# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/ # command:# Making conformation for sequence T0343 numbered 1 through 104 Created new target T0343 from T0343.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)Y47.CB) [> 3.4868 = 5.8113 < 7.5547] w=1.0000 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)V49.CB) [> 3.4247 = 5.7079 < 7.4202] w=0.8979 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)W46.CB) [> 3.8361 = 6.3934 < 8.3115] w=0.8829 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V49.CB) [> 3.7756 = 6.2926 < 8.1804] w=0.8346 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)K48.CB) [> 3.8305 = 6.3843 < 8.2995] w=0.8128 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)V49.CB) [> 3.6187 = 6.0311 < 7.8405] w=0.8032 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)K48.CB) [> 4.2575 = 7.0959 < 9.2247] w=0.7844 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)Y47.CB) [> 4.1607 = 6.9345 < 9.0149] w=0.7730 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)I38.CB) [> 4.0314 = 6.7189 < 8.7346] w=0.7412 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)Y39.CB) [> 4.0569 = 6.7615 < 8.7900] w=0.7365 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)I38.CB) [> 3.5949 = 5.9915 < 7.7890] w=0.7237 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)K48.CB) [> 4.0384 = 6.7307 < 8.7499] w=0.7114 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)A37.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.7035 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)K48.CB) [> 3.8773 = 6.4622 < 8.4008] w=0.7001 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L36.CB) [> 3.8931 = 6.4884 < 8.4350] w=0.6409 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)T35.CB) [> 4.1100 = 6.8500 < 8.9050] w=0.6322 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)E50.CB) [> 3.1550 = 5.2584 < 6.8359] w=0.6310 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)V49.CB) [> 4.3436 = 7.2394 < 9.4112] w=0.6296 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)A37.CB) [> 3.5475 = 5.9125 < 7.6863] w=0.6171 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)L36.CB) [> 3.8817 = 6.4695 < 8.4104] w=0.6056 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)Y39.CB) [> 3.9044 = 6.5074 < 8.4596] w=0.5954 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)K41.CB) [> 3.9484 = 6.5806 < 8.5548] w=0.5874 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)I38.CB) [> 3.9193 = 6.5321 < 8.4917] w=0.5681 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)K41.CB) [> 4.1224 = 6.8706 < 8.9319] w=0.5615 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)Y39.CB) [> 3.1755 = 5.2925 < 6.8802] w=0.5585 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A37.CB) [> 3.2655 = 5.4426 < 7.0753] w=0.5564 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)L36.CB) [> 4.0947 = 6.8246 < 8.8719] w=0.5562 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)T35.CB) [> 3.2926 = 5.4876 < 7.1339] w=0.5483 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A37.CB) [> 3.6177 = 6.0295 < 7.8383] w=0.5456 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)L36.CB) [> 3.8210 = 6.3683 < 8.2788] w=0.5350 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)E50.CB) [> 3.9392 = 6.5654 < 8.5350] w=0.5022 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)I38.CB) [> 4.1499 = 6.9164 < 8.9914] w=0.4744 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)P34.CB) [> 3.5969 = 5.9948 < 7.7933] w=0.4730 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)Y39.CB) [> 4.3162 = 7.1937 < 9.3518] w=0.4707 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)T35.CB) [> 3.4827 = 5.8045 < 7.5458] w=0.4670 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)E51.CB) [> 4.0125 = 6.6875 < 8.6937] w=0.4657 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)D40.CB) [> 4.0411 = 6.7351 < 8.7556] w=0.4649 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)Y39.CB) [> 3.9630 = 6.6051 < 8.5866] w=0.4382 to align # Constraint # added constraint: constraint((T0343)E17.CB, (T0343)D40.CB) [> 3.9014 = 6.5023 < 8.4530] w=0.4377 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)D40.CB) [> 3.8347 = 6.3912 < 8.3086] w=0.4303 