587 0.8000 1.0000 2.0000 0.0000 Constraint 9 579 0.8000 1.0000 2.0000 0.0000 Constraint 9 572 0.8000 1.0000 2.0000 0.0000 Constraint 9 556 0.8000 1.0000 2.0000 0.0000 Constraint 9 551 0.8000 1.0000 2.0000 0.0000 Constraint 9 542 0.8000 1.0000 2.0000 0.0000 Constraint 9 525 0.8000 1.0000 2.0000 0.0000 Constraint 9 518 0.8000 1.0000 2.0000 0.0000 Constraint 9 507 0.8000 1.0000 2.0000 0.0000 Constraint 9 494 0.8000 1.0000 2.0000 0.0000 Constraint 9 486 0.8000 1.0000 2.0000 0.0000 Constraint 9 478 0.8000 1.0000 2.0000 0.0000 Constraint 9 471 0.8000 1.0000 2.0000 0.0000 Constraint 9 459 0.8000 1.0000 2.0000 0.0000 Constraint 9 452 0.8000 1.0000 2.0000 0.0000 Constraint 9 447 0.8000 1.0000 2.0000 0.0000 Constraint 9 431 0.8000 1.0000 2.0000 0.0000 Constraint 9 414 0.8000 1.0000 2.0000 0.0000 Constraint 9 402 0.8000 1.0000 2.0000 0.0000 Constraint 9 385 0.8000 1.0000 2.0000 0.0000 Constraint 9 362 0.8000 1.0000 2.0000 0.0000 Constraint 9 352 0.8000 1.0000 2.0000 0.0000 Constraint 9 343 0.8000 1.0000 2.0000 0.0000 Constraint 9 336 0.8000 1.0000 2.0000 0.0000 Constraint 9 331 0.8000 1.0000 2.0000 0.0000 Constraint 9 325 0.8000 1.0000 2.0000 0.0000 Constraint 9 319 0.8000 1.0000 2.0000 0.0000 Constraint 9 310 0.8000 1.0000 2.0000 0.0000 Constraint 9 303 0.8000 1.0000 2.0000 0.0000 Constraint 9 295 0.8000 1.0000 2.0000 0.0000 Constraint 9 289 0.8000 1.0000 2.0000 0.0000 Constraint 9 280 0.8000 1.0000 2.0000 0.0000 Constraint 9 273 0.8000 1.0000 2.0000 0.0000 Constraint 9 262 0.8000 1.0000 2.0000 0.0000 Constraint 9 254 0.8000 1.0000 2.0000 0.0000 Constraint 9 244 0.8000 1.0000 2.0000 0.0000 Constraint 9 194 0.8000 1.0000 2.0000 0.0000 Constraint 9 182 0.8000 1.0000 2.0000 0.0000 Constraint 9 170 0.8000 1.0000 2.0000 0.0000 Constraint 9 161 0.8000 1.0000 2.0000 0.0000 Constraint 9 153 0.8000 1.0000 2.0000 0.0000 Constraint 9 146 0.8000 1.0000 2.0000 0.0000 Constraint 9 138 0.8000 1.0000 2.0000 0.0000 Constraint 9 126 0.8000 1.0000 2.0000 0.0000 Constraint 9 113 0.8000 1.0000 2.0000 0.0000 Constraint 9 106 0.8000 1.0000 2.0000 0.0000 Constraint 9 89 0.8000 1.0000 2.0000 0.0000 Constraint 9 74 0.8000 1.0000 2.0000 0.0000 Constraint 9 65 0.8000 1.0000 2.0000 0.0000 Constraint 9 58 0.8000 1.0000 2.0000 0.0000 Constraint 9 50 0.8000 1.0000 2.0000 0.0000 Constraint 9 39 0.8000 1.0000 2.0000 0.0000 Constraint 9 32 0.8000 1.0000 2.0000 0.0000 Constraint 9 23 0.8000 1.0000 2.0000 0.0000 Constraint 9 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 665 0.8000 1.0000 2.0000 0.0000 Constraint 3 650 0.8000 1.0000 2.0000 0.0000 Constraint 3 642 0.8000 1.0000 2.0000 0.0000 Constraint 3 635 0.8000 1.0000 2.0000 0.0000 Constraint 3 628 0.8000 1.0000 2.0000 0.0000 Constraint 3 619 0.8000 1.0000 2.0000 0.0000 Constraint 3 608 0.8000 1.0000 