# List of top-scoring protein chains for T0292.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zmuA 327 3.90e-35 2fh9A 274 5.90e-35 1h1rA 303 6.27e-35 d.144.1.7 76489 1oiuA 302 6.28e-35 d.144.1.7 103958 1vywA 309 6.49e-35 d.144.1.7 108922 1zmvA 327 7.37e-35 1qmzA 299 7.59e-35 1hcl d.144.1.7 41604 1w98A 298 7.68e-35 1pkdA 297 7.82e-35 d.144.1.7 88141 1gz8A 299 7.90e-35 d.144.1.7 83405 1jvpP 298 9.17e-35 d.144.1.7 67371 1y8gA 327 1.10e-34 1oitA 299 1.17e-34 d.144.1.7 93075 1giiA 298 1.19e-34 d.144.1.7 65218 2eueA 275 1.46e-34 1a06 332 2.17e-34 1tkiA d.144.1.7 41634 1fotA 318 2.84e-34 1cdkA d.144.1.7 59938 1ol5A 282 6.93e-34 d.144.1.7 93310 1muoA 297 7.02e-34 d.144.1.7 85110 1gzkA 315 7.07e-34 d.144.1.7 83406 1gznA 335 7.20e-34 d.144.1.7 83407 1o6kA 336 7.20e-34 d.144.1.7 81091 1mryA 339 7.22e-34 d.144.1.7 91451 1o6lA 337 7.34e-34 d.144.1.7 81092 1mq4A 272 7.72e-34 d.144.1.7 91391 2c6dA 275 7.90e-34 2c6eA 283 7.91e-34 1yhwA 297 9.16e-34 1yhvA 297 1.19e-33 2bmcA 306 1.22e-33 2bdwA 362 1.38e-33 1xjdA 345 1.78e-33 1ol6A 282 1.78e-33 d.144.1.7 93311 1xh9A 350 5.41e-33 1q61A 350 6.73e-33 d.144.1.7 95955 1cdkA 350 6.79e-33 1cdkA d.144.1.7 41620 1cmkE 351 6.79e-33 1cdkA d.144.1.7 41623 1ctpE 350 7.33e-33 1cdkA d.144.1.7 41622 1xh8A 350 1.07e-32 2c1aA 351 1.07e-32 1smhA 350 1.19e-32 d.144.1.7 105757 2bfxA 284 1.19e-32 2f57A 317 1.25e-32 2bfyA 284 1.37e-32 1q62A 350 1.47e-32 d.144.1.7 95956 2bvaA 292 1.66e-32 2cdzA 303 1.67e-32 1v0oA 288 1.68e-32 d.144.1.7 100243 1ydrE 350 1.71e-32 1cdkA d.144.1.7 41624 1v0bA 288 1.77e-32 d.144.1.7 100241 1ob3A 288 2.03e-32 d.144.1.7 92747 1jbpE 350 2.86e-32 1cdkA d.144.1.7 62849 1ua2A 346 3.04e-32 1l3rE 350 3.27e-32 d.144.1.7 73552 2erzE 351 3.27e-32 1ql6A 298 3.58e-32 1cdkA d.144.1.7 41636 1h4lA 292 4.00e-32 d.144.1.7 70871 1phk 298 4.24e-32 1cdkA d.144.1.7 41635 1opjA 293 4.65e-32 d.144.1.7 87230 1unlA 292 4.80e-32 2c30A 321 4.80e-32 2f4jA 287 5.30e-32 1u7eA 350 5.46e-32 1apmE 350 5.59e-32 1cdkA d.144.1.7 41628 1blxA 326 5.61e-32 1hcl d.144.1.7 41596 1zrzA 364 5.67e-32 1sykA 350 6.11e-32 2phkA 277 6.20e-32 1cdkA d.144.1.7 41637 1xo2B 308 6.36e-32 1opkA 495 1.08e-31 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 2evaA 307 1.19e-31 2fo0A 495 1.19e-31 1oplA 537 1.20e-31 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 1vzoA 355 1.68e-31 d.144.1.7 108971 1rdqE 350 2.11e-31 d.144.1.7 97314 1z5mA 286 2.65e-31 1h1wA 289 2.65e-31 d.144.1.7 83460 1uu9A 286 2.66e-31 d.144.1.7 100002 1uu3A 310 2.71e-31 d.144.1.7 99999 2etrA 415 2.91e-31 1jpaA 312 3.11e-31 d.144.1.7 67011 1jksA 294 3.61e-31 d.144.1.7 71710 1p4fA 293 3.61e-31 d.144.1.7 104063 1cm8A 367 3.76e-31 1hcl d.144.1.7 41651 1fmk 452 3.77e-31 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1y57A 452 3.80e-31 1pmnA 364 3.87e-31 d.144.1.7 94907 2biyA 310 3.93e-31 1jnk 423 4.01e-31 1hcl d.144.1.7 41659 1u5rA 348 4.55e-31 1qpcA 279 4.92e-31 1fgkA d.144.1.7 41685 1wvwA 278 5.03e-31 1yolA 283 5.07e-31 2baqA 365 5.18e-31 2ptk 453 5.40e-31 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24517,40457,41692 3lck 271 5.47e-31 1fmk d.144.1.7 41686 1yojA 283 6.01e-31 1s9jA 341 6.35e-31 1kswA 452 6.80e-31 b.34.2.1,d.93.1.1,d.144.1.7 68860,68861,68862 1yi6A 276 6.87e-31 1ukhA 369 7.02e-31 d.144.1.7 107913 1zzlA 351 7.84e-31 1wbsA 360 7.91e-31 2balA 365 7.92e-31 1ian 366 7.92e-31 1hcl d.144.1.7 41645 1oz1A 372 7.93e-31 d.144.1.7 93780 2gfsA 372 7.93e-31 1a9u 379 7.93e-31 1hcl d.144.1.7 41646 1yqjA 366 7.94e-31 1lewA 360 8.00e-31 d.144.1.7 73875 1p38 379 8.03e-31 1hcl d.144.1.7 41650 2f2uA 402 9.11e-31 1mqbA 333 9.46e-31 d.144.1.7 91392 2ghlA 348 1.01e-30 1yw2A 360 1.02e-30 1ywrA 360 1.05e-30 1r3cA 366 1.05e-30 d.144.1.7 96906 2acxA 576 1.07e-30 2br1A 297 1.18e-30 1ia8A 289 1.18e-30 1ia8A d.144.1.7 62112 1mp8A 281 1.24e-30 d.144.1.7 91384 1s9iA 354 1.31e-30 1qcfA 454 1.32e-30 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24498,40490,41680 2b9fA 353 1.39e-30 1tvoA 368 1.52e-30 1wzyA 368 1.54e-30 3erk 364 1.54e-30 1hcl d.144.1.7 41654 2b9hA 353 1.61e-30 1qpdA 279 1.67e-30 1fmk d.144.1.7 41687 2erk 365 1.81e-30 1hcl d.144.1.7 41655 1wmkA 321 2.01e-30 2g01A 370 2.03e-30 1fgkA 310 2.05e-30 1fgkA d.144.1.7 41693 1koa 491 2.40e-30 1tkiA b.1.1.4,d.144.1.7 21712,41642 1mruA 311 2.48e-30 d.144.1.7 79425 1pme 380 2.63e-30 1hcl d.144.1.7 41653 1gol 364 3.00e-30 1hcl d.144.1.7 41658 1o6yA 299 3.13e-30 d.144.1.7 81106 1fvrA 327 3.70e-30 d.144.1.7 60047 1k9aA 450 5.39e-30 b.34.2.1,d.93.1.1,d.144.1.7 72188,72189,72190 1sm2A 264 5.81e-30 d.144.1.7 105754 1lufA 343 