# List of top-scoring protein chains for T0359.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 1.28e-14 1rgrA 99 1.36e-14 b.36.1.1 104931 1kefA 93 1.67e-14 b.36.1.1 72369 1iu0A 91 2.82e-14 b.36.1.1 83707 1zokA 93 3.04e-14 1um7A 113 3.93e-14 b.36.1.1 99579 2bygA 117 6.80e-14 1d5gA 96 1.08e-13 b.36.1.1 70080 2fe5A 94 1.43e-13 1tp5A 119 1.47e-13 1be9A 119 1.72e-13 1pdr b.36.1.1 24774 1vj6A 102 1.72e-13 1gm1A 94 1.72e-13 b.36.1.1 70271 1pdr 99 2.93e-13 1pdr b.36.1.1 24771 1qlcA 95 3.83e-13 1qauA b.36.1.1 24776 1whaA 105 5.39e-13 2fcfA 103 6.00e-13 1gq5A 91 6.82e-13 b.36.1.1 76274 1gq4A 90 7.01e-13 b.36.1.1 70340 1i92A 91 7.23e-13 1pdr b.36.1.1 61990 1g9oA 91 7.39e-13 1pdr b.36.1.1 60400 1wfvA 103 7.47e-13 1x5qA 110 8.29e-13 2dazA 124 1.07e-12 1uhpA 107 1.11e-12 b.36.1.1 99400 1wf8A 107 1.21e-12 1q7xA 108 1.66e-12 b.36.1.1 96059 1um1A 110 2.74e-12 b.36.1.1 99578 1oziA 99 2.77e-12 b.36.1.1 93845 1uezA 101 5.77e-12 b.36.1.1 99286 1uewA 114 6.64e-12 b.36.1.1 99281 2d92A 108 7.89e-12 1z87A 263 9.02e-12 1qavA 90 1.03e-11 1qauA b.36.1.1 24777 1ihjA 98 1.11e-11 1pdr b.36.1.1 62382 1z86A 87 1.27e-11 2pdzA 86 1.38e-11 1pdr b.36.1.1 24778 1ujuA 111 1.47e-11 b.36.1.1 99469 1uf1A 128 1.51e-11 b.36.1.1 99288 1t2mA 101 2.07e-11 1xz9A 101 2.18e-11 2csjA 117 2.31e-11 1ueqA 123 2.74e-11 b.36.1.1 99271 1n7eA 97 3.88e-11 b.36.1.1 91691 1wg6A 127 4.93e-11 1x5rA 112 8.14e-11 2db5A 128 8.71e-11 2f0aA 98 9.86e-11 1l6oA 95 1.00e-10 b.36.1.1 84534 1uepA 103 1.23e-10 b.36.1.1 99270 1uitA 117 1.48e-10 b.36.1.1 99433 1wi2A 104 1.49e-10 1qavB 115 1.61e-10 1qauA b.36.1.1 24780 1b8qA 127 1.67e-10 1qauA b.36.1.1 24781 1x6dA 119 1.81e-10 1q3oA 109 1.82e-10 b.36.1.1 95700 1mc7A 95 1.91e-10 b.36.1.1 91241 1v5lA 103 2.38e-10 b.36.1.1 108378 1x8sA 102 2.58e-10 1qauA 112 2.64e-10 1qauA b.36.1.1 24779 2h2cA 107 2.77e-10 2h2bA 107 2.77e-10 1ry4A 128 3.00e-10 b.36.1.1 98085 2h3lA 103 3.21e-10 1mfgA 95 3.37e-10 b.36.1.1 79043 1vb7A 94 3.44e-10 b.36.1.1 108474 2h3mA 97 3.60e-10 1rzxA 98 3.76e-10 b.36.1.1 98236 1v5qA 122 3.99e-10 b.36.1.1 108383 1p1eA 101 4.35e-10 b.36.1.1 93898 1x5nA 114 5.11e-10 1i16 130 5.64e-10 1i16 b.36.1.2 24787 1v62A 117 5.65e-10 b.36.1.1 108390 1wh1A 124 6.26e-10 1p1dA 196 6.99e-10 b.36.1.1,b.36.1.1 93896,93897 1ujdA 117 8.57e-10 b.36.1.1 99454 1nf3C 128 8.61e-10 b.36.1.1 85596 1wf7A 103 9.85e-10 1rgwA 85 9.88e-10 b.36.1.1 97455 1wjlA 90 1.13e-09 1kwaA 88 1.19e-09 1kwaA b.36.1.1 24772 1wi4A 109 1.35e-09 1w9eA 166 1.46e-09 1va8A 113 1.48e-09 2cssA 121 1.49e-09 2cs5A 119 1.63e-09 2f5yA 91 2.14e-09 1m5zA 91 2.36e-09 b.36.1.1 78676 1zubA 114 