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)W64.CB) [> 3.2654 = 5.4423 < 7.0750] w=0.3940 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)T35.CB) [> 4.2518 = 7.0863 < 9.2122] w=0.3863 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)P34.CB) [> 4.1746 = 6.9576 < 9.0449] w=0.3830 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)L36.CB) [> 3.5159 = 5.8598 < 7.6178] w=0.3735 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)P34.CB) [> 3.7791 = 6.2985 < 8.1881] w=0.3684 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)A52.CB) [> 3.6104 = 6.0174 < 7.8226] w=0.3683 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)A37.CB) [> 4.5025 = 7.5041 < 9.7554] w=0.3640 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)K41.CB) [> 4.3942 = 7.3237 < 9.5208] w=0.3590 to align # Constraint # added constraint: constraint((T0343)A52.CB, (T0343)A61.CB) [> 4.3236 = 7.2060 < 9.3678] w=0.3567 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)I38.CB) [> 3.0749 = 5.1248 < 6.6623] w=0.3544 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)V91.CB) [> 3.0453 = 5.0755 < 6.5982] w=0.3288 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)E51.CB) [> 4.0078 = 6.6797 < 8.6836] w=0.3247 to align # Constraint # added constraint: constraint((T0343)P33.CB, (T0343)A52.CB) [> 3.7510 = 6.2517 < 8.1272] w=0.3162 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A61.CB) [> 3.7059 = 6.1766 < 8.0295] w=0.3094 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)V78.CB) [> 3.8828 = 6.4714 < 8.4128] w=0.3017 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)L69.CB) [> 4.0786 = 6.7977 < 8.8370] w=0.2893 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A65.CB) [> 3.7578 = 6.2630 < 8.1419] w=0.2885 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)L69.CB) [> 4.5099 = 7.5164 < 9.7714] w=0.2807 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)I72.CB) [> 3.3966 = 5.6610 < 7.3594] w=0.2807 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)L83.CB) [> 2.9876 = 4.9793 < 6.4731] w=0.2770 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)R94.CB) [> 3.9353 = 6.5588 < 8.5265] w=0.2763 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)E50.CB) [> 3.7246 = 6.2077 < 8.0701] w=0.2714 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)L95.CB) [> 4.1361 = 6.8934 < 8.9614] w=0.2695 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)V68.CB) [> 3.3961 = 5.6601 < 7.3581] w=0.2676 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)L36.CB) [> 3.9362 = 6.5603 < 8.5283] w=0.2643 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)K48.CB) [> 4.2975 = 7.1624 < 9.3112] w=0.2610 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)T35.CB) [> 4.2072 = 7.0120 < 9.1155] w=0.2594 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)S82.CB) [> 3.2291 = 5.3819 < 6.9965] w=0.2545 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)S82.CB) [> 4.5469 = 7.5782 < 9.8516] w=0.2491 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)D40.CB) [> 4.1879 = 6.9799 < 9.0738] w=0.2484 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)L69.CB) [> 4.5320 = 7.5534 < 9.8194] w=0.2445 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)R73.CB) [> 3.5742 = 5.9570 < 7.7441] w=0.2445 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)R73.CB) [> 3.5749 = 5.9581 < 7.7455] w=0.2445 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)L83.CB) [> 2.9957 = 4.9928 < 6.4906] w=0.2404 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)L95.CB) [> 3.4609 = 5.7681 < 7.4986] w=0.2377 to align # Constraint # added constraint: constraint((T0343)L69.CB, (T0343)L80.CB) [> 3.2303 = 5.3839 < 6.9990] w=0.2343 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)I72.CB) [> 3.9292 = 6.5487 < 8.5133] w=0.2320 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)A65.CB) [> 3.4253 = 5.7088 < 7.4215] w=0.2320 to align # Constraint # added constraint: constraint((T0343)Y39.CB, (T0343)L69.CB) [> 3.7252 = 6.2087 < 8.0714] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)I66.CB) [> 2.7439 = 4.5731 < 5.9450] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)L69.CB) [> 4.5163 = 7.5273 < 9.7854] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)V81.CB) [> 