6.24e-30 d.144.1.7 78223 1bygA 278 6.60e-30 1fmk d.144.1.7 41705 1oecA 316 8.59e-30 1irk 306 9.66e-30 1fmk d.144.1.7 41703 2b4sB 306 1.16e-29 1ir3A 306 1.18e-29 1fmk d.144.1.7 41702 1kobA 387 1.27e-29 1tkiA d.144.1.7 41640 1t46A 313 1.31e-29 d.144.1.7 106397 1t45A 331 1.33e-29 d.144.1.7 106396 1pkgA 329 1.34e-29 d.144.1.7 94830 1ad5A 438 1.38e-29 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24505,40491,41681 1i44A 306 1.57e-29 1fmk d.144.1.7 61664 2g15A 318 1.69e-29 2ac5A 316 1.72e-29 1p14A 306 2.09e-29 d.144.1.7 87660 1r0pA 312 2.91e-29 d.144.1.7 96734 1uwjA 276 2.99e-29 d.144.1.7 100125 1jqhA 308 3.06e-29 d.144.1.7 71793 1m7nA 322 3.15e-29 d.144.1.7 78738 1p4oA 322 3.25e-29 d.144.1.7 87775 1k2pA 263 3.46e-29 d.144.1.7 72012 1k3aA 299 3.69e-29 d.144.1.7 68098 1uwhA 276 3.73e-29 d.144.1.7 100123 1u46A 291 4.22e-29 d.144.1.7 107656 1u54A 291 4.54e-29 d.144.1.7 107675 1gngA 378 4.74e-29 d.144.1.7 76239 2ac3A 316 4.88e-29 1r0eA 391 4.94e-29 1q5kA 414 5.00e-29 d.144.1.7 104537 1j1bA 420 5.01e-29 d.144.1.7 90758 1pyxA 422 5.01e-29 d.144.1.7 95383 1q41A 424 5.02e-29 d.144.1.7 95774 1o9uA 350 5.68e-29 d.144.1.7 92691 1uv5A 350 5.73e-29 d.144.1.7 100029 1h8fB 350 5.92e-29 d.144.1.7 65734 1h8fA 352 5.94e-29 d.144.1.7 65733 2b7aA 293 6.07e-29 1zy4A 303 6.76e-29 1vr2A 316 9.12e-29 1fgkA d.144.1.7 41701 1ywnA 316 9.30e-29 1rjbA 344 9.36e-29 d.144.1.7 97557 1yvjA 290 1.12e-28 1y6bA 366 1.37e-28 1zydA 303 1.51e-28 1omwA 689 2.06e-28 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1t4hA 290 3.12e-28 d.144.1.7 106420 1zxeA 303 3.31e-28 1nxkA 400 3.92e-28 d.144.1.7 92302 1m14A 333 4.21e-28 d.144.1.7 78367 1xkkA 352 4.22e-28 1xbbA 291 4.44e-28 1u59A 287 4.70e-28 d.144.1.7 107681 1yxsA 293 1.02e-27 2a19B 284 1.19e-27 1yxtA 293 1.96e-27 1xqzA 300 2.02e-27 1yhsA 273 2.06e-27 2bikB 313 2.06e-27 1xwsA 313 2.10e-27 1ymiA 334 5.61e-27 1jwhA 337 1.46e-26 d.144.1.7 71913 1pjkA 334 1.48e-26 d.144.1.7 88122 1om1A 332 1.95e-26 d.144.1.7 93347 1m2rA 327 2.14e-26 d.144.1.7 84760 1m2pA 325 2.33e-26 d.144.1.7 84758 1tkiA 321 2.41e-26 1tkiA d.144.1.7 41638 1na7A 329 2.59e-26 d.144.1.7 91752 1z57A 339 4.33e-26 2bujA 317 6.07e-26 1howA 373 1.01e-24 1hcl d.144.1.7 41679 1q8yA 373 1.05e-24 d.144.1.7 96234 1x8bA 289 3.62e-24 2eu9A 355 3.81e-24 2exeA 