3.69e-09 1whdA 100 3.70e-09 1u3bA 185 3.76e-09 1wfgA 131 4.16e-09 1ujvA 96 1.06e-08 b.36.1.1 99470 1x45A 98 1.11e-08 1u37A 89 1.14e-08 1y7nA 90 4.54e-08 1u39A 80 7.18e-08 1v6bA 118 1.12e-07 b.36.1.1 108394 1ufxA 103 1.66e-07 b.36.1.1 99359 1wifA 126 3.13e-07 1vaeA 111 3.74e-07 b.36.1.1 108466 1r6jA 82 4.85e-07 b.36.1.1 97151 1obxA 79 1.04e-06 b.36.1.1 86783 2d8iA 114 3.43e-05 1fc6A 388 2.22e-04 1fc6A b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 3.12e-04 1fc6A b.36.1.3,c.14.1.2 64742,64743 1lcyA 325 7.46e-04 b.36.1.4,b.47.1.1 73834,73835 1ky9A 448 4.54e-03 b.36.1.4,b.47.1.1 73198,73199 1sotA 320 5.80e-03 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 5.80e-03 b.36.1.4,b.47.1.1 105859,105860 1te0A 318 5.80e-03 1y8tA 324 7.81e-01 2bh4X 134 1.24e+00 2bgvX 134 1.28e+00 1mzvA 235 1.52e+00 c.61.1.1 91502 1qb7A 236 2.62e+00 1qb7A c.61.1.1 34087 1x6vA 630 3.28e+00 1cot 129 3.69e+00 1ycc a.3.1.1 15899 1wmaA 276 5.02e+00 1zn8A 180 5.19e+00 1m54A 363 5.50e+00 c.79.1.1 74463 1jbqA 435 6.20e+00 1oasA c.79.1.1 62850 1n5dA 288 8.53e+00 c.2.1.2 80030 1yg9A 330 8.71e+00 1u2wA 122 8.77e+00 1ao0A 459 1.01e+01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1gph1 465 1.01e+01 1ecfB 1jalA 363 1.10e+01 c.37.1.8,d.15.10.2 84138,84139 1mkmA 249 1.11e+01 a.4.5.33,d.110.2.2 79242,79243 1hvyA 288 1.18e+01 1bkpA d.117.1.1 41049 1hzwA 290 1.18e+01 1bkpA d.117.1.1 61464 1ypvA 313 1.21e+01 2a6tA 271 1.25e+01 1ju6A 313 1.26e+01 d.117.1.1 63289 1hw4A 355 1.31e+01 1bkpA d.117.1.1 41054 1bvwA 360 1.40e+01 1bvwA c.6.1.1 30668 1ocjA 362 1.41e+01 c.6.1.1 86801 1gz1A 362 1.41e+01 c.6.1.1 76405 2bvwA 362 1.41e+01 1bvwA c.6.1.1 30666 1oc7A 364 1.41e+01 c.6.1.1 86794 1lnzA 342 1.47e+01 b.117.1.1,c.37.1.8 78112,78113 1db3A 372 1.53e+01 1db3A c.2.1.2 29813 155c 135 1.71e+01 1ycc a.3.1.1 15900 2ewpA 226 1.98e+01 1s9pA 227 1.98e+01 a.123.1.1 105384 1kv6A 230 2.00e+01 a.123.1.1 77546 1tfcA 251 2.09e+01 a.123.1.1 106850 1s9qA 251 2.09e+01 a.123.1.1 105388 2tsrA 307 2.18e+01 1bkpA d.117.1.1 41043 1usyE 208 2.25e+01 1o63A 219 2.30e+01 c.94.1.1 92540 1f28A 297 2.41e+01 1bkpA d.117.1.1 59608 1kk1A 410 2.55e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1nvjA 140 2.71e+01 d.41.5.1 86243 1fm0E 150 2.72e+01 1fmaE d.41.5.1 38629 1sw2A 275 2.75e+01 c.94.1.1 106064 1sw5A 275 2.76e+01 c.94.1.1 106069 1yj5C 143 2.92e+01 1e6vC 258 3.04e+01 1mroC d.58.31.1 39439 1kjyB 36 3.41e+01 1rfmA 344 3.56e+01 c.122.1.1 97385 1bx4A 345 3.60e+01 1bx4A c.72.1.1 34935 1yjmA 110 3.77e+01 2d7uA 339 3.87e+01 1tis 286 3.88e+01 1bkpA d.117.1.1 41040 1mhsA 920 3.94e+01 i.18.1.1 