# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0299/ # command:# Making conformation for sequence T0299 numbered 1 through 180 Created new target T0299 from T0299.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0299/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0299//projects/compbio/experiments/protein-predict/casp7/T0299/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0299//projects/compbio/experiments/protein-predict/casp7/T0299/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0299/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0299/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)L103.CB) [> 3.7289 = 6.2148 < 8.0792] w=1.0000 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)Y39.CB) [> 3.6221 = 6.0367 < 7.8478] w=0.9115 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)F102.CB) [> 4.0207 = 6.7011 < 8.7115] w=0.9044 to align # Constraint # added constraint: constraint((T0299)R25.CB, (T0299)S38.CB) [> 3.5915 = 5.9858 < 7.7815] w=0.8667 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)F102.CB) [> 3.4728 = 5.7881 < 7.5245] w=0.8380 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)L103.CB) [> 3.4401 = 5.7334 < 7.4535] w=0.8350 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)F102.CB) [> 3.6451 = 6.0751 < 7.8976] w=0.8333 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)E37.CB) [> 4.1594 = 6.9324 < 9.0120] w=0.8194 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)Y39.CB) [> 3.9463 = 6.5772 < 8.5503] w=0.8071 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)D101.CB) [> 3.8635 = 6.4391 < 8.3709] w=0.7958 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)S38.CB) [> 3.7935 = 6.3224 < 8.2191] w=0.7777 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)F104.CB) [> 3.9806 = 6.6343 < 8.6246] w=0.7649 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)L103.CB) [> 3.8605 = 6.4342 < 8.3645] w=0.7087 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)Q72.CB) [> 3.6844 = 6.1406 < 7.9828] w=0.7061 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)S73.CB) [> 3.6719 = 6.1199 < 7.9558] w=0.6936 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)Y105.CB) [> 3.7683 = 6.2805 < 8.1647] w=0.6847 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)L103.CB) [> 4.1121 = 6.8535 < 8.9095] w=0.6769 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)F104.CB) [> 3.9114 = 6.5189 < 8.4746] w=0.6607 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)D101.CB) [> 3.4662 = 5.7769 < 7.5100] w=0.6324 to align # Constraint # added constraint: constraint((T0299)V57.CB, (T0299)E85.CB) [> 3.6501 = 6.0835 < 7.9086] w=0.6193 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)D101.CB) [> 3.6966 = 6.1610 < 8.0094] w=0.6122 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)T106.CB) [> 3.5050 = 5.8416 < 7.5941] w=0.6063 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)F102.CB) [> 3.8999 = 6.4999 < 8.4498] w=0.6061 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)I40.CB) [> 3.5468 = 5.9114 < 7.6848] w=0.6042 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)T106.CB) [> 3.8187 = 6.3645 < 8.2739] w=0.5946 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)L24.CB) [> 3.8833 = 6.4722 < 8.4139] w=0.5930 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)Q72.CB) [> 3.7587 = 6.2646 < 8.1440] w=0.5925 to align # Constraint # added constraint: constraint((T0299)F64.CB, (T0299)F74.CB) [> 3.7949 = 6.3249 < 8.2224] w=0.5924 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)Y105.CB) [> 3.9129 = 6.5215 < 8.4779] w=0.5908 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)L76.CB) [> 3.3373 = 5.5623 < 7.2309] w=0.5801 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)F74.CB) [> 4.2925 = 7.1541 < 9.3003] w=0.5764 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)E37.CB) [> 3.2880 = 5.4800 < 7.1240] w=0.5746 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)D101.CB) [> 4.1061 = 6.8435 < 8.8965] w=0.5706 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)N41.CB) [> 3.7859 = 6.3098 < 8.2027] w=0.5651 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)E107.CB) [> 3.3102 = 5.5170 < 7.1721] w=0.5648 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)S73.CB) [> 3.7459 = 6.2431 < 8.1160] w=0.5630 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)F74.CB) [> 3.6897 = 6.1495 < 7.9944] w=0.5623 to align # Constraint # added constraint: constraint((T0299)L60.CB, (T0299)F74.CB) [> 3.7449 = 6.2415 < 8.1140] w=0.5618 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)K100.CB) [> 3.4352 = 5.7253 < 7.4429] w=0.5574 to align # Constraint # added constraint: constraint((T0299)V57.CB, (T0299)F74.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.5508 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)E107.CB) [> 3.9806 = 6.6344 < 8.6247] w=0.5482 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)L77.CB) [> 4.0363 = 6.7271 < 8.7452] w=0.5456 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)I40.CB) [> 4.1915 = 6.9858 < 9.0816] w=0.5407 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)S73.CB) [> 4.5063 = 7.5104 < 9.7636] w=0.5337 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)L77.CB) [> 3.2733 = 5.4554 < 7.0921] w=0.5279 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)K100.CB) [> 3.9612 = 6.6020 < 8.5826] w=0.5247 to align # Constraint # added constraint: constraint((T0299)L28.CB, (T0299)S38.CB) [> 3.2584 = 5.4306 < 7.0598] w=0.5185 to align # Constraint # added constraint: constraint((T0299)K53.CB, (T0299)E85.CB) [> 3.5555 = 5.9258 < 7.7036] w=0.5169 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)F102.CB) [> 4.0973 = 6.8288 < 8.8775] w=0.5161 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)V36.CB) [> 3.4883 = 5.8138 < 7.5580] w=0.5155 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)M21.CB) [> 3.2906 = 5.4843 < 7.1295] w=0.5113 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L28.CB) [> 3.8350 = 6.3917 < 8.3091] w=0.5113 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)Y105.CB) [> 3.5257 = 5.8762 < 7.6391] w=0.5075 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)L97.CB) [> 3.1412 = 5.2353 < 6.8059] w=0.5018 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)Y39.CB) [> 3.7449 = 6.2415 < 8.1139] w=0.4964 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)S38.CB) [> 3.4852 = 5.8087 < 7.5512] w=0.4964 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)I40.CB) [> 3.8923 = 6.4872 < 8.4334] w=0.4865 to align # Constraint # added constraint: constraint((T0299)L56.CB, (T0299)E85.CB) [> 3.5275 = 5.8792 < 7.6429] w=0.4827 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)F74.CB) [> 3.9863 = 6.6438 < 8.6369] w=0.4822 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)F74.CB) [> 3.1792 = 5.2986 < 6.8882] w=0.4723 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)S75.CB) [> 4.1670 = 6.9449 < 9.0284] w=0.4723 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)L76.CB) [> 4.3039 = 7.1732 < 9.3252] w=0.4723 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)V114.CB) [> 3.4983 = 5.8305 < 7.5796] w=0.4699 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)I40.CB) [> 3.9859 = 6.6432 < 8.6362] w=0.4680 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)Y105.CB) [> 4.0815 = 6.8025 < 8.8433] w=0.4661 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)F104.CB) [> 3.8126 = 6.3543 < 8.2606] w=0.4645 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)R25.CB) [> 3.9193 = 6.5321 < 8.4917] w=0.4590 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)Q72.CB) [> 3.5046 = 5.8411 < 7.5934] w=0.4589 to align # Constraint # added constraint: constraint((T0299)F82.CB, (T0299)L121.CB) [> 3.8551 = 6.4251 < 8.3527] w=0.4571 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L33.CB) [> 3.5648 = 5.9413 < 7.7237] w=0.4533 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)D101.CB) [> 3.2172 = 5.3620 < 6.9707] w=0.4498 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)F74.CB) [> 3.7777 = 6.2962 < 8.1851] w=0.4470 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)A98.CB) [> 4.3988 = 7.3314 < 9.5308] w=0.4465 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)L103.CB) [> 3.8686 = 6.4477 < 8.3820] w=0.4449 to align # Constraint # added constraint: constraint((T0299)T48.CB, (T0299)L77.CB) [> 3.7909 = 6.3182 < 8.2136] w=0.4448 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)L76.CB) [> 3.3371 = 5.5619 < 7.2304] w=0.4424 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)Q72.CB) [> 3.6729 = 6.1215 < 7.9579] w=0.4390 to align # Constraint # added constraint: constraint((T0299)L97.CB, (T0299)L121.CB) [> 3.4970 = 5.8284 < 7.5769] w=0.4384 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)I71.CB) [> 3.1560 = 5.2601 < 6.8381] w=0.4358 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)F104.CB) [> 3.5389 = 5.8981 < 7.6676] w=0.4337 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)V36.CB) [> 4.1157 = 6.8594 < 8.9173] w=0.4309 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)E37.CB) [> 3.1166 = 5.1944 < 6.7527] w=0.4309 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)F74.CB) [> 3.7181 = 6.1968 < 8.0558] w=0.4264 to align # Constraint # added constraint: constraint((T0299)E83.CB, (T0299)L121.CB) [> 3.6688 = 6.1146 < 7.9490] w=0.4250 to align # Constraint # added constraint: constraint((T0299)T29.CB, (T0299)S38.CB) [> 3.9883 = 6.6472 < 8.6413] w=0.4247 to align # Constraint # added constraint: constraint((T0299)F82.CB, (T0299)F102.CB) [> 3.6310 = 6.0516 < 7.8671] w=0.4242 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)V118.CB) [> 3.2566 = 5.4277 < 7.0560] w=0.4240 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)F74.CB) [> 3.7490 = 6.2483 < 8.1227] w=0.4226 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)L77.CB) [> 3.7437 = 6.2395 < 8.1114] w=0.4201 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)N41.CB) [> 3.6543 = 6.0905 < 7.9176] w=0.4199 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)S75.CB) [> 3.5747 = 5.9579 < 7.7453] w=0.4196 to align # Constraint # added constraint: constraint((T0299)R25.CB, (T0299)V36.CB) [> 3.0931 = 5.1552 < 6.7018] w=0.4180 to align # Constraint # added constraint: constraint((T0299)M21.CB, (T0299)S38.CB) [> 3.3582 = 5.5971 < 7.2762] w=0.4180 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)N41.CB) [> 3.4985 = 5.8309 < 7.5802] w=0.4165 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)I135.CB) [> 4.3449 = 7.2415 < 9.4139] w=0.4149 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)F104.CB) [> 3.4294 = 5.7157 < 7.4304] w=0.4142 to align # Constraint # added constraint: constraint((T0299)L60.CB, (T0299)E85.CB) [> 3.8446 = 6.4077 < 8.3300] w=0.4120 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)L76.CB) [> 3.9373 = 6.5622 < 8.5309] w=0.4119 to align # Constraint # added constraint: constraint((T0299)V127.CB, (T0299)F136.CB) [> 3.3029 = 5.5048 < 7.1562] w=0.4104 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)L103.CB) [> 3.7138 = 6.1896 < 8.0465] w=0.4095 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)S75.CB) [> 4.3038 = 7.1731 < 9.3250] w=0.4088 to align # Constraint # added constraint: constraint((T0299)F82.CB, (T0299)Y105.CB) [> 3.6087 = 6.0145 < 7.8189] w=0.4061 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)L77.CB) [> 3.6695 = 6.1158 < 7.9505] w=0.4010 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)T106.CB) [> 3.2909 = 5.4848 < 7.1303] w=0.4006 to align # Constraint # added constraint: constraint((T0299)F64.CB, (T0299)L76.CB) [> 3.5628 = 5.9380 < 7.7194] w=0.3991 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)S75.CB) [> 3.5001 = 5.8336 < 7.5837] w=0.3929 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)M21.CB) [> 3.5752 = 5.9587 < 7.7463] w=0.3913 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)F64.CB) [> 4.6001 = 7.6669 < 9.9669] w=0.3912 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)E37.CB) [> 3.9399 = 6.5665 < 8.5364] w=0.3906 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)V36.CB) [> 3.7449 = 6.2415 < 8.1140] w=0.3906 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)L76.CB) [> 3.3651 = 5.6085 < 7.2911] w=0.3894 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)T117.CB) [> 3.3921 = 5.6535 < 7.3495] w=0.3883 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)L103.CB) [> 3.2002 = 5.3337 < 6.9338] w=0.3867 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)S38.CB) [> 3.9167 = 6.5279 < 8.4863] w=0.3819 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)F136.CB) [> 4.2551 = 7.0919 < 9.2194] w=0.3803 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)G134.CA) [> 3.9584 = 6.5973 < 8.5765] w=0.3788 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)F104.CB) [> 3.4775 = 5.7958 < 7.5346] w=0.3748 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)S73.CB) [> 3.3167 = 5.5279 < 7.1862] w=0.3686 to align # Constraint # added constraint: constraint((T0299)E126.CB, (T0299)W137.CB) [> 3.6021 = 6.0035 < 7.8046] w=0.3681 to align # Constraint # added constraint: constraint((T0299)L24.CB, (T0299)S38.CB) [> 4.0426 = 6.7377 < 8.7591] w=0.3673 to align # Constraint # added constraint: constraint((T0299)E83.CB, (T0299)T117.CB) [> 3.4044 = 5.6740 < 7.3762] w=0.3664 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)V118.CB) [> 4.1429 = 6.9048 < 8.9763] w=0.3658 to align # Constraint # added constraint: constraint((T0299)F47.CB, (T0299)L56.CB) [> 3.6148 = 6.0246 < 7.8320] w=0.3645 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)Y105.CB) [> 4.0169 = 6.6948 < 8.7033] w=0.3644 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)I135.CB) [> 3.0910 = 5.1516 < 6.6971] w=0.3642 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)S75.CB) [> 3.5713 = 5.9522 < 7.7379] w=0.3622 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)F102.CB) [> 4.0652 = 6.7754 < 8.8080] w=0.3618 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)K100.CB) [> 3.8437 = 6.4061 < 8.3279] w=0.3615 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)I71.CB) [> 4.3849 = 7.3082 < 9.5007] w=0.3607 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)Y39.CB) [> 3.5781 = 5.9636 < 7.7526] w=0.3607 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)E107.CB) [> 3.9154 = 6.5257 < 8.4834] w=0.3603 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)I135.CB) [> 4.0683 = 6.7805 < 8.8147] w=0.3569 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)G134.CA) [> 3.3841 = 5.6402 < 7.3323] w=0.3542 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)L103.CB) [> 4.2962 = 7.1604 < 9.3085] w=0.3540 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)L76.CB) [> 4.0884 = 6.8140 < 8.8583] w=0.3534 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)N41.CB) [> 3.8972 = 6.4953 < 8.4438] w=0.3510 to align # Constraint # added constraint: constraint((T0299)F64.CB, (T0299)S73.CB) [> 4.1350 = 6.8917 < 8.9591] w=0.3509 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)F47.CB) [> 4.2374 = 7.0623 < 9.1810] w=0.3500 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)S78.CB) [> 4.4337 = 7.3894 < 9.6062] w=0.3488 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)L56.CB) [> 3.7855 = 6.3092 < 8.2019] w=0.3458 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)L56.CB) [> 3.9013 = 6.5022 < 8.4528] w=0.3455 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)K59.CB) [> 3.4795 = 5.7991 < 7.5389] w=0.3455 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)L60.CB) [> 3.5059 = 5.8432 < 7.5961] w=0.3455 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)S75.CB) [> 4.2688 = 7.1147 < 9.2492] w=0.3454 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)V127.CB) [> 3.6766 = 6.1277 < 7.9661] w=0.3424 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)S75.CB) [> 3.2794 = 5.4656 < 7.1053] w=0.3423 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)W137.CB) [> 3.9932 = 6.6554 < 8.6520] w=0.3396 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)K100.CB) [> 4.2573 = 7.0956 < 9.2242] w=0.3386 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)K100.CB) [> 3.6758 = 6.1263 < 7.9641] w=0.3376 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)S38.CB) [> 4.1631 = 6.9384 < 9.0200] w=0.3362 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)Q72.CB) [> 3.1716 = 5.2860 < 6.8718] w=0.3345 to align # Constraint # added constraint: constraint((T0299)E126.CB, (T0299)F136.CB) [> 3.4966 = 5.8276 < 7.5759] w=0.3326 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)W137.CB) [> 4.2822 = 7.1370 < 9.2781] w=0.3321 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)F140.CB) [> 2.9390 = 4.8984 < 6.3679] w=0.3319 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)F63.CB) [> 3.2344 = 5.3906 < 7.0078] w=0.3299 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)L97.CB) [> 4.2371 = 7.0618 < 9.1804] w=0.3289 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)T106.CB) [> 4.0326 = 6.7210 < 8.7373] w=0.3282 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)I71.CB) [> 4.1998 = 6.9996 < 9.0995] w=0.3280 to align # Constraint # added constraint: constraint((T0299)F82.CB, (T0299)T106.CB) [> 4.1039 = 6.8398 < 8.8918] w=0.3278 to align # Constraint # added constraint: constraint((T0299)M21.CB, (T0299)I40.CB) [> 3.6509 = 6.0848 < 7.9102] w=0.3256 to align # Constraint # added constraint: constraint((T0299)L60.CB, (T0299)Q72.CB) [> 3.8985 = 6.4974 < 8.4467] w=0.3240 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)S75.CB) [> 4.4171 = 7.3619 < 9.5704] w=0.3239 to align # Constraint # added constraint: constraint((T0299)T48.CB, (T0299)S78.CB) [> 3.5713 = 5.9522 < 7.7378] w=0.3224 to align # Constraint # added constraint: constraint((T0299)F64.CB, (T0299)R99.CB) [> 3.9507 = 6.5845 < 8.5599] w=0.3223 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)Y105.CB) [> 3.5187 = 5.8645 < 7.6239] w=0.3217 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)R99.CB) [> 3.2997 = 5.4995 < 7.1493] w=0.3192 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)L77.CB) [> 3.6883 = 6.1471 < 7.9913] w=0.3176 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)V118.CB) [> 4.2470 = 7.0783 < 9.2018] w=0.3152 to align # Constraint # added constraint: constraint((T0299)F47.CB, (T0299)S75.CB) [> 3.5391 = 5.8985 < 7.6680] w=0.3152 to align # Constraint # added constraint: constraint((T0299)L24.CB, (T0299)V36.CB) [> 3.9476 = 6.5794 < 8.5532] w=0.3124 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)Y39.CB) [> 4.0510 = 6.7517 < 8.7772] w=0.3110 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)N41.CB) [> 4.4107 = 7.3512 < 9.5565] w=0.3109 to align # Constraint # added constraint: constraint((T0299)V57.CB, (T0299)L89.CB) [> 3.2690 = 5.4484 < 7.0829] w=0.3103 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)S73.CB) [> 3.6910 = 6.1517 < 7.9972] w=0.3103 to align # Constraint # added constraint: constraint((T0299)L24.CB, (T0299)L76.CB) [> 3.8930 = 6.4883 < 8.4348] w=0.3089 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)L121.CB) [> 4.0414 = 6.7357 < 8.7564] w=0.3066 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)G43.CA) [> 3.0765 = 5.1275 < 6.6658] w=0.3052 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)F74.CB) [> 3.9085 = 6.5142 < 8.4684] w=0.3039 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)I135.CB) [> 3.9214 = 6.5357 < 8.4964] w=0.3032 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)G134.CA) [> 3.7645 = 6.2741 < 8.1564] w=0.3032 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)L76.CB) [> 3.7023 = 6.1705 < 8.0216] w=0.3024 to align # Constraint # added constraint: constraint((T0299)M21.CB, (T0299)E37.CB) [> 4.1672 = 6.9453 < 9.0289] w=0.2997 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)L28.CB) [> 4.0807 = 6.8011 < 8.8414] w=0.2974 to align # Constraint # added constraint: constraint((T0299)E126.CB, (T0299)G138.CA) [> 3.2827 = 5.4712 < 7.1125] w=0.2953 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)Y39.CB) [> 3.9530 = 6.5884 < 8.5649] w=0.2952 to align # Constraint # added constraint: constraint((T0299)I115.CB, (T0299)F140.CB) [> 3.1407 = 5.2346 < 6.8049] w=0.2949 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)G43.CA) [> 3.8112 = 6.3520 < 8.2577] w=0.2937 to align # Constraint # added constraint: constraint((T0299)L60.CB, (T0299)S75.CB) [> 3.6029 = 6.0048 < 7.8063] w=0.2908 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)D101.CB) [> 4.5135 = 7.5225 < 9.7792] w=0.2905 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)Q72.CB) [> 3.6252 = 6.0419 < 7.8545] w=0.2887 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)L121.CB) [> 3.4156 = 5.6927 < 7.4005] w=0.2876 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)V36.CB) [> 3.7294 = 6.2156 < 8.0803] w=0.2868 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)F136.CB) [> 3.5811 = 5.9684 < 7.7590] w=0.2857 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)F130.CB) [> 4.1445 = 6.9075 < 8.9798] w=0.2848 to align # Constraint # added constraint: constraint((T0299)F47.CB, (T0299)L77.CB) [> 3.0440 = 5.0733 < 6.5953] w=0.2848 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)L24.CB) [> 4.2044 = 7.0074 < 9.1096] w=0.2839 to align # Constraint # added constraint: constraint((T0299)L28.CB, (T0299)S42.CB) [> 3.6892 = 6.1486 < 7.9932] w=0.2829 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)Y105.CB) [> 3.8849 = 6.4748 < 8.4173] w=0.2816 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)G108.CA) [> 3.5307 = 5.8844 < 7.6498] w=0.2814 to align # Constraint # added constraint: constraint((T0299)L86.CB, (T0299)K100.CB) [> 3.6457 = 6.0761 < 7.8990] w=0.2812 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)T106.CB) [> 3.8326 = 6.3877 < 8.3040] w=0.2801 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)Y145.CB) [> 3.6197 = 6.0328 < 7.8426] w=0.2787 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)V127.CB) [> 3.7825 = 6.3041 < 8.1954] w=0.2773 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)G134.CA) [> 3.7682 = 6.2804 < 8.1645] w=0.2773 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)G134.CA) [> 3.8588 = 6.4313 < 8.3607] w=0.2768 to align # Constraint # added constraint: constraint((T0299)M21.CB, (T0299)L76.CB) [> 2.8812 = 4.8019 < 6.2425] w=0.2737 to align # Constraint # added constraint: constraint((T0299)N12.CB, (T0299)G43.CA) [> 3.6972 = 6.1620 < 8.0106] w=0.2723 to align # Constraint # added constraint: constraint((T0299)E27.CB, (T0299)K147.CB) [> 2.8231 = 4.7052 < 6.1168] w=0.2721 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)S38.CB) [> 4.6368 = 7.7280 < 10.0464] w=0.2707 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)I45.CB) [> 3.9367 = 6.5612 < 8.5296] w=0.2691 to align # Constraint # added constraint: constraint((T0299)V127.CB, (T0299)G138.CA) [> 3.8563 = 6.4271 < 8.3552] w=0.2687 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)L77.CB) [> 3.8841 = 6.4735 < 8.4155] w=0.2687 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)V118.CB) [> 4.2768 = 7.1280 < 9.2664] w=0.2658 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)T106.CB) [> 3.9697 = 6.6162 < 8.6010] w=0.2656 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)Q72.CB) [> 3.5287 = 5.8812 < 7.6455] w=0.2656 to align # Constraint # added constraint: constraint((T0299)F64.CB, (T0299)L89.CB) [> 3.7259 = 6.2098 < 8.0728] w=0.2652 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)F46.CB) [> 3.6423 = 6.0706 < 7.8917] w=0.2620 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)Y150.CB) [> 3.8847 = 6.4745 < 8.4169] w=0.2610 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)L60.CB) [> 3.7872 = 6.3121 < 8.2057] w=0.2580 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)L77.CB) [> 3.5738 = 5.9563 < 7.7432] w=0.2566 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)L89.CB) [> 4.0022 = 6.6703 < 8.6714] w=0.2559 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)F140.CB) [> 3.2271 = 5.3785 < 6.9920] w=0.2535 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)V114.CB) [> 3.3461 = 5.5769 < 7.2500] w=0.2531 to align # Constraint # added constraint: constraint((T0299)I71.CB, (T0299)D101.CB) [> 4.1335 = 6.8892 < 8.9559] w=0.2500 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)M21.CB) [> 3.0842 = 5.1403 < 6.6824] w=0.2496 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)F104.CB) [> 4.4737 = 7.4561 < 9.6930] w=0.2495 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)F104.CB) [> 3.5831 = 5.9718 < 7.7634] w=0.2495 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)I71.CB) [> 4.5302 = 7.5503 < 9.8154] w=0.2490 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)Y105.CB) [> 3.6638 = 6.1063 < 7.9381] w=0.2483 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)N44.CB) [> 3.6458 = 6.0764 < 7.8993] w=0.2464 to align # Constraint # added constraint: constraint((T0299)F82.CB, (T0299)D101.CB) [> 4.2383 = 7.0638 < 9.1830] w=0.2433 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)F47.CB) [> 4.2107 = 7.0179 < 9.1232] w=0.2422 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)S42.CB) [> 4.2315 = 7.0524 < 9.1681] w=0.2417 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)F130.CB) [> 4.2124 = 7.0206 < 9.1268] w=0.2409 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)F104.CB) [> 4.0674 = 6.7790 < 8.8126] w=0.2399 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)S78.CB) [> 4.0695 = 6.7825 < 8.8173] w=0.2399 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)F63.CB) [> 3.9566 = 6.5944 < 8.5727] w=0.2399 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)S75.CB) [> 3.2675 = 5.4459 < 7.0796] w=0.2393 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)S73.CB) [> 4.4344 = 7.3906 < 9.6078] w=0.2373 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)T117.CB) [> 4.2691 = 7.1152 < 9.2498] w=0.2373 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)L128.CB) [> 3.6944 = 6.1573 < 8.0045] w=0.2361 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)S75.CB) [> 4.7545 = 7.9241 < 10.3014] w=0.2357 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)S73.CB) [> 4.4197 = 7.3661 < 9.5759] w=0.2354 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)S141.CB) [> 4.3838 = 7.3063 < 9.4981] w=0.2353 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)I40.CB) [> 3.4499 = 5.7499 < 7.4749] w=0.2353 