357 3.96e-24 1wbpA 397 2.93e-23 1vjyA 303 3.05e-22 d.144.1.7 108633 1rw8A 301 3.28e-22 1b6cB 342 3.38e-22 1b6cB d.144.1.7 41673 1py5A 326 3.46e-22 d.144.1.7 104389 1ckiA 317 2.41e-21 1csn d.144.1.7 41660 2chlA 351 4.19e-20 2c47A 313 4.56e-20 2csn 297 1.25e-18 1csn d.144.1.7 41665 1csn 298 1.26e-18 1csn d.144.1.7 41664 1zarA 282 3.68e-05 1zthA 258 2.11e-02 1mb8A 243 1.89e+00 a.40.1.1,a.40.1.1 84925,84926 1sh5A 245 3.76e+00 a.40.1.1,a.40.1.1 105543,105544 1xjjA 644 3.83e+00 1nw1A 429 3.90e+00 d.144.1.8 86286 1j5cA 98 5.17e+00 b.6.1.1 71541 1m9wA 98 5.23e+00 b.6.1.1 74604 2ahbA 356 5.35e+00 1oy5A 257 5.72e+00 c.116.1.4 93718 1pcs 98 6.28e+00 1plc b.6.1.1 22871 2ckgA 225 6.69e+00 1u6eA 335 8.19e+00 1xiqA 157 8.66e+00 1hzpA 335 8.66e+00 1hn9A c.95.1.2,c.95.1.2 61455,61456 1m1mA 355 8.87e+00 c.95.1.2,c.95.1.2 74409,74410 1kb9C 385 9.79e+00 f.32.1.1,f.21.1.2 77315,77316 1b48A 221 1.13e+01 1pgtA a.45.1.1,c.47.1.5 17703,32997 1gukA 222 1.13e+01 1pgtA a.45.1.1,c.47.1.5 17705,32999 2aj9A 356 1.21e+01 1u7tA 261 1.36e+01 1so8A 261 1.42e+01 c.2.1.2 98940 1g0cA 364 1.63e+01 7a3hA c.1.8.3 60165 1ox6A 555 1.68e+01 c.1.2.1,c.23.16.1 87505,87506 2ashA 381 1.96e+01 1fb7A 99 1.99e+01 1hvc b.50.1.1 26683 1ulsA 245 2.11e+01 2a0zA 705 2.14e+01 1ziwA 680 2.16e+01 1jb3A 131 2.20e+01 1jc7A b.40.3.2 62833 1pxuA 131 2.21e+01 b.40.3.2 104383 1jc7A 131 2.21e+01 1jc7A b.40.3.2 62873 2a8xA 464 2.23e+01 1a28A 256 2.28e+01 1a28A a.123.1.1 19290 1sr7A 259 2.30e+01 a.123.1.1 105957 1e3kA 258 2.30e+01 1a28A a.123.1.1 59193 1sqnA 261 2.35e+01 a.123.1.1 105944 1tzna 181 2.48e+01 1shuX 182 2.49e+01 c.62.1.1 98882 2gb3A 409 2.51e+01 2ct6A 111 2.52e+01 1shtX 181 2.57e+01 c.62.1.1 98881 1qb0A 211 2.93e+01 1c25 c.46.1.1 32699 1ri6A 343 3.13e+01 b.69.11.1 97503 1be4A 151 3.24e+01 1npk d.58.6.1 39090 1be4C 152 3.25e+01 1npk d.58.6.1 39092 1jvnA 555 3.30e+01 c.1.2.1,c.23.16.1 67355,67356 1xxxA 303 3.32e+01 2a3qA 170 3.36e+01 2dfkA 402 3.59e+01 1t6bY 189 3.68e+01 c.62.1.1 106557 2bkwA 385 4.43e+01 1nhs 447 4.62e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1m5yA 408 4.71e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1dcqA 278 4.80e+01 1dcqA d.211.1.1,g.45.1.1 19178,45326 1bf6A 291 4.91e+01 1pscA c.1.9.3 29065 1w2dA 265 4.96e+01 d.143.1.3 109121 1w2fA 276 5.05e+01 d.143.1.3 109125 1a03A 90 5.21e+01 4icb a.39.1.2 17157 1wueA 386 5.24e+01 1qvzA 237 5.37e+01 c.23.16.2 96453 1a0dA 440 5.46e+01 1a0cA c.1.15.3 29533 1y97A 238 5.49e+01 1zblA 139 5.64e+01 2g8fA 142 5.67e+01 2b30A 301 5.69e+01 1odxA 99 5.74e+01 1fmb b.50.1.1 26577 2etvA 346 5.80e+01 2g8iA 142 5.81e+01 1bhnA 152 5.90e+01 1npk d.58.6.1 39093 1nueA 151 6.00e+01 1npk d.58.6.1 39076 1nskL 152 6.03e+01 1npk d.58.6.1 39083 1wstA 417 6.04e+01 1qvvA 237 6.12e+01 c.23.16.2 96442 1rw7A 243 6.19e+01 c.23.16.2 97963 1ef8A 261 6.36e+01 1ef8A c.14.1.3 30921 1qakA 722 6.37e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24392,38011,38012,40005 1j1iA 296 6.39e+01 c.69.1.10 83977 2g5cA 281 6.42e+01 1ceaA 88 6.45e+01 5hpgA g.14.1.1 44644 1zkdA 387 6.47e+01 1itwA 741 6.68e+01 c.77.1.2 76793 2ftzA 284 6.70e+01 1bwlA 399 6.91e+01 1oyc c.1.4.1 28606 1ry6A 360 7.00e+01 c.37.1.9 98090 1bcsB 160 7.16e+01 1whtB 1g291 372 7.31e+01 1g291 1b23P 405 7.36e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 1eft 405 7.39e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1dlgA 419 7.42e+01 1uae d.68.2.2 39580 1e6mA 128 7.45e+01 3chy c.23.1.1 31039 2bkkA 264 7.45e+01 1jfsA 340 7.52e+01 a.35.1.5,c.93.1.1 66650,66651 1e3wA 261 7.62e+01 1e6wA c.2.1.2 59207 1ad9B 219 7.65e+01 1gc1H b.1.1.1,b.1.1.2 20215,21227 1rv6V 101 7.80e+01 g.17.1.1 97912 1whsB 153 7.82e+01 1whtB 1f3aA 222 7.88e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 3sc2B 152 8.00e+01 1whtB 1f3wA 530 8.24e+01 b.58.1.1,c.1.12.1,c.49.1.1 64934,64935,64936 1f3xA 530 8.25e+01 b.58.1.1,c.1.12.1,c.49.1.1 64958,64959,64960 1ygpA 879 8.29e+01 1a8i c.87.1.4 35540 1l8tA 263 8.40e+01 d.144.1.6 73702 1j7lA 264 8.43e+01 d.144.1.6 62697 1e6wA 260 8.58e+01 1e6wA c.2.1.2 59326 1e3sA 261 8.62e+01 1e6wA c.2.1.2 59201 1zbfA 142 8.62e+01 1wouA 123 8.72e+01 c.47.1.16 109471 1nfiA 301 8.73e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455 1aipA 405 8.75e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1aaqA 99 8.78e+01 1fmb b.50.1.1 26688 1r6bX 758 8.85e+01 a.174.1.1,c.37.1.20,c.37.1.20 104818,104819,104820 1a49A 530 8.88e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2ch9A 131 8.92e+01 2c78A 405 8.95e+01 1exmA 405 8.97e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131