# List of top-scoring protein chains for T0312.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xv2A 237 2.22e-03 1vizA 240 6.95e+00 c.1.4.1 100784 1sg5A 86 7.75e+00 1v0zA 389 8.52e+00 1gskA 513 1.05e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1vphA 149 1.37e+01 1viuA 203 1.63e+01 d.113.1.1 100771 1qgdA 662 1.70e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1yrvA 169 1.79e+01 1i8dA 213 1.92e+01 b.43.4.3,b.43.4.3 61953,61954 1y14B 171 2.36e+01 1rkuA 206 2.88e+01 c.108.1.11 97627 1dbqA 289 2.89e+01 1qpzA c.93.1.1 35666 1vpwA 340 2.92e+01 1qpzA a.35.1.5,c.93.1.1 17087,35680 1qqbA 340 2.92e+01 1qpzA a.35.1.5,c.93.1.1 17099,35674 1qpzA 340 2.94e+01 1qpzA a.35.1.5,c.93.1.1 17097,35673 2d2eA 250 2.94e+01 1v6fA 151 3.17e+01 d.109.1.2 108395 2ayiA 408 3.18e+01 1rfs 139 3.51e+01 1rfs b.33.1.1 24434 1ytmA 532 3.52e+01 1wfxA 186 3.63e+01 2pugA 340 3.64e+01 1qpzA a.35.1.5,c.93.1.1 17088,35683 1jftA 340 3.76e+01 a.35.1.5,c.93.1.1 66652,66653 2afrA 231 3.77e+01 1jhzA 289 4.03e+01 c.93.1.1 66731 2cuwA 84 4.03e+01 1jfsA 340 4.07e+01 a.35.1.5,c.93.1.1 66650,66651 1q90C 127 4.09e+01 b.33.1.1 96242 1jh9A 340 4.12e+01 a.35.1.5,c.93.1.1 66710,66711 1x3mA 415 4.18e+01 1nsnL 218 4.26e+01 8fabA b.1.1.1,b.1.1.2 20070,21102 1xsaA 153 4.53e+01 1va4A 279 4.66e+01 c.69.1.12 108458 1ve4A 206 4.75e+01 1iqoA 88 4.90e+01 d.214.1.1 71277 1yadA 221 4.93e+01 1a6zA 275 5.06e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1z4rA 168 5.13e+01 1pm7A 202 5.30e+01 b.82.1.1 94895 1wrvA 308 5.33e+01 2pucA 340 5.75e+01 1qpzA a.35.1.5,c.93.1.1 17094,35684 1vf5D 179 5.84e+01 b.33.1.1,f.23.12.1 100583,100584 1oa3A 218 6.19e+01 b.29.1.11 86727 1skxA 313 6.25e+01 1nrlA 316 6.30e+01 a.123.1.1 92091 1upiA 225 6.39e+01 b.82.1.1 99757 1zh8A 340 6.66e+01 1s1iT 83 6.70e+01 i.1.1.1 105194 1ijtA 128 6.73e+01 1bfg b.42.1.1 62510 1x3hA 80 6.73e+01 1t1jA 125 6.75e+01 c.137.1.1 106249 1fx8A 281 6.84e+01 f.19.1.1 43651 1cxyA 90 6.95e+01 1cyo d.120.1.1 41085 1g5cA 170 7.18e+01 1g5cA c.53.2.1 60264 1rh5A 436 7.25e+01 f.41.1.1 97464 1rhzA 436 7.29e+01 f.41.1.1 97495 1hr0W 71 7.48e+01 1ah9 b.40.4.5 25329 2fjmA 310 7.59e+01 1h0dA 216 7.72e+01 b.1.1.1,b.1.1.2 83425,83426 1naxA 252 8.08e+01 a.123.1.1 85501 1q4xA 253 8.09e+01 a.123.1.1 95833 1nwlA 298 8.12e+01 c.45.1.2 86300 1nq1A 263 8.13e+01 a.123.1.1 86006 1n46A 258 8.14e+01 a.123.1.1 85315 1r6gA 259 8.16e+01 1bsxA 260 8.17e+01 2lbd a.123.1.1 19330 1nq0A 263 8.21e+01 a.123.1.1 86005 1x1vA 141 8.31e+01 1xzxX 281 8.34e+01 1xsoA 150 8.37e+01 1mfmA b.1.8.1 22273 1c83A 298 8.44e+01 1pty c.45.1.2 32660 1ldfA 281 8.59e+01 f.19.1.1 73845 1c86A 298 8.70e+01 1pty c.45.1.2 32668 1l8gA 321 8.72e+01 c.45.1.2 73689 1gfyA 298 8.76e+01 1pty c.45.1.2 32666 1gxjA 186 8.87e+01 d.215.1.1 70707 1i8fA 81 8.92e+01 1i8fA b.38.1.1 61959