to align # Constraint # added constraint: constraint((T0299)K139.CB, (T0299)Y153.CB) [> 3.7902 = 6.3169 < 8.2120] w=0.2350 to align # Constraint # added constraint: constraint((T0299)V111.CB, (T0299)E142.CB) [> 3.4679 = 5.7798 < 7.5138] w=0.2333 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)F102.CB) [> 4.1055 = 6.8425 < 8.8952] w=0.2324 to align # Constraint # added constraint: constraint((T0299)L33.CB, (T0299)L154.CB) [> 4.2822 = 7.1370 < 9.2781] w=0.2321 to align # Constraint # added constraint: constraint((T0299)L31.CB, (T0299)H151.CB) [> 3.4437 = 5.7396 < 7.4614] w=0.2321 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)E122.CB) [> 3.9028 = 6.5047 < 8.4561] w=0.2320 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)S42.CB) [> 4.0644 = 6.7739 < 8.8061] w=0.2312 to align # Constraint # added constraint: constraint((T0299)K16.CB, (T0299)N41.CB) [> 3.8304 = 6.3840 < 8.2991] w=0.2306 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)L56.CB) [> 4.1245 = 6.8741 < 8.9363] w=0.2301 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)Y105.CB) [> 3.3847 = 5.6412 < 7.3336] w=0.2300 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)F104.CB) [> 4.1710 = 6.9517 < 9.0373] w=0.2300 to align # Constraint # added constraint: constraint((T0299)N12.CB, (T0299)L76.CB) [> 4.1583 = 6.9306 < 9.0098] w=0.2291 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)G138.CA) [> 3.8397 = 6.3995 < 8.3193] w=0.2289 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)W137.CB) [> 2.3535 = 3.9225 < 5.0993] w=0.2289 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)F136.CB) [> 4.3122 = 7.1869 < 9.3430] w=0.2289 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)S42.CB) [> 3.4112 = 5.6854 < 7.3910] w=0.2284 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)D51.CB) [> 4.1064 = 6.8440 < 8.8973] w=0.2277 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)F46.CB) [> 3.7811 = 6.3019 < 8.1924] w=0.2277 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)Q55.CB) [> 2.8166 = 4.6943 < 6.1025] w=0.2256 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)S73.CB) [> 3.2658 = 5.4431 < 7.0760] w=0.2244 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)G138.CA) [> 3.9141 = 6.5236 < 8.4807] w=0.2227 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)G43.CA) [> 4.0448 = 6.7413 < 8.7636] w=0.2221 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)G43.CA) [> 3.8056 = 6.3427 < 8.2455] w=0.2193 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)L76.CB) [> 2.9400 = 4.9000 < 6.3701] w=0.2192 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)N44.CB) [> 3.5586 = 5.9310 < 7.7103] w=0.2184 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)G138.CA) [> 4.0681 = 6.7801 < 8.8142] w=0.2179 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)L109.CB) [> 3.2874 = 5.4790 < 7.1227] w=0.2171 to align # Constraint # added constraint: constraint((T0299)T48.CB, (T0299)F82.CB) [> 4.5077 = 7.5128 < 9.7667] w=0.2170 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)G138.CA) [> 3.5306 = 5.8843 < 7.6495] w=0.2154 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)G138.CA) [> 3.7199 = 6.1998 < 8.0597] w=0.2154 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)I45.CB) [> 3.6551 = 6.0919 < 7.9195] w=0.2153 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)W93.CB) [> 4.3293 = 7.2156 < 9.3802] w=0.2153 to align # Constraint # added constraint: constraint((T0299)L28.CB, (T0299)F63.CB) [> 3.3939 = 5.6566 < 7.3536] w=0.2136 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)L89.CB) [> 3.9788 = 6.6314 < 8.6208] w=0.2136 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)L121.CB) [> 3.2291 = 5.3819 < 6.9965] w=0.2135 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)S141.CB) [> 2.7551 = 4.5918 < 5.9693] w=0.2135 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)S141.CB) [> 4.2860 = 7.1433 < 9.2863] w=0.2135 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)S141.CB) [> 4.1069 = 6.8448 < 8.8983] w=0.2135 to align # Constraint # added constraint: constraint((T0299)F136.CB, (T0299)F171.CB) [> 4.1583 = 6.9304 < 9.0096] w=0.2128 to align # Constraint # added constraint: constraint((T0299)N12.CB, (T0299)E23.CB) [> 2.6370 = 4.3951 < 5.7136] w=0.2122 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)N44.CB) [> 4.0764 = 6.7941 < 8.8323] w=0.2122 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)Y129.CB) [> 4.3293 = 7.2155 < 9.3802] w=0.2102 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)Y129.CB) [> 2.8884 = 4.8140 < 6.2582] w=0.2102 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)Y105.CB) [> 3.7083 = 6.1805 < 8.0347] w=0.2075 to align # Constraint # added constraint: constraint((T0299)E80.CB, (T0299)V114.CB) [> 4.4397 = 7.3995 < 9.6193] w=0.2061 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)L128.CB) [> 3.7566 = 6.2610 < 8.1393] w=0.2051 to align # Constraint # added constraint: constraint((T0299)I115.CB, (T0299)Y150.CB) [> 4.1008 = 6.8346 < 8.8850] w=0.2051 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)F74.CB) [> 3.9224 = 6.5373 < 8.4985] w=0.2037 to align # Constraint # added constraint: constraint((T0299)S42.CB, (T0299)F104.CB) [> 3.7914 = 6.3189 < 8.2146] w=0.2023 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)S75.CB) [> 4.4493 = 7.4154 < 9.6401] w=0.2022 to align # Constraint # added constraint: constraint((T0299)I115.CB, (T0299)L154.CB) [> 4.7551 = 7.9252 < 10.3028] w=0.2003 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)L121.CB) [> 3.4588 = 5.7647 < 7.4941] w=0.1999 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)L77.CB) [> 3.5480 = 5.9132 < 7.6872] w=0.1999 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)L128.CB) [> 4.0934 = 6.8224 < 8.8691] w=0.1996 to align # Constraint # added constraint: constraint((T0299)L28.CB, (T0299)F74.CB) [> 3.9491 = 6.5819 < 8.5564] w=0.1992 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)L33.CB) [> 4.4310 = 7.3851 < 9.6006] w=0.1982 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)L121.CB) [> 4.1137 = 6.8562 < 8.9131] w=0.1966 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)V118.CB) [> 3.5753 = 5.9589 < 7.7466] w=0.1954 to align # Constraint # added constraint: constraint((T0299)L79.CB, (T0299)L121.CB) [> 3.4379 = 5.7298 < 7.4488] w=0.1942 to align # Constraint # added constraint: constraint((T0299)V20.CB, (T0299)S38.CB) [> 4.4112 = 7.3520 < 9.5576] w=0.1925 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)S38.CB) [> 4.4728 = 7.4547 < 9.6911] w=0.1925 to align # Constraint # added constraint: constraint((T0299)W137.CB, (T0299)Y150.CB) [> 4.4949 = 7.4915 < 9.7389] w=0.1924 to align # Constraint # added constraint: constraint((T0299)I71.CB, (T0299)T106.CB) [> 3.2921 = 5.4868 < 7.1328] w=0.1911 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)L103.CB) [> 4.3891 = 7.3152 < 9.5098] w=0.1911 to align # Constraint # added constraint: constraint((T0299)G14.CA, (T0299)N44.CB) [> 4.1394 = 6.8991 < 8.9688] w=0.1909 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)L76.CB) [> 3.7216 = 6.2027 < 8.0635] w=0.1907 to align # Constraint # added constraint: constraint((T0299)K16.CB, (T0299)G43.CA) [> 4.0687 = 6.7811 < 8.8154] w=0.1906 to align # Constraint # added constraint: constraint((T0299)G15.CA, (T0299)G43.CA) [> 4.2063 = 7.0105 < 9.1136] w=0.1906 to align # Constraint # added constraint: constraint((T0299)G14.CA, (T0299)G43.CA) [> 3.0050 = 5.0083 < 6.5108] w=0.1906 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)L103.CB) [> 4.4937 = 7.4896 < 9.7364] w=0.1904 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)F136.CB) [> 4.2887 = 7.1479 < 9.2922] w=0.1901 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)L128.CB) [> 4.0881 = 6.8135 < 8.8576] w=0.1894 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)F46.CB) [> 2.8059 = 4.6765 < 6.0795] w=0.1892 to align # Constraint # added constraint: constraint((T0299)G15.CA, (T0299)N41.CB) [> 4.1486 = 6.9144 < 8.9887] w=0.1891 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)L128.CB) [> 3.4881 = 5.8134 < 7.5575] w=0.1890 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)F136.CB) [> 3.9902 = 6.6504 < 8.6455] w=0.1878 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)I45.CB) [> 2.7738 = 4.6230 < 6.0099] w=0.1877 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)L133.CB) [> 3.6813 = 6.1355 < 7.9762] w=0.1867 to align # Constraint # added constraint: constraint((T0299)M21.CB, (T0299)F46.CB) [> 3.2874 = 5.4790 < 7.1227] w=0.1857 to align # Constraint # added constraint: constraint((T0299)K139.CB, (T0299)Y150.CB) [> 3.9445 = 6.5742 < 8.5465] w=0.1835 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)G43.CA) [> 4.1231 = 6.8718 < 8.9334] w=0.1821 to align # Constraint # added constraint: constraint((T0299)V36.CB, (T0299)T48.CB) [> 3.6390 = 6.0649 < 7.8844] w=0.1802 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)L133.CB) [> 4.5211 = 7.5351 < 9.7956] w=0.1794 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)F70.CB) [> 3.7969 = 6.3282 < 8.2266] w=0.1790 to align # Constraint # added constraint: constraint((T0299)E119.CB, (T0299)G138.CA) [> 4.0532 = 6.7553 < 8.7819] w=0.1790 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)W93.CB) [> 3.7300 = 6.2167 < 8.0817] w=0.1771 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)W93.CB) [> 3.9413 = 6.5688 < 8.5394] w=0.1771 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)F136.CB) [> 3.7865 = 6.3108 < 8.2040] w=0.1732 to align # Constraint # added constraint: constraint((T0299)T48.CB, (T0299)L76.CB) [> 4.0166 = 6.6943 < 8.7026] w=0.1725 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)L76.CB) [> 4.0329 = 6.7214 < 8.7379] w=0.1724 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)W137.CB) [> 3.0496 = 5.0827 < 6.6076] w=0.1717 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)E122.CB) [> 3.8256 = 6.3761 < 8.2889] w=0.1715 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)N44.CB) [> 2.9447 = 4.9078 < 6.3802] w=0.1699 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)F102.CB) [> 4.3103 = 7.1838 < 9.3390] w=0.1696 to align # Constraint # added constraint: constraint((T0299)F136.CB, (T0299)T148.CB) [> 3.9279 = 6.5466 < 8.5106] w=0.1695 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)I135.CB) [> 4.0004 = 6.6673 < 8.6675] w=0.1694 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)I135.CB) [> 4.6188 = 7.6980 < 10.0074] w=0.1676 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)L121.CB) [> 4.5727 = 7.6211 < 9.9075] w=0.1669 to align # Constraint # added constraint: constraint((T0299)F136.CB, (T0299)L155.CB) [> 4.4906 = 7.4843 < 9.7295] w=0.1660 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)W137.CB) [> 3.5445 = 5.9075 < 7.6797] w=0.1660 to align # Constraint # added constraint: constraint((T0299)Y4.CB, (T0299)K35.CB) [> 3.6117 = 6.0195 < 7.8253] w=0.1632 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)K100.CB) [> 2.9047 = 4.8411 < 6.2934] w=0.1629 to align # Constraint # added constraint: constraint((T0299)S49.CB, (T0299)S78.CB) [> 3.5251 = 5.8751 < 7.6377] w=0.1618 to align # Constraint # added constraint: constraint((T0299)E27.CB, (T0299)H151.CB) [> 3.8070 = 6.3449 < 8.2484] w=0.1617 to align # Constraint # added constraint: constraint((T0299)G15.CA, (T0299)S78.CB) [> 4.4492 = 7.4153 < 9.6399] w=0.1616 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)S38.CB) [> 3.6890 = 6.1483 < 7.9928] w=0.1616 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)L121.CB) [> 3.2820 = 5.4700 < 7.1110] w=0.1611 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)L77.CB) [> 3.9014 = 6.5023 < 8.4531] w=0.1601 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)G131.CA) [> 4.0101 = 6.6835 < 8.6885] w=0.1572 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)V111.CB) [> 3.3400 = 5.5667 < 7.2367] w=0.1571 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)T106.CB) [> 4.6337 = 7.7229 < 10.0398] w=0.1570 to align # Constraint # added constraint: constraint((T0299)K18.CB, (T0299)N44.CB) [> 4.2433 = 7.0722 < 9.1939] w=0.1566 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)F130.CB) [> 3.7984 = 6.3307 < 8.2299] w=0.1565 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)Y150.CB) [> 4.0061 = 6.6769 < 8.6799] w=0.1561 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)V118.CB) [> 3.7687 = 6.2812 < 8.1656] w=0.1552 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)Y105.CB) [> 2.8911 = 4.8186 < 6.2642] w=0.1546 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)L128.CB) [> 4.4020 = 7.3367 < 9.5378] w=0.1535 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)F74.CB) [> 3.4198 = 5.6997 < 7.4096] w=0.1531 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)Q72.CB) [> 3.8600 = 6.4333 < 8.3632] w=0.1531 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)Y105.CB) [> 4.4439 = 7.4065 < 9.6285] w=0.1506 to align # Constraint # added constraint: constraint((T0299)L109.CB, (T0299)L133.CB) [> 4.1791 = 6.9651 < 9.0547] w=0.1499 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)L133.CB) [> 3.8516 = 6.4193 < 8.3451] w=0.1499 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)F70.CB) [> 