# List of top-scoring protein chains for T0385.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w66A 232 5.28e-01 1jj2K 164 1.70e+00 1ffkJ c.12.1.1 63096 1vqoL 165 1.70e+00 1r5pA 108 1.88e+00 c.47.1.15 97101 1wwjA 105 2.17e+00 1y6bA 366 2.88e+00 2c36A 285 3.91e+00 2c3aA 286 3.92e+00 1l2gA 287 4.14e+00 b.1.1.1 91048 1vglA 108 4.34e+00 1jmaA 290 4.37e+00 b.1.1.1 63177 1mfrA 176 6.06e+00 2fha a.25.1.1 16692 1wryA 121 6.41e+00 1vr2A 316 6.88e+00 1fgkA d.144.1.7 41701 1u6tA 121 6.88e+00 1zhvA 134 7.53e+00 1tzvA 142 7.93e+00 a.79.1.1 107526 2a2mA 258 8.12e+00 2hntE 81 8.40e+00 1ucyH 1ywnA 316 8.56e+00 2fo7A 136 9.26e+00 1u70A 186 9.95e+00 1bev3 242 1.30e+01 1aym3 1us6A 102 1.35e+01 a.2.13.1 107999 1rfyA 102 1.38e+01 1lvgA 198 1.38e+01 c.37.1.1 78242 2aplA 157 1.45e+01 1na0A 125 1.50e+01 k.38.1.1 85479 1cpy 421 1.63e+01 1ivyA c.69.1.5 34651 1zbsA 291 1.82e+01 2dc4A 165 1.84e+01 1kxd 159 1.90e+01 1svpA b.47.1.3 26392 1nvjA 140 2.15e+01 d.41.5.1 86243 1fm0E 150 2.24e+01 1fmaE d.41.5.1 38629 1m2bA 110 2.35e+01 c.47.1.11 78474 1kkhA 317 2.36e+01 d.14.1.5,d.58.26.3 72645,72646 1qhhB 273 2.39e+01 1pjr 1riwB 147 2.42e+01 1visA 324 2.49e+01 d.14.1.5,d.58.26.3 100769,100770 1ufvA 276 2.57e+01 c.26.1.4 88487 1m2aA 110 2.59e+01 c.47.1.11 78472 1x31D 99 2.60e+01 1qpkA 418 2.76e+01 1jdc b.71.1.1,c.1.8.1 27793,28780 1ueqA 123 2.99e+01 b.36.1.1 99271 1ne2A 200 3.00e+01 c.66.1.32 85586 1qc7A 101 3.02e+01 1qc7A a.118.14.1 18456 2b4sB 306 3.13e+01 1d3yA 301 3.13e+01 1d3yA e.12.1.1 43252 2amg 418 3.17e+01 1jdc b.71.1.1,c.1.8.1 27796,28783 1jdc 429 3.18e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1qi3A 429 3.18e+01 1jdc b.71.1.1,c.1.8.1 27794,28781 1irk 306 3.19e+01 1fmk d.144.1.7 41703 1qi4A 429 3.22e+01 1jdc b.71.1.1,c.1.8.1 27791,28778 1ir3A 306 3.23e+01 1fmk d.144.1.7 41702 1i44A 306 3.25e+01 1fmk d.144.1.7 61664 1m2dA 110 3.33e+01 c.47.1.11 78476 1qi5A 429 3.35e+01 1jdc b.71.1.1,c.1.8.1 27792,28779 1p14A 306 3.43e+01 d.144.1.7 87660 1bax 94 3.45e+01 1bax a.61.1.3 18133 1k3aA 299 3.46e+01 d.144.1.7 68098 1dxhA 335 3.51e+01 1othA c.78.1.1,c.78.1.1 35202,35203 1cf5A 249 3.53e+01 1mrj d.165.1.1 42191 1ortA 335 3.55e+01 1othA c.78.1.1,c.78.1.1 35204,35205 1gcyA 527 3.64e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1d8vA 263 3.65e+01 1mrj d.165.1.1 42193 1jqhA 308 3.76e+01 d.144.1.7 71793 1s1iG 119 3.76e+01 i.1.1.1 105181 2cwkA 160 3.78e+01 1fdyA 297 3.91e+01 1nal3 c.1.10.1 29071 1jglH 218 3.91e+01 b.1.1.1,b.1.1.2 66679,66680 1e19A 314 3.94e+01 1b7bA c.73.1.1 34967 1zzgA 415 3.97e+01 1bia 321 4.02e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1p4oA 322 4.04e+01 d.144.1.7 87775 1nal1 297 4.08e+01 1nal3 1ug3A 339 4.10e+01 2bxjA 101 4.13e+01 1kxvC 121 4.15e+01 b.1.1.1 73190 1m7nA 322 4.17e+01 d.144.1.7 78738 2fha 183 4.41e+01 2fha a.25.1.1 16674 1wpxA 421 4.45e+01 1led 243 4.46e+01 1led b.29.1.1 24039 1x4gA 109 4.51e+01 1v8fA 276 4.92e+01 c.26.1.4 100503 1louA 101 4.93e+01 1ris d.58.14.1 39323 1dbdA 100 5.14e+01 2bopA d.58.8.1 39218 1ni4B 341 5.15e+01 c.36.1.7,c.48.1.2 85729,85730 1hl2A 297 5.15e+01 c.1.10.1 83581 1jjhA 86 5.22e+01 2bopA d.58.8.1 63119 2bopA 85 5.24e+01 2bopA d.58.8.1 39217 1mzrA 296 5.36e+01 c.1.7.1 91500 1i2kA 269 5.36e+01 e.17.1.1 90661 2astA 159 5.54e+01 1nxiA 132 5.56e+01 d.58.47.1 86381 2fv1A 377 5.68e+01 2fuzA 377 6.01e+01 1qjbA 245 6.11e+01 1qjaA a.118.7.1 19202 2c1nA 258 6.37e+01 2c7bA 311 6.50e+01 1v5xA 203 6.54e+01 c.1.2.4 100377 1a32 88 6.57e+01 1a32 a.16.1.2 16384 2bvzA 101 6.61e+01 2d0sA 79 6.67e+01 1tdqB 130 6.79e+01 d.169.1.1 106785 1dypA 271 6.81e+01 1dypA b.29.1.2 24185 1wwiA 148 7.12e+01 1o1wA 138 7.30e+01 c.55.3.1 81078 1qu0A 191 7.37e+01 1dykA b.29.1.4 24225 1earA 147 7.42e+01 b.107.1.1,d.58.38.1 64875,64876 1qd7E 97 7.45e+01 1ris i.1.1.3 45868 1bhe 376 7.51e+01 1bhe b.80.1.3 28030 1g1xA 98 7.54e+01 1ris d.58.14.1 39327 1qd7H 85 7.58e+01 1a32 i.1.1.3 45871 1ihoA 283 7.58e+01 1ihoA c.26.1.4 62390 1ldkD 133 7.64e+01 a.157.1.1,d.42.1.1 73855,73856 1fs1B 141 7.70e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1ris 101 7.80e+01 1ris d.58.14.1 39314 2bebA 186 7.84e+01 2et2A 186 7.84e+01 4wbcA 183 7.86e+01 1wba b.42.4.1 25596 2esuA 186 7.87e+01 1fmzA 186 7.87e+01 1wba b.42.4.1 25594 2h3jA 75 7.90e+01 1ux8A 132 7.91e+01 1eylA 186 7.94e+01 1wba b.42.4.1 25593 2beaA 186 7.94e+01 1fn0A 186 8.02e+01 1wba b.42.4.1 25595 1z98A 281 8.31e+01 1za0A 275 8.31e+01 1xg6A 187 8.36e+01 1l7vC 249 8.37e+01 c.37.1.12 73674 1o51A 114 8.52e+01 d.58.5.4 92480 1mhhB 217 8.58e+01 b.1.1.1,b.1.1.2 79121,79122 1nlbH 218 8.68e+01 b.1.1.1,b.1.1.2 80621,80622 1sxgA 280 8.86e+01 1tr1A 447 8.90e+01 1e70M c.1.8.4 28957 1rjbA 344 8.95e+01 d.144.1.7 97557