# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/ # command:# Making conformation for sequence T0313 numbered 1 through 322 Created new target T0313 from T0313.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0313//projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0313/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)G233.CA) [> 3.4847 = 5.8078 < 7.5501] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)L231.CB) [> 4.2538 = 7.0897 < 9.2166] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)S234.CB) [> 3.7750 = 6.2917 < 8.1792] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)L231.CB) [> 3.1488 = 5.2480 < 6.8224] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)L231.CB) [> 3.5961 = 5.9935 < 7.7916] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)D230.CB) [> 3.1090 = 5.1817 < 6.7362] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V229.CB) [> 4.0475 = 6.7459 < 8.7696] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)M94.CB) [> 2.9750 = 4.9584 < 6.4460] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)T93.CB) [> 3.2270 = 5.3783 < 6.9918] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)T91.CB) [> 4.5505 = 7.5842 < 9.8595] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L231.CB) [> 3.5666 = 5.9444 < 7.7277] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)V229.CB) [> 2.7021 = 4.5034 < 5.8545] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)V229.CB) [> 4.0860 = 6.8100 < 8.8530] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L228.CB) [> 3.1829 = 5.3049 < 6.8964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)N227.CB) [> 4.3800 = 7.2999 < 9.4899] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)I103.CB) [> 3.8875 = 6.4791 < 8.4229] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)V229.CB) [> 4.0477 = 6.7461 < 8.7700] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)N227.CB) [> 2.7220 = 4.5367 < 5.8978] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)N227.CB) [> 4.2830 = 7.1383 < 9.2798] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)L226.CB) [> 2.9825 = 4.9708 < 6.4620] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)K225.CB) [> 4.4522 = 7.4203 < 9.6464] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)K225.CB) [> 2.9124 = 4.8540 < 6.3101] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)I178.CB) [> 2.8967 = 4.8279 < 6.2763] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V175.CB) [> 3.4797 = 5.7994 < 7.5392] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)L228.CB) [> 4.2600 = 7.1000 < 9.2300] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)L226.CB) [> 4.2255 = 7.0425 < 9.1553] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)L228.CB) [> 3.1944 = 5.3241 < 6.9213] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)L207.CB) [> 3.5047 = 5.8412 < 7.5935] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)F182.CB) [> 4.1115 = 6.8524 < 8.9081] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)Q105.CB) [> 4.2702 = 7.1171 < 9.2522] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)N104.CB) [> 3.4104 = 5.6839 < 7.3891] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)D230.CB) [> 2.8164 = 4.6940 < 6.1023] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)L228.CB) [> 3.7281 = 6.2135 < 8.0776] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)N104.CB) [> 3.4873 = 5.8121 < 7.5558] w=1.0000 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)I103.CB) [> 3.2340 = 5.3900 < 7.0069] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)I103.CB) [> 3.8222 = 6.3704 < 8.2815] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)G102.CA) [> 3.9200 = 6.5333 < 8.4932] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)G102.CA) [> 4.4570 = 7.4283 < 9.6568] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)D230.CB) [> 3.5342 = 5.8904 < 7.6575] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)G233.CA) [> 4.3602 = 7.2670 < 9.4470] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)L231.CB) [> 3.9521 = 6.5868 < 8.5628] w=1.0000 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)D230.CB) [> 3.3092 = 5.5154 < 7.1700] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)G233.CA) [> 3.5801 = 5.9669 < 7.7569] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)S234.CB) [> 2.6802 = 4.4670 < 5.8071] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F52.CB, (T0313)V61.CB) [> 3.6698 = 6.1163 < 7.9512] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)Y92.CB) [> 4.3258 = 7.2097 < 9.3726] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)G89.CA) [> 3.2124 = 5.3539 < 6.9601] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)A88.CB) [> 3.8800 = 6.4668 < 8.4068] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)F52.CB) [> 4.1061 = 6.8435 < 8.8965] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)T93.CB) [> 3.7507 = 6.2512 < 8.1266] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V61.CB) [> 4.0632 = 6.7720 < 8.8035] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)A56.CB) [> 4.0418 = 6.7363 < 8.7572] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)F52.CB) [> 2.4964 = 4.1607 < 5.4089] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)F52.CB) [> 4.0550 = 6.7583 < 8.7858] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V51.CB) [> 2.9915 = 4.9858 < 6.4816] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)K50.CB) [> 4.4387 = 7.3979 < 9.6173] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)L48.CB) [> 3.0516 = 5.0860 < 6.6118] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)F46.CB) [> 4.4911 = 7.4852 < 9.7307] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)F52.CB) [> 3.9333 = 6.5555 < 8.5222] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V51.CB) [> 4.3858 = 7.3097 < 9.5026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)K50.CB) [> 2.6739 = 4.4565 < 5.7934] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)D49.CB) [> 3.5936 = 5.9893 < 7.7861] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)L48.CB) [> 3.6635 = 6.1059 < 7.9376] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)D49.CB) [> 3.3566 = 5.5943 < 7.2726] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)L48.CB) [> 3.0564 = 5.0941 < 6.6223] w=1.0000 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)D49.CB) [> 2.7268 = 4.5446 < 5.9080] w=1.0000 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)G224.CA) [> 3.4523 = 5.7538 < 7.4799] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)G224.CA) [> 3.8245 = 6.3742 < 8.2865] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)G224.CA) [> 2.7342 = 4.5569 < 5.9240] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)T223.CB) [> 3.8459 = 6.4098 < 8.3327] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)E114.CB) [> 3.6949 = 6.1582 < 8.0057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)L226.CB) [> 3.0702 = 5.1171 < 6.6522] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)G224.CA) [> 3.0269 = 5.0449 < 6.5584] w=1.0000 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)V211.CB) [> 3.4582 = 5.7637 < 7.4928] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L226.CB) [> 4.2488 = 7.0813 < 9.2057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L111.CB) [> 3.8886 = 6.4810 < 8.4253] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)L110.CB) [> 3.4220 = 5.7033 < 7.4143] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)A107.CB) [> 3.3960 = 5.6600 < 7.3580] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)V78.CB) [> 4.4848 = 7.4746 < 9.7170] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)I80.CB) [> 4.0129 = 6.6881 < 8.6946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)V78.CB) [> 2.8773 = 4.7955 < 6.2341] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)I80.CB) [> 4.1239 = 6.8732 < 8.9352] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)I103.CB) [> 3.5232 = 5.8720 < 7.6336] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)G102.CA) [> 4.2325 = 7.0541 < 9.1704] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V61.CB, (T0313)T93.CB) [> 3.9214 = 6.5357 < 8.4964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)G102.CA) [> 2.9862 = 4.9771 < 6.4702] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)D230.CB) [> 4.2051 = 7.0086 < 9.1111] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)V229.CB) [> 3.8901 = 6.4834 < 8.4285] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S203.CB, (T0313)A232.CB) [> 3.4166 = 5.6943 < 7.4026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)V181.CB) [> 3.9701 = 6.6168 < 8.6019] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)F170.CB) [> 3.7105 = 6.1841 < 8.0393] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)T168.CB) [> 2.6476 = 4.4126 < 5.7364] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)A205.CB) [> 4.4984 = 7.4973 < 9.7464] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)G185.CA) [> 2.7020 = 4.5033 < 5.8543] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)T168.CB) [> 3.3227 = 5.5378 < 7.1991] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)L167.CB) [> 3.2154 = 5.3590 < 6.9667] w=1.0000 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)G166.CA) [> 4.3970 = 7.3284 < 9.5269] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)V164.CB) [> 3.6901 = 6.1502 < 7.9952] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)L206.CB) [> 4.2708 = 7.1180 < 9.2534] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)H204.CB) [> 2.5085 = 4.1809 < 5.4352] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)S203.CB) [> 3.6950 = 6.1583 < 8.0057] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)A205.CB) [> 3.1552 = 5.2586 < 6.8362] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)H204.CB) [> 3.9534 = 6.5890 < 8.5657] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)S203.CB) [> 3.0426 = 5.0710 < 6.5923] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L206.CB) [> 3.2642 = 5.4403 < 7.0724] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L167.CB) [> 3.6437 = 6.0728 < 7.8946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)G213.CA, (T0313)T222.CB) [> 3.1488 = 5.2480 < 6.8224] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V211.CB, (T0313)K225.CB) [> 4.4240 = 7.3734 < 9.5854] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)K225.CB) [> 2.9956 = 4.9926 < 6.4904] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)G224.CA) [> 3.8991 = 6.4985 < 8.4481] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)L228.CB) [> 4.5051 = 7.5086 < 9.7611] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)L226.CB) [> 2.6732 = 4.4553 < 5.7920] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)K225.CB) [> 4.1873 = 6.9788 < 9.0725] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)N227.CB) [> 3.1732 = 5.2888 < 6.8754] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)L226.CB) [> 4.2325 = 7.0541 < 9.1703] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)K225.CB) [> 3.8476 = 6.4127 < 8.3365] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)L228.CB) [> 2.6170 = 4.3617 < 5.6703] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)N227.CB) [> 4.3734 = 7.2889 < 9.4756] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)V229.CB) [> 3.0455 = 5.0759 < 6.5986] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L228.CB) [> 4.3710 = 7.2851 < 9.4706] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)N227.CB) [> 3.5827 = 5.9711 < 7.7625] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A205.CB, (T0313)D230.CB) [> 2.5396 = 4.2327 < 