4.0108 = 6.6846 < 8.6900] w=0.1493 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)F70.CB) [> 2.9508 = 4.9180 < 6.3934] w=0.1493 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)Y145.CB) [> 4.4869 = 7.4781 < 9.7215] w=0.1485 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)S141.CB) [> 3.4810 = 5.8016 < 7.5421] w=0.1481 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)V118.CB) [> 3.5749 = 5.9582 < 7.7457] w=0.1479 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)K139.CB) [> 4.4786 = 7.4643 < 9.7036] w=0.1475 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)K139.CB) [> 3.5521 = 5.9202 < 7.6963] w=0.1475 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)V20.CB) [> 2.7806 = 4.6344 < 6.0247] w=0.1457 to align # Constraint # added constraint: constraint((T0299)L33.CB, (T0299)F47.CB) [> 3.5485 = 5.9142 < 7.6884] w=0.1453 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)F102.CB) [> 4.2882 = 7.1471 < 9.2912] w=0.1430 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)K132.CB) [> 2.6715 = 4.4526 < 5.7883] w=0.1430 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)V118.CB) [> 4.0459 = 6.7432 < 8.7661] w=0.1422 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)S78.CB) [> 4.1015 = 6.8359 < 8.8867] w=0.1385 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)E122.CB) [> 3.7498 = 6.2496 < 8.1245] w=0.1355 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)F136.CB) [> 3.7526 = 6.2544 < 8.1307] w=0.1310 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)L109.CB) [> 3.7369 = 6.2282 < 8.0966] w=0.1306 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)I135.CB) [> 3.1704 = 5.2841 < 6.8693] w=0.1291 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)N167.CB) [> 4.2891 = 7.1484 < 9.2930] w=0.1288 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)R166.CB) [> 4.1878 = 6.9797 < 9.0736] w=0.1288 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)S75.CB) [> 2.7786 = 4.6310 < 6.0203] w=0.1284 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)K132.CB) [> 4.2187 = 7.0312 < 9.1405] w=0.1275 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)K139.CB) [> 3.9534 = 6.5889 < 8.5656] w=0.1270 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)F102.CB) [> 2.9796 = 4.9659 < 6.4557] w=0.1269 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)F102.CB) [> 4.4619 = 7.4365 < 9.6674] w=0.1269 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)S78.CB) [> 4.7682 = 7.9470 < 10.3311] w=0.1269 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)F102.CB) [> 4.2130 = 7.0217 < 9.1282] w=0.1269 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)D101.CB) [> 3.4898 = 5.8164 < 7.5613] w=0.1269 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)D101.CB) [> 3.5941 = 5.9902 < 7.7873] w=0.1269 to align # Constraint # added constraint: constraint((T0299)G32.CA, (T0299)I135.CB) [> 4.6293 = 7.7154 < 10.0301] w=0.1269 to align # Constraint # added constraint: constraint((T0299)L155.CB, (T0299)I165.CB) [> 4.2013 = 7.0022 < 9.1028] w=0.1269 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)N167.CB) [> 2.7883 = 4.6471 < 6.0412] w=0.1269 to align # Constraint # added constraint: constraint((T0299)F140.CB, (T0299)N167.CB) [> 3.8827 = 6.4712 < 8.4126] w=0.1269 to align # Constraint # added constraint: constraint((T0299)K139.CB, (T0299)I165.CB) [> 3.5019 = 5.8365 < 7.5875] w=0.1269 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)L178.CB) [> 3.4642 = 5.7737 < 7.5058] w=0.1269 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)L178.CB) [> 4.5064 = 7.5107 < 9.7639] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)L178.CB) [> 2.2158 = 3.6930 < 4.8009] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)G175.CA) [> 3.8960 = 6.4933 < 8.4413] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)I174.CB) [> 3.7683 = 6.2804 < 8.1646] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V114.CB, (T0299)L178.CB) [> 4.5358 = 7.5597 < 9.8276] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V111.CB, (T0299)M177.CB) [> 4.6337 = 7.7229 < 10.0397] w=0.1269 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)L76.CB) [> 3.5523 = 5.9205 < 7.6967] w=0.1269 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)G131.CA) [> 4.1221 = 6.8702 < 8.9312] w=0.1269 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)K132.CB) [> 3.4756 = 5.7926 < 7.5304] w=0.1269 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)K132.CB) [> 4.4836 = 7.4726 < 9.7143] w=0.1269 to align # Constraint # added constraint: constraint((T0299)V111.CB, (T0299)I174.CB) [> 3.8219 = 6.3699 < 8.2808] w=0.1269 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)V118.CB) [> 3.7853 = 6.3088 < 8.2014] w=0.1249 to align # Constraint # added constraint: constraint((T0299)F63.CB, (T0299)I163.CB) [> 3.5225 = 5.8709 < 7.6322] w=0.1249 to align # Constraint # added constraint: constraint((T0299)T148.CB, (T0299)F159.CB) [> 4.1444 = 6.9073 < 8.9795] w=0.1249 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)T170.CB) [> 4.3731 = 7.2885 < 9.4750] w=0.1246 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)L103.CB) [> 3.1255 = 5.2092 < 6.7720] w=0.1246 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)F104.CB) [> 3.8785 = 6.4642 < 8.4035] w=0.1246 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)Y68.CB) [> 3.9283 = 6.5472 < 8.5113] w=0.1233 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L178.CB) [> 4.2120 = 7.0200 < 9.1261] w=0.1233 to align # Constraint # added constraint: constraint((T0299)I11.CB, (T0299)V20.CB) [> 4.3334 = 7.2224 < 9.3891] w=0.1226 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)T106.CB) [> 4.1747 = 6.9578 < 9.0452] w=0.1226 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)Y105.CB) [> 2.8456 = 4.7427 < 6.1655] w=0.1226 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)T106.CB) [> 3.7989 = 6.3315 < 8.2309] w=0.1226 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)F104.CB) [> 4.4514 = 7.4190 < 9.6447] w=0.1226 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)L103.CB) [> 2.5433 = 4.2388 < 5.5104] w=0.1226 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)F104.CB) [> 4.4783 = 7.4638 < 9.7029] w=0.1226 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)L103.CB) [> 4.4573 = 7.4288 < 9.6574] w=0.1226 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)F130.CB) [> 3.5610 = 5.9349 < 7.7154] w=0.1211 to align # Constraint # added constraint: constraint((T0299)N12.CB, (T0299)I50.CB) [> 3.3123 = 5.5205 < 7.1766] w=0.1208 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)F74.CB) [> 4.2122 = 7.0203 < 9.1264] w=0.1202 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)S75.CB) [> 4.5711 = 7.6186 < 9.9041] w=0.1202 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)L76.CB) [> 4.0722 = 6.7870 < 8.8231] w=0.1202 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)P90.CB) [> 4.4225 = 7.3708 < 9.5821] w=0.1200 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)S78.CB) [> 2.5075 = 4.1792 < 5.4330] w=0.1199 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)H67.CB) [> 3.8060 = 6.3434 < 8.2464] w=0.1199 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)Y39.CB) [> 3.0824 = 5.1373 < 6.6785] w=0.1199 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)S75.CB) [> 4.1734 = 6.9556 < 9.0423] w=0.1199 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)L128.CB) [> 3.3816 = 5.6361 < 7.3269] w=0.1196 to align # Constraint # added constraint: constraint((T0299)R3.CB, (T0299)E37.CB) [> 4.4408 = 7.4014 < 9.6217] w=0.1192 to align # Constraint # added constraint: constraint((T0299)T48.CB, (T0299)T106.CB) [> 4.1961 = 6.9936 < 9.0917] w=0.1186 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)Y145.CB) [> 4.3454 = 7.2424 < 9.4151] w=0.1179 to align # Constraint # added constraint: constraint((T0299)K18.CB, (T0299)G43.CA) [> 2.2617 = 3.7695 < 4.9004] w=0.1166 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)N44.CB) [> 4.4048 = 7.3413 < 9.5437] w=0.1166 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)I45.CB) [> 2.9351 = 4.8919 < 6.3594] w=0.1166 to align # Constraint # added constraint: constraint((T0299)L31.CB, (T0299)F47.CB) [> 4.7371 = 7.8951 < 10.2636] w=0.1166 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)L121.CB) [> 4.7430 = 7.9049 < 10.2764] w=0.1166 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)K139.CB) [> 3.7547 = 6.2578 < 8.1351] w=0.1160 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)T106.CB) [> 3.4518 = 5.7530 < 7.4789] w=0.1153 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)G138.CA) [> 3.7391 = 6.2318 < 8.1014] w=0.1148 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)L133.CB) [> 3.4029 = 5.6716 < 7.3730] w=0.1148 to align # Constraint # added constraint: constraint((T0299)F136.CB, (T0299)Y145.CB) [> 3.6227 = 6.0378 < 7.8491] w=0.1142 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)V118.CB) [> 4.4076 = 7.3460 < 9.5498] w=0.1136 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)Y68.CB) [> 4.4843 = 7.4738 < 9.7160] w=0.1135 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)T106.CB) [> 3.9352 = 6.5587 < 8.5263] w=0.1130 to align # Constraint # added constraint: constraint((T0299)F47.CB, (T0299)L133.CB) [> 2.8863 = 4.8106 < 6.2538] w=0.1130 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)G134.CA) [> 3.7553 = 6.2589 < 8.1365] w=0.1130 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)F104.CB) [> 3.5074 = 5.8456 < 7.5993] w=0.1130 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)I135.CB) [> 3.7617 = 6.2695 < 8.1503] w=0.1130 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)T106.CB) [> 4.1460 = 6.9099 < 8.9829] w=0.1130 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)L76.CB) [> 4.7948 = 7.9913 < 10.3886] w=0.1124 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)S73.CB) [> 4.3662 = 7.2769 < 9.4600] w=0.1124 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)V118.CB) [> 3.7702 = 6.2837 < 8.1688] w=0.1124 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)F74.CB) [> 4.1733 = 6.9555 < 9.0421] w=0.1124 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)S73.CB) [> 2.9606 = 4.9343 < 6.4146] w=0.1124 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)Q72.CB) [> 2.5086 = 4.1810 < 5.4354] w=0.1124 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)Y105.CB) [> 4.3267 = 7.2112 < 9.3746] w=0.1121 to align # Constraint # added constraint: constraint((T0299)E27.CB, (T0299)H67.CB) [> 4.1810 = 6.9683 < 9.0588] w=0.1092 to align # Constraint # added constraint: constraint((T0299)L31.CB, (T0299)S49.CB) [> 4.4892 = 7.4820 < 9.7266] w=0.1092 to align # Constraint # added constraint: constraint((T0299)L31.CB, (T0299)K59.CB) [> 3.0297 = 5.0496 < 6.5644] w=0.1092 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)Q72.CB) [> 3.8554 = 6.4257 < 8.3534] w=0.1092 to align # Constraint # added constraint: constraint((T0299)V19.CB, (T0299)N41.CB) [> 4.2733 = 7.1222 < 9.2588] w=0.1092 to align # Constraint # added constraint: constraint((T0299)G14.CA, (T0299)F74.CB) [> 3.0460 = 5.0766 < 6.5996] w=0.1092 to align # Constraint # added constraint: constraint((T0299)G14.CA, (T0299)Q72.CB) [> 3.9887 = 6.6478 < 8.6421] w=0.1092 to align # Constraint # added constraint: constraint((T0299)G14.CA, (T0299)I45.CB) [> 4.4489 = 7.4149 < 9.6393] w=0.1092 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)S75.CB) [> 3.0616 = 5.1027 < 6.6335] w=0.1092 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)F74.CB) [> 3.0501 = 5.0835 < 6.6086] w=0.1092 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)S73.CB) [> 3.6242 = 6.0404 < 7.8525] w=0.1092 to align # Constraint # added constraint: constraint((T0299)I115.CB, (T0299)W137.CB) [> 4.5787 = 7.6312 < 9.9205] w=0.1092 to align # Constraint # added constraint: constraint((T0299)Y68.CB, (T0299)L77.CB) [> 4.4729 = 7.4548 < 9.6912] w=0.1092 to align # Constraint # added constraint: constraint((T0299)H67.CB, (T0299)L76.CB) [> 2.9858 = 4.9764 < 6.4693] w=0.1092 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)F46.CB) [> 3.2382 = 5.3970 < 7.0161] w=0.1092 to align # Constraint # added constraint: constraint((T0299)K35.CB, (T0299)F47.CB) [> 4.5851 = 7.6418 < 9.9344] w=0.1092 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)G32.CA) [> 4.5206 = 7.5343 < 9.7946] w=0.1078 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)F46.CB) [> 3.5208 = 5.8680 < 7.6284] w=0.1078 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)H67.CB) [> 4.0218 = 6.7030 < 8.7139] w=0.1078 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)L77.CB) [> 3.8931 = 6.4885 < 8.4350] w=0.1078 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)L103.CB) [> 4.7339 = 7.8898 < 10.2567] w=0.1078 to align # Constraint # added constraint: constraint((T0299)K53.CB, (T0299)S78.CB) [> 4.6010 = 7.6684 < 9.9689] w=0.1078 to align # Constraint # added constraint: constraint((T0299)Y68.CB, (T0299)R99.CB) [> 4.4512 = 7.4186 < 9.6442] w=0.1078 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)K18.CB) [> 4.5873 = 7.6454 < 9.9390] w=0.1057 to align # Constraint # added constraint: constraint((T0299)K18.CB, (T0299)S38.CB) [> 