4.0938 = 6.8231 < 8.8700] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)Y58.CB) [> 4.0551 = 6.7584 < 8.7860] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V62.CB) [> 2.8428 = 4.7380 < 6.1595] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)L83.CB) [> 3.7636 = 6.2728 < 8.1546] w=0.2320 to align # Constraint # added constraint: constraint((T0343)E63.CB, (T0343)L80.CB) [> 3.8360 = 6.3934 < 8.3114] w=0.2320 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L80.CB) [> 3.3827 = 5.6378 < 7.3292] w=0.2320 to align # Constraint # added constraint: constraint((T0343)E67.CB, (T0343)V78.CB) [> 3.1410 = 5.2350 < 6.8056] w=0.2284 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)L80.CB) [> 4.2541 = 7.0902 < 9.2172] w=0.2179 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A37.CB) [> 3.1188 = 5.1980 < 6.7574] w=0.2135 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)Y47.CB) [> 3.6113 = 6.0188 < 7.8244] w=0.2105 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)I38.CB) [> 3.7768 = 6.2947 < 8.1831] w=0.2095 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)P34.CB) [> 3.5998 = 5.9996 < 7.7995] w=0.2094 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)V78.CB) [> 3.0305 = 5.0509 < 6.5661] w=0.2038 to align # Constraint # added constraint: constraint((T0343)E17.CB, (T0343)K42.CB) [> 3.3326 = 5.5544 < 7.2207] w=0.2015 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L95.CB) [> 3.6730 = 6.1216 < 7.9581] w=0.1986 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)Y39.CB) [> 4.2897 = 7.1495 < 9.2943] w=0.1977 to align # Constraint # added constraint: constraint((T0343)E45.CB, (T0343)L80.CB) [> 4.5222 = 7.5370 < 9.7982] w=0.1954 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)V81.CB) [> 2.9656 = 4.9426 < 6.4254] w=0.1954 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V81.CB) [> 4.1626 = 6.9377 < 9.0190] w=0.1954 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A65.CB) [> 3.9106 = 6.5176 < 8.4729] w=0.1942 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)I72.CB) [> 3.8301 = 6.3835 < 8.2985] w=0.1936 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)R71.CB) [> 4.1995 = 6.9991 < 9.0988] w=0.1919 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V68.CB) [> 3.5721 = 5.9535 < 7.7396] w=0.1903 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)I72.CB) [> 4.0001 = 6.6668 < 8.6669] w=0.1895 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)A65.CB) [> 3.2155 = 5.3591 < 6.9669] w=0.1861 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)M92.CB) [> 3.8695 = 6.4492 < 8.3839] w=0.1857 to align # Constraint # added constraint: constraint((T0343)L69.CB, (T0343)L99.CB) [> 3.7095 = 6.1825 < 8.0372] w=0.1814 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)Y58.CB) [> 2.3073 = 3.8454 < 4.9991] w=0.1795 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A65.CB) [> 3.8010 = 6.3351 < 8.2356] w=0.1783 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)K79.CB) [> 3.8134 = 6.3557 < 8.2624] w=0.1780 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)Y47.CB) [> 3.9816 = 6.6360 < 8.6267] w=0.1775 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)L36.CB) [> 3.8732 = 6.4554 < 8.3920] w=0.1769 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)I72.CB) [> 3.7674 = 6.2790 < 8.1627] w=0.1757 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)A87.CB) [> 3.5521 = 5.9201 < 7.6961] w=0.1716 to align # Constraint # added constraint: constraint((T0343)R59.CB, (T0343)P88.CB) [> 3.6537 = 6.0894 < 7.9162] w=0.1716 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)Y58.CB) [> 4.4589 = 7.4315 < 9.6610] w=0.1712 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)Y58.CB) [> 3.4636 = 5.7727 < 7.5045] w=0.1712 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)Y58.CB) [> 4.5504 = 7.5840 < 9.8592] w=0.1712 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V62.CB) [> 3.3347 = 5.5578 < 7.2251] w=0.1712 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)R59.CB) [> 3.8696 = 6.4494 < 8.3842] w=0.1712 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)I38.CB) [> 4.3167 = 7.1945 < 9.3529] w=0.1709 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)V62.CB) [> 