# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 1.12e-14 1ydyA 356 9.19e-03 1vgjA 184 2.93e-02 1oz9A 150 4.26e-02 d.92.1.15 93808 1fmcA 255 1.30e-01 1cydA c.2.1.2 29856 1ta9A 450 5.46e-01 1vb3A 428 7.77e-01 1v5iB 76 9.29e-01 1uw1A 80 1.08e+00 k.42.1.1 100069 1lkdA 297 1.22e+00 d.32.1.3,d.32.1.3 78059,78060 1af7 274 1.34e+00 1af7 a.58.1.1,c.66.1.8 17928,34203 1omoA 322 1.37e+00 c.2.1.13 104017 1bc5A 269 1.57e+00 1af7 a.58.1.1,c.66.1.8 17929,34204 1sqgA 429 1.88e+00 a.79.1.3,c.66.1.38 105912,105913 1iv8A 720 1.92e+00 b.71.1.1,c.1.8.1 76842,76843 1eyqA 222 2.29e+00 1eypA d.36.1.1 38534 2b9eA 303 2.41e+00 1m7bA 184 2.41e+00 c.37.1.8 74572 1pl8A 356 2.47e+00 b.35.1.2,c.2.1.1 94878,94879 2ae2A 260 2.62e+00 1bdb c.2.1.2 29945 2f02A 323 2.92e+00 1gyxA 76 3.09e+00 d.80.1.1 76387 2ge3A 170 3.12e+00 1sr9A 644 3.25e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1w1oA 534 3.26e+00 d.58.32.4,d.145.1.1 109071,109072 1pvgA 418 3.53e+00 d.14.1.3,d.122.1.2 95161,95162 2ck3D 482 3.84e+00 1iv3A 152 4.06e+00 d.79.5.1 76828 1oapA 109 4.62e+00 d.79.7.1 92706 1wzcA 249 4.73e+00 1l6rA 227 4.87e+00 c.108.1.10 77768 1gz2A 142 4.98e+00 d.169.1.1 83392 1h8eD 482 5.15e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1m5wA 243 5.17e+00 c.1.24.1 84836 1j57A 143 5.50e+00 d.221.1.1 77079 1ohvA 472 5.92e+00 c.67.1.4 93031 1h4vB 421 6.13e+00 1adjA c.51.1.1,d.104.1.1 60624,60625 1aisA 182 6.28e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1xg5A 279 6.46e+00 1kqpA 271 6.51e+00 c.26.2.1 72883 1m1nB 522 6.55e+00 c.92.2.3 78418 2fq3A 104 6.56e+00 5csmA 256 6.91e+00 5csmA a.130.1.2 19494 2axiA 115 7.93e+00 2bx6A 350 8.39e+00 1afwA 393 8.62e+00 1afwA c.95.1.1,c.95.1.1 35900,35901 1bupA 386 8.70e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1u0kA 288 9.22e+00 d.21.1.2,d.21.1.2 107547,107548 1us5A 314 9.32e+00 c.94.1.1 99856 1tu5A 746 9.65e+00 1a2zA 220 1.06e+01 1a2zA c.56.4.1 33794 1pbuA 162 1.09e+01 d.58.46.1 88030 2abqA 306 1.10e+01 1isiA 265 1.11e+01 e.4.1.1 71394 1ja9A 274 1.12e+01 c.2.1.2 62817 2c07A 285 1.13e+01 1vl4A 447 1.13e+01 d.283.1.1 108718 1j93A 353 1.15e+01 c.1.22.1 66454 8rucI 123 1.17e+01 1rboC d.73.1.1 39629 2a5yB 549 1.18e+01 1t6nA 220 1.19e+01 c.37.1.19 106576 1xu9A 286 1.28e+01 2fiuA 99 1.30e+01 1f2tB 148 1.33e+01 1f2tB 2h1rA 299 1.34e+01 1qu9A 128 1.38e+01 1qu9A d.79.1.1 39755 1r2qA 170 1.44e+01 c.37.1.8 96874 1nmeA 146 1.54e+01 c.17.1.1 85874 1a73A 163 1.56e+01 1a73A d.4.1.3 37145 1vheA 373 1.56e+01 b.49.3.1,c.56.5.4 100669,100670 1qysA 106 1.57e+01 k.41.1.1 96603 1t6t1 118 1.60e+01 1wvqA 167 1.62e+01 1vl5A 260 1.68e+01 c.66.1.41 108720 1rqbA 539 1.71e+01 a.5.7.2,c.1.10.5 105057,105058 1v7rA 186 1.72e+01 c.51.4.1 100482 1zxmA 400 1.73e+01 4tmkA 213 1.75e+01 5tmpA c.37.1.1 31930 1z08A 170 1.77e+01 1uekA 275 1.78e+01 d.14.1.5,d.58.26.5 88483,88484 1a53 247 1.83e+01 1a53 c.1.2.4 28564 1wnaA 131 1.85e+01 1jbiA 100 1.86e+01 d.209.1.1 66481 1on0A 158 1.90e+01 d.108.1.1 87095 1e5rA 290 1.93e+01 1e5rA b.82.2.4 59276 1h65A 270 2.04e+01 c.37.1.8 65640 2absA 383 2.06e+01 1aua 296 2.09e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1l1lA 739 2.13e+01 c.7.1.4 73470 1regX 122 2.24e+01 1regX d.58.27.1 39406 1g6sA 427 2.30e+01 1eps d.68.2.2 39584 1xviA 275 2.33e+01 1v72A 356 2.33e+01 1fseA 74 2.35e+01 1fseA a.4.6.2 60000 1twuA 139 2.39e+01 d.32.1.8 107413 1gd0A 122 2.42e+01 1dptA d.80.1.3 39834 1ixkA 315 2.42e+01 c.66.1.38 90716 2bkaA 242 2.45e+01 1pzgA 331 2.45e+01 c.2.1.5,d.162.1.1 95425,95426 2gqrA 237 2.48e+01 2a5hA 416 2.49e+01 4eugA 229 2.53e+01 3eugA c.18.1.1 31019 1nhkL 144 2.54e+01 1npk d.58.6.1 39142 1jh6A 189 2.59e+01 d.61.1.1 66707 1rlhA 173 2.64e+01 d.256.1.1 97646 1914 232 2.66e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1wn2A 121 2.70e+01 1r0mA 375 2.71e+01 c.1.11.2,d.54.1.1 104747,104748 2f15A 96 2.71e+01 1uarA 285 2.74e+01 c.46.1.2,c.46.1.2 107762,107763 1nh2B 53 2.74e+01 a.32.1.1 91874 1dptA 117 2.77e+01 1dptA d.80.1.3 39862 1e0cA 271 2.91e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1v6zA 228 3.03e+01 1xhnA 184 3.06e+01 2azeB 106 3.07e+01 1kw3B 292 3.08e+01 d.32.1.3,d.32.1.3 77549,77550 1jflA 228 3.12e+01 c.78.2.1,c.78.2.1 71656,71657 2fpmA 322 3.14e+01 1sc3A 178 3.15e+01 c.17.1.1 105416 1k66A 149 3.20e+01 c.23.1.1 90941 1go3F 107 3.29e+01 a.60.8.2 65407 1hxhA 253 3.30e+01 c.2.1.2 76725 1dmgA 225 3.34e+01 1dmgA c.22.1.1 31036 2bgkA 278 3.37e+01 1thg 544 3.39e+01 1thg c.69.1.17 34763 1qd9A 124 3.47e+01 1qu9A d.79.1.1 39758 1kq3A 376 3.49e+01 e.22.1.2 68790 1wb4A 297 3.63e+01 1q9uA 130 3.63e+01 d.129.7.1 96314 1pq1A 196 3.65e+01 f.1.4.1 94986 2gdjA 264 3.70e+01 2ebn 289 3.86e+01 2ebn c.1.8.5 28990 1j0dA 341 3.89e+01 c.79.1.1 83902 1c0pA 363 3.94e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1n0wA 243 3.94e+01 c.37.1.11 79772 1azo 232 3.97e+01 1azo c.52.1.14 33329 1vpdA 299 3.97e+01 1ylhA 560 4.01e+01 1o4sA 389 4.02e+01 c.67.1.1 86620 2gdzA 267 4.03e+01 1kkhA 317 4.05e+01 d.14.1.5,d.58.26.3 72645,72646 1s5jA 847 4.07e+01 1mqeA 207 4.11e+01 d.113.1.1 91394 1u6zA 513 4.14e+01 2afbA 351 4.15e+01 2bj7A 138 4.16e+01 1up7A 417 4.16e+01 1u6eA 335 4.18e+01 1jljA 189 4.21e+01 c.57.1.1 63169 2bmfA 451 4.22e+01 1lj8A 493 4.30e+01 a.100.1.9,c.2.1.6 90392,90393 1guzA 310 4.30e+01 c.2.1.5,d.162.1.1 65586,65587 1qopB 396 4.35e+01 2tysB c.79.1.1 35270 1ryoA 327 4.41e+01 c.94.1.2 98108 2gf9A 189 4.42e+01 1kfwA 435 4.43e+01 c.1.8.5,d.26.3.1 77376,77377 2brcA 214 4.46e+01 1e5mA 416 4.48e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1ef8A 261 4.51e+01 1ef8A c.14.1.3 30921 1a9xB 379 4.52e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2gw8A 114 4.57e+01 1mixA 206 4.60e+01 a.11.2.1,b.55.1.5 79166,79167 1seiA 130 4.62e+01 1seiA d.140.1.1 41463 2beiA 170 4.63e+01 1ykdA 398 4.66e+01 1gca 309 4.68e+01 1gca c.93.1.1 35659 1nv8A 284 4.68e+01 c.66.1.30 86224 2b5wA 357 4.68e+01 1qsgA 265 4.72e+01 1eny c.2.1.2 29935 1y74A 57 4.72e+01 1fjgL 135 4.74e+01 1fjfL b.40.4.5 25346 1vcvA 226 4.76e+01 2c7pA 327 4.81e+01 1vi9A 299 4.84e+01 c.72.1.5 100750 1c93A 265 4.85e+01 2ebn c.1.8.5 28998 1oaoC 729 4.92e+01 e.26.1.3 86746 1ockA 412 4.93e+01 c.117.1.1 86802 1hfoA 113 4.94e+01 d.80.1.3 61006 2a5jA 191 4.97e+01 1wxiA 275 5.02e+01 1j09A 468 5.02e+01 a.97.1.1,c.26.1.1 77025,77026 1o26A 232 5.05e+01 d.207.1.1 86566 1rypH 205 5.15e+01 d.153.1.4 41876 1q8bA 105 5.16e+01 d.58.4.6 96201 2ftxA 90 5.18e+01 1uv0A 149 5.20e+01 d.169.1.1 100028 1y14A 187 5.25e+01 1xkyA 301 5.25e+01 1vjlA 164 5.32e+01 d.257.1.1 100822 1cczA 171 5.33e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1dqpA 230 5.33e+01 1dqnA c.61.1.1 34069 1q7zA 566 5.33e+01 c.1.21.2,c.1.26.1 96090,96091 1qf9A 194 5.47e+01 1zin c.37.1.1 31848 1l1eA 287 5.49e+01 c.66.1.18 73454 1pjcA 361 5.50e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1wr2A 238 5.50e+01 1xo1A 291 5.58e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1b67A 68 5.60e+01 1a7w a.22.1.2 16474 1nkiA 135 5.61e+01 d.32.1.2 91941 1qsmA 152 5.64e+01 1qsmA d.108.1.1 40808 1go3E 187 5.66e+01 b.40.4.5,d.230.1.1 83054,83055 1w2xA 758 5.67e+01 c.14.1.4,c.14.1.4 109134,109135 1uyrA 737 5.68e+01 c.14.1.4,c.14.1.4 100188,100189 1k7wA 468 5.69e+01 a.127.1.1 72130 1p1xA 260 5.70e+01 c.1.10.1 104060 1tjvA 474 5.72e+01 a.127.1.1 107054 1tca 317 5.75e+01 1tca c.69.1.17 34726 1owlA 484 5.77e+01 a.99.1.1,c.28.1.1 93647,93648 1n7kA 234 5.84e+01 c.1.10.1 85374 1vmbA 140 5.85e+01 1hgxA 183 5.91e+01 1tc1A c.61.1.1 34027 2cx1A 187 5.93e+01 1mxiA 160 5.97e+01 c.116.1.1 79646 1sfp 114 5.97e+01 1sfp b.23.1.1 23895 1uu1A 335 5.97e+01 c.67.1.1 99993 1ugjA 141 6.10e+01 b.41.1.3 107826 2g6fX 59 6.11e+01 2d5cA 263 6.21e+01 2cw8A 537 6.28e+01 1zj8A 566 6.30e+01 1n12A 138 6.34e+01 b.2.3.2 79779 2bcgY 206 6.43e+01 1s6cA 183 6.46e+01 a.39.1.5 98594 1pyoA 167 6.50e+01 c.17.1.1 95370 1m6yA 301 6.53e+01 a.60.13.1,c.66.1.23 78716,78717 2g9iA 249 6.53e+01 1vmaA 306 6.55e+01 a.24.13.1,c.37.1.10 108887,108888 1n9lA 109 6.56e+01 d.110.3.6 85468 1h3oA 75 6.57e+01 a.22.1.3 76644 1mo9A 523 6.58e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1dd9A 338 6.62e+01 1dd9A e.13.1.1 43254 1otfA 62 6.64e+01 1otfA d.80.1.1 39820 1vhoA 346 6.75e+01 b.49.3.1,c.56.5.4 100694,100695 1z3eA 132 6.77e+01 1zljA 78 6.78e+01 1r4pA 297 6.80e+01 d.165.1.2 97025 1zowA 313 6.81e+01 1id1A 153 6.83e+01 1id1A c.2.1.9 62286 2bu3A 254 6.86e+01 1wlsA 328 6.93e+01 1c30B 382 7.06e+01 c.8.3.1,c.23.16.1 30736,31413 1r9kA 172 7.11e+01 a.168.1.1 104869 1jcfA 344 7.20e+01 c.55.1.1,c.55.1.1 62878,62879 2gpyA 233 7.28e+01 2fafA 608 7.28e+01 1rq2A 382 7.29e+01 c.32.1.1,d.79.2.1 105048,105049 1u7iA 136 7.29e+01 d.32.1.7 107724 1z5yE 149 7.32e+01 2dbsA 90 7.41e+01 1uv7A 110 7.47e+01 d.67.4.1 100040 1zaiA 363 7.53e+01 1rypA 243 7.55e+01 1pmaA d.153.1.4 41932 2bmeA 186 7.56e+01 1ta3A 274 7.57e+01 c.1.8.5 106731 2a1hA 365 7.66e+01 1px5A 349 7.69e+01 a.160.1.2,d.218.1.6 95277,95278 1ydwA 362 7.69e+01 1zlmA 58 7.71e+01 1q15A 503 7.72e+01 c.26.2.1,d.153.1.1 95538,95539 1qauA 112 7.72e+01 1qauA b.36.1.1 24779 1qe3A 489 7.74e+01 2bce c.69.1.1 34630 2ftbA 125 7.76e+01 1yg9A 330 7.79e+01 1qz5A 375 7.79e+01 c.55.1.1,c.55.1.1 96614,96615 2b2nA 344 7.83e+01 1gx5A 536 7.86e+01 e.8.1.4 70682 1sflA 238 7.88e+01 1v0wA 506 7.91e+01 d.136.1.2,d.136.1.2 108220,108221 2gu2A 312 7.92e+01 2bl0C 142 7.94e+01 1wy1A 172 7.95e+01 1r9cA 139 8.02e+01 d.32.1.2 97255 2bg1A 494 8.03e+01 1nvpB 57 8.07e+01 a.32.1.1 92211 1jdlA 121 8.14e+01 a.3.1.1 66557 1zq9A 285 8.18e+01 1lfpA 249 8.20e+01 e.39.1.1 73885 1vrvA 101 8.21e+01 2fueA 262 8.22e+01 2f9zC 159 8.22e+01 1tvlA 454 8.23e+01 c.1.16.4 107366 1mba 147 8.28e+01 2fal a.1.1.2 15149 1lyp 32 8.31e+01 1lyp j.17.1.1 46169 1vkkA 154 8.33e+01 d.109.1.2 108669 1h5rA 293 8.35e+01 c.68.1.6 65623 1yzfA 195 8.38e+01 1f8fA 371 8.39e+01 b.35.1.2,c.2.1.1 83246,83247 1h6kZ 98 8.43e+01 d.58.7.1 60686 1okhA 46 8.46e+01 g.13.1.1 93253 1tt7A 330 8.54e+01 1bg6 359 8.55e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1q7sA 117 8.56e+01 c.131.1.1 96055 2f96A 224 8.76e+01 1ursA 402 8.78e+01 c.94.1.1 99833 2gvkA 317 8.81e+01 1ub0A 258 8.83e+01 c.72.1.2 88394 1wmmA 145 8.88e+01 1o63A 219 8.91e+01 c.94.1.1 92540 1spxA 278 8.91e+01 c.2.1.2 98958 1xc3A 302 8.91e+01 2a2cA 478 8.92e+01 2rhe 114 8.96e+01 8fabA b.1.1.1 20523