2.0000 0.0000 Constraint 3 598 0.8000 1.0000 2.0000 0.0000 Constraint 3 587 0.8000 1.0000 2.0000 0.0000 Constraint 3 579 0.8000 1.0000 2.0000 0.0000 Constraint 3 572 0.8000 1.0000 2.0000 0.0000 Constraint 3 563 0.8000 1.0000 2.0000 0.0000 Constraint 3 556 0.8000 1.0000 2.0000 0.0000 Constraint 3 551 0.8000 1.0000 2.0000 0.0000 Constraint 3 542 0.8000 1.0000 2.0000 0.0000 Constraint 3 533 0.8000 1.0000 2.0000 0.0000 Constraint 3 525 0.8000 1.0000 2.0000 0.0000 Constraint 3 518 0.8000 1.0000 2.0000 0.0000 Constraint 3 507 0.8000 1.0000 2.0000 0.0000 Constraint 3 494 0.8000 1.0000 2.0000 0.0000 Constraint 3 486 0.8000 1.0000 2.0000 0.0000 Constraint 3 478 0.8000 1.0000 2.0000 0.0000 Constraint 3 471 0.8000 1.0000 2.0000 0.0000 Constraint 3 459 0.8000 1.0000 2.0000 0.0000 Constraint 3 452 0.8000 1.0000 2.0000 0.0000 Constraint 3 447 0.8000 1.0000 2.0000 0.0000 Constraint 3 439 0.8000 1.0000 2.0000 0.0000 Constraint 3 431 0.8000 1.0000 2.0000 0.0000 Constraint 3 422 0.8000 1.0000 2.0000 0.0000 Constraint 3 414 0.8000 1.0000 2.0000 0.0000 Constraint 3 402 0.8000 1.0000 2.0000 0.0000 Constraint 3 385 0.8000 1.0000 2.0000 0.0000 Constraint 3 374 0.8000 1.0000 2.0000 0.0000 Constraint 3 362 0.8000 1.0000 2.0000 0.0000 Constraint 3 352 0.8000 1.0000 2.0000 0.0000 Constraint 3 343 0.8000 1.0000 2.0000 0.0000 Constraint 3 336 0.8000 1.0000 2.0000 0.0000 Constraint 3 331 0.8000 1.0000 2.0000 0.0000 Constraint 3 325 0.8000 1.0000 2.0000 0.0000 Constraint 3 319 0.8000 1.0000 2.0000 0.0000 Constraint 3 310 0.8000 1.0000 2.0000 0.0000 Constraint 3 303 0.8000 1.0000 2.0000 0.0000 Constraint 3 295 0.8000 1.0000 2.0000 0.0000 Constraint 3 289 0.8000 1.0000 2.0000 0.0000 Constraint 3 280 0.8000 1.0000 2.0000 0.0000 Constraint 3 273 0.8000 1.0000 2.0000 0.0000 Constraint 3 262 0.8000 1.0000 2.0000 0.0000 Constraint 3 254 0.8000 1.0000 2.0000 0.0000 Constraint 3 244 0.8000 1.0000 2.0000 0.0000 Constraint 3 237 0.8000 1.0000 2.0000 0.0000 Constraint 3 202 0.8000 1.0000 2.0000 0.0000 Constraint 3 182 0.8000 1.0000 2.0000 0.0000 Constraint 3 170 0.8000 1.0000 2.0000 0.0000 Constraint 3 161 0.8000 1.0000 2.0000 0.0000 Constraint 3 153 0.8000 1.0000 2.0000 0.0000 Constraint 3 146 0.8000 1.0000 2.0000 0.0000 Constraint 3 126 0.8000 1.0000 2.0000 0.0000 Constraint 3 113 0.8000 1.0000 2.0000 0.0000 Constraint 3 106 0.8000 1.0000 2.0000 0.0000 Constraint 3 65 0.8000 1.0000 2.0000 0.0000 Constraint 3 58 0.8000 1.0000 2.0000 0.0000 Constraint 3 50 0.8000 1.0000 2.0000 0.0000 Constraint 3 39 0.8000 1.0000 2.0000 0.0000 Constraint 3 32 0.8000 1.0000 2.0000 0.0000 Constraint 3 23 0.8000 1.0000 2.0000 0.0000 Constraint 3 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 9 0.8000 1.0000 2.0000 0.0000 Done printing distance constraints # command: