# List of top-scoring protein chains for T0307.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gwxA 267 3.72e-01 2prgA a.123.1.1 19323 2awhA 268 3.75e-01 3gwxA 271 3.80e-01 2prgA a.123.1.1 19325 1y0sA 272 3.82e-01 2b50A 272 3.85e-01 1zczA 464 9.01e-01 1vefA 395 1.13e+00 1v2wT 223 2.19e+00 b.47.1.2 108299 1h1dA 221 2.56e+00 c.66.1.1 83452 1eapB 216 3.98e+00 1mfa b.1.1.1,b.1.1.2 20015,21069 2gshA 414 4.25e+00 1z6hA 72 4.99e+00 487dL 133 5.03e+00 1mmsA i.1.1.2 45839 1jqmA 139 5.09e+00 i.1.1.1 63235 1eg0K 140 5.11e+00 1mmsA i.1.1.1 45817 1mmsA 140 5.11e+00 1mmsA a.4.7.1,d.47.1.1 16247,38766 1yl3L 141 5.12e+00 1wgsA 133 5.36e+00 1zchA 255 7.32e+00 1v2lT 223 7.76e+00 b.47.1.2 108288 1m6tA 106 7.99e+00 a.24.3.1 78705 2ex4A 241 8.28e+00 1v2sT 223 8.29e+00 b.47.1.2 108295 1gsoA 431 8.85e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1v2nT 223 1.04e+01 b.47.1.2 108290 1n25A 368 1.06e+01 c.37.1.20 85264 1v2rT 223 1.07e+01 b.47.1.2 108294 1svmA 377 1.07e+01 1v2oT 223 1.08e+01 b.47.1.2 108291 1xnfA 275 1.09e+01 1v2qT 223 1.11e+01 b.47.1.2 108293 1ksiA 642 1.15e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1w2zA 649 1.16e+01 1mjdA 113 1.23e+01 d.15.11.1 84977 1lrtA 376 1.36e+01 c.1.5.1 84685 1pvnA 376 1.38e+01 c.1.5.1 88312 1q5dA 419 1.44e+01 a.104.1.1 95891 1xctL 80 1.45e+01 1pkfA 419 1.45e+01 a.104.1.1 94829 2ftcG 145 1.49e+01 1dq3A 454 1.62e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1z15A 344 1.66e+01 1gzeA 211 1.73e+01 d.166.1.1 76414 1fyhB 229 1.81e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1g24A 211 1.83e+01 1g24A d.166.1.1 42270 1xf5L 80 1.83e+01 2a9kB 223 1.99e+01 1fg9C 245 1.99e+01 1jrhI b.1.2.1,b.1.2.1 22060,22061 1me8A 503 2.20e+01 c.1.5.1 79028 2bovB 251 2.22e+01 1j8fA 323 2.33e+01 1j8fA c.31.1.5 62738 2aw4I 141 2.38e+01 2ap1A 327 2.41e+01 1w68A 390 2.56e+01 a.25.1.2 109216 1dklA 410 2.59e+01 1dklA c.60.1.2 33996 2cw6A 298 2.62e+01 1ymhE 65 2.83e+01 1rl1A 114 2.85e+01 b.15.1.3 97635 1q5tA 122 2.93e+01 a.133.1.2 95932 1y59T 223 2.97e+01 2aywA 223 3.03e+01 2fi5E 223 3.08e+01 1ntp 223 3.13e+01 5ptp b.47.1.2 25858 1yumA 242 3.21e+01 2liv 344 3.25e+01 2liv c.93.1.1 35708 1ijdA 53 3.28e+01 f.3.1.1 66155 1g3dA 228 3.30e+01 5ptp b.47.1.2 25920 1dkmA 410 3.31e+01 1dklA c.60.1.2 34000 1dkqA 410 3.32e+01 1dklA c.60.1.2 33998 1sezA 504 3.34e+01 c.3.1.2,d.16.1.5 98822,98823 1bty 229 3.39e+01 5ptp b.47.1.2 25833 1hezE 61 3.44e+01 2ptl d.15.7.1 60991 1mhhE 63 3.48e+01 d.15.7.1 79127 1tuwA 109 3.66e+01 d.58.4.8 107346 2lbp 346 3.69e+01 2liv c.93.1.1 35709 1nz8A 119 3.78e+01 d.58.42.1 92363 1zzzA 237 3.79e+01 5ptp b.47.1.2 25892 1wybA 392 3.81e+01 1wycA 392 3.85e+01 1vlqA 337 3.87e+01 c.69.1.25 108848 1smqA 399 3.98e+01 a.25.1.2 105766 1jk0A 419 4.02e+01 a.25.1.2 63142 1utnA 243 4.16e+01 b.47.1.2 99967 1ue8A 367 4.23e+01 a.104.1.1 107781 1whyA 97 4.25e+01 1g4wR 383 4.28e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1oz9A 150 4.29e+01 d.92.1.15 93808 1en7A 157 4.30e+01 1en7A a.140.4.1,d.4.1.5 64733,64734 1t6oA 51 4.31e+01 a.8.5.1 106578 1iooA 196 4.36e+01 d.124.1.1 71250 2g07A 297 4.37e+01 1si8A 484 4.38e+01 e.5.1.1 98884 2g09A 297 4.39e+01 1e7lA 157 4.40e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1cnuA 137 4.44e+01 1cof d.109.1.2 40862 1o78A 84 4.45e+01 b.84.1.1 81130 1z91A 147 4.52e+01 1oksA 56 4.57e+01 a.8.5.1 93271 1ophB 243 4.66e+01 b.47.1.2 93405 1gzhB 249 4.80e+01 c.15.1.4,c.15.1.4 70808,70809 1fljA 260 4.92e+01 2cba b.74.1.1 27954 1q8fA 313 4.92e+01 c.70.1.1 96203 1kzyC 259 4.97e+01 c.15.1.4,c.15.1.4 73383,73384 1iu5A 53 5.17e+01 g.41.5.1 71434 1dxrH 258 5.26e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1prcH 259 5.31e+01 6prcH b.41.1.1,f.23.10.1 25460,43445 1r1hA 696 5.43e+01 d.92.1.4 104756 1ttwA 138 5.54e+01 d.198.1.1 107308 1prgA 270 5.58e+01 2prgA a.123.1.1 19314 1v8qA 85 5.59e+01 b.84.4.1 108428 2fvjA 271 5.60e+01 1mexH 215 5.62e+01 b.1.1.1,b.1.1.2 91257,91258 1fhuA 320 5.64e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1zgyA 272 5.64e+01 1dczA 77 5.66e+01 1iyu b.84.1.1 28219 1fhvA 323 5.66e+01 1fhuA c.1.11.2,d.54.1.1 29235,38879 1knuA 274 5.70e+01 a.123.1.1 77457 1r6wA 322 5.76e+01 c.1.11.2,d.54.1.1 97165,97166 1zeoA 277 5.79e+01 1nyxA 276 5.79e+01 a.123.1.1 86431 1k74D 283 5.82e+01 a.123.1.1 68252 2c46A 241 5.83e+01 3prgA 278 5.89e+01 2prgA a.123.1.1 19318 1wm0X 292 5.98e+01 a.123.1.1 109404 1rdtD 284 5.99e+01 1juoA 198 6.07e+01 a.39.1.8 67312 1i9sA 210 6.23e+01 1i9sA c.45.1.1 62099 1i7iA 292 6.29e+01 a.123.1.1 71125 1wewA 78 6.37e+01 1vh9A 149 6.65e+01 d.38.1.5 100653 1mc7A 95 6.83e+01 b.36.1.1 91241 1lfkA 398 6.84e+01 a.104.1.1 77926 1ry2A 663 6.90e+01 e.23.1.1 98083 1vf5C 289 6.97e+01 b.2.6.1,b.84.2.2,f.23.23.1 100580,100581,100582 256bA 106 6.99e+01 256bA a.24.3.1 16539 1g5vA 88 7.04e+01 1g5vA b.34.9.1 60292 2cshA 110 7.12e+01 1z1mA 119 7.17e+01 1xr4A 509 7.21e+01 1pxqA 35 7.29e+01 j.5.1.2 104382 2c2xA 281 7.34e+01 1edg 380 7.75e+01 1edg c.1.8.3 28807 1s04A 110 7.76e+01 1xhbA 472 7.88e+01 1wu9A 80 7.91e+01 1odkA 235 8.10e+01 c.56.2.1 86863 2c7nA 74 8.27e+01 1ixrA 191 8.30e+01 a.60.2.1,b.40.4.2 76925,76926 1txqB 86 8.32e+01 1rmfH 216 8.66e+01 1igtB b.1.1.1,b.1.1.2 20029,21083 1lg4A 129 8.67e+01 d.6.1.1 77952