4.7427 = 7.9044 < 10.2758] w=0.1057 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)I40.CB) [> 4.1529 = 6.9216 < 8.9980] w=0.1044 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)G43.CA) [> 4.1418 = 6.9029 < 8.9738] w=0.1044 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)N44.CB) [> 3.3373 = 5.5623 < 7.2309] w=0.1044 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)W137.CB) [> 3.4945 = 5.8242 < 7.5714] w=0.1005 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)T148.CB) [> 4.0451 = 6.7418 < 8.7643] w=0.0994 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)G134.CA) [> 3.8652 = 6.4420 < 8.3746] w=0.0961 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)L121.CB) [> 3.9962 = 6.6603 < 8.6584] w=0.0958 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)I135.CB) [> 3.5539 = 5.9232 < 7.7001] w=0.0929 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)W137.CB) [> 4.2295 = 7.0491 < 9.1638] w=0.0914 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)W137.CB) [> 3.5224 = 5.8707 < 7.6320] w=0.0914 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)I135.CB) [> 2.9311 = 4.8851 < 6.3506] w=0.0914 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)F136.CB) [> 3.0075 = 5.0125 < 6.5162] w=0.0914 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)W137.CB) [> 4.4490 = 7.4149 < 9.6394] w=0.0914 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)F136.CB) [> 4.4491 = 7.4151 < 9.6397] w=0.0914 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)D101.CB) [> 3.4564 = 5.7607 < 7.4889] w=0.0876 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)F102.CB) [> 4.2282 = 7.0471 < 9.1612] w=0.0869 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)T170.CB) [> 4.4193 = 7.3656 < 9.5752] w=0.0859 to align # Constraint # added constraint: constraint((T0299)G134.CA, (T0299)T170.CB) [> 3.4981 = 5.8302 < 7.5793] w=0.0859 to align # Constraint # added constraint: constraint((T0299)G134.CA, (T0299)F171.CB) [> 4.4901 = 7.4835 < 9.7285] w=0.0859 to align # Constraint # added constraint: constraint((T0299)F136.CB, (T0299)I174.CB) [> 4.5528 = 7.5880 < 9.8643] w=0.0859 to align # Constraint # added constraint: constraint((T0299)F140.CB, (T0299)R166.CB) [> 4.4125 = 7.3541 < 9.5604] w=0.0846 to align # Constraint # added constraint: constraint((T0299)F140.CB, (T0299)A168.CB) [> 3.0866 = 5.1443 < 6.6876] w=0.0846 to align # Constraint # added constraint: constraint((T0299)L154.CB, (T0299)I165.CB) [> 3.1804 = 5.3007 < 6.8910] w=0.0846 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)R166.CB) [> 3.5053 = 5.8421 < 7.5948] w=0.0846 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)I165.CB) [> 2.7492 = 4.5819 < 5.9565] w=0.0846 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)T170.CB) [> 4.5042 = 7.5069 < 9.7590] w=0.0833 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)K173.CB) [> 4.6767 = 7.7945 < 10.1328] w=0.0833 to align # Constraint # added constraint: constraint((T0299)E37.CB, (T0299)I174.CB) [> 4.0988 = 6.8314 < 8.8808] w=0.0833 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)I165.CB) [> 3.1492 = 5.2487 < 6.8233] w=0.0833 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)T164.CB) [> 2.5042 = 4.1737 < 5.4258] w=0.0833 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)K132.CB) [> 2.3007 = 3.8344 < 4.9848] w=0.0833 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)G131.CA) [> 4.5199 = 7.5332 < 9.7932] w=0.0833 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)I174.CB) [> 4.4767 = 7.4612 < 9.6995] w=0.0833 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)T170.CB) [> 3.7805 = 6.3008 < 8.1910] w=0.0833 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)I165.CB) [> 4.3837 = 7.3062 < 9.4981] w=0.0833 to align # Constraint # added constraint: constraint((T0299)R3.CB, (T0299)L178.CB) [> 3.9336 = 6.5560 < 8.5228] w=0.0833 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)I165.CB) [> 3.9595 = 6.5992 < 8.5790] w=0.0833 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)T164.CB) [> 1.6780 = 2.7966 < 3.6356] w=0.0833 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)I163.CB) [> 4.1430 = 6.9050 < 8.9766] w=0.0833 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)H162.CB) [> 3.9977 = 6.6628 < 8.6617] w=0.0833 to align # Constraint # added constraint: constraint((T0299)G131.CA, (T0299)T164.CB) [> 3.0787 = 5.1312 < 6.6706] w=0.0833 to align # Constraint # added constraint: constraint((T0299)G131.CA, (T0299)I163.CB) [> 2.8073 = 4.6788 < 6.0824] w=0.0833 to align # Constraint # added constraint: constraint((T0299)G131.CA, (T0299)H162.CB) [> 3.8995 = 6.4992 < 8.4490] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F130.CB, (T0299)T164.CB) [> 4.7347 = 7.8913 < 10.2586] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F130.CB, (T0299)I163.CB) [> 4.4122 = 7.3537 < 9.5598] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F130.CB, (T0299)H162.CB) [> 2.9992 = 4.9986 < 6.4982] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F130.CB, (T0299)R161.CB) [> 4.4878 = 7.4797 < 9.7236] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F130.CB, (T0299)F159.CB) [> 2.5215 = 4.2026 < 5.4633] w=0.0833 to align # Constraint # added constraint: constraint((T0299)Y129.CB, (T0299)I163.CB) [> 4.0950 = 6.8250 < 8.8725] w=0.0833 to align # Constraint # added constraint: constraint((T0299)Y129.CB, (T0299)H162.CB) [> 4.5768 = 7.6280 < 9.9165] w=0.0833 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)G131.CA) [> 3.9753 = 6.6256 < 8.6133] w=0.0833 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)V118.CB) [> 3.4335 = 5.7225 < 7.4393] w=0.0833 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)I135.CB) [> 4.5795 = 7.6325 < 9.9223] w=0.0817 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)V118.CB) [> 4.6757 = 7.7929 < 10.1307] w=0.0817 to align # Constraint # added constraint: constraint((T0299)K139.CB, (T0299)A149.CB) [> 4.3914 = 7.3191 < 9.5148] w=0.0817 to align # Constraint # added constraint: constraint((T0299)F47.CB, (T0299)P90.CB) [> 3.7772 = 6.2953 < 8.1839] w=0.0814 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)P90.CB) [> 3.1456 = 5.2427 < 6.8155] w=0.0814 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)Y105.CB) [> 3.1704 = 5.2839 < 6.8691] w=0.0813 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L77.CB) [> 4.6694 = 7.7823 < 10.1170] w=0.0801 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)F102.CB) [> 4.1276 = 6.8793 < 8.9430] w=0.0801 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L103.CB) [> 3.4195 = 5.6992 < 7.4090] w=0.0801 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)F104.CB) [> 4.2453 = 7.0755 < 9.1982] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)L77.CB) [> 4.5595 = 7.5991 < 9.8788] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)F104.CB) [> 2.8243 = 4.7072 < 6.1193] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)V118.CB) [> 4.1901 = 6.9834 < 9.0785] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)T106.CB) [> 4.6338 = 7.7230 < 10.0399] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)Y105.CB) [> 3.2158 = 5.3597 < 6.9676] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)F104.CB) [> 4.4846 = 7.4743 < 9.7166] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)S78.CB) [> 3.8594 = 6.4324 < 8.3621] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)T106.CB) [> 4.1873 = 6.9788 < 9.0724] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)Y105.CB) [> 4.5641 = 7.6067 < 9.8888] w=0.0801 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)I135.CB) [> 4.2788 = 7.1313 < 9.2707] w=0.0801 to align # Constraint # added constraint: constraint((T0299)L6.CB, (T0299)I45.CB) [> 3.8529 = 6.4215 < 8.3480] w=0.0800 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)I45.CB) [> 4.3540 = 7.2566 < 9.4337] w=0.0800 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)L77.CB) [> 4.7023 = 7.8372 < 10.1884] w=0.0800 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)S78.CB) [> 4.1001 = 6.8336 < 8.8836] w=0.0800 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)I174.CB) [> 4.1566 = 6.9276 < 9.0059] w=0.0800 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)M177.CB) [> 4.0057 = 6.6761 < 8.6789] w=0.0800 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)K173.CB) [> 4.2320 = 7.0534 < 9.1694] w=0.0800 to align # Constraint # added constraint: constraint((T0299)L103.CB, (T0299)I174.CB) [> 4.5201 = 7.5334 < 9.7934] w=0.0800 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)T170.CB) [> 3.6756 = 6.1260 < 7.9638] w=0.0800 to align # Constraint # added constraint: constraint((T0299)Y105.CB, (T0299)K132.CB) [> 3.9428 = 6.5713 < 8.5427] w=0.0795 to align # Constraint # added constraint: constraint((T0299)H151.CB, (T0299)I163.CB) [> 4.6874 = 7.8124 < 10.1561] w=0.0784 to align # Constraint # added constraint: constraint((T0299)R3.CB, (T0299)S38.CB) [> 2.6953 = 4.4921 < 5.8398] w=0.0783 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)D101.CB) [> 2.8747 = 4.7911 < 6.2284] w=0.0781 to align # Constraint # added constraint: constraint((T0299)F70.CB, (T0299)Y105.CB) [> 2.8559 = 4.7599 < 6.1878] w=0.0781 to align # Constraint # added constraint: constraint((T0299)T148.CB, (T0299)F171.CB) [> 3.2225 = 5.3709 < 6.9822] w=0.0776 to align # Constraint # added constraint: constraint((T0299)I40.CB, (T0299)E61.CB) [> 4.2914 = 7.1524 < 9.2981] w=0.0757 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)E61.CB) [> 4.7158 = 7.8596 < 10.2175] w=0.0757 to align # Constraint # added constraint: constraint((T0299)K147.CB, (T0299)F171.CB) [> 4.1314 = 6.8857 < 8.9514] w=0.0755 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)S75.CB) [> 4.0881 = 6.8134 < 8.8575] w=0.0754 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)F136.CB) [> 4.3470 = 7.2450 < 9.4185] w=0.0753 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)L103.CB) [> 4.1687 = 6.9479 < 9.0322] w=0.0753 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)F136.CB) [> 4.6431 = 7.7385 < 10.0601] w=0.0753 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)F104.CB) [> 4.4729 = 7.4549 < 9.6914] w=0.0753 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)I135.CB) [> 3.9183 = 6.5304 < 8.4896] w=0.0735 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)V118.CB) [> 3.9377 = 6.5629 < 8.5317] w=0.0732 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)S141.CB) [> 4.7346 = 7.8910 < 10.2583] w=0.0728 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)S141.CB) [> 4.2830 = 7.1383 < 9.2798] w=0.0728 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)L76.CB) [> 4.4283 = 7.3805 < 9.5946] w=0.0723 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)L121.CB) [> 4.0090 = 6.6816 < 8.6861] w=0.0717 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)L121.CB) [> 3.6809 = 6.1348 < 7.9752] w=0.0717 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)I135.CB) [> 4.3126 = 7.1877 < 9.3440] w=0.0711 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)F136.CB) [> 3.5295 = 5.8825 < 7.6472] w=0.0711 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)I135.CB) [> 3.4631 = 5.7719 < 7.5035] w=0.0711 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)I135.CB) [> 3.8402 = 6.4004 < 8.3205] w=0.0710 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)G134.CA) [> 4.0690 = 6.7816 < 8.8161] w=0.0710 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)F74.CB) [> 4.7344 = 7.8906 < 10.2578] w=0.0704 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)S73.CB) [> 3.9724 = 6.6207 < 8.6069] w=0.0704 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)S141.CB) [> 4.5214 = 7.5356 < 9.7963] w=0.0704 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)S78.CB) [> 4.0353 = 6.7255 < 8.7432] w=0.0655 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)V19.CB) [> 4.4632 = 7.4387 < 9.6703] w=0.0635 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)F136.CB) [> 3.7657 = 6.2762 < 8.1590] w=0.0574 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)K132.CB) [> 3.8441 = 6.4068 < 8.3288] w=0.0568 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)D101.CB) [> 4.6862 = 7.8103 < 10.1534] w=0.0437 to align # Constraint # added constraint: constraint((T0299)L155.CB, (T0299)G175.CA) [> 4.2504 = 7.0840 < 9.2092] w=0.0429 to align # Constraint # added constraint: constraint((T0299)H151.CB, (T0299)G175.CA) [> 4.2586 = 7.0977 < 9.2270] w=0.0429 to align # Constraint # added constraint: constraint((T0299)G138.CA, (T0299)I165.CB) [> 4.7741 = 7.9569 < 10.3440] w=0.0423 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)A168.CB) [> 4.1073 = 6.8455 < 8.8992] w=0.0423 to align # Constraint # added constraint: constraint((T0299)S141.CB, (T0299)K169.CB) [> 3.8913 = 6.4855 < 8.4311] w=0.0423 to align # Constraint # added constraint: constraint((T0299)K152.CB, (T0299)I165.CB) [> 2.2404 = 3.7340 < 4.8541] w=0.0423 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)Y105.CB) [> 3.1032 = 5.1720 < 6.7236] w=0.0416 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)K132.CB) [> 3.9261 = 6.5435 < 8.5065] w=0.0416 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)T164.CB) [> 4.6384 = 7.7307 < 10.0499] w=0.0416 to align # Constraint # added constraint: constraint((T0299)V13.CB, (T0299)S38.CB) [> 4.0968 = 6.8281 < 8.8765] w=0.0416 to align # Constraint # added constraint: constraint((T0299)N41.CB, (T0299)I165.CB) [> 4.4759 = 7.4598 < 9.6977] w=0.0416 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)T164.CB) [> 2.7248 = 4.5414 < 5.9038] w=0.0416 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)I165.CB) [> 3.6231 = 6.0386 < 7.8501] w=0.0416 to align # Constraint # added constraint: constraint((T0299)S49.CB, (T0299)T164.CB) [> 4.6724 = 7.7873 < 10.1235] w=0.0416 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)F136.CB) [> 2.6974 = 4.4957 < 5.8443] w=0.0409 to align # Constraint # added constraint: constraint((T0299)V8.CB, (T0299)V118.CB) [> 3.9074 = 6.5123 < 8.4660] w=0.0409 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)G134.CA) [> 4.0907 = 6.8178 < 8.8632] w=0.0409 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)I135.CB) [> 3.5222 = 5.8703 < 7.6315] w=0.0409 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)F136.CB) [> 4.5503 = 7.5838 < 9.8589] w=0.0409 to align # Constraint # added constraint: constraint((T0299)R9.CB, (T0299)S141.CB) [> 3.4698 = 5.7831 < 7.5180] w=0.0409 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)G134.CA) [> 4.7710 = 7.9516 < 10.3371] w=0.0409 to align # Constraint # added constraint: constraint((T0299)R3.CB, (T0299)E34.CB) [> 4.4723 = 7.4538 < 9.6899] w=0.0409 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)I135.CB) [> 3.6053 = 6.0089 < 7.8116] w=0.0409 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)F136.CB) [> 4.1484 = 6.9139 < 8.9881] w=0.0409 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)S141.CB) [> 3.4032 = 5.6720 < 7.3736] w=0.0409 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)G134.CA) [> 2.8178 = 4.6964 < 6.1053] w=0.0407 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)Q72.CB) [> 4.4607 = 7.4345 < 9.6649] w=0.0407 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)S73.CB) [> 3.3456 = 5.5761 < 7.2489] w=0.0407 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)F74.CB) [> 4.3440 = 7.2401 < 9.4121] w=0.0407 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)S73.CB) [> 4.6285 = 7.7141 < 10.0284] w=0.0407 to align # Constraint # added constraint: constraint((T0299)G134.CA, (T0299)M177.CB) [> 4.4953 = 7.4921 < 9.7398] w=0.0407 to align # Constraint # added constraint: constraint((T0299)L155.CB, (T0299)M177.CB) [> 3.2302 = 5.3837 < 6.9988] w=0.0407 to align # Constraint # added constraint: constraint((T0299)V157.CB, (T0299)K173.CB) [> 3.9968 = 6.6613 < 8.6597] w=0.0407 to align # Constraint # added constraint: constraint((T0299)V118.CB, (T0299)I163.CB) [> 4.6355 = 7.7259 < 10.0436] w=0.0407 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L121.CB) [> 4.5958 = 7.6597 < 9.9577] w=0.0401 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)E122.CB) [> 4.3539 = 7.2565 < 9.4335] w=0.0401 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)L121.CB) [> 4.6722 = 7.7870 < 10.1231] w=0.0401 to align # Constraint # added constraint: constraint((T0299)H151.CB, (T0299)N167.CB) [> 4.4166 = 7.3610 < 9.5693] w=0.0400 to align # Constraint # added constraint: constraint((T0299)F104.CB, (T0299)E122.CB) [> 3.7100 = 6.1834 < 8.0384] w=0.0400 to align # Constraint # added constraint: constraint((T0299)T106.CB, (T0299)E122.CB) [> 4.3389 = 7.2314 < 9.4009] w=0.0400 to align # Constraint # added constraint: constraint((T0299)G10.CA, (T0299)F74.CB) [> 4.2755 = 7.1259 < 9.2636] w=0.0400 to align # Constraint # added constraint: constraint((T0299)A149.CB, (T0299)D172.CB) [> 3.6210 = 6.0350 < 7.8455] w=0.0400 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)P90.CB) [> 4.3806 = 7.3010 < 9.4913] w=0.0389 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)G134.CA) [> 4.7499 = 7.9166 < 10.2916] w=0.0377 to align # Constraint # added constraint: constraint((T0299)G43.CA, (T0299)I135.CB) [> 4.1122 = 6.8536 < 8.9097] w=0.0377 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)T106.CB) [> 2.6088 = 4.3480 < 5.6524] w=0.0377 to align # Constraint # added constraint: constraint((T0299)N44.CB, (T0299)G134.CA) [> 4.0356 = 6.7261 < 8.7439] w=0.0377 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)G134.CA) [> 3.0192 = 5.0320 < 6.5416] w=0.0377 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)Y105.CB) [> 4.4038 = 7.3397 < 9.5416] w=0.0377 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)V118.CB) [> 4.1732 = 6.9553 < 9.0419] w=0.0377 to align # Constraint # added constraint: constraint((T0299)F46.CB, (T0299)K132.CB) [> 4.3636 = 7.2726 < 9.4544] w=0.0377 to align # Constraint # added constraint: constraint((T0299)K132.CB, (T0299)F171.CB) [> 2.9615 = 4.9359 < 6.4167] w=0.0377 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)D101.CB) [> 4.1636 = 6.9394 < 9.0212] w=0.0375 to align # Constraint # added constraint: constraint((T0299)F102.CB, (T0299)S141.CB) [> 4.4413 = 7.4021 < 9.6227] w=0.0364 to align # Constraint # added constraint: constraint((T0299)D101.CB, (T0299)S141.CB) [> 4.7186 = 7.8643 < 10.2236] w=0.0364 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)E122.CB) [> 3.9142 = 6.5237 < 8.4808] w=0.0361 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)E122.CB) [> 2.8725 = 4.7875 < 6.2237] w=0.0361 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)E122.CB) [> 3.5764 = 5.9606 < 7.7488] w=0.0361 to align # Constraint # added constraint: constraint((T0299)S73.CB, (T0299)G134.CA) [> 3.8235 = 6.3725 < 8.2842] w=0.0356 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)T106.CB) [> 4.1435 = 6.9058 < 8.9776] w=0.0356 to align # Constraint # added constraint: constraint((T0299)Q72.CB, (T0299)F136.CB) [> 4.5601 = 7.6002 < 9.8803] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L121.CB, (T0299)F136.CB) [> 4.1913 = 6.9856 < 9.0813] w=0.0356 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)K132.CB) [> 4.0077 = 6.6795 < 8.6833] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)G134.CA) [> 4.7450 = 7.9083 < 10.2808] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)F136.CB) [> 4.5305 = 7.5508 < 9.8161] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)G134.CA) [> 3.4804 = 5.8006 < 7.5408] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)L121.CB) [> 3.9783 = 6.6305 < 8.6197] w=0.0356 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)G134.CA) [> 3.5464 = 5.9107 < 7.6839] w=0.0356 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)I135.CB) [> 3.3741 = 5.6235 < 7.3105] w=0.0356 to align # Constraint # added constraint: constraint((T0299)F74.CB, (T0299)F136.CB) [> 4.5735 = 7.6225 < 9.9093] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)V118.CB) [> 3.3612 = 5.6021 < 7.2827] w=0.0356 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)I163.CB) [> 4.4359 = 7.3931 < 9.6111] w=0.0355 to align # Constraint # added constraint: constraint((T0299)L76.CB, (T0299)S141.CB) [> 4.6023 = 7.6705 < 9.9717] w=0.0355 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)L121.CB) [> 4.1875 = 6.9791 < 9.0729] w=0.0355 to align # Constraint # added constraint: constraint((T0299)E61.CB, (T0299)L121.CB) [> 4.5293 = 7.5488 < 9.8134] w=0.0355 to align # Constraint # added constraint: constraint((T0299)E87.CB, (T0299)I163.CB) [> 3.6383 = 6.0638 < 7.8830] w=0.0355 to align # Constraint # added constraint: constraint((T0299)L154.CB, (T0299)I163.CB) [> 2.3560 = 3.9266 < 5.1046] w=0.0355 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)T164.CB) [> 4.3563 = 7.2606 < 9.4387] w=0.0355 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)F136.CB) [> 3.7460 = 6.2433 < 8.1163] w=0.0355 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)F136.CB) [> 3.2933 = 5.4888 < 7.1354] w=0.0355 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)I135.CB) [> 3.3741 = 5.6235 < 7.3105] w=0.0355 to align # Constraint # added constraint: constraint((T0299)D81.CB, (T0299)A168.CB) [> 4.7402 = 7.9003 < 10.2704] w=0.0355 to align # Constraint # added constraint: constraint((T0299)A5.CB, (T0299)L76.CB) [> 4.2045 = 7.0075 < 9.1097] w=0.0352 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)S73.CB) [> 3.6250 = 6.0416 < 7.8541] w=0.0231 to align # Constraint # added constraint: constraint((T0299)L7.CB, (T0299)E61.CB) [> 4.5401 = 7.5668 < 9.8368] w=0.0231 to align # Constraint # added constraint: constraint((T0299)R3.CB, (T0299)Q72.CB) [> 4.3099 = 7.1831 < 9.3380] w=0.0231 to align # Constraint # added constraint: constraint((T0299)T2.CB, (T0299)Q72.CB) [> 3.2376 = 5.3960 < 7.0148] w=0.0231 to align # Constraint # added constraint: constraint((T0299)T2.CB, (T0299)I71.CB) [> 3.6777 = 6.1294 < 7.9683] w=0.0231 to align # Constraint # added constraint: constraint((T0299)T2.CB, (T0299)F70.CB) [> 3.6731 = 6.1218 < 7.9584] w=0.0231 to align # Constraint # added constraint: constraint((T0299)I45.CB, (T0299)T106.CB) [> 3.3911 = 5.6518 < 7.3473] w=0.0218 to align # Constraint # added constraint: constraint((T0299)E122.CB, (T0299)I135.CB) [> 4.3488 = 7.2480 < 9.4224] w=0.0218 to align # Constraint # added constraint: constraint((T0299)S38.CB, (T0299)R161.CB) [> 4.3836 = 7.3060 < 9.4978] w=0.0161 to align # Constraint # added constraint: constraint((T0299)Y39.CB, (T0299)R161.CB) [> 3.0384 = 5.0640 < 6.5832] w=0.0161 to align # Constraint # added constraint: constraint((T0299)S75.CB, (T0299)G134.CA) [> 3.9310 = 6.5516 < 8.5171] w=0.0161 to align # Constraint # added constraint: constraint((T0299)L77.CB, (T0299)R161.CB) [> 4.5325 = 7.5541 < 9.8203] w=0.0161 to align # Constraint # added constraint: constraint((T0299)S78.CB, (T0299)D101.CB) [> 3.8312 = 6.3853 < 8.3009] w=0.0161 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0299/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0299/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 55, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 55, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)K16.CA and (T0299)K16.CB only 0.000 apart, marking (T0299)K16.CB as missing WARNING: atoms too close: (T0299)K18.CA and (T0299)K18.CB only 0.000 apart, marking (T0299)K18.CB as missing WARNING: atoms too close: (T0299)N30.CA and (T0299)N30.CB only 0.000 apart, marking (T0299)N30.CB as missing WARNING: atoms too close: (T0299)K35.CA and (T0299)K35.CB only 0.000 apart, marking (T0299)K35.CB as missing WARNING: atoms too close: (T0299)I50.CA and (T0299)I50.CB only 0.000 apart, marking (T0299)I50.CB as missing WARNING: atoms too close: (T0299)Q72.CA and (T0299)Q72.CB only 0.000 apart, marking (T0299)Q72.CB as missing WARNING: atoms too close: (T0299)L79.CA and (T0299)L79.CB only 0.000 apart, marking (T0299)L79.CB as missing WARNING: atoms too close: (T0299)F82.CA and (T0299)F82.CB only 0.000 apart, marking (T0299)F82.CB as missing WARNING: atoms too close: (T0299)E85.CA and (T0299)E85.CB only 0.000 apart, marking (T0299)E85.CB as missing WARNING: atoms too close: (T0299)E87.CA and (T0299)E87.CB only 0.000 apart, marking (T0299)E87.CB as missing WARNING: atoms too close: (T0299)A91.CA and (T0299)A91.CB only 0.000 apart, marking (T0299)A91.CB as missing WARNING: atoms too close: (T0299)Y105.CA and (T0299)Y105.CB only 0.000 apart, marking (T0299)Y105.CB as missing WARNING: atoms too close: (T0299)E107.CA and (T0299)E107.CB only 0.000 apart, marking (T0299)E107.CB as missing WARNING: atoms too close: (T0299)E122.CA and (T0299)E122.CB only 0.000 apart, marking (T0299)E122.CB as missing WARNING: atoms too close: (T0299)F130.CA and (T0299)F130.CB only 0.000 apart, marking (T0299)F130.CB as missing WARNING: atoms too close: (T0299)K139.CA and (T0299)K139.CB only 0.000 apart, marking (T0299)K139.CB as missing WARNING: atoms too close: (T0299)E142.CA and (T0299)E142.CB only 0.000 apart, marking (T0299)E142.CB as missing WARNING: atoms too close: (T0299)Y150.CA and (T0299)Y150.CB only 0.000 apart, marking (T0299)Y150.CB as missing WARNING: atoms too close: (T0299)K173.CA and (T0299)K173.CB only 0.000 apart, marking (T0299)K173.CB as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)K16.CA and (T0299)K16.CB only 0.000 apart, marking (T0299)K16.CB as missing WARNING: atoms too close: (T0299)M21.CA and (T0299)M21.CB only 0.000 apart, marking (T0299)M21.CB as missing WARNING: atoms too close: (T0299)L33.CA and (T0299)L33.CB only 0.000 apart, marking (T0299)L33.CB as missing WARNING: atoms too close: (T0299)S49.CA and (T0299)S49.CB only 0.000 apart, marking (T0299)S49.CB as missing WARNING: atoms too close: (T0299)I50.CA and (T0299)I50.CB only 0.000 apart, marking (T0299)I50.CB as missing WARNING: atoms too close: (T0299)V66.CA and (T0299)V66.CB only 0.000 apart, marking (T0299)V66.CB as missing WARNING: atoms too close: (T0299)P69.CA and (T0299)P69.CB only 0.000 apart, marking (T0299)P69.CB as missing WARNING: atoms too close: (T0299)L103.CA and (T0299)L103.CB only 0.000 apart, marking (T0299)L103.CB as missing WARNING: atoms too close: (T0299)V111.CA and (T0299)V111.CB only 0.000 apart, marking (T0299)V111.CB as missing WARNING: atoms too close: (T0299)E126.CA and (T0299)E126.CB only 0.000 apart, marking (T0299)E126.CB as missing WARNING: atoms too close: (T0299)Y129.CA and (T0299)Y129.CB only 0.000 apart, marking (T0299)Y129.CB as missing WARNING: atoms too close: (T0299)L133.CA and (T0299)L133.CB only 0.000 apart, marking (T0299)L133.CB as missing WARNING: atoms too close: (T0299)F136.CA and (T0299)F136.CB only 0.000 apart, marking (T0299)F136.CB as missing WARNING: atoms too close: (T0299)Y145.CA and (T0299)Y145.CB only 0.000 apart, marking (T0299)Y145.CB as missing WARNING: atoms too close: (T0299)L155.CA and (T0299)L155.CB only 0.000 apart, marking (T0299)L155.CB as missing WARNING: atoms too close: (T0299)A168.CA and (T0299)A168.CB only 0.000 apart, marking (T0299)A168.CB as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)V8.CA and (T0299)V8.CB only 0.000 apart, marking (T0299)V8.CB as missing WARNING: atoms too close: (T0299)I11.CA and (T0299)I11.CB only 0.000 apart, marking (T0299)I11.CB as missing WARNING: atoms too close: (T0299)R25.CA and (T0299)R25.CB only 0.000 apart, marking (T0299)R25.CB as missing WARNING: atoms too close: (T0299)N30.CA and (T0299)N30.CB only 0.000 apart, marking (T0299)N30.CB as missing WARNING: atoms too close: (T0299)K53.CA and (T0299)K53.CB only 0.000 apart, marking (T0299)K53.CB as missing WARNING: atoms too close: (T0299)E58.CA and (T0299)E58.CB only 0.000 apart, marking (T0299)E58.CB as missing WARNING: atoms too close: (T0299)K59.CA and (T0299)K59.CB only 0.000 apart, marking (T0299)K59.CB as missing WARNING: atoms too close: (T0299)F70.CA and (T0299)F70.CB only 0.000 apart, marking (T0299)F70.CB as missing WARNING: atoms too close: (T0299)F74.CA and (T0299)F74.CB only 0.000 apart, marking (T0299)F74.CB as missing WARNING: atoms too close: (T0299)F82.CA and (T0299)F82.CB only 0.000 apart, marking (T0299)F82.CB as missing WARNING: atoms too close: (T0299)E85.CA and (T0299)E85.CB only 0.000 apart, marking (T0299)E85.CB as missing WARNING: atoms too close: (T0299)N88.CA and (T0299)N88.CB only 0.000 apart, marking (T0299)N88.CB as missing WARNING: atoms too close: (T0299)W92.CA and (T0299)W92.CB only 0.000 apart, marking (T0299)W92.CB as missing WARNING: atoms too close: (T0299)A98.CA and (T0299)A98.CB only 0.000 apart, marking (T0299)A98.CB as missing WARNING: atoms too close: (T0299)K100.CA and (T0299)K100.CB only 0.000 apart, marking (T0299)K100.CB as missing WARNING: atoms too close: (T0299)E119.CA and (T0299)E119.CB only 0.000 apart, marking (T0299)E119.CB as missing WARNING: atoms too close: (T0299)L121.CA and (T0299)L121.CB only 0.000 apart, marking (T0299)L121.CB as missing WARNING: atoms too close: (T0299)E126.CA and (T0299)E126.CB only 0.000 apart, marking (T0299)E126.CB as missing WARNING: atoms too close: (T0299)F130.CA and (T0299)F130.CB only 0.000 apart, marking (T0299)F130.CB as missing WARNING: atoms too close: (T0299)K139.CA and (T0299)K139.CB only 0.000 apart, marking (T0299)K139.CB as missing WARNING: atoms too close: (T0299)Y145.CA and (T0299)Y145.CB only 0.000 apart, marking (T0299)Y145.CB as missing WARNING: atoms too close: (T0299)L155.CA and (T0299)L155.CB only 0.000 apart, marking (T0299)L155.CB as missing WARNING: atoms too close: (T0299)K180.CA and (T0299)K180.CB only 0.000 apart, marking (T0299)K180.CB as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)Y4.CA and (T0299)Y4.CB only 0.000 apart, marking (T0299)Y4.CB as missing WARNING: atoms too close: (T0299)A5.CA and (T0299)A5.CB only 0.000 apart, marking (T0299)A5.CB as missing WARNING: atoms too close: (T0299)L6.CA and (T0299)L6.CB only 0.000 apart, marking (T0299)L6.CB as missing WARNING: atoms too close: (T0299)I11.CA and (T0299)I11.CB only 0.000 apart, marking (T0299)I11.CB as missing WARNING: atoms too close: (T0299)K16.CA and (T0299)K16.CB only 0.000 apart, marking (T0299)K16.CB as missing WARNING: atoms too close: (T0299)V19.CA and (T0299)V19.CB only 0.000 apart, marking (T0299)V19.CB as missing WARNING: atoms too close: (T0299)L33.CA and (T0299)L33.CB only 0.000 apart, marking (T0299)L33.CB as missing WARNING: atoms too close: (T0299)I45.CA and (T0299)I45.CB only 0.000 apart, marking (T0299)I45.CB as missing WARNING: atoms too close: (T0299)Y68.CA and (T0299)Y68.CB only 0.000 apart, marking (T0299)Y68.CB as missing WARNING: atoms too close: (T0299)P69.CA and (T0299)P69.CB only 0.000 apart, marking (T0299)P69.CB as missing WARNING: atoms too close: (T0299)F70.CA and (T0299)F70.CB only 0.000 apart, marking (T0299)F70.CB as missing WARNING: atoms too close: (T0299)Q72.CA and (T0299)Q72.CB only 0.000 apart, marking (T0299)Q72.CB as missing WARNING: atoms too close: (T0299)F82.CA and (T0299)F82.CB only 0.000 apart, marking (T0299)F82.CB as missing WARNING: atoms too close: (T0299)L89.CA and (T0299)L89.CB only 0.000 apart, marking (T0299)L89.CB as missing WARNING: atoms too close: (T0299)A91.CA and (T0299)A91.CB only 0.000 apart, marking (T0299)A91.CB as missing WARNING: atoms too close: (T0299)L128.CA and (T0299)L128.CB only 0.000 apart, marking (T0299)L128.CB as missing WARNING: atoms too close: (T0299)F130.CA and (T0299)F130.CB only 0.000 apart, marking (T0299)F130.CB as missing WARNING: atoms too close: (T0299)K132.CA and (T0299)K132.CB only 0.000 apart, marking (T0299)K132.CB as missing WARNING: atoms too close: (T0299)L133.CA and (T0299)L133.CB only 0.000 apart, marking (T0299)L133.CB as missing WARNING: atoms too close: (T0299)W137.CA and (T0299)W137.CB only 0.000 apart, marking (T0299)W137.CB as missing WARNING: atoms too close: (T0299)E143.CA and (T0299)E143.CB only 0.000 apart, marking (T0299)E143.CB as missing WARNING: atoms too close: (T0299)Y153.CA and (T0299)Y153.CB only 0.000 apart, marking (T0299)Y153.CB as missing WARNING: atoms too close: (T0299)K156.CA and (T0299)K156.CB only 0.000 apart, marking (T0299)K156.CB as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)L28.CA and (T0299)L28.CB only 0.000 apart, marking (T0299)L28.CB as missing WARNING: atoms too close: (T0299)T29.CA and (T0299)T29.CB only 0.000 apart, marking (T0299)T29.CB as missing WARNING: atoms too close: (T0299)K35.CA and (T0299)K35.CB only 0.000 apart, marking (T0299)K35.CB as missing WARNING: atoms too close: (T0299)Y39.CA and (T0299)Y39.CB only 0.000 apart, marking (T0299)Y39.CB as missing WARNING: atoms too close: (T0299)S49.CA and (T0299)S49.CB only 0.000 apart, marking (T0299)S49.CB as missing WARNING: atoms too close: (T0299)D51.CA and (T0299)D51.CB only 0.000 apart, marking (T0299)D51.CB as missing WARNING: atoms too close: (T0299)F64.CA and (T0299)F64.CB only 0.000 apart, marking (T0299)F64.CB as missing WARNING: atoms too close: (T0299)V66.CA and (T0299)V66.CB only 0.000 apart, marking (T0299)V66.CB as missing WARNING: atoms too close: (T0299)Y68.CA and (T0299)Y68.CB only 0.000 apart, marking (T0299)Y68.CB as missing WARNING: atoms too close: (T0299)F74.CA and (T0299)F74.CB only 0.000 apart, marking (T0299)F74.CB as missing WARNING: atoms too close: (T0299)L76.CA and (T0299)L76.CB only 0.000 apart, marking (T0299)L76.CB as missing WARNING: atoms too close: (T0299)L79.CA and (T0299)L79.CB only 0.000 apart, marking (T0299)L79.CB as missing WARNING: atoms too close: (T0299)E80.CA and (T0299)E80.CB only 0.000 apart, marking (T0299)E80.CB as missing WARNING: atoms too close: (T0299)E85.CA and (T0299)E85.CB only 0.000 apart, marking (T0299)E85.CB as missing WARNING: atoms too close: (T0299)L86.CA and (T0299)L86.CB only 0.000 apart, marking (T0299)L86.CB as missing WARNING: atoms too close: (T0299)A91.CA and (T0299)A91.CB only 0.000 apart, marking (T0299)A91.CB as missing WARNING: atoms too close: (T0299)S94.CA and (T0299)S94.CB only 0.000 apart, marking (T0299)S94.CB as missing WARNING: atoms too close: (T0299)L103.CA and (T0299)L103.CB only 0.000 apart, marking (T0299)L103.CB as missing WARNING: atoms too close: (T0299)V118.CA and (T0299)V118.CB only 0.000 apart, marking (T0299)V118.CB as missing WARNING: atoms too close: (T0299)E126.CA and (T0299)E126.CB only 0.000 apart, marking (T0299)E126.CB as missing WARNING: atoms too close: (T0299)K139.CA and (T0299)K139.CB only 0.000 apart, marking (T0299)K139.CB as missing WARNING: atoms too close: (T0299)S144.CA and (T0299)S144.CB only 0.000 apart, marking (T0299)S144.CB as missing WARNING: atoms too close: (T0299)L155.CA and (T0299)L155.CB only 0.000 apart, marking (T0299)L155.CB as missing WARNING: atoms too close: (T0299)P158.CA and (T0299)P158.CB only 0.000 apart, marking (T0299)P158.CB as missing WARNING: atoms too close: (T0299)F171.CA and (T0299)F171.CB only 0.000 apart, marking (T0299)F171.CB as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 Skipped atom 5, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0299)G131.O and (T0299)K132.N only 0.000 apart, marking (T0299)K132.N as missing # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0299 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 244 model score 1.3326 model score 1.2854 model score 1.6941 model score 1.3220 model score 1.2773 model score 1.6190 model score 1.2723 model score 1.3906 model score 1.2745 model score 1.2745 model score 1.4858 model score 2.0076 model score 1.7585 model score 1.3903 model score 1.2745 model score 1.9855 model score 1.9076 model score 1.8731 model score 2.2919 model score 1.0554 model score 1.0554 model score 1.0678 model score 1.4179 model score 1.3577 model score 1.1951 model score 1.6438 model score 1.5355 model score 1.5278 model score 1.5386 model score 1.5324 model score 1.5352 model score 1.7218 model score 1.6614 model score 1.1508 model score 1.7303 model score 1.7838 model score 1.8504 model score 1.4803 model score 1.4888 model score 1.2657 model score 1.5943 model score 1.2809 model score 1.2787 model score 1.2797 model score 1.2786 model score 1.2803 model score 1.8586 model score 0.9531 model score 1.8698 model score 0.9479 model score 1.4302 model score 1.7303 model score 1.8698 model score 1.2692 model score 1.7218 model score 1.1508 model score 2.2875 model score 1.9613 model score 1.9753 model score 2.1036 model score 1.7819 model score 1.2849 model score 1.2771 model score 1.2794 model score 1.2788 model score 1.2769 model score 1.2771 model score 1.2794 model score 1.2769 model score 1.2771 model score 1.2832 model score 2.1225 model score 2.3984 model score 2.2432 model score 2.3661 model score 2.4365 model score 1.7676 model score 1.5584 model score 2.2288 model score 1.3409 model score 1.8432 model score 1.2831 model score 1.2755 model score 1.2819 model score 1.2731 model score 1.2792 model score 2.0866 model score 1.8626 model score 2.0327 model score 2.3292 model score 2.4591 model score 1.8984 model score 1.6462 model score 1.7129 model score 2.1672 model score 1.8499 model score 1.8094 model score 3.0324 model score 2.4182 model score 1.8532 model score 1.9997 model score 0.9265 model score 1.7802 model score 2.0730 model score 1.3326 model score 1.2747 model score 1.6270 model score 1.3840 model score 1.3250 model score 1.5122 model score 1.2767 model score 1.6956 model score 1.8926 model score 1.3187 model score 1.4166 model score 1.4321 model score 1.0212 model score 0.9993 model score 1.2342 model score 0.8729 model score 1.0393 model score 1.2747 model score 1.4732 model score 1.4939 model score 1.4665 model score 1.4490 model score 1.4797 model score 1.4305 model score 1.4939 model score 1.4867 model score 1.4490 model score 1.3890 model score 1.3140 model score 1.2027 model score 1.3395 model score 1.3714 model score 1.3599 model score 1.2784 model score 1.7752 model score 2.0761 model score 1.9116 model score 1.8218 model score 2.0036 model score 1.0596 model score 1.3714 model score 1.2027 model score 1.3395 model score 1.6624 model score 0.7978 model score 1.8106 model score 1.1981 model score 1.6435 model score 1.1082 model score 1.2963 model score 1.0553 model score 1.3684 model score 1.1655 model score 1.2692 model score 1.0398 model score 1.3587 model score 0.8653 model score 1.1044 model score 1.3385 model score 1.0596 model score 1.3227 model score 1.3817 model score 1.3599 model score 1.5840 model score 1.7864 model score 1.7878 model score 1.6727 model score 1.9914 model score 1.5347 model score 1.2771 model score 1.2794 model score 1.2773 model score 1.2771 model score 1.2771 model score 1.8480 model score 1.2216 model score 1.3279 model score 1.1400 model score 1.0167 model score 1.7178 model score 1.3810 model score 1.8845 model score 1.6890 model score 1.6419 model score 1.2128 model score 1.6334 model score 1.7232 model score 0.8020 model score 1.8234 model score 1.3326 model score 2.1303 model score 1.1388 model score 1.7252 model score 2.1605 model score 1.2775 model score 1.2772 model score 1.2797 model score 1.2801 model score 1.2804 model score 1.4978 model score 1.2775 model score 1.2771 model score 1.2771 model score 1.2797 model score 1.2801 model score 1.3475 model score 0.9533 model score 0.7931 model score 1.0717 model score 0.9142 model score 1.0982 model score 1.4524 model score 1.2771 model score 1.2810 model score 1.2778 model score 1.2773 model score 1.2771 model score 1.1057 model score 1.5786 model score 1.7684 model score 1.3125 model score 1.4144 model score 2.1645 model score 2.3141 model score 1.8332 model score 2.0812 model score 1.8235 model score 1.5641 model score 1.5233 model score 1.3808 model score 1.5048 model score 1.5454 model score 1.4110 model score 2.0215 model score 1.7459 model score 1.8199 model score 2.2548 model score 1.6090 model score 1.2848 model score 1.5695 weight: 0.7831 eval: 1.3326 min: 0.7931 max: 3.0324 weight: 0.8021 eval: 1.2854 min: 0.7931 max: 3.0324 weight: 0.6379 eval: 1.6941 min: 0.7931 max: 3.0324 weight: 0.7874 eval: 1.3220 min: 0.7931 max: 3.0324 weight: 0.8054 eval: 1.2773 min: 0.7931 max: 3.0324 weight: 0.6681 eval: 1.6190 min: 0.7931 max: 3.0324 weight: 0.8074 eval: 1.2723 min: 0.7931 max: 3.0324 weight: 0.7599 eval: 1.3906 min: 0.7931 max: 3.0324 weight: 0.8065 eval: 1.2745 min: 0.7931 max: 3.0324 weight: 0.8065 eval: 1.2745 min: 0.7931 max: 3.0324 weight: 0.7216 eval: 1.4858 min: 0.7931 max: 3.0324 weight: 0.5119 eval: 2.0076 min: 0.7931 max: 3.0324 weight: 0.6120 eval: 1.7585 min: 0.7931 max: 3.0324 weight: 0.7600 eval: 1.3903 min: 0.7931 max: 3.0324 weight: 0.8065 eval: 1.2745 min: 0.7931 max: 3.0324 weight: 0.5208 eval: 1.9855 min: 0.7931 max: 3.0324 weight: 0.5521 eval: 1.9076 min: 0.7931 max: 3.0324 weight: 0.5659 eval: 1.8731 min: 0.7931 max: 3.0324 weight: 0.3976 eval: 2.2919 min: 0.7931 max: 3.0324 weight: 0.8946 eval: 1.0554 min: 0.7931 max: 3.0324 weight: 0.8946 eval: 1.0554 min: 0.7931 max: 3.0324 weight: 0.8896 eval: 1.0678 min: 0.7931 max: 3.0324 weight: 0.7489 eval: 1.4179 min: 0.7931 max: 3.0324 weight: 0.7731 eval: 1.3577 min: 0.7931 max: 3.0324 weight: 0.8384 eval: 1.1951 min: 0.7931 max: 3.0324 weight: 0.6581 eval: 1.6438 min: 0.7931 max: 3.0324 weight: 0.7016 eval: 1.5355 min: 0.7931 max: 3.0324 weight: 0.7047 eval: 1.5278 min: 0.7931 max: 3.0324 weight: 0.7004 eval: 1.5386 min: 0.7931 max: 3.0324 weight: 0.7029 eval: 1.5324 min: 0.7931 max: 3.0324 weight: 0.7017 eval: 1.5352 min: 0.7931 max: 3.0324 weight: 0.6267 eval: 1.7218 min: 0.7931 max: 3.0324 weight: 0.6510 eval: 1.6614 min: 0.7931 max: 3.0324 weight: 0.8562 eval: 1.1508 min: 0.7931 max: 3.0324 weight: 0.6233 eval: 1.7303 min: 0.7931 max: 3.0324 weight: 0.6018 eval: 1.7838 min: 0.7931 max: 3.0324 weight: 0.5751 eval: 1.8504 min: 0.7931 max: 3.0324 weight: 0.7238 eval: 1.4803 min: 0.7931 max: 3.0324 weight: 0.7204 eval: 1.4888 min: 0.7931 max: 3.0324 weight: 0.8100 eval: 1.2657 min: 0.7931 max: 3.0324 weight: 0.6780 eval: 1.5943 min: 0.7931 max: 3.0324 weight: 0.8039 eval: 1.2809 min: 0.7931 max: 3.0324 weight: 0.8048 eval: 1.2787 min: 0.7931 max: 3.0324 weight: 0.8044 eval: 1.2797 min: 0.7931 max: 3.0324 weight: 0.8049 eval: 1.2786 min: 0.7931 max: 3.0324 weight: 0.8042 eval: 1.2803 min: 0.7931 max: 3.0324 weight: 0.5718 eval: 1.8586 min: 0.7931 max: 3.0324 weight: 0.9357 eval: 0.9531 min: 0.7931 max: 3.0324 weight: 0.5673 eval: 1.8698 min: 0.7931 max: 3.0324 weight: 0.9378 eval: 0.9479 min: 0.7931 max: 3.0324 weight: 0.7439 eval: 1.4302 min: 0.7931 max: 3.0324 weight: 0.6233 eval: 1.7303 min: 0.7931 max: 3.0324 weight: 0.5673 eval: 1.8698 min: 0.7931 max: 3.0324 weight: 0.8086 eval: 1.2692 min: 0.7931 max: 3.0324 weight: 0.6267 eval: 1.7218 min: 0.7931 max: 3.0324 weight: 0.8562 eval: 1.1508 min: 0.7931 max: 3.0324 weight: 0.3994 eval: 2.2875 min: 0.7931 max: 3.0324 weight: 0.5305 eval: 1.9613 min: 0.7931 max: 3.0324 weight: 0.5249 eval: 1.9753 min: 0.7931 max: 3.0324 weight: 0.4733 eval: 2.1036 min: 0.7931 max: 3.0324 weight: 0.6026 eval: 1.7819 min: 0.7931 max: 3.0324 weight: 0.8023 eval: 1.2849 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8045 eval: 1.2794 min: 0.7931 max: 3.0324 weight: 0.8048 eval: 1.2788 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2769 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8045 eval: 1.2794 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2769 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8030 eval: 1.2832 min: 0.7931 max: 3.0324 weight: 0.4657 eval: 2.1225 min: 0.7931 max: 3.0324 weight: 0.3548 eval: 2.3984 min: 0.7931 max: 3.0324 weight: 0.4172 eval: 2.2432 min: 0.7931 max: 3.0324 weight: 0.3678 eval: 2.3661 min: 0.7931 max: 3.0324 weight: 0.3395 eval: 2.4365 min: 0.7931 max: 3.0324 weight: 0.6083 eval: 1.7676 min: 0.7931 max: 3.0324 weight: 0.6924 eval: 1.5584 min: 0.7931 max: 3.0324 weight: 0.4230 eval: 2.2288 min: 0.7931 max: 3.0324 weight: 0.7798 eval: 1.3409 min: 0.7931 max: 3.0324 weight: 0.5780 eval: 1.8432 min: 0.7931 max: 3.0324 weight: 0.8031 eval: 1.2831 min: 0.7931 max: 3.0324 weight: 0.8061 eval: 1.2755 min: 0.7931 max: 3.0324 weight: 0.8035 eval: 1.2819 min: 0.7931 max: 3.0324 weight: 0.8071 eval: 1.2731 min: 0.7931 max: 3.0324 weight: 0.8046 eval: 1.2792 min: 0.7931 max: 3.0324 weight: 0.4801 eval: 2.0866 min: 0.7931 max: 3.0324 weight: 0.5702 eval: 1.8626 min: 0.7931 max: 3.0324 weight: 0.5018 eval: 2.0327 min: 0.7931 max: 3.0324 weight: 0.3826 eval: 2.3292 min: 0.7931 max: 3.0324 weight: 0.3304 eval: 2.4591 min: 0.7931 max: 3.0324 weight: 0.5557 eval: 1.8984 min: 0.7931 max: 3.0324 weight: 0.6571 eval: 1.6462 min: 0.7931 max: 3.0324 weight: 0.6303 eval: 1.7129 min: 0.7931 max: 3.0324 weight: 0.4477 eval: 2.1672 min: 0.7931 max: 3.0324 weight: 0.5753 eval: 1.8499 min: 0.7931 max: 3.0324 weight: 0.5915 eval: 1.8094 min: 0.7931 max: 3.0324 weight: 0.1000 eval: 3.0324 min: 0.7931 max: 3.0324 weight: 0.3469 eval: 2.4182 min: 0.7931 max: 3.0324 weight: 0.5739 eval: 1.8532 min: 0.7931 max: 3.0324 weight: 0.5150 eval: 1.9997 min: 0.7931 max: 3.0324 weight: 0.9464 eval: 0.9265 min: 0.7931 max: 3.0324 weight: 0.6033 eval: 1.7802 min: 0.7931 max: 3.0324 weight: 0.4856 eval: 2.0730 min: 0.7931 max: 3.0324 weight: 0.7832 eval: 1.3326 min: 0.7931 max: 3.0324 weight: 0.8064 eval: 1.2747 min: 0.7931 max: 3.0324 weight: 0.6648 eval: 1.6270 min: 0.7931 max: 3.0324 weight: 0.7625 eval: 1.3840 min: 0.7931 max: 3.0324 weight: 0.7862 eval: 1.3250 min: 0.7931 max: 3.0324 weight: 0.7110 eval: 1.5122 min: 0.7931 max: 3.0324 weight: 0.8056 eval: 1.2767 min: 0.7931 max: 3.0324 weight: 0.6373 eval: 1.6956 min: 0.7931 max: 3.0324 weight: 0.5581 eval: 1.8926 min: 0.7931 max: 3.0324 weight: 0.7888 eval: 1.3187 min: 0.7931 max: 3.0324 weight: 0.7494 eval: 1.4166 min: 0.7931 max: 3.0324 weight: 0.7432 eval: 1.4321 min: 0.7931 max: 3.0324 weight: 0.9083 eval: 1.0212 min: 0.7931 max: 3.0324 weight: 0.9171 eval: 0.9993 min: 0.7931 max: 3.0324 weight: 0.8227 eval: 1.2342 min: 0.7931 max: 3.0324 weight: 0.9679 eval: 0.8729 min: 0.7931 max: 3.0324 weight: 0.9011 eval: 1.0393 min: 0.7931 max: 3.0324 weight: 0.8064 eval: 1.2747 min: 0.7931 max: 3.0324 weight: 0.7266 eval: 1.4732 min: 0.7931 max: 3.0324 weight: 0.7183 eval: 1.4939 min: 0.7931 max: 3.0324 weight: 0.7293 eval: 1.4665 min: 0.7931 max: 3.0324 weight: 0.7364 eval: 1.4490 min: 0.7931 max: 3.0324 weight: 0.7240 eval: 1.4797 min: 0.7931 max: 3.0324 weight: 0.7438 eval: 1.4305 min: 0.7931 max: 3.0324 weight: 0.7183 eval: 1.4939 min: 0.7931 max: 3.0324 weight: 0.7212 eval: 1.4867 min: 0.7931 max: 3.0324 weight: 0.7364 eval: 1.4490 min: 0.7931 max: 3.0324 weight: 0.7605 eval: 1.3890 min: 0.7931 max: 3.0324 weight: 0.7906 eval: 1.3140 min: 0.7931 max: 3.0324 weight: 0.8354 eval: 1.2027 min: 0.7931 max: 3.0324 weight: 0.7804 eval: 1.3395 min: 0.7931 max: 3.0324 weight: 0.7676 eval: 1.3714 min: 0.7931 max: 3.0324 weight: 0.7722 eval: 1.3599 min: 0.7931 max: 3.0324 weight: 0.8050 eval: 1.2784 min: 0.7931 max: 3.0324 weight: 0.6053 eval: 1.7752 min: 0.7931 max: 3.0324 weight: 0.4844 eval: 2.0761 min: 0.7931 max: 3.0324 weight: 0.5504 eval: 1.9116 min: 0.7931 max: 3.0324 weight: 0.5865 eval: 1.8218 min: 0.7931 max: 3.0324 weight: 0.5135 eval: 2.0036 min: 0.7931 max: 3.0324 weight: 0.8929 eval: 1.0596 min: 0.7931 max: 3.0324 weight: 0.7676 eval: 1.3714 min: 0.7931 max: 3.0324 weight: 0.8354 eval: 1.2027 min: 0.7931 max: 3.0324 weight: 0.7804 eval: 1.3395 min: 0.7931 max: 3.0324 weight: 0.6506 eval: 1.6624 min: 0.7931 max: 3.0324 weight: 0.9981 eval: 0.7978 min: 0.7931 max: 3.0324 weight: 0.5910 eval: 1.8106 min: 0.7931 max: 3.0324 weight: 0.8372 eval: 1.1981 min: 0.7931 max: 3.0324 weight: 0.6582 eval: 1.6435 min: 0.7931 max: 3.0324 weight: 0.8734 eval: 1.1082 min: 0.7931 max: 3.0324 weight: 0.7977 eval: 1.2963 min: 0.7931 max: 3.0324 weight: 0.8946 eval: 1.0553 min: 0.7931 max: 3.0324 weight: 0.7688 eval: 1.3684 min: 0.7931 max: 3.0324 weight: 0.8503 eval: 1.1655 min: 0.7931 max: 3.0324 weight: 0.8086 eval: 1.2692 min: 0.7931 max: 3.0324 weight: 0.9008 eval: 1.0398 min: 0.7931 max: 3.0324 weight: 0.7727 eval: 1.3587 min: 0.7931 max: 3.0324 weight: 0.9710 eval: 0.8653 min: 0.7931 max: 3.0324 weight: 0.8749 eval: 1.1044 min: 0.7931 max: 3.0324 weight: 0.7808 eval: 1.3385 min: 0.7931 max: 3.0324 weight: 0.8929 eval: 1.0596 min: 0.7931 max: 3.0324 weight: 0.7871 eval: 1.3227 min: 0.7931 max: 3.0324 weight: 0.7634 eval: 1.3817 min: 0.7931 max: 3.0324 weight: 0.7722 eval: 1.3599 min: 0.7931 max: 3.0324 weight: 0.6821 eval: 1.5840 min: 0.7931 max: 3.0324 weight: 0.6008 eval: 1.7864 min: 0.7931 max: 3.0324 weight: 0.6002 eval: 1.7878 min: 0.7931 max: 3.0324 weight: 0.6465 eval: 1.6727 min: 0.7931 max: 3.0324 weight: 0.5184 eval: 1.9914 min: 0.7931 max: 3.0324 weight: 0.7019 eval: 1.5347 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8045 eval: 1.2794 min: 0.7931 max: 3.0324 weight: 0.8054 eval: 1.2773 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.5760 eval: 1.8480 min: 0.7931 max: 3.0324 weight: 0.8278 eval: 1.2216 min: 0.7931 max: 3.0324 weight: 0.7850 eval: 1.3279 min: 0.7931 max: 3.0324 weight: 0.8606 eval: 1.1400 min: 0.7931 max: 3.0324 weight: 0.9101 eval: 1.0167 min: 0.7931 max: 3.0324 weight: 0.6283 eval: 1.7178 min: 0.7931 max: 3.0324 weight: 0.7637 eval: 1.3810 min: 0.7931 max: 3.0324 weight: 0.5614 eval: 1.8845 min: 0.7931 max: 3.0324 weight: 0.6399 eval: 1.6890 min: 0.7931 max: 3.0324 weight: 0.6589 eval: 1.6419 min: 0.7931 max: 3.0324 weight: 0.8313 eval: 1.2128 min: 0.7931 max: 3.0324 weight: 0.6623 eval: 1.6334 min: 0.7931 max: 3.0324 weight: 0.6262 eval: 1.7232 min: 0.7931 max: 3.0324 weight: 0.9964 eval: 0.8020 min: 0.7931 max: 3.0324 weight: 0.5859 eval: 1.8234 min: 0.7931 max: 3.0324 weight: 0.7831 eval: 1.3326 min: 0.7931 max: 3.0324 weight: 0.4625 eval: 2.1303 min: 0.7931 max: 3.0324 weight: 0.8611 eval: 1.1388 min: 0.7931 max: 3.0324 weight: 0.6254 eval: 1.7252 min: 0.7931 max: 3.0324 weight: 0.4504 eval: 2.1605 min: 0.7931 max: 3.0324 weight: 0.8053 eval: 1.2775 min: 0.7931 max: 3.0324 weight: 0.8054 eval: 1.2772 min: 0.7931 max: 3.0324 weight: 0.8044 eval: 1.2797 min: 0.7931 max: 3.0324 weight: 0.8043 eval: 1.2801 min: 0.7931 max: 3.0324 weight: 0.8041 eval: 1.2804 min: 0.7931 max: 3.0324 weight: 0.7168 eval: 1.4978 min: 0.7931 max: 3.0324 weight: 0.8053 eval: 1.2775 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8044 eval: 1.2797 min: 0.7931 max: 3.0324 weight: 0.8043 eval: 1.2801 min: 0.7931 max: 3.0324 weight: 0.7772 eval: 1.3475 min: 0.7931 max: 3.0324 weight: 0.9356 eval: 0.9533 min: 0.7931 max: 3.0324 weight: 1.0000 eval: 0.7931 min: 0.7931 max: 3.0324 weight: 0.8880 eval: 1.0717 min: 0.7931 max: 3.0324 weight: 0.9513 eval: 0.9142 min: 0.7931 max: 3.0324 weight: 0.8774 eval: 1.0982 min: 0.7931 max: 3.0324 weight: 0.7350 eval: 1.4524 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8039 eval: 1.2810 min: 0.7931 max: 3.0324 weight: 0.8052 eval: 1.2778 min: 0.7931 max: 3.0324 weight: 0.8054 eval: 1.2773 min: 0.7931 max: 3.0324 weight: 0.8055 eval: 1.2771 min: 0.7931 max: 3.0324 weight: 0.8744 eval: 1.1057 min: 0.7931 max: 3.0324 weight: 0.6843 eval: 1.5786 min: 0.7931 max: 3.0324 weight: 0.6080 eval: 1.7684 min: 0.7931 max: 3.0324 weight: 0.7912 eval: 1.3125 min: 0.7931 max: 3.0324 weight: 0.7503 eval: 1.4144 min: 0.7931 max: 3.0324 weight: 0.4488 eval: 2.1645 min: 0.7931 max: 3.0324 weight: 0.3887 eval: 2.3141 min: 0.7931 max: 3.0324 weight: 0.5820 eval: 1.8332 min: 0.7931 max: 3.0324 weight: 0.4823 eval: 2.0812 min: 0.7931 max: 3.0324 weight: 0.5859 eval: 1.8235 min: 0.7931 max: 3.0324 weight: 0.6901 eval: 1.5641 min: 0.7931 max: 3.0324 weight: 0.7065 eval: 1.5233 min: 0.7931 max: 3.0324 weight: 0.7638 eval: 1.3808 min: 0.7931 max: 3.0324 weight: 0.7140 eval: 1.5048 min: 0.7931 max: 3.0324 weight: 0.6976 eval: 1.5454 min: 0.7931 max: 3.0324 weight: 0.7516 eval: 1.4110 min: 0.7931 max: 3.0324 weight: 0.5063 eval: 2.0215 min: 0.7931 max: 3.0324 weight: 0.6170 eval: 1.7459 min: 0.7931 max: 3.0324 weight: 0.5873 eval: 1.8199 min: 0.7931 max: 3.0324 weight: 0.4125 eval: 2.2548 min: 0.7931 max: 3.0324 weight: 0.6721 eval: 1.6090 min: 0.7931 max: 3.0324 weight: 0.8024 eval: 1.2848 min: 0.7931 max: 3.0324 weight: 0.6880 eval: 1.5695 min: 0.7931 max: 3.0324 Adding 10731 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -316.9425, CN propb: -316.9425 weights: 0.2470 constraints: 863 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 863 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 863 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 9868 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 9868 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 10731 # command: