# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ahc 246 2.47e+00 1mrj d.165.1.1 42184 1i8vA 96 2.55e+00 d.1.1.2 61985 1h5zA 455 2.78e+00 a.104.1.1 90622 1u13A 455 2.81e+00 a.104.1.1 107578 1gmpA 96 2.88e+00 1rgeA d.1.1.2 36036 1rgeA 96 2.99e+00 1rgeA d.1.1.2 36028 1y74B 50 3.59e+00 1lniA 96 3.78e+00 d.1.1.2 74046 1zl8B 54 3.88e+00 1x8vA 455 4.67e+00 1ea2A 131 5.79e+00 d.17.4.3 64860 1ea1A 455 6.85e+00 1ea1A a.104.1.1 18970 1mgrA 99 6.86e+00 d.1.1.2 79106 1lrv 244 6.88e+00 1lrv a.118.1.5 19146 1k3lA 221 6.89e+00 a.45.1.1,c.47.1.5 77229,77230 1uj6A 227 7.73e+00 c.124.1.4,d.58.40.1 107898,107899 1gseA 221 8.15e+00 1pgtA a.45.1.1,c.47.1.5 17667,32961 1pylA 97 8.36e+00 d.1.1.2 104391 1k3yA 221 8.46e+00 a.45.1.1,c.47.1.5 77245,77246 1e9xA 455 8.56e+00 1ea1A a.104.1.1 18969 1gvhA 396 9.00e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1i4yA 114 1.10e+01 2mhr a.24.4.1 61738 1cii 602 1.14e+01 1cii f.1.1.1,h.4.3.1 43381,45787 1tys 265 1.15e+01 1bkpA d.117.1.1 40937 2bzsA 236 1.21e+01 2tscA 264 1.25e+01 1bkpA d.117.1.1 40952 2g8oA 264 1.30e+01 1axwA 265 1.35e+01 1bkpA d.117.1.1 40938 1hjp 203 1.38e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 2a1iA 146 1.41e+01 1mrg 263 1.42e+01 1mrj d.165.1.1 42183 1bvsB 203 1.43e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16281,17956,25275 2g8mA 264 1.44e+01 2d69A 430 1.51e+01 1evfA 264 1.53e+01 1bkpA d.117.1.1 40932 1zx1A 231 1.58e+01 1qqqA 264 1.59e+01 1bkpA d.117.1.1 40931 1zy4A 303 1.59e+01 1hvyA 288 1.64e+01 1bkpA d.117.1.1 41049 2ah6A 208 1.67e+01 1lnh 857 1.68e+01 1yge a.119.1.1,b.12.1.1 19237,23637 1udvA 89 1.77e+01 d.68.6.1 99224 1lea 84 1.77e+01 1lea a.4.5.2 16085 1opy 131 1.79e+01 1opy d.17.4.3 38113 2cwxA 430 1.87e+01 2bkyX 89 1.96e+01 2f22A 144 2.00e+01 1udmA 149 2.05e+01 d.109.1.2 107780 1b8pA 329 2.10e+01 1bmdA c.2.1.5,d.162.1.1 30147,42114 1oyzA 280 2.13e+01 a.118.1.16 93775 1dmmA 131 2.15e+01 1opy d.17.4.3 38114 1pxwA 128 2.16e+01 d.79.3.1 95305 1ka2A 499 2.25e+01 d.92.1.5 77305 1jhfA 202 2.27e+01 a.4.5.2,b.87.1.1 63057,63058 1ox3A 109 2.35e+01 h.1.17.1 93668 1c1kA 217 2.45e+01 1c1kA a.120.1.1 19239 1aiqA 264 2.48e+01 1bkpA d.117.1.1 40967 1vkuA 100 2.54e+01 a.28.1.1 108690 1rovA 857 2.58e+01 a.119.1.1,b.12.1.1 97674,97675 1wurA 220 2.59e+01 1zq4A 693 2.85e+01 1t2lA 141 2.89e+01 1sg0A 230 2.89e+01 2f4mA 295 2.90e+01 1oh0A 131 3.00e+01 d.17.4.3 87004 1yb3A 175 3.03e+01 1wwzA 159 3.10e+01 1d1rA 116 3.14e+01 1d1rA d.64.1.1 39548 1lnwA 147 3.21e+01 a.4.5.28 78104 1fwkA 296 3.44e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 2h1nA 567 3.62e+01 1i6xA 209 3.70e+01 a.4.5.4,b.82.3.2 83673,83674 1iz1A 294 3.74e+01 a.4.5.37,c.94.1.1 83823,83824 1i1gA 141 3.80e+01 a.4.5.32,d.58.4.2 65982,65983 1b5eA 246 3.96e+01 1b5eA d.117.1.1 41056 1vkeA 133 4.00e+01 a.152.1.2 108650 2a9uA 144 4.07e+01 1ypvA 313 4.08e+01 1vl7A 157 4.15e+01 b.45.1.1 108732 1zvyA 136 4.15e+01 1k66A 149 4.41e+01 c.23.1.1 90941 1fjeB 175 4.45e+01 1fj7A d.58.7.1,d.58.7.1 39210,39211 1nulA 152 4.47e+01 1nulA c.61.1.1 34011 1xtcA 194 4.56e+01 1lt3A d.166.1.1 42259 1iq8A 582 4.59e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1wr8A 231 4.63e+01 1g6nA 210 4.70e+01 2cgpA a.4.5.4,b.82.3.2 16100,28139 1yn9A 169 4.74e+01 2fe8A 315 4.75e+01 1yge 839 4.81e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1lv3A 68 4.84e+01 g.39.1.9 78231 1lvaA 258 5.07e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wr2A 238 5.17e+01 1mrj 247 5.21e+01 1mrj d.165.1.1 42177 1fjgM 126 5.22e+01 1fjfM a.156.1.1 16293 1s4bP 674 5.26e+01 d.92.1.5 105252 1f8nA 839 5.32e+01 1yge a.119.1.1,b.12.1.1 59703,59704 1fjcA 96 5.33e+01 1fjcA d.58.7.1 39212 1nznA 126 5.34e+01 a.118.8.1 92382 2cz1A 206 5.35e+01 1pszA 303 5.44e+01 1toaA c.92.2.2 35600 1ixcA 294 5.68e+01 a.4.5.37,c.94.1.1 83764,83765 1l0lA 446 5.70e+01 d.185.1.1,d.185.1.1 84482,84483 1s6bB 119 5.85e+01 a.133.1.2 98593 1avoB 140 5.93e+01 1avoB 1ig6A 107 6.38e+01 1ig6A a.4.3.1 62364 1ppjD 241 6.65e+01 a.3.1.3,f.23.11.1 104258,104259 1i50K 120 6.78e+01 d.74.3.2 61765 1y791 680 6.81e+01 1zoyB 252 6.82e+01 2cgpA 210 6.89e+01 2cgpA a.4.5.4,b.82.3.2 16102,28141 1p8cA 145 6.91e+01 a.152.1.2 94354 1uxd 65 6.99e+01 1uxc a.35.1.5 17118 1u6bA 98 7.41e+01 d.58.7.1 107703 1qcrA 446 7.43e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1jr3E 334 7.44e+01 a.80.1.1,c.37.1.20 63253,63254 1fgqA 839 7.53e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1ppjA 446 7.68e+01 d.185.1.1,d.185.1.1 104252,104253 2cwyA 94 7.76e+01 1ustA 93 7.76e+01 a.4.5.13 99884 1or7A 194 7.88e+01 a.4.13.2,a.177.1.1 87332,87333 1qhdA 398 8.04e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1ni4A 365 8.11e+01 c.36.1.11 85728 1syxB 86 8.14e+01 1v3rA 116 8.17e+01 1vyiA 112 8.18e+01 1mq4A 272 8.31e+01 d.144.1.7 91391 1q79A 514 8.31e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1r1uA 106 8.36e+01 a.4.5.5 104771 1hs7A 97 8.37e+01 1hs7A a.47.2.1 61236 1hw5A 210 8.43e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1t7sA 137 8.58e+01 a.7.7.1 106636 1twfK 120 8.76e+01 1a5t 334 8.89e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1k7kA 221 8.92e+01 c.51.4.1 72104 1i52A 236 8.95e+01 1i52A c.68.1.13 61767