# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 6.05e-02 1yn9A 169 9.87e-01 1h3nA 878 1.19e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2cwyA 94 1.72e+00 1gvhA 396 1.93e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1x8vA 455 2.22e+00 1w68A 390 2.48e+00 a.25.1.2 109216 1lniA 96 4.03e+00 d.1.1.2 74046 1u2wA 122 4.04e+00 1lrv 244 4.46e+00 1lrv a.118.1.5 19146 1hm6A 346 4.56e+00 1avc a.65.1.1 18147 1vrmA 325 4.57e+00 1uhgA 385 4.80e+00 e.1.1.1 88491 1cuk 203 5.77e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2h1nA 567 6.11e+00 1ka2A 499 6.66e+00 d.92.1.5 77305 1tw9A 206 6.81e+00 a.45.1.1,c.47.1.5 107381,107382 1mun 225 7.40e+00 1mun a.96.1.2 18744 1gl2C 65 7.50e+00 h.1.15.1 65280 1w5tA 412 7.64e+00 1oyzA 280 7.86e+00 a.118.1.16 93775 1gmjA 84 8.29e+00 h.4.8.1 65310 1zejA 293 8.48e+00 1pylA 97 8.54e+00 d.1.1.2 104391 2ah6A 208 8.54e+00 2c12A 439 9.37e+00 1w27A 714 9.45e+00 1i4mA 108 9.45e+00 d.6.1.1 66025 1jk0B 345 9.62e+00 a.25.1.2 63143 1r1uA 106 9.96e+00 a.4.5.5 104771 2bb6A 414 1.04e+01 1i1rB 181 1.08e+01 1i1rB a.26.1.1 61548 1a0p 290 1.17e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1g8pA 350 1.25e+01 1g8pA c.37.1.20 60376 1jhgA 101 1.28e+01 1jhgA a.4.12.1 19009 1vddA 228 1.30e+01 e.49.1.1 108519 1mgrA 99 1.30e+01 d.1.1.2 79106 1fpzA 212 1.32e+01 1fpzA c.45.1.1 59976 2ccmA 191 1.34e+01 1io2A 213 1.38e+01 1ekeA c.55.3.1 62612 1wa8A 99 1.59e+01 2cohA 202 1.64e+01 2es4D 332 1.69e+01 1sqgA 429 1.70e+01 a.79.1.3,c.66.1.38 105912,105913 2c3mA 1231 1.75e+01 1wu7A 434 1.78e+01 1ho8A 480 1.79e+01 1ho8A a.118.1.9 61107 2bcqA 335 1.91e+01 2a72A 146 1.96e+01 1up7A 417 1.98e+01 1a5t 334 2.05e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1vgmA 378 2.05e+01 1bed 181 2.07e+01 1fvkA c.47.1.13 90330 1gnwA 211 2.11e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1owcA 427 2.11e+01 a.103.1.1 104039 1khdA 345 2.22e+01 a.46.2.1,c.27.1.1 77400,77401 2h58A 330 2.30e+01 1tx4A 198 2.35e+01 1tx4A a.116.1.1 19098 1kkhA 317 2.43e+01 d.14.1.5,d.58.26.3 72645,72646 1vmaA 306 2.43e+01 a.24.13.1,c.37.1.10 108887,108888 1go3F 107 2.44e+01 a.60.8.2 65407 1lfkA 398 2.64e+01 a.104.1.1 77926 2fd5A 180 2.69e+01 1x3kA 152 2.86e+01 1mswD 883 2.91e+01 e.8.1.3 79427 2bidA 197 2.97e+01 2bidA f.1.4.1 43398 1yb3A 175 3.00e+01 1p7tA 731 3.02e+01 c.1.13.1 94319 1vkuA 100 3.09e+01 a.28.1.1 108690 1kb9A 431 3.16e+01 d.185.1.1,d.185.1.1 77311,77312 2ar0A 541 3.24e+01 1wurA 220 3.44e+01 1tffA 234 3.47e+01 d.3.1.11 106854 1y7yA 74 3.52e+01 1rm6C 161 3.55e+01 1odoA 408 3.55e+01 a.104.1.1 92783 3pviA 157 3.58e+01 3pviA c.52.1.6 33300 2bl8A 103 3.62e+01 1s9pA 227 3.65e+01 a.123.1.1 105384 1nznA 126 3.69e+01 a.118.8.1 92382 1kwfA 363 3.72e+01 a.102.1.2 73078 2fupA 168 3.80e+01 1fpoA 171 3.88e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2b1eA 564 3.89e+01 2fug1 438 3.90e+01 1qf5A 431 3.91e+01 1adeA c.37.1.10 32212 1xi1A 575 4.04e+01 1cqxA 403 4.05e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1r31A 428 4.18e+01 d.58.20.1,d.179.1.1 96897,96898 1f20A 435 4.21e+01 b.43.4.1,c.25.1.4 64932,64933 1bc5A 269 