79130 1usyH 208 4.11e+01 1kk3A 410 4.46e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1vixA 420 4.64e+01 c.56.5.4,d.58.19.1 100777,100778 1x4pA 66 4.71e+01 1gr0A 367 4.80e+01 c.2.1.3,d.81.1.3 70379,70380 1rlyA 60 4.95e+01 g.41.3.1 104988 1a6f 119 4.95e+01 1a6f d.14.1.2 37564 1dl6A 58 5.01e+01 1dl6A g.41.3.1 45207 1a97A 148 5.13e+01 1nulA c.61.1.1 34023 1a98A 152 5.14e+01 1nulA c.61.1.1 34021 1dms 781 5.23e+01 1dmr b.52.2.2,c.81.1.1 26906,35314 1t3qB 788 5.24e+01 d.41.1.1,d.133.1.1 106369,106370 1nulA 152 5.43e+01 1nulA c.61.1.1 34011 1eaxA 241 5.44e+01 b.47.1.2 64889 1wkvA 389 5.72e+01 1wscA 230 5.76e+01 2d4pA 141 5.77e+01 1jx0A 222 6.49e+01 d.36.1.1 71923 1vl8A 267 6.51e+01 c.2.1.2 108733 1hkvA 453 6.54e+01 b.49.2.3,c.1.6.1 83559,83560 2h03A 291 6.54e+01 1rlw 126 6.55e+01 1rlw b.7.1.1 23177 1yb2A 275 6.62e+01 1q6zA 528 6.65e+01 1ynoA 527 6.69e+01 1pi3A 528 6.69e+01 1bfd 528 6.70e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 2bhtA 303 6.74e+01 1bci 138 6.89e+01 1rlw b.7.1.1 23180 1vorL 132 6.96e+01 1ot2A 686 6.97e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87396,87397,87398,87399 1ot1A 686 7.07e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1vpqA 273 7.08e+01 1kclA 686 7.34e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68445,68446,68447,68448 1eo5A 686 7.34e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21828,22497,27735,28722 1pezA 686 7.36e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94600,94601,94602,94603 1cgy 686 7.42e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21823,22492,27730,28717 1cdg 686 7.42e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21816,22485,27723,28710 1cgw 686 7.42e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21822,22491,27729,28716 1cgv 686 7.43e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21820,22489,27727,28714 1d3cA 686 7.44e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1cxlA 686 7.44e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1pj9A 686 7.45e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94754,94755,94756,94757 1tcmA 686 7.45e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21833,22502,27740,28727 1cgx 686 7.48e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21832,22501,27739,28726 2ahsA 295 7.50e+01 1dtuA 686 7.58e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21840,22509,27747,28734 2h04A 313 7.78e+01 1kckA 686 7.78e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68441,68442,68443,68444 1ujxA 119 7.95e+01 b.26.1.2 99473 1nkwI 134 8.07e+01 i.1.1.2 80594 2ag0A 563 8.72e+01