2.9455 = 4.9092 < 6.3819] w=0.1646 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L69.CB) [> 4.5800 = 7.6333 < 9.9233] w=0.1646 to align # Constraint # added constraint: constraint((T0343)S82.CB, (T0343)L95.CB) [> 4.0867 = 6.8112 < 8.8545] w=0.1635 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)K79.CB) [> 3.2564 = 5.4273 < 7.0555] w=0.1622 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)I72.CB) [> 4.2388 = 7.0646 < 9.1840] w=0.1614 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A61.CB) [> 3.2023 = 5.3371 < 6.9383] w=0.1529 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)Y58.CB) [> 2.9905 = 4.9842 < 6.4794] w=0.1529 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)I72.CB) [> 4.5047 = 7.5078 < 9.7601] w=0.1520 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)A52.CB) [> 3.8840 = 6.4733 < 8.4153] w=0.1497 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)V78.CB) [> 4.0155 = 6.6925 < 8.7002] w=0.1497 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)V81.CB) [> 3.3466 = 5.5777 < 7.2510] w=0.1469 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)A37.CB) [> 3.5604 = 5.9341 < 7.7143] w=0.1469 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)A87.CB) [> 3.4527 = 5.7545 < 7.4808] w=0.1458 to align # Constraint # added constraint: constraint((T0343)A52.CB, (T0343)V62.CB) [> 2.6790 = 4.4650 < 5.8044] w=0.1446 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)A65.CB) [> 3.6965 = 6.1608 < 8.0091] w=0.1441 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)A52.CB) [> 4.2971 = 7.1619 < 9.3104] w=0.1428 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)A52.CB) [> 3.8113 = 6.3522 < 8.2579] w=0.1345 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)Y58.CB) [> 3.6472 = 6.0786 < 7.9022] w=0.1321 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)N77.CB) [> 4.2927 = 7.1545 < 9.3008] w=0.1281 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)K48.CB) [> 4.7040 = 7.8400 < 10.1920] w=0.1245 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)K79.CB) [> 4.3027 = 7.1712 < 9.3226] w=0.1239 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A52.CB) [> 3.8846 = 6.4744 < 8.4167] w=0.1239 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)A52.CB) [> 3.7717 = 6.2861 < 8.1719] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)E51.CB) [> 4.0227 = 6.7044 < 8.7158] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)A52.CB) [> 3.6276 = 6.0460 < 7.8598] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)W64.CB) [> 3.4056 = 5.6760 < 7.3787] w=0.1239 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)V62.CB) [> 4.5491 = 7.5818 < 9.8563] w=0.1210 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)A98.CB) [> 4.3852 = 7.3087 < 9.5013] w=0.1181 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)I72.CB) [> 4.7434 = 7.9057 < 10.2774] w=0.1163 to align # Constraint # added constraint: constraint((T0343)L80.CB, (T0343)L99.CB) [> 4.2502 = 7.0837 < 9.2088] w=0.1153 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)K90.CB) [> 3.7666 = 6.2778 < 8.1611] w=0.1145 to align # Constraint # added constraint: constraint((T0343)E30.CB, (T0343)Y58.CB) [> 4.4861 = 7.4769 < 9.7200] w=0.1133 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)E21.CB) [> 3.0768 = 5.1280 < 6.6664] w=0.1077 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L99.CB) [> 3.3758 = 5.6263 < 7.3142] w=0.1074 to align # Constraint # added constraint: constraint((T0343)G11.CA, (T0343)V20.CB) [> 3.6897 = 6.1495 < 7.9943] w=0.1053 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V55.CB) [> 4.2544 = 7.0907 < 9.2179] w=0.1020 to align # Constraint # added constraint: constraint((T0343)G11.CA, (T0343)E21.CB) [> 4.4087 = 7.3479 < 9.5523] w=0.0997 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)S82.CB) [> 4.3049 = 7.1748 < 9.3272] w=0.0995 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)Y39.CB) [> 4.1689 = 6.9482 < 9.0326] w=0.0972 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)A52.CB) [> 3.4718 = 5.7863 < 7.5222] w=0.0972 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)A61.CB) [> 2.6768 = 4.4613 < 5.7996] w=0.0957 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)Y58.CB) [> 