4.22e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1nd9A 49 4.24e+01 a.6.1.6 85575 1yz4A 160 4.28e+01 1qexA 288 4.29e+01 1qexA b.32.1.1 24425 1x6iA 91 4.30e+01 1af7 274 4.37e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1elwA 118 4.42e+01 1a17 a.118.8.1 19207 2a1iA 146 4.49e+01 1q2zA 120 4.51e+01 a.118.19.1 95656 1ujwB 135 4.68e+01 h.4.9.1 99472 1v8bA 479 4.75e+01 2bcfA 276 4.76e+01 1ez0A 510 4.85e+01 1eyyA c.82.1.1 35385 2f6hX 419 4.95e+01 1flcB 175 4.96e+01 1flcB h.3.1.1 45716 1dk8A 147 5.02e+01 1agrE a.91.1.1 18548 1u55A 188 5.07e+01 d.278.1.1 107677 1gweA 503 5.08e+01 e.5.1.1 70667 1k3yA 221 5.10e+01 a.45.1.1,c.47.1.5 77245,77246 1ixcA 294 5.22e+01 a.4.5.37,c.94.1.1 83764,83765 1svsA 353 5.24e+01 c.37.1.8 106051 1ztuA 341 5.28e+01 2a65A 519 5.35e+01 1s6lA 212 5.37e+01 1zx1A 231 5.44e+01 1z67A 135 5.44e+01 1hbnA 549 5.45e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1z3xA 238 5.47e+01 1ix9A 205 5.50e+01 a.2.11.1,d.44.1.1 76899,76900 1gs9A 165 5.56e+01 a.24.1.1 83313 1jkoC 52 5.59e+01 a.4.1.2 66809 1pieA 419 5.60e+01 d.14.1.5,d.58.26.7 94706,94707 1ks9A 291 5.65e+01 a.100.1.7,c.2.1.6 68857,68858 1ew4A 106 5.71e+01 1ew4A d.82.2.1 40023 2a6hC 1119 5.72e+01 1o9rA 162 5.78e+01 a.25.1.1 86706 1dgnA 89 5.95e+01 1dgnA a.77.1.3 18436 1kl9A 182 5.97e+01 b.40.4.5 72681 2fe8A 315 6.04e+01 1tn6A 382 6.12e+01 1s8nA 205 6.17e+01 c.23.1.1 105374 1l1eA 287 6.17e+01 c.66.1.18 73454 1y8aA 332 6.20e+01 1q52A 314 6.21e+01 c.14.1.3 95846 1pmzA 86 6.37e+01 a.39.1.10 104195 1cipA 353 6.39e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1colA 204 6.43e+01 1a87 f.1.1.1 43378 1evyA 366 6.52e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1w99A 558 6.59e+01 1t3qA 168 6.72e+01 a.56.1.1,d.15.4.2 106367,106368 1b3uA 588 6.80e+01 1b3uA a.118.1.2 19135 2chnA 716 6.98e+01 2cp8A 54 6.98e+01 1i7kA 179 7.06e+01 1u9aA d.20.1.1 61889 1ds1A 324 7.09e+01 1drtA b.82.2.2 28127 1sumB 235 7.10e+01 a.7.12.1 106025 1ois 223 7.18e+01 1a36A e.15.1.1 43267 1l9lA 74 7.18e+01 a.64.1.1 77827 1jmsA 381 7.19e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1yodA 30 7.21e+01 2b4jC 98 7.34e+01 2gf4A 100 7.34e+01 1i6pA 220 7.35e+01 1ddzA c.53.2.1 61848 1g4yB 101 7.38e+01 1g4yB f.15.1.1 60251 1yi8A 351 7.41e+01 1gxyA 226 7.44e+01 d.166.1.3 76380 2c1xA 456 7.54e+01 1ks8A 433 7.57e+01 a.102.1.2 77519 1u00A 227 7.70e+01 1zymA 258 7.70e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1nrlA 316 7.71e+01 a.123.1.1 92091 2cfuA 658 7.79e+01 1dowA 205 7.81e+01 1dovA a.24.9.1 16626 1qyiA 384 7.85e+01 c.108.1.13 96595 2bbhA 269 8.02e+01 1wzaA 488 8.05e+01 1z7lA 276 8.08e+01 1di1A 300 8.08e+01 1di1A a.128.1.4 19446 1h5wA 309 8.09e+01 e.27.1.1 65635 2cjpA 328 8.10e+01 1zhxA 438 8.12e+01 1qmyA 167 8.13e+01 1qmyA d.3.1.2 37094 2c9wA 169 8.16e+01 2fk8A 318 8.23e+01 2axtF 45 8.28e+01 1qh8A 478 8.34e+01 1qguA c.92.2.3 35633 1nd4A 264 8.49e+01 d.144.1.6 91815 1xm9A 457 8.55e+01 1mp1A 111 8.55e+01 a.188.1.1 91382 1s28A 132 8.60e+01 d.198.1.1 105223 1wpaA 114 8.72e+01 1wgzA 510 8.74e+01 1v4xB 146 8.76e+01 a.1.1.2 108364 1oaa 259 8.78e+01 1oaa c.2.1.2 29829 1fqiA 147 8.84e+01 1agrE a.91.1.1 18542