5.5026] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A205.CB, (T0313)V229.CB) [> 4.2235 = 7.0392 < 9.1510] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)A232.CB) [> 3.2039 = 5.3398 < 6.9418] w=1.0000 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)L231.CB) [> 3.2799 = 5.4666 < 7.1065] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)V172.CB) [> 4.2647 = 7.1078 < 9.2401] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)Q171.CB) [> 3.1962 = 5.3269 < 6.9250] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)F170.CB) [> 3.9720 = 6.6199 < 8.6059] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)E169.CB) [> 2.9720 = 4.9534 < 6.4394] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V211.CB) [> 3.2978 = 5.4963 < 7.1451] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)T210.CB) [> 4.2031 = 7.0052 < 9.1067] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V209.CB) [> 3.7256 = 6.2094 < 8.0722] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)V172.CB) [> 2.9910 = 4.9850 < 6.4805] w=1.0000 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)Q171.CB) [> 4.2858 = 7.1430 < 9.2859] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)G213.CA) [> 4.0913 = 6.8189 < 8.8645] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)R212.CB) [> 2.7612 = 4.6020 < 5.9825] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)Q171.CB) [> 4.0049 = 6.6748 < 8.6773] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)G213.CA) [> 2.9421 = 4.9035 < 6.3746] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)R212.CB) [> 4.0129 = 6.6882 < 8.6947] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)V211.CB) [> 3.8745 = 6.4575 < 8.3947] w=1.0000 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)G213.CA) [> 3.8570 = 6.4284 < 8.3569] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)Y124.CB) [> 3.0289 = 5.0481 < 6.5625] w=1.0000 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)S174.CB) [> 3.9068 = 6.5113 < 8.4647] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)V209.CB) [> 4.3735 = 7.2892 < 9.4760] w=1.0000 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)I126.CB) [> 3.9867 = 6.6445 < 8.6378] w=1.0000 to align # Constraint # added constraint: constraint((T0313)Q109.CB, (T0313)V175.CB) [> 3.2003 = 5.3339 < 6.9341] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L141.CB) [> 3.6850 = 6.1417 < 7.9842] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)D140.CB) [> 3.4790 = 5.7984 < 7.5379] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)I208.CB) [> 4.5024 = 7.5040 < 9.7552] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L207.CB) [> 3.1706 = 5.2842 < 6.8695] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L206.CB) [> 4.4870 = 7.4784 < 9.7219] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L142.CB) [> 3.0785 = 5.1308 < 6.6701] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)L141.CB) [> 2.6116 = 4.3526 < 5.6584] w=1.0000 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)D140.CB) [> 4.5371 = 7.5619 < 9.8305] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)I208.CB) [> 2.7390 = 4.5650 < 5.9345] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L207.CB) [> 4.5767 = 7.6278 < 9.9162] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)F170.CB) [> 4.5438 = 7.5729 < 9.8448] w=1.0000 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)T210.CB) [> 2.8603 = 4.7671 < 6.1973] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)E169.CB) [> 4.2859 = 7.1432 < 9.2861] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)F170.CB) [> 3.3676 = 5.6126 < 7.2964] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)V172.CB) [> 3.4591 = 5.7651 < 7.4946] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)L207.CB) [> 4.2297 = 7.0495 < 9.1643] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)I208.CB) [> 3.9356 = 6.5593 < 8.5271] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)V209.CB) [> 3.1861 = 5.3102 < 6.9033] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)T210.CB) [> 4.5372 = 7.5621 < 9.8307] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L142.CB) [> 4.1324 = 6.8874 < 8.9536] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)L167.CB) [> 3.2569 = 5.4282 < 7.0566] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)T168.CB) [> 3.9482 = 6.5803 < 8.5543] w=1.0000 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)E169.CB) [> 3.0995 = 5.1658 < 6.7155] w=1.0000 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)I103.CB) [> 3.5975 = 5.9959 < 7.7947] w=0.9738 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)V214.CB) [> 4.1930 = 6.9883 < 9.0848] w=0.9738 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)V214.CB) [> 2.9076 = 4.8460 < 6.2998] w=0.9738 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)F276.CB) [> 3.7802 = 6.3003 < 8.1904] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)P275.CB) [> 3.7489 = 6.2481 < 8.1226] w=0.9552 to align # Constraint # added constraint: constraint((T0313)D262.CB, (T0313)P275.CB) [> 3.3393 = 5.5654 < 7.2351] w=0.9552 to align # Constraint # added constraint: constraint((T0313)G261.CA, (T0313)F317.CB) [> 4.2506 = 7.0844 < 9.2098] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)T282.CB) [> 3.4662 = 5.7770 < 7.5101] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)L281.CB) [> 3.7145 = 6.1908 < 8.0480] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)S279.CB) [> 4.2710 = 7.1183 < 9.2538] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)T282.CB) [> 3.0592 = 5.0987 < 6.6283] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)L281.CB) [> 4.2389 = 7.0648 < 9.1842] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)S279.CB) [> 2.2454 = 3.7424 < 4.8651] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)N278.CB) [> 2.5586 = 4.2643 < 5.5436] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)P275.CB) [> 3.8072 = 6.3453 < 8.2489] w=0.9552 to align # Constraint # added constraint: constraint((T0313)S256.CB, (T0313)L281.CB) [> 2.5678 = 4.2797 < 5.5636] w=0.9552 to align # Constraint # added constraint: constraint((T0313)S302.CB, (T0313)T311.CB) [> 3.5875 = 5.9792 < 7.7729] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V301.CB, (T0313)L315.CB) [> 4.1835 = 6.9725 < 9.0642] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V301.CB, (T0313)S314.CB) [> 3.3812 = 5.6354 < 7.3260] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)A318.CB) [> 2.5752 = 4.2920 < 5.5796] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)F317.CB) [> 4.2751 = 7.1252 < 9.2627] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)L315.CB) [> 4.1727 = 6.9546 < 9.0409] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V299.CB, (T0313)S314.CB) [> 3.1923 = 5.3205 < 6.9167] w=0.9552 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)L289.CB) [> 4.4161 = 7.3602 < 9.5682] w=0.9552 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)Q286.CB) [> 2.6157 = 4.3595 < 5.6673] w=0.9552 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)L289.CB) [> 3.8166 = 6.3610 < 8.2693] w=0.9552 to align # Constraint # added constraint: constraint((T0313)A265.CB, (T0313)R320.CB) [> 3.7321 = 6.2202 < 8.0863] w=0.9552 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)V321.CB) [> 3.1289 = 5.2148 < 6.7793] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)L289.CB) [> 3.5921 = 5.9868 < 7.7829] w=0.9552 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)T282.CB) [> 2.9451 = 4.9085 < 6.3810] w=0.9552 to align # Constraint # added constraint: constraint((T0313)Q66.CB, (T0313)L110.CB) [> 3.9609 = 6.6016 < 8.5820] w=0.9476 to align # Constraint # added constraint: constraint((T0313)K50.CB, (T0313)E64.CB) [> 3.7797 = 6.2995 < 8.1893] w=0.9476 to align # Constraint # added constraint: constraint((T0313)K255.CB, (T0313)S279.CB) [> 3.2912 = 5.4854 < 7.1310] w=0.9473 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L296.CB) [> 2.8498 = 4.7496 < 6.1745] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)T295.CB) [> 4.5666 = 7.6111 < 9.8944] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L296.CB) [> 4.2650 = 7.1084 < 9.2409] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)T295.CB) [> 2.7716 = 4.6193 < 6.0051] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)S293.CB) [> 3.8440 = 6.4068 < 8.3288] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)S288.CB) [> 2.7361 = 4.5602 < 5.9283] w=0.9213 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L285.CB) [> 3.8354 = 6.3922 < 8.3099] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)T295.CB) [> 4.3489 = 7.2482 < 9.4227] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)K294.CB) [> 3.0074 = 5.0123 < 6.5160] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)S293.CB) [> 3.8785 = 6.4642 < 8.4034] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)S293.CB) [> 2.6770 = 4.4616 < 5.8001] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)D287.CB) [> 3.8651 = 6.4419 < 8.3745] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)K294.CB) [> 3.6374 = 6.0623 < 7.8810] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)S293.CB) [> 4.0099 = 6.6832 < 8.6881] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)T222.CB) [> 2.7275 = 4.5459 < 5.9096] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S71.CB, (T0313)K294.CB) [> 3.2722 = 5.4536 < 7.0897] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)L296.CB) [> 3.7655 = 6.2759 < 8.1587] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)S314.CB) [> 2.9398 = 4.8997 < 6.3696] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)Q300.CB) [> 2.9706 = 4.9510 < 6.4363] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)V299.CB) [> 3.6361 = 6.0601 < 7.8781] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)F317.CB) [> 4.1778 = 6.9630 < 9.0519] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)S314.CB) [> 4.1174 = 6.8623 < 8.9210] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)Q300.CB) [> 4.1802 = 6.9671 < 9.0572] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)V299.CB) [> 3.0430 = 5.0717 < 6.5931] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)V298.CB) [> 4.1153 = 6.8588 < 8.9164] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)M297.CB) [> 3.5393 = 5.8988 < 7.6684] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)Q300.CB) [> 3.8084 = 6.3473 < 8.2515] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V298.CB) [> 3.0797 = 5.1328 < 6.6727] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)V298.CB) [> 4.0658 = 6.7764 < 8.8094] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)M297.CB) [> 2.9202 = 4.8671 < 6.3272] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L296.CB) [> 4.2965 = 7.1608 < 9.3090] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)T295.CB) [> 4.4843 = 7.4738 < 9.7159] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)V298.CB) [> 4.1393 = 6.8988 < 8.9684] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V301.CB) [> 3.8026 = 6.3376 < 8.2389] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V299.CB) [> 2.9133 = 4.8556 < 6.3123] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)V298.CB) [> 4.6248 = 7.7080 < 10.0204] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V299.CB) [> 4.1384 = 6.8973 < 8.9665] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V298.CB) [> 2.9465 = 4.9108 < 6.3841] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)M297.CB) [> 4.2137 = 7.0227 < 9.1296] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)L296.CB) [> 4.1033 = 6.8389 < 8.8905] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V321.CB) [> 3.3484 = 5.5807 < 7.2549] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)A318.CB) [> 3.0876 = 5.1460 < 6.6898] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V299.CB) [> 4.0173 = 6.6954 < 8.7040] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)M297.CB) [> 2.9288 = 4.8814 < 6.3458] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)M297.CB) [> 4.3390 = 7.2318 < 9.4013] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)L296.CB) [> 2.9497 = 4.9161 < 6.3910] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)T295.CB) [> 4.3976 = 7.3292 < 9.5280] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)V321.CB) [> 3.9603 = 6.6005 < 8.5807] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)M297.CB) [> 4.1327 = 6.8878 < 8.9542] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)T295.CB) [> 2.7354 = 4.5591 < 5.9268] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)K294.CB) [> 3.5755 = 5.9592 < 7.7470] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)A318.CB) [> 3.9226 = 6.5377 < 8.4990] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)E319.CB) [> 3.3708 = 5.6179 < 7.3033] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)A318.CB) [> 4.3132 = 7.1887 < 9.3453] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)L315.CB) [> 2.9606 = 4.9344 < 6.4147] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)S302.CB) [> 3.9086 = 6.5144 < 8.4687] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)V301.CB) [> 4.4367 = 7.3946 < 9.6130] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)Q300.CB) [> 4.0282 = 6.7136 < 8.7277] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V301.CB) [> 3.1327 = 5.2211 < 6.7875] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V301.CB) [> 4.2442 = 7.0736 < 9.1957] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)Q300.CB) [> 3.2128 = 5.3546 < 6.9610] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V299.CB) [> 4.2885 = 7.1476 < 9.2918] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V298.CB) [> 3.5772 = 5.9620 < 7.7506] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)G89.CA) [> 4.4413 = 7.4022 < 9.6228] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)A318.CB) [> 3.7727 = 6.2879 < 8.1742] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)L315.CB) [> 4.1943 = 6.9905 < 9.0877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)G233.CA) [> 4.3512 = 7.2520 < 9.4276] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)A232.CB) [> 3.2469 = 5.4115 < 7.0349] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S201.CB, (T0313)G233.CA) [> 3.3695 = 5.6159 < 7.3007] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S201.CB, (T0313)A232.CB) [> 4.0587 = 6.7644 < 8.7938] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V172.CB, (T0313)V181.CB) [> 4.1123 = 6.8539 < 8.9101] w=0.9213 to align # Constraint # added constraint: constraint((T0313)F170.CB, (T0313)V181.CB) [> 3.6427 = 6.0711 < 7.8924] w=0.9213 to align # Constraint # added constraint: constraint((T0313)V164.CB, (T0313)L284.CB) [> 4.2717 = 7.1194 < 9.2553] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)P165.CB) [> 3.0592 = 5.0986 < 6.6282] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)V164.CB) [> 4.4546 = 7.4243 < 9.6516] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)V164.CB) [> 3.1588 = 5.2646 < 6.8440] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)I152.CB) [> 2.7489 = 4.5815 < 5.9560] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)H204.CB) [> 4.6033 = 7.6721 < 9.9738] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)R202.CB) [> 4.0531 = 6.7551 < 8.7817] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)S314.CB) [> 3.6499 = 6.0832 < 7.9082] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)Y313.CB) [> 4.1310 = 6.8850 < 8.9506] w=0.9213 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)E310.CB) [> 4.3327 = 7.2211 < 9.3874] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)L257.CB) [> 3.8056 = 6.3426 < 8.2454] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)S256.CB) [> 4.3651 = 7.2751 < 9.4577] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L260.CB) [> 4.5503 = 7.5838 < 9.8589] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L257.CB) [> 4.0630 = 6.7717 < 8.8033] w=0.9213 to align # Constraint # added constraint: constraint((T0313)N227.CB, (T0313)S288.CB) [> 3.4144 = 5.6906 < 7.3977] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R212.CB, (T0313)G224.CA) [> 4.5303 = 7.5506 < 9.8157] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)T223.CB) [> 4.0592 = 6.7654 < 8.7950] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I208.CB, (T0313)L228.CB) [> 4.5630 = 7.6049 < 9.8864] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)V229.CB) [> 4.5686 = 7.6144 < 9.8987] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L284.CB) [> 4.2753 = 7.1255 < 9.2631] w=0.9213 to align # Constraint # added constraint: constraint((T0313)H204.CB, (T0313)L281.CB) [> 3.4097 = 5.6828 < 7.3877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)D230.CB) [> 4.3016 = 7.1694 < 9.3202] w=0.9213 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)V229.CB) [> 4.6698 = 7.7831 < 10.1180] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)Q300.CB) [> 3.7044 = 6.1741 < 8.0263] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T93.CB, (T0313)V298.CB) [> 3.4968 = 5.8279 < 7.5763] w=0.9213 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)Q300.CB) [> 3.1097 = 5.1829 < 6.7378] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G89.CA, (T0313)Q300.CB) [> 2.5884 = 4.3140 < 5.6082] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)S302.CB) [> 3.0635 = 5.1059 < 6.6376] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)V301.CB) [> 3.3208 = 5.5347 < 7.1951] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)Q300.CB) [> 2.2676 = 3.7793 < 4.9131] w=0.9213 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)S302.CB) [> 4.1182 = 6.8637 < 8.9228] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)G233.CA) [> 2.8676 = 4.7793 < 6.2131] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)S314.CB) [> 3.7625 = 6.2708 < 8.1521] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)E310.CB) [> 2.5693 = 4.2821 < 5.5668] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)S302.CB) [> 3.9952 = 6.6586 < 8.6562] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)L281.CB) [> 3.3907 = 5.6511 < 7.3464] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)K280.CB) [> 3.4057 = 5.6761 < 7.3790] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)S256.CB) [> 3.9550 = 6.5917 < 8.5693] w=0.9213 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)L206.CB) [> 4.4468 = 7.4114 < 9.6348] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)V164.CB) [> 4.0000 = 6.6667 < 8.6667] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)A205.CB) [> 4.4390 = 7.3983 < 9.6178] w=0.9213 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)G185.CA) [> 3.4014 = 5.6689 < 7.3696] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)V209.CB) [> 4.4450 = 7.4084 < 9.6309] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)R212.CB) [> 4.5475 = 7.5791 < 9.8528] w=0.9213 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)V211.CB) [> 4.5123 = 7.5205 < 9.7766] w=0.9213 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)D215.CB) [> 3.2357 = 5.3928 < 7.0107] w=0.9213 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)G213.CA) [> 3.6496 = 6.0826 < 7.9074] w=0.9213 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)V211.CB) [> 4.0559 = 6.7598 < 8.7877] w=0.9213 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)N179.CB) [> 4.1076 = 6.8460 < 8.8999] w=0.9213 to align # Constraint # added constraint: constraint((T0313)I103.CB, (T0313)L228.CB) [> 3.8600 = 6.4333 < 8.3632] w=0.9213 to align # Constraint # added constraint: constraint((T0313)R268.CB, (T0313)V321.CB) [> 4.0812 = 6.8020 < 8.8427] w=0.9028 to align # Constraint # added constraint: constraint((T0313)G96.CA, (T0313)Q105.CB) [> 4.4659 = 7.4431 < 9.6761] w=0.8951 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)G96.CA) [> 4.0486 = 6.7477 < 8.7720] w=0.8951 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)F46.CB) [> 3.5967 = 5.9945 < 7.7929] w=0.8951 to align # Constraint # added constraint: constraint((T0313)M297.CB, (T0313)V321.CB) [> 3.5366 = 5.8943 < 7.6625] w=0.8765 to align # Constraint # added constraint: constraint((T0313)A266.CB, (T0313)P275.CB) [> 4.1256 = 6.8760 < 8.9388] w=0.8765 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)V274.CB) [> 3.3387 = 5.5645 < 7.2339] w=0.8765 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)E47.CB) [> 3.3023 = 5.5038 < 7.1550] w=0.8689 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)V51.CB) [> 3.6371 = 6.0619 < 7.8804] w=0.8689 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)S45.CB) [> 4.0330 = 6.7217 < 8.7381] w=0.8689 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)F46.CB) [> 4.0854 = 6.8091 < 8.8518] w=0.8689 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)Y163.CB) [> 4.4095 = 7.3492 < 9.5540] w=0.8689 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)L226.CB) [> 4.5224 = 7.5373 < 9.7985] w=0.8654 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)M94.CB) [> 4.5860 = 7.6434 < 9.9364] w=0.8427 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)K294.CB) [> 4.4580 = 7.4300 < 9.6590] w=0.8427 to align # Constraint # added constraint: constraint((T0313)N77.CB, (T0313)S288.CB) [> 3.1390 = 5.2317 < 6.8012] w=0.8427 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)V211.CB) [> 4.0191 = 6.6985 < 8.7081] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)P101.CB) [> 3.4345 = 5.7242 < 7.4415] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V44.CB, (T0313)L315.CB) [> 4.4653 = 7.4421 < 9.6747] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V44.CB, (T0313)L312.CB) [> 3.9123 = 6.5204 < 8.4765] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)V304.CB) [> 4.0527 = 6.7545 < 8.7809] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)P303.CB) [> 3.5883 = 5.9805 < 7.7746] w=0.8427 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)P303.CB) [> 4.3143 = 7.1905 < 9.3477] w=0.8427 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)P303.CB) [> 4.0338 = 6.7231 < 8.7400] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)P303.CB) [> 3.2092 = 5.3486 < 6.9532] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V211.CB, (T0313)L226.CB) [> 4.2440 = 7.0733 < 9.1953] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)L284.CB) [> 3.4720 = 5.7866 < 7.5226] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)R189.CB) [> 3.5621 = 5.9368 < 7.7178] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)N188.CB) [> 2.9898 = 4.9830 < 6.4778] w=0.8427 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)L167.CB) [> 4.4865 = 7.4774 < 9.7207] w=0.8427 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)S256.CB) [> 4.1768 = 6.9614 < 9.0498] w=0.8427 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)R189.CB) [> 3.9521 = 6.5868 < 8.5628] w=0.8427 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)A205.CB) [> 4.5233 = 7.5389 < 9.8006] w=0.8427 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)V181.CB) [> 4.0262 = 6.7103 < 8.7234] w=0.8427 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)I178.CB) [> 3.9140 = 6.5233 < 8.4803] w=0.8427 to align # Constraint # added constraint: constraint((T0313)T127.CB, (T0313)R212.CB) [> 4.4365 = 7.3941 < 9.6123] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)F182.CB) [> 