2.8501 = 4.7501 < 6.1751] w=0.0957 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)V62.CB) [> 4.3957 = 7.3262 < 9.5240] w=0.0957 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)D84.CB) [> 4.0761 = 6.7936 < 8.8317] w=0.0951 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)V81.CB) [> 4.3383 = 7.2306 < 9.3998] w=0.0951 to align # Constraint # added constraint: constraint((T0343)E67.CB, (T0343)L83.CB) [> 3.4648 = 5.7747 < 7.5071] w=0.0938 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)Y58.CB) [> 4.4634 = 7.4390 < 9.6707] w=0.0885 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)G85.CA) [> 3.6771 = 6.1285 < 7.9671] w=0.0833 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)S82.CB) [> 2.9969 = 4.9948 < 6.4932] w=0.0826 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)S82.CB) [> 3.9669 = 6.6115 < 8.5950] w=0.0826 to align # Constraint # added constraint: constraint((T0343)E10.CB, (T0343)R94.CB) [> 2.7101 = 4.5168 < 5.8718] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)A98.CB) [> 3.3944 = 5.6573 < 7.3545] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)L95.CB) [> 3.9200 = 6.5334 < 8.4934] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)V91.CB) [> 4.5056 = 7.5094 < 9.7622] w=0.0797 to align # Constraint # added constraint: constraint((T0343)I6.CB, (T0343)A98.CB) [> 2.3460 = 3.9100 < 5.0830] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)K90.CB) [> 3.6347 = 6.0579 < 7.8752] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)V91.CB) [> 2.4517 = 4.0862 < 5.3121] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)L95.CB) [> 4.6629 = 7.7714 < 10.1029] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)R71.CB) [> 4.5896 = 7.6494 < 9.9442] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)V91.CB) [> 4.6484 = 7.7473 < 10.0715] w=0.0797 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)N57.CB) [> 3.2143 = 5.3573 < 6.9644] w=0.0774 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)N57.CB) [> 3.5466 = 5.9111 < 7.6844] w=0.0774 to align # Constraint # added constraint: constraint((T0343)I6.CB, (T0343)L15.CB) [> 3.4089 = 5.6815 < 7.3860] w=0.0774 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)L15.CB) [> 3.9783 = 6.6305 < 8.6196] w=0.0774 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)I72.CB) [> 3.3991 = 5.6652 < 7.3647] w=0.0765 to align # Constraint # added constraint: constraint((T0343)R4.CB, (T0343)V20.CB) [> 4.2867 = 7.1446 < 9.2880] w=0.0740 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)W64.CB) [> 3.6520 = 6.0866 < 7.9126] w=0.0740 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)V62.CB) [> 4.7307 = 7.8845 < 10.2498] w=0.0704 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)L99.CB) [> 2.8369 = 4.7282 < 6.1467] w=0.0661 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)S96.CB) [> 3.3741 = 5.6235 < 7.3106] w=0.0661 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)L36.CB) [> 3.9088 = 6.5147 < 8.4691] w=0.0636 to align # Constraint # added constraint: constraint((T0343)G75.CA, (T0343)M92.CB) [> 4.1628 = 6.9379 < 9.0193] w=0.0617 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)V49.CB) [> 4.4354 = 7.3923 < 9.6100] w=0.0601 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)L83.CB) [> 2.8272 = 4.7120 < 6.1256] w=0.0587 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)A52.CB) [> 3.7232 = 6.2054 < 8.0670] w=0.0547 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)V81.CB) [> 3.7825 = 6.3042 < 8.1954] w=0.0541 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)V68.CB) [> 3.7958 = 6.3263 < 8.2241] w=0.0518 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L83.CB) [> 4.7185 = 7.8642 < 10.2234] w=0.0518 to align # Constraint # added constraint: constraint((T0343)Y39.CB, (T0343)L83.CB) [> 3.9341 = 6.5569 < 8.5240] w=0.0518 to align # Constraint # added constraint: constraint((T0343)P31.CB, (T0343)A52.CB) [> 4.0493 = 6.7488 < 8.7734] w=0.0501 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)V68.CB) [> 3.2394 = 5.3991 < 7.0188] w=0.0491 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A52.CB) [> 3.3926 = 5.6543 < 7.3506] w=0.0458 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)L83.CB) [> 3.4919 = 5.8198 < 7.5658] w=0.0455 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A52.CB) [> 3.9863 = 6.6438 < 8.6370] w=0.0455 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)K48.CB) [> 3.4383 = 5.7304 < 7.4496] w=0.0418 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)Y58.CB) [> 3.3104 = 5.5174 < 7.1726] w=0.0418 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)V81.CB) [> 3.6445 = 6.0741 < 7.8963] w=0.0416 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)V81.CB) [> 3.2376 = 5.3961 < 7.0149] w=0.0416 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)V91.CB) [> 3.0589 = 5.0982 < 6.6277] w=0.0416 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)M92.CB) [> 4.5998 = 7.6663 < 9.9661] w=0.0416 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)M92.CB) [> 3.8485 = 6.4141 < 8.3383] w=0.0416 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)I32.CB) [> 2.4792 = 4.1320 < 5.3716] w=0.0416 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)N77.CB) [> 4.3686 = 7.2811 < 9.4654] w=0.0416 to align # Constraint # added constraint: constraint((T0343)G43.CA, (T0343)S96.CB) [> 4.3481 = 7.2468 < 9.4208] w=0.0416 to align # Constraint # added constraint: constraint((T0343)E30.CB, (T0343)P89.CB) [> 4.1427 = 6.9045 < 8.9759] w=0.0416 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)V68.CB) [> 3.5750 = 5.9583 < 7.7458] w=0.0388 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)R71.CB) [> 4.7960 = 7.9933 < 10.3913] w=0.0388 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)I72.CB) [> 3.6460 = 6.0767 < 7.8998] w=0.0388 to align # Constraint # added constraint: constraint((T0343)Y58.CB, (T0343)I72.CB) [> 3.6514 = 6.0856 < 7.9113] w=0.0383 to align # Constraint # added constraint: constraint((T0343)Y58.CB, (T0343)M92.CB) [> 2.3702 = 3.9503 < 5.1354] w=0.0383 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)I72.CB) [> 4.4296 = 7.3826 < 9.5974] w=0.0259 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)V81.CB) [> 4.3558 = 7.2597 < 9.4377] w=0.0258 to align # Constraint # added constraint: constraint((T0343)V68.CB, (T0343)L102.CB) [> 4.6815 = 7.8024 < 10.1432] w=0.0247 to align # Constraint # added constraint: constraint((T0343)E70.CB, (T0343)L102.CB) [> 2.9952 = 4.9920 < 6.4896] w=0.0247 to align # Constraint # added constraint: constraint((T0343)E76.CB, (T0343)L102.CB) [> 4.6628 = 7.7714 < 10.1028] w=0.0247 to align # Constraint # added constraint: constraint((T0343)L80.CB, (T0343)L102.CB) [> 4.7762 = 7.9603 < 10.3484] w=0.0247 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)Y58.CB) [> 2.7693 = 4.6155 < 6.0001] w=0.0235 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)Y58.CB) [> 4.0157 = 6.6928 < 8.7006] w=0.0221 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)T35.CB) [> 3.2793 = 5.4655 < 7.1052] w=0.0192 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)Y58.CB) [> 3.6047 = 6.0078 < 7.8101] w=0.0189 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)L83.CB) [> 3.9187 = 6.5312 < 8.4906] w=0.0125 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)K48.CB) [> 3.6074 = 6.0124 < 7.8161] w=0.0117 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/decoys/ # ReadConformPDB reading from PDB file ../dimer/decoys/ps-1.pdb.gz looking for chain 'A' model 1 # choosing archetypes in rotamer library # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-1 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-2 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-3 # ReadConformPDB reading from PDB file ../dimer/decoys/zpzw.pdb.gz looking for chain 'A' model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation dimer//zpzw # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 Skipped atom 117, because occupancy 1 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0343)Y24.CA and (T0343)C27.CA only 0.000 apart, marking (T0343)C27.CA as missing WARNING: atoms too close: (T0343)I25.CA and (T0343)P28.CA only 0.000 apart, marking (T0343)P28.CA as missing WARNING: atoms too close: (T0343)D26.CA and (T0343)C29.CA only 0.000 apart, marking (T0343)C29.CA as missing WARNING: atoms too close: (T0343)E60.CA and (T0343)W64.CA only 0.000 apart, marking (T0343)W64.CA as missing WARNING: atoms too close: (T0343)A61.CA and (T0343)A65.CA only 0.000 apart, marking (T0343)A65.CA as missing WARNING: atoms too close: (T0343)V62.CA and (T0343)I66.CA only 0.000 apart, marking (T0343)I66.CA as missing # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 256 model score 0.7079 model score 0.7079 model score 0.7079 model score 1.2685 model score 1.8626 model score 2.1060 model score 2.0982 model score 2.1088 model score 1.8580 model score 1.5428 model score 1.5556 model score 1.6183 model score 1.6197 model score 1.6254 model score 1.6965 model score 1.9690 model score 1.5629 model score 1.5743 model score 1.5925 model score 1.5925 model score 1.4874 model score 1.4687 model score 0.8289 model score 0.8289 model score 0.6737 model score 0.7584 model score 0.5902 model score 1.4123 model score 1.8735 model score 0.9618 model score 1.9988 model score 1.1418 model score 1.1471 model score 1.3284 model score 2.2250 model score 2.2481 model score 1.7365 model score 1.8219 model score 1.7593 model score 1.9706 model score 1.2930 model score 2.2812 model score 1.3512 model score 1.4875 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2250 model score 1.7382 model score 1.4048 model score 2.1921 model score 1.8104 model score 1.4134 model score 2.2481 model score 2.0818 model score 2.2279 model score 1.7365 model score 1.5925 model score 1.3752 model score 1.4874 model score 1.8253 model score 1.5925 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0992 model score 2.1569 model score 2.3753 model score 1.8300 model score 2.2761 model score 1.2819 model score 1.6080 model score 0.8927 model score 1.9962 model score 1.5338 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2279 model score 2.1248 model score 2.0818 model score 1.1794 model score 1.3927 model score 1.9400 model score 1.0513 model score 1.5388 model score 1.1220 model score 2.1557 model score 1.2056 model score 1.5294 model score 1.4165 model score 1.1034 model score 1.1034 model score 1.6844 model score 1.2249 model score 1.4012 model score 1.5233 model score 1.2994 model score 1.4799 model score 0.5194 model score 0.5788 model score 1.4710 model score 0.6539 model score 1.7093 model score 1.2771 model score 1.3859 model score 1.8742 model score 1.7158 model score 2.1546 model score 1.3318 model score 1.4252 model score 1.8641 model score 1.1759 model score 2.0586 model score 1.3855 model score 0.7649 model score 0.5477 model score 0.6941 model score 0.5502 model score 0.7256 model score 1.8870 model score 1.8786 model score 2.2491 model score 1.3486 model score 1.9942 model score 1.8250 model score 1.0685 model score 1.0697 model score 1.0645 model score 1.0677 model score 1.0638 model score 1.1644 model score 1.1449 model score 1.0677 model score 1.9555 model score 1.0774 model score 1.0871 model score 1.1230 model score 1.0606 model score 1.0842 model score 1.1460 model score 1.2835 model score 1.5441 model score 1.6496 model score 1.7259 model score 2.4634 model score 2.5299 model score 1.3378 model score 1.1409 model score 1.1230 model score 1.1445 model score 1.1373 model score 1.1414 model score 2.0320 model score 0.9845 model score 1.7547 model score 1.8490 model score 0.9762 model score 1.3975 model score 1.2894 model score 0.8568 model score 0.5589 model score 0.9524 model score 1.3604 model score 1.2713 model score 0.8131 model score 0.5059 model score 1.1445 model score 0.9518 model score 1.1460 model score 1.1038 model score 1.1373 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7636 model score 0.3098 model score 0.4273 model score 0.0846 model score 0.1418 model score 1.3536 model score 1.5146 model score 1.6015 model score 1.4119 model score 1.5347 model score 1.8981 model score 1.1612 model score 1.5670 model score 1.4903 model score 1.2012 model score 1.8870 model score 1.2546 model score 2.4557 model score 1.7215 model score 1.8335 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1272 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5896 model score 0.4647 model score 0.9357 model score 0.5563 model score 0.7280 model score 1.4958 model score 1.5501 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6087 model score 1.5220 model score 1.3947 model score 0.7561 model score 1.0016 model score 1.4755 model score 1.5828 model score 1.5086 model score 1.0714 model score 1.0597 model score 1.1783 model score 1.1869 model score 1.1692 model score 2.0958 model score 1.4654 model score 1.4902 model score 1.9756 model score 1.6149 model score 1.5374 model score 1.5823 model score 1.2292 model score 1.4936 weight: 0.7706 eval: 0.7079 min: 0.0846 max: 2.5299 weight: 0.7706 eval: 0.7079 min: 0.0846 max: 2.5299 weight: 0.7706 eval: 0.7079 min: 0.0846 max: 2.5299 weight: 0.5643 eval: 1.2685 min: 0.0846 max: 2.5299 weight: 0.3456 eval: 1.8626 min: 0.0846 max: 2.5299 weight: 0.2560 eval: 2.1060 min: 0.0846 max: 2.5299 weight: 0.2589 eval: 2.0982 min: 0.0846 max: 2.5299 weight: 0.2550 eval: 2.1088 min: 0.0846 max: 2.5299 weight: 0.3473 eval: 1.8580 min: 0.0846 max: 2.5299 weight: 0.4633 eval: 1.5428 min: 0.0846 max: 2.5299 weight: 0.4586 eval: 1.5556 min: 0.0846 max: 2.5299 weight: 0.4355 eval: 1.6183 min: 0.0846 max: 2.5299 weight: 0.4350 eval: 1.6197 min: 0.0846 max: 2.5299 weight: 0.4329 eval: 1.6254 min: 0.0846 max: 2.5299 weight: 0.4068 eval: 1.6965 min: 0.0846 max: 2.5299 weight: 0.3065 eval: 1.9690 min: 0.0846 max: 2.5299 weight: 0.4559 eval: 1.5629 min: 0.0846 max: 2.5299 weight: 0.4517 eval: 1.5743 min: 0.0846 max: 2.5299 weight: 0.4450 eval: 1.5925 min: 0.0846 max: 2.5299 weight: 0.4450 eval: 1.5925 min: 0.0846 max: 2.5299 weight: 0.4837 eval: 1.4874 min: 0.0846 max: 2.5299 weight: 0.4906 eval: 1.4687 min: 0.0846 max: 2.5299 weight: 0.7261 eval: 0.8289 min: 0.0846 max: 2.5299 weight: 0.7261 eval: 0.8289 min: 0.0846 max: 2.5299 weight: 0.7832 eval: 0.6737 min: 0.0846 max: 2.5299 weight: 0.7520 eval: 0.7584 min: 0.0846 max: 2.5299 weight: 0.8139 eval: 0.5902 min: 0.0846 max: 2.5299 weight: 0.5113 eval: 1.4123 min: 0.0846 max: 2.5299 weight: 0.3416 eval: 1.8735 min: 0.0846 max: 2.5299 weight: 0.6772 eval: 0.9618 min: 0.0846 max: 2.5299 weight: 0.2955 eval: 1.9988 min: 0.0846 max: 2.5299 weight: 0.6109 eval: 1.1418 min: 0.0846 max: 2.5299 weight: 0.6090 eval: 1.1471 min: 0.0846 max: 2.5299 weight: 0.5422 eval: 1.3284 min: 0.0846 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2.5299 weight: 0.7632 eval: 0.7280 min: 0.0846 max: 2.5299 weight: 0.4806 eval: 1.4958 min: 0.0846 max: 2.5299 weight: 0.4606 eval: 1.5501 min: 0.0846 max: 2.5299 weight: 0.5611 eval: 1.2771 min: 0.0846 max: 2.5299 weight: 0.5611 eval: 1.2771 min: 0.0846 max: 2.5299 weight: 0.5611 eval: 1.2771 min: 0.0846 max: 2.5299 weight: 0.5611 eval: 1.2771 min: 0.0846 max: 2.5299 weight: 0.5611 eval: 1.2771 min: 0.0846 max: 2.5299 weight: 0.4391 eval: 1.6087 min: 0.0846 max: 2.5299 weight: 0.4710 eval: 1.5220 min: 0.0846 max: 2.5299 weight: 0.5178 eval: 1.3947 min: 0.0846 max: 2.5299 weight: 0.7529 eval: 0.7561 min: 0.0846 max: 2.5299 weight: 0.6625 eval: 1.0016 min: 0.0846 max: 2.5299 weight: 0.4881 eval: 1.4755 min: 0.0846 max: 2.5299 weight: 0.4486 eval: 1.5828 min: 0.0846 max: 2.5299 weight: 0.4759 eval: 1.5086 min: 0.0846 max: 2.5299 weight: 0.6368 eval: 1.0714 min: 0.0846 max: 2.5299 weight: 0.6411 eval: 1.0597 min: 0.0846 max: 2.5299 weight: 0.5975 eval: 1.1783 min: 0.0846 max: 2.5299 weight: 0.5943 eval: 1.1869 min: 0.0846 max: 2.5299 weight: 0.6008 eval: 1.1692 min: 0.0846 max: 2.5299 weight: 0.2598 eval: 2.0958 min: 0.0846 max: 2.5299 weight: 0.4918 eval: 1.4654 min: 0.0846 max: 2.5299 weight: 0.4827 eval: 1.4902 min: 0.0846 max: 2.5299 weight: 0.3040 eval: 1.9756 min: 0.0846 max: 2.5299 weight: 0.4368 eval: 1.6149 min: 0.0846 max: 2.5299 weight: 0.4653 eval: 1.5374 min: 0.0846 max: 2.5299 weight: 0.4488 eval: 1.5823 min: 0.0846 max: 2.5299 weight: 0.5787 eval: 1.2292 min: 0.0846 max: 2.5299 weight: 0.4814 eval: 1.4936 min: 0.0846 max: 2.5299 Adding 4103 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -176.3929, CN propb: -176.3929 weights: 0.3320 constraints: 235 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 235 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 235 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 3868 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 3868 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4103 # command: