sed -e s/TARGET/T0283/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0283/undertaker-sheets.costfcn ; sed -e s/TARGET/T0288/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0288/undertaker-sheets.costfcn ; sed -e s/TARGET/T0289/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0289/undertaker-sheets.costfcn ; sed -e s/TARGET/T0290/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0290/undertaker-sheets.costfcn ; sed -e s/TARGET/T0291/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0291/undertaker-sheets.costfcn ; sed -e s/TARGET/T0292/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0292/undertaker-sheets.costfcn ; sed -e s/TARGET/T0293/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0293/undertaker-sheets.costfcn ; sed -e s/TARGET/T0295/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0295/undertaker-sheets.costfcn ; sed -e s/TARGET/T0296/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0296/undertaker-sheets.costfcn ; sed -e s/TARGET/T0297/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0297/undertaker-sheets.costfcn ; sed -e s/TARGET/T0298/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0298/undertaker-sheets.costfcn ; sed -e s/TARGET/T0299/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0299/undertaker-sheets.costfcn ; sed -e s/TARGET/T0300/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0300/undertaker-sheets.costfcn ; sed -e s/TARGET/T0301/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0301/undertaker-sheets.costfcn ; sed -e s/TARGET/T0302/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0302/undertaker-sheets.costfcn ; sed -e s/TARGET/T0303/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0303/undertaker-sheets.costfcn ; sed -e s/TARGET/T0304/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0304/undertaker-sheets.costfcn ; sed -e s/TARGET/T0305/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0305/undertaker-sheets.costfcn ; sed -e s/TARGET/T0306/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0306/undertaker-sheets.costfcn ; sed -e s/TARGET/T0307/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0307/undertaker-sheets.costfcn ; sed -e s/TARGET/T0308/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0308/undertaker-sheets.costfcn ; sed -e s/TARGET/T0309/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0309/undertaker-sheets.costfcn ; sed -e s/TARGET/T0311/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0311/undertaker-sheets.costfcn ; sed -e s/TARGET/T0312/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0312/undertaker-sheets.costfcn ; sed -e s/TARGET/T0313/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0313/undertaker-sheets.costfcn ; sed -e s/TARGET/T0314/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0314/undertaker-sheets.costfcn ; sed -e s/TARGET/T0315/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0315/undertaker-sheets.costfcn ; sed -e s/TARGET/T0316/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0316/undertaker-sheets.costfcn ; sed -e s/TARGET/T0317/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0317/undertaker-sheets.costfcn ; sed -e s/TARGET/T0318/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0318/undertaker-sheets.costfcn ; sed -e s/TARGET/T0319/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0319/undertaker-sheets.costfcn ; sed -e s/TARGET/T0321/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0321/undertaker-sheets.costfcn ; sed -e s/TARGET/T0322/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0322/undertaker-sheets.costfcn ; sed -e s/TARGET/T0323/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0323/undertaker-sheets.costfcn ; sed -e s/TARGET/T0324/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0324/undertaker-sheets.costfcn ; sed -e s/TARGET/T0325/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0325/undertaker-sheets.costfcn ; sed -e s/TARGET/T0326/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0326/undertaker-sheets.costfcn ; sed -e s/TARGET/T0327/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0327/undertaker-sheets.costfcn ; sed -e s/TARGET/T0328/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0328/undertaker-sheets.costfcn ; sed -e s/TARGET/T0329/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0329/undertaker-sheets.costfcn ; sed -e s/TARGET/T0330/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0330/undertaker-sheets.costfcn ; sed -e s/TARGET/T0331/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0331/undertaker-sheets.costfcn ; sed -e s/TARGET/T0332/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0332/undertaker-sheets.costfcn ; sed -e s/TARGET/T0335/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0335/undertaker-sheets.costfcn ; sed -e s/TARGET/T0338/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0338/undertaker-sheets.costfcn ; sed -e s/TARGET/T0339/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0339/undertaker-sheets.costfcn ; sed -e s/TARGET/T0340/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0340/undertaker-sheets.costfcn ; sed -e s/TARGET/T0341/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0341/undertaker-sheets.costfcn ; sed -e s/TARGET/T0342/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0342/undertaker-sheets.costfcn ; sed -e s/TARGET/T0345/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0345/undertaker-sheets.costfcn ; sed -e s/TARGET/T0346/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0346/undertaker-sheets.costfcn ; sed -e s/TARGET/T0347/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0347/undertaker-sheets.costfcn ; sed -e s/TARGET/T0348/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0348/undertaker-sheets.costfcn ; sed -e s/TARGET/T0349/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0349/undertaker-sheets.costfcn ; sed -e s/TARGET/T0350/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0350/undertaker-sheets.costfcn ; sed -e s/TARGET/T0351/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0351/undertaker-sheets.costfcn ; sed -e s/TARGET/T0353/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0353/undertaker-sheets.costfcn ; sed -e s/TARGET/T0354/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0354/undertaker-sheets.costfcn ; sed -e s/TARGET/T0356/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0356/undertaker-sheets.costfcn ; sed -e s/TARGET/T0357/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0357/undertaker-sheets.costfcn ; sed -e s/TARGET/T0358/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0358/undertaker-sheets.costfcn ; sed -e s/TARGET/T0359/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0359/undertaker-sheets.costfcn ; sed -e s/TARGET/T0360/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0360/undertaker-sheets.costfcn ; sed -e s/TARGET/T0361/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0361/undertaker-sheets.costfcn ; sed -e s/TARGET/T0362/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0362/undertaker-sheets.costfcn ; sed -e s/TARGET/T0363/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0363/undertaker-sheets.costfcn ; sed -e s/TARGET/T0364/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0364/undertaker-sheets.costfcn ; sed -e s/TARGET/T0365/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0365/undertaker-sheets.costfcn ; sed -e s/TARGET/T0367/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0367/undertaker-sheets.costfcn ; sed -e s/TARGET/T0368/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0368/undertaker-sheets.costfcn ; sed -e s/TARGET/T0369/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0369/undertaker-sheets.costfcn ; sed -e s/TARGET/T0370/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0370/undertaker-sheets.costfcn ; sed -e s/TARGET/T0371/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0371/undertaker-sheets.costfcn ; sed -e s/TARGET/T0372/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0372/undertaker-sheets.costfcn ; sed -e s/TARGET/T0373/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0373/undertaker-sheets.costfcn ; sed -e s/TARGET/T0374/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0374/undertaker-sheets.costfcn ; sed -e s/TARGET/T0375/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0375/undertaker-sheets.costfcn ; sed -e s/TARGET/T0376/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0376/undertaker-sheets.costfcn ; sed -e s/TARGET/T0378/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0378/undertaker-sheets.costfcn ; sed -e s/TARGET/T0379/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0379/undertaker-sheets.costfcn ; sed -e s/TARGET/T0380/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0380/undertaker-sheets.costfcn ; sed -e s/TARGET/T0381/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0381/undertaker-sheets.costfcn ; sed -e s/TARGET/T0382/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0382/undertaker-sheets.costfcn ; sed -e s/TARGET/T0383/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0383/undertaker-sheets.costfcn ; sed -e s/TARGET/T0384/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0384/undertaker-sheets.costfcn ; sed -e s/TARGET/T0385/g < undertaker-sheets.costfcn > /projects/compbio/experiments/protein-predict/casp7/T0385/undertaker-sheets.costfcn ; date Fri Sep 7 19:10:52 PDT 2007 para-trickle-make -manyids -se2log -no2letter -modelsdir /projects/compbio/experiments/protein-predict/casp7 \ -makefile ./Makefile -target decoys/predictions.evaluate.undertaker-sheets.rdb \ -wait \ < /projects/compbio/experiments/protein-predict/casp7/target_list.txt para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-moai-karplus-22038-38882649/README for more info. para-trickle-make: There were 1 jobs that crashed. para-trickle-make: See /projects/compbio/tmp/para-trickle-make-moai-karplus-22038-38882649/README for more help. date Sat Sep 8 03:27:53 PDT 2007 echo undertaker-sheets.evaluate done undertaker-sheets.evaluate done date Sat Sep 8 03:27:53 PDT 2007 make -k undertaker-sheets-gdt-tau.rdb undertaker-sheets-gdt-tau.avg undertaker-sheets-gdt-btr.rdb undertaker-sheets-gdt-btr.avg undertaker-sheets-real_cost-tau.rdb undertaker-sheets-real_cost-tau.avg undertaker-sheets-real_cost-btr.rdb undertaker-sheets-real_cost-btr.avg make[1]: Entering directory `/projects/compbio/experiments/protein-predict/CostFcnEval' time cfneval.pl -s decoys/predictions.evaluate.undertaker-sheets.rdb -f0 > undertaker-sheets-gdt-tau.rdb unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.undertaker-sheets.rdb: No such file or directory real 0m4.711s user 0m0.892s sys 0m0.026s make[1]: *** [undertaker-sheets-gdt-tau.rdb] Error 2 make[1]: Target `undertaker-sheets-gdt-tau.avg' not remade because of errors. time cfneval.pl -s decoys/predictions.evaluate.undertaker-sheets.rdb -f0 -r btr > undertaker-sheets-gdt-btr.rdb unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.undertaker-sheets.rdb: No such file or directory real 0m1.098s user 0m0.556s sys 0m0.019s make[1]: *** [undertaker-sheets-gdt-btr.rdb] Error 2 make[1]: Target `undertaker-sheets-gdt-btr.avg' not remade because of errors. time cfneval.pl -s decoys/predictions.evaluate.undertaker-sheets.rdb -f20 -q real_cost > undertaker-sheets-real_cost-tau.rdb unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.undertaker-sheets.rdb: No such file or directory real 0m1.616s user 0m0.905s sys 0m0.008s make[1]: *** [undertaker-sheets-real_cost-tau.rdb] Error 2 make[1]: Target `undertaker-sheets-real_cost-tau.avg' not remade because of errors. time cfneval.pl -s decoys/predictions.evaluate.undertaker-sheets.rdb -f20 -q real_cost -r btr > undertaker-sheets-real_cost-btr.rdb unable to open /projects/compbio/experiments/protein-predict/casp7//T0305/decoys/predictions.evaluate.undertaker-sheets.rdb: No such file or directory real 0m1.189s user 0m0.578s sys 0m0.012s make[1]: *** [undertaker-sheets-real_cost-btr.rdb] Error 2 make[1]: Target `undertaker-sheets-real_cost-btr.avg' not remade because of errors. make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/CostFcnEval' make: *** [undertaker-sheets.summarize] Error 2