4.2079 = 7.0131 < 9.1170] w=0.8427 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)S201.CB) [> 2.7093 = 4.5155 < 5.8701] w=0.8427 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)V301.CB) [> 4.6094 = 7.6823 < 9.9870] w=0.8427 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)M297.CB) [> 4.6390 = 7.7317 < 10.0512] w=0.8427 to align # Constraint # added constraint: constraint((T0313)M297.CB, (T0313)A318.CB) [> 3.9337 = 6.5561 < 8.5230] w=0.8206 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)L48.CB) [> 4.4799 = 7.4666 < 9.7065] w=0.8164 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)S45.CB) [> 3.4689 = 5.7815 < 7.5159] w=0.8164 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)V214.CB) [> 4.3848 = 7.3080 < 9.5004] w=0.8164 to align # Constraint # added constraint: constraint((T0313)R212.CB, (T0313)R221.CB) [> 4.1378 = 6.8964 < 8.9653] w=0.8164 to align # Constraint # added constraint: constraint((T0313)D30.CB, (T0313)E47.CB) [> 3.6537 = 6.0895 < 7.9164] w=0.8053 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)I34.CB) [> 3.9173 = 6.5288 < 8.4875] w=0.8053 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)I35.CB) [> 3.4507 = 5.7512 < 7.4765] w=0.7978 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)E20.CB) [> 3.7039 = 6.1732 < 8.0252] w=0.7978 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)L48.CB) [> 4.1602 = 6.9337 < 9.0139] w=0.7902 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)L296.CB) [> 4.2687 = 7.1144 < 9.2488] w=0.7867 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)L296.CB) [> 4.5171 = 7.5285 < 9.7871] w=0.7867 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L226.CB) [> 4.4803 = 7.4672 < 9.7073] w=0.7867 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)F182.CB) [> 4.3772 = 7.2953 < 9.4839] w=0.7867 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V209.CB) [> 4.3915 = 7.3192 < 9.5150] w=0.7867 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)S200.CB) [> 3.9689 = 6.6148 < 8.5993] w=0.7867 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)S33.CB) [> 4.1469 = 6.9115 < 8.9850] w=0.7791 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)I152.CB) [> 4.4176 = 7.3626 < 9.5714] w=0.7791 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)L154.CB) [> 4.0661 = 6.7768 < 8.8098] w=0.7791 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)I152.CB) [> 3.7568 = 6.2614 < 8.1398] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)P165.CB) [> 3.6756 = 6.1261 < 7.9639] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)G166.CA) [> 3.6281 = 6.0468 < 7.8608] w=0.7791 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)L167.CB) [> 3.4908 = 5.8180 < 7.5634] w=0.7791 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)V164.CB) [> 3.4496 = 5.7494 < 7.4742] w=0.7791 to align # Constraint # added constraint: constraint((T0313)G75.CA, (T0313)V211.CB) [> 4.5746 = 7.6244 < 9.9117] w=0.7640 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)K225.CB) [> 4.1673 = 6.9455 < 9.0292] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V61.CB, (T0313)G102.CA) [> 4.5428 = 7.5713 < 9.8427] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)I34.CB) [> 3.9228 = 6.5380 < 8.4994] w=0.7640 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)P54.CB) [> 2.4540 = 4.0900 < 5.3170] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)P54.CB) [> 3.7824 = 6.3039 < 8.1951] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)S53.CB) [> 3.4551 = 5.7585 < 7.4861] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R7.CB, (T0313)V51.CB) [> 4.6797 = 7.7995 < 10.1393] w=0.7640 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)K50.CB) [> 4.5473 = 7.5789 < 9.8526] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V229.CB, (T0313)L285.CB) [> 4.3899 = 7.3166 < 9.5115] w=0.7640 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L285.CB) [> 4.5337 = 7.5561 < 9.8230] w=0.7640 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)D230.CB) [> 4.6266 = 7.7109 < 10.0242] w=0.7640 to align # Constraint # added constraint: constraint((T0313)G143.CA, (T0313)N188.CB) [> 4.2598 = 7.0996 < 9.2295] w=0.7640 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)S279.CB) [> 4.1556 = 6.9259 < 9.0037] w=0.7640 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)Q300.CB) [> 4.5697 = 7.6162 < 9.9010] w=0.7640 to align # Constraint # added constraint: constraint((T0313)Q85.CB, (T0313)E235.CB) [> 2.6249 = 4.3748 < 5.6872] w=0.7640 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)L296.CB) [> 4.5795 = 7.6325 < 9.9223] w=0.7640 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)P303.CB) [> 4.0579 = 6.7632 < 8.7922] w=0.7529 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)T22.CB) [> 4.1952 = 6.9921 < 9.0897] w=0.7529 to align # Constraint # added constraint: constraint((T0313)E123.CB, (T0313)C216.CB) [> 4.2587 = 7.0979 < 9.2272] w=0.7378 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)P165.CB) [> 4.5421 = 7.5701 < 9.8412] w=0.7342 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)I152.CB) [> 4.2504 = 7.0840 < 9.2091] w=0.7267 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)A24.CB) [> 3.1677 = 5.2795 < 6.8633] w=0.7267 to align # Constraint # added constraint: constraint((T0313)V263.CB, (T0313)N278.CB) [> 4.5039 = 7.5064 < 9.7584] w=0.7192 to align # Constraint # added constraint: constraint((T0313)S256.CB, (T0313)T282.CB) [> 4.1776 = 6.9626 < 9.0514] w=0.7192 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)F317.CB) [> 4.1599 = 6.9331 < 9.0130] w=0.7080 to align # Constraint # added constraint: constraint((T0313)T210.CB, (T0313)L226.CB) [> 4.6501 = 7.7502 < 10.0752] w=0.7080 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)D230.CB) [> 4.5811 = 7.6351 < 9.9257] w=0.7080 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)S200.CB) [> 4.5246 = 7.5410 < 9.8033] w=0.7080 to align # Constraint # added constraint: constraint((T0313)F62.CB, (T0313)A107.CB) [> 4.4281 = 7.3801 < 9.5942] w=0.7080 to align # Constraint # added constraint: constraint((T0313)A6.CB, (T0313)Q300.CB) [> 4.6883 = 7.8138 < 10.1580] w=0.7080 to align # Constraint # added constraint: constraint((T0313)C155.CB, (T0313)P165.CB) [> 3.3910 = 5.6517 < 7.3472] w=0.7005 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)L284.CB) [> 3.7738 = 6.2897 < 8.1766] w=0.7005 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)Y283.CB) [> 3.8063 = 6.3438 < 8.2469] w=0.7005 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)V51.CB) [> 3.3400 = 5.5666 < 7.2365] w=0.7005 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)F46.CB) [> 4.5233 = 7.5388 < 9.8004] w=0.6929 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)S302.CB) [> 4.5009 = 7.5015 < 9.7519] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)V299.CB) [> 4.6841 = 7.8068 < 10.1488] w=0.6853 to align # Constraint # added constraint: constraint((T0313)V69.CB, (T0313)E114.CB) [> 4.3647 = 7.2745 < 9.4569] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)L111.CB) [> 4.3696 = 7.2827 < 9.4675] w=0.6853 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)D292.CB) [> 3.8306 = 6.3843 < 8.2997] w=0.6853 to align # Constraint # added constraint: constraint((T0313)V78.CB, (T0313)G224.CA) [> 4.6172 = 7.6953 < 10.0039] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I80.CB, (T0313)L226.CB) [> 4.4781 = 7.4634 < 9.7025] w=0.6853 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)A205.CB) [> 4.7169 = 7.8616 < 10.2200] w=0.6853 to align # Constraint # added constraint: constraint((T0313)A107.CB, (T0313)V209.CB) [> 4.2791 = 7.1318 < 9.2714] w=0.6853 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)V164.CB) [> 4.4461 = 7.4102 < 9.6333] w=0.6853 to align # Constraint # added constraint: constraint((T0313)S129.CB, (T0313)T210.CB) [> 4.7179 = 7.8632 < 10.2222] w=0.6853 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)F182.CB) [> 4.3366 = 7.2277 < 9.3960] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)F184.CB) [> 4.5946 = 7.6577 < 9.9550] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)Y283.CB) [> 3.5805 = 5.9675 < 7.7577] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)Q286.CB) [> 3.8565 = 6.4276 < 8.3558] w=0.6853 to align # Constraint # added constraint: constraint((T0313)L162.CB, (T0313)D287.CB) [> 3.8188 = 6.3647 < 8.2741] w=0.6853 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)L289.CB) [> 4.4033 = 7.3388 < 9.5404] w=0.6632 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)L296.CB) [> 3.7450 = 6.2416 < 8.1141] w=0.6591 to align # Constraint # added constraint: constraint((T0313)V65.CB, (T0313)A107.CB) [> 3.8011 = 6.3351 < 8.2357] w=0.6591 to align # Constraint # added constraint: constraint((T0313)L154.CB, (T0313)K280.CB) [> 3.5855 = 5.9758 < 7.7685] w=0.6480 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)T311.CB) [> 4.6162 = 7.6937 < 10.0019] w=0.6480 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)T308.CB) [> 3.7213 = 6.2021 < 8.0627] w=0.6480 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)P303.CB) [> 2.7745 = 4.6242 < 6.0114] w=0.6404 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)V304.CB) [> 4.3627 = 7.2712 < 9.4525] w=0.6404 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)R322.CB) [> 3.0311 = 5.0518 < 6.5674] w=0.6294 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)T311.CB) [> 4.3169 = 7.1949 < 9.3534] w=0.6294 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L228.CB) [> 4.6055 = 7.6758 < 9.9786] w=0.6294 to align # Constraint # added constraint: constraint((T0313)K90.CB, (T0313)V298.CB) [> 4.6773 = 7.7954 < 10.1341] w=0.6294 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)I126.CB) [> 4.5800 = 7.6333 < 9.9233] w=0.6294 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)I208.CB) [> 4.5173 = 7.5288 < 9.7874] w=0.6294 to align # Constraint # added constraint: constraint((T0313)S258.CB, (T0313)S279.CB) [> 4.6406 = 7.7344 < 10.0547] w=0.6145 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)I264.CB) [> 3.8351 = 6.3919 < 8.3094] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)L267.CB) [> 3.7791 = 6.2985 < 8.1880] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V61.CB) [> 4.5814 = 7.6357 < 9.9265] w=0.6067 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)V304.CB) [> 4.4641 = 7.4402 < 9.6723] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)V44.CB) [> 3.7179 = 6.1964 < 8.0554] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)V115.CB) [> 4.5077 = 7.5128 < 9.7666] w=0.6067 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)Q300.CB) [> 4.6332 = 7.7221 < 10.0387] w=0.6067 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)N179.CB) [> 3.9372 = 6.5621 < 8.5307] w=0.6067 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)I126.CB) [> 4.4819 = 7.4699 < 9.7108] w=0.6067 to align # Constraint # added constraint: constraint((T0313)I133.CB, (T0313)A205.CB) [> 4.6872 = 7.8119 < 10.1555] w=0.6067 to align # Constraint # added constraint: constraint((T0313)F182.CB, (T0313)L207.CB) [> 4.2792 = 7.1320 < 9.2716] w=0.6067 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)A205.CB) [> 4.1044 = 6.8407 < 8.8928] w=0.6067 to align # Constraint # added constraint: constraint((T0313)G233.CA, (T0313)L257.CB) [> 4.4466 = 7.4110 < 9.6343] w=0.6067 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)V301.CB) [> 3.8982 = 6.4970 < 8.4461] w=0.6031 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)R322.CB) [> 4.0656 = 6.7760 < 8.8088] w=0.6031 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)H36.CB) [> 3.5365 = 5.8942 < 7.6624] w=0.5956 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)V304.CB) [> 4.4358 = 7.3931 < 9.6110] w=0.5956 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)P303.CB) [> 2.8970 = 4.8284 < 6.2769] w=0.5956 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)R153.CB) [> 4.5413 = 7.5688 < 9.8394] w=0.5956 to align # Constraint # added constraint: constraint((T0313)V274.CB, (T0313)S290.CB) [> 4.0907 = 6.8179 < 8.8632] w=0.5846 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)K294.CB) [> 4.6064 = 7.6774 < 9.9806] w=0.5804 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)V44.CB) [> 3.9751 = 6.6251 < 8.6127] w=0.5693 to align # Constraint # added constraint: constraint((T0313)D31.CB, (T0313)F46.CB) [> 3.9926 = 6.6543 < 8.6506] w=0.5693 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)I34.CB) [> 3.4518 = 5.7531 < 7.4790] w=0.5693 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)T308.CB) [> 3.8255 = 6.3759 < 8.2886] w=0.5618 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)I35.CB) [> 4.1667 = 6.9446 < 9.0280] w=0.5542 to align # Constraint # added constraint: constraint((T0313)R189.CB, (T0313)H199.CB) [> 4.2321 = 7.0535 < 9.1695] w=0.5507 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)H186.CB) [> 4.7000 = 7.8333 < 10.1833] w=0.5507 to align # Constraint # added constraint: constraint((T0313)E136.CB, (T0313)H252.CB) [> 3.4179 = 5.6965 < 7.4054] w=0.5507 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)H252.CB) [> 3.3242 = 5.5403 < 7.2024] w=0.5507 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)L142.CB) [> 4.4400 = 7.4001 < 9.6201] w=0.5507 to align # Constraint # added constraint: constraint((T0313)C155.CB, (T0313)V164.CB) [> 4.5915 = 7.6525 < 9.9483] w=0.5431 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)I35.CB) [> 3.8714 = 6.4524 < 8.3882] w=0.5431 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V51.CB) [> 4.4500 = 7.4167 < 9.6417] w=0.5280 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)Q55.CB) [> 4.2998 = 7.1664 < 9.3163] w=0.5280 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)V51.CB) [> 3.9715 = 6.6191 < 8.6048] w=0.5280 to align # Constraint # added constraint: constraint((T0313)T70.CB, (T0313)E114.CB) [> 4.1681 = 6.9469 < 9.0310] w=0.5280 to align # Constraint # added constraint: constraint((T0313)C72.CB, (T0313)V209.CB) [> 4.5548 = 7.5913 < 9.8687] w=0.5280 to align # Constraint # added constraint: constraint((T0313)C79.CB, (T0313)L289.CB) [> 3.7058 = 6.1763 < 8.0292] w=0.5280 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L260.CB) [> 4.5568 = 7.5946 < 9.8730] w=0.5280 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)E235.CB) [> 4.6900 = 7.8167 < 10.1618] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)I178.CB) [> 4.4264 = 7.3774 < 9.5906] w=0.5280 to align # Constraint # added constraint: constraint((T0313)L142.CB, (T0313)L167.CB) [> 4.6576 = 7.7627 < 10.0915] w=0.5280 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)I253.CB) [> 3.8535 = 6.4225 < 8.3492] w=0.5280 to align # Constraint # added constraint: constraint((T0313)V209.CB, (T0313)N227.CB) [> 4.7040 = 7.8400 < 10.1920] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)T295.CB) [> 4.2295 = 7.0491 < 9.1638] w=0.5280 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)M297.CB) [> 4.2018 = 7.0030 < 9.1039] w=0.5280 to align # Constraint # added constraint: constraint((T0313)D49.CB, (T0313)R322.CB) [> 4.4917 = 7.4862 < 9.7320] w=0.5245 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)T308.CB) [> 3.6464 = 6.0773 < 7.9005] w=0.5169 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)S53.CB) [> 2.9828 = 4.9714 < 6.4628] w=0.5169 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)D32.CB) [> 4.4867 = 7.4779 < 9.7213] w=0.4907 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)E305.CB) [> 4.3907 = 7.3179 < 9.5133] w=0.4831 to align # Constraint # added constraint: constraint((T0313)L48.CB, (T0313)R322.CB) [> 4.2027 = 7.0044 < 9.1058] w=0.4720 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)L207.CB) [> 4.6135 = 7.6891 < 9.9958] w=0.4720 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)V172.CB) [> 4.1553 = 6.9255 < 9.0031] w=0.4720 to align # Constraint # added constraint: constraint((T0313)L257.CB, (T0313)F317.CB) [> 4.6089 = 7.6815 < 9.9860] w=0.4720 to align # Constraint # added constraint: constraint((T0313)G261.CA, (T0313)R320.CB) [> 3.8699 = 6.4499 < 8.3849] w=0.4720 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)L312.CB) [> 3.7745 = 6.2909 < 8.1781] w=0.4644 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)L315.CB) [> 4.0562 = 6.7604 < 8.7885] w=0.4644 to align # Constraint # added constraint: constraint((T0313)F112.CB, (T0313)I178.CB) [> 4.4587 = 7.4311 < 9.6605] w=0.4493 to align # Constraint # added constraint: constraint((T0313)L206.CB, (T0313)L281.CB) [> 4.5359 = 7.5599 < 9.8279] w=0.4493 to align # Constraint # added constraint: constraint((T0313)V229.CB, (T0313)L281.CB) [> 4.6194 = 7.6990 < 10.0087] w=0.4493 to align # Constraint # added constraint: constraint((T0313)V274.CB, (T0313)L289.CB) [> 4.2344 = 7.0573 < 9.1745] w=0.4493 to align # Constraint # added constraint: constraint((T0313)W122.CB, (T0313)C216.CB) [> 4.2933 = 7.1555 < 9.3021] w=0.4458 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)T26.CB) [> 3.6755 = 6.1259 < 7.9636] w=0.4458 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)S45.CB) [> 3.2303 = 5.3838 < 6.9989] w=0.4307 to align # Constraint # added constraint: constraint((T0313)N1.CB, (T0313)T295.CB) [> 4.0906 = 6.8177 < 8.8631] w=0.4307 to align # Constraint # added constraint: constraint((T0313)I264.CB, (T0313)R320.CB) [> 3.4402 = 5.7336 < 7.4537] w=0.4272 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)E47.CB) [> 3.3705 = 5.6175 < 7.3027] w=0.4231 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)L312.CB) [> 4.1365 = 6.8942 < 8.9624] w=0.4044 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)L48.CB) [> 4.1260 = 6.8767 < 8.9397] w=0.4044 to align # Constraint # added constraint: constraint((T0313)Y83.CB, (T0313)L257.CB) [> 4.5883 = 7.6472 < 9.9414] w=0.3933 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)M297.CB) [> 4.7083 = 7.8472 < 10.2014] w=0.3933 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)V304.CB) [> 4.6233 = 7.7056 < 10.0172] w=0.3933 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)S302.CB) [> 4.5989 = 7.6649 < 9.9643] w=0.3933 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)Q300.CB) [> 4.7041 = 7.8401 < 10.1921] w=0.3933 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)V298.CB) [> 4.7392 = 7.8986 < 10.2682] w=0.3933 to align # Constraint # added constraint: constraint((T0313)A232.CB, (T0313)I253.CB) [> 2.9054 = 4.8423 < 6.2950] w=0.3933 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)E249.CB) [> 3.3124 = 5.5207 < 7.1769] w=0.3933 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)E249.CB) [> 3.5945 = 5.9908 < 7.7881] w=0.3933 to align # Constraint # added constraint: constraint((T0313)I103.CB, (T0313)V298.CB) [> 4.6658 = 7.7764 < 10.1093] w=0.3933 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)E151.CB) [> 3.7274 = 6.2123 < 8.0760] w=0.3782 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)L37.CB) [> 3.9262 = 6.5436 < 8.5067] w=0.3782 to align # Constraint # added constraint: constraint((T0313)F46.CB, (T0313)K316.CB) [> 4.6988 = 7.8313 < 10.1806] w=0.3706 to align # Constraint # added constraint: constraint((T0313)Q66.CB, (T0313)R106.CB) [> 4.6448 = 7.7414 < 10.0638] w=0.3706 to align # Constraint # added constraint: constraint((T0313)I73.CB, (T0313)G224.CA) [> 4.4214 = 7.3690 < 9.5798] w=0.3706 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)R202.CB) [> 4.5216 = 7.5359 < 9.7967] w=0.3706 to align # Constraint # added constraint: constraint((T0313)V172.CB, (T0313)V209.CB) [> 4.6913 = 7.8188 < 10.1644] w=0.3706 to align # Constraint # added constraint: constraint((T0313)R202.CB, (T0313)N254.CB) [> 4.1643 = 6.9405 < 9.0227] w=0.3706 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)T295.CB) [> 4.2649 = 7.1082 < 9.2406] w=0.3706 to align # Constraint # added constraint: constraint((T0313)E64.CB, (T0313)L296.CB) [> 3.6439 = 6.0732 < 7.8951] w=0.3444 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)E151.CB) [> 4.0475 = 6.7458 < 8.7696] w=0.3409 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)E151.CB) [> 2.8533 = 4.7556 < 6.1822] w=0.3409 to align # Constraint # added constraint: constraint((T0313)I5.CB, (T0313)V65.CB) [> 3.3679 = 5.6131 < 7.2970] w=0.3409 to align # Constraint # added constraint: constraint((T0313)A29.CB, (T0313)K50.CB) [> 3.8302 = 6.3837 < 8.2988] w=0.3333 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)S288.CB) [> 4.7412 = 7.9020 < 10.2726] w=0.3147 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)F52.CB) [> 4.2248 = 7.0413 < 9.1538] w=0.3147 to align # Constraint # added constraint: constraint((T0313)T12.CB, (T0313)G87.CA) [> 4.3130 = 7.1883 < 9.3447] w=0.3147 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)V65.CB) [> 4.3210 = 7.2016 < 9.3621] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y163.CB, (T0313)L284.CB) [> 4.6566 = 7.7610 < 10.0893] w=0.3147 to align # Constraint # added constraint: constraint((T0313)D140.CB, (T0313)V164.CB) [> 4.7395 = 7.8992 < 10.2689] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)L196.CB) [> 4.0197 = 6.6995 < 8.7093] w=0.3147 to align # Constraint # added constraint: constraint((T0313)I126.CB, (T0313)Q173.CB) [> 4.5901 = 7.6501 < 9.9452] w=0.3147 to align # Constraint # added constraint: constraint((T0313)L111.CB, (T0313)Y124.CB) [> 4.7345 = 7.8909 < 10.2581] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Q105.CB, (T0313)I178.CB) [> 3.8066 = 6.3444 < 8.2477] w=0.3147 to align # Constraint # added constraint: constraint((T0313)M94.CB, (T0313)V298.CB) [> 4.6603 = 7.7672 < 10.0974] w=0.3147 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)Q300.CB) [> 4.7193 = 7.8654 < 10.2251] w=0.3147 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)L37.CB) [> 3.7898 = 6.3163 < 8.2111] w=0.2995 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)T311.CB) [> 3.7527 = 6.2544 < 8.1308] w=0.2995 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)H36.CB) [> 3.7307 = 6.2179 < 8.0833] w=0.2809 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)V25.CB) [> 4.0802 = 6.8003 < 8.8404] w=0.2733 to align # Constraint # added constraint: constraint((T0313)D262.CB, (T0313)V274.CB) [> 4.6409 = 7.7348 < 10.0552] w=0.2620 to align # Constraint # added constraint: constraint((T0313)A259.CB, (T0313)F276.CB) [> 4.7568 = 7.9280 < 10.3064] w=0.2620 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)I35.CB) [> 4.4148 = 7.3580 < 9.5653] w=0.2471 to align # Constraint # added constraint: constraint((T0313)F276.CB, (T0313)L285.CB) [> 4.5409 = 7.5681 < 9.8386] w=0.2393 to align # Constraint # added constraint: constraint((T0313)G84.CA, (T0313)F317.CB) [> 4.7609 = 7.9349 < 10.3154] w=0.2360 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)V299.CB) [> 4.7870 = 7.9784 < 10.3719] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)D230.CB) [> 4.4877 = 7.4796 < 9.7234] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L228.CB) [> 4.6185 = 7.6976 < 10.0068] w=0.2360 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)N227.CB) [> 4.6095 = 7.6825 < 9.9873] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L68.CB, (T0313)C79.CB) [> 4.7338 = 7.8896 < 10.2565] w=0.2360 to align # Constraint # added constraint: constraint((T0313)Q58.CB, (T0313)Y92.CB) [> 4.6102 = 7.6838 < 9.9889] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R9.CB, (T0313)G87.CA) [> 4.6588 = 7.7646 < 10.0940] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V4.CB, (T0313)K50.CB) [> 4.5070 = 7.5117 < 9.7652] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)G291.CA) [> 3.9904 = 6.6506 < 8.6458] w=0.2360 to align # Constraint # added constraint: constraint((T0313)K239.CB, (T0313)A250.CB) [> 2.8977 = 4.8295 < 6.2783] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)A250.CB) [> 3.0789 = 5.1315 < 6.6710] w=0.2360 to align # Constraint # added constraint: constraint((T0313)E235.CB, (T0313)Y313.CB) [> 4.6481 = 7.7469 < 10.0709] w=0.2360 to align # Constraint # added constraint: constraint((T0313)L231.CB, (T0313)L281.CB) [> 4.7567 = 7.9279 < 10.3063] w=0.2360 to align # Constraint # added constraint: constraint((T0313)T190.CB, (T0313)S200.CB) [> 2.9853 = 4.9755 < 6.4681] w=0.2360 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)V211.CB) [> 4.5112 = 7.5186 < 9.7742] w=0.2360 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L142.CB) [> 4.7062 = 7.8437 < 10.1968] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)E192.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.2360 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)G166.CA) [> 4.6736 = 7.7893 < 10.1261] w=0.2360 to align # Constraint # added constraint: constraint((T0313)E169.CB, (T0313)I208.CB) [> 4.6882 = 7.8136 < 10.1577] w=0.2360 to align # Constraint # added constraint: constraint((T0313)D74.CB, (T0313)G224.CA) [> 4.7158 = 7.8597 < 10.2176] w=0.2133 to align # Constraint # added constraint: constraint((T0313)A130.CB, (T0313)F184.CB) [> 4.6737 = 7.7895 < 10.1264] w=0.2133 to align # Constraint # added constraint: constraint((T0313)N135.CB, (T0313)I253.CB) [> 3.1897 = 5.3162 < 6.9110] w=0.2133 to align # Constraint # added constraint: constraint((T0313)K255.CB, (T0313)K280.CB) [> 4.6905 = 7.8176 < 10.1628] w=0.2133 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)L312.CB) [> 4.2278 = 7.0464 < 9.1603] w=0.2098 to align # Constraint # added constraint: constraint((T0313)L38.CB, (T0313)T308.CB) [> 4.4439 = 7.4065 < 9.6285] w=0.2098 to align # Constraint # added constraint: constraint((T0313)A21.CB, (T0313)H36.CB) [> 3.5505 = 5.9176 < 7.6929] w=0.2022 to align # Constraint # added constraint: constraint((T0313)E151.CB, (T0313)P165.CB) [> 3.2659 = 5.4432 < 7.0761] w=0.1947 to align # Constraint # added constraint: constraint((T0313)N1.CB, (T0313)G291.CA) [> 4.2439 = 7.0732 < 9.1952] w=0.1947 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)H36.CB) [> 4.7168 = 7.8613 < 10.2197] w=0.1836 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)E47.CB) [> 4.0260 = 6.7101 < 8.7231] w=0.1836 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)I253.CB) [> 3.0432 = 5.0719 < 6.5935] w=0.1836 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)L37.CB) [> 4.4728 = 7.4546 < 9.6910] w=0.1760 to align # Constraint # added constraint: constraint((T0313)T22.CB, (T0313)I35.CB) [> 3.1443 = 5.2404 < 6.8126] w=0.1684 to align # Constraint # added constraint: constraint((T0313)F81.CB, (T0313)L285.CB) [> 4.5712 = 7.6188 < 9.9044] w=0.1573 to align # Constraint # added constraint: constraint((T0313)A82.CB, (T0313)I103.CB) [> 4.7033 = 7.8388 < 10.1904] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)R236.CB) [> 4.2948 = 7.1581 < 9.3055] w=0.1573 to align # Constraint # added constraint: constraint((T0313)G87.CA, (T0313)G233.CA) [> 4.3384 = 7.2307 < 9.3999] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)A205.CB) [> 4.7433 = 7.9056 < 10.2772] w=0.1573 to align # Constraint # added constraint: constraint((T0313)N104.CB, (T0313)I178.CB) [> 4.3784 = 7.2973 < 9.4865] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V115.CB, (T0313)G213.CA) [> 4.5826 = 7.6376 < 9.9289] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)T210.CB) [> 4.7052 = 7.8420 < 10.1946] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)V51.CB) [> 3.1168 = 5.1946 < 6.7530] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)N23.CB) [> 4.0493 = 6.7488 < 8.7735] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R3.CB, (T0313)L68.CB) [> 4.7636 = 7.9393 < 10.3211] w=0.1573 to align # Constraint # added constraint: constraint((T0313)G238.CA, (T0313)A250.CB) [> 3.7579 = 6.2631 < 8.1421] w=0.1573 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)N254.CB) [> 3.5728 = 5.9547 < 7.7411] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)A250.CB) [> 3.6879 = 6.1465 < 7.9905] w=0.1573 to align # Constraint # added constraint: constraint((T0313)R236.CB, (T0313)E249.CB) [> 4.0173 = 6.6955 < 8.7041] w=0.1573 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L284.CB) [> 4.3966 = 7.3277 < 9.5260] w=0.1573 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)E249.CB) [> 4.3632 = 7.2720 < 9.4536] w=0.1573 to align # Constraint # added constraint: constraint((T0313)K144.CB, (T0313)T191.CB) [> 3.0369 = 5.0616 < 6.5800] w=0.1573 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)H36.CB) [> 4.4431 = 7.4051 < 9.6266] w=0.1422 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L150.CB) [> 4.5942 = 7.6569 < 9.9540] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)V164.CB) [> 3.1806 = 5.3010 < 6.8913] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)P165.CB) [> 3.5178 = 5.8630 < 7.6220] w=0.1422 to align # Constraint # added constraint: constraint((T0313)L150.CB, (T0313)L167.CB) [> 3.5374 = 5.8956 < 7.6643] w=0.1422 to align # Constraint # added constraint: constraint((T0313)I152.CB, (T0313)L162.CB) [> 3.6361 = 6.0602 < 7.8783] w=0.1422 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)L162.CB) [> 4.2477 = 7.0794 < 9.2032] w=0.1422 to align # Constraint # added constraint: constraint((T0313)R153.CB, (T0313)Y163.CB) [> 3.1643 = 5.2738 < 6.8560] w=0.1422 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)N197.CB) [> 4.4714 = 7.4523 < 9.6880] w=0.1346 to align # Constraint # added constraint: constraint((T0313)V128.CB, (T0313)Q171.CB) [> 4.4548 = 7.4247 < 9.6522] w=0.1346 to align # Constraint # added constraint: constraint((T0313)R277.CB, (T0313)Q286.CB) [> 4.5812 = 7.6354 < 9.9260] w=0.1346 to align # Constraint # added constraint: constraint((T0313)Q161.CB, (T0313)T223.CB) [> 4.6063 = 7.6771 < 9.9803] w=0.1311 to align # Constraint # added constraint: constraint((T0313)V8.CB, (T0313)F27.CB) [> 4.1876 = 6.9793 < 9.0731] w=0.1049 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)L37.CB) [> 4.4494 = 7.4157 < 9.6405] w=0.1049 to align # Constraint # added constraint: constraint((T0313)S33.CB, (T0313)D49.CB) [> 4.1665 = 6.9442 < 9.0275] w=0.1049 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)E47.CB) [> 3.7902 = 6.3170 < 8.2121] w=0.1049 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)L312.CB) [> 4.4714 = 7.4523 < 9.6879] w=0.1049 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)Q251.CB) [> 4.7355 = 7.8925 < 10.2602] w=0.1049 to align # Constraint # added constraint: constraint((T0313)A24.CB, (T0313)L38.CB) [> 4.1494 = 6.9157 < 8.9904] w=0.0973 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)P303.CB) [> 3.9113 = 6.5188 < 8.4745] w=0.0898 to align # Constraint # added constraint: constraint((T0313)E132.CB, (T0313)F193.CB) [> 3.7270 = 6.2116 < 8.0751] w=0.0787 to align # Constraint # added constraint: constraint((T0313)A131.CB, (T0313)L162.CB) [> 4.4397 = 7.3994 < 9.6193] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y124.CB, (T0313)T223.CB) [> 4.0514 = 6.7524 < 8.7781] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L108.CB, (T0313)D177.CB) [> 4.7916 = 7.9860 < 10.3818] w=0.0787 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)R189.CB) [> 4.0540 = 6.7567 < 8.7837] w=0.0787 to align # Constraint # added constraint: constraint((T0313)E95.CB, (T0313)G185.CA) [> 3.8696 = 6.4493 < 8.3842] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L138.CB, (T0313)Y163.CB) [> 4.2458 = 7.0763 < 9.1992] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)Q161.CB) [> 2.9332 = 4.8887 < 6.3554] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V137.CB, (T0313)R153.CB) [> 4.5471 = 7.5785 < 9.8521] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y134.CB, (T0313)N197.CB) [> 4.3092 = 7.1820 < 9.3366] w=0.0787 to align # Constraint # added constraint: constraint((T0313)D32.CB, (T0313)D49.CB) [> 4.6180 = 7.6966 < 10.0056] w=0.0787 to align # Constraint # added constraint: constraint((T0313)D28.CB, (T0313)E47.CB) [> 4.7969 = 7.9949 < 10.3933] w=0.0787 to align # Constraint # added constraint: constraint((T0313)P10.CB, (T0313)T22.CB) [> 4.7952 = 7.9920 < 10.3896] w=0.0787 to align # Constraint # added constraint: constraint((T0313)I2.CB, (T0313)S290.CB) [> 4.7736 = 7.9560 < 10.3428] w=0.0787 to align # Constraint # added constraint: constraint((T0313)Y92.CB, (T0313)P101.CB) [> 4.7263 = 7.8772 < 10.2404] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)H199.CB) [> 4.5283 = 7.5472 < 9.8114] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)N197.CB) [> 4.7994 = 7.9990 < 10.3987] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T91.CB, (T0313)R189.CB) [> 2.7770 = 4.6284 < 6.0169] w=0.0787 to align # Constraint # added constraint: constraint((T0313)A88.CB, (T0313)V299.CB) [> 4.7352 = 7.8920 < 10.2596] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T86.CB, (T0313)A232.CB) [> 4.6696 = 7.7827 < 10.1175] w=0.0787 to align # Constraint # added constraint: constraint((T0313)F76.CB, (T0313)K225.CB) [> 4.7088 = 7.8480 < 10.2024] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S71.CB, (T0313)S293.CB) [> 3.6834 = 6.1391 < 7.9808] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L207.CB, (T0313)L226.CB) [> 4.7604 = 7.9341 < 10.3143] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S203.CB, (T0313)E249.CB) [> 4.3724 = 7.2874 < 9.4736] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L196.CB, (T0313)E249.CB) [> 4.4097 = 7.3495 < 9.5544] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L267.CB, (T0313)V321.CB) [> 4.0675 = 6.7792 < 8.8130] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)N254.CB) [> 3.8680 = 6.4466 < 8.3806] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)Q251.CB) [> 3.1306 = 5.2177 < 6.7830] w=0.0787 to align # Constraint # added constraint: constraint((T0313)S240.CB, (T0313)A250.CB) [> 1.9817 = 3.3028 < 4.2937] w=0.0787 to align # Constraint # added constraint: constraint((T0313)K239.CB, (T0313)E249.CB) [> 3.2583 = 5.4305 < 7.0597] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)E310.CB) [> 4.5612 = 7.6019 < 9.8825] w=0.0787 to align # Constraint # added constraint: constraint((T0313)V237.CB, (T0313)I253.CB) [> 3.1779 = 5.2965 < 6.8855] w=0.0787 to align # Constraint # added constraint: constraint((T0313)K149.CB, (T0313)L196.CB) [> 3.9548 = 6.5913 < 8.5687] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L141.CB, (T0313)F193.CB) [> 4.6082 = 7.6803 < 9.9844] w=0.0787 to align # Constraint # added constraint: constraint((T0313)R139.CB, (T0313)F193.CB) [> 3.1616 = 5.2693 < 6.8500] w=0.0787 to align # Constraint # added constraint: constraint((T0313)L196.CB, (T0313)R246.CB) [> 4.1625 = 6.9375 < 9.0187] w=0.0787 to align # Constraint # added constraint: constraint((T0313)T190.CB, (T0313)S203.CB) [> 2.9200 = 4.8666 < 6.3266] w=0.0787 to align # Constraint # added constraint: constraint((T0313)G185.CA, (T0313)A205.CB) [> 4.7187 = 7.8645 < 10.2239] w=0.0787 to align # Constraint # added constraint: constraint((T0313)P156.CB, (T0313)Q286.CB) [> 4.4293 = 7.3822 < 9.5968] w=0.0787 to align # Constraint # added constraint: constraint((T0313)N23.CB, (T0313)L38.CB) [> 4.0633 = 6.7721 < 8.8037] w=0.0711 to align # Constraint # added constraint: constraint((T0313)T125.CB, (T0313)V172.CB) [> 4.6205 = 7.7009 < 10.0111] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T191.CB, (T0313)S203.CB) [> 4.1942 = 6.9904 < 9.0875] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T191.CB, (T0313)A205.CB) [> 4.7178 = 7.8630 < 10.2220] w=0.0560 to align # Constraint # added constraint: constraint((T0313)T26.CB, (T0313)P43.CB) [> 4.4885 = 7.4809 < 9.7251] w=0.0524 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)K50.CB) [> 4.1614 = 6.9357 < 9.0164] w=0.0524 to align # Constraint # added constraint: constraint((T0313)A98.CB, (T0313)V175.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.0524 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)F182.CB) [> 3.6997 = 6.1662 < 8.0161] w=0.0524 to align # Constraint # added constraint: constraint((T0313)I34.CB, (T0313)D49.CB) [> 4.3202 = 7.2003 < 9.3604] w=0.0524 to align # Constraint # added constraint: constraint((T0313)I35.CB, (T0313)L48.CB) [> 4.4278 = 7.3796 < 9.5935] w=0.0524 to align # Constraint # added constraint: constraint((T0313)H36.CB, (T0313)S45.CB) [> 3.5766 = 5.9610 < 7.7493] w=0.0524 to align # Constraint # added constraint: constraint((T0313)V11.CB, (T0313)A21.CB) [> 4.1474 = 6.9123 < 8.9860] w=0.0449 to align # Constraint # added constraint: constraint((T0313)L260.CB, (T0313)L285.CB) [> 4.4234 = 7.3724 < 9.5841] w=0.0339 to align # Constraint # added constraint: constraint((T0313)L37.CB, (T0313)T311.CB) [> 4.2990 = 7.1651 < 9.3146] w=0.0262 to align # Constraint # added constraint: constraint((T0313)V25.CB, (T0313)V301.CB) [> 3.6772 = 6.1287 < 7.9674] w=0.0262 to align # Constraint # added constraint: constraint((T0313)R246.CB, (T0313)K255.CB) [> 4.7219 = 7.8698 < 10.2308] w=0.0262 to align # Constraint # added constraint: constraint((T0313)S234.CB, (T0313)R246.CB) [> 4.6614 = 7.7689 < 10.0996] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T194.CB, (T0313)R246.CB) [> 4.6912 = 7.8186 < 10.1642] w=0.0262 to align # Constraint # added constraint: constraint((T0313)G96.CA, (T0313)H186.CB) [> 3.4140 = 5.6900 < 7.3970] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)R106.CB) [> 3.3561 = 5.5934 < 7.2714] w=0.0262 to align # Constraint # added constraint: constraint((T0313)T97.CB, (T0313)Q109.CB) [> 3.6866 = 6.1444 < 7.9877] w=0.0262 to align # Constraint # added constraint: constraint((T0313)F27.CB, (T0313)E47.CB) [> 4.6674 = 7.7790 < 10.1127] w=0.0187 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0313/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0313/decoys/ # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 16 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 538, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 540, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 798, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 800, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 802, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 804, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 914, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 916, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 918, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 920, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 930, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 932, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 934, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 936, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 1204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)Q66.O and (T0313)A67.N only 0.000 apart, marking (T0313)A67.N as missing WARNING: atoms too close: (T0313)N104.O and (T0313)Q105.N only 0.000 apart, marking (T0313)Q105.N as missing WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing WARNING: atoms too close: (T0313)V304.O and (T0313)E305.N only 0.000 apart, marking (T0313)E305.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)L162.O and (T0313)Y163.N only 0.000 apart, marking (T0313)Y163.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0313)P303.O and (T0313)V304.N only 0.000 apart, marking (T0313)V304.N as missing # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0313 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 254 model score -0.7071 model score -0.7043 model score -0.6743 model score -0.6957 model score -0.6458 model score -0.6783 model score -0.5811 model score -0.6342 model score -0.5898 model score -0.6086 model score -0.6698 model score -0.6606 model score -0.6658 model score -0.6214 model score -0.6681 model score -0.6301 model score -0.6547 model score -0.6238 model score -0.5472 model score -0.6614 model score -0.7250 model score -0.5912 model score 2.0079 model score -0.7145 model score -0.2621 model score 2.1892 model score 2.0216 model score 2.0230 model score 2.0484 model score 2.1423 model score -0.7376 model score -0.7235 model score -0.5676 model score -0.7221 model score -0.6297 model score -0.7218 model score -0.6592 model score -0.6870 model score -0.6178 model score -0.6838 model score -0.6706 model score -0.5866 model score -0.5563 model score -0.5923 model score -0.6693 model score -0.6419 model score -0.6230 model score 1.2686 model score 1.2689 model score 1.2697 model score 1.2710 model score 1.2724 model score -0.6034 model score -0.6249 model score -0.6786 model score -0.6092 model score -0.6514 model score -0.6423 model score -0.6870 model score -0.6592 model score -0.6838 model score -0.5793 model score -0.7163 model score 0.0114 model score -0.2488 model score -0.6287 model score -0.7002 model score 1.2684 model score 1.2675 model score 1.2673 model score 1.2681 model score 1.2675 model score 1.2684 model score 1.2675 model score 1.2675 model score 1.2784 model score 1.2673 model score 2.3089 model score 2.3230 model score 2.4588 model score 2.3317 model score 2.4728 model score 1.2672 model score 1.2833 model score 1.2854 model score 1.2849 model score 1.2771 model score -0.6882 model score -0.6810 model score -0.6455 model score -0.6387 model score -0.6191 model score -0.1139 model score -0.6699 model score -0.7041 model score -0.6072 model score -0.5913 model score -0.4137 model score -0.6484 model score -0.7528 model score -0.7528 model score -0.5842 model score -0.6142 model score -0.5917 model score -0.5034 model score -0.3780 model score -0.5139 model score -0.5043 model score -0.5393 model score -0.4314 model score -0.4048 model score -0.6893 model score -0.6418 model score -0.6502 model score -0.5524 model score -0.5492 model score -0.4531 model score -0.5436 model score -0.4828 model score -0.4878 model score -0.4340 model score -0.5139 model score -0.6693 model score -0.6667 model score -0.6639 model score -0.6602 model score -0.6656 model score -0.6693 model score -0.6762 model score -0.6903 model score 0.3051 model score -0.6859 model score -0.6558 model score -0.7149 model score -0.6292 model score -0.7188 model score -0.6558 model score -0.6063 model score -0.6264 model score -0.6264 model score -0.6264 model score -0.6555 model score -0.6555 model score -0.6957 model score -0.6743 model score -0.6388 model score -0.6281 model score -0.7052 model score -0.5712 model score -0.7431 model score -0.6424 model score -0.7026 model score -0.6152 model score -0.6372 model score -0.6403 model score -0.5377 model score -0.6105 model score -0.6527 model score -0.6562 model score -0.6960 model score -0.5537 model score -0.6417 model score -0.6982 model score -0.7071 model score -0.7043 model score -0.6743 model score -0.6957 model score -0.6458 model score -0.7040 model score -0.7089 model score -0.7133 model score -0.7140 model score -0.7000 model score 1.2677 model score 1.2675 model score 1.2685 model score 1.2676 model score 1.2675 model score 1.2680 model score 1.2679 model score 1.2673 model score 1.2682 model score 1.2685 model score -0.7382 model score -0.7250 model score -0.7292 model score -0.5114 model score -0.5295 model score -0.5894 model score -0.6640 model score -0.7127 model score -0.6631 model score -0.5361 model score -0.5867 model score -0.6640 model score -0.7101 model score -0.6278 model score -0.6930 model score -0.5866 model score -0.6640 model score -0.7175 model score -0.6892 model score -0.5632 model score 1.2675 model score 1.2678 model score 1.2673 model score 1.2684 model score 1.2679 model score -0.6459 model score 1.2675 model score 1.2678 model score 1.2673 model score 1.2684 model score 1.2679 model score -0.6751 model score -0.6829 model score -0.6632 model score -0.5801 model score -0.6104 model score -0.6875 model score -0.5896 model score 1.2675 model score 1.2681 model score 1.2673 model score 1.2675 model score 1.2771 model score -0.7108 model score -0.7325 model score -0.6975 model score 2.3847 model score 2.3725 model score 2.5644 model score 2.3525 model score 2.2689 model score 2.0209 model score 2.2250 model score -0.7137 model score -0.6893 model score 1.9703 model score 2.1509 model score 2.0639 model score -0.6028 model score -0.6128 model score -0.6128 model score -0.6128 model score -0.5919 model score -0.7019 model score -0.6980 model score -0.5808 model score -0.6044 model score 2.2403 model score 2.1699 model score -0.6370 model score -0.6699 weight: 0.9876 eval: -0.7071 min: -0.7528 max: 2.5644 weight: 0.9868 eval: -0.7043 min: -0.7528 max: 2.5644 weight: 0.9787 eval: -0.6743 min: -0.7528 max: 2.5644 weight: 0.9845 eval: -0.6957 min: -0.7528 max: 2.5644 weight: 0.9710 eval: -0.6458 min: -0.7528 max: 2.5644 weight: 0.9798 eval: -0.6783 min: -0.7528 max: 2.5644 weight: 0.9534 eval: -0.5811 min: -0.7528 max: 2.5644 weight: 0.9678 eval: -0.6342 min: -0.7528 max: 2.5644 weight: 0.9558 eval: -0.5898 min: -0.7528 max: 2.5644 weight: 0.9609 eval: -0.6086 min: -0.7528 max: 2.5644 weight: 0.9775 eval: -0.6698 min: -0.7528 max: 2.5644 weight: 0.9750 eval: -0.6606 min: -0.7528 max: 2.5644 weight: 0.9764 eval: -0.6658 min: -0.7528 max: 2.5644 weight: 0.9643 eval: -0.6214 min: -0.7528 max: 2.5644 weight: 0.9770 eval: -0.6681 min: -0.7528 max: 2.5644 weight: 0.9667 eval: -0.6301 min: -0.7528 max: 2.5644 weight: 0.9734 eval: -0.6547 min: -0.7528 max: 2.5644 weight: 0.9650 eval: -0.6238 min: -0.7528 max: 2.5644 weight: 0.9442 eval: -0.5472 min: -0.7528 max: 2.5644 weight: 0.9752 eval: -0.6614 min: -0.7528 max: 2.5644 weight: 0.9925 eval: -0.7250 min: -0.7528 max: 2.5644 weight: 0.9562 eval: -0.5912 min: -0.7528 max: 2.5644 weight: 0.2510 eval: 2.0079 min: -0.7528 max: 2.5644 weight: 0.9896 eval: -0.7145 min: -0.7528 max: 2.5644 weight: 0.8669 eval: -0.2621 min: -0.7528 max: 2.5644 weight: 0.2018 eval: 2.1892 min: -0.7528 max: 2.5644 weight: 0.2473 eval: 2.0216 min: -0.7528 max: 2.5644 weight: 0.2469 eval: 2.0230 min: -0.7528 max: 2.5644 weight: 0.2400 eval: 2.0484 min: -0.7528 max: 2.5644 weight: 0.2145 eval: 2.1423 min: -0.7528 max: 2.5644 weight: 0.9959 eval: -0.7376 min: -0.7528 max: 2.5644 weight: 0.9921 eval: -0.7235 min: -0.7528 max: 2.5644 weight: 0.9498 eval: -0.5676 min: -0.7528 max: 2.5644 weight: 0.9917 eval: -0.7221 min: -0.7528 max: 2.5644 weight: 0.9666 eval: -0.6297 min: -0.7528 max: 2.5644 weight: 0.9916 eval: -0.7218 min: -0.7528 max: 2.5644 weight: 0.9746 eval: -0.6592 min: -0.7528 max: 2.5644 weight: 0.9821 eval: -0.6870 min: -0.7528 max: 2.5644 weight: 0.9634 eval: -0.6178 min: -0.7528 max: 2.5644 weight: 0.9813 eval: -0.6838 min: -0.7528 max: 2.5644 weight: 0.9777 eval: -0.6706 min: -0.7528 max: 2.5644 weight: 0.9549 eval: -0.5866 min: -0.7528 max: 2.5644 weight: 0.9467 eval: -0.5563 min: -0.7528 max: 2.5644 weight: 0.9564 eval: -0.5923 min: -0.7528 max: 2.5644 weight: 0.9773 eval: -0.6693 min: -0.7528 max: 2.5644 weight: 0.9699 eval: -0.6419 min: -0.7528 max: 2.5644 weight: 0.9648 eval: -0.6230 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2686 min: -0.7528 max: 2.5644 weight: 0.4515 eval: 1.2689 min: -0.7528 max: 2.5644 weight: 0.4513 eval: 1.2697 min: -0.7528 max: 2.5644 weight: 0.4509 eval: 1.2710 min: -0.7528 max: 2.5644 weight: 0.4505 eval: 1.2724 min: -0.7528 max: 2.5644 weight: 0.9595 eval: -0.6034 min: -0.7528 max: 2.5644 weight: 0.9653 eval: -0.6249 min: -0.7528 max: 2.5644 weight: 0.9799 eval: -0.6786 min: -0.7528 max: 2.5644 weight: 0.9610 eval: -0.6092 min: -0.7528 max: 2.5644 weight: 0.9725 eval: -0.6514 min: -0.7528 max: 2.5644 weight: 0.9700 eval: -0.6423 min: -0.7528 max: 2.5644 weight: 0.9821 eval: -0.6870 min: -0.7528 max: 2.5644 weight: 0.9746 eval: -0.6592 min: -0.7528 max: 2.5644 weight: 0.9813 eval: -0.6838 min: -0.7528 max: 2.5644 weight: 0.9529 eval: -0.5793 min: -0.7528 max: 2.5644 weight: 0.9901 eval: -0.7163 min: -0.7528 max: 2.5644 weight: 0.7927 eval: 0.0114 min: -0.7528 max: 2.5644 weight: 0.8633 eval: -0.2488 min: -0.7528 max: 2.5644 weight: 0.9663 eval: -0.6287 min: -0.7528 max: 2.5644 weight: 0.9857 eval: -0.7002 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2684 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.4517 eval: 1.2681 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2684 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4489 eval: 1.2784 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.1693 eval: 2.3089 min: -0.7528 max: 2.5644 weight: 0.1655 eval: 2.3230 min: -0.7528 max: 2.5644 weight: 0.1287 eval: 2.4588 min: -0.7528 max: 2.5644 weight: 0.1631 eval: 2.3317 min: -0.7528 max: 2.5644 weight: 0.1248 eval: 2.4728 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2672 min: -0.7528 max: 2.5644 weight: 0.4476 eval: 1.2833 min: -0.7528 max: 2.5644 weight: 0.4470 eval: 1.2854 min: -0.7528 max: 2.5644 weight: 0.4471 eval: 1.2849 min: -0.7528 max: 2.5644 weight: 0.4493 eval: 1.2771 min: -0.7528 max: 2.5644 weight: 0.9825 eval: -0.6882 min: -0.7528 max: 2.5644 weight: 0.9805 eval: -0.6810 min: -0.7528 max: 2.5644 weight: 0.9709 eval: -0.6455 min: -0.7528 max: 2.5644 weight: 0.9690 eval: -0.6387 min: -0.7528 max: 2.5644 weight: 0.9637 eval: -0.6191 min: -0.7528 max: 2.5644 weight: 0.8267 eval: -0.1139 min: -0.7528 max: 2.5644 weight: 0.9775 eval: -0.6699 min: -0.7528 max: 2.5644 weight: 0.9868 eval: -0.7041 min: -0.7528 max: 2.5644 weight: 0.9605 eval: -0.6072 min: -0.7528 max: 2.5644 weight: 0.9562 eval: -0.5913 min: -0.7528 max: 2.5644 weight: 0.9080 eval: -0.4137 min: -0.7528 max: 2.5644 weight: 0.9717 eval: -0.6484 min: -0.7528 max: 2.5644 weight: 1.0000 eval: -0.7528 min: -0.7528 max: 2.5644 weight: 1.0000 eval: -0.7528 min: -0.7528 max: 2.5644 weight: 0.9543 eval: -0.5842 min: -0.7528 max: 2.5644 weight: 0.9624 eval: -0.6142 min: -0.7528 max: 2.5644 weight: 0.9563 eval: -0.5917 min: -0.7528 max: 2.5644 weight: 0.9323 eval: -0.5034 min: -0.7528 max: 2.5644 weight: 0.8983 eval: -0.3780 min: -0.7528 max: 2.5644 weight: 0.9352 eval: -0.5139 min: -0.7528 max: 2.5644 weight: 0.9326 eval: -0.5043 min: -0.7528 max: 2.5644 weight: 0.9421 eval: -0.5393 min: -0.7528 max: 2.5644 weight: 0.9128 eval: -0.4314 min: -0.7528 max: 2.5644 weight: 0.9056 eval: -0.4048 min: -0.7528 max: 2.5644 weight: 0.9828 eval: -0.6893 min: -0.7528 max: 2.5644 weight: 0.9699 eval: -0.6418 min: -0.7528 max: 2.5644 weight: 0.9722 eval: -0.6502 min: -0.7528 max: 2.5644 weight: 0.9456 eval: -0.5524 min: -0.7528 max: 2.5644 weight: 0.9448 eval: -0.5492 min: -0.7528 max: 2.5644 weight: 0.9187 eval: -0.4531 min: -0.7528 max: 2.5644 weight: 0.9432 eval: -0.5436 min: -0.7528 max: 2.5644 weight: 0.9268 eval: -0.4828 min: -0.7528 max: 2.5644 weight: 0.9281 eval: -0.4878 min: -0.7528 max: 2.5644 weight: 0.9135 eval: -0.4340 min: -0.7528 max: 2.5644 weight: 0.9352 eval: -0.5139 min: -0.7528 max: 2.5644 weight: 0.9773 eval: -0.6693 min: -0.7528 max: 2.5644 weight: 0.9766 eval: -0.6667 min: -0.7528 max: 2.5644 weight: 0.9759 eval: -0.6639 min: -0.7528 max: 2.5644 weight: 0.9749 eval: -0.6602 min: -0.7528 max: 2.5644 weight: 0.9763 eval: -0.6656 min: -0.7528 max: 2.5644 weight: 0.9773 eval: -0.6693 min: -0.7528 max: 2.5644 weight: 0.9792 eval: -0.6762 min: -0.7528 max: 2.5644 weight: 0.9830 eval: -0.6903 min: -0.7528 max: 2.5644 weight: 0.7130 eval: 0.3051 min: -0.7528 max: 2.5644 weight: 0.9818 eval: -0.6859 min: -0.7528 max: 2.5644 weight: 0.9737 eval: -0.6558 min: -0.7528 max: 2.5644 weight: 0.9897 eval: -0.7149 min: -0.7528 max: 2.5644 weight: 0.9665 eval: -0.6292 min: -0.7528 max: 2.5644 weight: 0.9908 eval: -0.7188 min: -0.7528 max: 2.5644 weight: 0.9737 eval: -0.6558 min: -0.7528 max: 2.5644 weight: 0.9603 eval: -0.6063 min: -0.7528 max: 2.5644 weight: 0.9657 eval: -0.6264 min: -0.7528 max: 2.5644 weight: 0.9657 eval: -0.6264 min: -0.7528 max: 2.5644 weight: 0.9657 eval: -0.6264 min: -0.7528 max: 2.5644 weight: 0.9736 eval: -0.6555 min: -0.7528 max: 2.5644 weight: 0.9736 eval: -0.6555 min: -0.7528 max: 2.5644 weight: 0.9845 eval: -0.6957 min: -0.7528 max: 2.5644 weight: 0.9787 eval: -0.6743 min: -0.7528 max: 2.5644 weight: 0.9691 eval: -0.6388 min: -0.7528 max: 2.5644 weight: 0.9662 eval: -0.6281 min: -0.7528 max: 2.5644 weight: 0.9871 eval: -0.7052 min: -0.7528 max: 2.5644 weight: 0.9507 eval: -0.5712 min: -0.7528 max: 2.5644 weight: 0.9974 eval: -0.7431 min: -0.7528 max: 2.5644 weight: 0.9700 eval: -0.6424 min: -0.7528 max: 2.5644 weight: 0.9864 eval: -0.7026 min: -0.7528 max: 2.5644 weight: 0.9627 eval: -0.6152 min: -0.7528 max: 2.5644 weight: 0.9686 eval: -0.6372 min: -0.7528 max: 2.5644 weight: 0.9695 eval: -0.6403 min: -0.7528 max: 2.5644 weight: 0.9416 eval: -0.5377 min: -0.7528 max: 2.5644 weight: 0.9614 eval: -0.6105 min: -0.7528 max: 2.5644 weight: 0.9728 eval: -0.6527 min: -0.7528 max: 2.5644 weight: 0.9738 eval: -0.6562 min: -0.7528 max: 2.5644 weight: 0.9846 eval: -0.6960 min: -0.7528 max: 2.5644 weight: 0.9460 eval: -0.5537 min: -0.7528 max: 2.5644 weight: 0.9699 eval: -0.6417 min: -0.7528 max: 2.5644 weight: 0.9852 eval: -0.6982 min: -0.7528 max: 2.5644 weight: 0.9876 eval: -0.7071 min: -0.7528 max: 2.5644 weight: 0.9868 eval: -0.7043 min: -0.7528 max: 2.5644 weight: 0.9787 eval: -0.6743 min: -0.7528 max: 2.5644 weight: 0.9845 eval: -0.6957 min: -0.7528 max: 2.5644 weight: 0.9710 eval: -0.6458 min: -0.7528 max: 2.5644 weight: 0.9868 eval: -0.7040 min: -0.7528 max: 2.5644 weight: 0.9881 eval: -0.7089 min: -0.7528 max: 2.5644 weight: 0.9893 eval: -0.7133 min: -0.7528 max: 2.5644 weight: 0.9895 eval: -0.7140 min: -0.7528 max: 2.5644 weight: 0.9857 eval: -0.7000 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2677 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2685 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2676 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4517 eval: 1.2680 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2679 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.4517 eval: 1.2682 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2685 min: -0.7528 max: 2.5644 weight: 0.9960 eval: -0.7382 min: -0.7528 max: 2.5644 weight: 0.9925 eval: -0.7250 min: -0.7528 max: 2.5644 weight: 0.9936 eval: -0.7292 min: -0.7528 max: 2.5644 weight: 0.9345 eval: -0.5114 min: -0.7528 max: 2.5644 weight: 0.9394 eval: -0.5295 min: -0.7528 max: 2.5644 weight: 0.9557 eval: -0.5894 min: -0.7528 max: 2.5644 weight: 0.9759 eval: -0.6640 min: -0.7528 max: 2.5644 weight: 0.9891 eval: -0.7127 min: -0.7528 max: 2.5644 weight: 0.9757 eval: -0.6631 min: -0.7528 max: 2.5644 weight: 0.9412 eval: -0.5361 min: -0.7528 max: 2.5644 weight: 0.9549 eval: -0.5867 min: -0.7528 max: 2.5644 weight: 0.9759 eval: -0.6640 min: -0.7528 max: 2.5644 weight: 0.9884 eval: -0.7101 min: -0.7528 max: 2.5644 weight: 0.9661 eval: -0.6278 min: -0.7528 max: 2.5644 weight: 0.9838 eval: -0.6930 min: -0.7528 max: 2.5644 weight: 0.9549 eval: -0.5866 min: -0.7528 max: 2.5644 weight: 0.9759 eval: -0.6640 min: -0.7528 max: 2.5644 weight: 0.9904 eval: -0.7175 min: -0.7528 max: 2.5644 weight: 0.9827 eval: -0.6892 min: -0.7528 max: 2.5644 weight: 0.9486 eval: -0.5632 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2678 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2684 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2679 min: -0.7528 max: 2.5644 weight: 0.9710 eval: -0.6459 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2678 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.4516 eval: 1.2684 min: -0.7528 max: 2.5644 weight: 0.4518 eval: 1.2679 min: -0.7528 max: 2.5644 weight: 0.9789 eval: -0.6751 min: -0.7528 max: 2.5644 weight: 0.9810 eval: -0.6829 min: -0.7528 max: 2.5644 weight: 0.9757 eval: -0.6632 min: -0.7528 max: 2.5644 weight: 0.9531 eval: -0.5801 min: -0.7528 max: 2.5644 weight: 0.9614 eval: -0.6104 min: -0.7528 max: 2.5644 weight: 0.9823 eval: -0.6875 min: -0.7528 max: 2.5644 weight: 0.9557 eval: -0.5896 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4517 eval: 1.2681 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2673 min: -0.7528 max: 2.5644 weight: 0.4519 eval: 1.2675 min: -0.7528 max: 2.5644 weight: 0.4493 eval: 1.2771 min: -0.7528 max: 2.5644 weight: 0.9886 eval: -0.7108 min: -0.7528 max: 2.5644 weight: 0.9945 eval: -0.7325 min: -0.7528 max: 2.5644 weight: 0.9850 eval: -0.6975 min: -0.7528 max: 2.5644 weight: 0.1488 eval: 2.3847 min: -0.7528 max: 2.5644 weight: 0.1521 eval: 2.3725 min: -0.7528 max: 2.5644 weight: 0.1000 eval: 2.5644 min: -0.7528 max: 2.5644 weight: 0.1575 eval: 2.3525 min: -0.7528 max: 2.5644 weight: 0.1802 eval: 2.2689 min: -0.7528 max: 2.5644 weight: 0.2474 eval: 2.0209 min: -0.7528 max: 2.5644 weight: 0.1921 eval: 2.2250 min: -0.7528 max: 2.5644 weight: 0.9894 eval: -0.7137 min: -0.7528 max: 2.5644 weight: 0.9828 eval: -0.6893 min: -0.7528 max: 2.5644 weight: 0.2612 eval: 1.9703 min: -0.7528 max: 2.5644 weight: 0.2122 eval: 2.1509 min: -0.7528 max: 2.5644 weight: 0.2358 eval: 2.0639 min: -0.7528 max: 2.5644 weight: 0.9593 eval: -0.6028 min: -0.7528 max: 2.5644 weight: 0.9620 eval: -0.6128 min: -0.7528 max: 2.5644 weight: 0.9620 eval: -0.6128 min: -0.7528 max: 2.5644 weight: 0.9620 eval: -0.6128 min: -0.7528 max: 2.5644 weight: 0.9563 eval: -0.5919 min: -0.7528 max: 2.5644 weight: 0.9862 eval: -0.7019 min: -0.7528 max: 2.5644 weight: 0.9851 eval: -0.6980 min: -0.7528 max: 2.5644 weight: 0.9533 eval: -0.5808 min: -0.7528 max: 2.5644 weight: 0.9597 eval: -0.6044 min: -0.7528 max: 2.5644 weight: 0.1879 eval: 2.2403 min: -0.7528 max: 2.5644 weight: 0.2070 eval: 2.1699 min: -0.7528 max: 2.5644 weight: 0.9686 eval: -0.6370 min: -0.7528 max: 2.5644 weight: 0.9775 eval: -0.6699 min: -0.7528 max: 2.5644 Adding 12151 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -570.6395, CN propb: -570.6395 weights: 0.4701 constraints: 973 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 973 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 973 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 11178 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 11178 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 12151 # command: